Psyllid ID: psy307
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1019 | 2.2.26 [Sep-21-2011] | |||||||
| O60508 | 579 | Pre-mRNA-processing facto | yes | N/A | 0.427 | 0.753 | 0.535 | 1e-143 | |
| Q9DC48 | 579 | Pre-mRNA-processing facto | yes | N/A | 0.427 | 0.753 | 0.533 | 1e-143 | |
| O43071 | 558 | Pre-mRNA-processing facto | yes | N/A | 0.489 | 0.894 | 0.294 | 3e-71 | |
| P40968 | 455 | Pre-mRNA-processing facto | yes | N/A | 0.374 | 0.839 | 0.277 | 1e-50 | |
| Q92556 | 727 | Engulfment and cell motil | no | N/A | 0.117 | 0.165 | 0.557 | 2e-33 | |
| Q8BPU7 | 727 | Engulfment and cell motil | no | N/A | 0.117 | 0.165 | 0.557 | 2e-33 | |
| Q8BHL5 | 732 | Engulfment and cell motil | no | N/A | 0.112 | 0.157 | 0.598 | 3e-31 | |
| Q96JJ3 | 720 | Engulfment and cell motil | no | N/A | 0.112 | 0.159 | 0.598 | 3e-31 | |
| A4FUD6 | 720 | Engulfment and cell motil | no | N/A | 0.112 | 0.159 | 0.598 | 3e-31 | |
| Q5RCC1 | 720 | Engulfment and cell motil | no | N/A | 0.112 | 0.159 | 0.598 | 3e-31 |
| >sp|O60508|PRP17_HUMAN Pre-mRNA-processing factor 17 OS=Homo sapiens GN=CDC40 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 509 bits (1312), Expect = e-143, Method: Compositional matrix adjust.
Identities = 255/476 (53%), Positives = 326/476 (68%), Gaps = 40/476 (8%)
Query: 166 PEDIEGFLGPFENQRRTFASYGYALDPS---SEVESKVIGASMSGDKNK--TVFESTSKR 220
P I F+ FE QRRTFA+YGYALDPS +V +K IG+ +KN+ TVFE+ K+
Sbjct: 117 PAHINDFM--FEQQRRTFATYGYALDPSLDNHQVSAKYIGSVEEAEKNQGLTVFETGQKK 174
Query: 221 PLDKRKRNRNDCPEDIEGFLGPWGGYTDEEKVSRPNEAQAAELEEYLAKKQKKGKQSEEK 280
++K ND +I+GFLGPW Y DE+ V++P+E + EL+E AK+QKKGKQ EEK
Sbjct: 175 TEKRKKFKENDA-SNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEK 233
Query: 281 PLEEKTILHIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISA 340
P EEKTILH+K+ DYQGRS+LH P DVG NLRS PP++C+LPK Q+H W GHTKG+SA
Sbjct: 234 PGEEKTILHVKEMYDYQGRSYLHIPQDVGVNLRSTMPPEKCYLPKKQIHVWSGHTKGVSA 293
Query: 341 IRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRW 400
+R FP S HLLLSCSMDC++KLWEVY ERRC+RT+ GH +AVRDICFN GT F+SA
Sbjct: 294 VRLFPLSGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSA--- 350
Query: 401 FPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN---NTGTNFISAGYD 457
+ D +KLW+ + +C+ + + +R+ + FN + F++ D
Sbjct: 351 -----------AYDRYLKLWDT-ETGQCI-SRFTNRKVPYCVKFNPDEDKQNLFVAGMSD 397
Query: 458 RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL-------------DIPVDMKYIA 504
+ + WD SGE + + A DE+++ + DIPVD KYIA
Sbjct: 398 KKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIA 457
Query: 505 DPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564
+P+MHSMPAVT SPN KWLACQSMDN+ILIF A NRF+LN+KK F+GHMVAGYAC +DFS
Sbjct: 458 EPSMHSMPAVTLSPNGKWLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFS 517
Query: 565 PDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDA 620
PDMSY+ISGD +GK IWDWKTTKL+ ++KAHD VCI +WHPHE SKV+T GWD
Sbjct: 518 PDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDG 573
|
Associates with the spliceosome late in the splicing pathway and may function in the second step of pre-mRNA splicing. Homo sapiens (taxid: 9606) |
| >sp|Q9DC48|PRP17_MOUSE Pre-mRNA-processing factor 17 OS=Mus musculus GN=Cdc40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 509 bits (1311), Expect = e-143, Method: Compositional matrix adjust.
Identities = 254/476 (53%), Positives = 326/476 (68%), Gaps = 40/476 (8%)
Query: 166 PEDIEGFLGPFENQRRTFASYGYALDPS---SEVESKVIGASMSGDKNK--TVFESTSKR 220
P I F+ FE QRRTFA+YGYALDPS +V +K IG+ +KN+ TVFE+ K+
Sbjct: 117 PAHINDFM--FEQQRRTFATYGYALDPSLDNHQVSAKYIGSVEEAEKNQGLTVFETGQKK 174
Query: 221 PLDKRKRNRNDCPEDIEGFLGPWGGYTDEEKVSRPNEAQAAELEEYLAKKQKKGKQSEEK 280
++K ND +I+GFLGPW Y DE+ V++P+E + EL+E AK+QKKGKQ EEK
Sbjct: 175 TEKRKKFKENDA-SNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEK 233
Query: 281 PLEEKTILHIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISA 340
P EEKTILH+K+ DYQGRS+LH P DVG NLRS PP++C+LPK Q+H W GHTKG+SA
Sbjct: 234 PGEEKTILHVKEMYDYQGRSYLHIPQDVGVNLRSSVPPEKCYLPKKQIHVWSGHTKGVSA 293
Query: 341 IRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRW 400
+R FP S HLLLSCSMDC++KLWEVY +RRC+RT+ GH +AVRDICFN GT F+SA
Sbjct: 294 VRLFPLSGHLLLSCSMDCKIKLWEVYGDRRCLRTFIGHSKAVRDICFNTAGTQFLSA--- 350
Query: 401 FPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN---NTGTNFISAGYD 457
+ D +KLW+ + +C+ + + +R+ + FN + F++ D
Sbjct: 351 -----------AYDRYLKLWDT-ETGQCI-SRFTNRKVPYCVKFNPDEDKQNLFVAGMSD 397
Query: 458 RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL-------------DIPVDMKYIA 504
+ + WD SGE + + A DE+++ + DIPVD KYIA
Sbjct: 398 KKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIA 457
Query: 505 DPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564
+P+MHSMPAVT SPN KWLACQSMDN+ILIF A NRF+LN+KK F+GHMVAGYAC +DFS
Sbjct: 458 EPSMHSMPAVTLSPNGKWLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFS 517
Query: 565 PDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDA 620
PDMSY+ISGD +GK IWDWKTTKL+ ++KAHD VCI +WHPHE SKV+T GWD
Sbjct: 518 PDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDG 573
|
Associates with the spliceosome late in the splicing pathway and may function in the second step of pre-mRNA splicing. Mus musculus (taxid: 10090) |
| >sp|O43071|PRP17_SCHPO Pre-mRNA-processing factor 17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp17 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (691), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 191/648 (29%), Positives = 294/648 (45%), Gaps = 149/648 (22%)
Query: 10 SSSESDAESQTLHLKPI---ESCAFSVAKSLSVCATPAVIPKVMESSNLT-DVNTKEITK 65
S SE SQ+ +++P+ E+ A PAV+ V + ++ N++E+ +
Sbjct: 8 SDSEEQENSQSPNIQPLLHTENLA------------PAVVDNVKDDLIVSKGGNSRELAR 55
Query: 66 NLRYEELYAPEYGPVNPFLTQQQRADKNTLSGFVEQAHINSFQFENQ--RRTFASYGYAL 123
N+ E+ P GP NPF+T++Q + KN+++G+ E+ ++ +F F + T A YG
Sbjct: 56 NVPVNEMVQPALGPANPFVTKEQDSIKNSITGYAEREYVPNFVFNQEYYANTHAIYG--- 112
Query: 124 DPSSEVESKVIGASTSGDKNKTVFESTSKRPLDKRKRNRNDC--PEDIEG---FLGPFEN 178
+ D N+ + KR K K R D P +EG + GP
Sbjct: 113 -------------KRNFDDNEATTSTDLKRKSQKIKERREDPGDPSILEGDGAYKGP--- 156
Query: 179 QRRTFASYGYALDPSSEVESKVIGASMSGDKNKTVFESTSKRPLDKRKRNRNDCPEDIEG 238
+A YG SE S + S LD +
Sbjct: 157 ----WAGYG------SEQSSSPLEYSE----------YEEVESLDVKS------------ 184
Query: 239 FLGPWGGYTDEEKVSRPNEAQAAELEEYLAKKQKKGKQSEEKPLEEKTILHIKDPTDYQG 298
E+ N Q L+E LA + + +S +E+TILH DYQ
Sbjct: 185 ----------EKDTESNNLGQNELLKEQLATPEVETHRS-----KEETILHKDRLFDYQN 229
Query: 299 RSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDC 358
RS++H P+DVG NL + C++PK + TW+GHTKGIS +R+FP S HLLLS SMD
Sbjct: 230 RSYMHVPNDVGINLSEEPGEQTCYIPKKHIFTWKGHTKGISCLRFFPISGHLLLSGSMDN 289
Query: 359 RVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISA--------------------- 397
++K+WEVY +R +RT+ GH + +RD+ F+ G +F+S
Sbjct: 290 QIKIWEVYHDRSLLRTFQGHARPIRDLSFSQDGRSFLSTSFDKTIKLWDTELGKCLNCFN 349
Query: 398 ---------IRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTG 448
+ P + L+ + D R+ +++ + V+ Y H + I F G
Sbjct: 350 SDRLTNCVKFQVDPDKPNEFLAGTADKRILQFDI-RSPDIVQAYDHHLGGINSITFLENG 408
Query: 449 TNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTM 508
F++ D ++ W+ PV +K++AD M
Sbjct: 409 KRFVTTSDDSSMRFWE-----------------------------YGTPVPIKFVADIAM 439
Query: 509 HSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMS 568
HSMP V PN K +ACQS+DN I ++SA +++ N+KK F+G+ +GY+ + FSPD
Sbjct: 440 HSMPRVALRPNGKSIACQSLDNCIYVYSAYEKYRQNKKKVFKGYSCSGYSLEVGFSPDGR 499
Query: 569 YLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTA 616
++ SGD+ G WDWKT KL K AH G S +HP E SKV T+
Sbjct: 500 FVFSGDSSGNACFWDWKTCKLMAKLPAHSGPVQSMAFHPQETSKVATS 547
|
Functions in the second step of pre-mRNA splicing. Involved in splicing intron which are longer than 200 nucleotides. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P40968|PRP17_YEAST Pre-mRNA-processing factor 17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC40 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 128/461 (27%), Positives = 217/461 (47%), Gaps = 79/461 (17%)
Query: 202 GASMSGDKNKTVFESTSKRP----LDKRK---------RNRNDCPEDIEGFLGPWGGYTD 248
G S+ KN + E TS P + KRK R R D GPWG ++
Sbjct: 20 GKSVHEKKNGNLHEDTSYEPSSNNIHKRKSHFTKSELKRRRKTRKGD-----GPWGSWSS 74
Query: 249 -EEKVSRPNEAQAAELEEYLAKKQKKGKQSEEKPLEEKTILHIKDPTDYQGRSFLHPPHD 307
+++ S+ +E Q + + ++ + SE+ +EE + + K DYQGR +L+PP+D
Sbjct: 75 SDDETSQASETQKEDQDIFVHALAEDNLDSEQIEVEEVSHFYGKSEKDYQGRGYLYPPND 134
Query: 308 VGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK 367
V +LR + RC+LPK + + GH +G +A+++ PK+ HL+LS D +K+W+ Y
Sbjct: 135 VDVDLREERISFRCYLPKKVIRNYPGHPEGTTALKFLPKTGHLILSGGNDHTIKIWDFYH 194
Query: 368 ERRCVRTYYGHRQAVRDICFNNTGTNFISA----------------------------IR 399
+ C+R + GH + ++ + F +F+S+ +
Sbjct: 195 DYECLRDFQGHNKPIKALRFTEDCQSFLSSSFDRSVKIWDTETGKVKTRLHLNSTPADVE 254
Query: 400 WFPKSAHLLLSCSMDCRVKLWE--VYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD 457
P + H + + ++ ++ V + V+TY H ++ + + G+ FIS+ D
Sbjct: 255 SRPTNPHEFIVGLSNSKILHYDDRVSENQGLVQTYDHHLSSILALKYFPDGSKFISSSED 314
Query: 458 RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSS 517
+ +++W+ + I V +K I+D HSMP +
Sbjct: 315 KTVRIWENQ-----------------------------INVPIKQISDTAQHSMPFLNVH 345
Query: 518 PNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG 577
P+ + QSMDN+I FS ++K + KK F+GH AGY SL FS D Y+ SGD+
Sbjct: 346 PSQNYFCAQSMDNRIYSFSLKPKYKRHPKKIFKGHSSAGYGISLAFSGDGRYICSGDSKS 405
Query: 578 KCYIWDWKTTKLFKKWKAHDGVCISTL-WHPHEPSKVVTAG 617
+ + WDW T++L K I+ + WHP E SKV+ +G
Sbjct: 406 RLFTWDWNTSRLLNNIKIPGNKPITQVDWHPQETSKVICSG 446
|
May function in the second step of pre-mRNA splicing. Regulatory protein involved in replication and mitotic spindle formation and/or maintenance. Required for initiation and completion of S-phase and for initiation and completion of DNA replication. Might be required for the maintenance of microtubules. Essential only at elevated temperatures. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q92556|ELMO1_HUMAN Engulfment and cell motility protein 1 OS=Homo sapiens GN=ELMO1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 98/122 (80%), Gaps = 2/122 (1%)
Query: 725 EKTAAEFYCICIVLLNKTWKEMRATTEDFVKVFSVVREQITRALSSQPASLDKFRANISR 784
+++ EF+CICI LLNKTWKEMRAT+EDF KV VV+EQ+ RAL+++P+SLD+F++ +
Sbjct: 449 DRSFEEFFCICIQLLNKTWKEMRATSEDFNKVMQVVKEQVMRALTTKPSSLDQFKSKLQN 508
Query: 785 LTYSEITNLWQQERTSREEWESHAKPIVELKELITPEIVDLIQQQRLGYLVEGTRFTKYS 844
L+Y+EI + Q ER ++E+++S +PI+ELKE I PEI++LI+QQRL LVEGT F K +
Sbjct: 509 LSYTEILKIRQSERMNQEDFQS--RPILELKEKIQPEILELIKQQRLNRLVEGTCFRKLN 566
Query: 845 SR 846
+R
Sbjct: 567 AR 568
|
Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. Homo sapiens (taxid: 9606) |
| >sp|Q8BPU7|ELMO1_MOUSE Engulfment and cell motility protein 1 OS=Mus musculus GN=Elmo1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 98/122 (80%), Gaps = 2/122 (1%)
Query: 725 EKTAAEFYCICIVLLNKTWKEMRATTEDFVKVFSVVREQITRALSSQPASLDKFRANISR 784
+++ EF+CICI LLNKTWKEMRAT+EDF KV VV+EQ+ RAL+++P+SLD+F++ +
Sbjct: 449 DRSFEEFFCICIQLLNKTWKEMRATSEDFNKVMQVVKEQVMRALTTKPSSLDQFKSKLQN 508
Query: 785 LTYSEITNLWQQERTSREEWESHAKPIVELKELITPEIVDLIQQQRLGYLVEGTRFTKYS 844
L+Y+EI + Q ER ++E+++S +PI+ELKE I PEI++LI+QQRL LVEGT F K +
Sbjct: 509 LSYTEILKIRQSERMNQEDFQS--RPILELKEKIQPEILELIKQQRLNRLVEGTCFRKLN 566
Query: 845 SR 846
+R
Sbjct: 567 AR 568
|
Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. Mus musculus (taxid: 10090) |
| >sp|Q8BHL5|ELMO2_MOUSE Engulfment and cell motility protein 2 OS=Mus musculus GN=Elmo2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/117 (59%), Positives = 88/117 (75%), Gaps = 2/117 (1%)
Query: 730 EFYCICIVLLNKTWKEMRATTEDFVKVFSVVREQITRALSSQPASLDKFRANISRLTYSE 789
E + ICI LLNKTWKEMRAT EDF KV VVREQITRAL S+P SLD+F++ + L+YSE
Sbjct: 459 ELFGICIQLLNKTWKEMRATAEDFNKVMQVVREQITRALPSKPNSLDQFKSKLRSLSYSE 518
Query: 790 ITNLWQQERTSREEWESHAKPIVELKELITPEIVDLIQQQRLGYLVEGTRFTKYSSR 846
I L Q ER S+++++S PIVEL+E I PEI++LI+QQRL L EG+ F K +R
Sbjct: 519 ILRLRQSERMSQDDFQS--PPIVELREKIQPEILELIKQQRLNRLCEGSSFRKIGNR 573
|
Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. Mus musculus (taxid: 10090) |
| >sp|Q96JJ3|ELMO2_HUMAN Engulfment and cell motility protein 2 OS=Homo sapiens GN=ELMO2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/117 (59%), Positives = 88/117 (75%), Gaps = 2/117 (1%)
Query: 730 EFYCICIVLLNKTWKEMRATTEDFVKVFSVVREQITRALSSQPASLDKFRANISRLTYSE 789
E + ICI LLNKTWKEMRAT EDF KV VVREQITRAL S+P SLD+F++ + L+YSE
Sbjct: 447 ELFGICIQLLNKTWKEMRATAEDFNKVMQVVREQITRALPSKPNSLDQFKSKLRSLSYSE 506
Query: 790 ITNLWQQERTSREEWESHAKPIVELKELITPEIVDLIQQQRLGYLVEGTRFTKYSSR 846
I L Q ER S+++++S PIVEL+E I PEI++LI+QQRL L EG+ F K +R
Sbjct: 507 ILRLRQSERMSQDDFQS--PPIVELREKIQPEILELIKQQRLNRLCEGSSFRKIGNR 561
|
Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. Homo sapiens (taxid: 9606) |
| >sp|A4FUD6|ELMO2_BOVIN Engulfment and cell motility protein 2 OS=Bos taurus GN=ELMO2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/117 (59%), Positives = 88/117 (75%), Gaps = 2/117 (1%)
Query: 730 EFYCICIVLLNKTWKEMRATTEDFVKVFSVVREQITRALSSQPASLDKFRANISRLTYSE 789
E + ICI LLNKTWKEMRAT EDF KV VVREQITRAL S+P SLD+F++ + L+YSE
Sbjct: 447 ELFGICIQLLNKTWKEMRATAEDFNKVMQVVREQITRALPSKPNSLDQFKSKLRSLSYSE 506
Query: 790 ITNLWQQERTSREEWESHAKPIVELKELITPEIVDLIQQQRLGYLVEGTRFTKYSSR 846
I L Q ER S+++++S PIVEL+E I PEI++LI+QQRL L EG+ F K +R
Sbjct: 507 ILRLRQSERMSQDDFQS--PPIVELREKIQPEILELIKQQRLNRLCEGSSFRKIGNR 561
|
Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. Bos taurus (taxid: 9913) |
| >sp|Q5RCC1|ELMO2_PONAB Engulfment and cell motility protein 2 OS=Pongo abelii GN=ELMO2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/117 (59%), Positives = 88/117 (75%), Gaps = 2/117 (1%)
Query: 730 EFYCICIVLLNKTWKEMRATTEDFVKVFSVVREQITRALSSQPASLDKFRANISRLTYSE 789
E + ICI LLNKTWKEMRAT EDF KV VVREQITRAL S+P SLD+F++ + L+YSE
Sbjct: 447 ELFGICIQLLNKTWKEMRATAEDFNKVMQVVREQITRALPSKPNSLDQFKSKLRSLSYSE 506
Query: 790 ITNLWQQERTSREEWESHAKPIVELKELITPEIVDLIQQQRLGYLVEGTRFTKYSSR 846
I L Q ER S+++++S PIVEL+E I PEI++LI+QQRL L EG+ F K +R
Sbjct: 507 ILRLRQSERMSQDDFQS--PPIVELREKIQPEILELIKQQRLNRLCEGSSFRKIGNR 561
|
Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. Pongo abelii (taxid: 9601) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1019 | ||||||
| 156551023 | 587 | PREDICTED: pre-mRNA-processing factor 17 | 0.421 | 0.730 | 0.638 | 1e-165 | |
| 21355805 | 576 | CG6015 [Drosophila melanogaster] gi|7300 | 0.522 | 0.923 | 0.490 | 1e-165 | |
| 383865872 | 583 | PREDICTED: pre-mRNA-processing factor 17 | 0.421 | 0.735 | 0.631 | 1e-164 | |
| 91091570 | 562 | PREDICTED: similar to pre-mRNA-processin | 0.442 | 0.802 | 0.584 | 1e-164 | |
| 195330909 | 576 | GM23670 [Drosophila sechellia] gi|194121 | 0.522 | 0.923 | 0.489 | 1e-164 | |
| 195572766 | 576 | GD18480 [Drosophila simulans] gi|1942002 | 0.522 | 0.923 | 0.489 | 1e-164 | |
| 194911327 | 575 | GG12541 [Drosophila erecta] gi|190656968 | 0.522 | 0.925 | 0.493 | 1e-164 | |
| 332017047 | 563 | Pre-mRNA-processing factor 17 [Acromyrme | 0.421 | 0.761 | 0.633 | 1e-164 | |
| 195502464 | 579 | GE24061 [Drosophila yakuba] gi|194184336 | 0.522 | 0.918 | 0.487 | 1e-164 | |
| 380011695 | 578 | PREDICTED: pre-mRNA-processing factor 17 | 0.421 | 0.742 | 0.631 | 1e-164 |
| >gi|156551023|ref|XP_001601045.1| PREDICTED: pre-mRNA-processing factor 17-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust.
Identities = 298/467 (63%), Positives = 347/467 (74%), Gaps = 38/467 (8%)
Query: 176 FENQRRTFASYGYALDPS---SEVESKV-IGASMSGDK--NKTVFESTSKRPLDKRKRNR 229
FENQRRTFASYGYALDP+ S E KV IGA + ++ KTVFE+T+ RP DKRKRNR
Sbjct: 131 FENQRRTFASYGYALDPTVDGSAEEGKVLIGALEAAEETGGKTVFENTAIRPADKRKRNR 190
Query: 230 NDCPEDIEGFLGPWGGYTDEEKVSRPNEAQAAELEEYLAKKQKKGKQSEEKPLEEKTILH 289
ND P DI GFLGPWGG+ DE++V +P++ +AAELEE LAK+ K+GKQ+++KPLEEKT+LH
Sbjct: 191 NDDPTDITGFLGPWGGFVDEKRVIKPSDEEAAELEEILAKRNKRGKQTDDKPLEEKTVLH 250
Query: 290 IKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAH 349
IKD DYQGRSFLH P DVG NLRSD+PP+RCFLPK Q+HTWEGHTKGIS IRWFP +AH
Sbjct: 251 IKDSVDYQGRSFLHAPQDVGVNLRSDSPPERCFLPKAQIHTWEGHTKGISQIRWFPVTAH 310
Query: 350 LLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLL 409
LLLSCSMDCRVKLWEVYKERRC+RTYYGHRQAVRD+ F+N G F+SA
Sbjct: 311 LLLSCSMDCRVKLWEVYKERRCIRTYYGHRQAVRDVSFDNDGKKFLSA------------ 358
Query: 410 SCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTN---FISAGYDRYLKLWDTE 466
D VKLW+ + CV + + R+ FN F++ D+ + WD
Sbjct: 359 --GYDRYVKLWDT-ETGACV-SRFTSRKVPYCAKFNPDPDKQHLFVAGTSDKKIICWDIR 414
Query: 467 SGECISRFTSRKVAYCVKFHPDEDKQHL-------------DIPVDMKYIADPTMHSMPA 513
SGE I + A DE+++ + DIPVDMKYIADPTMHSMPA
Sbjct: 415 SGEIIQEYDRHLGAVNTITFVDENRRFVTTSDDKSLRVWEWDIPVDMKYIADPTMHSMPA 474
Query: 514 VTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISG 573
VT SPN KWLACQSMDNKI+IFSALNRFK+NRKKTF GHMVAGYAC +DFSPDMSYL+SG
Sbjct: 475 VTPSPNQKWLACQSMDNKIVIFSALNRFKMNRKKTFTGHMVAGYACGIDFSPDMSYLVSG 534
Query: 574 DADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDA 620
DADGKCY+WDWKTTKL+KKWKAHD VCISTLWHPHEPS++ TAGWD
Sbjct: 535 DADGKCYVWDWKTTKLYKKWKAHDNVCISTLWHPHEPSRLATAGWDG 581
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|21355805|ref|NP_651005.1| CG6015 [Drosophila melanogaster] gi|7300806|gb|AAF55949.1| CG6015 [Drosophila melanogaster] gi|17862316|gb|AAL39635.1| LD21931p [Drosophila melanogaster] gi|220946744|gb|ACL85915.1| CG6015-PA [synthetic construct] | Back alignment and taxonomy information |
|---|
Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust.
Identities = 323/658 (49%), Positives = 397/658 (60%), Gaps = 126/658 (19%)
Query: 1 MLELQDYGGSSSE----SDAESQTL----------HLKPIESCAFSVAKSLSVCATPAVI 46
ML LQ Y SS E +DA + T HL P++ S++KS++VCA P V+
Sbjct: 1 MLGLQSYASSSDEESDHADAATATTNSEPSAPIPDHLLPVDK-THSLSKSIAVCAAPTVV 59
Query: 47 PKVMESSNLT-DVNTKEITKNLRYEELYAPEYGPVNPFLTQQQRADKNTLSGFVEQAHIN 105
P + T D KE+T N RYEE+YAP GP +P LT
Sbjct: 60 PLGASAVPRTLDPTLKEVTYNPRYEEMYAPVKGPEHPDLT-------------------- 99
Query: 106 SFQFENQRRTFASYGYALDPSSEVESKVIGASTSGDKNKTVFESTSKRPLDKRKRNRNDC 165
Q R T A Y VE I A FE
Sbjct: 100 -MQQRAPRNTLAGY---------VEKAHINA----------FE----------------- 122
Query: 166 PEDIEGFLGPFENQRRTFASYGYALDPSSEVESKVIGASMSGD-------KNKTVFESTS 218
FENQRRTF +YGYALDPS V+ + G S GD KTVFE
Sbjct: 123 ----------FENQRRTFHTYGYALDPS--VDDQADGQSFVGDLQSAYDDNGKTVFEPPK 170
Query: 219 KRPLDKRKRNRNDCPEDIEGFLGPWGGYTDEEKVSRPNEAQAAELEEYLAKKQKKGKQSE 278
+ L RK+ +ND PEDIEGFLGPWG + +E V++PNE + AEL+E L+K+ K+G+ E
Sbjct: 171 AKKL--RKQEKNDNPEDIEGFLGPWGKFENEVSVAKPNEQERAELDELLSKRHKRGRIPE 228
Query: 279 EKPLEEKTILHIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGI 338
+KPLEEK+ LHIKD DYQGRS+LH PHD+G NLRS+ PP +CFLPK +HTW GH KGI
Sbjct: 229 DKPLEEKSTLHIKDAYDYQGRSYLHAPHDLGVNLRSNAPPTKCFLPKAHIHTWSGHNKGI 288
Query: 339 SAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAI 398
S+IRWFPK+AHLLLS SMDCRVKLWEVY ERRC+RT+ GHRQA++DI +NN GTNF+SA
Sbjct: 289 SSIRWFPKTAHLLLSGSMDCRVKLWEVYGERRCIRTFSGHRQAIKDIAWNNRGTNFLSA- 347
Query: 399 RWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICF---NNTGTNFISAG 455
S D +KLW+ E V + + R+ + F N+ F++
Sbjct: 348 -------------SYDRYIKLWDA--ETGDVVSRFTTRKMPFCVKFHPDNSKQHLFVAGT 392
Query: 456 YDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL-------------DIPVDMKY 502
D+ + WDT SG+ + + + D++++ + DIPVDMKY
Sbjct: 393 SDKKIICWDTRSGDIVQEYDRHLGSVSTITFVDDNRRFVTTSDDKSMRIWEWDIPVDMKY 452
Query: 503 IADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562
IADPTMHSMPAVT +PN KW+ACQS+DNKI+IFSALNRFK+NRKKTF GHMV+GYAC LD
Sbjct: 453 IADPTMHSMPAVTLAPNGKWMACQSLDNKIVIFSALNRFKMNRKKTFTGHMVSGYACQLD 512
Query: 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDA 620
FSPDMSYL+SGD DGKCYIWDWKTTK++KKW+AHDGVCIS LWHPHE SKVVTAGWD
Sbjct: 513 FSPDMSYLVSGDGDGKCYIWDWKTTKMYKKWQAHDGVCISALWHPHEASKVVTAGWDG 570
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383865872|ref|XP_003708396.1| PREDICTED: pre-mRNA-processing factor 17-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1513), Expect = e-164, Method: Compositional matrix adjust.
Identities = 295/467 (63%), Positives = 346/467 (74%), Gaps = 38/467 (8%)
Query: 176 FENQRRTFASYGYALDP----SSEVESKVIGASMSGDK--NKTVFESTSKRPLDKRKRNR 229
FENQRRTFASYGYALDP S+E +IGA + ++ KTVFE+T+ RP DKRKR+R
Sbjct: 127 FENQRRTFASYGYALDPTVDGSAEEGRTIIGAKEAAEECGGKTVFENTTLRPSDKRKRHR 186
Query: 230 NDCPEDIEGFLGPWGGYTDEEKVSRPNEAQAAELEEYLAKKQKKGKQSEEKPLEEKTILH 289
ND P DIEGFLGPWGGY DE+++ +P E +AAELEE LAK+ ++GK +EEKPLEEKT+LH
Sbjct: 187 NDDPADIEGFLGPWGGYVDEKRIIKPTEEEAAELEEILAKRNRRGKPTEEKPLEEKTVLH 246
Query: 290 IKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAH 349
IKD DYQGRSFLH P DVG NLRS++PPDRCFLPK Q+HTWEGHTKGIS IRWFP++AH
Sbjct: 247 IKDSVDYQGRSFLHAPQDVGVNLRSESPPDRCFLPKAQIHTWEGHTKGISQIRWFPRTAH 306
Query: 350 LLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLL 409
LLLSCSMDCRVKLWEVYK+RRC+RTYYGHRQAVRDI F+N G F+SA
Sbjct: 307 LLLSCSMDCRVKLWEVYKDRRCIRTYYGHRQAVRDISFDNDGQRFLSA------------ 354
Query: 410 SCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN---NTGTNFISAGYDRYLKLWDTE 466
D VKLW+ + C+ + + R+ + FN + F++ D+ + WD
Sbjct: 355 --GYDRYVKLWDT-ETGACI-SRFTSRKIPYCVKFNPDLDKQHLFVAGTSDKKIICWDVR 410
Query: 467 SGECISRFTSRKVAYCVKFHPDEDKQHL-------------DIPVDMKYIADPTMHSMPA 513
SGE + A DE+++ + DIPVDMKYIADP+MHSMPA
Sbjct: 411 SGEITQEYDRHLGAVNTITFVDENRRFVTTSDDKSLRVWEWDIPVDMKYIADPSMHSMPA 470
Query: 514 VTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISG 573
VT SPN KWLACQSMDNKI+IFSALNRFK+NRKKTF GHMVAGYAC LDFSPDMSYL+SG
Sbjct: 471 VTPSPNQKWLACQSMDNKIVIFSALNRFKMNRKKTFTGHMVAGYACGLDFSPDMSYLVSG 530
Query: 574 DADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDA 620
DADGKCYIWDWKTTKL+KKWKAHDGVCI LWHPHEPS++ TAGWD
Sbjct: 531 DADGKCYIWDWKTTKLYKKWKAHDGVCIDVLWHPHEPSRLATAGWDG 577
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91091570|ref|XP_967396.1| PREDICTED: similar to pre-mRNA-processing factor 17 [Tribolium castaneum] gi|270001029|gb|EEZ97476.1| hypothetical protein TcasGA2_TC011310 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 586 bits (1511), Expect = e-164, Method: Compositional matrix adjust.
Identities = 291/498 (58%), Positives = 353/498 (70%), Gaps = 47/498 (9%)
Query: 154 PLDKRKRNRNDCPEDI-EGFLGP-------FENQRRTFASYGYALDP---SSEVESKVIG 202
P + K + C +I G++ P FENQRRTF S+GYALDP S+ +KV+
Sbjct: 75 PENPFKTQQQQCTRNILSGYVEPAYVNEFQFENQRRTFNSFGYALDPTVGSAAEGTKVVT 134
Query: 203 ASMSGD----KNKTVFESTSKRPLDKRKRNRNDCPEDIEGFLGPWGGYTDEEKVSRPNEA 258
+ D + KTVFEST RPLDKRKR +N+ P DIEGFLGPWGG+ DE++V +P++
Sbjct: 135 TTGQCDDIDPEAKTVFESTKLRPLDKRKRKKNNDPSDIEGFLGPWGGFVDEQRVMKPSDE 194
Query: 259 QAAELEEYLAKKQKKGKQSEEKPLEEKTILHIKDPTDYQGRSFLHPPHDVGTNLRSDTPP 318
+AAEL+E L+KK KKGK +E+KP+EEK+ILHI D DYQGRSFLH P DVG NL+SD+PP
Sbjct: 195 EAAELDELLSKKNKKGKPTEDKPIEEKSILHISDAVDYQGRSFLHAPQDVGVNLKSDSPP 254
Query: 319 DRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGH 378
++CFLPK +HTW GH+KGI+AIRWFP++AHLLLS SMDCR+KLWEVY ERR VRTYYGH
Sbjct: 255 EKCFLPKAHIHTWSGHSKGIAAIRWFPRTAHLLLSASMDCRIKLWEVYNERRLVRTYYGH 314
Query: 379 RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQA 438
+QAVRDICFNN+G L LS D +KLW+ E V + R+
Sbjct: 315 KQAVRDICFNNSG--------------KLFLSAGYDRYIKLWDT--ETGQVVKRFSSRKI 358
Query: 439 VRDICFN---NTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL- 494
I FN N F++ D+ + WDT SG+ + + A D++++ +
Sbjct: 359 PYCIKFNPDKNKQHLFVAGTSDKKIICWDTRSGDIVQEYDRHLGAVNSITFVDDNRRFVT 418
Query: 495 ------------DIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFK 542
DIPVDMKYIADPTMHSMPAVT +PN KWLACQSMDNKI+IFSALNRFK
Sbjct: 419 TSDDKSLRVWEWDIPVDMKYIADPTMHSMPAVTPAPNGKWLACQSMDNKIVIFSALNRFK 478
Query: 543 LNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCIS 602
+NRKKTF GHMVAGYAC+LDFSPD+SYL+SGDADGKCYIWDWKTTKL+KKWKAHD VCIS
Sbjct: 479 INRKKTFTGHMVAGYACTLDFSPDLSYLVSGDADGKCYIWDWKTTKLYKKWKAHDNVCIS 538
Query: 603 TLWHPHEPSKVVTAGWDA 620
LWHPHEPSK+VTAGWD
Sbjct: 539 VLWHPHEPSKLVTAGWDG 556
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195330909|ref|XP_002032145.1| GM23670 [Drosophila sechellia] gi|194121088|gb|EDW43131.1| GM23670 [Drosophila sechellia] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust.
Identities = 322/658 (48%), Positives = 395/658 (60%), Gaps = 126/658 (19%)
Query: 1 MLELQDYGGSS-SESDAESQTL-------------HLKPIESCAFSVAKSLSVCATPAVI 46
ML LQ Y SS ESD E HL P++ S++ S++VCA P V+
Sbjct: 1 MLGLQSYASSSDGESDHEDAATATTNSESSAPIPDHLLPVDKT-HSLSNSIAVCAAPTVV 59
Query: 47 PKVMESSNLT-DVNTKEITKNLRYEELYAPEYGPVNPFLTQQQRADKNTLSGFVEQAHIN 105
P + T D KE+T N RYEE+YAP GP +P LT
Sbjct: 60 PLGASAVPRTLDPTLKEVTYNPRYEEMYAPVKGPEHPDLT-------------------- 99
Query: 106 SFQFENQRRTFASYGYALDPSSEVESKVIGASTSGDKNKTVFESTSKRPLDKRKRNRNDC 165
Q R T A Y VE I A FE
Sbjct: 100 -MQQRAPRNTLAGY---------VEKAHINA----------FE----------------- 122
Query: 166 PEDIEGFLGPFENQRRTFASYGYALDPSSEVESKVIGASMSGD-------KNKTVFESTS 218
FENQRRTF +YGYALDPS V+ + G S GD KTVFE+
Sbjct: 123 ----------FENQRRTFHTYGYALDPS--VDDQADGQSFVGDLQSAYDDNGKTVFEAPK 170
Query: 219 KRPLDKRKRNRNDCPEDIEGFLGPWGGYTDEEKVSRPNEAQAAELEEYLAKKQKKGKQSE 278
+ L RK+ +ND PEDIEGFLGPWG + +E V++PNE + AEL+E L+K+ K+G+ E
Sbjct: 171 AKKL--RKQEKNDNPEDIEGFLGPWGKFENEVSVAKPNEQERAELDELLSKRHKRGRIPE 228
Query: 279 EKPLEEKTILHIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGI 338
+KPLEEK+ LHIKD DYQGRS+LH PHD+G NLRS+ PP +CFLPK +HTW GH KGI
Sbjct: 229 DKPLEEKSTLHIKDAYDYQGRSYLHAPHDLGVNLRSNAPPTKCFLPKAHIHTWSGHNKGI 288
Query: 339 SAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAI 398
S+IRWFPK+AHLLLS SMDCRVKLWEVY ERRC+RT+ GHRQA++DI +NN GTNF+SA
Sbjct: 289 SSIRWFPKTAHLLLSGSMDCRVKLWEVYGERRCIRTFSGHRQAIKDIAWNNRGTNFLSA- 347
Query: 399 RWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICF---NNTGTNFISAG 455
S D +KLW+ E V + + R+ + F N+ F++
Sbjct: 348 -------------SYDRYIKLWDA--ETGDVVSRFTTRKMPFCVKFHPDNSKQHLFVAGT 392
Query: 456 YDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL-------------DIPVDMKY 502
D+ + WDT SG+ + + + D++++ + DIPVDMKY
Sbjct: 393 SDKKIICWDTRSGDIVQEYDRHLGSVSTITFVDDNRRFVTTSDDKSMRIWEWDIPVDMKY 452
Query: 503 IADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562
IADPTMHSMPAVT +PN KW+ACQS+DNKI+IFSALNRFK+NRKKTF GHMV+GYAC LD
Sbjct: 453 IADPTMHSMPAVTLAPNGKWMACQSLDNKIVIFSALNRFKMNRKKTFTGHMVSGYACQLD 512
Query: 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDA 620
FSPDMSYL+SGD DGKCYIWDWKTTK++KKW+AHDGVCIS LWHPHE SKVVTAGWD
Sbjct: 513 FSPDMSYLVSGDGDGKCYIWDWKTTKMYKKWQAHDGVCISALWHPHEASKVVTAGWDG 570
|
Source: Drosophila sechellia Species: Drosophila sechellia Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195572766|ref|XP_002104366.1| GD18480 [Drosophila simulans] gi|194200293|gb|EDX13869.1| GD18480 [Drosophila simulans] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 322/658 (48%), Positives = 395/658 (60%), Gaps = 126/658 (19%)
Query: 1 MLELQDYGGSS-SESDAESQTL-------------HLKPIESCAFSVAKSLSVCATPAVI 46
ML LQ Y SS ESD E HL P++ S++ S++VCA P V+
Sbjct: 1 MLGLQSYASSSDGESDHEDAATATTNSESSAPIPDHLLPVDKT-HSLSTSIAVCAAPTVV 59
Query: 47 PKVMESSNLT-DVNTKEITKNLRYEELYAPEYGPVNPFLTQQQRADKNTLSGFVEQAHIN 105
P + T D KE+T N RYEE+YAP GP +P LT
Sbjct: 60 PIGASAVPRTLDPTLKEVTYNPRYEEMYAPVKGPEHPDLT-------------------- 99
Query: 106 SFQFENQRRTFASYGYALDPSSEVESKVIGASTSGDKNKTVFESTSKRPLDKRKRNRNDC 165
Q R T A Y VE I A FE
Sbjct: 100 -MQQRAPRNTLAGY---------VEKAHINA----------FE----------------- 122
Query: 166 PEDIEGFLGPFENQRRTFASYGYALDPSSEVESKVIGASMSGD-------KNKTVFESTS 218
FENQRRTF +YGYALDPS V+ + G S GD KTVFE+
Sbjct: 123 ----------FENQRRTFHTYGYALDPS--VDDQADGQSFVGDLQSAYDDNGKTVFEAPK 170
Query: 219 KRPLDKRKRNRNDCPEDIEGFLGPWGGYTDEEKVSRPNEAQAAELEEYLAKKQKKGKQSE 278
+ L RK+ +ND PEDIEGFLGPWG + +E V++PNE + AEL+E L+K+ K+G+ E
Sbjct: 171 AKKL--RKQEKNDNPEDIEGFLGPWGKFENEVSVAKPNEQERAELDELLSKRHKRGRIPE 228
Query: 279 EKPLEEKTILHIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGI 338
+KPLEEK+ LHIKD DYQGRS+LH PHD+G NLRS+ PP +CFLPK +HTW GH KGI
Sbjct: 229 DKPLEEKSTLHIKDAYDYQGRSYLHAPHDLGVNLRSNAPPTKCFLPKAHIHTWSGHNKGI 288
Query: 339 SAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAI 398
S+IRWFPK+AHLLLS SMDCRVKLWEVY ERRC+RT+ GHRQA++DI +NN GTNF+SA
Sbjct: 289 SSIRWFPKTAHLLLSGSMDCRVKLWEVYGERRCIRTFSGHRQAIKDIAWNNRGTNFLSA- 347
Query: 399 RWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICF---NNTGTNFISAG 455
S D +KLW+ E V + + R+ + F N+ F++
Sbjct: 348 -------------SYDRYIKLWDA--ETGDVVSRFTTRKMPFCVKFHPDNSKQHLFVAGT 392
Query: 456 YDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL-------------DIPVDMKY 502
D+ + WDT SG+ + + + D++++ + DIPVDMKY
Sbjct: 393 SDKKIICWDTRSGDIVQEYDRHLGSVSTITFVDDNRRFVTTSDDKSMRIWEWDIPVDMKY 452
Query: 503 IADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562
IADPTMHSMPAVT +PN KW+ACQS+DNKI+IFSALNRFK+NRKKTF GHMV+GYAC LD
Sbjct: 453 IADPTMHSMPAVTLAPNGKWMACQSLDNKIVIFSALNRFKMNRKKTFTGHMVSGYACQLD 512
Query: 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDA 620
FSPDMSYL+SGD DGKCYIWDWKTTK++KKW+AHDGVCIS LWHPHE SKVVTAGWD
Sbjct: 513 FSPDMSYLVSGDGDGKCYIWDWKTTKMYKKWQAHDGVCISALWHPHEASKVVTAGWDG 570
|
Source: Drosophila simulans Species: Drosophila simulans Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194911327|ref|XP_001982330.1| GG12541 [Drosophila erecta] gi|190656968|gb|EDV54200.1| GG12541 [Drosophila erecta] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 324/657 (49%), Positives = 398/657 (60%), Gaps = 125/657 (19%)
Query: 1 MLELQDYGGSS-SESD---------AESQTL---HLKPIESCAFSVAKSLSVCATPAVIP 47
ML LQ Y SS ESD +ES T HL P++ S++ S++VCA P VIP
Sbjct: 1 MLGLQTYASSSEGESDHEDTASAAKSESSTPIPDHLLPVDK-THSLSNSIAVCAAPTVIP 59
Query: 48 KVMESSNLT-DVNTKEITKNLRYEELYAPEYGPVNPFLTQQQRADKNTLSGFVEQAHINS 106
+ T D KE+T N RYEE+YAP GP +P LT
Sbjct: 60 LGASAVPRTLDPTLKEVTYNPRYEEMYAPVKGPEHPDLT--------------------- 98
Query: 107 FQFENQRRTFASYGYALDPSSEVESKVIGASTSGDKNKTVFESTSKRPLDKRKRNRNDCP 166
Q R T A Y VE I A FE
Sbjct: 99 MQQRAPRNTLAGY---------VEKAHINA----------FE------------------ 121
Query: 167 EDIEGFLGPFENQRRTFASYGYALDPSSEVESKVIGASMSGD-------KNKTVFESTSK 219
FENQRRTF +YGYALDPS V+ + G S GD KTVFE+
Sbjct: 122 ---------FENQRRTFHTYGYALDPS--VDEQADGQSFVGDLQSAYDDNGKTVFEAPKA 170
Query: 220 RPLDKRKRNRNDCPEDIEGFLGPWGGYTDEEKVSRPNEAQAAELEEYLAKKQKKGKQSEE 279
+ L RK+ +ND PEDIEGFLGPWG + +E V++PNE + AEL+E L+K+ K+G+ E+
Sbjct: 171 KKL--RKQEKNDNPEDIEGFLGPWGKFENEVSVAKPNEQERAELDELLSKRHKRGRIPED 228
Query: 280 KPLEEKTILHIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGIS 339
KPLEEK+ LHIKD DYQGRS+LH PHD+G NLRS+ PP +CFLPK +HTW GH KGIS
Sbjct: 229 KPLEEKSTLHIKDAYDYQGRSYLHAPHDLGVNLRSNAPPPKCFLPKAHIHTWSGHNKGIS 288
Query: 340 AIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIR 399
+IRWFPK+AHLLLS SMDCRVKLWEVY +RRC+RT+ GHRQA++DI +NN GTNF+SA
Sbjct: 289 SIRWFPKTAHLLLSGSMDCRVKLWEVYGDRRCIRTFSGHRQAIKDIAWNNRGTNFLSA-- 346
Query: 400 WFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICF---NNTGTNFISAGY 456
S D +KLW+ E V + + R+ + F N+ F++
Sbjct: 347 ------------SYDRYIKLWDA--ETGDVVSRFTTRKMPFCVKFHPDNSKQHLFVAGTS 392
Query: 457 DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL-------------DIPVDMKYI 503
D+ + WDT SG+ + + + D++++ + DIPVDMKYI
Sbjct: 393 DKKIICWDTRSGDIVQEYDRHLGSVSTITFVDDNRRFVTTSDDKSMRIWEWDIPVDMKYI 452
Query: 504 ADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDF 563
ADPTMHSMPAVT +PN KW+ACQS+DNKI+IFSALNRFK+NRKKTF GHMV+GYAC LDF
Sbjct: 453 ADPTMHSMPAVTLAPNGKWMACQSLDNKIVIFSALNRFKMNRKKTFTGHMVSGYACQLDF 512
Query: 564 SPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDA 620
SPDMSYL+SGD DGKCYIWDWKTTK++KKW+AHDGVCIS LWHPHE SKVVTAGWD
Sbjct: 513 SPDMSYLVSGDGDGKCYIWDWKTTKMYKKWQAHDGVCISALWHPHEASKVVTAGWDG 569
|
Source: Drosophila erecta Species: Drosophila erecta Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332017047|gb|EGI57846.1| Pre-mRNA-processing factor 17 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 296/467 (63%), Positives = 348/467 (74%), Gaps = 38/467 (8%)
Query: 176 FENQRRTFASYGYALDP----SSEVESKVIGASMSGDKN--KTVFESTSKRPLDKRKRNR 229
FENQRRTFASYGYALDP S+E +IGA+ + +++ KTVFE+T+ RP DKRKR+R
Sbjct: 107 FENQRRTFASYGYALDPTVDGSAEEGRIMIGATEAAEESGGKTVFENTTLRPSDKRKRHR 166
Query: 230 NDCPEDIEGFLGPWGGYTDEEKVSRPNEAQAAELEEYLAKKQKKGKQSEEKPLEEKTILH 289
N+ P DIEGFLGPWGGY DE++V +P++ +AAELEE LAK+ K+GKQ+EEKPLEEKT+LH
Sbjct: 167 NNNPSDIEGFLGPWGGYIDEKRVVKPSDEEAAELEEILAKRNKRGKQTEEKPLEEKTVLH 226
Query: 290 IKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAH 349
IKD DYQGRSFLH P DVG NLRS++PPDRCFLPK Q+HTWEGHTKGIS IRWFP++AH
Sbjct: 227 IKDSVDYQGRSFLHAPQDVGVNLRSESPPDRCFLPKAQIHTWEGHTKGISQIRWFPRTAH 286
Query: 350 LLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLL 409
LLLSCSMDCRVKLWEVYK+RRCVRTYYGHRQAVRDI F+N G F+SA
Sbjct: 287 LLLSCSMDCRVKLWEVYKDRRCVRTYYGHRQAVRDISFDNDGKRFLSA------------ 334
Query: 410 SCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTN---FISAGYDRYLKLWDTE 466
+ D VKLW+ + C+ + + R+ FN F++ D+ + WD
Sbjct: 335 --AYDRYVKLWDT-ETGACI-SRFTSRKIPYCAKFNPDPDKQHLFVAGTSDKKIICWDIR 390
Query: 467 SGECISRFTSRKVAYCVKFHPDEDKQHL-------------DIPVDMKYIADPTMHSMPA 513
SGE + A DE+++ + DIPVDMKYIADP+MHSMPA
Sbjct: 391 SGEITQEYDRHLGAVNTITFVDENRRFVTTSDDKSLRVWEWDIPVDMKYIADPSMHSMPA 450
Query: 514 VTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISG 573
VT S N KWLACQSMDNKI+IFSALNRFK+NRKKTF GHMVAGYAC LDFSPDMSYL+SG
Sbjct: 451 VTPSRNQKWLACQSMDNKIVIFSALNRFKMNRKKTFTGHMVAGYACGLDFSPDMSYLVSG 510
Query: 574 DADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDA 620
DADGKCYIWDWKTTKL+KKWKAHDGVCI LWHPHEPS++ TAGWD
Sbjct: 511 DADGKCYIWDWKTTKLYKKWKAHDGVCIDVLWHPHEPSRLATAGWDG 557
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195502464|ref|XP_002098235.1| GE24061 [Drosophila yakuba] gi|194184336|gb|EDW97947.1| GE24061 [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 322/661 (48%), Positives = 395/661 (59%), Gaps = 129/661 (19%)
Query: 1 MLELQDYGGSS-SESDAESQTL----------------HLKPIESCAFSVAKSLSVCATP 43
ML LQ Y SS ESD E HL P++ S++ S++VCA P
Sbjct: 1 MLGLQTYASSSEGESDHEDAGATATAGTKSESSAPIPDHLLPVDKT-HSLSNSIAVCAAP 59
Query: 44 AVIPKVMESSNLT-DVNTKEITKNLRYEELYAPEYGPVNPFLTQQQRADKNTLSGFVEQA 102
V+P + T D KE+T N RYEE+YAP GP +P LT
Sbjct: 60 TVVPLGASAVPRTLDPTLKEVTYNPRYEEMYAPVKGPEHPDLT----------------- 102
Query: 103 HINSFQFENQRRTFASYGYALDPSSEVESKVIGASTSGDKNKTVFESTSKRPLDKRKRNR 162
Q R T A Y VE I A FE
Sbjct: 103 ----MQQRAPRNTLAGY---------VEKAHINA----------FE-------------- 125
Query: 163 NDCPEDIEGFLGPFENQRRTFASYGYALDPSSEVESKVIGASMSGD-------KNKTVFE 215
FENQRRTF +YGYALDPS V+ + G S GD KTVFE
Sbjct: 126 -------------FENQRRTFHTYGYALDPS--VDEQADGQSFVGDLQSAYDDNGKTVFE 170
Query: 216 STSKRPLDKRKRNRNDCPEDIEGFLGPWGGYTDEEKVSRPNEAQAAELEEYLAKKQKKGK 275
+ + L RK+ +ND PEDIEGFLGPWG + +E V++PNE + AEL+E L+K+ K+G+
Sbjct: 171 APKAKKL--RKQEKNDNPEDIEGFLGPWGKFENEVSVAKPNEQERAELDELLSKRHKRGR 228
Query: 276 QSEEKPLEEKTILHIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHT 335
E+KPLEEK+ LHIKD DYQGRS+LH PHD+G NLRS+ PP +CFLPK +HTW GH
Sbjct: 229 IPEDKPLEEKSTLHIKDAYDYQGRSYLHAPHDLGVNLRSNAPPPKCFLPKAHIHTWSGHN 288
Query: 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFI 395
KGIS+IRWFPK+AHLLLS SMDCRVKLWEVY ERRC+RT+ GHRQA++DI +NN GTNF+
Sbjct: 289 KGISSIRWFPKTAHLLLSGSMDCRVKLWEVYGERRCIRTFSGHRQAIKDIAWNNKGTNFL 348
Query: 396 SAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICF---NNTGTNFI 452
SA S D +KLW+ E V + + R+ + F N+ F+
Sbjct: 349 SA--------------SYDRYIKLWDA--ETGDVVSRFTTRKMPFCVKFHPDNSKQHLFV 392
Query: 453 SAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL-------------DIPVD 499
+ D+ + WDT SG+ + + + D++++ + DIPVD
Sbjct: 393 AGTSDKKIICWDTRSGDIVQEYDRHLGSVSTITFVDDNRRFVTTSDDKSMRIWEWDIPVD 452
Query: 500 MKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYAC 559
MKYIADPTMHSMPAVT +PN KW+ACQS+DNKI+IFSALNRFK+NRKKTF GHMV+GYAC
Sbjct: 453 MKYIADPTMHSMPAVTLAPNGKWMACQSLDNKIVIFSALNRFKMNRKKTFTGHMVSGYAC 512
Query: 560 SLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619
LDFSPDMSYL+SGD DGKCYIWDWKTTK++KKW+AHDGVCIS LWHPHE SKVVTAGWD
Sbjct: 513 QLDFSPDMSYLVSGDGDGKCYIWDWKTTKMYKKWQAHDGVCISALWHPHEASKVVTAGWD 572
Query: 620 A 620
Sbjct: 573 G 573
|
Source: Drosophila yakuba Species: Drosophila yakuba Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380011695|ref|XP_003689933.1| PREDICTED: pre-mRNA-processing factor 17-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 295/467 (63%), Positives = 346/467 (74%), Gaps = 38/467 (8%)
Query: 176 FENQRRTFASYGYALDP----SSEVESKVIGASMSGDKN--KTVFESTSKRPLDKRKRNR 229
FENQRRTFASYGYALDP S+E +IGA + +++ KTVFEST+ R DKRKR+R
Sbjct: 122 FENQRRTFASYGYALDPTVDGSAEEGKTIIGAKDAAEESGCKTVFESTTLRASDKRKRHR 181
Query: 230 NDCPEDIEGFLGPWGGYTDEEKVSRPNEAQAAELEEYLAKKQKKGKQSEEKPLEEKTILH 289
ND P DIEGFLGPWGGY DE+++ +P E +AAELEE LAK+ ++GK +EEKPLEEKT+LH
Sbjct: 182 NDDPADIEGFLGPWGGYVDEKRIIKPTEEEAAELEEILAKRNRRGKPAEEKPLEEKTVLH 241
Query: 290 IKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAH 349
IKD DYQGRSFLH P DVG NLRS++PPDRCFLPK Q+HTWEGHTKGIS IRWFP++AH
Sbjct: 242 IKDSVDYQGRSFLHAPQDVGVNLRSESPPDRCFLPKAQIHTWEGHTKGISQIRWFPRTAH 301
Query: 350 LLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLL 409
LLLSCSMDCRVKLWEVYK+RRC+RTYYGHRQAVRDI F+N G F+SA
Sbjct: 302 LLLSCSMDCRVKLWEVYKDRRCIRTYYGHRQAVRDISFDNDGKKFLSA------------ 349
Query: 410 SCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN---NTGTNFISAGYDRYLKLWDTE 466
D VKLW+ + C+ + + R+ + FN + F++ D+ + WD
Sbjct: 350 --GYDRYVKLWDT-ETGACI-SRFTSRKIPYCVKFNPDPDKQHLFVAGTSDKKIICWDIR 405
Query: 467 SGECISRFTSRKVAYCVKFHPDEDKQHL-------------DIPVDMKYIADPTMHSMPA 513
SGE + A DE+++ + DIPVDMKYIADP+MHSMPA
Sbjct: 406 SGEITQEYDRHLGAVNTITFVDENRRFVTTSDDKSLRVWEWDIPVDMKYIADPSMHSMPA 465
Query: 514 VTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISG 573
VT SPN KWLACQSMDNKI+IFSALNRFK+NRKKTF GHMVAGYAC LDFSPDMSYL+SG
Sbjct: 466 VTPSPNQKWLACQSMDNKIVIFSALNRFKMNRKKTFTGHMVAGYACGLDFSPDMSYLVSG 525
Query: 574 DADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDA 620
DADGKCYIWDWKTTKL+KKWKAHDGVCI LWHPHEPS++ TAGWD
Sbjct: 526 DADGKCYIWDWKTTKLYKKWKAHDGVCIDVLWHPHEPSRLATAGWDG 572
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1019 | ||||||
| FB|FBgn0038927 | 576 | CG6015 [Drosophila melanogaste | 0.416 | 0.736 | 0.561 | 1.6e-134 | |
| UNIPROTKB|F1NQ45 | 580 | CDC40 "Uncharacterized protein | 0.426 | 0.75 | 0.511 | 1.5e-124 | |
| ZFIN|ZDB-GENE-050116-3 | 578 | cdc40 "cell division cycle 40 | 0.426 | 0.752 | 0.518 | 6.3e-124 | |
| UNIPROTKB|F1RSY9 | 579 | CDC40 "Uncharacterized protein | 0.426 | 0.751 | 0.507 | 1.7e-123 | |
| UNIPROTKB|E2RSW2 | 663 | CDC40 "Uncharacterized protein | 0.426 | 0.656 | 0.507 | 1.7e-123 | |
| UNIPROTKB|F1MBS9 | 579 | CDC40 "Uncharacterized protein | 0.426 | 0.751 | 0.507 | 1.7e-123 | |
| UNIPROTKB|O60508 | 579 | CDC40 "Pre-mRNA-processing fac | 0.426 | 0.751 | 0.509 | 2.1e-123 | |
| MGI|MGI:1918963 | 579 | Cdc40 "cell division cycle 40" | 0.426 | 0.751 | 0.507 | 2.7e-123 | |
| UNIPROTKB|F1LMQ0 | 447 | Cdc40 "Protein Cdc40" [Rattus | 0.410 | 0.935 | 0.502 | 5.4e-118 | |
| RGD|1307063 | 444 | Cdc40 "cell division cycle 40" | 0.408 | 0.936 | 0.504 | 1.4e-117 |
| FB|FBgn0038927 CG6015 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1318 (469.0 bits), Expect = 1.6e-134, P = 1.6e-134
Identities = 262/467 (56%), Positives = 314/467 (67%)
Query: 176 FENQRRTFASYGYALDPSSEVESKVIGASMSGD-------KNKTVFESTSKRPLDKRKRN 228
FENQRRTF +YGYALDPS V+ + G S GD KTVFE + L RK+
Sbjct: 123 FENQRRTFHTYGYALDPS--VDDQADGQSFVGDLQSAYDDNGKTVFEPPKAKKL--RKQE 178
Query: 229 RNDCPEDIEGFLGPWGGYTDEEKVSRPNXXXXXXXXXXXXXXXXXXXXXXXXPLEEKTIL 288
+ND PEDIEGFLGPWG + +E V++PN PLEEK+ L
Sbjct: 179 KNDNPEDIEGFLGPWGKFENEVSVAKPNEQERAELDELLSKRHKRGRIPEDKPLEEKSTL 238
Query: 289 HIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSA 348
HIKD DYQGRS+LH PHD+G NLRS+ PP +CFLPK +HTW GH KGIS+IRWFPK+A
Sbjct: 239 HIKDAYDYQGRSYLHAPHDLGVNLRSNAPPTKCFLPKAHIHTWSGHNKGISSIRWFPKTA 298
Query: 349 HLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLL 408
HLLLS SMDCRVKLWEVY ERRC+RT+ GHRQA++DI +NN GTNF+SA
Sbjct: 299 HLLLSGSMDCRVKLWEVYGERRCIRTFSGHRQAIKDIAWNNRGTNFLSA----------- 347
Query: 409 LSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTN---FISAGYDRYLKLWDT 465
S D +KLW+ E V + + R+ + F+ + F++ D+ + WDT
Sbjct: 348 ---SYDRYIKLWDA--ETGDVVSRFTTRKMPFCVKFHPDNSKQHLFVAGTSDKKIICWDT 402
Query: 466 ESGECISRFTSRKVAYC-VKFHPD--------EDKQ----HLDIPVDMKYIADPTMHSMP 512
SG+ + + + + F D +DK DIPVDMKYIADPTMHSMP
Sbjct: 403 RSGDIVQEYDRHLGSVSTITFVDDNRRFVTTSDDKSMRIWEWDIPVDMKYIADPTMHSMP 462
Query: 513 AVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLIS 572
AVT +PN KW+ACQS+DNKI+IFSALNRFK+NRKKTF GHMV+GYAC LDFSPDMSYL+S
Sbjct: 463 AVTLAPNGKWMACQSLDNKIVIFSALNRFKMNRKKTFTGHMVSGYACQLDFSPDMSYLVS 522
Query: 573 GDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619
GD DGKCYIWDWKTTK++KKW+AHDGVCIS LWHPHE SKVVTAGWD
Sbjct: 523 GDGDGKCYIWDWKTTKMYKKWQAHDGVCISALWHPHEASKVVTAGWD 569
|
|
| UNIPROTKB|F1NQ45 CDC40 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1224 (435.9 bits), Expect = 1.5e-124, P = 1.5e-124
Identities = 243/475 (51%), Positives = 311/475 (65%)
Query: 166 PEDIEGFLGPFENQRRTFASYGYALDPS---SEVESKVIGASMSGDKNK--TVFESTSKR 220
P I F+ FE QRRTF +YGYALDPS EV +K IG+ +KN+ TVFE T ++
Sbjct: 118 PAHINDFM--FEQQRRTFVTYGYALDPSIDNPEVATKYIGSVEEAEKNQGLTVFE-TGQK 174
Query: 221 PLDKRKRNRNDCPEDIEGFLGPWGGYTDEEKVSRPNXXXXXXXXXXXXXXXXXXXXXXXX 280
++KRK+ + + +I+GFLGPW Y DE++V++P+
Sbjct: 175 KIEKRKKFKENDASNIDGFLGPWAKYVDEKEVAKPSEEEQKELDEITAKRQKRGKLEDDK 234
Query: 281 PLEEKTILHIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISA 340
P EEKTILH+K+ DYQGRS+LH P DVG NLRS PP++C+LPK Q+H W GHTKG+SA
Sbjct: 235 PGEEKTILHVKEMYDYQGRSYLHVPQDVGVNLRSTMPPEKCYLPKKQIHVWSGHTKGVSA 294
Query: 341 IRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRW 400
+R FP S H+LLSCSMDC++KLWEVY +RRC+RT+ GH +AVRDICFNN GT F+SA
Sbjct: 295 VRLFPLSGHMLLSCSMDCKIKLWEVYGDRRCLRTFIGHGKAVRDICFNNAGTRFLSA--- 351
Query: 401 FPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN--NTGTNFISAGY-D 457
+ D +KLW+ + +C+ + + +R+ + FN N AG D
Sbjct: 352 -----------AYDRYIKLWDT-ETGQCI-SRFTNRKVPYCVKFNPDEDKQNLFVAGMSD 398
Query: 458 RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL-------------DIPVDMKYIA 504
+ + WD SGE + + A DE+++ + DIPVD KYIA
Sbjct: 399 KKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIA 458
Query: 505 DPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564
+P+MHSMPAVT SPN KWLACQSMDN+ILIF A NRF+LN+KK F+GHMVAGYAC +DFS
Sbjct: 459 EPSMHSMPAVTLSPNGKWLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFS 518
Query: 565 PDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619
PDMSY+ISGDADGK IWDWKTTKL+ + KAHD VCI +WHPHE SKV+T GWD
Sbjct: 519 PDMSYVISGDADGKLNIWDWKTTKLYSRIKAHDKVCIGAVWHPHETSKVITCGWD 573
|
|
| ZFIN|ZDB-GENE-050116-3 cdc40 "cell division cycle 40 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1218 (433.8 bits), Expect = 6.3e-124, P = 6.3e-124
Identities = 247/476 (51%), Positives = 309/476 (64%)
Query: 166 PEDIEGFLGPFENQRRTFASYGYALDPS---SEVESK-VIGASMSGDKNK--TVFESTSK 219
P + F+ FE QRRTF+++GYALDPS S+ S IGA +KNK TVFE+ K
Sbjct: 115 PAHVNDFM--FEQQRRTFSTFGYALDPSVDTSQASSNSYIGAIEEAEKNKGLTVFETGPK 172
Query: 220 RPLDKRKRNRNDCPEDIEGFLGPWGGYTDEEKVSRPNXXXXXXXXXXXXXXXXXXXXXXX 279
+ +KRK+ + DI+ FLGPW Y DE+ V++P+
Sbjct: 173 KS-EKRKKVKGGEAADIDNFLGPWAKYQDEKDVAKPSEDEQKELDEITAKRQKRGKNEEE 231
Query: 280 XPLEEKTILHIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGIS 339
P EEKT+LHIKD DYQGRS+LH P DVG NLRS PD+C+LPK Q+H W GHTKG+S
Sbjct: 232 SPAEEKTVLHIKDAYDYQGRSYLHIPQDVGINLRSADIPDKCYLPKKQLHVWTGHTKGVS 291
Query: 340 AIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIR 399
AIR FPKS HLLLSCSMDC++KLWEVY ERRCVRT+ GH +AVRD+CFNN+GT F+SA
Sbjct: 292 AIRLFPKSGHLLLSCSMDCKIKLWEVYNERRCVRTFIGHSKAVRDVCFNNSGTQFLSA-- 349
Query: 400 WFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN--NTGTNFISAGY- 456
+ D +KLW+ + +C+ + + +R+ + FN N + AG
Sbjct: 350 ------------AYDRYIKLWDS-ETGQCI-SRFTNRKVPYCVKFNPDEDKQNLLVAGMS 395
Query: 457 DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL-------------DIPVDMKYI 503
D+ + WD SGE + + A DE+++ + DIP D KYI
Sbjct: 396 DKKIVQWDIRSGEVVQEYDRHLGAVNTITFVDENRRFVSTSDDKSLRVWEWDIPADFKYI 455
Query: 504 ADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDF 563
A+P+MHSMPAVT SPN KWLACQSMDN+ILIF A NRF+LN+KK F+GHMVAGYAC +DF
Sbjct: 456 AEPSMHSMPAVTLSPNGKWLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDF 515
Query: 564 SPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619
SPDMSY++SGDADGK IWDWKTTKL+ + KAHD VCIS LWHPHE SKV+T GWD
Sbjct: 516 SPDMSYVVSGDADGKLNIWDWKTTKLYHRIKAHDKVCISALWHPHETSKVITCGWD 571
|
|
| UNIPROTKB|F1RSY9 CDC40 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
Identities = 241/475 (50%), Positives = 310/475 (65%)
Query: 166 PEDIEGFLGPFENQRRTFASYGYALDPS---SEVESKVIGASMSGDKNK--TVFESTSKR 220
P I F+ FE QRRTFA+YGYALDPS +V +K IG+ +KN+ TVFE T ++
Sbjct: 117 PAHINDFM--FEQQRRTFATYGYALDPSLDNHQVSTKYIGSVEEAEKNQGLTVFE-TGQK 173
Query: 221 PLDKRKRNRNDCPEDIEGFLGPWGGYTDEEKVSRPNXXXXXXXXXXXXXXXXXXXXXXXX 280
++KRK+ + + +I+GFLGPW Y DE+ V++P+
Sbjct: 174 KIEKRKKFKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEK 233
Query: 281 PLEEKTILHIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISA 340
P EEKTILH+K+ DYQGRS+LH P DVG NLRS PP++C+LPK Q+H W GHTKG+SA
Sbjct: 234 PGEEKTILHVKEMYDYQGRSYLHIPQDVGVNLRSTVPPEKCYLPKKQIHVWSGHTKGVSA 293
Query: 341 IRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRW 400
+R FP S HLLLSCSMDC++KLWEVY +RRC+RT+ GH +AVRDICFN GT F+SA
Sbjct: 294 VRLFPLSGHLLLSCSMDCKIKLWEVYGDRRCLRTFIGHSKAVRDICFNTAGTQFLSA--- 350
Query: 401 FPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN--NTGTNFISAGY-D 457
+ D +KLW+ + +C+ + + +R+ + FN N AG D
Sbjct: 351 -----------AYDRYLKLWDT-ETGQCI-SRFTNRKVPYCVKFNPDEDKQNLFVAGMSD 397
Query: 458 RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL-------------DIPVDMKYIA 504
+ + WD SGE + + A DE+++ + DIPVD KYIA
Sbjct: 398 KKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIA 457
Query: 505 DPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564
+P+MHSMPAVT SPN KWLACQSMDN+ILIF A NRF+LN+KK F+GHMVAGYAC +DFS
Sbjct: 458 EPSMHSMPAVTLSPNGKWLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFS 517
Query: 565 PDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619
PDMSY+ISGD +GK IWDWKTTKL+ ++KAHD VCI +WHPHE SKV+T GWD
Sbjct: 518 PDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWD 572
|
|
| UNIPROTKB|E2RSW2 CDC40 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
Identities = 241/475 (50%), Positives = 310/475 (65%)
Query: 166 PEDIEGFLGPFENQRRTFASYGYALDPS---SEVESKVIGASMSGDKNK--TVFESTSKR 220
P I F+ FE QRRTFA+YGYALDPS +V +K IG+ +KN+ TVFE T ++
Sbjct: 201 PAHINDFM--FEQQRRTFATYGYALDPSLDNHQVSTKYIGSVEEAEKNQGLTVFE-TGQK 257
Query: 221 PLDKRKRNRNDCPEDIEGFLGPWGGYTDEEKVSRPNXXXXXXXXXXXXXXXXXXXXXXXX 280
++KRK+ + + +I+GFLGPW Y DE+ V++P+
Sbjct: 258 KIEKRKKFKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEK 317
Query: 281 PLEEKTILHIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISA 340
P EEKTILH+K+ DYQGRS+LH P DVG NLRS PP++C+LPK Q+H W GHTKG+SA
Sbjct: 318 PGEEKTILHVKEMYDYQGRSYLHIPQDVGVNLRSTVPPEKCYLPKKQIHVWSGHTKGVSA 377
Query: 341 IRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRW 400
+R FP S HLLLSCSMDC++KLWEVY +RRC+RT+ GH +AVRDICFN GT F+SA
Sbjct: 378 VRLFPLSGHLLLSCSMDCKIKLWEVYGDRRCLRTFIGHSKAVRDICFNTAGTQFLSA--- 434
Query: 401 FPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN--NTGTNFISAGY-D 457
+ D +KLW+ + +C+ + + +R+ + FN N AG D
Sbjct: 435 -----------AYDRYLKLWDT-ETGQCI-SRFTNRKVPYCVKFNPDEDKQNLFVAGMSD 481
Query: 458 RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL-------------DIPVDMKYIA 504
+ + WD SGE + + A DE+++ + DIPVD KYIA
Sbjct: 482 KKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIA 541
Query: 505 DPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564
+P+MHSMPAVT SPN KWLACQSMDN+ILIF A NRF+LN+KK F+GHMVAGYAC +DFS
Sbjct: 542 EPSMHSMPAVTLSPNGKWLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFS 601
Query: 565 PDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619
PDMSY+ISGD +GK IWDWKTTKL+ ++KAHD VCI +WHPHE SKV+T GWD
Sbjct: 602 PDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWD 656
|
|
| UNIPROTKB|F1MBS9 CDC40 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
Identities = 241/475 (50%), Positives = 310/475 (65%)
Query: 166 PEDIEGFLGPFENQRRTFASYGYALDPS---SEVESKVIGASMSGDKNK--TVFESTSKR 220
P I F+ FE QRRTFA+YGYALDPS +V +K IG+ +KN+ TVFE T ++
Sbjct: 117 PAHINDFM--FEQQRRTFATYGYALDPSLDNHQVSTKYIGSVEEAEKNQGLTVFE-TGQK 173
Query: 221 PLDKRKRNRNDCPEDIEGFLGPWGGYTDEEKVSRPNXXXXXXXXXXXXXXXXXXXXXXXX 280
++KRK+ + + +I+GFLGPW Y DE+ V++P+
Sbjct: 174 KIEKRKKFKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEK 233
Query: 281 PLEEKTILHIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISA 340
P EEKTILH+K+ DYQGRS+LH P DVG NLRS PP++C+LPK Q+H W GHTKG+SA
Sbjct: 234 PGEEKTILHVKEMYDYQGRSYLHIPQDVGVNLRSTVPPEKCYLPKKQIHVWSGHTKGVSA 293
Query: 341 IRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRW 400
+R FP S HLLLSCSMDC++KLWEVY +RRC+RT+ GH +AVRDICFN GT F+SA
Sbjct: 294 VRLFPLSGHLLLSCSMDCKIKLWEVYGDRRCLRTFIGHSKAVRDICFNTAGTQFLSA--- 350
Query: 401 FPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN--NTGTNFISAGY-D 457
+ D +KLW+ + +C+ + + +R+ + FN N AG D
Sbjct: 351 -----------AYDRYLKLWDT-ETGQCI-SRFTNRKVPYCVKFNPDEDKQNLFVAGMSD 397
Query: 458 RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL-------------DIPVDMKYIA 504
+ + WD SGE + + A DE+++ + DIPVD KYIA
Sbjct: 398 KKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIA 457
Query: 505 DPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564
+P+MHSMPAVT SPN KWLACQSMDN+ILIF A NRF+LN+KK F+GHMVAGYAC +DFS
Sbjct: 458 EPSMHSMPAVTLSPNGKWLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFS 517
Query: 565 PDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619
PDMSY+ISGD +GK IWDWKTTKL+ ++KAHD VCI +WHPHE SKV+T GWD
Sbjct: 518 PDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWD 572
|
|
| UNIPROTKB|O60508 CDC40 "Pre-mRNA-processing factor 17" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1213 (432.1 bits), Expect = 2.1e-123, P = 2.1e-123
Identities = 242/475 (50%), Positives = 309/475 (65%)
Query: 166 PEDIEGFLGPFENQRRTFASYGYALDPS---SEVESKVIGASMSGDKNK--TVFESTSKR 220
P I F+ FE QRRTFA+YGYALDPS +V +K IG+ +KN+ TVFE T ++
Sbjct: 117 PAHINDFM--FEQQRRTFATYGYALDPSLDNHQVSAKYIGSVEEAEKNQGLTVFE-TGQK 173
Query: 221 PLDKRKRNRNDCPEDIEGFLGPWGGYTDEEKVSRPNXXXXXXXXXXXXXXXXXXXXXXXX 280
+KRK+ + + +I+GFLGPW Y DE+ V++P+
Sbjct: 174 KTEKRKKFKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEK 233
Query: 281 PLEEKTILHIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISA 340
P EEKTILH+K+ DYQGRS+LH P DVG NLRS PP++C+LPK Q+H W GHTKG+SA
Sbjct: 234 PGEEKTILHVKEMYDYQGRSYLHIPQDVGVNLRSTMPPEKCYLPKKQIHVWSGHTKGVSA 293
Query: 341 IRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRW 400
+R FP S HLLLSCSMDC++KLWEVY ERRC+RT+ GH +AVRDICFN GT F+SA
Sbjct: 294 VRLFPLSGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSA--- 350
Query: 401 FPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN--NTGTNFISAGY-D 457
+ D +KLW+ + +C+ + + +R+ + FN N AG D
Sbjct: 351 -----------AYDRYLKLWDT-ETGQCI-SRFTNRKVPYCVKFNPDEDKQNLFVAGMSD 397
Query: 458 RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL-------------DIPVDMKYIA 504
+ + WD SGE + + A DE+++ + DIPVD KYIA
Sbjct: 398 KKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIA 457
Query: 505 DPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564
+P+MHSMPAVT SPN KWLACQSMDN+ILIF A NRF+LN+KK F+GHMVAGYAC +DFS
Sbjct: 458 EPSMHSMPAVTLSPNGKWLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFS 517
Query: 565 PDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619
PDMSY+ISGD +GK IWDWKTTKL+ ++KAHD VCI +WHPHE SKV+T GWD
Sbjct: 518 PDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWD 572
|
|
| MGI|MGI:1918963 Cdc40 "cell division cycle 40" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1212 (431.7 bits), Expect = 2.7e-123, P = 2.7e-123
Identities = 241/475 (50%), Positives = 309/475 (65%)
Query: 166 PEDIEGFLGPFENQRRTFASYGYALDPS---SEVESKVIGASMSGDKNK--TVFESTSKR 220
P I F+ FE QRRTFA+YGYALDPS +V +K IG+ +KN+ TVFE T ++
Sbjct: 117 PAHINDFM--FEQQRRTFATYGYALDPSLDNHQVSAKYIGSVEEAEKNQGLTVFE-TGQK 173
Query: 221 PLDKRKRNRNDCPEDIEGFLGPWGGYTDEEKVSRPNXXXXXXXXXXXXXXXXXXXXXXXX 280
+KRK+ + + +I+GFLGPW Y DE+ V++P+
Sbjct: 174 KTEKRKKFKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEK 233
Query: 281 PLEEKTILHIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISA 340
P EEKTILH+K+ DYQGRS+LH P DVG NLRS PP++C+LPK Q+H W GHTKG+SA
Sbjct: 234 PGEEKTILHVKEMYDYQGRSYLHIPQDVGVNLRSSVPPEKCYLPKKQIHVWSGHTKGVSA 293
Query: 341 IRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRW 400
+R FP S HLLLSCSMDC++KLWEVY +RRC+RT+ GH +AVRDICFN GT F+SA
Sbjct: 294 VRLFPLSGHLLLSCSMDCKIKLWEVYGDRRCLRTFIGHSKAVRDICFNTAGTQFLSA--- 350
Query: 401 FPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN--NTGTNFISAGY-D 457
+ D +KLW+ + +C+ + + +R+ + FN N AG D
Sbjct: 351 -----------AYDRYLKLWDT-ETGQCI-SRFTNRKVPYCVKFNPDEDKQNLFVAGMSD 397
Query: 458 RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL-------------DIPVDMKYIA 504
+ + WD SGE + + A DE+++ + DIPVD KYIA
Sbjct: 398 KKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIA 457
Query: 505 DPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564
+P+MHSMPAVT SPN KWLACQSMDN+ILIF A NRF+LN+KK F+GHMVAGYAC +DFS
Sbjct: 458 EPSMHSMPAVTLSPNGKWLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFS 517
Query: 565 PDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619
PDMSY+ISGD +GK IWDWKTTKL+ ++KAHD VCI +WHPHE SKV+T GWD
Sbjct: 518 PDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWD 572
|
|
| UNIPROTKB|F1LMQ0 Cdc40 "Protein Cdc40" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
Identities = 229/456 (50%), Positives = 297/456 (65%)
Query: 185 SYGYALDPS---SEVESKVIGASMSGDKNK--TVFESTSKRPLDKRKRNRNDCPEDIEGF 239
++GYALDPS +V +K IG+ +KN+ TVFE T ++ +KRK+ + + +I+GF
Sbjct: 2 AFGYALDPSLDNHQVSAKYIGSVEDAEKNQGLTVFE-TGQKKTEKRKKFKENDASNIDGF 60
Query: 240 LGPWGGYTDEEKVSRPNXXXXXXXXXXXXXXXXXXXXXXXXPLEEKTILHIKDPTDYQGR 299
LGPW Y DE+ V++P+ P EEKTILH+K+ DYQGR
Sbjct: 61 LGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEKPGEEKTILHVKEMYDYQGR 120
Query: 300 SFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCR 359
S+LH P DVG NLRS PP++C+LPK Q+H W GHTKG+SA+R FP S HLLLSCSMDC+
Sbjct: 121 SYLHIPQDVGVNLRSSVPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLSGHLLLSCSMDCK 180
Query: 360 VKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKL 419
+KLWEVY +RRC+RT+ GH +AVRDICFN GT F+SA + D +KL
Sbjct: 181 IKLWEVYGDRRCLRTFIGHSKAVRDICFNTAGTQFLSA--------------AYDRYLKL 226
Query: 420 WEVYKEHRCVRTYYGHRQAVRDICFN--NTGTNFISAGY-DRYLKLWDTESGECISRFTS 476
W+ + +C+ + + +R+ + FN N AG D+ + WD SGE + +
Sbjct: 227 WDT-ETGQCI-SRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDR 284
Query: 477 RKVAYCVKFHPDEDKQHL-------------DIPVDMKYIADPTMHSMPAVTSSPNNKWL 523
A DE+++ + DIPVD KYIA+P+MHSMPAVT SPN KWL
Sbjct: 285 HLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWL 344
Query: 524 ACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWD 583
ACQSMDN+ILIF A NRF+LN+KK F+GHMVAGYAC +DFSPDMSY+ISGD +GK IWD
Sbjct: 345 ACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWD 404
Query: 584 WKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619
WKTTKL+ ++KAHD VCI +WHPHE SKV+T GWD
Sbjct: 405 WKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWD 440
|
|
| RGD|1307063 Cdc40 "cell division cycle 40" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1158 (412.7 bits), Expect = 1.4e-117, P = 1.4e-117
Identities = 229/454 (50%), Positives = 295/454 (64%)
Query: 187 GYALDPS---SEVESKVIGASMSGDKNK--TVFESTSKRPLDKRKRNRNDCPEDIEGFLG 241
GYALDPS +V +K IG+ +KN+ TVFE T ++ +KRK+ + + +I+GFLG
Sbjct: 1 GYALDPSLDNHQVSAKYIGSVEDAEKNQGLTVFE-TGQKKTEKRKKFKENDASNIDGFLG 59
Query: 242 PWGGYTDEEKVSRPNXXXXXXXXXXXXXXXXXXXXXXXXPLEEKTILHIKDPTDYQGRSF 301
PW Y DE+ V++P+ P EEKTILH+K+ DYQGRS+
Sbjct: 60 PWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEKPGEEKTILHVKEMYDYQGRSY 119
Query: 302 LHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVK 361
LH P DVG NLRS PP++C+LPK Q+H W GHTKG+SA+R FP S HLLLSCSMDC++K
Sbjct: 120 LHIPQDVGVNLRSSVPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLSGHLLLSCSMDCKIK 179
Query: 362 LWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWE 421
LWEVY +RRC+RT+ GH +AVRDICFN GT F+SA + D +KLW+
Sbjct: 180 LWEVYGDRRCLRTFIGHSKAVRDICFNTAGTQFLSA--------------AYDRYLKLWD 225
Query: 422 VYKEHRCVRTYYGHRQAVRDICFN--NTGTNFISAGY-DRYLKLWDTESGECISRFTSRK 478
+ +C+ + + +R+ + FN N AG D+ + WD SGE + +
Sbjct: 226 T-ETGQCI-SRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHL 283
Query: 479 VAYCVKFHPDEDKQHL-------------DIPVDMKYIADPTMHSMPAVTSSPNNKWLAC 525
A DE+++ + DIPVD KYIA+P+MHSMPAVT SPN KWLAC
Sbjct: 284 GAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLAC 343
Query: 526 QSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWK 585
QSMDN+ILIF A NRF+LN+KK F+GHMVAGYAC +DFSPDMSY+ISGD +GK IWDWK
Sbjct: 344 QSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWK 403
Query: 586 TTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619
TTKL+ ++KAHD VCI +WHPHE SKV+T GWD
Sbjct: 404 TTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWD 437
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9DC48 | PRP17_MOUSE | No assigned EC number | 0.5336 | 0.4278 | 0.7530 | yes | N/A |
| O60508 | PRP17_HUMAN | No assigned EC number | 0.5357 | 0.4278 | 0.7530 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1019 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-47 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-27 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-27 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-26 | |
| pfam04727 | 170 | pfam04727, ELMO_CED12, ELMO/CED-12 family | 1e-25 | |
| pfam04727 | 170 | pfam04727, ELMO_CED12, ELMO/CED-12 family | 3e-25 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-24 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-23 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-12 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 5e-08 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 7e-06 | |
| cd13359 | 126 | cd13359, PH_ELMO1_CED-12, Engulfment and cell moti | 9e-06 | |
| pfam04727 | 170 | pfam04727, ELMO_CED12, ELMO/CED-12 family | 1e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-05 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 2e-04 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 4e-47
Identities = 83/313 (26%), Positives = 128/313 (40%), Gaps = 38/313 (12%)
Query: 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICF 387
T +GHT G++ + + P LL + S D +K+W+ + +RT GH VRD+
Sbjct: 2 RRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWD-LETGELLRTLKGHTGPVRDV-- 57
Query: 388 NNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT 447
L S S D ++LW++ CVRT GH V + F+
Sbjct: 58 -----------AASADG-TYLASGSSDKTIRLWDLETG-ECVRTLTGHTSYVSSVAFSPD 104
Query: 448 GTNFISAGYDRYLKLWDTESGECISRFTS-RKVAYCVKFHPDE--------DKQHL--DI 496
G S+ D+ +K+WD E+G+C++ V F PD D D+
Sbjct: 105 GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164
Query: 497 PVDMKYIADPTMHSMP--AVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMV 554
K +A T H+ +V SP+ + L S D I ++ L T GH
Sbjct: 165 -RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL---GTLRGH-- 218
Query: 555 AGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVV 614
S+ FSPD L SG DG +WD +T + + H S W P + ++
Sbjct: 219 ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLA 277
Query: 615 TAGWDAATAKVQD 627
+ D T ++ D
Sbjct: 278 SGSAD-GTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 2e-27
Identities = 65/262 (24%), Positives = 99/262 (37%), Gaps = 60/262 (22%)
Query: 371 CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVR 430
RT GH V + F+ G LL + S D +K+W++ +R
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDG--------------KLLATGSGDGTIKVWDLETG-ELLR 45
Query: 431 TYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTS-RKVAYCVKFHPDE 489
T GH VRD+ + GT S D+ ++LWD E+GEC+ T V F PD
Sbjct: 46 TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD- 104
Query: 490 DKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTF 549
+ L+ S D I ++ + K T
Sbjct: 105 ------------------------------GRILSSSSRDKTIKVWD-VETGKC--LTTL 131
Query: 550 EGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609
GH + S+ FSPD +++ S DG +WD +T K H G S + P +
Sbjct: 132 RGHT--DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-D 188
Query: 610 PSKVVTAG-------WDAATAK 624
K++++ WD +T K
Sbjct: 189 GEKLLSSSSDGTIKLWDLSTGK 210
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 8e-27
Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 18/168 (10%)
Query: 322 FLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQA 381
+ T GHT ++++ F + S S D +KLW++ + +CV T GH
Sbjct: 122 VETGKCLTTLRGHTDWVNSVA-FSPDGTFVASSSQDGTIKLWDL-RTGKCVATLTGHTGE 179
Query: 382 VRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRD 441
V + F+ G + S S D +KLW++ +C+ T GH V
Sbjct: 180 VNSVAFSPDGEKLL--------------SSSSDGTIKLWDLSTG-KCLGTLRGHENGVNS 224
Query: 442 ICFNNTGTNFISAGYDRYLKLWDTESGECISRFTS-RKVAYCVKFHPD 488
+ F+ G S D +++WD +GEC+ + + + PD
Sbjct: 225 VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD 272
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 4e-26
Identities = 66/280 (23%), Positives = 112/280 (40%), Gaps = 34/280 (12%)
Query: 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICF 387
+ T GHT +S++ + P L+ S S D ++LW++ + T GH
Sbjct: 191 LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS-------- 242
Query: 388 NNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT 447
S + F LL S S D ++LW++ +RT GH +V + F+
Sbjct: 243 -------DSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD 295
Query: 448 GTNFISAGYDRYLKLWDTESGECISRFT---SRKVAYCVKFHPDEDK-----------QH 493
G S D ++LWD E+G+ +S T + F PD +
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355
Query: 494 LDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHM 553
D+ ++ +V+ SP+ + ++ S D + ++ + + +GH
Sbjct: 356 WDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLST---GSLLRNLDGH- 411
Query: 554 VAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKW 593
SLDFSPD L SG +D +WD KT+ +
Sbjct: 412 -TSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
|
Length = 466 |
| >gnl|CDD|218231 pfam04727, ELMO_CED12, ELMO/CED-12 family | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 1e-25
Identities = 40/89 (44%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 925 TEDFVKVVLENSCRADEHECPFGRTSVELVKHLCEILRIGDAPSEQGVNYH-PMFFTHDH 983
++F K++LE+S R EHE PF S+ + L E+LRIG E NY P+FF
Sbjct: 79 PDEFQKLLLESSHRPAEHEYPFAVASINVTSMLYELLRIGKLDQEDYKNYGFPLFFPTLL 138
Query: 984 PFEEFYCICIVLLNKTWKEMRATTEDFVK 1012
FEE YC L ++ WKEMRAT DF K
Sbjct: 139 AFEELYCALFHLFDRFWKEMRATIMDFNK 167
|
This family represents a conserved domain which is found in a number of eukaryotic proteins including CED-12, ELMO I and ELMO II. ELMO1 is a component of signalling pathways that regulate phagocytosis and cell migration and is the mammalian orthologue of the C. elegans gene, ced-12. CED-12 is required for the engulfment of dying cells and cell migration. In mammalian cells, ELMO1 interacts with Dock180 as part of the CrkII/Dock180/Rac pathway responsible for phagocytosis and cell migration. ELMO1 is ubiquitously expressed, although its expression is highest in the spleen, an organ rich in immune cells. ELMO1 has a PH domain and a polyproline sequence motif at its C terminus which are not present in this alignment. Length = 170 |
| >gnl|CDD|218231 pfam04727, ELMO_CED12, ELMO/CED-12 family | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 3e-25
Identities = 39/85 (45%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 848 QVVLENSCRADEHECPFGRTSVELVKHLCEILRIGDAPSEQGVNYH-PMFFTHDHPFEEF 906
+++LE+S R EHE PF S+ + L E+LRIG E NY P+FF FEE
Sbjct: 84 KLLLESSHRPAEHEYPFAVASINVTSMLYELLRIGKLDQEDYKNYGFPLFFPTLLAFEEL 143
Query: 907 YCICIVLLNKTWKEMRATTEDFVKV 931
YC L ++ WKEMRAT DF KV
Sbjct: 144 YCALFHLFDRFWKEMRATIMDFNKV 168
|
This family represents a conserved domain which is found in a number of eukaryotic proteins including CED-12, ELMO I and ELMO II. ELMO1 is a component of signalling pathways that regulate phagocytosis and cell migration and is the mammalian orthologue of the C. elegans gene, ced-12. CED-12 is required for the engulfment of dying cells and cell migration. In mammalian cells, ELMO1 interacts with Dock180 as part of the CrkII/Dock180/Rac pathway responsible for phagocytosis and cell migration. ELMO1 is ubiquitously expressed, although its expression is highest in the spleen, an organ rich in immune cells. ELMO1 has a PH domain and a polyproline sequence motif at its C terminus which are not present in this alignment. Length = 170 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 107 bits (267), Expect = 2e-24
Identities = 77/322 (23%), Positives = 126/322 (39%), Gaps = 53/322 (16%)
Query: 323 LPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG-HRQA 381
LP GH I++I F LLLS S D +KLW++ + +++ G H +
Sbjct: 53 LPDLSSLLLRGHEDSITSIA-FSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSS 111
Query: 382 VRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRD 441
V + ++ N I LL S S+D VKLW++ + +RT GH ++V
Sbjct: 112 VSKLALSSPDGNSI-----------LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTS 160
Query: 442 ICFNNTGTNFISAG-YDRYLKLWDTESGECISRFT-SRKVAYCVKFHPDEDKQHLDIPVD 499
+ F+ G S D +KLWD +G+ +S + F PD
Sbjct: 161 LAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPD----------- 209
Query: 500 MKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYAC 559
+A S D I ++ L + T GH + +
Sbjct: 210 -------------------GGLLIASGSSDGTIRLWDLSTGKLL--RSTLSGHSDSVVSS 248
Query: 560 SLDFSPDMSYLISGDADGKCYIWDWKTT-KLFKKWKAHDGVCISTLWHPHEPSKVVTAGW 618
FSPD S L SG +DG +WD +++ L + H +S + P K++ +G
Sbjct: 249 ---FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD--GKLLASGS 303
Query: 619 DAATAKVQDANIVKIAVEMEKQ 640
T ++ D K+ + +
Sbjct: 304 SDGTVRLWDLETGKLLSSLTLK 325
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-23
Identities = 48/202 (23%), Positives = 69/202 (34%), Gaps = 37/202 (18%)
Query: 428 CVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHP 487
RT GH V + F+ G + D +K+WD E+GE +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL------------- 47
Query: 488 DEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKK 547
K H + V +S + +LA S D I ++ L + R
Sbjct: 48 ---KGHT--------------GPVRDVAASADGTYLASGSSDKTIRLWD-LETGECVR-- 87
Query: 548 TFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHP 607
T GH Y S+ FSPD L S D +WD +T K + H S + P
Sbjct: 88 TLTGH--TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP 145
Query: 608 HEPSKVVTAGWDAATAKVQDAN 629
V + T K+ D
Sbjct: 146 --DGTFVASSSQDGTIKLWDLR 165
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 5e-12
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRD 384
+ T GH G++++ + P +LL S S D +++W++ + CV+T GH +V
Sbjct: 209 GKCLGTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDL-RTGECVQTLSGHTNSVTS 266
Query: 385 ICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWE 421
+ ++ G L S S D +++W+
Sbjct: 267 LAWSPDGK--------------RLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 5e-08
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 427 RCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWD 464
++T GH V + F+ G S D +KLWD
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-07
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 427 RCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWD 464
+ +RT GH V + F+ G S D +++WD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-06
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 324 PKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWE 364
+ T +GHT ++++ + P L S S D +KLW+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDG-KYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-06
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLW 363
+ T +GHT ++++ + P +LL S S D V++W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDG-NLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-06
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 542 KLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWD 583
KT +GH G S+ FSPD YL SG DG +WD
Sbjct: 1 SGELLKTLKGH--TGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|241513 cd13359, PH_ELMO1_CED-12, Engulfment and cell motility protein 1 pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 9e-06
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 824 DLIQQQRLGYLVEGTRFTKYSSRGQ 848
+LI+QQRL +LVEGT F KY++R +
Sbjct: 1 ELIKQQRLNFLVEGTLFPKYNARRR 25
|
DOCK2 (Dedicator of cytokinesis 2), a hematopoietic cell-specific, atypical GEF, controls lymphocyte migration through Rac activation. A DOCK2-ELMO1 complex s necessary for DOCK2-mediated Rac signaling. DOCK2 contains a SH3 domain at its N-terminus, followed by a lipid binding DHR1 domain, and a Rac-binding DHR2 domain at its C-terminus. ELMO1, a mammalian homolog of C. elegans CED-12, contains the N-terminal RhoG-binding region, the ELMO domain, the PH domain, and the C-terminal sequence with three PxxP motifs. The C-terminal region of ELMO1, including the Pro-rich sequence, binds the SH3-containing region of DOCK2 forming a intermolecular five-helix bundle along with the PH domain of ELMO1. Autoinhibition of ELMO1 and DOCK2 is accomplished by the interactions of the EID and EAD domains and SH3 and DHR2 domains, respectively. The interaction of DOCK2 and ELMO1 mutually relieve their autoinhibition and results in the activation of Rac1. The PH domain of ELMO1 does not bind phosphoinositides due to the absence of key binding residues. It more closely resembles the FERM domain rather than other PH domains. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 126 |
| >gnl|CDD|218231 pfam04727, ELMO_CED12, ELMO/CED-12 family | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 730 EFYCICIVLLNKTWKEMRATTEDFVKVFS 758
E YC L ++ WKEMRAT DF KV
Sbjct: 142 ELYCALFHLFDRFWKEMRATIMDFNKVLE 170
|
This family represents a conserved domain which is found in a number of eukaryotic proteins including CED-12, ELMO I and ELMO II. ELMO1 is a component of signalling pathways that regulate phagocytosis and cell migration and is the mammalian orthologue of the C. elegans gene, ced-12. CED-12 is required for the engulfment of dying cells and cell migration. In mammalian cells, ELMO1 interacts with Dock180 as part of the CrkII/Dock180/Rac pathway responsible for phagocytosis and cell migration. ELMO1 is ubiquitously expressed, although its expression is highest in the spleen, an organ rich in immune cells. ELMO1 has a PH domain and a polyproline sequence motif at its C terminus which are not present in this alignment. Length = 170 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 547 KTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWD 583
+T +GH G S+ FSPD + L SG DG +WD
Sbjct: 5 RTLKGH--TGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 14/53 (26%)
Query: 369 RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWE 421
++T GH V + F+ G L S S D +KLW+
Sbjct: 2 GELLKTLKGHTGPVTSVAFSPDG--------------KYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 2e-05
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 14/52 (26%)
Query: 369 RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLW 420
+ +RT GH V + F+ G +LL S S D V++W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDG--------------NLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 2e-04
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 332 EGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRD-ICFNNT 390
+GHT I +++ P + +L S S D +++WE+ V+ ++D C
Sbjct: 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-------EIKDPQCILKG 123
Query: 391 GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR 427
IS I W P + +++ S D V +W++ E R
Sbjct: 124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR 160
|
Length = 568 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1019 | |||
| KOG0282|consensus | 503 | 100.0 | ||
| KOG2999|consensus | 713 | 100.0 | ||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG2998|consensus | 302 | 100.0 | ||
| PF04727 | 170 | ELMO_CED12: ELMO/CED-12 family; InterPro: IPR00681 | 100.0 | |
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0286|consensus | 343 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0319|consensus | 775 | 100.0 | ||
| KOG0318|consensus | 603 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG0286|consensus | 343 | 100.0 | ||
| KOG0263|consensus | 707 | 100.0 | ||
| KOG0295|consensus | 406 | 99.98 | ||
| KOG0265|consensus | 338 | 99.98 | ||
| KOG0284|consensus | 464 | 99.97 | ||
| KOG0293|consensus | 519 | 99.97 | ||
| KOG0263|consensus | 707 | 99.97 | ||
| KOG0273|consensus | 524 | 99.97 | ||
| KOG0284|consensus | 464 | 99.97 | ||
| KOG0266|consensus | 456 | 99.97 | ||
| KOG0291|consensus | 893 | 99.97 | ||
| KOG0645|consensus | 312 | 99.97 | ||
| KOG0295|consensus | 406 | 99.97 | ||
| KOG0281|consensus | 499 | 99.97 | ||
| KOG0285|consensus | 460 | 99.97 | ||
| KOG0273|consensus | 524 | 99.97 | ||
| KOG0318|consensus | 603 | 99.97 | ||
| KOG0313|consensus | 423 | 99.97 | ||
| KOG0292|consensus | 1202 | 99.97 | ||
| KOG0306|consensus | 888 | 99.97 | ||
| KOG0291|consensus | 893 | 99.97 | ||
| KOG0306|consensus | 888 | 99.97 | ||
| KOG0296|consensus | 399 | 99.97 | ||
| KOG0285|consensus | 460 | 99.96 | ||
| KOG0316|consensus | 307 | 99.96 | ||
| KOG0315|consensus | 311 | 99.96 | ||
| KOG0319|consensus | 775 | 99.96 | ||
| KOG0266|consensus | 456 | 99.96 | ||
| KOG0282|consensus | 503 | 99.96 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.96 | |
| KOG0645|consensus | 312 | 99.96 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG0276|consensus | 794 | 99.96 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.95 | |
| KOG0281|consensus | 499 | 99.95 | ||
| KOG0275|consensus | 508 | 99.95 | ||
| KOG0772|consensus | 641 | 99.95 | ||
| KOG0288|consensus | 459 | 99.95 | ||
| KOG0278|consensus | 334 | 99.95 | ||
| KOG0276|consensus | 794 | 99.94 | ||
| KOG0277|consensus | 311 | 99.94 | ||
| KOG1446|consensus | 311 | 99.94 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG0308|consensus | 735 | 99.94 | ||
| KOG0292|consensus | 1202 | 99.94 | ||
| KOG0296|consensus | 399 | 99.94 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.94 | |
| KOG0647|consensus | 347 | 99.94 | ||
| KOG0973|consensus | 942 | 99.94 | ||
| KOG0274|consensus | 537 | 99.94 | ||
| KOG0265|consensus | 338 | 99.94 | ||
| KOG0772|consensus | 641 | 99.93 | ||
| KOG0640|consensus | 430 | 99.93 | ||
| KOG0283|consensus | 712 | 99.93 | ||
| KOG0313|consensus | 423 | 99.93 | ||
| KOG0293|consensus | 519 | 99.93 | ||
| KOG0643|consensus | 327 | 99.93 | ||
| KOG1407|consensus | 313 | 99.92 | ||
| KOG0973|consensus | 942 | 99.92 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.92 | |
| KOG0275|consensus | 508 | 99.92 | ||
| KOG0283|consensus | 712 | 99.92 | ||
| KOG0643|consensus | 327 | 99.92 | ||
| KOG0268|consensus | 433 | 99.92 | ||
| KOG0641|consensus | 350 | 99.92 | ||
| KOG0310|consensus | 487 | 99.92 | ||
| KOG0640|consensus | 430 | 99.91 | ||
| KOG0299|consensus | 479 | 99.91 | ||
| KOG0294|consensus | 362 | 99.91 | ||
| KOG0264|consensus | 422 | 99.91 | ||
| KOG0305|consensus | 484 | 99.91 | ||
| KOG0316|consensus | 307 | 99.91 | ||
| KOG0301|consensus | 745 | 99.91 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.9 | |
| KOG0308|consensus | 735 | 99.9 | ||
| KOG0278|consensus | 334 | 99.9 | ||
| KOG0277|consensus | 311 | 99.9 | ||
| KOG1063|consensus | 764 | 99.9 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.9 | |
| KOG0321|consensus | 720 | 99.9 | ||
| KOG0274|consensus | 537 | 99.89 | ||
| KOG0300|consensus | 481 | 99.89 | ||
| KOG0289|consensus | 506 | 99.89 | ||
| KOG0288|consensus | 459 | 99.89 | ||
| KOG1332|consensus | 299 | 99.89 | ||
| KOG1408|consensus | 1080 | 99.89 | ||
| KOG0289|consensus | 506 | 99.89 | ||
| KOG1332|consensus | 299 | 99.89 | ||
| KOG1539|consensus | 910 | 99.89 | ||
| KOG2096|consensus | 420 | 99.88 | ||
| KOG0310|consensus | 487 | 99.88 | ||
| KOG1407|consensus | 313 | 99.88 | ||
| KOG0646|consensus | 476 | 99.88 | ||
| KOG0650|consensus | 733 | 99.88 | ||
| KOG1036|consensus | 323 | 99.88 | ||
| KOG0305|consensus | 484 | 99.87 | ||
| KOG0269|consensus | 839 | 99.87 | ||
| KOG0300|consensus | 481 | 99.87 | ||
| KOG0301|consensus | 745 | 99.87 | ||
| KOG0294|consensus | 362 | 99.87 | ||
| KOG0641|consensus | 350 | 99.86 | ||
| KOG0267|consensus | 825 | 99.86 | ||
| KOG0268|consensus | 433 | 99.86 | ||
| KOG0264|consensus | 422 | 99.86 | ||
| KOG4283|consensus | 397 | 99.86 | ||
| KOG2445|consensus | 361 | 99.86 | ||
| KOG0639|consensus | 705 | 99.85 | ||
| KOG4283|consensus | 397 | 99.85 | ||
| KOG0269|consensus | 839 | 99.85 | ||
| KOG1274|consensus | 933 | 99.85 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.84 | |
| KOG0302|consensus | 440 | 99.84 | ||
| KOG1446|consensus | 311 | 99.83 | ||
| KOG0299|consensus | 479 | 99.83 | ||
| KOG2055|consensus | 514 | 99.83 | ||
| KOG1539|consensus | 910 | 99.83 | ||
| KOG2048|consensus | 691 | 99.83 | ||
| KOG0267|consensus | 825 | 99.83 | ||
| KOG2106|consensus | 626 | 99.83 | ||
| KOG2096|consensus | 420 | 99.82 | ||
| KOG1445|consensus | 1012 | 99.81 | ||
| KOG0639|consensus | 705 | 99.81 | ||
| KOG1034|consensus | 385 | 99.8 | ||
| KOG1274|consensus | 933 | 99.8 | ||
| KOG0302|consensus | 440 | 99.8 | ||
| KOG1273|consensus | 405 | 99.8 | ||
| KOG2055|consensus | 514 | 99.8 | ||
| KOG2048|consensus | 691 | 99.8 | ||
| KOG1273|consensus | 405 | 99.79 | ||
| KOG2106|consensus | 626 | 99.79 | ||
| KOG1036|consensus | 323 | 99.78 | ||
| KOG4328|consensus | 498 | 99.78 | ||
| KOG0307|consensus | 1049 | 99.78 | ||
| KOG0270|consensus | 463 | 99.77 | ||
| KOG0646|consensus | 476 | 99.77 | ||
| KOG1063|consensus | 764 | 99.77 | ||
| KOG0642|consensus | 577 | 99.76 | ||
| KOG0647|consensus | 347 | 99.76 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.76 | |
| KOG0270|consensus | 463 | 99.76 | ||
| KOG2445|consensus | 361 | 99.76 | ||
| KOG1009|consensus | 434 | 99.76 | ||
| KOG4378|consensus | 673 | 99.75 | ||
| KOG0303|consensus | 472 | 99.74 | ||
| KOG1408|consensus | 1080 | 99.74 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.73 | |
| KOG0650|consensus | 733 | 99.72 | ||
| KOG1007|consensus | 370 | 99.71 | ||
| KOG2919|consensus | 406 | 99.71 | ||
| KOG4328|consensus | 498 | 99.71 | ||
| KOG0322|consensus | 323 | 99.7 | ||
| KOG0321|consensus | 720 | 99.7 | ||
| KOG0649|consensus | 325 | 99.7 | ||
| KOG1034|consensus | 385 | 99.69 | ||
| KOG0642|consensus | 577 | 99.69 | ||
| KOG1334|consensus | 559 | 99.68 | ||
| KOG4378|consensus | 673 | 99.68 | ||
| KOG0307|consensus | 1049 | 99.68 | ||
| KOG1188|consensus | 376 | 99.67 | ||
| KOG0644|consensus | 1113 | 99.67 | ||
| KOG1009|consensus | 434 | 99.66 | ||
| KOG1538|consensus | 1081 | 99.66 | ||
| KOG1517|consensus | 1387 | 99.66 | ||
| KOG1963|consensus | 792 | 99.66 | ||
| KOG4227|consensus | 609 | 99.66 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.64 | |
| KOG1538|consensus | 1081 | 99.64 | ||
| KOG1517|consensus | 1387 | 99.64 | ||
| KOG0290|consensus | 364 | 99.63 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.62 | |
| KOG2999|consensus | 713 | 99.61 | ||
| KOG2919|consensus | 406 | 99.61 | ||
| KOG0303|consensus | 472 | 99.6 | ||
| KOG0290|consensus | 364 | 99.59 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.58 | |
| KOG1007|consensus | 370 | 99.57 | ||
| KOG1240|consensus | 1431 | 99.57 | ||
| KOG1310|consensus | 758 | 99.56 | ||
| KOG1523|consensus | 361 | 99.54 | ||
| KOG1587|consensus | 555 | 99.54 | ||
| KOG0771|consensus | 398 | 99.54 | ||
| KOG1445|consensus | 1012 | 99.54 | ||
| KOG1524|consensus | 737 | 99.54 | ||
| KOG0649|consensus | 325 | 99.53 | ||
| KOG1524|consensus | 737 | 99.5 | ||
| KOG1310|consensus | 758 | 99.5 | ||
| KOG4497|consensus | 447 | 99.49 | ||
| KOG1188|consensus | 376 | 99.49 | ||
| KOG1240|consensus | 1431 | 99.45 | ||
| KOG1963|consensus | 792 | 99.45 | ||
| KOG0322|consensus | 323 | 99.44 | ||
| KOG0644|consensus | 1113 | 99.42 | ||
| KOG0771|consensus | 398 | 99.42 | ||
| KOG1587|consensus | 555 | 99.41 | ||
| KOG2321|consensus | 703 | 99.41 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.4 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 99.4 | |
| KOG4497|consensus | 447 | 99.39 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.37 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.36 | |
| KOG2139|consensus | 445 | 99.36 | ||
| KOG4227|consensus | 609 | 99.35 | ||
| KOG1523|consensus | 361 | 99.32 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.32 | |
| KOG2110|consensus | 391 | 99.32 | ||
| KOG2394|consensus | 636 | 99.3 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.29 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.29 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.28 | |
| KOG1272|consensus | 545 | 99.28 | ||
| KOG2111|consensus | 346 | 99.27 | ||
| KOG3881|consensus | 412 | 99.26 | ||
| KOG2394|consensus | 636 | 99.26 | ||
| KOG2110|consensus | 391 | 99.25 | ||
| KOG2111|consensus | 346 | 99.25 | ||
| KOG0974|consensus | 967 | 99.24 | ||
| KOG1354|consensus | 433 | 99.22 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.21 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.21 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.2 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.15 | |
| KOG1334|consensus | 559 | 99.15 | ||
| KOG3881|consensus | 412 | 99.14 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.12 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.12 | |
| KOG2139|consensus | 445 | 99.1 | ||
| KOG1272|consensus | 545 | 99.09 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.07 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.06 | |
| KOG1064|consensus | 2439 | 99.06 | ||
| KOG2315|consensus | 566 | 99.06 | ||
| KOG1354|consensus | 433 | 99.05 | ||
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.05 | |
| KOG1409|consensus | 404 | 99.04 | ||
| KOG2315|consensus | 566 | 99.04 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.03 | |
| KOG2041|consensus | 1189 | 99.02 | ||
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.0 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.0 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.99 | |
| KOG4547|consensus | 541 | 98.98 | ||
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.98 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.97 | |
| KOG0974|consensus | 967 | 98.96 | ||
| KOG4547|consensus | 541 | 98.96 | ||
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.94 | |
| KOG4190|consensus | 1034 | 98.92 | ||
| KOG2321|consensus | 703 | 98.9 | ||
| KOG2314|consensus | 698 | 98.86 | ||
| KOG0309|consensus | 1081 | 98.83 | ||
| KOG0309|consensus | 1081 | 98.83 | ||
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.83 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.81 | |
| KOG4190|consensus | 1034 | 98.81 | ||
| KOG0280|consensus | 339 | 98.77 | ||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.76 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.74 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.72 | |
| KOG0280|consensus | 339 | 98.7 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.7 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.69 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.67 | |
| KOG1064|consensus | 2439 | 98.66 | ||
| KOG4532|consensus | 344 | 98.64 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.61 | |
| KOG3914|consensus | 390 | 98.6 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.6 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.57 | |
| KOG1409|consensus | 404 | 98.56 | ||
| KOG1832|consensus | 1516 | 98.53 | ||
| KOG2041|consensus | 1189 | 98.52 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.52 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.51 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.5 | |
| KOG1275|consensus | 1118 | 98.49 | ||
| KOG4532|consensus | 344 | 98.48 | ||
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.47 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.44 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.42 | |
| KOG2695|consensus | 425 | 98.38 | ||
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.37 | |
| KOG1912|consensus | 1062 | 98.35 | ||
| KOG2314|consensus | 698 | 98.33 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.3 | |
| KOG2066|consensus | 846 | 98.27 | ||
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.26 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.25 | |
| KOG0882|consensus | 558 | 98.24 | ||
| KOG4714|consensus | 319 | 98.23 | ||
| KOG3914|consensus | 390 | 98.23 | ||
| KOG1912|consensus | 1062 | 98.19 | ||
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.19 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.15 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.14 | |
| KOG4714|consensus | 319 | 98.07 | ||
| KOG1832|consensus | 1516 | 98.01 | ||
| KOG2695|consensus | 425 | 98.0 | ||
| KOG2114|consensus | 933 | 97.98 | ||
| KOG1645|consensus | 463 | 97.97 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.94 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.93 | |
| KOG2114|consensus | 933 | 97.92 | ||
| KOG0882|consensus | 558 | 97.89 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.85 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.85 | |
| KOG2066|consensus | 846 | 97.84 | ||
| KOG1920|consensus | 1265 | 97.82 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.77 | |
| KOG1008|consensus | 783 | 97.74 | ||
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.72 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.66 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.64 | |
| KOG1008|consensus | 783 | 97.63 | ||
| KOG3617|consensus | 1416 | 97.62 | ||
| KOG1920|consensus | 1265 | 97.53 | ||
| KOG1275|consensus | 1118 | 97.5 | ||
| KOG3617|consensus | 1416 | 97.45 | ||
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.43 | |
| KOG1645|consensus | 463 | 97.35 | ||
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.33 | |
| KOG4649|consensus | 354 | 97.31 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.24 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.19 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.19 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.15 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.06 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.05 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.04 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.02 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.97 | |
| KOG3621|consensus | 726 | 96.88 | ||
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.88 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.86 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.85 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.73 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.67 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.67 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.58 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.58 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.56 | |
| KOG4649|consensus | 354 | 96.55 | ||
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.52 | |
| KOG3621|consensus | 726 | 96.51 | ||
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.48 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.35 | |
| KOG2395|consensus | 644 | 96.23 | ||
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.22 | |
| KOG4640|consensus | 665 | 96.18 | ||
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.11 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.09 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.07 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.05 | |
| KOG1897|consensus | 1096 | 96.03 | ||
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 95.99 | |
| KOG4640|consensus | 665 | 95.98 | ||
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 95.87 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 95.72 | |
| KOG2079|consensus | 1206 | 95.55 | ||
| KOG2395|consensus | 644 | 95.38 | ||
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 95.34 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.14 | |
| KOG2079|consensus | 1206 | 95.06 | ||
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.04 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 94.81 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 94.8 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 94.78 | |
| KOG2444|consensus | 238 | 94.76 | ||
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 94.71 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 94.61 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 94.57 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 94.45 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 94.4 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 94.39 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.32 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 93.92 | |
| KOG4441|consensus | 571 | 93.38 | ||
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.26 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 93.23 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 93.16 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 93.09 | |
| KOG4499|consensus | 310 | 93.0 | ||
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 92.48 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 92.37 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 92.31 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 91.98 | |
| KOG2444|consensus | 238 | 91.84 | ||
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 91.71 | |
| KOG1916|consensus | 1283 | 91.38 | ||
| PHA02713 | 557 | hypothetical protein; Provisional | 90.97 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 90.68 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 90.21 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 90.06 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 89.89 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 89.73 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 89.32 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 89.3 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 89.09 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 88.99 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 88.61 | |
| KOG2280|consensus | 829 | 88.31 | ||
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 88.05 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 87.33 | |
| KOG1897|consensus | 1096 | 87.05 | ||
| PHA02713 | 557 | hypothetical protein; Provisional | 86.92 | |
| KOG4499|consensus | 310 | 86.47 | ||
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 85.93 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 85.71 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 85.43 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 84.95 | |
| PRK10115 | 686 | protease 2; Provisional | 84.82 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 84.22 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 83.99 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 83.84 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 83.71 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 83.51 | |
| KOG2247|consensus | 615 | 83.51 | ||
| KOG4460|consensus | 741 | 83.34 | ||
| KOG4441|consensus | 571 | 83.1 | ||
| PHA03098 | 534 | kelch-like protein; Provisional | 82.75 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 82.45 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 81.34 |
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-71 Score=594.92 Aligned_cols=457 Identities=45% Similarity=0.811 Sum_probs=407.9
Q ss_pred cCCcccccc-cccccccCCCCceeeeCcccccccCCCCCCCCCCcchhhhccccccccceeeeccChhhhhhhcccceec
Q psy307 41 ATPAVIPKV-MESSNLTDVNTKEITKNLRYEELYAPEYGPVNPFLTQQQRADKNTLSGFVEQAHINSFQFENQRRTFASY 119 (1019)
Q Consensus 41 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (1019)
.+|+|..+. +.+...+||+++|+.|||+|++||+|+.||+|||++.++
T Consensus 29 ~~~aV~~~~~~~~v~~~dp~~ke~~~np~~~~l~~p~~Gp~n~f~s~q~------------------------------- 77 (503)
T KOG0282|consen 29 IVTAVESKSAIRQVAIVDPKTKEIKSNPKFDQLFKPESGPVNHFKSEQQ------------------------------- 77 (503)
T ss_pred cchhhccccccccccccCCcchhhccCCchhhhcccccCCCCcchhhhh-------------------------------
Confidence 344577776 778899999999999999999999999999999999887
Q ss_pred ccccCCCCcccccccccCcCCCCCcccccccCCCcccccccCCCCCCCcccccCCccccccccccccccccCCCcccccc
Q psy307 120 GYALDPSSEVESKVIGASTSGDKNKTVFESTSKRPLDKRKRNRNDCPEDIEGFLGPFENQRRTFASYGYALDPSSEVESK 199 (1019)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~q~~~~~~~g~~~~p~~~~~~~ 199 (1019)
..+||+.+.
T Consensus 78 -----------~~~vg~~~~------------------------------------------------------------ 86 (503)
T KOG0282|consen 78 -----------TRFVGDVKK------------------------------------------------------------ 86 (503)
T ss_pred -----------hhhccchhh------------------------------------------------------------
Confidence 113344333
Q ss_pred eecccccCCCCcceeccCCCCcccccccccCCCCCccCCCcCCCCccccccccCCCChhhHHHHHHHHHHHhhccccc--
Q psy307 200 VIGASMSGDKNKTVFESTSKRPLDKRKRNRNDCPEDIEGFLGPWGGYTDEEKVSRPNEAQAAELEEYLAKKQKKGKQS-- 277 (1019)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~k~kr~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 277 (1019)
++.+.|.++|+.+. +..++|||++++|+++++|+.|||++|.+|..+.++++++..++|++..++++++++.
T Consensus 87 -----ae~~~g~t~fe~~~-k~~~~Rk~~~~dd~~~idg~~gpWsr~~dE~~vak~~~~~~~~~de~~~k~~e~~~~~e~ 160 (503)
T KOG0282|consen 87 -----AEAEKGVSLFESKK-KGGEQRKRVGNDDSADIDGYSGPWSRYVDEKTVAKPTPEEQKQMDEIVKKRQEKKKEKED 160 (503)
T ss_pred -----hhcccCceeecccc-cccchhhhccCCChhhccCCCCCcccccccccccCCCcchhhhhhhhhhhhhhhcccccc
Confidence 34456777877755 5677888899999999999999999999999999999999999999888777764433
Q ss_pred cCCcccccceecccCCCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCC
Q psy307 278 EEKPLEEKTILHIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMD 357 (1019)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~D 357 (1019)
++..-++.+++|+++.++|+||.+++.|.|..|+++ +.+|++|++.+++|.||+.+|+++.|+|..+++|++|+.|
T Consensus 161 ~~~~~ee~s~~h~k~~~dyq~r~~l~~P~dv~vnlR----~~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD 236 (503)
T KOG0282|consen 161 SEHMAEESSTLHGKSLFDYQGRSYLQKPKDVGVNLR----EERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMD 236 (503)
T ss_pred ccccccccccccccchhhccccccccCCcccCCccc----cceeeccHhheeeccCCccccchhhhccceeeEEEecCCC
Confidence 344567889999999999999999999999999998 6789999999999999999999999999889999999999
Q ss_pred CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccc
Q psy307 358 CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQ 437 (1019)
Q Consensus 358 g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~ 437 (1019)
+.|+||+++..++|++++.||..+|.+++|+++| ..++|+|.|+.|++||+ .+++++..+. -..
T Consensus 237 ~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g--------------~~fLS~sfD~~lKlwDt-ETG~~~~~f~-~~~ 300 (503)
T KOG0282|consen 237 GLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG--------------TSFLSASFDRFLKLWDT-ETGQVLSRFH-LDK 300 (503)
T ss_pred ceEEEEEEecCcceehhhhcchhhhhhhhccccC--------------Ceeeeeecceeeeeecc-ccceEEEEEe-cCC
Confidence 9999999999999999999999999999999999 68999999999999999 6666666653 234
Q ss_pred cEeEEEEecCC-CEEEEEEcCCeEEEEECCCCceEEEEecC-CceEEEEEecCCCeeee------------ccCCCceee
Q psy307 438 AVRDICFNNTG-TNFISAGYDRYLKLWDTESGECISRFTSR-KVAYCVKFHPDEDKQHL------------DIPVDMKYI 503 (1019)
Q Consensus 438 ~V~sl~fspdg-~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~-~~v~~v~~~p~~~~~~~------------~~~~~~~~i 503 (1019)
.+.|+.|+|++ +.|++|+.|+.|+.||+++++.++.+..+ ..+..+.|-+++...+. .+++.++.+
T Consensus 301 ~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i 380 (503)
T KOG0282|consen 301 VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNI 380 (503)
T ss_pred CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhh
Confidence 57889999999 78999999999999999999988777655 66778888877765443 677888899
Q ss_pred eCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy307 504 ADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWD 583 (1019)
Q Consensus 504 ~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWD 583 (1019)
..+.++.++++..+|+++++++.+.|+.|.+|.+...++++..+.+.||..+|+.+.+.|||||++|++|+.||.+.+||
T Consensus 381 ~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 381 ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred cchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 584 WKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 584 l~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+++.+++..+++|+++|+.+.|||..++.|||||+||.|++|
T Consensus 461 wkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 461 WKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred chhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEec
Confidence 999999999999999999999999999999999999999887
|
|
| >KOG2999|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-67 Score=572.02 Aligned_cols=381 Identities=35% Similarity=0.522 Sum_probs=349.9
Q ss_pred ccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCC
Q psy307 627 DANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSAS 706 (1019)
Q Consensus 627 d~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd 706 (1019)
+.++.|.+++..++..+++..++..++...+...|.+|+.+.++.|++++.+..+ .|+|+++++.++||.|+.++.||+
T Consensus 4 p~hiVK~Ave~~~~~~~li~~dq~~~l~~~I~~~~~~~s~~~~e~~~~~~~~~~~-~yite~nrn~i~ng~iL~l~~sp~ 82 (713)
T KOG2999|consen 4 PSHIVKGAVEIDKEFAQLIPSDQLHPLASTINELCQGWSMNLHEDYALQLMADKN-RYITEKNRNEIKNGFILQLCASPS 82 (713)
T ss_pred chhheEEEEEecchHHHhccCCCCCchHHHHHHHcccccCCchHHHHHHhcCCcc-ceeehhhhhcccCCcEEEeecCch
Confidence 4567889999999999999999999999999999999999999999999999888 799999999999999999999999
Q ss_pred ccHHHHHhhcCCCch-----hhHH--------HHHHhhhee-------eeeeecc--chhhhhh-chh------------
Q psy307 707 KTADDILSKLSDKNA-----SLEE--------KTAAEFYCI-------CIVLLNK--TWKEMRA-TTE------------ 751 (1019)
Q Consensus 707 ~~a~~Ilt~~~d~~i-----~lw~--------~~~~e~~~~-------~i~~~~~--~~~~~~a-~l~------------ 751 (1019)
..+++|..-+++|+. ++.+ +||+|||.. .+++.+. +.+++++ +|+
T Consensus 83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 83 HYAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 999999999998876 4443 999999993 3555443 3777777 665
Q ss_pred ------hhH-HHHHHHHhhhhhhhhcCchhhH---HHHhcc--------ccccHHHHHHHhhccccchhhhhcccccHHH
Q psy307 752 ------DFV-KVFSVVREQITRALSSQPASLD---KFRANI--------SRLTYSEITNLWQQERTSREEWESHAKPIVE 813 (1019)
Q Consensus 752 ------~fv-kv~s~v~~~~~~~~~~~~~~L~---~~~~~~--------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 813 (1019)
+|| ++++||+.+..++.+.+ ++|. ++|..+ +++++++|+.|+|. +++.++++ ||++
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~-~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~---~n~~i~~~--aial 236 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLL-AALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQV---SNQRIQTC--AIAL 236 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchH-HHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHh---cchHHHHH--HHHH
Confidence 899 99999988877776666 5555 788887 78999999999999 99999999 9999
Q ss_pred HHhhc-------hHHHHHHHHHHhhcceec----CceecccCccchhhhhhhccccCCcCCCCCCcHHHHHHHHHHHHcC
Q psy307 814 LKELI-------TPEIVDLIQQQRLGYLVE----GTRFTKYSSRGQVVLENSCRADEHECPFGRTSVELVKHLCEILRIG 882 (1019)
Q Consensus 814 ln~l~-------~~ei~~~i~~~~l~~li~----~~~~~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 882 (1019)
||+++ |.++++.+.+.+++..+. ++++.++||++|.++++++ +.||.+++|+.++++|+.+++|++++
T Consensus 237 ~nal~~~a~~~~R~~~~~~l~~~~~R~ai~~~~~~~~~~~~lyvlq~L~~gll-e~Rm~~~md~~~q~qr~~i~~lr~ia 315 (713)
T KOG2999|consen 237 LNALFRKAPDDKRFEMAKSLEQKQFRNAIHSNVIRTERPIQLYVLQVLTLGLL-EVRMRTKMDPQDQVQRELISELRRIA 315 (713)
T ss_pred HHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHhhh-HHhhhcccchhhHHHHHHHHHHHhcC
Confidence 99999 679999999999999776 6889999999999999999 99999999999999999999999999
Q ss_pred CCCC----------c--c---CcccccCcccC-CCchhhhh--hhHHHhhhhhHHHHhhChHHHHHHHHHhcCCcccccc
Q psy307 883 DAPS----------E--Q---GVNYHPMFFTH-DHPFEEFY--CICIVLLNKTWKEMRATTEDFVKVVLENSCRADEHEC 944 (1019)
Q Consensus 883 ~~~~----------~--~---~~~w~~lgf~~-~~p~~df~--~~g~~~l~~l~~~~~~~~~~f~~~~~e~~~~~~~~~~ 944 (1019)
|... + + .+.||+|||.+ .||++||. ..|.|+|+||+||||+||+.|.|||+||++|.|+|||
T Consensus 316 f~~~~~~~~~g~~~e~rk~l~~~~ykklgf~n~~npa~df~etppG~LAldnMvyFA~~~~~~y~riVlENSsRedkhec 395 (713)
T KOG2999|consen 316 FDDESEPSRRGGGAEVRKILDIESYKKLGFENRINPAQDFGETPPGRLALDNMVYFARNSPQDYRRIVLENSSREDKHEC 395 (713)
T ss_pred cccccccccCCcchhhhhhhhHHHHHhhcccccCChHHhcccCCchHHHHHHHHHHHHhCHHHHHHHHHhcccccccCcC
Confidence 9951 1 1 89999999999 99999999 6789999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHHHhcCCCCCCCCcceEeeeccCCCCchhHHHHHHHHHHHHHHhccccccchhhhhc
Q psy307 945 PFGRTSVELVKHLCEILRIGDAPSEQGVNYHPMFFTHDHPFEEFYCICIVLLNKTWKEMRATTEDFVKCKS 1015 (1019)
Q Consensus 945 p~a~~~~~~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~W~~~~a~~~df~kv~~ 1015 (1019)
||+|.||++|+||||+|+||++++|+..+|+||||+||.+|+||||+|+|+|+|||||||||.|||+|||+
T Consensus 396 pfgr~sieltk~lcEilrVge~p~E~~~df~pmfFthd~~Fee~FciciqLlnkTWKEMrAt~edf~KVmq 466 (713)
T KOG2999|consen 396 PFGRMSIELTKILCELLRVGEPPDELDRDFIPMFFTHDTPFEELFCICVQLLNRTWKEMRATAEDFEKVMQ 466 (713)
T ss_pred CcCccHHHHHHHHHHHHhcCCCchhhcCccceeeecCCCcHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=351.21 Aligned_cols=309 Identities=21% Similarity=0.369 Sum_probs=264.6
Q ss_pred CCCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE
Q psy307 292 DPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC 371 (1019)
Q Consensus 292 ~~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~ 371 (1019)
..|.++|+.+++|+-|.++++|+... ..+.++.+||...|.|++|+|| |..||||+.||+|++||...+...
T Consensus 121 ~~fsp~g~~l~tGsGD~TvR~WD~~T-------eTp~~t~KgH~~WVlcvawsPD-gk~iASG~~dg~I~lwdpktg~~~ 192 (480)
T KOG0271|consen 121 VQFSPTGSRLVTGSGDTTVRLWDLDT-------ETPLFTCKGHKNWVLCVAWSPD-GKKIASGSKDGSIRLWDPKTGQQI 192 (480)
T ss_pred EEecCCCceEEecCCCceEEeeccCC-------CCcceeecCCccEEEEEEECCC-cchhhccccCCeEEEecCCCCCcc
Confidence 45788999999999999999998773 3568899999999999999996 899999999999999999888888
Q ss_pred EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEE
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNF 451 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l 451 (1019)
.+.+.||.+.|++++|.|-.. .|.+ .+|++++.||.|+|||+ ..+.++..+.+|+.+|+|+.|--+| ++
T Consensus 193 g~~l~gH~K~It~Lawep~hl--------~p~~-r~las~skDg~vrIWd~-~~~~~~~~lsgHT~~VTCvrwGG~g-li 261 (480)
T KOG0271|consen 193 GRALRGHKKWITALAWEPLHL--------VPPC-RRLASSSKDGSVRIWDT-KLGTCVRTLSGHTASVTCVRWGGEG-LI 261 (480)
T ss_pred cccccCcccceeEEeeccccc--------CCCc-cceecccCCCCEEEEEc-cCceEEEEeccCccceEEEEEcCCc-eE
Confidence 899999999999999988542 2222 58999999999999999 8889999999999999999997554 89
Q ss_pred EEEEcCCeEEEEECCCCceEEEEecC-CceEEEEEec-----------CCCe-------------------------eee
Q psy307 452 ISAGYDRYLKLWDTESGECISRFTSR-KVAYCVKFHP-----------DEDK-------------------------QHL 494 (1019)
Q Consensus 452 ~S~s~Dg~I~lWDl~t~~~i~~~~~~-~~v~~v~~~p-----------~~~~-------------------------~~~ 494 (1019)
+|||.|++|++|+...|.+...+.++ ..++.++.+. .+.. .+.
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS 341 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS 341 (480)
T ss_pred EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence 99999999999999999998888766 4566666552 2221 000
Q ss_pred ccCCCceee------------eCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEE
Q psy307 495 DIPVDMKYI------------ADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562 (1019)
Q Consensus 495 ~~~~~~~~i------------~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~ 562 (1019)
.......++ ...|..-|..+.||||+++||++|.|..|++||.+++ +.+.+|.||. +.|..++
T Consensus 342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---k~lasfRGHv--~~VYqva 416 (480)
T KOG0271|consen 342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---KFLASFRGHV--AAVYQVA 416 (480)
T ss_pred ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc---chhhhhhhcc--ceeEEEE
Confidence 111111111 2235556889999999999999999999999999998 4568899998 7799999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 563 fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
||.|.++|++|+.|.++++||+++.++...+.+|...|.++.|+||| ..+++||.|..+++|
T Consensus 417 wsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG-~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 417 WSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDG-QRVASGGKDKVLRLW 478 (480)
T ss_pred eccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCC-ceeecCCCceEEEee
Confidence 99999999999999999999999999999999999999999999999 699999999888776
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=334.93 Aligned_cols=326 Identities=19% Similarity=0.347 Sum_probs=270.8
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
.+-..+.||.++|.|++|+| ++..|+||+.|.++|+||+ ....+..+.++|...|.|++|+|||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~-~TeTp~~t~KgH~~WVlcvawsPDg-------------- 169 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDL-DTETPLFTCKGHKNWVLCVAWSPDG-------------- 169 (480)
T ss_pred eeccccCCCCCcEEEEEecC-CCceEEecCCCceEEeecc-CCCCcceeecCCccEEEEEEECCCc--------------
Confidence 55678999999999999999 5899999999999999999 5567889999999999999999999
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec-----CCCEEEEEEcCCeEEEEECCCCceEEEEecC-Cc
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN-----TGTNFISAGYDRYLKLWDTESGECISRFTSR-KV 479 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp-----dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~-~~ 479 (1019)
+.|++|+.||+|++||..++......+.+|...|++++|.| ..++|+++|.||+|+|||+..+.++..+..+ ..
T Consensus 170 k~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~ 249 (480)
T KOG0271|consen 170 KKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS 249 (480)
T ss_pred chhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc
Confidence 79999999999999999888899999999999999999976 5678999999999999999999998887765 34
Q ss_pred eEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceE
Q psy307 480 AYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYAC 559 (1019)
Q Consensus 480 v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~ 559 (1019)
+.|+.| -.+ .+|++||.|++|++|+..++ .....+.||. .+|+
T Consensus 250 VTCvrw-------------------------------GG~-gliySgS~DrtIkvw~a~dG---~~~r~lkGHa--hwvN 292 (480)
T KOG0271|consen 250 VTCVRW-------------------------------GGE-GLIYSGSQDRTIKVWRALDG---KLCRELKGHA--HWVN 292 (480)
T ss_pred eEEEEE-------------------------------cCC-ceEEecCCCceEEEEEccch---hHHHhhcccc--hhee
Confidence 455554 333 48999999999999999887 4567888987 6688
Q ss_pred EEEEc-----------CCCC-------------------------EEEEEeCCCeEEEEeCCC-CceeeeeeccCCCEEE
Q psy307 560 SLDFS-----------PDMS-------------------------YLISGDADGKCYIWDWKT-TKLFKKWKAHDGVCIS 602 (1019)
Q Consensus 560 ~v~fs-----------pdg~-------------------------~Lasgs~DG~I~IWDl~t-~~~l~~l~~h~~~V~s 602 (1019)
.++.+ |.|+ .|++|+.|+++.+|+-.. .+++..+.+|...|+.
T Consensus 293 ~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~ 372 (480)
T KOG0271|consen 293 HLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNH 372 (480)
T ss_pred eeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheee
Confidence 87766 3344 499999999999999654 5688899999999999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCc
Q psy307 603 TLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNK 682 (1019)
Q Consensus 603 l~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~ 682 (1019)
+.|+||+ .+|+++|.|..|+ .|+...++.+..+.+++..+++.... .....++..+-+...
T Consensus 373 V~fSPd~-r~IASaSFDkSVk-LW~g~tGk~lasfRGHv~~VYqvaws-----------------aDsRLlVS~SkDsTL 433 (480)
T KOG0271|consen 373 VSFSPDG-RYIASASFDKSVK-LWDGRTGKFLASFRGHVAAVYQVAWS-----------------ADSRLLVSGSKDSTL 433 (480)
T ss_pred EEECCCc-cEEEEeeccccee-eeeCCCcchhhhhhhccceeEEEEec-----------------cCccEEEEcCCCceE
Confidence 9999998 7999999999995 57888899998888888877763211 111223333334444
Q ss_pred eEEeccccccc-----cCCceEEEEecCCccHHHHHhhcCCCchhhHH
Q psy307 683 NYITEKNRNEI-----KNGSVLRLAFSASKTADDILSKLSDKNASLEE 725 (1019)
Q Consensus 683 ~~it~~~~~~I-----~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~ 725 (1019)
+++..+.+... |...|.++.||||+ +.+++|..|+-++||.
T Consensus 434 Kvw~V~tkKl~~DLpGh~DEVf~vDwspDG--~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 434 KVWDVRTKKLKQDLPGHADEVFAVDWSPDG--QRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEeeeeeecccCCCCCceEEEEEecCCC--ceeecCCCceEEEeec
Confidence 45554444332 68889999999999 8999999999999995
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=340.43 Aligned_cols=274 Identities=24% Similarity=0.382 Sum_probs=249.9
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCC-CCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPK-SAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd-~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
++.++..+++++.+|.+++|+... ...+++|.||+..|.++.|+|. ++..++||+.||+|++|++ .+..++
T Consensus 183 fS~ds~~laT~swsG~~kvW~~~~-------~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~-~~e~~l 254 (459)
T KOG0272|consen 183 FSRDSKHLATGSWSGLVKVWSVPQ-------CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL-SQETPL 254 (459)
T ss_pred eecCCCeEEEeecCCceeEeecCC-------cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc-CCCcch
Confidence 677899999999999999998763 2568999999999999999998 4779999999999999999 555788
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
..+.||...|..++|+|+| ++|+|+|.|.+-++||+ .++..+....||+..|.+|+|.+||..++
T Consensus 255 ~~l~gH~~RVs~VafHPsG--------------~~L~TasfD~tWRlWD~-~tk~ElL~QEGHs~~v~~iaf~~DGSL~~ 319 (459)
T KOG0272|consen 255 QDLEGHLARVSRVAFHPSG--------------KFLGTASFDSTWRLWDL-ETKSELLLQEGHSKGVFSIAFQPDGSLAA 319 (459)
T ss_pred hhhhcchhhheeeeecCCC--------------ceeeecccccchhhccc-ccchhhHhhcccccccceeEecCCCceee
Confidence 9999999999999999999 79999999999999999 66677777899999999999999999999
Q ss_pred EEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeE
Q psy307 453 SAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKI 532 (1019)
Q Consensus 453 S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I 532 (1019)
|||.|..-+|||+++|+++..+..+ ...|.+++|+|+|..||+||.|+++
T Consensus 320 tGGlD~~~RvWDlRtgr~im~L~gH------------------------------~k~I~~V~fsPNGy~lATgs~Dnt~ 369 (459)
T KOG0272|consen 320 TGGLDSLGRVWDLRTGRCIMFLAGH------------------------------IKEILSVAFSPNGYHLATGSSDNTC 369 (459)
T ss_pred ccCccchhheeecccCcEEEEeccc------------------------------ccceeeEeECCCceEEeecCCCCcE
Confidence 9999999999999999998877654 3556677888899999999999999
Q ss_pred EEEEccCcccccceeEEeccccccceEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCc
Q psy307 533 LIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP-DMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPS 611 (1019)
Q Consensus 533 ~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp-dg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~ 611 (1019)
+|||++... ...++.+|. ..|+.|.|+| .|.+|+|++.|++++||.-.++.+++++.||.+.|.++..++++ .
T Consensus 370 kVWDLR~r~---~ly~ipAH~--nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~-~ 443 (459)
T KOG0272|consen 370 KVWDLRMRS---ELYTIPAHS--NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDS-Q 443 (459)
T ss_pred EEeeecccc---cceeccccc--chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCC-c
Confidence 999999773 357788887 6799999999 78899999999999999999999999999999999999999998 7
Q ss_pred EEEEEeCCCcEEEEe
Q psy307 612 KVVTAGWDAATAKVQ 626 (1019)
Q Consensus 612 ~l~s~s~Dg~I~iww 626 (1019)
.++|+|.|.+|++|.
T Consensus 444 ~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 444 AIATSSFDRTIKLWR 458 (459)
T ss_pred eEEEeccCceeeecc
Confidence 999999999998873
|
|
| >KOG2998|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=334.31 Aligned_cols=165 Identities=16% Similarity=0.249 Sum_probs=149.2
Q ss_pred CccchhhhhhhccccCCcCCCCCCcHHHHHHHHHHHHcCCCCCc----cCcccccCcccCCCchhhhhhhHHHhhhhhHH
Q psy307 844 SSRGQVVLENSCRADEHECPFGRTSVELVKHLCEILRIGDAPSE----QGVNYHPMFFTHDHPFEEFYCICIVLLNKTWK 919 (1019)
Q Consensus 844 l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~----~~~~w~~lgf~~~~p~~df~~~g~~~l~~l~~ 919 (1019)
+...|..+++.+ +.++.+|||.++|+|.++|+.||++.+|+.. .+++|++||||++||+|||||||||||+||+|
T Consensus 103 ~~~~~~~l~~~~-e~~~~~~yDs~n~~H~e~L~~lwk~~~p~~~l~~lvs~qW~emGfQG~dPsTDFRG~GfL~LeNLly 181 (302)
T KOG2998|consen 103 LIPGYRELLQRL-EELRQEPYDSDNPDHEELLLDLWKLLYPDKELPGLVSKQWKEMGFQGADPSTDFRGMGFLGLENLLY 181 (302)
T ss_pred cccCcHHHHHHH-HHHHhccCCCCChhHHHHHHHHHHHhCCCCccchhHHHHHHHhccCCCCCCcccccchHHHHHHHHH
Confidence 445677788888 7777899999999999999999999999754 39999999999999999999999999999999
Q ss_pred HHhhChHHHHHHHHHhcCCcccccccccchhhhHHHHHHHHHhcCC---CCCCCCcceEeeeccCCCCchhHHHHHHHHH
Q psy307 920 EMRATTEDFVKVVLENSCRADEHECPFGRTSVELVKHLCEILRIGD---APSEQGVNYHPMFFTHDHPFEEFYCICIVLL 996 (1019)
Q Consensus 920 ~~~~~~~~f~~~~~e~~~~~~~~~~p~a~~~~~~t~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~ 996 (1019)
||++||++|++||++|-+.+ |+||||++|||||+||+++|+.+. +.++.+..| +...+|+.|||++|+.|
T Consensus 182 Fa~~~~~~aq~lL~~s~~~r--~eYpfAVvgINIT~m~~qmL~~eal~~~~~~~~~~~-----~~~~~F~~lYc~af~~~ 254 (302)
T KOG2998|consen 182 FARTYPTSAQRLLLKSRHPR--WEYPFAVVGINITFMAIQMLDLEALKKHFNNIVKVF-----ETEPAFDLLYCYAFLEF 254 (302)
T ss_pred HHHhhhHHHHHHHHhcCCCc--cCCceEEEeecHHHHHHHHHHhhhcccccccccccc-----ccHHHHHHHHHHHHHHH
Confidence 99999999999999988765 999999999999999999999854 444444444 77889999999999999
Q ss_pred HHHHHhccccccchhhhhcC
Q psy307 997 NKTWKEMRATTEDFVKCKSS 1016 (1019)
Q Consensus 997 ~~~W~~~~a~~~df~kv~~~ 1016 (1019)
+++|++|+||+||||.|+++
T Consensus 255 d~~Wl~~~~simefn~Vlk~ 274 (302)
T KOG2998|consen 255 DKQWLEQRATIMEFNTVLKS 274 (302)
T ss_pred HHHHHHhhccHHHHHHHHHH
Confidence 99999999999999999986
|
|
| >PF04727 ELMO_CED12: ELMO/CED-12 family; InterPro: IPR006816 This entry represents the ELMO (EnguLfment and Cell MOtility) domain, which is found in a number of eukaryotic proteins involved in the cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility, including CED-12, ELMO-1 and ELMO-2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=324.96 Aligned_cols=164 Identities=27% Similarity=0.429 Sum_probs=154.9
Q ss_pred hhhhccccCCcCCCCCCcHHHHHHHHHHHHcCCCC----CccCcccccCcccCCCchhhhhhhHHHhhhhhHHHHhhChH
Q psy307 851 LENSCRADEHECPFGRTSVELVKHLCEILRIGDAP----SEQGVNYHPMFFTHDHPFEEFYCICIVLLNKTWKEMRATTE 926 (1019)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~----~~~~~~w~~lgf~~~~p~~df~~~g~~~l~~l~~~~~~~~~ 926 (1019)
+++.| +.++.+|||+++++|+++|++||.+++++ .+.+++|++||||++||++|||++|+|||.||+||+++||+
T Consensus 2 ~l~~l-~~~~~~~~d~~~~~h~~~L~~Lw~~~~~~~~~~~~~~~~W~~lGFQ~~dP~tDFR~~G~LgL~~L~yf~~~~~~ 80 (170)
T PF04727_consen 2 TLNLL-RALAKTPFDPENPEHEELLQELWNALFPDEPPFSRISEHWKELGFQGEDPATDFRGMGLLGLDCLLYFAENYPD 80 (170)
T ss_pred hHHHH-HHHHcCCCCCCCHHHHHHHHHHHHHhCCCCccCCcCccHHHHhCCCCCCcHHHHhhhhHHHHHHHHHHHHHChH
Confidence 56777 77888899999999999999999999994 34489999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcccccccccchhhhHHHHHHHHHhcCCCCCCCCcceEee-eccCCCCchhHHHHHHHHHHHHHHhccc
Q psy307 927 DFVKVVLENSCRADEHECPFGRTSVELVKHLCEILRIGDAPSEQGVNYHPM-FFTHDHPFEEFYCICIVLLNKTWKEMRA 1005 (1019)
Q Consensus 927 ~f~~~~~e~~~~~~~~~~p~a~~~~~~t~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~l~~~~~~~~~~~W~~~~a 1005 (1019)
.|++++.+|..++++++||||++||+||.|||++|++++...+....+.++ ++..+.+|++|||+||++|+++|++|+|
T Consensus 81 ~~~~~l~~~~~~~~~~~~Pfa~~~invt~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~elf~~~f~~f~~~W~~~~a 160 (170)
T PF04727_consen 81 EFRRILREQSSRSDENWYPFAVASINVTSLLCELLKLGALDSEFYKRINFLSFFSSLEAFEELFCACFQLFDRTWKEMNA 160 (170)
T ss_pred HHHHHHHHccCcccccccHHHHHHHHHHHHHHHHHhhcccCHHHhhcccccccCccHHHHHHHHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999999888888887777 8888999999999999999999999999
Q ss_pred cccchhhhhc
Q psy307 1006 TTEDFVKCKS 1015 (1019)
Q Consensus 1006 ~~~df~kv~~ 1015 (1019)
++|||+||||
T Consensus 161 t~~dF~~V~~ 170 (170)
T PF04727_consen 161 TIMDFNKVLK 170 (170)
T ss_pred CHHHHHhhcC
Confidence 9999999996
|
ELMO-1 and ELMO-2 are components of signalling pathways that regulate phagocytosis and cell migration and are mammalian orthologues of the Caenorhabditis elegans gene, ced-12 that is required for the engulfment of dying cells and cell migration. ELMO-1/2 act in association with DOCK1 and CRK. ELMO-1/2 interact with the SH3-domain of DOCK1 via an SH3-binding site to enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. ELMO-1/2 could be part of a complex with DOCK1 and Rac1 that could be required to activate Rac Rho small GTPases. Regulatory GTPases in the Ras superfamily employ a cycle of alternating GTP binding and hydrolysis, controlled by guanine nucleotide exchange factors and GTPase-activating proteins (GAPs), as essential features of their actions in cells. Within the Ras superfamily, the Arf family is composed of 30 members, including 22 Arf-like (Arl) proteins. The ELMO domain has been proposed to be a GAP domain for ARL2 and other members of the Arf family [].; GO: 0006909 phagocytosis, 0005856 cytoskeleton |
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=324.78 Aligned_cols=287 Identities=22% Similarity=0.326 Sum_probs=250.4
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEE
Q psy307 332 EGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSC 411 (1019)
Q Consensus 332 ~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sg 411 (1019)
-|-+.+|..+.|+++ +..|+|||.+|.++||+. .....+.++.||...|.++.|+|.. +...++||
T Consensus 172 ~gd~rPis~~~fS~d-s~~laT~swsG~~kvW~~-~~~~~~~~l~gH~~~v~~~~fhP~~------------~~~~lat~ 237 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRD-SKHLATGSWSGLVKVWSV-PQCNLLQTLRGHTSRVGAAVFHPVD------------SDLNLATA 237 (459)
T ss_pred ccCCCcceeeEeecC-CCeEEEeecCCceeEeec-CCcceeEEEeccccceeeEEEccCC------------Cccceeee
Confidence 366789999999996 899999999999999999 4458899999999999999999863 12689999
Q ss_pred eCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCe
Q psy307 412 SMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDK 491 (1019)
Q Consensus 412 s~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~ 491 (1019)
+.||++++|++ .+..++..+.+|...|..++|+|+|++|+|+|+|.+-++||++++..+...+
T Consensus 238 s~Dgtvklw~~-~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE---------------- 300 (459)
T KOG0272|consen 238 SADGTVKLWKL-SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE---------------- 300 (459)
T ss_pred ccCCceeeecc-CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhc----------------
Confidence 99999999999 6668999999999999999999999999999999999999999987654433
Q ss_pred eeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEE
Q psy307 492 QHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLI 571 (1019)
Q Consensus 492 ~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~La 571 (1019)
.|...|.+++|+|||.++++|+.|..-+|||++++ .++..+.||. ..|.+|+|+|+|..||
T Consensus 301 --------------GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg---r~im~L~gH~--k~I~~V~fsPNGy~lA 361 (459)
T KOG0272|consen 301 --------------GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG---RCIMFLAGHI--KEILSVAFSPNGYHLA 361 (459)
T ss_pred --------------ccccccceeEecCCCceeeccCccchhheeecccC---cEEEEecccc--cceeeEeECCCceEEe
Confidence 34466778888889999999999999999999998 5668899998 7799999999999999
Q ss_pred EEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeeccccc
Q psy307 572 SGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTL 651 (1019)
Q Consensus 572 sgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~ 651 (1019)
||+.|++++|||++..+.+.++.+|..-|+.|.|+|..+++|+|+|.|+++++|-..+-.
T Consensus 362 Tgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~-------------------- 421 (459)
T KOG0272|consen 362 TGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS-------------------- 421 (459)
T ss_pred ecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc--------------------
Confidence 999999999999999999999999999999999999877999999999999888322110
Q ss_pred ccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCchhhHH
Q psy307 652 TLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNASLEE 725 (1019)
Q Consensus 652 ~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~ 725 (1019)
..-+.. =|.+.|.++..+|++ +.|++++-|.+++||.
T Consensus 422 --------------------~~ksLa---------------GHe~kV~s~Dis~d~--~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 422 --------------------PLKSLA---------------GHEGKVISLDISPDS--QAIATSSFDRTIKLWR 458 (459)
T ss_pred --------------------cchhhc---------------CCccceEEEEeccCC--ceEEEeccCceeeecc
Confidence 000000 267788899999999 8999999999999995
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=286.54 Aligned_cols=274 Identities=19% Similarity=0.319 Sum_probs=246.4
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC-----
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE----- 368 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~----- 368 (1019)
+.++.|.++++++|+.+.+|+.-. ...++.+.-.+..|..++|+| +++++|.|+.|+...||++...
T Consensus 63 ws~Dsr~ivSaSqDGklIvWDs~T-------tnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g~ 134 (343)
T KOG0286|consen 63 WSTDSRRIVSASQDGKLIVWDSFT-------TNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIYPLSTRDAEGN 134 (343)
T ss_pred ecCCcCeEEeeccCCeEEEEEccc-------ccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEEeccccccccc
Confidence 678999999999999999998763 334667777788999999999 6999999999999999999532
Q ss_pred cEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec-C
Q psy307 369 RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN-T 447 (1019)
Q Consensus 369 ~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp-d 447 (1019)
.+..+.+.+|.+-+.|+.|.+|+ .|+++|.|.+..+||+ ..++.+..+.+|.+.|.+++++| +
T Consensus 135 ~~v~r~l~gHtgylScC~f~dD~---------------~ilT~SGD~TCalWDi-e~g~~~~~f~GH~gDV~slsl~p~~ 198 (343)
T KOG0286|consen 135 VRVSRELAGHTGYLSCCRFLDDN---------------HILTGSGDMTCALWDI-ETGQQTQVFHGHTGDVMSLSLSPSD 198 (343)
T ss_pred ceeeeeecCccceeEEEEEcCCC---------------ceEecCCCceEEEEEc-ccceEEEEecCCcccEEEEecCCCC
Confidence 15567899999999999999876 7999999999999999 88899999999999999999999 9
Q ss_pred CCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEe
Q psy307 448 GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQS 527 (1019)
Q Consensus 448 g~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs 527 (1019)
++.|+||+.|++.+|||++.+.++++|..+. ..|.++.|.|+|.-|++|+
T Consensus 199 ~ntFvSg~cD~~aklWD~R~~~c~qtF~ghe------------------------------sDINsv~ffP~G~afatGS 248 (343)
T KOG0286|consen 199 GNTFVSGGCDKSAKLWDVRSGQCVQTFEGHE------------------------------SDINSVRFFPSGDAFATGS 248 (343)
T ss_pred CCeEEecccccceeeeeccCcceeEeecccc------------------------------cccceEEEccCCCeeeecC
Confidence 9999999999999999999999999987643 5677888888999999999
Q ss_pred cCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcC
Q psy307 528 MDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHP 607 (1019)
Q Consensus 528 ~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp 607 (1019)
.|++.++||++... .+..+........|++++||..|++|.+|..|.++.+||.-.++.+..+.+|...|.++..+|
T Consensus 249 DD~tcRlyDlRaD~---~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~ 325 (343)
T KOG0286|consen 249 DDATCRLYDLRADQ---ELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP 325 (343)
T ss_pred CCceeEEEeecCCc---EEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC
Confidence 99999999999873 345666555557899999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEE
Q psy307 608 HEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 608 ~~~~~l~s~s~Dg~I~iw 625 (1019)
+| ..++|||||.++++|
T Consensus 326 DG-~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 326 DG-MAVATGSWDSTLRIW 342 (343)
T ss_pred CC-cEEEecchhHheeec
Confidence 99 799999999999887
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=283.40 Aligned_cols=301 Identities=24% Similarity=0.361 Sum_probs=239.6
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC----CcEEEEEecccCccEeEEEEcCCCCceeEEEeec
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK----ERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~----~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
.+..+++||++.|+.++..+.+..+++++++|.+|.+|++.. -+..++.+.||...|.++..++||
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg---------- 75 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG---------- 75 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC----------
Confidence 345689999999999999998899999999999999999853 346688999999999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceE
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY 481 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~ 481 (1019)
++.++++.|+++++||+ .+++..+.+.+|...|.+++|++|.+.++|||.|++|++||+-.+. ..++....
T Consensus 76 ----~~alS~swD~~lrlWDl-~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~~~~--- 146 (315)
T KOG0279|consen 76 ----NFALSASWDGTLRLWDL-ATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIHEDS--- 146 (315)
T ss_pred ----ceEEeccccceEEEEEe-cCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-EEEEecCC---
Confidence 79999999999999999 6669999999999999999999999999999999999999986543 33332211
Q ss_pred EEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC--CCEEEEEecCCeEEEEEccCcccccceeEEeccccccceE
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN--NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYAC 559 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd--g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~ 559 (1019)
+...|.++.|+|+ ..+|++++.|++|++||+++. +....+.||. ++++
T Consensus 147 -------------------------~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~---~l~~~~~gh~--~~v~ 196 (315)
T KOG0279|consen 147 -------------------------HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC---QLRTTFIGHS--GYVN 196 (315)
T ss_pred -------------------------CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc---chhhcccccc--ccEE
Confidence 1233445555555 689999999999999999876 4567788888 8999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccc
Q psy307 560 SLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEK 639 (1019)
Q Consensus 560 ~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~ 639 (1019)
.+++||||..+++|+.||.+.+||++.++.+.++. |...|.+++|+|+. +.+.+..+..|++| +.....+..++.-
T Consensus 197 t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnr--ywL~~at~~sIkIw-dl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 197 TVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNR--YWLCAATATSIKIW-DLESKAVVEELKL 272 (315)
T ss_pred EEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCc--eeEeeccCCceEEE-eccchhhhhhccc
Confidence 99999999999999999999999999999988875 56789999999985 55555566667665 4433222211100
Q ss_pred cCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCC
Q psy307 640 QVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDK 719 (1019)
Q Consensus 640 ~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~ 719 (1019)
. +... ......-.-+.|+||+|+ +.+++|..|+
T Consensus 273 d-----------------------------------~~g~----------s~~~~~~~clslaws~dG--~tLf~g~td~ 305 (315)
T KOG0279|consen 273 D-----------------------------------GIGP----------SSKAGDPICLSLAWSADG--QTLFAGYTDN 305 (315)
T ss_pred c-----------------------------------cccc----------ccccCCcEEEEEEEcCCC--cEEEeeecCC
Confidence 0 0000 000112224569999999 8999999999
Q ss_pred chhhHHH
Q psy307 720 NASLEEK 726 (1019)
Q Consensus 720 ~i~lw~~ 726 (1019)
.|++|+.
T Consensus 306 ~irv~qv 312 (315)
T KOG0279|consen 306 VIRVWQV 312 (315)
T ss_pred cEEEEEe
Confidence 9999963
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=302.90 Aligned_cols=389 Identities=16% Similarity=0.247 Sum_probs=293.0
Q ss_pred CCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeecc-CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEE
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEG-HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVR 373 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~g-H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~ 373 (1019)
.+++..++++....-+++|+.+. .+.+..|++ |+++|.-++|+|. +.+|++|+.||.|+|||+ ..+.+.+
T Consensus 71 ~~d~~~L~~a~rs~llrv~~L~t-------gk~irswKa~He~Pvi~ma~~~~-g~LlAtggaD~~v~VWdi-~~~~~th 141 (775)
T KOG0319|consen 71 TPDEEVLVTASRSQLLRVWSLPT-------GKLIRSWKAIHEAPVITMAFDPT-GTLLATGGADGRVKVWDI-KNGYCTH 141 (775)
T ss_pred cCCccEEEEeeccceEEEEEccc-------chHhHhHhhccCCCeEEEEEcCC-CceEEeccccceEEEEEe-eCCEEEE
Confidence 44578899999999999998874 378999999 9999999999995 699999999999999999 7789999
Q ss_pred EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE
Q psy307 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS 453 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S 453 (1019)
.+.||.+.|.++.|+|+-.+ .+|++|+.|+++++||+.....++.++..|.+.|++++|++|+..+++
T Consensus 142 ~fkG~gGvVssl~F~~~~~~------------~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls 209 (775)
T KOG0319|consen 142 SFKGHGGVVSSLLFHPHWNR------------WLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLS 209 (775)
T ss_pred EecCCCceEEEEEeCCccch------------hheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEE
Confidence 99999999999999998642 579999999999999997677788899999999999999999999999
Q ss_pred EEcCCeEEEEECCCCceEEEEecCCceEEEEEecC-----CCeeee----------------------------------
Q psy307 454 AGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPD-----EDKQHL---------------------------------- 494 (1019)
Q Consensus 454 ~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~-----~~~~~~---------------------------------- 494 (1019)
+|.|..|.|||+.+.++..++.....+-++.+-++ +.....
T Consensus 210 ~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~ 289 (775)
T KOG0319|consen 210 VGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLA 289 (775)
T ss_pred eccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhccee
Confidence 99999999999976665555543333333333222 000000
Q ss_pred --------------------------------------------------------------ccCCCceeeeCCCCCccc
Q psy307 495 --------------------------------------------------------------DIPVDMKYIADPTMHSMP 512 (1019)
Q Consensus 495 --------------------------------------------------------------~~~~~~~~i~~~~~~~i~ 512 (1019)
+.+.....+...|...|.
T Consensus 290 ~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vl 369 (775)
T KOG0319|consen 290 IESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVL 369 (775)
T ss_pred ccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhhee
Confidence 112222234555666777
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEccCccc-ccceeEEec----------------------------------------
Q psy307 513 AVTSSPNNKWLACQSMDNKILIFSALNRFK-LNRKKTFEG---------------------------------------- 551 (1019)
Q Consensus 513 ~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~-~~~~~~l~g---------------------------------------- 551 (1019)
++....+|.+|++|+.|+++++|.+.++.. ..++....|
T Consensus 370 SL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~ 449 (775)
T KOG0319|consen 370 SLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF 449 (775)
T ss_pred eeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc
Confidence 888667788999999999999997732210 000000001
Q ss_pred ----------cccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCc
Q psy307 552 ----------HMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAA 621 (1019)
Q Consensus 552 ----------h~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~ 621 (1019)
+.+...|++++++|+.+++||||.|.+.+||++..+.+..++.+|...|+++.|+|.+ +.++|+|.|++
T Consensus 450 ~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~d-q~laT~SgD~T 528 (775)
T KOG0319|consen 450 PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKND-QLLATCSGDKT 528 (775)
T ss_pred cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecccc-ceeEeccCCce
Confidence 1122458899999999999999999999999999999999999999999999999987 79999999999
Q ss_pred EEEEeccceeeeeeeccccCCceeec----ccccccchhhhhhhcccccCCCceeEEEeecCCCceEEecccccc-----
Q psy307 622 TAKVQDANIVKIAVEMEKQVPQLYQF----NQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNE----- 692 (1019)
Q Consensus 622 I~iwwd~~i~ki~~e~~~~v~ql~~l----~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~----- 692 (1019)
|++| ..........+.++...+... +.+..+|...++..+ +|+.++..-
T Consensus 529 vKIW-~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliK---------------------lWnikt~eC~~tlD 586 (775)
T KOG0319|consen 529 VKIW-SISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIK---------------------LWNIKTNECEMTLD 586 (775)
T ss_pred EEEE-EeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEE---------------------EEeccchhhhhhhh
Confidence 9776 444444555555555443321 123333333333333 444433332
Q ss_pred ccCCceEEEEecCCccHHHHHhhcCCCchhhHHHHHH
Q psy307 693 IKNGSVLRLAFSASKTADDILSKLSDKNASLEEKTAA 729 (1019)
Q Consensus 693 I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~~~~~ 729 (1019)
.|+..|..|+.+|.. ..+++|+.||.|.+|+.-.+
T Consensus 587 ~H~DrvWaL~~~~~~--~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 587 AHNDRVWALSVSPLL--DMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred hccceeEEEeecCcc--ceeEecCCCeEEEEeecCcH
Confidence 378889999999998 47899999999999984333
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-31 Score=285.92 Aligned_cols=343 Identities=19% Similarity=0.292 Sum_probs=256.5
Q ss_pred eeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec---
Q psy307 300 SFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY--- 376 (1019)
Q Consensus 300 ~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~--- 376 (1019)
++++++.|..|.++.-+ |.+--.+++.|++-|.|++|+|| |.+++|++.||+|.|||= .+++.+..+.
T Consensus 162 Ri~T~sdDn~v~ffeGP-------PFKFk~s~r~HskFV~~VRysPD-G~~Fat~gsDgki~iyDG-ktge~vg~l~~~~ 232 (603)
T KOG0318|consen 162 RIATGSDDNTVAFFEGP-------PFKFKSSFREHSKFVNCVRYSPD-GSRFATAGSDGKIYIYDG-KTGEKVGELEDSD 232 (603)
T ss_pred EEEeccCCCeEEEeeCC-------CeeeeecccccccceeeEEECCC-CCeEEEecCCccEEEEcC-CCccEEEEecCCC
Confidence 47899999999999665 44567789999999999999997 899999999999999997 5566677776
Q ss_pred ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCC-------------------------------
Q psy307 377 GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE------------------------------- 425 (1019)
Q Consensus 377 gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~------------------------------- 425 (1019)
+|.+.|..++|+||+ ..++++|.|.+++|||+...
T Consensus 233 aHkGsIfalsWsPDs--------------~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl 298 (603)
T KOG0318|consen 233 AHKGSIFALSWSPDS--------------TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSL 298 (603)
T ss_pred CccccEEEEEECCCC--------------ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEc
Confidence 899999999999999 46667777777777776321
Q ss_pred -----------CeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEe--cCC--------------
Q psy307 426 -----------HRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFT--SRK-------------- 478 (1019)
Q Consensus 426 -----------~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~--~~~-------------- 478 (1019)
..+...+.||...|+++..++++++|+||++||.|.-||..+|..-+... +..
T Consensus 299 ~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~ 378 (603)
T KOG0318|consen 299 SGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELF 378 (603)
T ss_pred CcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEE
Confidence 12445667999999999999999999999999999999997765422210 011
Q ss_pred ----------------------------ceEEEEEecCCCeeeeccCCCcee-------eeCCCCCcccEEEEcCCCCEE
Q psy307 479 ----------------------------VAYCVKFHPDEDKQHLDIPVDMKY-------IADPTMHSMPAVTSSPNNKWL 523 (1019)
Q Consensus 479 ----------------------------~v~~v~~~p~~~~~~~~~~~~~~~-------i~~~~~~~i~~v~~spdg~~L 523 (1019)
.+.+++..+++...++....+... ...+......+++++|++..+
T Consensus 379 t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~v 458 (603)
T KOG0318|consen 379 TIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEV 458 (603)
T ss_pred EEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEE
Confidence 122233333332222211111111 122234456799999999999
Q ss_pred EEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee-eeeccCCCEEE
Q psy307 524 ACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFK-KWKAHDGVCIS 602 (1019)
Q Consensus 524 asgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~-~l~~h~~~V~s 602 (1019)
++|+.||.|+||.+...... ....+..|. +.+++++||||+.|||+|+..+.+.+||+.+.+... .+.-|.+.|.+
T Consensus 459 aVGG~Dgkvhvysl~g~~l~-ee~~~~~h~--a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~ 535 (603)
T KOG0318|consen 459 AVGGQDGKVHVYSLSGDELK-EEAKLLEHR--AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINC 535 (603)
T ss_pred EEecccceEEEEEecCCccc-ceeeeeccc--CCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEE
Confidence 99999999999999875432 333445565 789999999999999999999999999999987743 34459999999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCc
Q psy307 603 TLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNK 682 (1019)
Q Consensus 603 l~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~ 682 (1019)
++|+|++ .+++|||.|.+|++|--.+ |..+
T Consensus 536 ~aWsP~n-~~vATGSlDt~Viiysv~k---------------------------------------P~~~---------- 565 (603)
T KOG0318|consen 536 VAWSPNN-KLVATGSLDTNVIIYSVKK---------------------------------------PAKH---------- 565 (603)
T ss_pred EEeCCCc-eEEEeccccceEEEEEccC---------------------------------------hhhh----------
Confidence 9999998 6999999999997762111 1111
Q ss_pred eEEeccccccccCCceEEEEecCCccHHHHHhhcCCCchhhHHH
Q psy307 683 NYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNASLEEK 726 (1019)
Q Consensus 683 ~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~~ 726 (1019)
++.+ -.|.+.|+.|.|-.+.+ +++..+|.+|++|..
T Consensus 566 --i~ik---nAH~~gVn~v~wlde~t---vvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 566 --IIIK---NAHLGGVNSVAWLDEST---VVSSGQDANIKVWNV 601 (603)
T ss_pred --eEec---cccccCceeEEEecCce---EEeccCcceeEEecc
Confidence 1100 13545588888888865 899999999999974
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=269.19 Aligned_cols=271 Identities=22% Similarity=0.365 Sum_probs=226.0
Q ss_pred CCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecc
Q psy307 298 GRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG 377 (1019)
Q Consensus 298 gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g 377 (1019)
-..+++++.|..+.+|+..... ...+..++.++||+..|+.+..+++ +++.+|+|.|+++++||+ ..++..+.+.|
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd--~~~G~~~r~~~GHsH~v~dv~~s~d-g~~alS~swD~~lrlWDl-~~g~~t~~f~G 103 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDD--IKYGVPVRRLTGHSHFVSDVVLSSD-GNFALSASWDGTLRLWDL-ATGESTRRFVG 103 (315)
T ss_pred CceEEEcccceEEEEEEeccCc--cccCceeeeeeccceEecceEEccC-CceEEeccccceEEEEEe-cCCcEEEEEEe
Confidence 4567899999999999987653 3346778999999999999999996 899999999999999999 45588899999
Q ss_pred cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEc--cccccEeEEEEecC--CCEEEE
Q psy307 378 HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYY--GHRQAVRDICFNNT--GTNFIS 453 (1019)
Q Consensus 378 h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~--~H~~~V~sl~fspd--g~~l~S 453 (1019)
|...|.+++|++|. ..|++||.|.+|++|++. +.+..+.. +|...|+|+.|+|+ ..+|++
T Consensus 104 H~~dVlsva~s~dn--------------~qivSGSrDkTiklwnt~--g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs 167 (315)
T KOG0279|consen 104 HTKDVLSVAFSTDN--------------RQIVSGSRDKTIKLWNTL--GVCKYTIHEDSHREWVSCVRFSPNESNPIIVS 167 (315)
T ss_pred cCCceEEEEecCCC--------------ceeecCCCcceeeeeeec--ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence 99999999999998 689999999999999983 33333333 34899999999998 678999
Q ss_pred EEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEE
Q psy307 454 AGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKIL 533 (1019)
Q Consensus 454 ~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~ 533 (1019)
+|.|++|++||+++.+....+.. |.+.++.+++||||..+++|+.||.+.
T Consensus 168 ~s~DktvKvWnl~~~~l~~~~~g------------------------------h~~~v~t~~vSpDGslcasGgkdg~~~ 217 (315)
T KOG0279|consen 168 ASWDKTVKVWNLRNCQLRTTFIG------------------------------HSGYVNTVTVSPDGSLCASGGKDGEAM 217 (315)
T ss_pred ccCCceEEEEccCCcchhhcccc------------------------------ccccEEEEEECCCCCEEecCCCCceEE
Confidence 99999999999998776655543 446788899999999999999999999
Q ss_pred EEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec----c-----CCCEEEEE
Q psy307 534 IFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA----H-----DGVCISTL 604 (1019)
Q Consensus 534 iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~----h-----~~~V~sl~ 604 (1019)
+||++.+.. ...+.+. ..|.+++|+|+.-+|+.+... .|+|||+.++..+..++. . ...+.+++
T Consensus 218 LwdL~~~k~---lysl~a~---~~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clsla 290 (315)
T KOG0279|consen 218 LWDLNEGKN---LYSLEAF---DIVNSLCFSPNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLA 290 (315)
T ss_pred EEEccCCce---eEeccCC---CeEeeEEecCCceeEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEEEE
Confidence 999998743 3444333 679999999998777766554 599999999988776642 1 33578889
Q ss_pred EcCCCCcEEEEEeCCCcEEEEe
Q psy307 605 WHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 605 ~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
|+++| +.|++|-.|+.|++|.
T Consensus 291 ws~dG-~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 291 WSADG-QTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EcCCC-cEEEeeecCCcEEEEE
Confidence 99999 7999999999998873
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=260.75 Aligned_cols=289 Identities=19% Similarity=0.299 Sum_probs=242.9
Q ss_pred CCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcE-EEEEe
Q psy307 297 QGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERR-CVRTY 375 (1019)
Q Consensus 297 ~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~-~~~~~ 375 (1019)
.--.++++++|.+|++|... .+.+..++....+.|+.+...|+ ++.||+|+ .-.||+||+..... ++.++
T Consensus 9 ~~viLvsA~YDhTIRfWqa~-------tG~C~rTiqh~dsqVNrLeiTpd-k~~LAaa~-~qhvRlyD~~S~np~Pv~t~ 79 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQAL-------TGICSRTIQHPDSQVNRLEITPD-KKDLAAAG-NQHVRLYDLNSNNPNPVATF 79 (311)
T ss_pred CceEEEeccCcceeeeeehh-------cCeEEEEEecCccceeeEEEcCC-cchhhhcc-CCeeEEEEccCCCCCceeEE
Confidence 34578899999999999654 56789999999999999999996 66777665 46899999976544 89999
Q ss_pred cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEE
Q psy307 376 YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG 455 (1019)
Q Consensus 376 ~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s 455 (1019)
.+|.+.|+.+.|..+| +.+++||.||+++|||++. ...+....|.++|+++..+|+...|++|.
T Consensus 80 e~h~kNVtaVgF~~dg--------------rWMyTgseDgt~kIWdlR~--~~~qR~~~~~spVn~vvlhpnQteLis~d 143 (311)
T KOG0315|consen 80 EGHTKNVTAVGFQCDG--------------RWMYTGSEDGTVKIWDLRS--LSCQRNYQHNSPVNTVVLHPNQTELISGD 143 (311)
T ss_pred eccCCceEEEEEeecC--------------eEEEecCCCceEEEEeccC--cccchhccCCCCcceEEecCCcceEEeec
Confidence 9999999999999999 7999999999999999965 33444556779999999999999999999
Q ss_pred cCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEE
Q psy307 456 YDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIF 535 (1019)
Q Consensus 456 ~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iw 535 (1019)
.+|.|++||+....+...+.. + ....|.++++.|+|.+++.+...|..++|
T Consensus 144 qsg~irvWDl~~~~c~~~liP-----------e------------------~~~~i~sl~v~~dgsml~a~nnkG~cyvW 194 (311)
T KOG0315|consen 144 QSGNIRVWDLGENSCTHELIP-----------E------------------DDTSIQSLTVMPDGSMLAAANNKGNCYVW 194 (311)
T ss_pred CCCcEEEEEccCCccccccCC-----------C------------------CCcceeeEEEcCCCcEEEEecCCccEEEE
Confidence 999999999987765443321 1 12567889999999999999999999999
Q ss_pred EccCc---ccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeeeeeccCCCEEEEEEcCCCCc
Q psy307 536 SALNR---FKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTT-KLFKKWKAHDGVCISTLWHPHEPS 611 (1019)
Q Consensus 536 d~~~~---~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~-~~l~~l~~h~~~V~sl~~sp~~~~ 611 (1019)
++.+. ..+.++..+..|. +++..+.+|||+++||+++.|.+++||+..+. +.-..+++|...++.++||.++ .
T Consensus 195 ~l~~~~~~s~l~P~~k~~ah~--~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg-~ 271 (311)
T KOG0315|consen 195 RLLNHQTASELEPVHKFQAHN--GHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADG-E 271 (311)
T ss_pred EccCCCccccceEhhheeccc--ceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCc-c
Confidence 98754 2344556677787 88999999999999999999999999999887 6677889999999999999998 6
Q ss_pred EEEEEeCCCcEEEEeccceeeeeeeccccCCc
Q psy307 612 KVVTAGWDAATAKVQDANIVKIAVEMEKQVPQ 643 (1019)
Q Consensus 612 ~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~q 643 (1019)
+|+||+.|+.++ .|+....+......++...
T Consensus 272 YlvTassd~~~r-lW~~~~~k~v~qy~gh~K~ 302 (311)
T KOG0315|consen 272 YLVTASSDHTAR-LWDLSAGKEVRQYQGHHKA 302 (311)
T ss_pred EEEecCCCCcee-ecccccCceeeecCCcccc
Confidence 999999998875 5677777777666666544
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-31 Score=267.34 Aligned_cols=289 Identities=17% Similarity=0.251 Sum_probs=244.4
Q ss_pred ceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCc
Q psy307 327 QVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAH 406 (1019)
Q Consensus 327 ~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~ 406 (1019)
..++|+||.+.|.++.|++| .+.|+|+|.||.+.|||..+.. .++.+.-....|..++|+|.| +
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~D-sr~ivSaSqDGklIvWDs~Ttn-K~haipl~s~WVMtCA~sPSg--------------~ 110 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTD-SRRIVSASQDGKLIVWDSFTTN-KVHAIPLPSSWVMTCAYSPSG--------------N 110 (343)
T ss_pred eEEEecccccceeeeEecCC-cCeEEeeccCCeEEEEEccccc-ceeEEecCceeEEEEEECCCC--------------C
Confidence 34799999999999999996 8899999999999999996554 456667778899999999999 7
Q ss_pred EEEEEeCCCcEEEEEccCC--C---eEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceE
Q psy307 407 LLLSCSMDCRVKLWEVYKE--H---RCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY 481 (1019)
Q Consensus 407 ~L~sgs~Dg~I~IWDl~~~--~---~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~ 481 (1019)
++++|+.|+...||++... . ...+.+.+|.+.+.|+.|.+| ..|+++|.|.+..+||+++|+.+..|..+
T Consensus 111 ~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH---- 185 (343)
T KOG0286|consen 111 FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGH---- 185 (343)
T ss_pred eEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCC----
Confidence 9999999999999999633 1 456779999999999999975 57999999999999999999998888754
Q ss_pred EEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC-CCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEE
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP-NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~ 560 (1019)
...|.+++++| +++.+++|+.|+..++||++.+ ...++|.||. .-|++
T Consensus 186 --------------------------~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~---~c~qtF~ghe--sDINs 234 (343)
T KOG0286|consen 186 --------------------------TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG---QCVQTFEGHE--SDINS 234 (343)
T ss_pred --------------------------cccEEEEecCCCCCCeEEecccccceeeeeccCc---ceeEeecccc--cccce
Confidence 34566677777 8899999999999999999988 6779999998 66999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc--CCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeecc
Q psy307 561 LDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH--DGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEME 638 (1019)
Q Consensus 561 v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h--~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~ 638 (1019)
+.|.|+|.-+++|+.|+++++||++..+.+..+... ..+|++++|+..| ++|++|..|.++.+|....
T Consensus 235 v~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk--------- 304 (343)
T KOG0286|consen 235 VRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLK--------- 304 (343)
T ss_pred EEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccc-cEEEeeecCCceeEeeccc---------
Confidence 999999999999999999999999999988888632 3589999999988 7999999999997762221
Q ss_pred ccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCC
Q psy307 639 KQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSD 718 (1019)
Q Consensus 639 ~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d 718 (1019)
++.. .... =|...|.||..+||+ -.+.+|+.|
T Consensus 305 ------------------------------~e~v-g~L~---------------GHeNRvScl~~s~DG--~av~TgSWD 336 (343)
T KOG0286|consen 305 ------------------------------GERV-GVLA---------------GHENRVSCLGVSPDG--MAVATGSWD 336 (343)
T ss_pred ------------------------------cceE-EEee---------------ccCCeeEEEEECCCC--cEEEecchh
Confidence 1111 1111 255678999999999 568999999
Q ss_pred CchhhHH
Q psy307 719 KNASLEE 725 (1019)
Q Consensus 719 ~~i~lw~ 725 (1019)
.++|||.
T Consensus 337 s~lriW~ 343 (343)
T KOG0286|consen 337 STLRIWA 343 (343)
T ss_pred HheeecC
Confidence 9999993
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=304.94 Aligned_cols=257 Identities=29% Similarity=0.510 Sum_probs=228.4
Q ss_pred CccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC------------------------------c
Q psy307 320 RCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE------------------------------R 369 (1019)
Q Consensus 320 ~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~------------------------------~ 369 (1019)
+..+|.-+..++.--...|+|..|+++ +.+||.|-.|..|++|.+... .
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSdd-ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDD-SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCC-cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 344677777888777789999999996 679999999999999998420 1
Q ss_pred EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCC
Q psy307 370 RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT 449 (1019)
Q Consensus 370 ~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~ 449 (1019)
...+++.||.++|..+.|+|+. ++|+++|.|++|++|.+ .+..++..+.||..+|+++.|+|.|-
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~--------------rfLlScSED~svRLWsl-~t~s~~V~y~GH~~PVwdV~F~P~Gy 506 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDR--------------RFLLSCSEDSSVRLWSL-DTWSCLVIYKGHLAPVWDVQFAPRGY 506 (707)
T ss_pred ceeEEeecCCCceeeeeecccc--------------cceeeccCCcceeeeec-ccceeEEEecCCCcceeeEEecCCce
Confidence 2345688999999999999998 79999999999999999 77888899999999999999999999
Q ss_pred EEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC
Q psy307 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD 529 (1019)
Q Consensus 450 ~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D 529 (1019)
+|+|+|.|++.++|......+++.+.+ |...+.|+.|||+..|+++||.|
T Consensus 507 YFatas~D~tArLWs~d~~~PlRifag------------------------------hlsDV~cv~FHPNs~Y~aTGSsD 556 (707)
T KOG0263|consen 507 YFATASHDQTARLWSTDHNKPLRIFAG------------------------------HLSDVDCVSFHPNSNYVATGSSD 556 (707)
T ss_pred EEEecCCCceeeeeecccCCchhhhcc------------------------------cccccceEEECCcccccccCCCC
Confidence 999999999999999987776665544 44567788889999999999999
Q ss_pred CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCC
Q psy307 530 NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609 (1019)
Q Consensus 530 g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~ 609 (1019)
.+|++||+.++ ..++.|.||. ++|.+++|||+|++|++|+.||.|.|||+.+++++..+.+|.+.|.++.|+.+|
T Consensus 557 ~tVRlWDv~~G---~~VRiF~GH~--~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg 631 (707)
T KOG0263|consen 557 RTVRLWDVSTG---NSVRIFTGHK--GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDG 631 (707)
T ss_pred ceEEEEEcCCC---cEEEEecCCC--CceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCC
Confidence 99999999998 5578899998 889999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeCCCcEEEEeccc
Q psy307 610 PSKVVTAGWDAATAKVQDAN 629 (1019)
Q Consensus 610 ~~~l~s~s~Dg~I~iwwd~~ 629 (1019)
..||+||.|.+|++| |..
T Consensus 632 -~vLasgg~DnsV~lW-D~~ 649 (707)
T KOG0263|consen 632 -NVLASGGADNSVRLW-DLT 649 (707)
T ss_pred -CEEEecCCCCeEEEE-Ech
Confidence 699999999999776 443
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=280.50 Aligned_cols=285 Identities=26% Similarity=0.440 Sum_probs=253.2
Q ss_pred CCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEE
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRT 374 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~ 374 (1019)
.+.--..++++.|.++++|+.. .+.+...++||+++|..|+|+. .|.+|++++.|-.+++||.....+|++.
T Consensus 117 hp~~~~v~~as~d~tikv~D~~-------tg~~e~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~~~~~~c~ks 188 (406)
T KOG0295|consen 117 HPSEALVVSASEDATIKVFDTE-------TGELERSLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDFDTFFRCIKS 188 (406)
T ss_pred ccCceEEEEecCCceEEEEEcc-------chhhhhhhhccccceeEEEEec-CccEEEecCCccchhheeHHHHHHHHHH
Confidence 4555667788899999999876 4566889999999999999998 5899999999999999999777889999
Q ss_pred ecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEE
Q psy307 375 YYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISA 454 (1019)
Q Consensus 375 ~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~ 454 (1019)
+.+|...|.+++|-|.| .+|+|++.|.+|+.|++ .++.++.++.+|...|..+..+.||..++++
T Consensus 189 ~~gh~h~vS~V~f~P~g--------------d~ilS~srD~tik~We~-~tg~cv~t~~~h~ewvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 189 LIGHEHGVSSVFFLPLG--------------DHILSCSRDNTIKAWEC-DTGYCVKTFPGHSEWVRMVRVNQDGTIIASC 253 (406)
T ss_pred hcCcccceeeEEEEecC--------------CeeeecccccceeEEec-ccceeEEeccCchHhEEEEEecCCeeEEEec
Confidence 99999999999999988 79999999999999999 8899999999999999999999999999999
Q ss_pred EcCCeEEEEECCCCceEEEEecC-CceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEc-CCCCEEEEEecCCeE
Q psy307 455 GYDRYLKLWDTESGECISRFTSR-KVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSS-PNNKWLACQSMDNKI 532 (1019)
Q Consensus 455 s~Dg~I~lWDl~t~~~i~~~~~~-~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~s-pdg~~Lasgs~Dg~I 532 (1019)
+.|.+|++|-+.+++|...++.+ .++-|++|.|....-. |....-+ ..++++.+++.|++|
T Consensus 254 s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~-----------------i~~at~~~~~~~~l~s~SrDktI 316 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPS-----------------ISEATGSTNGGQVLGSGSRDKTI 316 (406)
T ss_pred CCCceEEEEEeccchhhhhhhccccceEEEEecccccCcc-----------------hhhccCCCCCccEEEeecccceE
Confidence 99999999999999998888755 5778999988643111 0000001 146799999999999
Q ss_pred EEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcE
Q psy307 533 LIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSK 612 (1019)
Q Consensus 533 ~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~ 612 (1019)
++||+.++ .++.++.||. .+|+.++|+|.|+||+++..|+++++||++++++.+++.+|...|+++.|+.+.+ +
T Consensus 317 k~wdv~tg---~cL~tL~ghd--nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p-~ 390 (406)
T KOG0295|consen 317 KIWDVSTG---MCLFTLVGHD--NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAP-Y 390 (406)
T ss_pred EEEeccCC---eEEEEEeccc--ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCc-e
Confidence 99999998 6678999998 7899999999999999999999999999999999999999999999999999886 9
Q ss_pred EEEEeCCCcEEEE
Q psy307 613 VVTAGWDAATAKV 625 (1019)
Q Consensus 613 l~s~s~Dg~I~iw 625 (1019)
++||+-|.++++|
T Consensus 391 VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 391 VVTGSVDQTVKVW 403 (406)
T ss_pred EEeccccceeeee
Confidence 9999999999877
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=267.98 Aligned_cols=281 Identities=25% Similarity=0.393 Sum_probs=246.7
Q ss_pred ceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCc
Q psy307 327 QVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAH 406 (1019)
Q Consensus 327 ~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~ 406 (1019)
++-.+.||++.|+.+.|+| +|.+|+||+.|..|.+|+++...+-...+++|+++|..+.|.+|+ .
T Consensus 39 p~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~--------------s 103 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG--------------S 103 (338)
T ss_pred hhhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCC--------------C
Confidence 4557889999999999999 599999999999999999988777788899999999999999999 6
Q ss_pred EEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCE-EEEEEcCCeEEEEECCCCceEEEEecCCceEEEEE
Q psy307 407 LLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTN-FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKF 485 (1019)
Q Consensus 407 ~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~-l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~ 485 (1019)
.|++++.|.+|+.||+ .+++++..+.+|...|+++.-+.-|.. +.|++.||+++|||+++..+++++.....+.++.|
T Consensus 104 ~i~S~gtDk~v~~wD~-~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f 182 (338)
T KOG0265|consen 104 HILSCGTDKTVRGWDA-ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGF 182 (338)
T ss_pred EEEEecCCceEEEEec-ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEe
Confidence 9999999999999999 888999999999999999986655554 66889999999999999999999998889999999
Q ss_pred ecCCCeeee----------cc-CCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccc-eeEEeccc
Q psy307 486 HPDEDKQHL----------DI-PVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNR-KKTFEGHM 553 (1019)
Q Consensus 486 ~p~~~~~~~----------~~-~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~-~~~l~gh~ 553 (1019)
..++..... +. .....++...|...|+.+..+|+|.++.+-++|+++++||++.....++ ++.+.+|.
T Consensus 183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred cccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecch
Confidence 887664433 11 2245667778899999999999999999999999999999986544444 67777765
Q ss_pred cc--cceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEE
Q psy307 554 VA--GYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAK 624 (1019)
Q Consensus 554 ~~--~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~i 624 (1019)
.. .....++|+|+++++..|+.|..+++||..+...+..+.+|.+.|++++|+|.. .++.+|+.|.+|++
T Consensus 263 hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e-~iils~~sdk~i~l 334 (338)
T KOG0265|consen 263 HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTE-PIILSCSSDKTIYL 334 (338)
T ss_pred hhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCC-cEEEEeccCceeEe
Confidence 33 335678999999999999999999999999999999999999999999999998 59999999999854
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-32 Score=286.62 Aligned_cols=274 Identities=24% Similarity=0.408 Sum_probs=235.4
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.+.++||.+++|+..|.+.||+.... .--..+..|..+|.++.|+++ +..++||+.+|.|++|+..- ..+
T Consensus 103 ~WtPeGRRLltgs~SGEFtLWNg~~f-------nFEtilQaHDs~Vr~m~ws~~-g~wmiSgD~gG~iKyWqpnm--nnV 172 (464)
T KOG0284|consen 103 RWTPEGRRLLTGSQSGEFTLWNGTSF-------NFETILQAHDSPVRTMKWSHN-GTWMISGDKGGMIKYWQPNM--NNV 172 (464)
T ss_pred EEcCCCceeEeecccccEEEecCcee-------eHHHHhhhhcccceeEEEccC-CCEEEEcCCCceEEecccch--hhh
Confidence 47889999999999999999977422 123456799999999999995 89999999999999999732 334
Q ss_pred EEecccC-ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEE
Q psy307 373 RTYYGHR-QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNF 451 (1019)
Q Consensus 373 ~~~~gh~-~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l 451 (1019)
..+.+|. ..|++++|+|.. ..++++|.||+|+|||. ...+.-..+.||.-.|.++.|+|....+
T Consensus 173 k~~~ahh~eaIRdlafSpnD--------------skF~t~SdDg~ikiWdf-~~~kee~vL~GHgwdVksvdWHP~kgLi 237 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPND--------------SKFLTCSDDGTIKIWDF-RMPKEERVLRGHGWDVKSVDWHPTKGLI 237 (464)
T ss_pred HHhhHhhhhhhheeccCCCC--------------ceeEEecCCCeEEEEec-cCCchhheeccCCCCcceeccCCcccee
Confidence 5555555 899999999976 58999999999999999 5555566779999999999999999999
Q ss_pred EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCe
Q psy307 452 ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNK 531 (1019)
Q Consensus 452 ~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~ 531 (1019)
+++|.|..|++||.++|.|+.++..++ ..|..+.|+|++++|+++|.|..
T Consensus 238 asgskDnlVKlWDprSg~cl~tlh~HK------------------------------ntVl~~~f~~n~N~Llt~skD~~ 287 (464)
T KOG0284|consen 238 ASGSKDNLVKLWDPRSGSCLATLHGHK------------------------------NTVLAVKFNPNGNWLLTGSKDQS 287 (464)
T ss_pred EEccCCceeEeecCCCcchhhhhhhcc------------------------------ceEEEEEEcCCCCeeEEccCCce
Confidence 999999999999999999998776543 55677788889999999999999
Q ss_pred EEEEEccCcccccceeEEeccccccceEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeee-eccCCCEEEEEEcCCC
Q psy307 532 ILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP-DMSYLISGDADGKCYIWDWKTTKLFKKW-KAHDGVCISTLWHPHE 609 (1019)
Q Consensus 532 I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp-dg~~Lasgs~DG~I~IWDl~t~~~l~~l-~~h~~~V~sl~~sp~~ 609 (1019)
+++||++.. ..+.++.+|. ..++++.|+| ...++.+|+.||.|..|.+...+++..+ .+|.+.|++++|||-|
T Consensus 288 ~kv~DiR~m---kEl~~~r~Hk--kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlG 362 (464)
T KOG0284|consen 288 CKVFDIRTM---KELFTYRGHK--KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLG 362 (464)
T ss_pred EEEEehhHh---HHHHHhhcch--hhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccc
Confidence 999999854 5567888998 6699999999 5668999999999999999977777766 4899999999999998
Q ss_pred CcEEEEEeCCCcEEEEec
Q psy307 610 PSKVVTAGWDAATAKVQD 627 (1019)
Q Consensus 610 ~~~l~s~s~Dg~I~iwwd 627 (1019)
.+|++|+.|.+++.|-.
T Consensus 363 -hil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 363 -HILATGSNDRTVRFWTR 379 (464)
T ss_pred -eeEeecCCCcceeeecc
Confidence 79999999999977633
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-31 Score=279.62 Aligned_cols=300 Identities=20% Similarity=0.298 Sum_probs=248.5
Q ss_pred eeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC--cEEEEEecccCccEeEEEE
Q psy307 310 TNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE--RRCVRTYYGHRQAVRDICF 387 (1019)
Q Consensus 310 v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~--~~~~~~~~gh~~~V~~i~f 387 (1019)
+.+.......+..+|.+..+++..|++.|+-+.||+ +|.+||||+.|.+..||++... -+..+++.||..+|..|.|
T Consensus 199 vsll~Dh~c~~~qip~qt~qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~w 277 (519)
T KOG0293|consen 199 VSLLSDHFCGRLQIPSQTWQILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMW 277 (519)
T ss_pred hhhhhhcccCcccCCchhhhhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEE
Confidence 555555555566788899999999999999999999 5999999999999999998543 3567899999999999999
Q ss_pred cCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEE-ccccccEeEEEEecCCCEEEEEEcCCeEEEEECC
Q psy307 388 NNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY-YGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTE 466 (1019)
Q Consensus 388 spdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l-~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~ 466 (1019)
|||. ++|++|+.|..+.+||+.+ +.+...+ .+|...+.+++|.|||..|++|+.|++|..||+.
T Consensus 278 SPDd--------------ryLlaCg~~e~~~lwDv~t-gd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD 342 (519)
T KOG0293|consen 278 SPDD--------------RYLLACGFDEVLSLWDVDT-GDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD 342 (519)
T ss_pred CCCC--------------CeEEecCchHheeeccCCc-chhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence 9998 6899999999999999944 4444443 4567889999999999999999999999999986
Q ss_pred CCceEEEEec--CCceEEEEEecCCCeeeeccCCCcee----------eeCCCCCcccEEEEcCCCCEEEEEecCCeEEE
Q psy307 467 SGECISRFTS--RKVAYCVKFHPDEDKQHLDIPVDMKY----------IADPTMHSMPAVTSSPNNKWLACQSMDNKILI 534 (1019)
Q Consensus 467 t~~~i~~~~~--~~~v~~v~~~p~~~~~~~~~~~~~~~----------i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~i 534 (1019)
... +...+. ...+.+++..+||............. -.......++++++|.+|+++++.-.+..|++
T Consensus 343 gn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~L 421 (519)
T KOG0293|consen 343 GNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHL 421 (519)
T ss_pred cch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEE
Confidence 543 333332 24578999999988765522111111 12234577999999999999999999999999
Q ss_pred EEccCcccccceeEEeccccccceEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEE
Q psy307 535 FSALNRFKLNRKKTFEGHMVAGYACSLDFSP-DMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKV 613 (1019)
Q Consensus 535 wd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp-dg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l 613 (1019)
||+... ..+..+.||..+.++..-+|-- +..++++|+.|+.|+||+..+|+++.++.||...|++++|+|..+.++
T Consensus 422 WDl~e~---~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ 498 (519)
T KOG0293|consen 422 WDLEEN---KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMF 498 (519)
T ss_pred eecchh---hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHh
Confidence 999865 4457788998888888888865 447999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEeccc
Q psy307 614 VTAGWDAATAKVQDAN 629 (1019)
Q Consensus 614 ~s~s~Dg~I~iwwd~~ 629 (1019)
|++|.||+|++|-..+
T Consensus 499 ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 499 ASASDDGTIRIWGPSD 514 (519)
T ss_pred hccCCCCeEEEecCCc
Confidence 9999999999985543
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=298.00 Aligned_cols=242 Identities=28% Similarity=0.452 Sum_probs=215.1
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCC---------Ccc---------------CCccceeeeccCCCCeEEEEEcCCCC
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPD---------RCF---------------LPKTQVHTWEGHTKGISAIRWFPKSA 348 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~---------~~~---------------lp~~~i~~l~gH~~~V~~i~fspd~g 348 (1019)
.++.+++.++.|-.|..|++|+..+.. ... .......++.||+++|..+.|+|+ .
T Consensus 385 ~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd-~ 463 (707)
T KOG0263|consen 385 EFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD-R 463 (707)
T ss_pred eecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccc-c
Confidence 466778888899999999999987521 000 122345679999999999999996 8
Q ss_pred cEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeE
Q psy307 349 HLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRC 428 (1019)
Q Consensus 349 ~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~ 428 (1019)
++|++||.|++||+|.+ ....++..+.||..+|.++.|+|-| .+++|+|.|++.++|.. ....+
T Consensus 464 rfLlScSED~svRLWsl-~t~s~~V~y~GH~~PVwdV~F~P~G--------------yYFatas~D~tArLWs~-d~~~P 527 (707)
T KOG0263|consen 464 RFLLSCSEDSSVRLWSL-DTWSCLVIYKGHLAPVWDVQFAPRG--------------YYFATASHDQTARLWST-DHNKP 527 (707)
T ss_pred cceeeccCCcceeeeec-ccceeEEEecCCCcceeeEEecCCc--------------eEEEecCCCceeeeeec-ccCCc
Confidence 99999999999999999 6678889999999999999999998 79999999999999998 55788
Q ss_pred EEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCC
Q psy307 429 VRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTM 508 (1019)
Q Consensus 429 ~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~ 508 (1019)
.+.+.+|.+.|.|+.|+|++.++++||.|.+|++||+.+|..++.|.++ .
T Consensus 528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH------------------------------~ 577 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH------------------------------K 577 (707)
T ss_pred hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC------------------------------C
Confidence 9999999999999999999999999999999999999999998888654 4
Q ss_pred CcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy307 509 HSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKT 586 (1019)
Q Consensus 509 ~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t 586 (1019)
.+|.++++||+|++|++|+.||.|.+||+.++ ..+..+.+|. +.|.++.||.||..||+|+.|.+|++||+..
T Consensus 578 ~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~---~~v~~l~~Ht--~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 578 GPVTALAFSPCGRYLASGDEDGLIKIWDLANG---SLVKQLKGHT--GTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CceEEEEEcCCCceEeecccCCcEEEEEcCCC---cchhhhhccc--CceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 67888899999999999999999999999988 4567888995 7899999999999999999999999999864
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-30 Score=274.96 Aligned_cols=277 Identities=25% Similarity=0.392 Sum_probs=246.6
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.++.+|..+++|..||.+++|+.. +.++.+|..|+++|.++.|+.+ |.+|++++.||++.+||. ..+.+.
T Consensus 242 ~Wn~~G~~LatG~~~G~~riw~~~--------G~l~~tl~~HkgPI~slKWnk~-G~yilS~~vD~ttilwd~-~~g~~~ 311 (524)
T KOG0273|consen 242 DWNNDGTLLATGSEDGEARIWNKD--------GNLISTLGQHKGPIFSLKWNKK-GTYILSGGVDGTTILWDA-HTGTVK 311 (524)
T ss_pred EecCCCCeEEEeecCcEEEEEecC--------chhhhhhhccCCceEEEEEcCC-CCEEEeccCCccEEEEec-cCceEE
Confidence 578899999999999999999876 4568899999999999999995 899999999999999998 667778
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
..+.-|..+-.++.|-.+. -+++++.||.|+|+.+ ....++.++.+|.+.|.+|.|+|.|..|+
T Consensus 312 q~f~~~s~~~lDVdW~~~~---------------~F~ts~td~~i~V~kv-~~~~P~~t~~GH~g~V~alk~n~tg~LLa 375 (524)
T KOG0273|consen 312 QQFEFHSAPALDVDWQSND---------------EFATSSTDGCIHVCKV-GEDRPVKTFIGHHGEVNALKWNPTGSLLA 375 (524)
T ss_pred EeeeeccCCccceEEecCc---------------eEeecCCCceEEEEEe-cCCCcceeeecccCceEEEEECCCCceEE
Confidence 8888898887888887664 6899999999999999 78889999999999999999999999999
Q ss_pred EEEcCCeEEEEECCCCceEEEEecC-CceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC-CCCEEEEEecCC
Q psy307 453 SAGYDRYLKLWDTESGECISRFTSR-KVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP-NNKWLACQSMDN 530 (1019)
Q Consensus 453 S~s~Dg~I~lWDl~t~~~i~~~~~~-~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp-dg~~Lasgs~Dg 530 (1019)
|+|.|++++||+.....+...+..+ +.++.+.|+|.+. +..+| .+..+++++.|+
T Consensus 376 S~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~-----------------------v~~n~~~~~~l~sas~ds 432 (524)
T KOG0273|consen 376 SCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP-----------------------VTSNPNMNLMLASASFDS 432 (524)
T ss_pred EecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC-----------------------ccCCCcCCceEEEeecCC
Confidence 9999999999999888888888765 6899999999864 22333 467889999999
Q ss_pred eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCC
Q psy307 531 KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEP 610 (1019)
Q Consensus 531 ~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~ 610 (1019)
+|++||+..+ .++..|..|. .+|.+++|||+|+|+|+|+.||.|+||+.+++++++.+.+. +.|..++|+..|
T Consensus 433 tV~lwdv~~g---v~i~~f~kH~--~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G- 505 (524)
T KOG0273|consen 433 TVKLWDVESG---VPIHTLMKHQ--EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAG- 505 (524)
T ss_pred eEEEEEccCC---ceeEeeccCC--CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCC-
Confidence 9999999988 5568888888 78999999999999999999999999999999999999864 459999999999
Q ss_pred cEEEEEeCCCcEEEE
Q psy307 611 SKVVTAGWDAATAKV 625 (1019)
Q Consensus 611 ~~l~s~s~Dg~I~iw 625 (1019)
.+|..+-.||.+.+.
T Consensus 506 ~kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 506 DKLGACASDGSVCVL 520 (524)
T ss_pred CEEEEEecCCCceEE
Confidence 688888899988765
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=283.03 Aligned_cols=285 Identities=20% Similarity=0.365 Sum_probs=237.3
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEE
Q psy307 332 EGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSC 411 (1019)
Q Consensus 332 ~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sg 411 (1019)
..-+.+|..|+|.|+ |+.|++|+..|.+.+|+. ....-...++.|..+|+++.|+++| .+++||
T Consensus 93 NKvkc~V~~v~WtPe-GRRLltgs~SGEFtLWNg-~~fnFEtilQaHDs~Vr~m~ws~~g--------------~wmiSg 156 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPE-GRRLLTGSQSGEFTLWNG-TSFNFETILQAHDSPVRTMKWSHNG--------------TWMISG 156 (464)
T ss_pred cccccceeeEEEcCC-CceeEeecccccEEEecC-ceeeHHHHhhhhcccceeEEEccCC--------------CEEEEc
Confidence 334568999999996 889999999999999997 3222234467899999999999999 799999
Q ss_pred eCCCcEEEEEccCCCeEEEEEcc-ccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCC
Q psy307 412 SMDCRVKLWEVYKEHRCVRTYYG-HRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDED 490 (1019)
Q Consensus 412 s~Dg~I~IWDl~~~~~~~~~l~~-H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~ 490 (1019)
+.+|.|++|+. .. ..+..+.+ |...|++++|+|+...|+++|.||+|+|||....+....+.+
T Consensus 157 D~gG~iKyWqp-nm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~G-------------- 220 (464)
T KOG0284|consen 157 DKGGMIKYWQP-NM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG-------------- 220 (464)
T ss_pred CCCceEEeccc-ch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheecc--------------
Confidence 99999999997 33 33444444 559999999999999999999999999999887665444433
Q ss_pred eeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEE
Q psy307 491 KQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYL 570 (1019)
Q Consensus 491 ~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~L 570 (1019)
|...+.++.|+|....|++||.|+.|++||.+++ .++.++.+|. ..|..+.|+|++++|
T Consensus 221 ----------------HgwdVksvdWHP~kgLiasgskDnlVKlWDprSg---~cl~tlh~HK--ntVl~~~f~~n~N~L 279 (464)
T KOG0284|consen 221 ----------------HGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG---SCLATLHGHK--NTVLAVKFNPNGNWL 279 (464)
T ss_pred ----------------CCCCcceeccCCccceeEEccCCceeEeecCCCc---chhhhhhhcc--ceEEEEEEcCCCCee
Confidence 4456778888888889999999999999999998 5668888888 669999999999999
Q ss_pred EEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccc
Q psy307 571 ISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQT 650 (1019)
Q Consensus 571 asgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~ 650 (1019)
+++|.|..++++|+++-+.+.++++|...|+++.|||-..+++.+||+||.|+.| .... .
T Consensus 280 lt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~-~v~~-------------------~ 339 (464)
T KOG0284|consen 280 LTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHW-VVGL-------------------E 339 (464)
T ss_pred EEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEE-eccc-------------------c
Confidence 9999999999999999999999999999999999999999999999999999776 1110 0
Q ss_pred cccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCchhhHH
Q psy307 651 LTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNASLEE 725 (1019)
Q Consensus 651 ~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~ 725 (1019)
.++ .. ....|.+.|.+|+|+|=+ -.+++|++|.++++|.
T Consensus 340 ~p~-------------------------------~~---i~~AHd~~iwsl~~hPlG--hil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 340 EPL-------------------------------GE---IPPAHDGEIWSLAYHPLG--HILATGSNDRTVRFWT 378 (464)
T ss_pred ccc-------------------------------cC---CCcccccceeeeeccccc--eeEeecCCCcceeeec
Confidence 000 00 011467788999999999 6788999999999997
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=298.90 Aligned_cols=280 Identities=25% Similarity=0.468 Sum_probs=243.7
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.+.++|+.++.+..|+.+++|....... ...+.+.+|...|++++|+|+ +.++++|+.|++|+|||+...+.++
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----~~~~~l~~h~~~v~~~~fs~d-~~~l~s~s~D~tiriwd~~~~~~~~ 239 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKLEGIKS-----NLLRELSGHTRGVSDVAFSPD-GSYLLSGSDDKTLRIWDLKDDGRNL 239 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeecccccc-----hhhccccccccceeeeEECCC-CcEEEEecCCceEEEeeccCCCeEE
Confidence 4688999999999999999998743221 467778999999999999996 7899999999999999997777899
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
+++.+|...|++++|+|+| +++++|+.|++|+|||+ ..+.+...+.+|.+.|++++|+++++.|+
T Consensus 240 ~~l~gH~~~v~~~~f~p~g--------------~~i~Sgs~D~tvriWd~-~~~~~~~~l~~hs~~is~~~f~~d~~~l~ 304 (456)
T KOG0266|consen 240 KTLKGHSTYVTSVAFSPDG--------------NLLVSGSDDGTVRIWDV-RTGECVRKLKGHSDGISGLAFSPDGNLLV 304 (456)
T ss_pred EEecCCCCceEEEEecCCC--------------CEEEEecCCCcEEEEec-cCCeEEEeeeccCCceEEEEECCCCCEEE
Confidence 9999999999999999998 79999999999999999 55999999999999999999999999999
Q ss_pred EEEcCCeEEEEECCCCce--EEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC
Q psy307 453 SAGYDRYLKLWDTESGEC--ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN 530 (1019)
Q Consensus 453 S~s~Dg~I~lWDl~t~~~--i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg 530 (1019)
+++.|+.|+|||+.++.. ...+.... ... .+..+.|+|++.++++++.|+
T Consensus 305 s~s~d~~i~vwd~~~~~~~~~~~~~~~~---------------------------~~~-~~~~~~fsp~~~~ll~~~~d~ 356 (456)
T KOG0266|consen 305 SASYDGTIRVWDLETGSKLCLKLLSGAE---------------------------NSA-PVTSVQFSPNGKYLLSASLDR 356 (456)
T ss_pred EcCCCccEEEEECCCCceeeeecccCCC---------------------------CCC-ceeEEEECCCCcEEEEecCCC
Confidence 999999999999999983 34433221 112 567888999999999999999
Q ss_pred eEEEEEccCcccccceeEEeccccc-cceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc-CCCEEEEEEcCC
Q psy307 531 KILIFSALNRFKLNRKKTFEGHMVA-GYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH-DGVCISTLWHPH 608 (1019)
Q Consensus 531 ~I~iwd~~~~~~~~~~~~l~gh~~~-~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h-~~~V~sl~~sp~ 608 (1019)
.+++||+... .....+.+|... ..+.+...+++|.++++|+.|+.|++||+.++..+..+.+| ...+..+.|+|.
T Consensus 357 ~~~~w~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~ 433 (456)
T KOG0266|consen 357 TLKLWDLRSG---KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPT 433 (456)
T ss_pred eEEEEEccCC---cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCC
Confidence 9999999977 445777788754 23445566889999999999999999999999999999999 889999999998
Q ss_pred CCcEEEEEe--CCCcEEEE
Q psy307 609 EPSKVVTAG--WDAATAKV 625 (1019)
Q Consensus 609 ~~~~l~s~s--~Dg~I~iw 625 (1019)
. .++++++ .|+.+++|
T Consensus 434 ~-~~~~s~s~~~d~~~~~w 451 (456)
T KOG0266|consen 434 E-NLIASSSFEGDGLIRLW 451 (456)
T ss_pred c-CeeeecCcCCCceEEEe
Confidence 7 6888888 68888777
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=277.65 Aligned_cols=423 Identities=15% Similarity=0.181 Sum_probs=307.6
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCC-ccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcE-
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDR-CFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERR- 370 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~-~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~- 370 (1019)
.++++|+.++.+. ...+.+|..+...+ .+.|..+.+++.||-..|++|.|+.| .++|++||.|.+++||++.....
T Consensus 103 ~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~D-Sr~l~~gsrD~s~rl~~v~~~k~~ 180 (893)
T KOG0291|consen 103 KFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDD-SRLLVTGSRDLSARLFGVDGNKNL 180 (893)
T ss_pred EECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccC-CceEEeccccceEEEEEecccccc
Confidence 4789999988875 46788998776555 57888999999999999999999996 88999999999999999954433
Q ss_pred EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccC-----------------------CCe
Q psy307 371 CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-----------------------EHR 427 (1019)
Q Consensus 371 ~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~-----------------------~~~ 427 (1019)
....+.||+..|..+-|..+. .-+++.+.||.+.+|.... ..+
T Consensus 181 ~~~~l~gHkd~VvacfF~~~~--------------~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Ee 246 (893)
T KOG0291|consen 181 FTYALNGHKDYVVACFFGANS--------------LDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEE 246 (893)
T ss_pred ceEeccCCCcceEEEEeccCc--------------ceEEEEecCceEEEEEecCCCcccccccccccccccccccccchh
Confidence 246688999999999998877 5799999999999998741 000
Q ss_pred -----E-----EEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecC-CceEEEEEecCCCeeeecc
Q psy307 428 -----C-----VRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSR-KVAYCVKFHPDEDKQHLDI 496 (1019)
Q Consensus 428 -----~-----~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~-~~v~~v~~~p~~~~~~~~~ 496 (1019)
. ..-+......|++.+|++..+.|++|-..|...++.+..-.+++.+... ..+..+.|+..|+.++++.
T Consensus 247 k~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~ 326 (893)
T KOG0291|consen 247 KTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGC 326 (893)
T ss_pred hhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcC
Confidence 0 1112233478999999999999999999999999999999999999865 7889999999888887755
Q ss_pred CCCc------------eeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEc
Q psy307 497 PVDM------------KYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564 (1019)
Q Consensus 497 ~~~~------------~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fs 564 (1019)
+.-. ..-...|...+++++++|||+++++|+.||.|+|||...+ -+..+|..|+ ..|+.+.|+
T Consensus 327 ~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg---fC~vTFteHt--s~Vt~v~f~ 401 (893)
T KOG0291|consen 327 SKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG---FCFVTFTEHT--SGVTAVQFT 401 (893)
T ss_pred CccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc---eEEEEeccCC--CceEEEEEE
Confidence 4311 1123456778999999999999999999999999999988 4568899998 568999999
Q ss_pred CCCCEEEEEeCCCeEEEEeC--------------------------------------------CCCceeeeeeccCCCE
Q psy307 565 PDMSYLISGDADGKCYIWDW--------------------------------------------KTTKLFKKWKAHDGVC 600 (1019)
Q Consensus 565 pdg~~Lasgs~DG~I~IWDl--------------------------------------------~t~~~l~~l~~h~~~V 600 (1019)
..|+.|++.+.||+|+.||+ +||+++..+.||.++|
T Consensus 402 ~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPV 481 (893)
T KOG0291|consen 402 ARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPV 481 (893)
T ss_pred ecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcc
Confidence 99999999999999888877 4566777788999999
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhh--------hhhhcccccCCCcee
Q psy307 601 ISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSII--------QEICSGWSLSDSEQY 672 (1019)
Q Consensus 601 ~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~--------~~~~~~wsls~~e~~ 672 (1019)
.+++|+|++ +.|+|+|||.+|++|.-........... ..... ..+.+.+.. ++.+..|+...+.+.
T Consensus 482 s~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdv----l~vsfrPdG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 482 SGLSFSPDG-SLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDV----LAVSFRPDGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred eeeEEcccc-CeEEeccccceEEEEEeeccCceeeeEe-eccce----eEEEEcCCCCeEEEEEecceEEEEEhhhceee
Confidence 999999998 6999999999999984333311111111 00000 111122111 222222332222111
Q ss_pred EEEeecCCCceEEeccc-------cccccCCceEEEEecCCccHHHHHhhcCCCchhhHHHHHHhhheeeeeeeccchhh
Q psy307 673 ALQFSETNNKNYITEKN-------RNEIKNGSVLRLAFSASKTADDILSKLSDKNASLEEKTAAEFYCICIVLLNKTWKE 745 (1019)
Q Consensus 673 al~~sd~~~~~~it~~~-------~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~~~~~e~~~~~i~~~~~~~~~ 745 (1019)
.+-.+.+.....+. .+..+....+.|++|+|+ ..|++|..+.+|.|....-+-++..-.+-.+..++-
T Consensus 556 ---~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG--~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg 630 (893)
T KOG0291|consen 556 ---GSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADG--KCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDG 630 (893)
T ss_pred ---ccccchhhccccccccceeehhhcccCCceEEEEEcCCC--CEEEecCCcccEEEEECchhheeeeEEeccccchhH
Confidence 00000111111111 111246679999999999 899999999999887755444444333334455554
Q ss_pred hh
Q psy307 746 MR 747 (1019)
Q Consensus 746 ~~ 747 (1019)
++
T Consensus 631 ~~ 632 (893)
T KOG0291|consen 631 VL 632 (893)
T ss_pred HH
Confidence 44
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-29 Score=252.85 Aligned_cols=301 Identities=21% Similarity=0.369 Sum_probs=238.2
Q ss_pred ceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC--CcEEEEEe-cccCccEeEEEEcCCCCceeEEEeecCC
Q psy307 327 QVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK--ERRCVRTY-YGHRQAVRDICFNNTGTNFISAIRWFPK 403 (1019)
Q Consensus 327 ~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~--~~~~~~~~-~gh~~~V~~i~fspdg~~~vs~i~~~p~ 403 (1019)
.++.+.||++.|..++|+|..|.+|||||.|..|+||+... .-.|...+ .+|+..|++++|+|.|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g------------ 73 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG------------ 73 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC------------
Confidence 46789999999999999995578999999999999999853 23344333 4799999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEccC-CCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEE
Q psy307 404 SAHLLLSCSMDCRVKLWEVYK-EHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYC 482 (1019)
Q Consensus 404 ~~~~L~sgs~Dg~I~IWDl~~-~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~ 482 (1019)
++|++||.|.++.||.-.. .-+++.++.||...|.|++|+++|++|+++|.|+.|-||.+..+... .
T Consensus 74 --~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEf---------e- 141 (312)
T KOG0645|consen 74 --RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEF---------E- 141 (312)
T ss_pred --cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcE---------E-
Confidence 7999999999999998632 33789999999999999999999999999999999999998643211 1
Q ss_pred EEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEE
Q psy307 483 VKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562 (1019)
Q Consensus 483 v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~ 562 (1019)
...+..+|...|..+.|+|...+|+++|.|++|++|+-.......+..++.+|. ..|.+++
T Consensus 142 -----------------c~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~--~TVW~~~ 202 (312)
T KOG0645|consen 142 -----------------CIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHE--NTVWSLA 202 (312)
T ss_pred -----------------EEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCcc--ceEEEEE
Confidence 112334566778889999999999999999999999877555667789999998 5799999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCC
Q psy307 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVP 642 (1019)
Q Consensus 563 fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ 642 (1019)
|++.|..|++++.|++++||-..+.- -..|...+..+.|. ++ .|+|+|.|+.|+++...+- ...
T Consensus 203 F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~---------~d~ 266 (312)
T KOG0645|consen 203 FDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDS---------PDE 266 (312)
T ss_pred ecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeec-cc--ceEeccCCCEEEEEEecCC---------CCC
Confidence 99999999999999999999865221 12477899999998 44 7999999999987733210 000
Q ss_pred ceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCchh
Q psy307 643 QLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNAS 722 (1019)
Q Consensus 643 ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~ 722 (1019)
+. +-+.. .....|.-.|++++|.|.. ..+|++++.||.++
T Consensus 267 p~---------------------------~~l~~------------~~~~aHe~dVNsV~w~p~~-~~~L~s~~DDG~v~ 306 (312)
T KOG0645|consen 267 PS---------------------------WNLLA------------KKEGAHEVDVNSVQWNPKV-SNRLASGGDDGIVN 306 (312)
T ss_pred ch---------------------------HHHHH------------hhhcccccccceEEEcCCC-CCceeecCCCceEE
Confidence 00 00000 0111455578999999943 47899999999999
Q ss_pred hHHH
Q psy307 723 LEEK 726 (1019)
Q Consensus 723 lw~~ 726 (1019)
+|+.
T Consensus 307 ~W~l 310 (312)
T KOG0645|consen 307 FWEL 310 (312)
T ss_pred EEEe
Confidence 9963
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=272.57 Aligned_cols=251 Identities=23% Similarity=0.434 Sum_probs=225.2
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
.+.+.+.||..+|+.+-|+|. -.++++++.|++|++||. .++++.+.++||.++|.+|.|+..|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~-~tg~~e~~LrGHt~sv~di~~~a~G-------------- 162 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPS-EALVVSASEDATIKVFDT-ETGELERSLRGHTDSVFDISFDASG-------------- 162 (406)
T ss_pred CchhhhhccccceeeeeeccC-ceEEEEecCCceEEEEEc-cchhhhhhhhccccceeEEEEecCc--------------
Confidence 456778899999999999995 789999999999999999 6677899999999999999999998
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKF 485 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~ 485 (1019)
++|++++.|-.+++||.....+++..+.+|...|.+++|-|.|.+++|++.|.+|+.|++.+|-|+.++..+.
T Consensus 163 k~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~------- 235 (406)
T KOG0295|consen 163 KYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHS------- 235 (406)
T ss_pred cEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCch-------
Confidence 7999999999999999987788999999999999999999999999999999999999999999999988654
Q ss_pred ecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcC
Q psy307 486 HPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP 565 (1019)
Q Consensus 486 ~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp 565 (1019)
..+..+..+.||..+++++.|.+|++|-+.++ .++..+.+|. .+|-+++|-|
T Consensus 236 -----------------------ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~---~~k~~lR~hE--h~vEci~wap 287 (406)
T KOG0295|consen 236 -----------------------EWVRMVRVNQDGTIIASCSNDQTLRVWVVATK---QCKAELREHE--HPVECIAWAP 287 (406)
T ss_pred -----------------------HhEEEEEecCCeeEEEecCCCceEEEEEeccc---hhhhhhhccc--cceEEEEecc
Confidence 24556777889999999999999999999887 4556777777 5688888876
Q ss_pred C---------------CCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccc
Q psy307 566 D---------------MSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDAN 629 (1019)
Q Consensus 566 d---------------g~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~ 629 (1019)
. |+++.+++.|++|++||+.+|.++.++.+|...|.+++|+|.| ++|+++..|+++++| |.+
T Consensus 288 ~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~G-kyi~ScaDDktlrvw-dl~ 364 (406)
T KOG0295|consen 288 ESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGG-KYILSCADDKTLRVW-DLK 364 (406)
T ss_pred cccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCC-eEEEEEecCCcEEEE-Eec
Confidence 2 3599999999999999999999999999999999999999988 799999999999765 443
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-31 Score=271.79 Aligned_cols=264 Identities=22% Similarity=0.410 Sum_probs=224.7
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVR 373 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~ 373 (1019)
..|+...+++|..|.+|++|+... ..+...+.||++.|.|+.|.. .+++|||.|.+|+|||+ .+++++.
T Consensus 203 lQYDD~kiVSGlrDnTikiWD~n~-------~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv-~tge~l~ 271 (499)
T KOG0281|consen 203 LQYDDEKIVSGLRDNTIKIWDKNS-------LECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDV-NTGEPLN 271 (499)
T ss_pred EEecchhhhcccccCceEEecccc-------HHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEec-cCCchhh
Confidence 456777889999999999998763 356788999999999999954 59999999999999999 7788999
Q ss_pred EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC--eEEEEEccccccEeEEEEecCCCEE
Q psy307 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH--RCVRTYYGHRQAVRDICFNNTGTNF 451 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~--~~~~~l~~H~~~V~sl~fspdg~~l 451 (1019)
++.+|...|..+.|+. .+++++|.|.+|.+||+.... .+.+.+.||...|+.+.|+ .+++
T Consensus 272 tlihHceaVLhlrf~n----------------g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyI 333 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSN----------------GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYI 333 (499)
T ss_pred HHhhhcceeEEEEEeC----------------CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceE
Confidence 9999999999999986 589999999999999995443 3456678999999999995 5699
Q ss_pred EEEEcCCeEEEEECCCCceEEEEecCC-ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC
Q psy307 452 ISAGYDRYLKLWDTESGECISRFTSRK-VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN 530 (1019)
Q Consensus 452 ~S~s~Dg~I~lWDl~t~~~i~~~~~~~-~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg 530 (1019)
+++|.|++|++|++.++++++++..+. .+.|+.+ .|+++++||.|+
T Consensus 334 VsASgDRTikvW~~st~efvRtl~gHkRGIAClQY---------------------------------r~rlvVSGSSDn 380 (499)
T KOG0281|consen 334 VSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY---------------------------------RDRLVVSGSSDN 380 (499)
T ss_pred EEecCCceEEEEeccceeeehhhhcccccceehhc---------------------------------cCeEEEecCCCc
Confidence 999999999999999999999987653 3444433 688999999999
Q ss_pred eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---------eeeeeeccCCCEE
Q psy307 531 KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK---------LFKKWKAHDGVCI 601 (1019)
Q Consensus 531 ~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~---------~l~~l~~h~~~V~ 601 (1019)
+|++||+..+ .++..+.||. .-|.++.| |.+.+++|+.||+|+|||+.++. ++.++..|.+.|.
T Consensus 381 tIRlwdi~~G---~cLRvLeGHE--eLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVF 453 (499)
T KOG0281|consen 381 TIRLWDIECG---ACLRVLEGHE--ELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVF 453 (499)
T ss_pred eEEEEecccc---HHHHHHhchH--Hhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeE
Confidence 9999999988 5568889998 67999999 67889999999999999998763 3445667999999
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeccc
Q psy307 602 STLWHPHEPSKVVTAGWDAATAKVQDAN 629 (1019)
Q Consensus 602 sl~~sp~~~~~l~s~s~Dg~I~iwwd~~ 629 (1019)
.+.|.. ..+++++.|.+|.+|.-.+
T Consensus 454 rLQFD~---fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 454 RLQFDE---FQIISSSHDDTILIWDFLN 478 (499)
T ss_pred EEeecc---eEEEeccCCCeEEEEEcCC
Confidence 999953 5799999999996664333
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-30 Score=265.79 Aligned_cols=247 Identities=17% Similarity=0.313 Sum_probs=219.9
Q ss_pred CccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCC
Q psy307 324 PKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPK 403 (1019)
Q Consensus 324 p~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~ 403 (1019)
|-++-+.+.||.+.|.|+++.| +...|+||+.|++|+|||+ ..+++..++.||...|..+++|+..
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDl-atg~LkltltGhi~~vr~vavS~rH------------ 205 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDL-ATGQLKLTLTGHIETVRGVAVSKRH------------ 205 (460)
T ss_pred cceehhhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEc-ccCeEEEeecchhheeeeeeecccC------------
Confidence 4466778999999999999999 5899999999999999999 6778889999999999999999988
Q ss_pred CCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEE
Q psy307 404 SAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCV 483 (1019)
Q Consensus 404 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v 483 (1019)
.++++++.|+.|+.||+ ...+.++.+.||-+.|.|++.+|.-..|++|+.|.+++|||+++...+..+.++.
T Consensus 206 --pYlFs~gedk~VKCwDL-e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~----- 277 (460)
T KOG0285|consen 206 --PYLFSAGEDKQVKCWDL-EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT----- 277 (460)
T ss_pred --ceEEEecCCCeeEEEec-hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCC-----
Confidence 59999999999999999 7888999999999999999999999999999999999999999998888777543
Q ss_pred EEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEE
Q psy307 484 KFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDF 563 (1019)
Q Consensus 484 ~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~f 563 (1019)
..|..+.+.|-...+++||.|++|++||++.+. ...++..|. ..+.+++.
T Consensus 278 -------------------------~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk---t~~tlt~hk--ksvral~l 327 (460)
T KOG0285|consen 278 -------------------------NPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK---TMITLTHHK--KSVRALCL 327 (460)
T ss_pred -------------------------CcceeEEeecCCCceEEecCCceEEEeeeccCc---eeEeeeccc--ceeeEEec
Confidence 445556666667789999999999999999884 346777777 66999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 564 SPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 564 spdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+|....+|+++.| .|+-|++..|..+..+.+|.+.|++++...|+ .+++|+..|.+..|
T Consensus 328 hP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fw 386 (460)
T KOG0285|consen 328 HPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFW 386 (460)
T ss_pred CCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc--eEEEcCCceEEEEE
Confidence 9999999999988 49999999999999999999999999999886 78888888877554
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=265.95 Aligned_cols=279 Identities=20% Similarity=0.316 Sum_probs=230.6
Q ss_pred CCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC-CcEEEE-----E---ecc----cCccEeEEEEcC
Q psy307 323 LPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-ERRCVR-----T---YYG----HRQAVRDICFNN 389 (1019)
Q Consensus 323 lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~-~~~~~~-----~---~~g----h~~~V~~i~fsp 389 (1019)
+|...+..+. |+..|.+.+|+|-...++++|+.|.+.++|++.. ...+.. . +.+ ..+.|++++|+.
T Consensus 167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~ 245 (524)
T KOG0273|consen 167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN 245 (524)
T ss_pred ccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC
Confidence 4555566666 9999999999997556999999999999999953 111111 0 111 235799999999
Q ss_pred CCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCc
Q psy307 390 TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGE 469 (1019)
Q Consensus 390 dg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~ 469 (1019)
+| .+|++|+.||.++||+. .+..+.++..|.++|.++.|+.+|.+|++++.|+++.+||..+|.
T Consensus 246 ~G--------------~~LatG~~~G~~riw~~--~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 246 DG--------------TLLATGSEDGEARIWNK--DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred CC--------------CeEEEeecCcEEEEEec--CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce
Confidence 98 79999999999999995 778889999999999999999999999999999999999999999
Q ss_pred eEEEEecCCce-EEEEEec---------CCCeeee--ccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEc
Q psy307 470 CISRFTSRKVA-YCVKFHP---------DEDKQHL--DIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSA 537 (1019)
Q Consensus 470 ~i~~~~~~~~v-~~v~~~p---------~~~~~~~--~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~ 537 (1019)
+.+.+..+..+ ..+.|.. ++...+. +...+.+.... |...|.++.|.|.|.+|+++|.|++++||+.
T Consensus 310 ~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~ 388 (524)
T KOG0273|consen 310 VKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSM 388 (524)
T ss_pred EEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeec
Confidence 99999877666 5566643 3333332 22333444444 8899999999999999999999999999998
Q ss_pred cCcccccceeEEeccccccceEEEEEcCCC---------CEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCC
Q psy307 538 LNRFKLNRKKTFEGHMVAGYACSLDFSPDM---------SYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPH 608 (1019)
Q Consensus 538 ~~~~~~~~~~~l~gh~~~~~V~~v~fspdg---------~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~ 608 (1019)
... .....+.+|. ..|..+.|+|+| ..+++++.|++|++||+..+.++++|..|..+|.+++|+|+
T Consensus 389 ~~~---~~~~~l~~Hs--kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~ 463 (524)
T KOG0273|consen 389 GQS---NSVHDLQAHS--KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN 463 (524)
T ss_pred CCC---cchhhhhhhc--cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC
Confidence 766 4456677776 558899999965 37899999999999999999999999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEE
Q psy307 609 EPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 609 ~~~~l~s~s~Dg~I~iw 625 (1019)
+ +++++|+.||.|.+|
T Consensus 464 g-~ylAsGs~dg~V~iw 479 (524)
T KOG0273|consen 464 G-RYLASGSLDGCVHIW 479 (524)
T ss_pred C-cEEEecCCCCeeEec
Confidence 8 799999999999776
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-28 Score=264.65 Aligned_cols=365 Identities=16% Similarity=0.207 Sum_probs=276.3
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCcc---------------------------------------CCccceeeecc
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCF---------------------------------------LPKTQVHTWEG 333 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~---------------------------------------lp~~~i~~l~g 333 (1019)
.+++.|-++++|...|.|++|+........ -.+.-+..+.|
T Consensus 66 kySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~G 145 (603)
T KOG0318|consen 66 KYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITG 145 (603)
T ss_pred EeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeec
Confidence 456677777888777888888765311100 12344568899
Q ss_pred CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC
Q psy307 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM 413 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~ 413 (1019)
|...|+++.|-|...-.++|||.|++|.+++= ...+-..++..|.+-|.|+.|+||| .++++.+.
T Consensus 146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeG-PPFKFk~s~r~HskFV~~VRysPDG--------------~~Fat~gs 210 (603)
T KOG0318|consen 146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFEG-PPFKFKSSFREHSKFVNCVRYSPDG--------------SRFATAGS 210 (603)
T ss_pred cceeEeeeeccCCCceEEEeccCCCeEEEeeC-CCeeeeecccccccceeeEEECCCC--------------CeEEEecC
Confidence 99999999999977788999999999999985 5556667888999999999999999 69999999
Q ss_pred CCcEEEEEccCCCeEEEEEc---cccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCce----EEEEEe
Q psy307 414 DCRVKLWEVYKEHRCVRTYY---GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVA----YCVKFH 486 (1019)
Q Consensus 414 Dg~I~IWDl~~~~~~~~~l~---~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v----~~v~~~ 486 (1019)
||+|.+||= .++..+..+. +|.+.|.+++|+||++.|+++|.|.+++|||+.++++++++.....+ ..+-|.
T Consensus 211 Dgki~iyDG-ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq 289 (603)
T KOG0318|consen 211 DGKIYIYDG-KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ 289 (603)
T ss_pred CccEEEEcC-CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe
Confidence 999999998 6666777776 89999999999999999999999999999999999999999765432 223333
Q ss_pred c--------CCCeeeeccC-CCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccc--------eeEE
Q psy307 487 P--------DEDKQHLDIP-VDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNR--------KKTF 549 (1019)
Q Consensus 487 p--------~~~~~~~~~~-~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~--------~~~l 549 (1019)
. +|....+... .....+...|...|++++.+|++++|++|+.||.|.-|+...+..-.. +..+
T Consensus 290 kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~ 369 (603)
T KOG0318|consen 290 KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGM 369 (603)
T ss_pred CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEE
Confidence 1 1211111111 113345567889999999999999999999999999999865432100 0000
Q ss_pred --------------------------------------------------------------eccc------cccceEEE
Q psy307 550 --------------------------------------------------------------EGHM------VAGYACSL 561 (1019)
Q Consensus 550 --------------------------------------------------------------~gh~------~~~~V~~v 561 (1019)
..+. ..-...++
T Consensus 370 ~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~v 449 (603)
T KOG0318|consen 370 AASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAV 449 (603)
T ss_pred eecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceE
Confidence 0000 00113578
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCce--eeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccc
Q psy307 562 DFSPDMSYLISGDADGKCYIWDWKTTKL--FKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEK 639 (1019)
Q Consensus 562 ~fspdg~~Lasgs~DG~I~IWDl~t~~~--l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~ 639 (1019)
+++|+++.++.|+.||.|+||.+..+.+ ......|.++|++++++|++ .+|++|...+.+.+| +....
T Consensus 450 Av~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~-~yla~~Da~rkvv~y-d~~s~-------- 519 (603)
T KOG0318|consen 450 AVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDG-AYLAAGDASRKVVLY-DVASR-------- 519 (603)
T ss_pred EEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCC-cEEEEeccCCcEEEE-EcccC--------
Confidence 8999999999999999999999987654 33456799999999999999 699999998888554 32110
Q ss_pred cCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCC
Q psy307 640 QVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDK 719 (1019)
Q Consensus 640 ~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~ 719 (1019)
+. ..++-.+|.+.|+|++|||+. .++++|+-|-
T Consensus 520 --------------------------------~~-------------~~~~w~FHtakI~~~aWsP~n--~~vATGSlDt 552 (603)
T KOG0318|consen 520 --------------------------------EV-------------KTNRWAFHTAKINCVAWSPNN--KLVATGSLDT 552 (603)
T ss_pred --------------------------------ce-------------ecceeeeeeeeEEEEEeCCCc--eEEEeccccc
Confidence 00 111222799999999999999 7999999999
Q ss_pred chhhHH--HHHHh
Q psy307 720 NASLEE--KTAAE 730 (1019)
Q Consensus 720 ~i~lw~--~~~~e 730 (1019)
+|-+|. .++.-
T Consensus 553 ~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 553 NVIIYSVKKPAKH 565 (603)
T ss_pred eEEEEEccChhhh
Confidence 999997 45543
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-29 Score=262.84 Aligned_cols=277 Identities=25% Similarity=0.437 Sum_probs=236.2
Q ss_pred CCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCC--CcEEEEeeCCCeEEEEecCCCc---E
Q psy307 296 YQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKS--AHLLLSCSMDCRVKLWEVYKER---R 370 (1019)
Q Consensus 296 ~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~--g~lLaSgs~Dg~I~IWdl~~~~---~ 370 (1019)
..++.++++++|+.+++|+.. ++.++++.||+++|.+++|...+ ...|+++|.|.++++|..+.+. +
T Consensus 113 ~~~~~IltgsYDg~~riWd~~--------Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~ 184 (423)
T KOG0313|consen 113 GASKWILTGSYDGTSRIWDLK--------GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK 184 (423)
T ss_pred ccCceEEEeecCCeeEEEecC--------CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh
Confidence 347889999999999999876 46789999999999988886532 2369999999999999885443 2
Q ss_pred EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccC------------------------CC
Q psy307 371 CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYK------------------------EH 426 (1019)
Q Consensus 371 ~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~------------------------~~ 426 (1019)
++....||..+|.++...++| ..+++||.|.+|.||+... .+
T Consensus 185 ~~~~~~GHk~~V~sVsv~~sg--------------tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r 250 (423)
T KOG0313|consen 185 ALKVCRGHKRSVDSVSVDSSG--------------TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR 250 (423)
T ss_pred HHhHhcccccceeEEEecCCC--------------CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence 334456999999999999999 6899999999999999311 13
Q ss_pred eEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCC
Q psy307 427 RCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADP 506 (1019)
Q Consensus 427 ~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~ 506 (1019)
.++.++.||..+|.++.|++ ...++++|.|.+|+.||+.++.++.++...+...|+.+
T Consensus 251 ~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~--------------------- 308 (423)
T KOG0313|consen 251 TPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISY--------------------- 308 (423)
T ss_pred CceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeec---------------------
Confidence 46778999999999999997 66899999999999999999999998887776665554
Q ss_pred CCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCC-EEEEEeCCCeEEEEeCC
Q psy307 507 TMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMS-YLISGDADGKCYIWDWK 585 (1019)
Q Consensus 507 ~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~-~Lasgs~DG~I~IWDl~ 585 (1019)
+|..++|++|+.|..|++||.+++..-.....+.||. ++|.++.|+|... .|++|+.||++++||++
T Consensus 309 ----------~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~--nwVssvkwsp~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 309 ----------SPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHK--NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred ----------ccccceeeecCCCCceeecCCCCCCCceeEEeeecch--hhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence 5567899999999999999999876666778899998 7999999999655 58899999999999999
Q ss_pred CCc-eeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccce
Q psy307 586 TTK-LFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANI 630 (1019)
Q Consensus 586 t~~-~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i 630 (1019)
+.+ ++..+.+|...|.++.|... ..+++||.|.+|++.....+
T Consensus 377 S~k~plydI~~h~DKvl~vdW~~~--~~IvSGGaD~~l~i~~~~~~ 420 (423)
T KOG0313|consen 377 STKAPLYDIAGHNDKVLSVDWNEG--GLIVSGGADNKLRIFKGSPI 420 (423)
T ss_pred cCCCcceeeccCCceEEEEeccCC--ceEEeccCcceEEEeccccc
Confidence 988 99999999999999999864 48999999999988755444
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=284.56 Aligned_cols=303 Identities=18% Similarity=0.292 Sum_probs=249.5
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.|.+..-.++++-+.|.|++|+.. -..+++.|.+|.++|..|+|+|. +.+++|||.|-.|+||+. ..++|+
T Consensus 16 sFHP~rPwILtslHsG~IQlWDYR-------M~tli~rFdeHdGpVRgv~FH~~-qplFVSGGDDykIkVWnY-k~rrcl 86 (1202)
T KOG0292|consen 16 SFHPKRPWILTSLHSGVIQLWDYR-------MGTLIDRFDEHDGPVRGVDFHPT-QPLFVSGGDDYKIKVWNY-KTRRCL 86 (1202)
T ss_pred ecCCCCCEEEEeecCceeeeehhh-------hhhHHhhhhccCCccceeeecCC-CCeEEecCCccEEEEEec-ccceeh
Confidence 355566678888899999999765 35689999999999999999995 899999999999999998 788999
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
.++.||-.-|+.+.|++.- .+|+|+|.|.+|+||+. .++.++..+.||...|.|..|+|....++
T Consensus 87 ftL~GHlDYVRt~~FHhey--------------PWIlSASDDQTIrIWNw-qsr~~iavltGHnHYVMcAqFhptEDlIV 151 (1202)
T KOG0292|consen 87 FTLLGHLDYVRTVFFHHEY--------------PWILSASDDQTIRIWNW-QSRKCIAVLTGHNHYVMCAQFHPTEDLIV 151 (1202)
T ss_pred hhhccccceeEEeeccCCC--------------ceEEEccCCCeEEEEec-cCCceEEEEecCceEEEeeccCCccceEE
Confidence 9999999999999999988 58999999999999999 88899999999999999999999999999
Q ss_pred EEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeE
Q psy307 453 SAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKI 532 (1019)
Q Consensus 453 S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I 532 (1019)
|+|-|.+|||||+..-+....-.. .....+.-.+....+.-......+.+.+.|...|+.++|+|.-..|++|+.|..|
T Consensus 152 SaSLDQTVRVWDisGLRkk~~~pg-~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqV 230 (1202)
T KOG0292|consen 152 SASLDQTVRVWDISGLRKKNKAPG-SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQV 230 (1202)
T ss_pred EecccceEEEEeecchhccCCCCC-CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCccee
Confidence 999999999999864322111111 0000011111000111123445788899999999999999999999999999999
Q ss_pred EEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcE
Q psy307 533 LIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSK 612 (1019)
Q Consensus 533 ~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~ 612 (1019)
++|..... +...+.+..||. +.|.++-|+|...+++|.+.|++|+|||+...+.+++++...+..+.++-||.. .+
T Consensus 231 KlWrmnet-KaWEvDtcrgH~--nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~l-NL 306 (1202)
T KOG0292|consen 231 KLWRMNET-KAWEVDTCRGHY--NNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPEL-NL 306 (1202)
T ss_pred eEEEeccc-cceeehhhhccc--CCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCc-ce
Confidence 99998754 335667888998 679999999999999999999999999999999999998888899999999998 35
Q ss_pred EEEEeCCCcEEEE
Q psy307 613 VVTAGWDAATAKV 625 (1019)
Q Consensus 613 l~s~s~Dg~I~iw 625 (1019)
+++| .|+.+.++
T Consensus 307 fAAg-HDsGm~VF 318 (1202)
T KOG0292|consen 307 FAAG-HDSGMIVF 318 (1202)
T ss_pred eeee-cCCceEEE
Confidence 5554 55544444
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-28 Score=274.47 Aligned_cols=401 Identities=17% Similarity=0.212 Sum_probs=287.5
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.++..|-++++|+.|+.|.+|+..+... ...++||.+.|+..-|.. +..+++|.|.|+.|++||+ ..+.|.
T Consensus 114 ~fd~~G~rlaSGskDt~IIvwDlV~E~G-------l~rL~GHkd~iT~~~F~~-~~~~lvS~sKDs~iK~WdL-~tqhCf 184 (888)
T KOG0306|consen 114 KFDKIGTRLASGSKDTDIIVWDLVGEEG-------LFRLRGHKDSITQALFLN-GDSFLVSVSKDSMIKFWDL-ETQHCF 184 (888)
T ss_pred EEcccCceEeecCCCccEEEEEecccee-------eEEeecchHHHhHHhccC-CCeEEEEeccCceEEEEec-ccceee
Confidence 4688999999999999999999876543 678999999999999887 4789999999999999999 677899
Q ss_pred EEecccCccEeEEEEcCCC--------CceeEEEee-------------------------------cCCCCcEEEEEeC
Q psy307 373 RTYYGHRQAVRDICFNNTG--------TNFISAIRW-------------------------------FPKSAHLLLSCSM 413 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg--------~~~vs~i~~-------------------------------~p~~~~~L~sgs~ 413 (1019)
.+...|...|..+++.++- ...+.-+++ .+.+..+++.-+.
T Consensus 185 ~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~ 264 (888)
T KOG0306|consen 185 ETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGA 264 (888)
T ss_pred eEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecc
Confidence 9999999999988887621 000000100 0001112222222
Q ss_pred CC------------------------------------------------------------------------------
Q psy307 414 DC------------------------------------------------------------------------------ 415 (1019)
Q Consensus 414 Dg------------------------------------------------------------------------------ 415 (1019)
|.
T Consensus 265 d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nN 344 (888)
T KOG0306|consen 265 DKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANN 344 (888)
T ss_pred hhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecC
Confidence 22
Q ss_pred cEEEEEccCCCeE--------EEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEec
Q psy307 416 RVKLWEVYKEHRC--------VRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHP 487 (1019)
Q Consensus 416 ~I~IWDl~~~~~~--------~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p 487 (1019)
++.+|.+...... ...+.||...|.+++++.+...++|| ..+.|++|+..+.+|++++... .+.+..|.|
T Consensus 345 tv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~-y~l~~~Fvp 422 (888)
T KOG0306|consen 345 TVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG-YILASKFVP 422 (888)
T ss_pred ceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc-cEEEEEecC
Confidence 2233322110000 12345899999999999887666665 4678999999999999999987 788999999
Q ss_pred CCCeeeeccCCCce-----------eeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCccc--ccceeEEecc--
Q psy307 488 DEDKQHLDIPVDMK-----------YIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFK--LNRKKTFEGH-- 552 (1019)
Q Consensus 488 ~~~~~~~~~~~~~~-----------~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~--~~~~~~l~gh-- 552 (1019)
.+...+++...+.- .....|.+.+.+++.+||++.+++||.|.+|++||..--.. -...+.+.-+
T Consensus 423 gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~ 502 (888)
T KOG0306|consen 423 GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT 502 (888)
T ss_pred CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccc
Confidence 88877775544421 12346788999999999999999999999999999752111 0111111111
Q ss_pred ---ccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccc
Q psy307 553 ---MVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDAN 629 (1019)
Q Consensus 553 ---~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~ 629 (1019)
.....|.|+.+||||++|+.+-.|.+++||-+.+-+..-++-||.-||.|+..+|++ .+++|||.|.+|++ |..+
T Consensus 503 rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DS-klivTgSADKnVKi-WGLd 580 (888)
T KOG0306|consen 503 RTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKI-WGLD 580 (888)
T ss_pred eEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCc-CeEEeccCCCceEE-eccc
Confidence 112568999999999999999999999999999999999999999999999999998 69999999999965 5666
Q ss_pred eeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccc-----cCCceEEEEec
Q psy307 630 IVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEI-----KNGSVLRLAFS 704 (1019)
Q Consensus 630 i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I-----~ng~Vl~LafS 704 (1019)
.+..-....++...++.+. |-+..+......-+...++|....-..| |.+.|.|++.+
T Consensus 581 FGDCHKS~fAHdDSvm~V~-----------------F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~ 643 (888)
T KOG0306|consen 581 FGDCHKSFFAHDDSVMSVQ-----------------FLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVS 643 (888)
T ss_pred cchhhhhhhcccCceeEEE-----------------EcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEc
Confidence 6666555555443333210 1111111111111222334433332223 68899999999
Q ss_pred CCccHHHHHhhcCCCchhhHH
Q psy307 705 ASKTADDILSKLSDKNASLEE 725 (1019)
Q Consensus 705 Pd~~a~~Ilt~~~d~~i~lw~ 725 (1019)
|++ ..+++++.|.+||+|+
T Consensus 644 ~~G--~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 644 PNG--SFVVSSSHDKSIRLWE 662 (888)
T ss_pred CCC--CeEEeccCCceeEeee
Confidence 999 8999999999999998
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-28 Score=271.27 Aligned_cols=387 Identities=17% Similarity=0.264 Sum_probs=288.5
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC-----
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE----- 368 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~----- 368 (1019)
.+++|..++.....|...+-+.. ....+|.++ -+.+|.||+|||+ |.++|.|. .+.+.||.....
T Consensus 63 lSp~g~lllavdE~g~~~lvs~~-------~r~Vlh~f~-fk~~v~~i~fSPn-g~~fav~~-gn~lqiw~~P~~~~~~~ 132 (893)
T KOG0291|consen 63 LSPDGTLLLAVDERGRALLVSLL-------SRSVLHRFN-FKRGVGAIKFSPN-GKFFAVGC-GNLLQIWHAPGEIKNEF 132 (893)
T ss_pred eCCCceEEEEEcCCCcEEEEecc-------cceeeEEEe-ecCccceEEECCC-CcEEEEEe-cceeEEEecCcchhccc
Confidence 46788888888887766665433 122344443 3568999999996 77766654 578999987432
Q ss_pred --cEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe-EEEEEccccccEeEEEEe
Q psy307 369 --RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR-CVRTYYGHRQAVRDICFN 445 (1019)
Q Consensus 369 --~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~-~~~~l~~H~~~V~sl~fs 445 (1019)
....+++.||-..|.+|.|+.|. ++|++||.|-+++||++..... ....+.+|.+.|.++-|.
T Consensus 133 ~pFvl~r~~~g~fddi~si~Ws~DS--------------r~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~ 198 (893)
T KOG0291|consen 133 NPFVLHRTYLGHFDDITSIDWSDDS--------------RLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFG 198 (893)
T ss_pred CcceEeeeecCCccceeEEEeccCC--------------ceEEeccccceEEEEEeccccccceEeccCCCcceEEEEec
Confidence 24567899999999999999998 7999999999999999954443 467789999999999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCC-----------------------Cce-----EE----E--Ee-cCCceEEEEEecCCC
Q psy307 446 NTGTNFISAGYDRYLKLWDTES-----------------------GEC-----IS----R--FT-SRKVAYCVKFHPDED 490 (1019)
Q Consensus 446 pdg~~l~S~s~Dg~I~lWDl~t-----------------------~~~-----i~----~--~~-~~~~v~~v~~~p~~~ 490 (1019)
.+...+++.+.||.+.+|-... ++. .. . +. ....+.+.+||+...
T Consensus 199 ~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~ 278 (893)
T KOG0291|consen 199 ANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTN 278 (893)
T ss_pred cCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCce
Confidence 9999999999999999997751 111 00 0 11 225678889999877
Q ss_pred eeeeccCCCceeee-----------CCCCCcccEEEEcCCCCEEEEEecC-CeEEEEEccCcccccceeEEeccccccce
Q psy307 491 KQHLDIPVDMKYIA-----------DPTMHSMPAVTSSPNNKWLACQSMD-NKILIFSALNRFKLNRKKTFEGHMVAGYA 558 (1019)
Q Consensus 491 ~~~~~~~~~~~~i~-----------~~~~~~i~~v~~spdg~~Lasgs~D-g~I~iwd~~~~~~~~~~~~l~gh~~~~~V 558 (1019)
.++++...+...+. ......|..++|+..|.+||.|+.. |++.||+.... .-+....||. ..+
T Consensus 279 ~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE---sYVlKQQgH~--~~i 353 (893)
T KOG0291|consen 279 LLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE---SYVLKQQGHS--DRI 353 (893)
T ss_pred EEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc---ceeeeccccc--cce
Confidence 77765554443222 2344678899999999999999865 89999999865 2345566776 669
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeecc
Q psy307 559 CSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEME 638 (1019)
Q Consensus 559 ~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~ 638 (1019)
+++++||||+++|+|+.||+|+|||..+|-++.++..|...|+.+.|+..+ ..+++.|.||+|+.|.-.++ +....+.
T Consensus 354 ~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRY-rNfRTft 431 (893)
T KOG0291|consen 354 TSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRY-RNFRTFT 431 (893)
T ss_pred eeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeeccc-ceeeeec
Confidence 999999999999999999999999999999999999999999999999998 69999999999977644433 3333333
Q ss_pred ccCCceeecccccccchhhhhhhcccccCC-CceeEEEeecCCCceEEeccccccc-----cCCceEEEEecCCccHHHH
Q psy307 639 KQVPQLYQFNQTLTLSSIIQEICSGWSLSD-SEQYALQFSETNNKNYITEKNRNEI-----KNGSVLRLAFSASKTADDI 712 (1019)
Q Consensus 639 ~~v~ql~~l~~~~~LSs~~~~~~~~wsls~-~e~~al~~sd~~~~~~it~~~~~~I-----~ng~Vl~LafSPd~~a~~I 712 (1019)
.+.+. .++ |.+ .++ ++.....--+.-+..+|..+.++.+ |-|||.+|+|+|.+ ..|
T Consensus 432 ~P~p~--------Qfs------cva--vD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~--~~L 493 (893)
T KOG0291|consen 432 SPEPI--------QFS------CVA--VDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG--SLL 493 (893)
T ss_pred CCCce--------eee------EEE--EcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc--CeE
Confidence 22221 111 111 111 1211111112234567777777766 79999999999999 699
Q ss_pred HhhcCCCchhhHHHHHH
Q psy307 713 LSKLSDKNASLEEKTAA 729 (1019)
Q Consensus 713 lt~~~d~~i~lw~~~~~ 729 (1019)
++++.|.+||+|+.|..
T Consensus 494 aS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 494 ASGSWDKTVRIWDIFSS 510 (893)
T ss_pred EeccccceEEEEEeecc
Confidence 99999999999997765
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-28 Score=274.38 Aligned_cols=387 Identities=19% Similarity=0.282 Sum_probs=280.3
Q ss_pred CCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEe
Q psy307 296 YQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTY 375 (1019)
Q Consensus 296 ~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~ 375 (1019)
.+.-.++.|..||.|++|+.... ....++.||+.+|+++.|... |..|+|||.|+.|.+||+ -+..-+..+
T Consensus 75 ~d~l~lAVGYaDGsVqif~~~s~-------~~~~tfngHK~AVt~l~fd~~-G~rlaSGskDt~IIvwDl-V~E~Gl~rL 145 (888)
T KOG0306|consen 75 DDILLLAVGYADGSVQIFSLESE-------EILITFNGHKAAVTTLKFDKI-GTRLASGSKDTDIIVWDL-VGEEGLFRL 145 (888)
T ss_pred CCcceEEEEecCceEEeeccCCC-------ceeeeecccccceEEEEEccc-CceEeecCCCccEEEEEe-ccceeeEEe
Confidence 44556789999999999987632 457789999999999999995 899999999999999999 555667789
Q ss_pred cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEE
Q psy307 376 YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG 455 (1019)
Q Consensus 376 ~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s 455 (1019)
.||...|+..-|..+. +++++.|.|+.|++||+ ....|..+.-.|.+.|+++++.+ +.+++++
T Consensus 146 ~GHkd~iT~~~F~~~~--------------~~lvS~sKDs~iK~WdL-~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~ 208 (888)
T KOG0306|consen 146 RGHKDSITQALFLNGD--------------SFLVSVSKDSMIKFWDL-ETQHCFETHVDHRGEIWALVLDE--KLLVTAG 208 (888)
T ss_pred ecchHHHhHHhccCCC--------------eEEEEeccCceEEEEec-ccceeeeEEecccceEEEEEEec--ceEEEEe
Confidence 9999999999888744 69999999999999999 88899999999999999999987 7899999
Q ss_pred cCCeEEEEECCCC-------ce-----EEEEe--cCCce-----------------------------------------
Q psy307 456 YDRYLKLWDTESG-------EC-----ISRFT--SRKVA----------------------------------------- 480 (1019)
Q Consensus 456 ~Dg~I~lWDl~t~-------~~-----i~~~~--~~~~v----------------------------------------- 480 (1019)
.|+.+++|++... .. ..++. +....
T Consensus 209 ~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k 288 (888)
T KOG0306|consen 209 TDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLK 288 (888)
T ss_pred cCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHH
Confidence 9999999998210 00 01111 01111
Q ss_pred -----------------------------------EEEEEecCCCee--ee----------ccCC--C--------ceee
Q psy307 481 -----------------------------------YCVKFHPDEDKQ--HL----------DIPV--D--------MKYI 503 (1019)
Q Consensus 481 -----------------------------------~~v~~~p~~~~~--~~----------~~~~--~--------~~~i 503 (1019)
.++.+.|++... .+ ..+. . ....
T Consensus 289 ~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~ 368 (888)
T KOG0306|consen 289 RAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIE 368 (888)
T ss_pred HhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceee
Confidence 112222221111 00 0000 0 0112
Q ss_pred eCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy307 504 ADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWD 583 (1019)
Q Consensus 504 ~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWD 583 (1019)
...|...|.+++++.+...+++|+ .+.|.+|+..+. .++.++.. +++.+..|.|.++++++|...|.+.+||
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~---kciRTi~~----~y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTL---KCIRTITC----GYILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred eccchhheeEEEeecCceeeeecC-CCcEEEEEccCc---ceeEEecc----ccEEEEEecCCCceEEEeccCCceEEEE
Confidence 234556688999998887777665 789999999876 45566644 5799999999999999999999999999
Q ss_pred CCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcc
Q psy307 584 WKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSG 663 (1019)
Q Consensus 584 l~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~ 663 (1019)
+.+..++.++++|++.|++++.+|++ ..++|||.|.+|+.| +.....- .++...+.+++.+...+---.+-.|
T Consensus 441 laS~~l~Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfW-df~l~~~---~~gt~~k~lsl~~~rtLel~ddvL~-- 513 (888)
T KOG0306|consen 441 LASASLVETIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFW-DFKLVVS---VPGTQKKVLSLKHTRTLELEDDVLC-- 513 (888)
T ss_pred eehhhhhhhhhccccceeeeeecCCC-CceEEecCCcEEEEE-eEEEEec---cCcccceeeeeccceEEeccccEEE--
Confidence 99999999999999999999999998 589999999999655 5443322 3334444455555444432222222
Q ss_pred cccC-CCceeEEEeecCCCceEEecccccc---c--cCCceEEEEecCCccHHHHHhhcCCCchhhHHH
Q psy307 664 WSLS-DSEQYALQFSETNNKNYITEKNRNE---I--KNGSVLRLAFSASKTADDILSKLSDKNASLEEK 726 (1019)
Q Consensus 664 wsls-~~e~~al~~sd~~~~~~it~~~~~~---I--~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~~ 726 (1019)
..++ ++...++..-++ ...+.....-.. + |.=||+|+..|||. +.|+||+.|++|++|-+
T Consensus 514 v~~Spdgk~LaVsLLdn-TVkVyflDtlKFflsLYGHkLPV~smDIS~DS--klivTgSADKnVKiWGL 579 (888)
T KOG0306|consen 514 VSVSPDGKLLAVSLLDN-TVKVYFLDTLKFFLSLYGHKLPVLSMDISPDS--KLIVTGSADKNVKIWGL 579 (888)
T ss_pred EEEcCCCcEEEEEeccC-eEEEEEecceeeeeeecccccceeEEeccCCc--CeEEeccCCCceEEecc
Confidence 2333 333333333322 222222111111 1 78899999999999 99999999999999973
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-28 Score=254.51 Aligned_cols=299 Identities=17% Similarity=0.225 Sum_probs=232.0
Q ss_pred CCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEE
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRT 374 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~ 374 (1019)
++..+..++|+.|..--||+.... ..+..+.||+..|+|+.|+.+ +.+||||+.+|.|+||...++ .....
T Consensus 73 ~P~~~l~aTGGgDD~AflW~~~~g-------e~~~eltgHKDSVt~~~Fshd-gtlLATGdmsG~v~v~~~stg-~~~~~ 143 (399)
T KOG0296|consen 73 HPNNNLVATGGGDDLAFLWDISTG-------EFAGELTGHKDSVTCCSFSHD-GTLLATGDMSGKVLVFKVSTG-GEQWK 143 (399)
T ss_pred CCCCceEEecCCCceEEEEEccCC-------cceeEecCCCCceEEEEEccC-ceEEEecCCCccEEEEEcccC-ceEEE
Confidence 457888999999999999987643 357889999999999999996 899999999999999999544 44444
Q ss_pred ecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEE
Q psy307 375 YYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISA 454 (1019)
Q Consensus 375 ~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~ 454 (1019)
+...-..+.=+.|+|.+ .+|+.|+.||.+.+|.+. .+...+.+.||+.++++-.|.|+|++++++
T Consensus 144 ~~~e~~dieWl~WHp~a--------------~illAG~~DGsvWmw~ip-~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tg 208 (399)
T KOG0296|consen 144 LDQEVEDIEWLKWHPRA--------------HILLAGSTDGSVWMWQIP-SQALCKVMSGHNSPCTCGEFIPDGKRILTG 208 (399)
T ss_pred eecccCceEEEEecccc--------------cEEEeecCCCcEEEEECC-CcceeeEecCCCCCcccccccCCCceEEEE
Confidence 44333444445555544 799999999999999994 447888999999999999999999999999
Q ss_pred EcCCeEEEEECCCCceEEEEecC--CceEEEEEecCCCee----------eeccCCC---------ceeeeCCCC---Cc
Q psy307 455 GYDRYLKLWDTESGECISRFTSR--KVAYCVKFHPDEDKQ----------HLDIPVD---------MKYIADPTM---HS 510 (1019)
Q Consensus 455 s~Dg~I~lWDl~t~~~i~~~~~~--~~v~~v~~~p~~~~~----------~~~~~~~---------~~~i~~~~~---~~ 510 (1019)
..||+|++||..+++++..+... ....++.++..+... .+..... ...+...+. .+
T Consensus 209 y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 209 YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 99999999999999998887632 223334333322211 1111100 111111122 33
Q ss_pred ccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q psy307 511 MPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLF 590 (1019)
Q Consensus 511 i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l 590 (1019)
|.++.++..-.+.|+|+.||+|.|||+... ..+..-.|. ..|+.+.|-+ ..+|++++.+|.|++||.++|+++
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~----~~R~~c~he--~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAAS----TLRHICEHE--DGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK 361 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccc----hhheeccCC--CceEEEEEcC-cchheeeccCceEEeeeccccceE
Confidence 445556666788999999999999999764 223333444 5599999998 789999999999999999999999
Q ss_pred eeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 591 KKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 591 ~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.++.+|...|.+++.+|+. ++++|+|.|++.+++
T Consensus 362 ~~y~GH~~~Il~f~ls~~~-~~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 362 FTYTGHQMGILDFALSPQK-RLVVTVSDDNTALVF 395 (399)
T ss_pred EEEecCchheeEEEEcCCC-cEEEEecCCCeEEEE
Confidence 9999999999999999998 799999999998776
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=257.17 Aligned_cols=273 Identities=21% Similarity=0.368 Sum_probs=234.9
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
+.++....|++++.|.++++|+.. .+++..++.||...|..+++|+. ..+|++++.|+.|+.||+ ...+.+
T Consensus 158 avdP~n~wf~tgs~DrtikIwDla-------tg~LkltltGhi~~vr~vavS~r-HpYlFs~gedk~VKCwDL-e~nkvI 228 (460)
T KOG0285|consen 158 AVDPGNEWFATGSADRTIKIWDLA-------TGQLKLTLTGHIETVRGVAVSKR-HPYLFSAGEDKQVKCWDL-EYNKVI 228 (460)
T ss_pred eeCCCceeEEecCCCceeEEEEcc-------cCeEEEeecchhheeeeeeeccc-CceEEEecCCCeeEEEec-hhhhhH
Confidence 356778889999999999999987 45778899999999999999995 789999999999999999 566889
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
+.|.||-..|.|++.+|.- ..|++|+.|.+++|||+ .....+..+.||..+|.++.+.|....++
T Consensus 229 R~YhGHlS~V~~L~lhPTl--------------dvl~t~grDst~RvWDi-Rtr~~V~~l~GH~~~V~~V~~~~~dpqvi 293 (460)
T KOG0285|consen 229 RHYHGHLSGVYCLDLHPTL--------------DVLVTGGRDSTIRVWDI-RTRASVHVLSGHTNPVASVMCQPTDPQVI 293 (460)
T ss_pred HHhccccceeEEEeccccc--------------eeEEecCCcceEEEeee-cccceEEEecCCCCcceeEEeecCCCceE
Confidence 9999999999999999977 69999999999999999 67778899999999999999999889999
Q ss_pred EEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeE
Q psy307 453 SAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKI 532 (1019)
Q Consensus 453 S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I 532 (1019)
+||.|++|++||++.|+...++..++ ..+.+++.+|....+|+++.| .|
T Consensus 294 t~S~D~tvrlWDl~agkt~~tlt~hk------------------------------ksvral~lhP~e~~fASas~d-ni 342 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKTMITLTHHK------------------------------KSVRALCLHPKENLFASASPD-NI 342 (460)
T ss_pred EecCCceEEEeeeccCceeEeeeccc------------------------------ceeeEEecCCchhhhhccCCc-cc
Confidence 99999999999999998877776543 456667778888888888765 68
Q ss_pred EEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec--------cCCCEEEEE
Q psy307 533 LIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA--------HDGVCISTL 604 (1019)
Q Consensus 533 ~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~--------h~~~V~sl~ 604 (1019)
+.|++-.+. ....+.+|. +.+++++...|| ++++|+..|.|.+||+++|...+.... ....|.+.+
T Consensus 343 k~w~~p~g~---f~~nlsgh~--~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~ 416 (460)
T KOG0285|consen 343 KQWKLPEGE---FLQNLSGHN--AIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASC 416 (460)
T ss_pred eeccCCccc---hhhcccccc--ceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEe
Confidence 999998773 345688887 678899988776 688899999999999999977665521 234688899
Q ss_pred EcCCCCcEEEEEeCCCcEEEEec
Q psy307 605 WHPHEPSKVVTAGWDAATAKVQD 627 (1019)
Q Consensus 605 ~sp~~~~~l~s~s~Dg~I~iwwd 627 (1019)
|...+ ..|+||..|.+|++|-.
T Consensus 417 fDktg-~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 417 FDKTG-SRLITGEADKTIKMYKE 438 (460)
T ss_pred ecccC-ceEEeccCCcceEEEec
Confidence 99888 69999999999988743
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-28 Score=241.40 Aligned_cols=284 Identities=22% Similarity=0.364 Sum_probs=240.5
Q ss_pred cCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeec
Q psy307 322 FLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 322 ~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
.+|.+..+.+.+|.++|.++.|+-+ |++.++++.|.+|++|+. ..+.+++++.||...|.+++.+.|.
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~d-GnY~ltcGsdrtvrLWNp-~rg~liktYsghG~EVlD~~~s~Dn---------- 71 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVD-GNYCLTCGSDRTVRLWNP-LRGALIKTYSGHGHEVLDAALSSDN---------- 71 (307)
T ss_pred cCcchhceeecccccceEEEEEccC-CCEEEEcCCCceEEeecc-cccceeeeecCCCceeeeccccccc----------
Confidence 3577788999999999999999995 899999999999999999 6778999999999999999999888
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCC--ceEEEEec-CC
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESG--ECISRFTS-RK 478 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~--~~i~~~~~-~~ 478 (1019)
..+++|+.|..|.+||+ .+++..+.+.+|.+.|+.+.|+.+...+++||.|.++++||.++. ++++.+.. ..
T Consensus 72 ----skf~s~GgDk~v~vwDV-~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D 146 (307)
T KOG0316|consen 72 ----SKFASCGGDKAVQVWDV-NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD 146 (307)
T ss_pred ----cccccCCCCceEEEEEc-ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC
Confidence 57999999999999999 889999999999999999999999999999999999999999865 56666643 34
Q ss_pred ceEEEEE--------ecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEe
Q psy307 479 VAYCVKF--------HPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFE 550 (1019)
Q Consensus 479 ~v~~v~~--------~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~ 550 (1019)
.+.++.. +-||....+++..+ ....+.-.++|++++++++++..++++.|+++++.|-.++ +.++.++
T Consensus 147 ~V~Si~v~~heIvaGS~DGtvRtydiR~G-~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---klL~sYk 222 (307)
T KOG0316|consen 147 GVSSIDVAEHEIVAGSVDGTVRTYDIRKG-TLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG---KLLKSYK 222 (307)
T ss_pred ceeEEEecccEEEeeccCCcEEEEEeecc-eeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchh---HHHHHhc
Confidence 4555444 34555555544432 2344556789999999999999999999999999999888 5568899
Q ss_pred ccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCC-EEEEEEcCCCCcEEEEEeCCCcEEEEecc
Q psy307 551 GHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGV-CISTLWHPHEPSKVVTAGWDAATAKVQDA 628 (1019)
Q Consensus 551 gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~-V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~ 628 (1019)
||.+..+-..++++....++++|+.||.|++||+.....+..+..|..+ |.++.++|....+ +++.. +.+..|...
T Consensus 223 Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f-~~A~~-~~~~~~~~~ 299 (307)
T KOG0316|consen 223 GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDF-ITATG-HGDLFWYQE 299 (307)
T ss_pred ccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccce-eEecC-Cceeceeeh
Confidence 9998888888899988899999999999999999999999999999887 8999999998644 44433 345456443
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=244.12 Aligned_cols=275 Identities=21% Similarity=0.330 Sum_probs=223.7
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR 427 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~ 427 (1019)
.-+|+|+|.|.+||+|.. ..+.|.++++...+.|+.+.+.|++ +.|+++ ....|++||++....
T Consensus 10 ~viLvsA~YDhTIRfWqa-~tG~C~rTiqh~dsqVNrLeiTpdk--------------~~LAaa-~~qhvRlyD~~S~np 73 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQA-LTGICSRTIQHPDSQVNRLEITPDK--------------KDLAAA-GNQHVRLYDLNSNNP 73 (311)
T ss_pred ceEEEeccCcceeeeeeh-hcCeEEEEEecCccceeeEEEcCCc--------------chhhhc-cCCeeEEEEccCCCC
Confidence 468999999999999999 7789999999888999999999998 455554 456899999977665
Q ss_pred -EEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCC
Q psy307 428 -CVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADP 506 (1019)
Q Consensus 428 -~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~ 506 (1019)
++.++.+|+..|+++.|..+|+++++||.||+++|||++...+.+.+....
T Consensus 74 ~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~s---------------------------- 125 (311)
T KOG0315|consen 74 NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNS---------------------------- 125 (311)
T ss_pred CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCC----------------------------
Confidence 899999999999999999999999999999999999999877666665543
Q ss_pred CCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy307 507 TMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKT 586 (1019)
Q Consensus 507 ~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t 586 (1019)
+|+++.++|+...|++|..+|.|++||+...... ..+.. .....|.++...|||++|+.+...|++++|++-+
T Consensus 126 ---pVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~---~~liP-e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 126 ---PVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT---HELIP-EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred ---CcceEEecCCcceEEeecCCCcEEEEEccCCccc---cccCC-CCCcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 4566667777788999999999999999875222 11211 1236699999999999999999999999999866
Q ss_pred C------ceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhh
Q psy307 587 T------KLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEI 660 (1019)
Q Consensus 587 ~------~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~ 660 (1019)
. +++.++++|.+.+..+.+||++ .+|+++|.|.++++|-..+..+.
T Consensus 199 ~~~~s~l~P~~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iwn~~~~~kl--------------------------- 250 (311)
T KOG0315|consen 199 HQTASELEPVHKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIWNTDDFFKL--------------------------- 250 (311)
T ss_pred CCccccceEhhheecccceEEEEEECCCC-cEEEeecCCceEEEEecCCceee---------------------------
Confidence 4 4577889999999999999998 69999999999988732211000
Q ss_pred hcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCchhhHHHHHHh
Q psy307 661 CSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNASLEEKTAAE 730 (1019)
Q Consensus 661 ~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~~~~~e 730 (1019)
.++. . -|++.|.+.+||-|+ +.|+++++|+.++||+..+.+
T Consensus 251 ------------e~~l-~--------------gh~rWvWdc~FS~dg--~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 251 ------------ELVL-T--------------GHQRWVWDCAFSADG--EYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred ------------EEEe-e--------------cCCceEEeeeeccCc--cEEEecCCCCceeecccccCc
Confidence 0000 1 244567779999999 899999999999999965554
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=277.38 Aligned_cols=277 Identities=25% Similarity=0.335 Sum_probs=236.0
Q ss_pred CCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC---cEEE
Q psy307 296 YQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE---RRCV 372 (1019)
Q Consensus 296 ~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~---~~~~ 372 (1019)
+..+.++.+.+...+++++...+. | ..+.||+..|.++.... +|.+|+|||.|.++++|.++++ ..++
T Consensus 334 ~e~~~laVATNs~~lr~y~~~~~~-c-------~ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~ 404 (775)
T KOG0319|consen 334 PEESHLAVATNSPELRLYTLPTSY-C-------QIIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCV 404 (775)
T ss_pred CccceEEEEeCCCceEEEecCCCc-e-------EEEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhh
Confidence 344788899999999999655433 2 27899999999999544 3689999999999999987332 2355
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC--e--EEE----EEccccccEeEEEE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH--R--CVR----TYYGHRQAVRDICF 444 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~--~--~~~----~l~~H~~~V~sl~f 444 (1019)
....||...|.+++++..+. .+|+++|.|+++++|++.... . ... +...|...|+|+++
T Consensus 405 a~~~gH~~svgava~~~~~a-------------sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai 471 (775)
T KOG0319|consen 405 AQANGHTNSVGAVAGSKLGA-------------SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI 471 (775)
T ss_pred hhhcccccccceeeecccCc-------------cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe
Confidence 66789999999999977664 799999999999999996521 1 111 23579999999999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEE
Q psy307 445 NNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLA 524 (1019)
Q Consensus 445 spdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~La 524 (1019)
+|+.+.|+|||.|++.+||+++......++.+|. ..+.++.|+|..+.++
T Consensus 472 a~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~------------------------------RGvw~V~Fs~~dq~la 521 (775)
T KOG0319|consen 472 APNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHT------------------------------RGVWCVSFSKNDQLLA 521 (775)
T ss_pred cCCCceEEecccccceeeecccCceEEEEeeCCc------------------------------cceEEEEeccccceeE
Confidence 9999999999999999999999888888887653 4455666677889999
Q ss_pred EEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEE
Q psy307 525 CQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTL 604 (1019)
Q Consensus 525 sgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~ 604 (1019)
++|.|++|+||.+.+. .+.+++.||. ..|..+.|-.+|+.|+|++.||.|+||+++++.++.++.+|...|++++
T Consensus 522 T~SgD~TvKIW~is~f---SClkT~eGH~--~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~ 596 (775)
T KOG0319|consen 522 TCSGDKTVKIWSISTF---SCLKTFEGHT--SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALS 596 (775)
T ss_pred eccCCceEEEEEeccc---eeeeeecCcc--ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEe
Confidence 9999999999999987 6779999998 6699999999999999999999999999999999999999999999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeccce
Q psy307 605 WHPHEPSKVVTAGWDAATAKVQDANI 630 (1019)
Q Consensus 605 ~sp~~~~~l~s~s~Dg~I~iwwd~~i 630 (1019)
-+|.+ .+++|||.||.|.+|.|..-
T Consensus 597 ~~~~~-~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 597 VSPLL-DMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred ecCcc-ceeEecCCCeEEEEeecCcH
Confidence 99998 49999999999999877654
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-28 Score=282.82 Aligned_cols=251 Identities=24% Similarity=0.459 Sum_probs=216.5
Q ss_pred eeeeccC-CCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 328 VHTWEGH-TKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 328 i~~l~gH-~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
..++.+| ...|+++.|+++ |..+++++.|+.|++|+..... ..++.+.+|...|.+++|+|++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~-g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~-------------- 215 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPD-GRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDG-------------- 215 (456)
T ss_pred eeeecccccCceEEEEEcCC-CCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCC--------------
Confidence 5566555 889999999996 6779999999999999994333 2677789999999999999999
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKF 485 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~ 485 (1019)
.++++|+.|++|+|||+...+.+++++.+|...|++++|+|+|+.+++|+.|++|+|||+++++++..+..+.
T Consensus 216 ~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs------- 288 (456)
T KOG0266|consen 216 SYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS------- 288 (456)
T ss_pred cEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccC-------
Confidence 6999999999999999977779999999999999999999999999999999999999999999988887643
Q ss_pred ecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcC
Q psy307 486 HPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP 565 (1019)
Q Consensus 486 ~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp 565 (1019)
..|.+++|+++|.+|++++.||.|++||+.++... +...+.++.....++++.|+|
T Consensus 289 -----------------------~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~fsp 344 (456)
T KOG0266|consen 289 -----------------------DGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-CLKLLSGAENSAPVTSVQFSP 344 (456)
T ss_pred -----------------------CceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-eeecccCCCCCCceeEEEECC
Confidence 56777888899999999999999999999987432 345666665333689999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCE---EEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 566 DMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVC---ISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 566 dg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V---~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+|.++++++.|+.+++||+..+..+..+.+|...+ .+...++.+ .++++|+.|+.|.+|
T Consensus 345 ~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~ 406 (456)
T KOG0266|consen 345 NGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVW 406 (456)
T ss_pred CCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCC-CeEEEEeCCceEEEE
Confidence 99999999999999999999999999999998753 333445555 799999999999776
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-29 Score=268.06 Aligned_cols=294 Identities=27% Similarity=0.424 Sum_probs=230.9
Q ss_pred CcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecC
Q psy307 368 ERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT 447 (1019)
Q Consensus 368 ~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspd 447 (1019)
..+.+.++.||+..|+++.|.|. ..++|++|+.|+.|+||++...+.+++++.+|..+|.+++|+++
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~-------------~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~ 269 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPK-------------KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNC 269 (503)
T ss_pred cHhheeeccCCccccchhhhccc-------------eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcccc
Confidence 34667889999999988877772 23899999999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEe
Q psy307 448 GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQS 527 (1019)
Q Consensus 448 g~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs 527 (1019)
|..|+|+|.|++|++||+++|+++..+..+..+.|+.|+|++ .+.+++|+
T Consensus 270 g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~------------------------------~n~fl~G~ 319 (503)
T KOG0282|consen 270 GTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDN------------------------------QNIFLVGG 319 (503)
T ss_pred CCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCC------------------------------CcEEEEec
Confidence 999999999999999999999999999999999998888773 37899999
Q ss_pred cCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec-cCCCEEEEEEc
Q psy307 528 MDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA-HDGVCISTLWH 606 (1019)
Q Consensus 528 ~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~-h~~~V~sl~~s 606 (1019)
.|+.|+.||++++. .++.+..|. +.|..+.|-++|+++++.+.|+.++||++..+-+++.+.. +.-.+.++..+
T Consensus 320 sd~ki~~wDiRs~k---vvqeYd~hL--g~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~ 394 (503)
T KOG0282|consen 320 SDKKIRQWDIRSGK---VVQEYDRHL--GAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLH 394 (503)
T ss_pred CCCcEEEEeccchH---HHHHHHhhh--hheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecC
Confidence 99999999999984 456666776 7799999999999999999999999999999877665432 22245688889
Q ss_pred CCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhc-ccccCCCceeEEEeecCCCceEE
Q psy307 607 PHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICS-GWSLSDSEQYALQFSETNNKNYI 685 (1019)
Q Consensus 607 p~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~-~wsls~~e~~al~~sd~~~~~~i 685 (1019)
|.+ .++++=+.|+.|.++......+. +....+......+|. ...++++..+++.-+.++...+|
T Consensus 395 P~~-~~~~aQs~dN~i~ifs~~~~~r~--------------nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~w 459 (503)
T KOG0282|consen 395 PNG-KWFAAQSMDNYIAIFSTVPPFRL--------------NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFW 459 (503)
T ss_pred CCC-CeehhhccCceEEEEeccccccc--------------CHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEe
Confidence 998 58999999999988743322221 111112111111111 12344444455555555555555
Q ss_pred eccccccc-----cCCceEEEEecCCccHHHHHhhcCCCchhhHH
Q psy307 686 TEKNRNEI-----KNGSVLRLAFSASKTADDILSKLSDKNASLEE 725 (1019)
Q Consensus 686 t~~~~~~I-----~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~ 725 (1019)
..+....+ |++++..+.|+|-.+ .-+++++.+|.|++|+
T Consensus 460 dwkt~kl~~~lkah~~~ci~v~wHP~e~-Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 460 DWKTTKLVSKLKAHDQPCIGVDWHPVEP-SKVATCGWDGLIKIWD 503 (503)
T ss_pred echhhhhhhccccCCcceEEEEecCCCc-ceeEecccCceeEecC
Confidence 55544433 689999999999985 5589999999999995
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=252.97 Aligned_cols=275 Identities=27% Similarity=0.454 Sum_probs=231.2
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
++++++|.++|++++|+|+ +.+|++++.||.|++|++. .......+.+|...+..+.|++++ ++
T Consensus 2 ~~~~~~h~~~i~~~~~~~~-~~~l~~~~~~g~i~i~~~~-~~~~~~~~~~~~~~i~~~~~~~~~--------------~~ 65 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLE-TGELLRTLKGHTGPVRDVAASADG--------------TY 65 (289)
T ss_pred chHhcccCCCEEEEEEcCC-CCEEEEeecCcEEEEEEee-CCCcEEEEecCCcceeEEEECCCC--------------CE
Confidence 4578899999999999996 7899999999999999994 445677788899999999999987 68
Q ss_pred EEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEec-CCceEEEEEe
Q psy307 408 LLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTS-RKVAYCVKFH 486 (1019)
Q Consensus 408 L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~-~~~v~~v~~~ 486 (1019)
+++++.||.|++||+. .......+..|...|.++.|+++++.+++++.|+.|.+||+++++....+.. ...+.++.|+
T Consensus 66 l~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 144 (289)
T cd00200 66 LASGSSDKTIRLWDLE-TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS 144 (289)
T ss_pred EEEEcCCCeEEEEEcC-cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEc
Confidence 9999999999999994 4567777889999999999999988888888899999999999888888874 4578999999
Q ss_pred cCCCeeeeccCCC-----------ceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccc
Q psy307 487 PDEDKQHLDIPVD-----------MKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVA 555 (1019)
Q Consensus 487 p~~~~~~~~~~~~-----------~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~ 555 (1019)
|++.......... .......+...+.++.++|+++.+++++.||.|++||+..+. ....+..|.
T Consensus 145 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---~~~~~~~~~-- 219 (289)
T cd00200 145 PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK---CLGTLRGHE-- 219 (289)
T ss_pred CcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc---eecchhhcC--
Confidence 9765544432111 111222445578999999999999999999999999998753 334454555
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 556 GYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 556 ~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
..+.++.|+|++.++++++.||.|++||+.+++.+..+..|...|.+++|+|++ ..+++++.||.+++|
T Consensus 220 ~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iw 288 (289)
T cd00200 220 NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDG-KRLASGSADGTIRIW 288 (289)
T ss_pred CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCC-CEEEEecCCCeEEec
Confidence 579999999999999999889999999999999999999999999999999987 689999999999776
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-27 Score=238.04 Aligned_cols=269 Identities=22% Similarity=0.398 Sum_probs=219.8
Q ss_pred CCeeeeCCCCCceeeecCCCCCCccCCccceeee-ccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecC-CCcEEEEEe
Q psy307 298 GRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTW-EGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVY-KERRCVRTY 375 (1019)
Q Consensus 298 gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l-~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~-~~~~~~~~~ 375 (1019)
|+.+++++.|..|++|+...... -.+..++ .+|+..|..++|+|. |++|++||.|+++.||.-. ...+++.++
T Consensus 27 g~ilAscg~Dk~vriw~~~~~~s----~~ck~vld~~hkrsVRsvAwsp~-g~~La~aSFD~t~~Iw~k~~~efecv~~l 101 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSGDS----WTCKTVLDDGHKRSVRSVAWSPH-GRYLASASFDATVVIWKKEDGEFECVATL 101 (312)
T ss_pred ceEEEeecCCceEEEEecCCCCc----EEEEEeccccchheeeeeeecCC-CcEEEEeeccceEEEeecCCCceeEEeee
Confidence 88999999999999998875221 2344444 589999999999996 8899999999999999764 345899999
Q ss_pred cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccC--CCeEEEEEccccccEeEEEEecCCCEEEE
Q psy307 376 YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYK--EHRCVRTYYGHRQAVRDICFNNTGTNFIS 453 (1019)
Q Consensus 376 ~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~--~~~~~~~l~~H~~~V~sl~fspdg~~l~S 453 (1019)
.||...|.+++|+++| .+|++++.|..|-||.+.. .-.+...+..|...|..+.|+|....|+|
T Consensus 102 EGHEnEVK~Vaws~sG--------------~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S 167 (312)
T KOG0645|consen 102 EGHENEVKCVAWSASG--------------NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFS 167 (312)
T ss_pred eccccceeEEEEcCCC--------------CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEE
Confidence 9999999999999999 7999999999999999973 34688999999999999999999999999
Q ss_pred EEcCCeEEEEECCC---CceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC
Q psy307 454 AGYDRYLKLWDTES---GECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN 530 (1019)
Q Consensus 454 ~s~Dg~I~lWDl~t---~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg 530 (1019)
+|+|.+|++|+-.. -.+.+++..+. ..+.+++|++.|..|++++.|+
T Consensus 168 ~SYDnTIk~~~~~~dddW~c~~tl~g~~------------------------------~TVW~~~F~~~G~rl~s~sdD~ 217 (312)
T KOG0645|consen 168 CSYDNTIKVYRDEDDDDWECVQTLDGHE------------------------------NTVWSLAFDNIGSRLVSCSDDG 217 (312)
T ss_pred eccCCeEEEEeecCCCCeeEEEEecCcc------------------------------ceEEEEEecCCCceEEEecCCc
Confidence 99999999998662 24555555432 3456677788889999999999
Q ss_pred eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------ceee-eeeccCCCEEEE
Q psy307 531 KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTT------KLFK-KWKAHDGVCIST 603 (1019)
Q Consensus 531 ~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~------~~l~-~l~~h~~~V~sl 603 (1019)
+++||.....- . ..| ...+..+.|. ...|++++.|+.|+++.-... +++. .-.+|...|+++
T Consensus 218 tv~Iw~~~~~~-----~--~~~--sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV 286 (312)
T KOG0645|consen 218 TVSIWRLYTDL-----S--GMH--SRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSV 286 (312)
T ss_pred ceEeeeeccCc-----c--hhc--ccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceE
Confidence 99999865321 1 112 2567788997 447999999999999976542 1222 335788999999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEe
Q psy307 604 LWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 604 ~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
+|.|.....|++||.||.|++|-
T Consensus 287 ~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 287 QWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred EEcCCCCCceeecCCCceEEEEE
Confidence 99997668999999999998873
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-27 Score=293.99 Aligned_cols=301 Identities=18% Similarity=0.240 Sum_probs=225.6
Q ss_pred eeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc---E----EEEEecccCccEeEEEEcCCCCceeEEEeecC
Q psy307 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER---R----CVRTYYGHRQAVRDICFNNTGTNFISAIRWFP 402 (1019)
Q Consensus 330 ~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~---~----~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p 402 (1019)
.+.+|.+.|++++|+|+ +.+|++|+.|+.|+||++.... . ....+. +...| .+++|+|
T Consensus 478 ~~~~~~~~V~~i~fs~d-g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v-------------~~l~~~~ 542 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRD-GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL-------------SGICWNS 542 (793)
T ss_pred cccCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce-------------eeEEecc
Confidence 35569999999999995 8899999999999999974210 0 111111 12234 4455555
Q ss_pred CCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec-CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceE
Q psy307 403 KSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN-TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY 481 (1019)
Q Consensus 403 ~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp-dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~ 481 (1019)
..+.+|++++.||+|++||+ ..++.+..+.+|.+.|++++|+| ++.+|++|+.|++|++||++++.++..+..+..+.
T Consensus 543 ~~~~~las~~~Dg~v~lWd~-~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~ 621 (793)
T PLN00181 543 YIKSQVASSNFEGVVQVWDV-ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANIC 621 (793)
T ss_pred CCCCEEEEEeCCCeEEEEEC-CCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeE
Confidence 55579999999999999999 56678888999999999999997 78899999999999999999998877766544444
Q ss_pred EEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEE
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSL 561 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v 561 (1019)
++.|+ +++|.+|++|+.||.|++||+++... ....+.+|. ..|.++
T Consensus 622 ~v~~~------------------------------~~~g~~latgs~dg~I~iwD~~~~~~--~~~~~~~h~--~~V~~v 667 (793)
T PLN00181 622 CVQFP------------------------------SESGRSLAFGSADHKVYYYDLRNPKL--PLCTMIGHS--KTVSYV 667 (793)
T ss_pred EEEEe------------------------------CCCCCEEEEEeCCCeEEEEECCCCCc--cceEecCCC--CCEEEE
Confidence 44432 34688999999999999999986531 345667786 679999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCC------CceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeee
Q psy307 562 DFSPDMSYLISGDADGKCYIWDWKT------TKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAV 635 (1019)
Q Consensus 562 ~fspdg~~Lasgs~DG~I~IWDl~t------~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~ 635 (1019)
.|. ++.+|++++.||+|+|||+.. .+++.++.+|...+.+++|+|++ .+|++|+.||.|++|. .....
T Consensus 668 ~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~-~~~~~--- 741 (793)
T PLN00181 668 RFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYH-KAFPM--- 741 (793)
T ss_pred EEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEE-CCCCC---
Confidence 997 788999999999999999974 35788899999999999999998 6999999999998763 21110
Q ss_pred eccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhh
Q psy307 636 EMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSK 715 (1019)
Q Consensus 636 e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~ 715 (1019)
....+ .+...... . + +. ..-+...|.+++|+|++ ..++++
T Consensus 742 -------~~~s~-----------------~~~~~~~~-~----~----~~-----~~~~~~~V~~v~ws~~~--~~lva~ 781 (793)
T PLN00181 742 -------PVLSY-----------------KFKTIDPV-S----G----LE-----VDDASQFISSVCWRGQS--STLVAA 781 (793)
T ss_pred -------ceEEE-----------------ecccCCcc-c----c----cc-----cCCCCcEEEEEEEcCCC--CeEEEe
Confidence 00000 00000000 0 0 00 00134568899999998 679999
Q ss_pred cCCCchhhHHH
Q psy307 716 LSDKNASLEEK 726 (1019)
Q Consensus 716 ~~d~~i~lw~~ 726 (1019)
..+|+|++|+.
T Consensus 782 ~~dG~I~i~~~ 792 (793)
T PLN00181 782 NSTGNIKILEM 792 (793)
T ss_pred cCCCcEEEEec
Confidence 99999999974
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-27 Score=258.71 Aligned_cols=271 Identities=23% Similarity=0.343 Sum_probs=234.4
Q ss_pred CCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEe
Q psy307 296 YQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTY 375 (1019)
Q Consensus 296 ~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~ 375 (1019)
+..--++.+-..|.|.+|+... ...+..+.-..-+|.+..|-+. .+.+++|+.|..|+|++. ++.+.+..+
T Consensus 23 PtePw~la~LynG~V~IWnyet-------qtmVksfeV~~~PvRa~kfiaR-knWiv~GsDD~~IrVfny-nt~ekV~~F 93 (794)
T KOG0276|consen 23 PTEPWILAALYNGDVQIWNYET-------QTMVKSFEVSEVPVRAAKFIAR-KNWIVTGSDDMQIRVFNY-NTGEKVKTF 93 (794)
T ss_pred CCCceEEEeeecCeeEEEeccc-------ceeeeeeeecccchhhheeeec-cceEEEecCCceEEEEec-ccceeeEEe
Confidence 3334566777889999998763 3567788888889999999984 789999999999999998 667789999
Q ss_pred cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecC-CCEEEEE
Q psy307 376 YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT-GTNFISA 454 (1019)
Q Consensus 376 ~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspd-g~~l~S~ 454 (1019)
..|..-|++|+.+|.. .+++++|.|-+|++||....-.+.+++.||...|.+++|+|. .+.|+|+
T Consensus 94 eAH~DyIR~iavHPt~--------------P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~ 159 (794)
T KOG0276|consen 94 EAHSDYIRSIAVHPTL--------------PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASA 159 (794)
T ss_pred eccccceeeeeecCCC--------------CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeee
Confidence 9999999999999988 589999999999999998888999999999999999999994 5679999
Q ss_pred EcCCeEEEEECCCCceEEEEecC-CceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEE
Q psy307 455 GYDRYLKLWDTESGECISRFTSR-KVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKIL 533 (1019)
Q Consensus 455 s~Dg~I~lWDl~t~~~i~~~~~~-~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~ 533 (1019)
|.|++|+||.+....+..++..+ +.+.|+.+-+.+ +..+|++|+.|.+|+
T Consensus 160 sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~g-----------------------------dkpylIsgaDD~tiK 210 (794)
T KOG0276|consen 160 SLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGG-----------------------------DKPYLISGADDLTIK 210 (794)
T ss_pred eccccEEEEEcCCCCCceeeeccccCcceEEeccCC-----------------------------CcceEEecCCCceEE
Confidence 99999999999988888888755 556666665433 457999999999999
Q ss_pred EEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEE
Q psy307 534 IFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKV 613 (1019)
Q Consensus 534 iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l 613 (1019)
|||..+. .++.++.||. ..|..+.|+|.-.++++|+.||+++||+-.|-++..++.-.-+.|+|++-.+.+ ..+
T Consensus 211 vWDyQtk---~CV~TLeGHt--~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~-~~i 284 (794)
T KOG0276|consen 211 VWDYQTK---SCVQTLEGHT--NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGD-GKI 284 (794)
T ss_pred EeecchH---HHHHHhhccc--ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCC-CeE
Confidence 9999988 6779999998 569999999999999999999999999999998888888777889999988876 477
Q ss_pred EEEeCCCcEEE
Q psy307 614 VTAGWDAATAK 624 (1019)
Q Consensus 614 ~s~s~Dg~I~i 624 (1019)
+.|...|.|.+
T Consensus 285 ~vG~Deg~i~v 295 (794)
T KOG0276|consen 285 AVGFDEGSVTV 295 (794)
T ss_pred EEeccCCcEEE
Confidence 87777776643
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-26 Score=285.47 Aligned_cols=281 Identities=16% Similarity=0.202 Sum_probs=220.2
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCC-CccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPD-RCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC 371 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~-~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~ 371 (1019)
.++++|+.+++++.|+.|++|+..... .......++..+.+ ...|.+++|+|..+.+|++|+.||+|+|||+ ..++.
T Consensus 490 ~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~-~~~~~ 567 (793)
T PLN00181 490 GFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVWDV-ARSQL 567 (793)
T ss_pred EECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEEEC-CCCeE
Confidence 477899999999999999999864311 01111122334444 4689999999877889999999999999999 45677
Q ss_pred EEEecccCccEeEEEEcC-CCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEe-cCCC
Q psy307 372 VRTYYGHRQAVRDICFNN-TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN-NTGT 449 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fsp-dg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fs-pdg~ 449 (1019)
+..+.+|.+.|.+++|+| ++ .+|++|+.||+|++||+. .+.++..+..+ ..|.++.|+ ++|.
T Consensus 568 ~~~~~~H~~~V~~l~~~p~~~--------------~~L~Sgs~Dg~v~iWd~~-~~~~~~~~~~~-~~v~~v~~~~~~g~ 631 (793)
T PLN00181 568 VTEMKEHEKRVWSIDYSSADP--------------TLLASGSDDGSVKLWSIN-QGVSIGTIKTK-ANICCVQFPSESGR 631 (793)
T ss_pred EEEecCCCCCEEEEEEcCCCC--------------CEEEEEcCCCEEEEEECC-CCcEEEEEecC-CCeEEEEEeCCCCC
Confidence 888999999999999986 45 689999999999999994 45666666654 679999995 5789
Q ss_pred EEEEEEcCCeEEEEECCCCc-eEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec
Q psy307 450 NFISAGYDRYLKLWDTESGE-CISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM 528 (1019)
Q Consensus 450 ~l~S~s~Dg~I~lWDl~t~~-~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~ 528 (1019)
+|++|+.||+|++||++++. .+..+. .|...|.++.|. ++.+|++++.
T Consensus 632 ~latgs~dg~I~iwD~~~~~~~~~~~~------------------------------~h~~~V~~v~f~-~~~~lvs~s~ 680 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRNPKLPLCTMI------------------------------GHSKTVSYVRFV-DSSTLVSSST 680 (793)
T ss_pred EEEEEeCCCeEEEEECCCCCccceEec------------------------------CCCCCEEEEEEe-CCCEEEEEEC
Confidence 99999999999999998754 233222 233455666665 6778999999
Q ss_pred CCeEEEEEccCcc---cccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee------------
Q psy307 529 DNKILIFSALNRF---KLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKW------------ 593 (1019)
Q Consensus 529 Dg~I~iwd~~~~~---~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l------------ 593 (1019)
|++|++||+.... ....+..+.+|. ..+.+++|+|++.+|++|+.||.|++|+.....++..+
T Consensus 681 D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~ 758 (793)
T PLN00181 681 DNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLE 758 (793)
T ss_pred CCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccc
Confidence 9999999997431 123456788887 66889999999999999999999999998766544322
Q ss_pred -eccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 594 -KAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 594 -~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
..|...|.+++|+|++ ..+++|+.||.|++|
T Consensus 759 ~~~~~~~V~~v~ws~~~-~~lva~~~dG~I~i~ 790 (793)
T PLN00181 759 VDDASQFISSVCWRGQS-STLVAANSTGNIKIL 790 (793)
T ss_pred cCCCCcEEEEEEEcCCC-CeEEEecCCCcEEEE
Confidence 2345579999999998 689999999999877
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-28 Score=254.26 Aligned_cols=274 Identities=20% Similarity=0.372 Sum_probs=214.6
Q ss_pred CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC
Q psy307 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM 413 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~ 413 (1019)
..++|+|+.+.. ..++||..|++|+|||. +...|++.+.||++.|.|+.|.. ..|++||.
T Consensus 196 ~skgVYClQYDD---~kiVSGlrDnTikiWD~-n~~~c~~~L~GHtGSVLCLqyd~----------------rviisGSS 255 (499)
T KOG0281|consen 196 NSKGVYCLQYDD---EKIVSGLRDNTIKIWDK-NSLECLKILTGHTGSVLCLQYDE----------------RVIVSGSS 255 (499)
T ss_pred cCCceEEEEecc---hhhhcccccCceEEecc-ccHHHHHhhhcCCCcEEeeeccc----------------eEEEecCC
Confidence 457899999853 58999999999999998 77889999999999999998864 68999999
Q ss_pred CCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeee
Q psy307 414 DCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQH 493 (1019)
Q Consensus 414 Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~ 493 (1019)
|.+|+|||+ .+++++.++.+|...|..+.|+. .+++++|.|.+|.+||+....-+.
T Consensus 256 DsTvrvWDv-~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it--------------------- 311 (499)
T KOG0281|consen 256 DSTVRVWDV-NTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDIT--------------------- 311 (499)
T ss_pred CceEEEEec-cCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHH---------------------
Confidence 999999999 88899999999999999999974 689999999999999987543110
Q ss_pred eccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEE
Q psy307 494 LDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISG 573 (1019)
Q Consensus 494 ~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasg 573 (1019)
...+...|...|..+.| +.++++++|.|.+|++|++.+. ..+.++.||. ..|-|+.+ .|+++++|
T Consensus 312 ------~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~---efvRtl~gHk--RGIAClQY--r~rlvVSG 376 (499)
T KOG0281|consen 312 ------LRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTC---EFVRTLNGHK--RGIACLQY--RDRLVVSG 376 (499)
T ss_pred ------HHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccce---eeehhhhccc--ccceehhc--cCeEEEec
Confidence 11122334445555555 4569999999999999999987 6678899998 44767766 79999999
Q ss_pred eCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeee------------eeccccC
Q psy307 574 DADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIA------------VEMEKQV 641 (1019)
Q Consensus 574 s~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~------------~e~~~~v 641 (1019)
++|.+|++||+..|.+++.++||..-|.++.|.. ..+++|+.||+|++| |.....-. .+..+++
T Consensus 377 SSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~---krIVSGaYDGkikvW-dl~aaldpra~~~~~Cl~~lv~hsgRV 452 (499)
T KOG0281|consen 377 SSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN---KRIVSGAYDGKIKVW-DLQAALDPRAPASTLCLRTLVEHSGRV 452 (499)
T ss_pred CCCceEEEEeccccHHHHHHhchHHhhhheeecC---ceeeeccccceEEEE-ecccccCCcccccchHHHhhhhcccee
Confidence 9999999999999999999999999999999963 579999999999776 43321111 0111111
Q ss_pred CceeecccccccchhhhhhhcccccCCCce
Q psy307 642 PQLYQFNQTLTLSSIIQEICSGWSLSDSEQ 671 (1019)
Q Consensus 642 ~ql~~l~~~~~LSs~~~~~~~~wsls~~e~ 671 (1019)
--++|+....++...+..+..|+|.++..
T Consensus 453 -FrLQFD~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 453 -FRLQFDEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred -EEEeecceEEEeccCCCeEEEEEcCCCCc
Confidence 12345555555555566666666654443
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=245.84 Aligned_cols=285 Identities=21% Similarity=0.349 Sum_probs=240.1
Q ss_pred CCCCCCCCeeeeCCCCCceeeecCCCCC-CccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcE
Q psy307 292 DPTDYQGRSFLHPPHDVGTNLRSDTPPD-RCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERR 370 (1019)
Q Consensus 292 ~~~~~~gr~~~~~~~D~~v~lw~~~~~~-~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~ 370 (1019)
..++++|.++++++-||-|-+|+..... +..+..+..-.+.-|..+|.|++|+.| ...|++|+.||.|+||.+ ..+.
T Consensus 219 A~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD-sEMlAsGsqDGkIKvWri-~tG~ 296 (508)
T KOG0275|consen 219 ARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD-SEMLASGSQDGKIKVWRI-ETGQ 296 (508)
T ss_pred eeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc-HHHhhccCcCCcEEEEEE-ecch
Confidence 3579999999999999999999875432 222333444566778999999999996 789999999999999999 6678
Q ss_pred EEEEec-ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCC
Q psy307 371 CVRTYY-GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT 449 (1019)
Q Consensus 371 ~~~~~~-gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~ 449 (1019)
|++.+. .|++.|+|+.|+.|+ ..+++++.|.+++|.-+ ..++++..+.||++.|+...|.++|.
T Consensus 297 ClRrFdrAHtkGvt~l~FSrD~--------------SqiLS~sfD~tvRiHGl-KSGK~LKEfrGHsSyvn~a~ft~dG~ 361 (508)
T KOG0275|consen 297 CLRRFDRAHTKGVTCLSFSRDN--------------SQILSASFDQTVRIHGL-KSGKCLKEFRGHSSYVNEATFTDDGH 361 (508)
T ss_pred HHHHhhhhhccCeeEEEEccCc--------------chhhcccccceEEEecc-ccchhHHHhcCccccccceEEcCCCC
Confidence 888876 899999999999998 58999999999999999 88899999999999999999999999
Q ss_pred EEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC-CCCEEEEEec
Q psy307 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP-NNKWLACQSM 528 (1019)
Q Consensus 450 ~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp-dg~~Lasgs~ 528 (1019)
.++++|.||+|++|+..+.+|+.+|.... ...+|.++-.-| +...++++..
T Consensus 362 ~iisaSsDgtvkvW~~KtteC~~Tfk~~~----------------------------~d~~vnsv~~~PKnpeh~iVCNr 413 (508)
T KOG0275|consen 362 HIISASSDGTVKVWHGKTTECLSTFKPLG----------------------------TDYPVNSVILLPKNPEHFIVCNR 413 (508)
T ss_pred eEEEecCCccEEEecCcchhhhhhccCCC----------------------------CcccceeEEEcCCCCceEEEEcC
Confidence 99999999999999999999999887532 112233333333 3356778888
Q ss_pred CCeEEEEEccCcccccceeEEe-ccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcC
Q psy307 529 DNKILIFSALNRFKLNRKKTFE-GHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHP 607 (1019)
Q Consensus 529 Dg~I~iwd~~~~~~~~~~~~l~-gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp 607 (1019)
.++|+|-++... .++.+. |...++...+++.||.|.++.+.+.|+.++.+.+.+|++-+++..|...|.+++-||
T Consensus 414 sntv~imn~qGQ----vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP 489 (508)
T KOG0275|consen 414 SNTVYIMNMQGQ----VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP 489 (508)
T ss_pred CCeEEEEeccce----EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCc
Confidence 899999988753 334443 444556677789999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEe
Q psy307 608 HEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 608 ~~~~~l~s~s~Dg~I~iww 626 (1019)
+. ..+++-+.||.+++|.
T Consensus 490 Hq-NllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 490 HQ-NLLASYSEDGLLKLWK 507 (508)
T ss_pred cc-chhhhhcccchhhhcC
Confidence 98 6999999999998873
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=252.64 Aligned_cols=307 Identities=19% Similarity=0.297 Sum_probs=229.6
Q ss_pred cccCCCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC
Q psy307 289 HIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE 368 (1019)
Q Consensus 289 ~~~~~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~ 368 (1019)
...-..++.|.++++|+.|.+|++|+..+........+.+.--.+| .|.+++|++. +..|++.+.....+|+|- .+
T Consensus 170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h--~i~sl~ys~T-g~~iLvvsg~aqakl~DR-dG 245 (641)
T KOG0772|consen 170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETH--QINSLQYSVT-GDQILVVSGSAQAKLLDR-DG 245 (641)
T ss_pred EEEeeecCCCceeeeccccceEEEEecccccccchhhhccCccccc--ccceeeecCC-CCeEEEEecCcceeEEcc-CC
Confidence 3445689999999999999999999999887766666666666667 7999999995 677777777889999996 33
Q ss_pred cEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEc-----cccccEeEEE
Q psy307 369 RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYY-----GHRQAVRDIC 443 (1019)
Q Consensus 369 ~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~-----~H~~~V~sl~ 443 (1019)
.......+| ...|.++.-..-..-.++|.+|+|.....+++++.||+++|||+.......+.+. +..-.+++++
T Consensus 246 ~~~~e~~KG-DQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~ 324 (641)
T KOG0772|consen 246 FEIVEFSKG-DQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCA 324 (641)
T ss_pred ceeeeeecc-chhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeee
Confidence 333333322 1223333222222222344455555568999999999999999977665555543 3445789999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCC--cccEEEEcCCCC
Q psy307 444 FNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMH--SMPAVTSSPNNK 521 (1019)
Q Consensus 444 fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~--~i~~v~~spdg~ 521 (1019)
|+++|+.|++|+.||.|.+|+......-- ..++...|.. .|++++||++|+
T Consensus 325 ~nrdg~~iAagc~DGSIQ~W~~~~~~v~p---------------------------~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 325 WNRDGKLIAAGCLDGSIQIWDKGSRTVRP---------------------------VMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred cCCCcchhhhcccCCceeeeecCCccccc---------------------------ceEeeeccCCCCceeEEEeccccc
Confidence 99999999999999999999974322110 1122333433 799999999999
Q ss_pred EEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCceeeeeec
Q psy307 522 WLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA------DGKCYIWDWKTTKLFKKWKA 595 (1019)
Q Consensus 522 ~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~------DG~I~IWDl~t~~~l~~l~~ 595 (1019)
+|++-+.|+++++||++.... ++....+-...-.-+.++|||+.++|++|+. .|++++||..+...+.++.-
T Consensus 378 ~LlSRg~D~tLKvWDLrq~kk--pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i 455 (641)
T KOG0772|consen 378 YLLSRGFDDTLKVWDLRQFKK--PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI 455 (641)
T ss_pred hhhhccCCCceeeeecccccc--chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC
Confidence 999999999999999987532 2333333333344567899999999999864 57899999999999999987
Q ss_pred cCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccce
Q psy307 596 HDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANI 630 (1019)
Q Consensus 596 h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i 630 (1019)
....|..+.|||.- ..|+.++.||++++++|.+-
T Consensus 456 ~~aSvv~~~WhpkL-NQi~~gsgdG~~~vyYdp~~ 489 (641)
T KOG0772|consen 456 STASVVRCLWHPKL-NQIFAGSGDGTAHVYYDPNE 489 (641)
T ss_pred CCceEEEEeecchh-hheeeecCCCceEEEECccc
Confidence 78889999999987 46778888999999998874
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=252.79 Aligned_cols=285 Identities=25% Similarity=0.361 Sum_probs=240.9
Q ss_pred ccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-EEEEEecccCccEeEEEEcCCCCceeEEEe
Q psy307 321 CFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-RCVRTYYGHRQAVRDICFNNTGTNFISAIR 399 (1019)
Q Consensus 321 ~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~~~~~~~gh~~~V~~i~fspdg~~~vs~i~ 399 (1019)
..+|......+..|.+.|..+.|-++ ...|++|+.|..|++|++...+ ..+.++.|..++|+++.|.+++
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~-sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~-------- 231 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRN-SDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDN-------- 231 (459)
T ss_pred cccchhhhhhhhccccccceeEEccC-cchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCC--------
Confidence 34677888899999999999999994 6789999999999999995433 3567888999999999999998
Q ss_pred ecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCc
Q psy307 400 WFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKV 479 (1019)
Q Consensus 400 ~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~ 479 (1019)
+.+++++.|+.+++|++ ...+...++.||++.|+++.|......+++|+.|.+|++||+....|..++-....
T Consensus 232 ------~~~iAas~d~~~r~Wnv-d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~ 304 (459)
T KOG0288|consen 232 ------KHVIAASNDKNLRLWNV-DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQ 304 (459)
T ss_pred ------ceEEeecCCCceeeeec-cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccccc
Confidence 68999999999999999 78888999999999999999998777799999999999999999999887755443
Q ss_pred eEEEEE--------ecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEe-
Q psy307 480 AYCVKF--------HPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFE- 550 (1019)
Q Consensus 480 v~~v~~--------~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~- 550 (1019)
+..+.. |-++...++++.........+..+.|+++..+++|..|.+++.|.++.++|+++... ..++.
T Consensus 305 cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI---~~~~sA 381 (459)
T KOG0288|consen 305 CNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI---RQTFSA 381 (459)
T ss_pred ccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccE---EEEeec
Confidence 333322 445666677777766666677778999999999999999999999999999998633 33332
Q ss_pred -ccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCC--CEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 551 -GHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDG--VCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 551 -gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~--~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+...+.-.+.+.|||++.|+++|+.||.|+||++.++++...+..... .|++++|+|.| +.+++++.++.+.+|
T Consensus 382 ~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG-~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 382 EGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSG-SGLLSADKQKAVTLW 458 (459)
T ss_pred cccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCC-chhhcccCCcceEec
Confidence 333445588999999999999999999999999999999888875444 59999999998 689999999999877
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-27 Score=234.31 Aligned_cols=270 Identities=17% Similarity=0.302 Sum_probs=229.0
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVR 373 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~ 373 (1019)
-.++|=.+++++.|+.--|++-. .+.-|.+|.||.+.|+..++.. +....++++.|-+-+|||.- .+..++
T Consensus 25 itp~g~flisa~kd~~pmlr~g~-------tgdwigtfeghkgavw~~~l~~-na~~aasaaadftakvw~a~-tgdelh 95 (334)
T KOG0278|consen 25 ITPDGYFLISASKDGKPMLRNGD-------TGDWIGTFEGHKGAVWSATLNK-NATRAASAAADFTAKVWDAV-TGDELH 95 (334)
T ss_pred CCCCceEEEEeccCCCchhccCC-------CCCcEEeeeccCcceeeeecCc-hhhhhhhhcccchhhhhhhh-hhhhhh
Confidence 34678888999988766555443 4567999999999999999988 47889999999999999984 444455
Q ss_pred EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE
Q psy307 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS 453 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S 453 (1019)
.+ .|..-|..++|+.|. ++|++|+.+..++|+|+.....+...+.+|.+.|..+-|....+.|+|
T Consensus 96 sf-~hkhivk~~af~~ds--------------~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 96 SF-EHKHIVKAVAFSQDS--------------NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILS 160 (334)
T ss_pred hh-hhhheeeeEEecccc--------------hhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEe
Confidence 55 488899999999988 799999999999999998888899999999999999999999999999
Q ss_pred EEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEE
Q psy307 454 AGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKIL 533 (1019)
Q Consensus 454 ~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~ 533 (1019)
+++|++||+||.+++..++++.....+ +++.++++|++|.+ ...+.|.
T Consensus 161 Sadd~tVRLWD~rTgt~v~sL~~~s~V-------------------------------tSlEvs~dG~ilTi-a~gssV~ 208 (334)
T KOG0278|consen 161 SADDKTVRLWDHRTGTEVQSLEFNSPV-------------------------------TSLEVSQDGRILTI-AYGSSVK 208 (334)
T ss_pred eccCCceEEEEeccCcEEEEEecCCCC-------------------------------cceeeccCCCEEEE-ecCceeE
Confidence 999999999999999999888776544 44555667776654 4578999
Q ss_pred EEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee-eccCCCEEEEEEcCCCCcE
Q psy307 534 IFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKW-KAHDGVCISTLWHPHEPSK 612 (1019)
Q Consensus 534 iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l-~~h~~~V~sl~~sp~~~~~ 612 (1019)
+||..+-. .++.+.-. ..|.+...+|+..++++|+.|+.++.||..|+..+..+ ++|.++|.|+.|+|+| ..
T Consensus 209 Fwdaksf~---~lKs~k~P---~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdG-E~ 281 (334)
T KOG0278|consen 209 FWDAKSFG---LLKSYKMP---CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDG-EL 281 (334)
T ss_pred Eecccccc---ceeeccCc---cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCC-ce
Confidence 99998753 33444333 55888999999999999999999999999999999986 8999999999999999 58
Q ss_pred EEEEeCCCcEEEEe
Q psy307 613 VVTAGWDAATAKVQ 626 (1019)
Q Consensus 613 l~s~s~Dg~I~iww 626 (1019)
.++||.||+|++|.
T Consensus 282 yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 282 YASGSEDGTIRLWQ 295 (334)
T ss_pred eeccCCCceEEEEE
Confidence 99999999998884
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-26 Score=251.11 Aligned_cols=247 Identities=20% Similarity=0.392 Sum_probs=216.0
Q ss_pred eeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEE
Q psy307 329 HTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 329 ~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L 408 (1019)
+++..|+..|.+|.|+|. ...++++-..|.|.|||. .+...++.+.-..-+|++..|-+.. +.+
T Consensus 7 rk~~~rSdRVKsVd~HPt-ePw~la~LynG~V~IWny-etqtmVksfeV~~~PvRa~kfiaRk--------------nWi 70 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPT-EPWILAALYNGDVQIWNY-ETQTMVKSFEVSEVPVRAAKFIARK--------------NWI 70 (794)
T ss_pred hHhhccCCceeeeecCCC-CceEEEeeecCeeEEEec-ccceeeeeeeecccchhhheeeecc--------------ceE
Confidence 456669999999999994 789999999999999998 5667788888888899999888766 799
Q ss_pred EEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEEEecC-CceEEEEEe
Q psy307 409 LSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESG-ECISRFTSR-KVAYCVKFH 486 (1019)
Q Consensus 409 ~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~-~~i~~~~~~-~~v~~v~~~ 486 (1019)
++|+.|..|+||+. .+...+..+.+|...|.+|+.+|...+++|+|.|-+|++||.+.+ .|.++|++| ..+.+++|+
T Consensus 71 v~GsDD~~IrVfny-nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fn 149 (794)
T KOG0276|consen 71 VTGSDDMQIRVFNY-NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFN 149 (794)
T ss_pred EEecCCceEEEEec-ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEec
Confidence 99999999999999 788889999999999999999999999999999999999999765 566777655 334445544
Q ss_pred cCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCC
Q psy307 487 PDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPD 566 (1019)
Q Consensus 487 p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspd 566 (1019)
|. |.+.++++|.|++|+||.+... .+..++.||. ..|+|+.|-+.
T Consensus 150 Pk------------------------------D~ntFaS~sLDrTVKVWslgs~---~~nfTl~gHe--kGVN~Vdyy~~ 194 (794)
T KOG0276|consen 150 PK------------------------------DPNTFASASLDRTVKVWSLGSP---HPNFTLEGHE--KGVNCVDYYTG 194 (794)
T ss_pred CC------------------------------CccceeeeeccccEEEEEcCCC---CCceeeeccc--cCcceEEeccC
Confidence 43 4578999999999999999876 5568899998 55999999885
Q ss_pred C--CEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEecc
Q psy307 567 M--SYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDA 628 (1019)
Q Consensus 567 g--~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~ 628 (1019)
| .||++|+.|.+|+|||.++..+++++.+|...|..+.|||.-+ +++|||.||++++|...
T Consensus 195 gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 195 GDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSK 257 (794)
T ss_pred CCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCc
Confidence 5 5999999999999999999999999999999999999999884 99999999999988543
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-26 Score=228.58 Aligned_cols=243 Identities=22% Similarity=0.371 Sum_probs=203.3
Q ss_pred CCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC
Q psy307 335 TKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD 414 (1019)
Q Consensus 335 ~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D 414 (1019)
.+.+..++|++...+.+++++.||+++|||+.....+++.++.|...|.++.|++... ..++++|.|
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r-------------~~~ltsSWD 126 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRR-------------RIFLTSSWD 126 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccc-------------eeEEeeccC
Confidence 4689999999988899999999999999998777789999999999999888877543 678888999
Q ss_pred CcEEEEEccCCCeEEEEEccccccEeEEEEecC-CCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeee
Q psy307 415 CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT-GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQH 493 (1019)
Q Consensus 415 g~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspd-g~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~ 493 (1019)
++|++|+. .....++++.+|...|...+|+|. .+.|+++|.|+++++||++.......+..+.
T Consensus 127 ~TiKLW~~-~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~--------------- 190 (311)
T KOG0277|consen 127 GTIKLWDP-NRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHN--------------- 190 (311)
T ss_pred CceEeecC-CCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEecc---------------
Confidence 99999999 667778889999999999999995 6689999999999999987543222243332
Q ss_pred eccCCCceeeeCCCCCcccEEEEcC-CCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCC-CCEEE
Q psy307 494 LDIPVDMKYIADPTMHSMPAVTSSP-NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPD-MSYLI 571 (1019)
Q Consensus 494 ~~~~~~~~~i~~~~~~~i~~v~~sp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspd-g~~La 571 (1019)
..+.++.|+. +...+++|+.|+.|++||+++-. .++..+.+|. -.|..+.|||. ...|+
T Consensus 191 ---------------~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~--~AVRkvk~Sph~~~lLa 251 (311)
T KOG0277|consen 191 ---------------SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHG--LAVRKVKFSPHHASLLA 251 (311)
T ss_pred ---------------ceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCc--eEEEEEecCcchhhHhh
Confidence 2334444443 45789999999999999998754 3467788887 55999999995 45899
Q ss_pred EEeCCCeEEEEeCCCC-ceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 572 SGDADGKCYIWDWKTT-KLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 572 sgs~DG~I~IWDl~t~-~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+++.|-+++|||...+ ..+.+...|..-|.++.|++..+.+++++|+|+.+++|
T Consensus 252 SasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw 306 (311)
T KOG0277|consen 252 SASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVW 306 (311)
T ss_pred hccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeee
Confidence 9999999999998854 45667788999999999999988999999999999877
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-24 Score=222.70 Aligned_cols=273 Identities=20% Similarity=0.361 Sum_probs=222.9
Q ss_pred eeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEE
Q psy307 329 HTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 329 ~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L 408 (1019)
+.+..-.+.|+++.|+++ |.+|++++.|.+++|||. ..++.++++..+.-.|..++|.... +.+
T Consensus 8 k~f~~~~~~i~sl~fs~~-G~~litss~dDsl~LYd~-~~g~~~~ti~skkyG~~~~~Fth~~--------------~~~ 71 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDD-GLLLITSSEDDSLRLYDS-LSGKQVKTINSKKYGVDLACFTHHS--------------NTV 71 (311)
T ss_pred cccccCCCceeEEEecCC-CCEEEEecCCCeEEEEEc-CCCceeeEeecccccccEEEEecCC--------------ceE
Confidence 344455678999999995 889999999999999999 6678888998888899999998766 345
Q ss_pred EEEeC--CCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEe
Q psy307 409 LSCSM--DCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFH 486 (1019)
Q Consensus 409 ~sgs~--Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~ 486 (1019)
+.++. |.+|+..++ ...+.++.+.||...|++|+.+|-+..|+|++.|++|++||++..+|...+..... ..++|.
T Consensus 72 i~sStk~d~tIryLsl-~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfD 149 (311)
T KOG1446|consen 72 IHSSTKEDDTIRYLSL-HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFD 149 (311)
T ss_pred EEccCCCCCceEEEEe-ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC-cceeEC
Confidence 55555 899999999 88899999999999999999999999999999999999999999988877765443 356888
Q ss_pred cCCCeeeeccCCCcee----------------eeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEe
Q psy307 487 PDEDKQHLDIPVDMKY----------------IADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFE 550 (1019)
Q Consensus 487 p~~~~~~~~~~~~~~~----------------i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~ 550 (1019)
|+|-..++........ +..+.....+.+.|||+|++++.++..+.+++.|.-++. .+.++.
T Consensus 150 p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~---~~~tfs 226 (311)
T KOG1446|consen 150 PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT---VKSTFS 226 (311)
T ss_pred CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc---EeeeEe
Confidence 9887776644432221 222345567789999999999999999999999998884 456777
Q ss_pred cccccc-ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec-cCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 551 GHMVAG-YACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA-HDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 551 gh~~~~-~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~-h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
++...+ .....+|+|||+++++|+.||+|++|+++++..+..+++ +.+++.++.|+|.- .+++|++ ..+..|
T Consensus 227 ~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~-~mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 227 GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY-AMFVSAS--SNLVFW 300 (311)
T ss_pred eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCce-eeeeecC--ceEEEE
Confidence 766444 235789999999999999999999999999999999998 78899999999975 3555554 455444
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=252.92 Aligned_cols=266 Identities=14% Similarity=0.170 Sum_probs=198.5
Q ss_pred CCCeeeeCCCCCceeeecCCCCCCccCC----c---cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc
Q psy307 297 QGRSFLHPPHDVGTNLRSDTPPDRCFLP----K---TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER 369 (1019)
Q Consensus 297 ~gr~~~~~~~D~~v~lw~~~~~~~~~lp----~---~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~ 369 (1019)
++..++.+..+.....|+..+.. ..++ + .....+.||.+.|++++|+|.++.+|++|+.||+|+|||+...+
T Consensus 31 d~~~~~~~n~~~~a~~w~~~gg~-~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~ 109 (493)
T PTZ00421 31 DCSNTIACNDRFIAVPWQQLGST-AVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEG 109 (493)
T ss_pred CCCCcEeECCceEEEEEecCCce-EEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCc
Confidence 44555565555555556543211 1111 0 11235789999999999999557899999999999999995432
Q ss_pred ------EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEE
Q psy307 370 ------RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDIC 443 (1019)
Q Consensus 370 ------~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~ 443 (1019)
.++..+.+|...|.+++|+|++. ++|++|+.|++|+|||+ ..+..+..+.+|...|.+++
T Consensus 110 ~~~~~~~~l~~L~gH~~~V~~l~f~P~~~-------------~iLaSgs~DgtVrIWDl-~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 110 LTQNISDPIVHLQGHTKKVGIVSFHPSAM-------------NVLASAGADMVVNVWDV-ERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred cccccCcceEEecCCCCcEEEEEeCcCCC-------------CEEEEEeCCCEEEEEEC-CCCeEEEEEcCCCCceEEEE
Confidence 35678899999999999998753 68999999999999999 55677888999999999999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEE
Q psy307 444 FNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWL 523 (1019)
Q Consensus 444 fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~L 523 (1019)
|+|+|..|++++.|++|++||+++++.+..+..+.. .....+.|.+++..+
T Consensus 176 ~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~-----------------------------~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 176 WNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS-----------------------------AKSQRCLWAKRKDLI 226 (493)
T ss_pred EECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCC-----------------------------CcceEEEEcCCCCeE
Confidence 999999999999999999999999988776654321 112234566666666
Q ss_pred EEEe----cCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeeeec-cC
Q psy307 524 ACQS----MDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD-ADGKCYIWDWKTTKLFKKWKA-HD 597 (1019)
Q Consensus 524 asgs----~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl~t~~~l~~l~~-h~ 597 (1019)
++++ .|++|++||+++... .......+. ...+..+.|++++++|++|+ .||.|++||+.+++++..... +.
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~--p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~ 303 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMAS--PYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSV 303 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCC--ceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCC
Confidence 6543 479999999986532 222222222 24466678999999998887 599999999999988776654 44
Q ss_pred CCEEEEEEcCCC
Q psy307 598 GVCISTLWHPHE 609 (1019)
Q Consensus 598 ~~V~sl~~sp~~ 609 (1019)
.++.+++|.|..
T Consensus 304 ~~~~g~~~~pk~ 315 (493)
T PTZ00421 304 EPHKGLCMMPKW 315 (493)
T ss_pred CCCcceEecccc
Confidence 567888888854
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=256.21 Aligned_cols=353 Identities=18% Similarity=0.309 Sum_probs=258.5
Q ss_pred cCCCCeE---EEEEcCCCCcEEEEeeCCCeEEEEecCCCcE-----EEEEecccCccEeEEEEcCCCCceeEEEeecCCC
Q psy307 333 GHTKGIS---AIRWFPKSAHLLLSCSMDCRVKLWEVYKERR-----CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKS 404 (1019)
Q Consensus 333 gH~~~V~---~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~-----~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~ 404 (1019)
.|...|. ++..+..++++|+|||.||.|++|++..... ++..+..|...|+++....+|
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~------------- 85 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG------------- 85 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC-------------
Confidence 3555666 6677777788999999999999999854322 577788999999999999888
Q ss_pred CcEEEEEeCCCcEEEEEccCCC-eEEEEEccccccEeEEEE-ecCCCEEEEEEcCCeEEEEECCCCc--eEEEEecCCce
Q psy307 405 AHLLLSCSMDCRVKLWEVYKEH-RCVRTYYGHRQAVRDICF-NNTGTNFISAGYDRYLKLWDTESGE--CISRFTSRKVA 480 (1019)
Q Consensus 405 ~~~L~sgs~Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~f-spdg~~l~S~s~Dg~I~lWDl~t~~--~i~~~~~~~~v 480 (1019)
+.|+|+|.|-+|++|+..... .+..++..|...|.|+++ .++...++|||.|+.|.|||++++. .+.++..-. +
T Consensus 86 -~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t-~ 163 (735)
T KOG0308|consen 86 -KTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT-V 163 (735)
T ss_pred -CceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccc-c
Confidence 689999999999999996555 788899999999999999 7888899999999999999999883 333332210 0
Q ss_pred EEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEE
Q psy307 481 YCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560 (1019)
Q Consensus 481 ~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~ 560 (1019)
......+..++.+++.++.|..|++|+..+.|++||.++.. .+..+.||+ ..|..
T Consensus 164 --------------------~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~---kimkLrGHT--dNVr~ 218 (735)
T KOG0308|consen 164 --------------------NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK---KIMKLRGHT--DNVRV 218 (735)
T ss_pred --------------------ccCCCCCccceeeeecCCcceEEEecCcccceEEecccccc---ceeeeeccc--cceEE
Confidence 00111445678899999999999999999999999999884 456778998 66999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceee--eeeecc
Q psy307 561 LDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVK--IAVEME 638 (1019)
Q Consensus 561 v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~k--i~~e~~ 638 (1019)
+-.++||..++++++||+|++||+...+++.++..|...|+++..+|+- ..+.+||.||.|.+=--.+..+ ......
T Consensus 219 ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~~~tlick~d 297 (735)
T KOG0308|consen 219 LLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPAKSTLICKED 297 (735)
T ss_pred EEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCc-ceEEecCCCCcEEecccCCchhheEeecCC
Confidence 9999999999999999999999999999999999999999999999887 6999999999997754343211 111222
Q ss_pred ccCCceeecccccccc-hhhhhhhcccccCCCc------eeEEEeecCCCceEEe-ccccccccC-CceEEEEecCCccH
Q psy307 639 KQVPQLYQFNQTLTLS-SIIQEICSGWSLSDSE------QYALQFSETNNKNYIT-EKNRNEIKN-GSVLRLAFSASKTA 709 (1019)
Q Consensus 639 ~~v~ql~~l~~~~~LS-s~~~~~~~~wsls~~e------~~al~~sd~~~~~~it-~~~~~~I~n-g~Vl~LafSPd~~a 709 (1019)
.++.++..-.+...+| +..+..+..|...... .+...+.+.++-.+-. ......|+. ..|.+-++-.++
T Consensus 298 aPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dk-- 375 (735)
T KOG0308|consen 298 APVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDK-- 375 (735)
T ss_pred CchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCc--
Confidence 2222222211122222 2334555566644221 1222222222211111 011112343 357777888888
Q ss_pred HHHHhhcCCCchhhHHHHH
Q psy307 710 DDILSKLSDKNASLEEKTA 728 (1019)
Q Consensus 710 ~~Ilt~~~d~~i~lw~~~~ 728 (1019)
++|+|....|++.+|+..+
T Consensus 376 RhVlTkDa~gnv~lwDIl~ 394 (735)
T KOG0308|consen 376 RHVLTKDAKGNVALWDILA 394 (735)
T ss_pred ceEeeecCCCCEEEEEeee
Confidence 9999999999999999644
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=255.39 Aligned_cols=331 Identities=20% Similarity=0.342 Sum_probs=251.2
Q ss_pred eccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEE
Q psy307 331 WEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLS 410 (1019)
Q Consensus 331 l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~s 410 (1019)
+..-+..|..++|+|. ...++++-..|.|++||. ..+.++..+..|.++|+.++|+|++ .+++|
T Consensus 5 fEskSsRvKglsFHP~-rPwILtslHsG~IQlWDY-RM~tli~rFdeHdGpVRgv~FH~~q--------------plFVS 68 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPK-RPWILTSLHSGVIQLWDY-RMGTLIDRFDEHDGPVRGVDFHPTQ--------------PLFVS 68 (1202)
T ss_pred hhcccccccceecCCC-CCEEEEeecCceeeeehh-hhhhHHhhhhccCCccceeeecCCC--------------CeEEe
Confidence 4556678999999994 889999999999999998 6778899999999999999999998 59999
Q ss_pred EeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCC
Q psy307 411 CSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDED 490 (1019)
Q Consensus 411 gs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~ 490 (1019)
|+.|-.|+||+. ...+|+.++.||-..|..+.|++.-.+|+|+|.|.+|+||+..+++|+..++++.
T Consensus 69 GGDDykIkVWnY-k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHn------------ 135 (1202)
T KOG0292|consen 69 GGDDYKIKVWNY-KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHN------------ 135 (1202)
T ss_pred cCCccEEEEEec-ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCc------------
Confidence 999999999999 8889999999999999999999999999999999999999999999998887653
Q ss_pred eeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCccc--------------------------cc
Q psy307 491 KQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFK--------------------------LN 544 (1019)
Q Consensus 491 ~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~--------------------------~~ 544 (1019)
|.|.|..|+|....++++|.|.+|+|||+..-.. ..
T Consensus 136 ------------------HYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV 197 (1202)
T KOG0292|consen 136 ------------------HYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV 197 (1202)
T ss_pred ------------------eEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCee
Confidence 5566666777788999999999999999864211 11
Q ss_pred ceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--eeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcE
Q psy307 545 RKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKL--FKKWKAHDGVCISTLWHPHEPSKVVTAGWDAAT 622 (1019)
Q Consensus 545 ~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~--l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I 622 (1019)
....+.||. ..|+-++|+|.-.+++||+.|..|++|.+...+. +.+..+|.+.|.++.|||.. .+++|.|.|++|
T Consensus 198 VK~VLEGHD--RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q-~lIlSnsEDksi 274 (1202)
T KOG0292|consen 198 VKHVLEGHD--RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSI 274 (1202)
T ss_pred eeeeecccc--cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCcc-ceeEecCCCccE
Confidence 234567776 5588999999999999999999999999876654 55778999999999999987 599999999999
Q ss_pred EEEeccceeeeeeeccccCCceeecc---cccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccc------
Q psy307 623 AKVQDANIVKIAVEMEKQVPQLYQFN---QTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEI------ 693 (1019)
Q Consensus 623 ~iwwd~~i~ki~~e~~~~v~ql~~l~---~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I------ 693 (1019)
++ ||.+.............+.+.+. .-..+.+..++++.+..++......+. .++...|+.++.....
T Consensus 275 rV-wDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v--~~n~LfYvkd~~i~~~d~~t~~ 351 (1202)
T KOG0292|consen 275 RV-WDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAV--NGNGLFYVKDRFIRSYDLRTQK 351 (1202)
T ss_pred EE-EecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEE--cCCEEEEEccceEEeeeccccc
Confidence 66 55554444433322222222221 122344555666666666532221111 1222223332211111
Q ss_pred -------c-----CCceEEEEecCCccHHHHHh
Q psy307 694 -------K-----NGSVLRLAFSASKTADDILS 714 (1019)
Q Consensus 694 -------~-----ng~Vl~LafSPd~~a~~Ilt 714 (1019)
+ ..++..++++|..++-.|.+
T Consensus 352 d~~v~~lr~~g~~~~~~~smsYNpae~~vlics 384 (1202)
T KOG0292|consen 352 DTAVASLRRPGTLWQPPRSLSYNPAENAVLICS 384 (1202)
T ss_pred cceeEeccCCCcccCCcceeeeccccCeEEEEe
Confidence 1 34677888999886655553
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-25 Score=230.51 Aligned_cols=323 Identities=15% Similarity=0.163 Sum_probs=245.1
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
+.+|..|+++|.+++.+| +.++++||+.|..-.||++ +++.....+.+|+..|+++.|+.+| .+
T Consensus 57 ~~tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~-~~ge~~~eltgHKDSVt~~~Fshdg--------------tl 120 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDI-STGEFAGELTGHKDSVTCCSFSHDG--------------TL 120 (399)
T ss_pred eeehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEc-cCCcceeEecCCCCceEEEEEccCc--------------eE
Confidence 678999999999999999 6899999999999999999 5556888999999999999999999 69
Q ss_pred EEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEec
Q psy307 408 LLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHP 487 (1019)
Q Consensus 408 L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p 487 (1019)
|++|..+|.|+||+. .++.....+...-..|.=+.|+|.+..|+.|+.||.|-+|.+..+...+.+.+
T Consensus 121 LATGdmsG~v~v~~~-stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G----------- 188 (399)
T KOG0296|consen 121 LATGDMSGKVLVFKV-STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG----------- 188 (399)
T ss_pred EEecCCCccEEEEEc-ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecC-----------
Confidence 999999999999999 45555555556667788889999999999999999999999988655555543
Q ss_pred CCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCC
Q psy307 488 DEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM 567 (1019)
Q Consensus 488 ~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg 567 (1019)
+..++++=.|.|+|+.++++..||+|++|+..++.++ ..+.+.. .....++.++..+
T Consensus 189 -------------------h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~---~~~~~~e-~~~~~~~~~~~~~ 245 (399)
T KOG0296|consen 189 -------------------HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPL---HKITQAE-GLELPCISLNLAG 245 (399)
T ss_pred -------------------CCCCcccccccCCCceEEEEecCceEEEEecCCCcee---EEecccc-cCcCCcccccccc
Confidence 3345666678899999999999999999999998544 3333222 2557789999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeeeee--------ccCCCEEEEE---EcCCCCcEEEEEeCCCcEEEEeccce-eeeee
Q psy307 568 SYLISGDADGKCYIWDWKTTKLFKKWK--------AHDGVCISTL---WHPHEPSKVVTAGWDAATAKVQDANI-VKIAV 635 (1019)
Q Consensus 568 ~~Lasgs~DG~I~IWDl~t~~~l~~l~--------~h~~~V~sl~---~sp~~~~~l~s~s~Dg~I~iwwd~~i-~ki~~ 635 (1019)
..++.|+.+|.+++-+..+|+.+.... .+...+.++. |+..- .+.++|+-||+|.+|..... .+...
T Consensus 246 ~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l-pL~A~G~vdG~i~iyD~a~~~~R~~c 324 (399)
T KOG0296|consen 246 STLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL-PLAACGSVDGTIAIYDLAASTLRHIC 324 (399)
T ss_pred ceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccccc-chhhcccccceEEEEecccchhheec
Confidence 999999999999999999999887776 3444444444 55444 37899999999977633221 12222
Q ss_pred eccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccc-----cCCceEEEEecCCccHH
Q psy307 636 EMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEI-----KNGSVLRLAFSASKTAD 710 (1019)
Q Consensus 636 e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I-----~ng~Vl~LafSPd~~a~ 710 (1019)
+++..+.++.-++....+.+..+. ....|..+.+... |+..|++++++|++ +
T Consensus 325 ~he~~V~~l~w~~t~~l~t~c~~g---------------------~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~--~ 381 (399)
T KOG0296|consen 325 EHEDGVTKLKWLNTDYLLTACANG---------------------KVRQWDARTGQLKFTYTGHQMGILDFALSPQK--R 381 (399)
T ss_pred cCCCceEEEEEcCcchheeeccCc---------------------eEEeeeccccceEEEEecCchheeEEEEcCCC--c
Confidence 333333344333322222323233 3333333333332 78899999999998 8
Q ss_pred HHHhhcCCCchhhHH
Q psy307 711 DILSKLSDKNASLEE 725 (1019)
Q Consensus 711 ~Ilt~~~d~~i~lw~ 725 (1019)
+|++++.|++.++++
T Consensus 382 ~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 382 LVVTVSDDNTALVFE 396 (399)
T ss_pred EEEEecCCCeEEEEe
Confidence 999999999988765
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-24 Score=251.59 Aligned_cols=255 Identities=15% Similarity=0.191 Sum_probs=191.6
Q ss_pred CCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-------EEEEEec
Q psy307 304 PPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-------RCVRTYY 376 (1019)
Q Consensus 304 ~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-------~~~~~~~ 376 (1019)
|+.++.+++|+... ...+..+.+|.+.|.+++|+|+.+.+|+||+.||+|+|||+.... .++..+.
T Consensus 50 GG~~gvI~L~~~~r-------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~ 122 (568)
T PTZ00420 50 GGLIGAIRLENQMR-------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK 122 (568)
T ss_pred CCceeEEEeeecCC-------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee
Confidence 55678889987542 235788999999999999999778899999999999999996432 2345678
Q ss_pred ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc
Q psy307 377 GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY 456 (1019)
Q Consensus 377 gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~ 456 (1019)
+|...|.+++|+|++. .+|++++.|++|+|||+... .....+. |...|.+++|+|+|..|++++.
T Consensus 123 gH~~~V~sVaf~P~g~-------------~iLaSgS~DgtIrIWDl~tg-~~~~~i~-~~~~V~SlswspdG~lLat~s~ 187 (568)
T PTZ00420 123 GHKKKISIIDWNPMNY-------------YIMCSSGFDSFVNIWDIENE-KRAFQIN-MPKKLSSLKWNIKGNLLSGTCV 187 (568)
T ss_pred cCCCcEEEEEECCCCC-------------eEEEEEeCCCeEEEEECCCC-cEEEEEe-cCCcEEEEEECCCCCEEEEEec
Confidence 9999999999998873 46789999999999999544 4444444 5678999999999999999999
Q ss_pred CCeEEEEECCCCceEEEEecCCc-eEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC----e
Q psy307 457 DRYLKLWDTESGECISRFTSRKV-AYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN----K 531 (1019)
Q Consensus 457 Dg~I~lWDl~t~~~i~~~~~~~~-v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg----~ 531 (1019)
|++|+|||+++++.+.++..+.. +.+.. +....+++++.+|++++.|+ +
T Consensus 188 D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~--------------------------v~~~~fs~d~~~IlTtG~d~~~~R~ 241 (568)
T PTZ00420 188 GKHMHIIDPRKQEIASSFHIHDGGKNTKN--------------------------IWIDGLGGDDNYILSTGFSKNNMRE 241 (568)
T ss_pred CCEEEEEECCCCcEEEEEecccCCceeEE--------------------------EEeeeEcCCCCEEEEEEcCCCCccE
Confidence 99999999999998887765432 11111 11234568888999988774 7
Q ss_pred EEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee--ccCCCEEEEEEcCCC
Q psy307 532 ILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK--AHDGVCISTLWHPHE 609 (1019)
Q Consensus 532 I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~--~h~~~V~sl~~sp~~ 609 (1019)
|+|||+++... .+.....+...+.+......++|.++++|+.|+.|++|++..+.. ..+. .+..++.+++|.|..
T Consensus 242 VkLWDlr~~~~--pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 242 MKLWDLKNTTS--ALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEECCCCCC--ceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 99999986432 233333333224444444456799999999999999999987643 2222 255678899999965
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-25 Score=224.91 Aligned_cols=269 Identities=21% Similarity=0.353 Sum_probs=220.0
Q ss_pred CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE-EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe
Q psy307 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV-RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS 412 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~-~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs 412 (1019)
..+.|.+|+|||....+++.||.||+||+|++...+..+ +....|.++|.+++|+.|| ..+++|+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg--------------skVf~g~ 91 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG--------------SKVFSGG 91 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC--------------ceEEeec
Confidence 356899999999767788899999999999997654333 3456799999999999999 6899999
Q ss_pred CCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCC--EEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEe----
Q psy307 413 MDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT--NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFH---- 486 (1019)
Q Consensus 413 ~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~--~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~---- 486 (1019)
.|+.+++||+..+ ....+..|.++|.++.|-+... .|++||.|++|+.||++...++.++..+..++++..-
T Consensus 92 ~Dk~~k~wDL~S~--Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~ 169 (347)
T KOG0647|consen 92 CDKQAKLWDLASG--QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMA 169 (347)
T ss_pred cCCceEEEEccCC--CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCcee
Confidence 9999999999444 5667788999999999988766 6999999999999999999999999888777765432
Q ss_pred ----cCCCeeee---ccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccc----
Q psy307 487 ----PDEDKQHL---DIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVA---- 555 (1019)
Q Consensus 487 ----p~~~~~~~---~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~---- 555 (1019)
.+....++ .-+...+.+..+....+.+++..++....+.|+-+|.+.|..+..+.. ..-.+|+.|...
T Consensus 170 vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~ 248 (347)
T KOG0647|consen 170 VVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVN 248 (347)
T ss_pred EEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCC
Confidence 12222222 223445566667778899999999999999999999999999887533 344566777631
Q ss_pred ---cceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCC
Q psy307 556 ---GYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619 (1019)
Q Consensus 556 ---~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~D 619 (1019)
-.|++|+|+|.-..|++.++||++.+||-.....+.+.+.|..+|+++.|+.+|.-+..+.|.|
T Consensus 249 ~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 249 DDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred CceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 2478899999999999999999999999998888999999999999999999997666666766
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.6e-25 Score=258.34 Aligned_cols=295 Identities=22% Similarity=0.325 Sum_probs=237.2
Q ss_pred cccceecccCCCCCCCCeeeeCC--CCCceeeecCCCCCCc-----cCCccceeeeccCCCCeEEEEEcCCCCcEEEEee
Q psy307 283 EEKTILHIKDPTDYQGRSFLHPP--HDVGTNLRSDTPPDRC-----FLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCS 355 (1019)
Q Consensus 283 ~~~~~~~~~~~~~~~gr~~~~~~--~D~~v~lw~~~~~~~~-----~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs 355 (1019)
.+++||.+. -.++|..+++++ .|+++++|+..+-..+ ..-++++.+...|.+.|+|+.|+|| |.+||+||
T Consensus 12 ~~~~IfSId--v~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d-G~~lAsGS 88 (942)
T KOG0973|consen 12 NEKSIFSID--VHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPD-GSYLASGS 88 (942)
T ss_pred CCeeEEEEE--ecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCC-CCeEeecc
Confidence 344565554 467899999999 8999999987653322 1125678899999999999999996 99999999
Q ss_pred CCCeEEEEecCC-----------------CcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEE
Q psy307 356 MDCRVKLWEVYK-----------------ERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVK 418 (1019)
Q Consensus 356 ~Dg~I~IWdl~~-----------------~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~ 418 (1019)
.|+.|.||.... ..+++..+.+|...|.+++|+|++ .+|++++.|++|.
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~--------------~~lvS~s~DnsVi 154 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD--------------SLLVSVSLDNSVI 154 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc--------------cEEEEecccceEE
Confidence 999999999751 124778899999999999999998 6999999999999
Q ss_pred EEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCC
Q psy307 419 LWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPV 498 (1019)
Q Consensus 419 IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~ 498 (1019)
||+..+. ..+..+.+|.+.|..+.|.|-|++|+|-+.|++|+||++.+..+.+.+..+-.
T Consensus 155 iwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~------------------- 214 (942)
T KOG0973|consen 155 IWNAKTF-ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE------------------- 214 (942)
T ss_pred EEccccc-eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh-------------------
Confidence 9999666 99999999999999999999999999999999999999877666666543210
Q ss_pred CceeeeCCCCCcccEEEEcCCCCEEEEEec----CCeEEEEEccCcccccceeEEeccccccceEEEEEcCC--------
Q psy307 499 DMKYIADPTMHSMPAVTSSPNNKWLACQSM----DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPD-------- 566 (1019)
Q Consensus 499 ~~~~i~~~~~~~i~~v~~spdg~~Lasgs~----Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspd-------- 566 (1019)
..+...-...+.|||||++|++... -..+.|.+-.+. ..-..+-||. +++.++.|+|.
T Consensus 215 -----~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tW---k~~~~LvGH~--~p~evvrFnP~lfe~~~~n 284 (942)
T KOG0973|consen 215 -----ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTW---KVDKDLVGHS--APVEVVRFNPKLFERNNKN 284 (942)
T ss_pred -----hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCc---eeeeeeecCC--CceEEEEeChHHhcccccc
Confidence 0111223456889999999988632 236777776443 4457788998 68999999981
Q ss_pred -----CC----EEEEEeCCCeEEEEeCCCCceeeeee-ccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 567 -----MS----YLISGDADGKCYIWDWKTTKLFKKWK-AHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 567 -----g~----~Lasgs~DG~I~IWDl~t~~~l~~l~-~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+. .+|+|+.|++|.||.....+++..+. -....|.+++|+||| ..|+.||.||+|..+
T Consensus 285 g~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG-~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 285 GTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDG-FSLFACSLDGTVALI 352 (942)
T ss_pred CCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCC-CeEEEEecCCeEEEE
Confidence 11 67899999999999998888776553 234689999999999 799999999999876
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=255.94 Aligned_cols=264 Identities=22% Similarity=0.387 Sum_probs=226.3
Q ss_pred CCeeeeCCCCCceeeecCCCCCCccCCccceee-eccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec
Q psy307 298 GRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHT-WEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY 376 (1019)
Q Consensus 298 gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~-l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~ 376 (1019)
++.+.++..|..+++|+.. ++..+.+ +.||.+.|.++++.. ++.+|++|+.|.++++||+ ..+.|.+++.
T Consensus 218 ~~~~~~~s~~~tl~~~~~~-------~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~-~sg~C~~~l~ 288 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLN-------NGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDC-STGECTHSLQ 288 (537)
T ss_pred cCeEEecCCCceeEEeecc-------cceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEec-CCCcEEEEec
Confidence 6678899999999999766 3455666 999999999999977 6889999999999999997 8889999999
Q ss_pred ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc
Q psy307 377 GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY 456 (1019)
Q Consensus 377 gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~ 456 (1019)
||...|.++...+ .++++|+.|.+|++|++ +.+.++..+.+|.++|.++..+ +.++++|++
T Consensus 289 gh~stv~~~~~~~----------------~~~~sgs~D~tVkVW~v-~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~ 349 (537)
T KOG0274|consen 289 GHTSSVRCLTIDP----------------FLLVSGSRDNTVKVWDV-TNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY 349 (537)
T ss_pred CCCceEEEEEccC----------------ceEeeccCCceEEEEec-cCcceEEEeccccccEEEEEec--CCEEEEEec
Confidence 9999999997765 46888999999999999 6888999999999999999997 789999999
Q ss_pred CCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEE
Q psy307 457 DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFS 536 (1019)
Q Consensus 457 Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd 536 (1019)
|++|++||+.+++++.++.++. +.|.++.+.+. ..+++|+.|++|++||
T Consensus 350 d~~v~VW~~~~~~cl~sl~gH~------------------------------~~V~sl~~~~~-~~~~Sgs~D~~IkvWd 398 (537)
T KOG0274|consen 350 DGTVKVWDPRTGKCLKSLSGHT------------------------------GRVYSLIVDSE-NRLLSGSLDTTIKVWD 398 (537)
T ss_pred CceEEEEEhhhceeeeeecCCc------------------------------ceEEEEEecCc-ceEEeeeeccceEeec
Confidence 9999999999999999887653 34444544443 7899999999999999
Q ss_pred ccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec-cCCCEEEEEEcCCCCcEEEE
Q psy307 537 ALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA-HDGVCISTLWHPHEPSKVVT 615 (1019)
Q Consensus 537 ~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~-h~~~V~sl~~sp~~~~~l~s 615 (1019)
+.+.. .++.++.+|. ..+.++.+ .+++|++++.||+|++||..++++++++.+ |.+.|..+++. ...+++
T Consensus 399 l~~~~--~c~~tl~~h~--~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~ 469 (537)
T KOG0274|consen 399 LRTKR--KCIHTLQGHT--SLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILC 469 (537)
T ss_pred CCchh--hhhhhhcCCc--cccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEE
Confidence 99863 5668888887 55554444 788999999999999999999999999998 67889999886 247999
Q ss_pred EeCCCcEEEEeccce
Q psy307 616 AGWDAATAKVQDANI 630 (1019)
Q Consensus 616 ~s~Dg~I~iwwd~~i 630 (1019)
++.||++.+| |...
T Consensus 470 s~~~~~~~l~-dl~~ 483 (537)
T KOG0274|consen 470 SSDDGSVKLW-DLRS 483 (537)
T ss_pred EecCCeeEEE-eccc
Confidence 9999999776 4443
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-25 Score=226.92 Aligned_cols=291 Identities=20% Similarity=0.235 Sum_probs=213.7
Q ss_pred EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCE
Q psy307 371 CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTN 450 (1019)
Q Consensus 371 ~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~ 450 (1019)
++..+.+|.+.|..+.|+|+| .+|+||+.|..|.+|++....+-...+++|+++|..+.|.+|++.
T Consensus 39 p~m~l~gh~geI~~~~F~P~g--------------s~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~ 104 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDG--------------SCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSH 104 (338)
T ss_pred hhhhcCCCcceEEEEEECCCC--------------CeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCE
Confidence 345678999999999999999 699999999999999997778888899999999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC
Q psy307 451 FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN 530 (1019)
Q Consensus 451 l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg 530 (1019)
++|+|.|++|+.||+++|+++..+..+..+....- |... .-.++.+++.|+
T Consensus 105 i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~-p~rr----------------------------g~~lv~SgsdD~ 155 (338)
T KOG0265|consen 105 ILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD-PSRR----------------------------GPQLVCSGSDDG 155 (338)
T ss_pred EEEecCCceEEEEecccceeeehhccccceeeecC-cccc----------------------------CCeEEEecCCCc
Confidence 99999999999999999999999887654332211 2211 235677889999
Q ss_pred eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCC
Q psy307 531 KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEP 610 (1019)
Q Consensus 531 ~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~ 610 (1019)
++++||++.+. .++++... -.++++.|..++..+.+|+-|+.|++||++.+..+.++.+|..+|+++..+|.|
T Consensus 156 t~kl~D~R~k~---~~~t~~~k---yqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~g- 228 (338)
T KOG0265|consen 156 TLKLWDIRKKE---AIKTFENK---YQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYG- 228 (338)
T ss_pred eEEEEeecccc---hhhccccc---eeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCC-
Confidence 99999999773 34454332 458899999999999999999999999999999999999999999999999998
Q ss_pred cEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEecccc
Q psy307 611 SKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNR 690 (1019)
Q Consensus 611 ~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~ 690 (1019)
..+.+-+.|.++++|.-+... +..+.+...+.-...--...+-..|+-. ..+...-+.+...-+|....+
T Consensus 229 s~llsnsMd~tvrvwd~rp~~--------p~~R~v~if~g~~hnfeknlL~cswsp~--~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 229 SFLLSNSMDNTVRVWDVRPFA--------PSQRCVKIFQGHIHNFEKNLLKCSWSPN--GTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred CccccccccceEEEEEecccC--------CCCceEEEeecchhhhhhhcceeeccCC--CCccccccccceEEEeecccc
Confidence 699999999999877332211 0001111100000000011111223322 111111111122223333333
Q ss_pred ccc-----cCCceEEEEecCCccHHHHHhhcCCCchhh
Q psy307 691 NEI-----KNGSVLRLAFSASKTADDILSKLSDKNASL 723 (1019)
Q Consensus 691 ~~I-----~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~l 723 (1019)
..+ |.|+|.+++|+|.. +.|+++..|++|-|
T Consensus 299 ~~lyklpGh~gsvn~~~Fhp~e--~iils~~sdk~i~l 334 (338)
T KOG0265|consen 299 RILYKLPGHYGSVNEVDFHPTE--PIILSCSSDKTIYL 334 (338)
T ss_pred cEEEEcCCcceeEEEeeecCCC--cEEEEeccCceeEe
Confidence 332 79999999999999 88999999998754
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-25 Score=240.07 Aligned_cols=310 Identities=19% Similarity=0.290 Sum_probs=222.1
Q ss_pred cCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEe----cccCccEeEEEEcCCCCceeEE
Q psy307 322 FLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTY----YGHRQAVRDICFNNTGTNFISA 397 (1019)
Q Consensus 322 ~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~----~gh~~~V~~i~fspdg~~~vs~ 397 (1019)
.+|..+-..+++|+..|+++++.| .|-.|+|||.|.+|++||+..-....+.+ ......|++++|++.|
T Consensus 154 ~IP~shEi~l~hgtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg------ 226 (641)
T KOG0772|consen 154 LIPGSHEIQLKHGTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG------ 226 (641)
T ss_pred cCCccceEeccCCceEEEEeeecC-CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC------
Confidence 467777889999999999999999 58999999999999999995432222222 2334568888888887
Q ss_pred EeecCCCCcEEEEEeCCCcEEEEEccCCCeEE------------EEEccccccEeEEEEecCCC-EEEEEEcCCeEEEEE
Q psy307 398 IRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCV------------RTYYGHRQAVRDICFNNTGT-NFISAGYDRYLKLWD 464 (1019)
Q Consensus 398 i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~------------~~l~~H~~~V~sl~fspdg~-~l~S~s~Dg~I~lWD 464 (1019)
..|++.+....++|+|- .+.... ...+||...++|.+|+|+.+ .|+++++||+++|||
T Consensus 227 --------~~iLvvsg~aqakl~DR-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWd 297 (641)
T KOG0772|consen 227 --------DQILVVSGSAQAKLLDR-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWD 297 (641)
T ss_pred --------CeEEEEecCcceeEEcc-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEe
Confidence 57777778888899986 222222 23468999999999999865 599999999999999
Q ss_pred CCCCce-EEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccc
Q psy307 465 TESGEC-ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKL 543 (1019)
Q Consensus 465 l~t~~~-i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~ 543 (1019)
+...+. +..+... ......-.++.++|+|+|++||+|+.||.|.+|+..+...-
T Consensus 298 v~~~k~q~qVik~k-------------------------~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~ 352 (641)
T KOG0772|consen 298 VNNTKSQLQVIKTK-------------------------PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR 352 (641)
T ss_pred cCCchhheeEEeec-------------------------cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc
Confidence 976542 2222211 01123345778999999999999999999999998765544
Q ss_pred cceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeeeeeccC--CCEEEEEEcCCCCcEEEEEeCCC
Q psy307 544 NRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTT-KLFKKWKAHD--GVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 544 ~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~-~~l~~l~~h~--~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
.....-..|..+..|+||.||+||++|++-+.|+++++||++.. +++.+..+-. -+-+.++|+|+. .+|+||..--
T Consensus 353 p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~ 431 (641)
T KOG0772|consen 353 PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAP 431 (641)
T ss_pred cceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCc-eEEEeccccc
Confidence 44555567876668999999999999999999999999999875 4555554322 245789999998 5777765310
Q ss_pred cEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEE
Q psy307 621 ATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLR 700 (1019)
Q Consensus 621 ~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~ 700 (1019)
. +... + .++.|...... ...+-.+.+.+|.+
T Consensus 432 ~-----------------~~~~--------------------------g--~L~f~d~~t~d----~v~ki~i~~aSvv~ 462 (641)
T KOG0772|consen 432 N-----------------GMTA--------------------------G--TLFFFDRMTLD----TVYKIDISTASVVR 462 (641)
T ss_pred C-----------------CCCC--------------------------c--eEEEEecccee----eEEEecCCCceEEE
Confidence 0 0000 0 01111111100 00111244788999
Q ss_pred EEecCCccHHHHHhhcCCCchhhH
Q psy307 701 LAFSASKTADDILSKLSDKNASLE 724 (1019)
Q Consensus 701 LafSPd~~a~~Ilt~~~d~~i~lw 724 (1019)
+.|+|.- ++|+.++.||++.+.
T Consensus 463 ~~WhpkL--NQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 463 CLWHPKL--NQIFAGSGDGTAHVY 484 (641)
T ss_pred Eeecchh--hheeeecCCCceEEE
Confidence 9999999 889999999998654
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-25 Score=225.46 Aligned_cols=257 Identities=22% Similarity=0.366 Sum_probs=209.4
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC-----------------CcEEEEEecccCccEeEEEEc
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-----------------ERRCVRTYYGHRQAVRDICFN 388 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~-----------------~~~~~~~~~gh~~~V~~i~fs 388 (1019)
-.-..+..|++++.+.+|+|| |.++++||.|..|+|.|+.. ....++++..|...|+++.|+
T Consensus 103 yEt~ylt~HK~~cR~aafs~D-G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPD-GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred cceEEEeecccceeeeeeCCC-CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence 345568899999999999996 89999999999999999851 125789999999999999999
Q ss_pred CCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC-eEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCC
Q psy307 389 NTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH-RCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTES 467 (1019)
Q Consensus 389 pdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t 467 (1019)
|.. .+|++|+.|++|+++|+.... +..........+|.+|.|+|.|.+++.|....++++||+++
T Consensus 182 Pre--------------~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T 247 (430)
T KOG0640|consen 182 PRE--------------TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT 247 (430)
T ss_pred chh--------------heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc
Confidence 988 699999999999999994332 11111223456899999999999999999999999999998
Q ss_pred CceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCccccccee
Q psy307 468 GECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKK 547 (1019)
Q Consensus 468 ~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~ 547 (1019)
-+|...- +|+ +.+...|+++.+++.|++.+++|.||.|++||--+.. ++.
T Consensus 248 ~Qcfvsa-----------nPd----------------~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r---Cv~ 297 (430)
T KOG0640|consen 248 YQCFVSA-----------NPD----------------DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR---CVR 297 (430)
T ss_pred eeEeeec-----------Ccc----------------cccccceeEEEecCCccEEEEeccCCcEEeeccccHH---HHH
Confidence 8774322 233 3466789999999999999999999999999987763 444
Q ss_pred EEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee---------------------------------
Q psy307 548 TFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK--------------------------------- 594 (1019)
Q Consensus 548 ~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~--------------------------------- 594 (1019)
++.....+..|++..|+.+|+|+++.+.|..+++|.+.+++++..+.
T Consensus 298 t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~sl 377 (430)
T KOG0640|consen 298 TIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSL 377 (430)
T ss_pred HHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCce
Confidence 55443345779999999999999999999999999998877655432
Q ss_pred ----------------ccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEecc
Q psy307 595 ----------------AHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDA 628 (1019)
Q Consensus 595 ----------------~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~ 628 (1019)
+|.+.|..+.-+|.++ -++|||.|-+++.|+..
T Consensus 378 csWdaRtadr~~l~slgHn~a~R~i~HSP~~p-~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 378 CSWDARTADRVALLSLGHNGAVRWIVHSPVEP-AFMTCSDDFRARFWYRR 426 (430)
T ss_pred eeccccchhhhhhcccCCCCCceEEEeCCCCC-ceeeecccceeeeeeec
Confidence 3667788888888884 78999999999888654
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.4e-25 Score=252.77 Aligned_cols=250 Identities=21% Similarity=0.352 Sum_probs=198.5
Q ss_pred ceeeec-cCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC--------------------------------C-----
Q psy307 327 QVHTWE-GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK--------------------------------E----- 368 (1019)
Q Consensus 327 ~i~~l~-gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~--------------------------------~----- 368 (1019)
..+.+. +|.++|+++.|++| |++||+||.||.|+||.+.. .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~D-GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHD-GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EeeccccccCCcEEEEEeCCC-CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 344566 89999999999996 99999999999999998744 0
Q ss_pred ----------------------cEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC
Q psy307 369 ----------------------RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH 426 (1019)
Q Consensus 369 ----------------------~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~ 426 (1019)
.++++.+.||.+.|.+|.|+.++ +|+++|.|.+|++|++ ...
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---------------fLLSSSMDKTVRLWh~-~~~ 400 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---------------FLLSSSMDKTVRLWHP-GRK 400 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccCC---------------eeEeccccccEEeecC-CCc
Confidence 02345677899999999999875 8999999999999999 566
Q ss_pred eEEEEEccccccEeEEEEec-CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeC
Q psy307 427 RCVRTYYGHRQAVRDICFNN-TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIAD 505 (1019)
Q Consensus 427 ~~~~~l~~H~~~V~sl~fsp-dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~ 505 (1019)
.|+..+ .|...|+||+|+| |.++|+|||-||.|+||++...+.+.-...+
T Consensus 401 ~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~---------------------------- 451 (712)
T KOG0283|consen 401 ECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR---------------------------- 451 (712)
T ss_pred ceeeEE-ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh----------------------------
Confidence 676665 5999999999999 6788999999999999999776654433322
Q ss_pred CCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEecc---c-cccceEEEEEcCCC-CEEEEEeCCCeEE
Q psy307 506 PTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGH---M-VAGYACSLDFSPDM-SYLISGDADGKCY 580 (1019)
Q Consensus 506 ~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh---~-~~~~V~~v~fspdg-~~Lasgs~DG~I~ 580 (1019)
.-|+++++.|+|++.++|+.+|.+++|++.+....... .+..| . ....|+.+.|.|.. ..|++.+.|..|+
T Consensus 452 ---~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~-~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIR 527 (712)
T KOG0283|consen 452 ---DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF-HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIR 527 (712)
T ss_pred ---hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee-eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceE
Confidence 45778888999999999999999999999765322111 11111 0 11359999999844 3577788999999
Q ss_pred EEeCCCCceeeeeeccCC--CEEEEEEcCCCCcEEEEEeCCCcEEEEec
Q psy307 581 IWDWKTTKLFKKWKAHDG--VCISTLWHPHEPSKVVTAGWDAATAKVQD 627 (1019)
Q Consensus 581 IWDl~t~~~l~~l~~h~~--~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd 627 (1019)
|+|.++..++..++++.. .-+...|+.+| .+|++++.|..|++|..
T Consensus 528 I~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dg-k~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 528 IYDGRDKDLVHKFKGFRNTSSQISASFSSDG-KHIVSASEDSWVYIWKN 575 (712)
T ss_pred EEeccchhhhhhhcccccCCcceeeeEccCC-CEEEEeecCceEEEEeC
Confidence 999999999999997643 34677899988 79999999999988753
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=229.62 Aligned_cols=263 Identities=20% Similarity=0.349 Sum_probs=203.3
Q ss_pred cCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe
Q psy307 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS 412 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs 412 (1019)
.|.+.|.+|... +..++||+.||.++|||. .+++..++.||.++|.+++|..... ....+++++
T Consensus 103 ~hdDWVSsv~~~---~~~IltgsYDg~~riWd~--~Gk~~~~~~Ght~~ik~v~~v~~n~-----------~~~~fvsas 166 (423)
T KOG0313|consen 103 LHDDWVSSVKGA---SKWILTGSYDGTSRIWDL--KGKSIKTIVGHTGPIKSVAWVIKNS-----------SSCLFVSAS 166 (423)
T ss_pred cchhhhhhhccc---CceEEEeecCCeeEEEec--CCceEEEEecCCcceeeeEEEecCC-----------ccceEEEec
Confidence 388899999876 458999999999999996 5688999999999999888765431 114799999
Q ss_pred CCCcEEEEEccCCCe---EEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCC
Q psy307 413 MDCRVKLWEVYKEHR---CVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDE 489 (1019)
Q Consensus 413 ~Dg~I~IWDl~~~~~---~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~ 489 (1019)
.|.++++|.+..... ++....||...|-++...++|.+|++||.|.+|+||+..+. ....++.... -+..
T Consensus 167 ~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~-~~~~~E~~s~------~rrk 239 (423)
T KOG0313|consen 167 MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETD-EEDELESSSN------RRRK 239 (423)
T ss_pred CCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCC-ccccccccch------hhhh
Confidence 999999999855432 33444599999999999999999999999999999993321 1111111000 0000
Q ss_pred Cee--eeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCC
Q psy307 490 DKQ--HLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM 567 (1019)
Q Consensus 490 ~~~--~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg 567 (1019)
... -.............|..+|.++.|++ ...+++++.|.+|+.||+..+.. +.++.+. ..+.++..+|..
T Consensus 240 ~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~---~~~~~~~---ksl~~i~~~~~~ 312 (423)
T KOG0313|consen 240 KQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL---KSTLTTN---KSLNCISYSPLS 312 (423)
T ss_pred hhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccc---eeeeecC---cceeEeeccccc
Confidence 000 00111223445677889999999998 67889999999999999998733 3444443 458899999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCc---eeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 568 SYLISGDADGKCYIWDWKTTK---LFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 568 ~~Lasgs~DG~I~IWDl~t~~---~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.+|++|+.|..|++||.+++. ...++.+|.+.|.++.|+|.....+++++.||++++|
T Consensus 313 ~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klW 373 (423)
T KOG0313|consen 313 KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLW 373 (423)
T ss_pred ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEE
Confidence 999999999999999998763 4567889999999999999999999999999999776
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-25 Score=231.99 Aligned_cols=266 Identities=18% Similarity=0.286 Sum_probs=215.3
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.++..|+++++++.|.+..+|....... .+..+++.||..+|..|.|||| .++|++|+.|..+++||+. .+.+.
T Consensus 231 ~FS~nGkyLAsaSkD~Taiiw~v~~d~~----~kl~~tlvgh~~~V~yi~wSPD-dryLlaCg~~e~~~lwDv~-tgd~~ 304 (519)
T KOG0293|consen 231 QFSHNGKYLASASKDSTAIIWIVVYDVH----FKLKKTLVGHSQPVSYIMWSPD-DRYLLACGFDEVLSLWDVD-TGDLR 304 (519)
T ss_pred EEcCCCeeEeeccCCceEEEEEEecCcc----eeeeeeeecccCceEEEEECCC-CCeEEecCchHheeeccCC-cchhh
Confidence 3789999999999999999998875443 5778999999999999999997 7789999999999999994 44555
Q ss_pred EEec-ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccc-cccEeEEEEecCCCE
Q psy307 373 RTYY-GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGH-RQAVRDICFNNTGTN 450 (1019)
Q Consensus 373 ~~~~-gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H-~~~V~sl~fspdg~~ 450 (1019)
+.+. +|...+.+++|.||| ..+++|+.|+.|..||+ .+.......+- ...|.+++.++||++
T Consensus 305 ~~y~~~~~~S~~sc~W~pDg--------------~~~V~Gs~dr~i~~wdl--Dgn~~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 305 HLYPSGLGFSVSSCAWCPDG--------------FRFVTGSPDRTIIMWDL--DGNILGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred hhcccCcCCCcceeEEccCC--------------ceeEecCCCCcEEEecC--CcchhhcccccccceeEEEEEcCCCcE
Confidence 4443 456788899999988 57999999999999998 33334444443 256999999999999
Q ss_pred EEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCC-------------CCcccEEEEc
Q psy307 451 FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPT-------------MHSMPAVTSS 517 (1019)
Q Consensus 451 l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~-------------~~~i~~v~~s 517 (1019)
+++.+.|..|++++.++......+..+.++.+.+.+.++....+........+++.. .+-+-.-||.
T Consensus 369 vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg 448 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG 448 (519)
T ss_pred EEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC
Confidence 999999999999999998888788888999999999999877775544433333322 2223334444
Q ss_pred -CCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCC-CCEEEEEeCCCeEEEEeCC
Q psy307 518 -PNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPD-MSYLISGDADGKCYIWDWK 585 (1019)
Q Consensus 518 -pdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspd-g~~Lasgs~DG~I~IWDl~ 585 (1019)
.+..++++||.|++|+||+..++ ..+..+.||. ..|++++|+|. -..+|+++.||+|+||-..
T Consensus 449 g~~~~fiaSGSED~kvyIWhr~sg---kll~~LsGHs--~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 449 GGNDKFIASGSEDSKVYIWHRISG---KLLAVLSGHS--KTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCCcceEEecCCCceEEEEEccCC---ceeEeecCCc--ceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 35589999999999999999888 5678999998 77999999995 4578999999999999765
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=218.24 Aligned_cols=287 Identities=22% Similarity=0.300 Sum_probs=224.0
Q ss_pred EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE
Q psy307 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS 453 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S 453 (1019)
.++||..+++.|.++.+| .+|++++.|.++.||-. ..++.+-++.||++.|+|+..+.+.+.+++
T Consensus 5 ~l~GHERplTqiKyN~eG--------------DLlFscaKD~~~~vw~s-~nGerlGty~GHtGavW~~Did~~s~~liT 69 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREG--------------DLLFSCAKDSTPTVWYS-LNGERLGTYDGHTGAVWCCDIDWDSKHLIT 69 (327)
T ss_pred ccccCccccceEEecCCC--------------cEEEEecCCCCceEEEe-cCCceeeeecCCCceEEEEEecCCcceeee
Confidence 367999999999999999 79999999999999986 678889999999999999999999999999
Q ss_pred EEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeee---------------ccC-------C-CceeeeCCCCCc
Q psy307 454 AGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL---------------DIP-------V-DMKYIADPTMHS 510 (1019)
Q Consensus 454 ~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~---------------~~~-------~-~~~~i~~~~~~~ 510 (1019)
|+.|.+++|||+++|+++.++..+..+..+.|++++....+ +++ . ........+...
T Consensus 70 GSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~sk 149 (327)
T KOG0643|consen 70 GSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSK 149 (327)
T ss_pred ccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccc
Confidence 99999999999999999999999999999999999987665 111 1 111222234477
Q ss_pred ccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q psy307 511 MPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLF 590 (1019)
Q Consensus 511 i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l 590 (1019)
++.+-|+|.+++|++|..||.|.+||++++... +..-..|. ..|+.++++||..++++|+.|.+-++||..+-+.+
T Consensus 150 it~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~--v~s~~~h~--~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~ 225 (327)
T KOG0643|consen 150 ITSALWGPLGETIIAGHEDGSISIYDARTGKEL--VDSDEEHS--SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVL 225 (327)
T ss_pred eeeeeecccCCEEEEecCCCcEEEEEcccCcee--eechhhhc--cccccccccCCcceEEecccCccceeeeccceeeE
Confidence 889999999999999999999999999987543 34444454 56999999999999999999999999999999999
Q ss_pred eeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCc
Q psy307 591 KKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSE 670 (1019)
Q Consensus 591 ~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e 670 (1019)
+++.. ..+|++.+++|.....++.||.+..=+---.. +.-.|. ..
T Consensus 226 Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~--------------r~GKFE--------------------Ar 270 (327)
T KOG0643|consen 226 KTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTST--------------RAGKFE--------------------AR 270 (327)
T ss_pred EEeee-cccccceecccccceEEecCCceeeeeeeecc--------------cccchh--------------------hh
Confidence 99875 45899999999875444444433211000000 000000 00
Q ss_pred eeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCchhhH
Q psy307 671 QYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNASLE 724 (1019)
Q Consensus 671 ~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw 724 (1019)
-|.+. +..+-.|.+-|=|||+.++|+|++ +...+|..||.||+-
T Consensus 271 Fyh~i--------~eEEigrvkGHFGPINsvAfhPdG--ksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 271 FYHLI--------FEEEIGRVKGHFGPINSVAFHPDG--KSYSSGGEDGYVRLH 314 (327)
T ss_pred HHHHH--------HHHHhccccccccCcceeEECCCC--cccccCCCCceEEEE
Confidence 01111 111122333478999999999999 889999999999876
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.3e-24 Score=213.10 Aligned_cols=269 Identities=17% Similarity=0.273 Sum_probs=216.2
Q ss_pred eeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE-EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 329 HTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC-VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 329 ~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~-~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
+.+.+|.+.|.+|+|+.+ |..|++|+.|+++++|++...... -..+.+|.+.|-.++|+|..+ .+
T Consensus 14 r~~~~~~~~v~Sv~wn~~-g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-------------d~ 79 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCD-GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-------------DL 79 (313)
T ss_pred HHhhhhhhcceEEEEccc-CceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-------------cc
Confidence 567899999999999995 899999999999999999654221 234678999898888777654 89
Q ss_pred EEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEec
Q psy307 408 LLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHP 487 (1019)
Q Consensus 408 L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p 487 (1019)
+++++.|.+|++||++. ++++.......+.| -+.|+|+|.+++.++.|..|...|.++.+.....+....+.-+.|+-
T Consensus 80 ~atas~dk~ir~wd~r~-~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~ 157 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRS-GKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNN 157 (313)
T ss_pred eEEecCCceEEEEEecc-CcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecC
Confidence 99999999999999954 45555544444444 35899999999999999999999999999988888888888889986
Q ss_pred CCCeeeeccCCCce---------ee--eCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEecccccc
Q psy307 488 DEDKQHLDIPVDMK---------YI--ADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAG 556 (1019)
Q Consensus 488 ~~~~~~~~~~~~~~---------~i--~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~ 556 (1019)
++...++....+.. .+ ...|.....++.|+|+|++||+|+.|..+.+||+..- .+.+.+..+. -
T Consensus 158 ~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL---iC~R~isRld--w 232 (313)
T KOG1407|consen 158 SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL---ICERCISRLD--W 232 (313)
T ss_pred CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh---hhheeecccc--C
Confidence 66655553332221 11 2233444557888999999999999999999999865 4556666665 6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCC
Q psy307 557 YACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 557 ~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
+|..+.||.||++||+|+.|..|-|=++++|..+..++ +.++...++|||.. .+|+-++.|.
T Consensus 233 pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~-~LLAyA~ddk 294 (313)
T KOG1407|consen 233 PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKR-PLLAYACDDK 294 (313)
T ss_pred ceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCC-ceeeEEecCC
Confidence 79999999999999999999999999999999999887 57788999999987 4777776653
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-24 Score=253.30 Aligned_cols=288 Identities=19% Similarity=0.243 Sum_probs=229.3
Q ss_pred CCCCeEEEEEcCCCCcEEEEee--CCCeEEEEecCC-----------CcEEEEEecccCccEeEEEEcCCCCceeEEEee
Q psy307 334 HTKGISAIRWFPKSAHLLLSCS--MDCRVKLWEVYK-----------ERRCVRTYYGHRQAVRDICFNNTGTNFISAIRW 400 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs--~Dg~I~IWdl~~-----------~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~ 400 (1019)
+...|.+|..+|+ +..++||+ .||.++||+... -.+.+.+...|.+.|+|+.|++||
T Consensus 12 ~~~~IfSIdv~pd-g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG--------- 81 (942)
T KOG0973|consen 12 NEKSIFSIDVHPD-GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG--------- 81 (942)
T ss_pred CCeeEEEEEecCC-ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC---------
Confidence 4567899999996 89999999 999999998731 123456778899999999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEEccC------C-----------CeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEE
Q psy307 401 FPKSAHLLLSCSMDCRVKLWEVYK------E-----------HRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLW 463 (1019)
Q Consensus 401 ~p~~~~~L~sgs~Dg~I~IWDl~~------~-----------~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lW 463 (1019)
.+|++||.|+.|.||+... . -+++..+.+|.+.|..++|+|++.+++++|.|++|.||
T Consensus 82 -----~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 82 -----SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIW 156 (942)
T ss_pred -----CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEE
Confidence 7999999999999999852 1 13678899999999999999999999999999999999
Q ss_pred ECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccc
Q psy307 464 DTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKL 543 (1019)
Q Consensus 464 Dl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~ 543 (1019)
|..+.+++.++..+ ...|-.+.|.|-|+|||+.+.|++|+||++.+..
T Consensus 157 n~~tF~~~~vl~~H------------------------------~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~-- 204 (942)
T KOG0973|consen 157 NAKTFELLKVLRGH------------------------------QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG-- 204 (942)
T ss_pred ccccceeeeeeecc------------------------------cccccceEECCccCeeeeecCCceEEEEEcccce--
Confidence 99999887777654 3556778899999999999999999999976632
Q ss_pred cceeEEecc----ccccceEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCC-------
Q psy307 544 NRKKTFEGH----MVAGYACSLDFSPDMSYLISGDA----DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPH------- 608 (1019)
Q Consensus 544 ~~~~~l~gh----~~~~~V~~v~fspdg~~Lasgs~----DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~------- 608 (1019)
..+.+.++ ........+.|||||.+|++.-. -.++.|.+-.+.+.-..+-+|.+++.++.|+|.
T Consensus 205 -i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ 283 (942)
T KOG0973|consen 205 -IEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNK 283 (942)
T ss_pred -eeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccc
Confidence 22332222 23356889999999999998743 347899998888888899999999999999983
Q ss_pred -CC--------cEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecC
Q psy307 609 -EP--------SKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSET 679 (1019)
Q Consensus 609 -~~--------~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~ 679 (1019)
|. ..+|+||.|++|-+|-... +..++..
T Consensus 284 ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~---------------------------------------~RPl~vi---- 320 (942)
T KOG0973|consen 284 NGTSTQPNCYYCIAAVGSQDRSLSVWNTAL---------------------------------------PRPLFVI---- 320 (942)
T ss_pred cCCccCCCcceEEEEEecCCccEEEEecCC---------------------------------------CCchhhh----
Confidence 11 1678888999997772211 1111111
Q ss_pred CCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCchhhHH
Q psy307 680 NNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNASLEE 725 (1019)
Q Consensus 680 ~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~ 725 (1019)
+.+-+.+|.+++||||+ ..|+.++.||+|.+-.
T Consensus 321 -----------~~lf~~SI~DmsWspdG--~~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 321 -----------HNLFNKSIVDMSWSPDG--FSLFACSLDGTVALIH 353 (942)
T ss_pred -----------hhhhcCceeeeeEcCCC--CeEEEEecCCeEEEEE
Confidence 11457789999999999 8899999999985543
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=221.45 Aligned_cols=261 Identities=29% Similarity=0.447 Sum_probs=215.8
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVR 373 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~ 373 (1019)
++++|+.++++..|+.+.+|+.... +....+.+|...+.++.|+|+ +.+|++++.||.|++|++. ..+.+.
T Consensus 17 ~~~~~~~l~~~~~~g~i~i~~~~~~-------~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~~~~-~~~~~~ 87 (289)
T cd00200 17 FSPDGKLLATGSGDGTIKVWDLETG-------ELLRTLKGHTGPVRDVAASAD-GTYLASGSSDKTIRLWDLE-TGECVR 87 (289)
T ss_pred EcCCCCEEEEeecCcEEEEEEeeCC-------CcEEEEecCCcceeEEEECCC-CCEEEEEcCCCeEEEEEcC-cccceE
Confidence 4567899999999999999987632 356788899999999999996 6899999999999999994 445677
Q ss_pred EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE
Q psy307 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS 453 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S 453 (1019)
.+..|...|.++.|++++ .++++++.||.|.+||+ ...+....+..|...|.+++|+|++.++++
T Consensus 88 ~~~~~~~~i~~~~~~~~~--------------~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 152 (289)
T cd00200 88 TLTGHTSYVSSVAFSPDG--------------RILSSSSRDKTIKVWDV-ETGKCLTTLRGHTDWVNSVAFSPDGTFVAS 152 (289)
T ss_pred EEeccCCcEEEEEEcCCC--------------CEEEEecCCCeEEEEEC-CCcEEEEEeccCCCcEEEEEEcCcCCEEEE
Confidence 788898899999999886 68888888999999999 456777788899999999999999888888
Q ss_pred EEcCCeEEEEECCCCceEEEEecCC-ceEEEEEecCCCeeeeccCCCcee-----------eeCCCCCcccEEEEcCCCC
Q psy307 454 AGYDRYLKLWDTESGECISRFTSRK-VAYCVKFHPDEDKQHLDIPVDMKY-----------IADPTMHSMPAVTSSPNNK 521 (1019)
Q Consensus 454 ~s~Dg~I~lWDl~t~~~i~~~~~~~-~v~~v~~~p~~~~~~~~~~~~~~~-----------i~~~~~~~i~~v~~spdg~ 521 (1019)
++.|+.|++||+++++.+..+..+. .+.++.|+|++...++........ ....+...+.+++++|++.
T Consensus 153 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 232 (289)
T cd00200 153 SSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGY 232 (289)
T ss_pred EcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCc
Confidence 8889999999999998888887654 789999999986555432221111 1114455788999999999
Q ss_pred EEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy307 522 WLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWD 583 (1019)
Q Consensus 522 ~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWD 583 (1019)
++++++.||.|++|++.++. ....+.+|. ..+.+++|+|++.+|++++.||.|++|+
T Consensus 233 ~~~~~~~~~~i~i~~~~~~~---~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 233 LLASGSEDGTIRVWDLRTGE---CVQTLSGHT--NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEcCCCcEEEEEcCCce---eEEEccccC--CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99988889999999998753 345555665 6799999999999999999999999996
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-24 Score=221.34 Aligned_cols=293 Identities=17% Similarity=0.314 Sum_probs=230.0
Q ss_pred Cccceeeec-cCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE--------EEecccCccEeEEEEcCCCCce
Q psy307 324 PKTQVHTWE-GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV--------RTYYGHRQAVRDICFNNTGTNF 394 (1019)
Q Consensus 324 p~~~i~~l~-gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~--------~~~~gh~~~V~~i~fspdg~~~ 394 (1019)
|....++++ |...-+-|..|+|| |++|++||.||-|.+||. .+++.. ..+.-+..+|.|++|+.|.
T Consensus 201 Pt~l~r~IKFg~KSh~EcA~FSPD-gqyLvsgSvDGFiEVWny-~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs--- 275 (508)
T KOG0275|consen 201 PTQLARSIKFGQKSHVECARFSPD-GQYLVSGSVDGFIEVWNY-TTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS--- 275 (508)
T ss_pred hHHhhhheecccccchhheeeCCC-CceEeeccccceeeeehh-ccchhhhhhhhhhhcceeecccceEEEeecccH---
Confidence 444444443 45567899999996 899999999999999998 444322 2355678999999999988
Q ss_pred eEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEc-cccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEE
Q psy307 395 ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYY-GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISR 473 (1019)
Q Consensus 395 vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~-~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~ 473 (1019)
..|++|+.||.|++|.+ .++.|++.+. .|+..|+|+.|+.|+..++++|.|.++++.-+.+|+++..
T Consensus 276 -----------EMlAsGsqDGkIKvWri-~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKE 343 (508)
T KOG0275|consen 276 -----------EMLASGSQDGKIKVWRI-ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKE 343 (508)
T ss_pred -----------HHhhccCcCCcEEEEEE-ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHH
Confidence 79999999999999999 6777777776 8999999999999999999999999999999999999988
Q ss_pred EecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccc
Q psy307 474 FTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHM 553 (1019)
Q Consensus 474 ~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~ 553 (1019)
|.++. ..|+...|+++|..+++++.||+|++|+..+.. +..+++...
T Consensus 344 frGHs------------------------------Syvn~a~ft~dG~~iisaSsDgtvkvW~~Ktte---C~~Tfk~~~ 390 (508)
T KOG0275|consen 344 FRGHS------------------------------SYVNEATFTDDGHHIISASSDGTVKVWHGKTTE---CLSTFKPLG 390 (508)
T ss_pred hcCcc------------------------------ccccceEEcCCCCeEEEecCCccEEEecCcchh---hhhhccCCC
Confidence 87654 446667788999999999999999999998874 445555444
Q ss_pred cccceEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeeeeec---cCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccc
Q psy307 554 VAGYACSLDFSPD-MSYLISGDADGKCYIWDWKTTKLFKKWKA---HDGVCISTLWHPHEPSKVVTAGWDAATAKVQDAN 629 (1019)
Q Consensus 554 ~~~~V~~v~fspd-g~~Lasgs~DG~I~IWDl~t~~~l~~l~~---h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~ 629 (1019)
...+|+++-.-|. -..++.+....+|+|.++ .|+.++++.. ..+...+++.+|.| .++.+.|.|+.++.+.
T Consensus 391 ~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkG-ewiYcigED~vlYCF~--- 465 (508)
T KOG0275|consen 391 TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKG-EWIYCIGEDGVLYCFS--- 465 (508)
T ss_pred CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCC-cEEEEEccCcEEEEEE---
Confidence 4567888888774 457888888999999996 5777887753 34567788899998 5999999999875441
Q ss_pred eeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccH
Q psy307 630 IVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTA 709 (1019)
Q Consensus 630 i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a 709 (1019)
+..+.-..... +|...|..++-+|..
T Consensus 466 ----------------------------------------------~~sG~LE~tl~------VhEkdvIGl~HHPHq-- 491 (508)
T KOG0275|consen 466 ----------------------------------------------VLSGKLERTLP------VHEKDVIGLTHHPHQ-- 491 (508)
T ss_pred ----------------------------------------------eecCceeeeee------cccccccccccCccc--
Confidence 11111111111 344455668888988
Q ss_pred HHHHhhcCCCchhhHH
Q psy307 710 DDILSKLSDKNASLEE 725 (1019)
Q Consensus 710 ~~Ilt~~~d~~i~lw~ 725 (1019)
+.|++=+.||.++||+
T Consensus 492 NllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 492 NLLASYSEDGLLKLWK 507 (508)
T ss_pred chhhhhcccchhhhcC
Confidence 7888888999999995
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-24 Score=245.22 Aligned_cols=251 Identities=22% Similarity=0.465 Sum_probs=196.3
Q ss_pred CCCCCCeeeeCCCCCceeeecCCC----------------------------CCC-----------------c-c-----
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTP----------------------------PDR-----------------C-F----- 322 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~----------------------------~~~-----------------~-~----- 322 (1019)
|+.+|+++++|+.|+.|++|.... ... | .
T Consensus 275 FS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~ 354 (712)
T KOG0283|consen 275 FSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKA 354 (712)
T ss_pred eCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCcc
Confidence 788999999999999999998765 000 0 0
Q ss_pred --CCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEee
Q psy307 323 --LPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRW 400 (1019)
Q Consensus 323 --lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~ 400 (1019)
+..++++.|+||.+.|..|.|+. ..+|+|+|+|.+||||++ ....|+..+. |..-|+||+|+|-.
T Consensus 355 f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~-~~~~CL~~F~-HndfVTcVaFnPvD--------- 421 (712)
T KOG0283|consen 355 FVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHP-GRKECLKVFS-HNDFVTCVAFNPVD--------- 421 (712)
T ss_pred ccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecC-CCcceeeEEe-cCCeeEEEEecccC---------
Confidence 12377899999999999999998 469999999999999999 5678888775 88888888777654
Q ss_pred cCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCce
Q psy307 401 FPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVA 480 (1019)
Q Consensus 401 ~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v 480 (1019)
.+++++||-||.|+||++ ...+.+. ...-..-|++++|.|||+..+.|+.+|.+++|++...+....+...
T Consensus 422 ----DryFiSGSLD~KvRiWsI-~d~~Vv~-W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~--- 492 (712)
T KOG0283|consen 422 ----DRYFISGSLDGKVRLWSI-SDKKVVD-WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR--- 492 (712)
T ss_pred ----CCcEeecccccceEEeec-CcCeeEe-ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe---
Confidence 489999999999999999 3444333 3333488999999999999999999999999999887776555321
Q ss_pred EEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC-CEEEEEecCCeEEEEEccCcccccceeEEeccccccceE
Q psy307 481 YCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN-KWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYAC 559 (1019)
Q Consensus 481 ~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg-~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~ 559 (1019)
.++.. ....+.|+.+.+.|.. ..+++.+.|..|+|||.++. ..+..|+|......-.
T Consensus 493 ----~~~~K---------------k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~ 550 (712)
T KOG0283|consen 493 ----LHNKK---------------KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQI 550 (712)
T ss_pred ----eccCc---------------cccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcce
Confidence 11100 1112257777777644 35778889999999999776 3456677766656667
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy307 560 SLDFSPDMSYLISGDADGKCYIWDWKTTK 588 (1019)
Q Consensus 560 ~v~fspdg~~Lasgs~DG~I~IWDl~t~~ 588 (1019)
...|+.||++|++|+.|..|+||+.....
T Consensus 551 ~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 551 SASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred eeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 78999999999999999999999985543
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.7e-24 Score=213.84 Aligned_cols=272 Identities=16% Similarity=0.234 Sum_probs=220.6
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVR 373 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~ 373 (1019)
++++|.++.+...|....+|-.. .+..+.++.||++.|+|+...-+ ...++||+.|.++++||+ ..++++.
T Consensus 18 yN~eGDLlFscaKD~~~~vw~s~-------nGerlGty~GHtGavW~~Did~~-s~~liTGSAD~t~kLWDv-~tGk~la 88 (327)
T KOG0643|consen 18 YNREGDLLFSCAKDSTPTVWYSL-------NGERLGTYDGHTGAVWCCDIDWD-SKHLITGSADQTAKLWDV-ETGKQLA 88 (327)
T ss_pred ecCCCcEEEEecCCCCceEEEec-------CCceeeeecCCCceEEEEEecCC-cceeeeccccceeEEEEc-CCCcEEE
Confidence 67899999999999999999543 44668999999999999999885 789999999999999999 5566676
Q ss_pred EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe-----CCCcEEEEEccC------CCeEEEEEccccccEeEE
Q psy307 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS-----MDCRVKLWEVYK------EHRCVRTYYGHRQAVRDI 442 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs-----~Dg~I~IWDl~~------~~~~~~~l~~H~~~V~sl 442 (1019)
++. -..+|..+.|+.+|. +++.+. ..+.|.++|++. ...+...+..+.+.++.+
T Consensus 89 ~~k-~~~~Vk~~~F~~~gn--------------~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a 153 (327)
T KOG0643|consen 89 TWK-TNSPVKRVDFSFGGN--------------LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSA 153 (327)
T ss_pred Eee-cCCeeEEEeeccCCc--------------EEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeee
Confidence 665 457899999999983 444443 347799999963 345677888889999999
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCE
Q psy307 443 CFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKW 522 (1019)
Q Consensus 443 ~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~ 522 (1019)
-|.|-+..|++|..||.|.+||+++|+....- ...|.+.|+.+.++++..+
T Consensus 154 ~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s-----------------------------~~~h~~~Ind~q~s~d~T~ 204 (327)
T KOG0643|consen 154 LWGPLGETIIAGHEDGSISIYDARTGKELVDS-----------------------------DEEHSSKINDLQFSRDRTY 204 (327)
T ss_pred eecccCCEEEEecCCCcEEEEEcccCceeeec-----------------------------hhhhccccccccccCCcce
Confidence 99999999999999999999999998643211 1234567889999999999
Q ss_pred EEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCe--------------EEEEeCCCCc
Q psy307 523 LACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGK--------------CYIWDWKTTK 588 (1019)
Q Consensus 523 Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~--------------I~IWDl~t~~ 588 (1019)
++++|.|.+-++||..+- ..++++... .+|++.+++|-..+++.|+...- .++|++-..+
T Consensus 205 FiT~s~Dttakl~D~~tl---~v~Kty~te---~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eE 278 (327)
T KOG0643|consen 205 FITGSKDTTAKLVDVRTL---EVLKTYTTE---RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEE 278 (327)
T ss_pred EEecccCccceeeeccce---eeEEEeeec---ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHH
Confidence 999999999999999876 455666554 67999999998888887765322 2233333334
Q ss_pred eeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 589 LFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 589 ~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.+...++|-++|++++|||+| ...++||.||.|++.
T Consensus 279 EigrvkGHFGPINsvAfhPdG-ksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 279 EIGRVKGHFGPINSVAFHPDG-KSYSSGGEDGYVRLH 314 (327)
T ss_pred HhccccccccCcceeEECCCC-cccccCCCCceEEEE
Confidence 577889999999999999999 579999999999774
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-25 Score=230.65 Aligned_cols=291 Identities=22% Similarity=0.377 Sum_probs=224.0
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
+..|.||.++|.|++=+|..-..++||+.||.|+|||+ ..+.|++++..|.+.|..|++.. ..
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnl-sqR~~~~~f~AH~G~V~Gi~v~~----------------~~ 121 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNL-SQRECIRTFKAHEGLVRGICVTQ----------------TS 121 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEeh-hhhhhhheeecccCceeeEEecc----------------cc
Confidence 45678999999999999975578999999999999999 77889999999999999999987 25
Q ss_pred EEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecC-CceEEEEEe
Q psy307 408 LLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSR-KVAYCVKFH 486 (1019)
Q Consensus 408 L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~-~~v~~v~~~ 486 (1019)
+++++.|.+|+.|.+.. .+..++.+ .+.+..|.-+..+..|+|||. .|-|||.+...++..+..+ ..+.++.|+
T Consensus 122 ~~tvgdDKtvK~wk~~~--~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfN 196 (433)
T KOG0268|consen 122 FFTVGDDKTVKQWKIDG--PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFN 196 (433)
T ss_pred eEEecCCcceeeeeccC--Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecC
Confidence 89999999999999833 24444433 234555666666777888875 5899999887777777654 334555554
Q ss_pred cCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCC
Q psy307 487 PDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPD 566 (1019)
Q Consensus 487 p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspd 566 (1019)
|.. -..|+++.+|+.|.+||++....+..+. +. ..-+.|+|+|.
T Consensus 197 pvE------------------------------TsILas~~sDrsIvLyD~R~~~Pl~KVi-~~-----mRTN~IswnPe 240 (433)
T KOG0268|consen 197 PVE------------------------------TSILASCASDRSIVLYDLRQASPLKKVI-LT-----MRTNTICWNPE 240 (433)
T ss_pred CCc------------------------------chheeeeccCCceEEEecccCCccceee-ee-----ccccceecCcc
Confidence 432 2456777799999999999886553322 11 22457899998
Q ss_pred CCEEEEEeCCCeEEEEeCCCC-ceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCcee
Q psy307 567 MSYLISGDADGKCYIWDWKTT-KLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLY 645 (1019)
Q Consensus 567 g~~Lasgs~DG~I~IWDl~t~-~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~ 645 (1019)
+-.+++|+.|..++.+|++.- .++...++|.+.|.++.|+|.| .-+++||.|.+|+++--.+- +
T Consensus 241 afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~---------~----- 305 (433)
T KOG0268|consen 241 AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHG---------H----- 305 (433)
T ss_pred ccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCc-chhccccccceEEEeecCCC---------c-----
Confidence 888999999999999999864 5688889999999999999999 68999999999987611100 0
Q ss_pred ecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCchhhHH
Q psy307 646 QFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNASLEE 725 (1019)
Q Consensus 646 ~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~ 725 (1019)
+.+. |-| -.-..|.|+.||-|. +.|++|+.|++||||+
T Consensus 306 ---------------------------------SRdi-Yht------kRMq~V~~Vk~S~Ds--kyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 306 ---------------------------------SRDI-YHT------KRMQHVFCVKYSMDS--KYIISGSDDGNVRLWK 343 (433)
T ss_pred ---------------------------------chhh-hhH------hhhheeeEEEEeccc--cEEEecCCCcceeeee
Confidence 0000 111 113458899999998 9999999999999999
Q ss_pred HHHHhhhe
Q psy307 726 KTAAEFYC 733 (1019)
Q Consensus 726 ~~~~e~~~ 733 (1019)
.-|.|=..
T Consensus 344 a~Aseklg 351 (433)
T KOG0268|consen 344 AKASEKLG 351 (433)
T ss_pred cchhhhcC
Confidence 88876554
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-22 Score=199.14 Aligned_cols=292 Identities=17% Similarity=0.271 Sum_probs=227.5
Q ss_pred CCCCCCCCeeeeCCCCCceeeecCCCCC--------CccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEE
Q psy307 292 DPTDYQGRSFLHPPHDVGTNLRSDTPPD--------RCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLW 363 (1019)
Q Consensus 292 ~~~~~~gr~~~~~~~D~~v~lw~~~~~~--------~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IW 363 (1019)
..+.+.|..++.|++..+.++-..+... ..+.|.-....-+.|.+.|+|.+|+|+ |.+|++|+.|.+|++.
T Consensus 38 v~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~-geliatgsndk~ik~l 116 (350)
T KOG0641|consen 38 VAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC-GELIATGSNDKTIKVL 116 (350)
T ss_pred EEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc-cCeEEecCCCceEEEE
Confidence 4578899999999998888775443211 112233444556789999999999996 8999999999999998
Q ss_pred ecCCCcE----EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe-CCCcEEEEEccCCCeEEEEEcccccc
Q psy307 364 EVYKERR----CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS-MDCRVKLWEVYKEHRCVRTYYGHRQA 438 (1019)
Q Consensus 364 dl~~~~~----~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs-~Dg~I~IWDl~~~~~~~~~l~~H~~~ 438 (1019)
-.+.... .-..+.-|.+.|++++|..+.. ..+.+|++++ .|..|++-|. ..++..+.+.+|++-
T Consensus 117 ~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~----------s~~~il~s~gagdc~iy~tdc-~~g~~~~a~sghtgh 185 (350)
T KOG0641|consen 117 PFNADTCNATGHDLEFNMHDGTIRDLAFLDDPE----------SGGAILASAGAGDCKIYITDC-GRGQGFHALSGHTGH 185 (350)
T ss_pred ecccccccccCcceeeeecCCceeeeEEecCCC----------cCceEEEecCCCcceEEEeec-CCCCcceeecCCccc
Confidence 7643211 1234667999999999987642 2234666654 5677888887 677889999999999
Q ss_pred EeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC
Q psy307 439 VRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP 518 (1019)
Q Consensus 439 V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp 518 (1019)
|.++- +=+|-+|++|+.|.+|++||++-..++.++.... +.. ......|.++++.|
T Consensus 186 ilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~-------~~~----------------glessavaav~vdp 241 (350)
T KOG0641|consen 186 ILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF-------HDG----------------GLESSAVAAVAVDP 241 (350)
T ss_pred EEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcc-------cCC----------------CcccceeEEEEECC
Confidence 99862 3367899999999999999999988887775421 110 11235678899999
Q ss_pred CCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeeeee
Q psy307 519 NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTT----KLFKKWK 594 (1019)
Q Consensus 519 dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~----~~l~~l~ 594 (1019)
.|++|++|-.|....+||++.+ ..++.+..|. ..|.++.|||...|+++|+.|..|++-|+... -++....
T Consensus 242 sgrll~sg~~dssc~lydirg~---r~iq~f~phs--adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ 316 (350)
T KOG0641|consen 242 SGRLLASGHADSSCMLYDIRGG---RMIQRFHPHS--ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA 316 (350)
T ss_pred CcceeeeccCCCceEEEEeeCC---ceeeeeCCCc--cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE
Confidence 9999999999999999999988 4567777776 67999999999999999999999999998642 2344556
Q ss_pred ccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 595 AHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 595 ~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.|...++.+.|+|++ .-+++.+.|.++.+|
T Consensus 317 ehkdk~i~~rwh~~d-~sfisssadkt~tlw 346 (350)
T KOG0641|consen 317 EHKDKAIQCRWHPQD-FSFISSSADKTATLW 346 (350)
T ss_pred eccCceEEEEecCcc-ceeeeccCcceEEEe
Confidence 789999999999998 678999999998776
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=225.31 Aligned_cols=257 Identities=21% Similarity=0.313 Sum_probs=210.1
Q ss_pred CCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEE
Q psy307 307 DVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDIC 386 (1019)
Q Consensus 307 D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~ 386 (1019)
...+.|++.... ..+.++.-..+.|++++|-.| |.+|+.|...|.|+|+|. ..+..++.+.+|..+|..+.
T Consensus 47 S~rvqly~~~~~-------~~~k~~srFk~~v~s~~fR~D-G~LlaaGD~sG~V~vfD~-k~r~iLR~~~ah~apv~~~~ 117 (487)
T KOG0310|consen 47 SVRVQLYSSVTR-------SVRKTFSRFKDVVYSVDFRSD-GRLLAAGDESGHVKVFDM-KSRVILRQLYAHQAPVHVTK 117 (487)
T ss_pred ccEEEEEecchh-------hhhhhHHhhccceeEEEeecC-CeEEEccCCcCcEEEecc-ccHHHHHHHhhccCceeEEE
Confidence 357777765532 234455566789999999986 899999999999999995 66778899999999999999
Q ss_pred EcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCC-EEEEEEcCCeEEEEEC
Q psy307 387 FNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT-NFISAGYDRYLKLWDT 465 (1019)
Q Consensus 387 fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~-~l~S~s~Dg~I~lWDl 465 (1019)
|+|++. ..+++|+.|+.+++||+.+ ......+.+|+..|.|.+|+|... .++|||+||+|++||+
T Consensus 118 f~~~d~-------------t~l~s~sDd~v~k~~d~s~-a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 118 FSPQDN-------------TMLVSGSDDKVVKYWDLST-AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred ecccCC-------------eEEEecCCCceEEEEEcCC-cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 988764 7899999999999999944 445678999999999999999655 7999999999999999
Q ss_pred CCC-ceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCccccc
Q psy307 466 ESG-ECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLN 544 (1019)
Q Consensus 466 ~t~-~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~ 544 (1019)
+.. ..+..+.++ .+|..+.+-|.|..|++++ .+.|+|||+.++.+.
T Consensus 184 R~~~~~v~elnhg-------------------------------~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~ql- 230 (487)
T KOG0310|consen 184 RSLTSRVVELNHG-------------------------------CPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQL- 230 (487)
T ss_pred ccCCceeEEecCC-------------------------------CceeeEEEcCCCCEEEEcC-CCeEEEEEecCCcee-
Confidence 876 555555544 4455666677788888876 679999999966433
Q ss_pred ceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEE
Q psy307 545 RKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAK 624 (1019)
Q Consensus 545 ~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~i 624 (1019)
+..+..|. -.|+|+++..++..|++|+-||.+++||+.+-+.+..+.- .++|.+++.+|++ ..++.|..||.+.+
T Consensus 231 -l~~~~~H~--KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-~~pvLsiavs~dd-~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 231 -LTSMFNHN--KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-PGPVLSIAVSPDD-QTVVIGMSNGLVSI 305 (487)
T ss_pred -hhhhhccc--ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-ccceeeEEecCCC-ceEEEecccceeee
Confidence 23333365 6699999999999999999999999999999999998874 6789999999987 68999999998754
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=215.55 Aligned_cols=292 Identities=19% Similarity=0.289 Sum_probs=219.6
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccC-----------------CCeEEEEEccc
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-----------------EHRCVRTYYGH 435 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~-----------------~~~~~~~l~~H 435 (1019)
..+..|.+++++-+|++|| .++++|+.|..|+|.|+.. ....++++..|
T Consensus 106 ~ylt~HK~~cR~aafs~DG--------------~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH 171 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDG--------------SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDH 171 (430)
T ss_pred EEEeecccceeeeeeCCCC--------------cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhc
Confidence 4567899999999999999 6999999999999999841 12468899999
Q ss_pred cccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEE
Q psy307 436 RQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVT 515 (1019)
Q Consensus 436 ~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~ 515 (1019)
...|+++.|+|....|++|+.|++|+++|+......+.+.. ......+.++.
T Consensus 172 ~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~----------------------------~qd~~~vrsiS 223 (430)
T KOG0640|consen 172 VDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKV----------------------------FQDTEPVRSIS 223 (430)
T ss_pred cCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHH----------------------------hhccceeeeEe
Confidence 99999999999999999999999999999865432211110 01234577888
Q ss_pred EcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee-
Q psy307 516 SSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK- 594 (1019)
Q Consensus 516 ~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~- 594 (1019)
|+|.|.+|++|....++++||+.+.........-.+|. +.|+++.+|+.|++.++|+.||.|+|||=-+++++.++.
T Consensus 224 fHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht--~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~ 301 (430)
T KOG0640|consen 224 FHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT--GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGN 301 (430)
T ss_pred ecCCCceEEEecCCCceeEEeccceeEeeecCcccccc--cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHh
Confidence 89999999999999999999998764332222334455 779999999999999999999999999999999999985
Q ss_pred ccCC-CEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeE
Q psy307 595 AHDG-VCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYA 673 (1019)
Q Consensus 595 ~h~~-~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~a 673 (1019)
+|.+ .|.+..|..++ .++++.|.|..++ +|....++.+....+....--+--++ .-.|+..+.|+
T Consensus 302 AH~gsevcSa~Ftkn~-kyiLsSG~DS~vk-LWEi~t~R~l~~YtGAg~tgrq~~rt------------qAvFNhtEdyV 367 (430)
T KOG0640|consen 302 AHGGSEVCSAVFTKNG-KYILSSGKDSTVK-LWEISTGRMLKEYTGAGTTGRQKHRT------------QAVFNHTEDYV 367 (430)
T ss_pred hcCCceeeeEEEccCC-eEEeecCCcceee-eeeecCCceEEEEecCCcccchhhhh------------hhhhcCccceE
Confidence 6775 68888899988 6999999998775 56777777777766653211110011 11233444454
Q ss_pred EEeecCCCceEEeccccc--cc------cCCceEEEEecCCccHHHHHhhcCCCchhhHH
Q psy307 674 LQFSETNNKNYITEKNRN--EI------KNGSVLRLAFSASKTADDILSKLSDKNASLEE 725 (1019)
Q Consensus 674 l~~sd~~~~~~it~~~~~--~I------~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~ 725 (1019)
+.-.+..+. +.++..|+ .. |||.+..+.-||.. ...++++.|.++|+|.
T Consensus 368 l~pDEas~s-lcsWdaRtadr~~l~slgHn~a~R~i~HSP~~--p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 368 LFPDEASNS-LCSWDARTADRVALLSLGHNGAVRWIVHSPVE--PAFMTCSDDFRARFWY 424 (430)
T ss_pred EccccccCc-eeeccccchhhhhhcccCCCCCceEEEeCCCC--Cceeeecccceeeeee
Confidence 433332222 22222222 11 79999999999999 7899999999999995
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-23 Score=225.01 Aligned_cols=286 Identities=19% Similarity=0.297 Sum_probs=230.4
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE---E-------------EEe-cccCccEeEEEEcCC
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC---V-------------RTY-YGHRQAVRDICFNNT 390 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~---~-------------~~~-~gh~~~V~~i~fspd 390 (1019)
+..+..|.-+|+|++++|+ ..+.++++.||+|.-|++..+... + ..- .+|.+.|.+++.++|
T Consensus 135 ~~~~~~H~~s~~~vals~d-~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPD-DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeecc-ccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 6778899999999999996 789999999999999998654321 1 011 378889999999999
Q ss_pred CCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCce
Q psy307 391 GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGEC 470 (1019)
Q Consensus 391 g~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~ 470 (1019)
| ++|++|+.|..|.||+. .+...+..+.+|.+.|.+++|-.....++++|.|++|++|+++....
T Consensus 214 g--------------kylatgg~d~~v~Iw~~-~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 214 G--------------KYLATGGRDRHVQIWDC-DTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred C--------------cEEEecCCCceEEEecC-cccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 9 79999999999999999 77788888999999999999998888899999999999999987665
Q ss_pred EEEEecC-CceE---------EEEEe-cCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccC
Q psy307 471 ISRFTSR-KVAY---------CVKFH-PDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALN 539 (1019)
Q Consensus 471 i~~~~~~-~~v~---------~v~~~-p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~ 539 (1019)
+.++-.+ ..+. |++.. .|....++.++...+.+..++...+.|+++-.+. .+++||.+|.|.+|++..
T Consensus 279 vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~-HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 279 VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDE-HFVSGSDNGSIALWSLLK 357 (479)
T ss_pred HHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEeccc-ceeeccCCceEEEeeecc
Confidence 5544332 3333 33333 4666677788888889999999999999998554 678999999999999987
Q ss_pred cccccceeEEeccccc-------cceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeeeeeccCCCEEEEEEcCC
Q psy307 540 RFKLNRKKTFEGHMVA-------GYACSLDFSPDMSYLISGDADGKCYIWDWKTT----KLFKKWKAHDGVCISTLWHPH 608 (1019)
Q Consensus 540 ~~~~~~~~~l~gh~~~-------~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~----~~l~~l~~h~~~V~sl~~sp~ 608 (1019)
...+.....-.+-... .+|++++..|...++++|+.+|.|++|-+..+ .++..+. -.+.|++++|+++
T Consensus 358 Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~s 436 (479)
T KOG0299|consen 358 KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNS 436 (479)
T ss_pred cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccC
Confidence 6544322221111111 28999999999999999999999999998877 4455555 4678999999999
Q ss_pred CCcEEEEEeCCCcEEEEecccee
Q psy307 609 EPSKVVTAGWDAATAKVQDANIV 631 (1019)
Q Consensus 609 ~~~~l~s~s~Dg~I~iwwd~~i~ 631 (1019)
|..+++.+|....+-.||-....
T Consensus 437 gk~ivagiGkEhRlGRW~~~k~~ 459 (479)
T KOG0299|consen 437 GKRIVAGIGKEHRLGRWWCLKSG 459 (479)
T ss_pred CCEEEEecccccccceeeEeecc
Confidence 97788999999999999976543
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=208.63 Aligned_cols=247 Identities=20% Similarity=0.259 Sum_probs=200.9
Q ss_pred cCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeec
Q psy307 322 FLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 322 ~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
.....++..+..|.++|++++.+ +.+++|||.|-+|+|||+ .....+..+..|.+.|+++.|.+.-+
T Consensus 30 ~~~l~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm-~k~~qlg~ll~HagsitaL~F~~~~S--------- 96 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDM-RKRKQLGILLSHAGSITALKFYPPLS--------- 96 (362)
T ss_pred ceeeeccccccccccceeEEEec---ceeEeccCCCCcEEEEec-cchhhhcceeccccceEEEEecCCcc---------
Confidence 34456688999999999999984 679999999999999999 55666788889999999999998652
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceE
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY 481 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~ 481 (1019)
...|++|+.||.|.+|+. ..-.++..+.+|.+.|+.++.+|.|+.-++.+.|+.+++||+-.|+.-..........
T Consensus 97 ---~shLlS~sdDG~i~iw~~-~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at 172 (362)
T KOG0294|consen 97 ---KSHLLSGSDDGHIIIWRV-GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKAT 172 (362)
T ss_pred ---hhheeeecCCCcEEEEEc-CCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcce
Confidence 248999999999999999 6668999999999999999999999999999999999999998887655554433222
Q ss_pred EEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEE
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSL 561 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v 561 (1019)
.+.|+|.|.+++.++ .+.|-+|.+.+...+ ..+... ..+.++
T Consensus 173 -------------------------------~v~w~~~Gd~F~v~~-~~~i~i~q~d~A~v~---~~i~~~---~r~l~~ 214 (362)
T KOG0294|consen 173 -------------------------------LVSWSPQGDHFVVSG-RNKIDIYQLDNASVF---REIENP---KRILCA 214 (362)
T ss_pred -------------------------------eeEEcCCCCEEEEEe-ccEEEEEecccHhHh---hhhhcc---ccceee
Confidence 366777888887776 467889988765322 111111 235566
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEc--CCCCcEEEEEeCCCcEEEE
Q psy307 562 DFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWH--PHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 562 ~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~s--p~~~~~l~s~s~Dg~I~iw 625 (1019)
.|. ++..|++|..|+.|.+||..+..++..+.+|...|-++.+- |.+ .+|+|+|.||.|++|
T Consensus 215 ~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vW 278 (362)
T KOG0294|consen 215 TFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVW 278 (362)
T ss_pred eec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCc-eEEEEeccCceEEEE
Confidence 665 56789999999999999999999999999999999999833 334 699999999999776
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-23 Score=223.75 Aligned_cols=252 Identities=23% Similarity=0.353 Sum_probs=199.4
Q ss_pred eeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcE---------EEEEecccCccEeEEEEcCCCCceeEEEee
Q psy307 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERR---------CVRTYYGHRQAVRDICFNNTGTNFISAIRW 400 (1019)
Q Consensus 330 ~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~---------~~~~~~gh~~~V~~i~fspdg~~~vs~i~~ 400 (1019)
..--|.+.|+.+++-|.+..++++++..+.|.|||...... +-..+.||.+.- .+++|
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg-------------~glsW 185 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEG-------------YGLSW 185 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccc-------------ccccc
Confidence 33469999999999999999999999999999999843211 112566777632 34666
Q ss_pred cCCCCcEEEEEeCCCcEEEEEccCCCe------EEEEEccccccEeEEEEecCC-CEEEEEEcCCeEEEEECCCC--ceE
Q psy307 401 FPKSAHLLLSCSMDCRVKLWEVYKEHR------CVRTYYGHRQAVRDICFNNTG-TNFISAGYDRYLKLWDTESG--ECI 471 (1019)
Q Consensus 401 ~p~~~~~L~sgs~Dg~I~IWDl~~~~~------~~~~l~~H~~~V~sl~fspdg-~~l~S~s~Dg~I~lWDl~t~--~~i 471 (1019)
++.....|++|+.|++|++||+..... +...+.+|...|..++|++.. ..|++++.|+.+.|||++++ ++.
T Consensus 186 n~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 186 NRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred ccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCc
Confidence 666778999999999999999965433 567789999999999999854 46889999999999999953 332
Q ss_pred EEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC-CCCEEEEEecCCeEEEEEccCcccccceeEEe
Q psy307 472 SRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP-NNKWLACQSMDNKILIFSALNRFKLNRKKTFE 550 (1019)
Q Consensus 472 ~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~ 550 (1019)
.... .|...+.+++|+| ++..||+||.|++|.+||+++-.. +..++.
T Consensus 266 ~~~~------------------------------ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e 313 (422)
T KOG0264|consen 266 HSVK------------------------------AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFE 313 (422)
T ss_pred cccc------------------------------ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--Cceecc
Confidence 2222 2334455555555 456789999999999999997643 678899
Q ss_pred ccccccceEEEEEcCCC-CEEEEEeCCCeEEEEeCCCC--------------ceeeeeeccCCCEEEEEEcCCCCcEEEE
Q psy307 551 GHMVAGYACSLDFSPDM-SYLISGDADGKCYIWDWKTT--------------KLFKKWKAHDGVCISTLWHPHEPSKVVT 615 (1019)
Q Consensus 551 gh~~~~~V~~v~fspdg-~~Lasgs~DG~I~IWDl~t~--------------~~l~~l~~h~~~V~sl~~sp~~~~~l~s 615 (1019)
+|. ..|.+|.|||+. ..||+++.|+++.|||+..- +++..-.||.+.|..+.|+|..+..|+|
T Consensus 314 ~H~--dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~S 391 (422)
T KOG0264|consen 314 GHE--DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIAS 391 (422)
T ss_pred CCC--cceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEE
Confidence 998 669999999964 57899999999999998641 2345567899999999999999999999
Q ss_pred EeCCCcEEEEecc
Q psy307 616 AGWDAATAKVQDA 628 (1019)
Q Consensus 616 ~s~Dg~I~iwwd~ 628 (1019)
++.|+.+.+|.-.
T Consensus 392 vaeDN~LqIW~~s 404 (422)
T KOG0264|consen 392 VAEDNILQIWQMA 404 (422)
T ss_pred ecCCceEEEeecc
Confidence 9999999887444
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=229.32 Aligned_cols=266 Identities=23% Similarity=0.343 Sum_probs=212.9
Q ss_pred eeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecc-cCc
Q psy307 302 LHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG-HRQ 380 (1019)
Q Consensus 302 ~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g-h~~ 380 (1019)
+.......|.+|+..... .......+...|+++.|+++ |.+|++|..+|.|.|||+ ...+.++.+.+ |..
T Consensus 191 laValg~~vylW~~~s~~-------v~~l~~~~~~~vtSv~ws~~-G~~LavG~~~g~v~iwD~-~~~k~~~~~~~~h~~ 261 (484)
T KOG0305|consen 191 LAVALGQSVYLWSASSGS-------VTELCSFGEELVTSVKWSPD-GSHLAVGTSDGTVQIWDV-KEQKKTRTLRGSHAS 261 (484)
T ss_pred EEEEecceEEEEecCCCc-------eEEeEecCCCceEEEEECCC-CCEEEEeecCCeEEEEeh-hhccccccccCCcCc
Confidence 333355688899766432 12223334889999999995 899999999999999999 55566778888 999
Q ss_pred cEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeE
Q psy307 381 AVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYL 460 (1019)
Q Consensus 381 ~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I 460 (1019)
.|-+++|.. ..+.+|+.|+.|..+|++........+.+|...|..+.|++|+.++++|+.|+.+
T Consensus 262 rvg~laW~~----------------~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~ 325 (484)
T KOG0305|consen 262 RVGSLAWNS----------------SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVV 325 (484)
T ss_pred eeEEEeccC----------------ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccce
Confidence 999999983 5799999999999999987777777799999999999999999999999999999
Q ss_pred EEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC-CCCEEEEE--ecCCeEEEEEc
Q psy307 461 KLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP-NNKWLACQ--SMDNKILIFSA 537 (1019)
Q Consensus 461 ~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp-dg~~Lasg--s~Dg~I~iwd~ 537 (1019)
.|||.....++..+..+ ...|.+++|+| ....||+| +.|+.|++||+
T Consensus 326 ~Iwd~~~~~p~~~~~~H------------------------------~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~ 375 (484)
T KOG0305|consen 326 FIWDGLSPEPKFTFTEH------------------------------TAAVKALAWCPWQSGLLATGGGSADRCIKFWNT 375 (484)
T ss_pred EeccCCCccccEEEecc------------------------------ceeeeEeeeCCCccCceEEcCCCcccEEEEEEc
Confidence 99999666665555443 23344444554 34567775 47999999999
Q ss_pred cCcccccceeEEeccccccceEEEEEcCCCCEEEE--EeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEE
Q psy307 538 LNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLIS--GDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVT 615 (1019)
Q Consensus 538 ~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Las--gs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s 615 (1019)
.++..+ .... ..+.|+++.|++..+-|++ |..++.|.||++.+.+.+..+.+|...|..++|+|+| ..+++
T Consensus 376 ~~g~~i---~~vd---tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg-~~i~t 448 (484)
T KOG0305|consen 376 NTGARI---DSVD---TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDG-ETIVT 448 (484)
T ss_pred CCCcEe---cccc---cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCC-CEEEE
Confidence 987443 2222 2367999999999876665 4457789999999999999999999999999999998 69999
Q ss_pred EeCCCcEEEEeccc
Q psy307 616 AGWDAATAKVQDAN 629 (1019)
Q Consensus 616 ~s~Dg~I~iwwd~~ 629 (1019)
|+.|.++++|--.+
T Consensus 449 ~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 449 GAADETLRFWNLFD 462 (484)
T ss_pred ecccCcEEeccccC
Confidence 99999998884433
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.5e-23 Score=202.74 Aligned_cols=284 Identities=19% Similarity=0.307 Sum_probs=223.1
Q ss_pred EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCC
Q psy307 370 RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT 449 (1019)
Q Consensus 370 ~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~ 449 (1019)
+.++.+.+|.++|+.+.|+-+| ++.++++.|.+|++|+. ..+.+++++.+|...|..++.+.|+.
T Consensus 8 kr~~~l~~~qgaV~avryN~dG--------------nY~ltcGsdrtvrLWNp-~rg~liktYsghG~EVlD~~~s~Dns 72 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDG--------------NYCLTCGSDRTVRLWNP-LRGALIKTYSGHGHEVLDAALSSDNS 72 (307)
T ss_pred hhceeecccccceEEEEEccCC--------------CEEEEcCCCceEEeecc-cccceeeeecCCCceeeecccccccc
Confidence 3467788999999999999999 79999999999999999 78899999999999999999999999
Q ss_pred EEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC
Q psy307 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD 529 (1019)
Q Consensus 450 ~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D 529 (1019)
.|++|+.|+.|.+||+++|+.++.+..+. ..|+.+.|+.+...+++|+.|
T Consensus 73 kf~s~GgDk~v~vwDV~TGkv~Rr~rgH~------------------------------aqVNtV~fNeesSVv~SgsfD 122 (307)
T KOG0316|consen 73 KFASCGGDKAVQVWDVNTGKVDRRFRGHL------------------------------AQVNTVRFNEESSVVASGSFD 122 (307)
T ss_pred ccccCCCCceEEEEEcccCeeeeeccccc------------------------------ceeeEEEecCcceEEEecccc
Confidence 99999999999999999999999988653 455666667777899999999
Q ss_pred CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCC
Q psy307 530 NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609 (1019)
Q Consensus 530 g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~ 609 (1019)
.++++||.++. ...+++.+.... ..|.++.. .+..+++|+.||+++.||++.|++....-+| +|++++|++++
T Consensus 123 ~s~r~wDCRS~-s~ePiQildea~--D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~ 195 (307)
T KOG0316|consen 123 SSVRLWDCRSR-SFEPIQILDEAK--DGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDG 195 (307)
T ss_pred ceeEEEEcccC-CCCccchhhhhc--CceeEEEe--cccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCC
Confidence 99999999875 335566666555 45777777 4667999999999999999999987776655 79999999999
Q ss_pred CcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccc
Q psy307 610 PSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKN 689 (1019)
Q Consensus 610 ~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~ 689 (1019)
+..+.++.|+++++ -|...++++....++..+.+.++-.+.-+ ...++..++++...+|...+
T Consensus 196 -nc~La~~l~stlrL-lDk~tGklL~sYkGhkn~eykldc~l~qs---------------dthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 196 -NCSLASSLDSTLRL-LDKETGKLLKSYKGHKNMEYKLDCCLNQS---------------DTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred -CEEEEeeccceeee-cccchhHHHHHhcccccceeeeeeeeccc---------------ceeEEeccCCceEEEEEecc
Confidence 58888899998855 58889999999999888877765543333 22333333333444444444
Q ss_pred cccc-----cCCc-eEEEEecCCccHHHHHhhcCCCchhhHH
Q psy307 690 RNEI-----KNGS-VLRLAFSASKTADDILSKLSDKNASLEE 725 (1019)
Q Consensus 690 ~~~I-----~ng~-Vl~LafSPd~~a~~Ilt~~~d~~i~lw~ 725 (1019)
...+ +... |.+|+++|.. ..++++ .++.+-+|.
T Consensus 259 ~~~~sk~~~~~~v~v~dl~~hp~~--~~f~~A-~~~~~~~~~ 297 (307)
T KOG0316|consen 259 ETQISKLSVVSTVIVTDLSCHPTM--DDFITA-TGHGDLFWY 297 (307)
T ss_pred ceeeeeeccCCceeEEeeecccCc--cceeEe-cCCceecee
Confidence 3333 3555 7899999998 333333 334455554
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=228.84 Aligned_cols=264 Identities=17% Similarity=0.280 Sum_probs=218.3
Q ss_pred CCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEE-EEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEe
Q psy307 297 QGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISA-IRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTY 375 (1019)
Q Consensus 297 ~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~-i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~ 375 (1019)
++-.++.++.|+++++|....... ...+.+.+|.+-|.+ ++|.+..+-.|++|++|+.|.+|.+ .+..++.++
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~~~~~-----l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~-~~~~P~~~L 97 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKKGKQY-----LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKL-SQAEPLYTL 97 (745)
T ss_pred CCeEEeecCCCCceeeeeccCccc-----ccceecccCcceeeccceeccccCcceEeecccceEEEEec-CCCCchhhh
Confidence 445688999999999997754332 235678899999988 9998755567999999999999999 667889999
Q ss_pred cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEE
Q psy307 376 YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG 455 (1019)
Q Consensus 376 ~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s 455 (1019)
.||...|.++....++ .++|||.|.++++|-+ +++...+.+|...|++++.-|.+ .++|||
T Consensus 98 kgH~snVC~ls~~~~~---------------~~iSgSWD~TakvW~~---~~l~~~l~gH~asVWAv~~l~e~-~~vTgs 158 (745)
T KOG0301|consen 98 KGHKSNVCSLSIGEDG---------------TLISGSWDSTAKVWRI---GELVYSLQGHTASVWAVASLPEN-TYVTGS 158 (745)
T ss_pred hccccceeeeecCCcC---------------ceEecccccceEEecc---hhhhcccCCcchheeeeeecCCC-cEEecc
Confidence 9999999999887776 4899999999999976 55666799999999999999988 899999
Q ss_pred cCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEE
Q psy307 456 YDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIF 535 (1019)
Q Consensus 456 ~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iw 535 (1019)
.|++|++|.- ++++++|..|. ..|..+++-+++ .|++++.||.|++|
T Consensus 159 aDKtIklWk~--~~~l~tf~gHt------------------------------D~VRgL~vl~~~-~flScsNDg~Ir~w 205 (745)
T KOG0301|consen 159 ADKTIKLWKG--GTLLKTFSGHT------------------------------DCVRGLAVLDDS-HFLSCSNDGSIRLW 205 (745)
T ss_pred CcceeeeccC--Cchhhhhccch------------------------------hheeeeEEecCC-CeEeecCCceEEEE
Confidence 9999999974 66777776542 345555555554 46789999999999
Q ss_pred EccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEE
Q psy307 536 SALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVT 615 (1019)
Q Consensus 536 d~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s 615 (1019)
++.+ ..+..+.||. ..+.+++..+++..+++++.|++++||+.. .+.+.+....-.|+++.+.++|. +++
T Consensus 206 ~~~g----e~l~~~~ght--n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD--Ivv 275 (745)
T KOG0301|consen 206 DLDG----EVLLEMHGHT--NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD--IVV 275 (745)
T ss_pred eccC----ceeeeeeccc--eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC--EEE
Confidence 9954 4567888888 789999988888999999999999999876 67777775566899999998874 999
Q ss_pred EeCCCcEEEEecc
Q psy307 616 AGWDAATAKVQDA 628 (1019)
Q Consensus 616 ~s~Dg~I~iwwd~ 628 (1019)
||.||.|++|-..
T Consensus 276 g~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 276 GGSDGRVRVFTVD 288 (745)
T ss_pred eccCceEEEEEec
Confidence 9999999887544
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-21 Score=231.56 Aligned_cols=223 Identities=16% Similarity=0.236 Sum_probs=172.2
Q ss_pred eeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC-------
Q psy307 354 CSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH------- 426 (1019)
Q Consensus 354 gs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~------- 426 (1019)
|+.++.|++|+... ...+..+.+|.+.|.+++|+|+.. .+|++|+.||+|+|||+....
T Consensus 50 GG~~gvI~L~~~~r-~~~v~~L~gH~~~V~~lafsP~~~-------------~lLASgS~DgtIrIWDi~t~~~~~~~i~ 115 (568)
T PTZ00420 50 GGLIGAIRLENQMR-KPPVIKLKGHTSSILDLQFNPCFS-------------EILASGSEDLTIRVWEIPHNDESVKEIK 115 (568)
T ss_pred CCceeEEEeeecCC-CceEEEEcCCCCCEEEEEEcCCCC-------------CEEEEEeCCCeEEEEECCCCCccccccc
Confidence 67899999999843 467888999999999999998632 699999999999999996543
Q ss_pred eEEEEEccccccEeEEEEecCCCE-EEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeC
Q psy307 427 RCVRTYYGHRQAVRDICFNNTGTN-FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIAD 505 (1019)
Q Consensus 427 ~~~~~l~~H~~~V~sl~fspdg~~-l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~ 505 (1019)
.++..+.+|...|.+++|+|++.. +++++.|++|+|||+++++.+..+..+
T Consensus 116 ~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~---------------------------- 167 (568)
T PTZ00420 116 DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP---------------------------- 167 (568)
T ss_pred cceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC----------------------------
Confidence 245578899999999999999876 568999999999999988765544322
Q ss_pred CCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEecccccc---ceEEEEEcCCCCEEEEEeCCC----e
Q psy307 506 PTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAG---YACSLDFSPDMSYLISGDADG----K 578 (1019)
Q Consensus 506 ~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~---~V~~v~fspdg~~Lasgs~DG----~ 578 (1019)
..+.+++|+|+|.+|++++.|+.|+|||++++. .+..+.+|.... .+....|++++.+|++++.|+ .
T Consensus 168 ---~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~---~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~ 241 (568)
T PTZ00420 168 ---KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE---IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMRE 241 (568)
T ss_pred ---CcEEEEEECCCCCEEEEEecCCEEEEEECCCCc---EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccE
Confidence 245677888899999999999999999999873 446677886321 122335678999999988774 7
Q ss_pred EEEEeCCC-Cceeeeeecc--CCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 579 CYIWDWKT-TKLFKKWKAH--DGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 579 I~IWDl~t-~~~l~~l~~h--~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
|+|||+++ ++++..+..+ .+.+.. .|.++.+.++++|+.|++|++|
T Consensus 242 VkLWDlr~~~~pl~~~~ld~~~~~L~p-~~D~~tg~l~lsGkGD~tIr~~ 290 (568)
T PTZ00420 242 MKLWDLKNTTSALVTMSIDNASAPLIP-HYDESTGLIYLIGKGDGNCRYY 290 (568)
T ss_pred EEEEECCCCCCceEEEEecCCccceEE-eeeCCCCCEEEEEECCCeEEEE
Confidence 99999995 5666655433 333333 3445544789999999999776
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-23 Score=231.34 Aligned_cols=284 Identities=21% Similarity=0.302 Sum_probs=230.3
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-EEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-RCV 372 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~~~ 372 (1019)
.-+.||++.+|+.|+.|++|+..... .......+..++.|++.|+.+....+ +..|+|+|.|-+|++|+..... -|+
T Consensus 33 da~~~ryLfTgGRDg~i~~W~~~~d~-~~~s~~~~asme~HsDWVNDiiL~~~-~~tlIS~SsDtTVK~W~~~~~~~~c~ 110 (735)
T KOG0308|consen 33 DAPNGRYLFTGGRDGIIRLWSVTQDS-NEPSTPYIASMEHHSDWVNDIILCGN-GKTLISASSDTTVKVWNAHKDNTFCM 110 (735)
T ss_pred cCCCCceEEecCCCceEEEecccccc-CCcccchhhhhhhhHhHHhhHHhhcC-CCceEEecCCceEEEeecccCcchhH
Confidence 34567889999999999999876432 22222358899999999999998885 7799999999999999996544 788
Q ss_pred EEecccCccEeEEEE-cCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe---------EEEEEc-cccccEeE
Q psy307 373 RTYYGHRQAVRDICF-NNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR---------CVRTYY-GHRQAVRD 441 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~f-spdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~---------~~~~l~-~H~~~V~s 441 (1019)
.++..|...|.|+++ .++. .++++|+.|+.|.+||+..... ....+. |+...|.+
T Consensus 111 stir~H~DYVkcla~~ak~~--------------~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS 176 (735)
T KOG0308|consen 111 STIRTHKDYVKCLAYIAKNN--------------ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS 176 (735)
T ss_pred hhhhcccchheeeeecccCc--------------eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceee
Confidence 899999999999988 4444 7899999999999999964421 222333 88999999
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCC
Q psy307 442 ICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK 521 (1019)
Q Consensus 442 l~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~ 521 (1019)
++.++.|..|++|+..+.|++||.++++.+..+.+| ...|..+..+++|.
T Consensus 177 LA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGH------------------------------TdNVr~ll~~dDGt 226 (735)
T KOG0308|consen 177 LAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH------------------------------TDNVRVLLVNDDGT 226 (735)
T ss_pred eecCCcceEEEecCcccceEEeccccccceeeeecc------------------------------ccceEEEEEcCCCC
Confidence 999999999999999999999999999877766643 35567778888999
Q ss_pred EEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEE
Q psy307 522 WLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCI 601 (1019)
Q Consensus 522 ~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~ 601 (1019)
.++++|.||+|++||+... .++.++..|.. .|.++..+|+-.++++|+.||.|..=|+++......+-..+.+|.
T Consensus 227 ~~ls~sSDgtIrlWdLgqQ---rCl~T~~vH~e--~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~ 301 (735)
T KOG0308|consen 227 RLLSASSDGTIRLWDLGQQ---RCLATYIVHKE--GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVL 301 (735)
T ss_pred eEeecCCCceEEeeecccc---ceeeeEEeccC--ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchh
Confidence 9999999999999999876 56788888884 488999999999999999999999999988544333433456777
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeccc
Q psy307 602 STLWHPHEPSKVVTAGWDAATAKVQDAN 629 (1019)
Q Consensus 602 sl~~sp~~~~~l~s~s~Dg~I~iwwd~~ 629 (1019)
.+..+.+.. -+.++.+|+.|..|-..-
T Consensus 302 ~l~~~~~~~-~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 302 KLHLHEHDN-SVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred hhhhccccC-CceeeeccccceecCCcc
Confidence 887776553 347788999999985443
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-23 Score=210.79 Aligned_cols=287 Identities=21% Similarity=0.296 Sum_probs=227.2
Q ss_pred eeeccCCCCeEEEEEcC--CCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCc
Q psy307 329 HTWEGHTKGISAIRWFP--KSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAH 406 (1019)
Q Consensus 329 ~~l~gH~~~V~~i~fsp--d~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~ 406 (1019)
.+..||+.+|-.++|+| ..|.+|++++.||.-.+-+- .++.-+.++.||.++|.+..+..+. .
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g-~tgdwigtfeghkgavw~~~l~~na--------------~ 72 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNG-DTGDWIGTFEGHKGAVWSATLNKNA--------------T 72 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccC-CCCCcEEeeeccCcceeeeecCchh--------------h
Confidence 35689999999999997 35889999999999888775 4556689999999999999888766 5
Q ss_pred EEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEe
Q psy307 407 LLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFH 486 (1019)
Q Consensus 407 ~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~ 486 (1019)
..++++.|-+-+|||.- ++..+..+ .|..-|.+++|+.|.++|++|+.+..++|+|++..+..
T Consensus 73 ~aasaaadftakvw~a~-tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap--------------- 135 (334)
T KOG0278|consen 73 RAASAAADFTAKVWDAV-TGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP--------------- 135 (334)
T ss_pred hhhhhcccchhhhhhhh-hhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCC---------------
Confidence 78899999999999983 33333333 48888999999999999999999999999998754310
Q ss_pred cCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCC
Q psy307 487 PDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPD 566 (1019)
Q Consensus 487 p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspd 566 (1019)
..-...+.+.|..+.|....+.|++.+.|++|++||.+++... +++.-. ..|+++.++++
T Consensus 136 --------------p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v---~sL~~~---s~VtSlEvs~d 195 (334)
T KOG0278|consen 136 --------------PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEV---QSLEFN---SPVTSLEVSQD 195 (334)
T ss_pred --------------chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEE---EEEecC---CCCcceeeccC
Confidence 0112345567788888888889999999999999999998443 444433 45899999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceee
Q psy307 567 MSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQ 646 (1019)
Q Consensus 567 g~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~ 646 (1019)
|++|.++ ..+.|.+||.++..+++.++.. ..|.+...+|+. ..+++|+.|+.++.+ |.+
T Consensus 196 G~ilTia-~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k-~~fVaGged~~~~kf-Dy~----------------- 254 (334)
T KOG0278|consen 196 GRILTIA-YGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKK-EFFVAGGEDFKVYKF-DYN----------------- 254 (334)
T ss_pred CCEEEEe-cCceeEEeccccccceeeccCc-cccccccccCCC-ceEEecCcceEEEEE-ecc-----------------
Confidence 9988766 4567999999999999888754 468999999988 689999999887554 111
Q ss_pred cccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCchhhHHH
Q psy307 647 FNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNASLEEK 726 (1019)
Q Consensus 647 l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~~ 726 (1019)
.++.+.. | +.-|-|+|.|+.|||++ ...++|++||+||||.+
T Consensus 255 ---------------------TgeEi~~---------~------nkgh~gpVhcVrFSPdG--E~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 255 ---------------------TGEEIGS---------Y------NKGHFGPVHCVRFSPDG--ELYASGSEDGTIRLWQT 296 (334)
T ss_pred ---------------------CCceeee---------c------ccCCCCceEEEEECCCC--ceeeccCCCceEEEEEe
Confidence 1111110 1 12578999999999999 88999999999999983
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=203.03 Aligned_cols=238 Identities=17% Similarity=0.322 Sum_probs=188.4
Q ss_pred EEEEEcCCCCcEEEEee-------CCCeEEEEecCCCcEEEEEec--ccCccEeEEEEcCCCCceeEEEeecCCCCcEEE
Q psy307 339 SAIRWFPKSAHLLLSCS-------MDCRVKLWEVYKERRCVRTYY--GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLL 409 (1019)
Q Consensus 339 ~~i~fspd~g~lLaSgs-------~Dg~I~IWdl~~~~~~~~~~~--gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~ 409 (1019)
.++.|||--...|+.+. ..|++.|-++.... -+..+. .-...+ ..++|++...+.++
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~-gi~e~~s~d~~D~L-------------fdV~Wse~~e~~~~ 77 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK-GIQECQSYDTEDGL-------------FDVAWSENHENQVI 77 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCC-CeEEEEeeecccce-------------eEeeecCCCcceEE
Confidence 56888886555555442 46888888874221 111111 112333 45556666668999
Q ss_pred EEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCC-CEEEEEEcCCeEEEEECCCCceEEEEecC-CceEEEEEec
Q psy307 410 SCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTG-TNFISAGYDRYLKLWDTESGECISRFTSR-KVAYCVKFHP 487 (1019)
Q Consensus 410 sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg-~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~-~~v~~v~~~p 487 (1019)
+++.||+++|||+.....+++.++.|...|.++.|++.. ..++++|.|++|++||...++.+.+|..+ ..|+...|+|
T Consensus 78 ~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp 157 (311)
T KOG0277|consen 78 AASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSP 157 (311)
T ss_pred EEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCC
Confidence 999999999999988889999999999999999999854 45888999999999999999999998765 4456666665
Q ss_pred CCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcC-C
Q psy307 488 DEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP-D 566 (1019)
Q Consensus 488 ~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp-d 566 (1019)
. .++.++++|.|+++++||++...+. ..+..|. ..+.++.|+. +
T Consensus 158 ~------------------------------~~nlfas~Sgd~~l~lwdvr~~gk~---~~i~ah~--~Eil~cdw~ky~ 202 (311)
T KOG0277|consen 158 H------------------------------IPNLFASASGDGTLRLWDVRSPGKF---MSIEAHN--SEILCCDWSKYN 202 (311)
T ss_pred C------------------------------CCCeEEEccCCceEEEEEecCCCce---eEEEecc--ceeEeecccccC
Confidence 4 3578999999999999999865332 3467776 5699999987 6
Q ss_pred CCEEEEEeCCCeEEEEeCCCC-ceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 567 MSYLISGDADGKCYIWDWKTT-KLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 567 g~~Lasgs~DG~I~IWDl~t~-~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
...|++|+.|+.|++||++.- .++..+.+|.-.|..+.|+|....+|++++.|-++++|
T Consensus 203 ~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw 262 (311)
T KOG0277|consen 203 HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIW 262 (311)
T ss_pred CcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEec
Confidence 678999999999999999874 56888999999999999999988999999999999776
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-22 Score=224.73 Aligned_cols=405 Identities=19% Similarity=0.244 Sum_probs=269.6
Q ss_pred eeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCC--cEEEEeeCCCeEEEEecCCCc---------
Q psy307 301 FLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSA--HLLLSCSMDCRVKLWEVYKER--------- 369 (1019)
Q Consensus 301 ~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g--~lLaSgs~Dg~I~IWdl~~~~--------- 369 (1019)
++-|+.+..+.+.... .. ..+.+..+.||.+.|.+++|...++ .+|+|||.|..||||.+.-..
T Consensus 162 la~Ggs~~~v~~~s~~-~d----~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~ 236 (764)
T KOG1063|consen 162 LACGGSKFVVDLYSSS-AD----SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNERED 236 (764)
T ss_pred EEecCcceEEEEeccC-Cc----ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccc
Confidence 4566677777787655 22 3467889999999999999987644 478999999999999874322
Q ss_pred -----------EEE----------EEecccCccEeEEEEcCCCCceeEE-------------------------------
Q psy307 370 -----------RCV----------RTYYGHRQAVRDICFNNTGTNFISA------------------------------- 397 (1019)
Q Consensus 370 -----------~~~----------~~~~gh~~~V~~i~fspdg~~~vs~------------------------------- 397 (1019)
.+. ..+.||...|.++.|+|.+..++++
T Consensus 237 ~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a 316 (764)
T KOG1063|consen 237 SLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSA 316 (764)
T ss_pred ccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccc
Confidence 112 1235999999999999998555443
Q ss_pred -----EeecCCCCcEEEEEeCCCcEEEEEccCCC--eEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCce
Q psy307 398 -----IRWFPKSAHLLLSCSMDCRVKLWEVYKEH--RCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGEC 470 (1019)
Q Consensus 398 -----i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~--~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~ 470 (1019)
+.|+|+. +.+++-+..|..++|...... .......||.+.|.+++|+|.|.+++++|.|.+-||+---..+.
T Consensus 317 ~GF~g~lw~~n~-~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~ 395 (764)
T KOG1063|consen 317 GGFWGGLWSPNS-NVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQ 395 (764)
T ss_pred cceeeEEEcCCC-CEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccccccc
Confidence 2245544 567777888888999832222 23445689999999999999999999999999999986431111
Q ss_pred -EEEE----ecCCceEEEEEecCCCeeee--------------------------------------------------c
Q psy307 471 -ISRF----TSRKVAYCVKFHPDEDKQHL--------------------------------------------------D 495 (1019)
Q Consensus 471 -i~~~----~~~~~v~~v~~~p~~~~~~~--------------------------------------------------~ 495 (1019)
-+.+ .++....|+++-+.. .+++ .
T Consensus 396 ~wHEiaRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~ 474 (764)
T KOG1063|consen 396 EWHEIARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAF 474 (764)
T ss_pred ceeeecccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCC
Confidence 1111 122344566555521 1111 0
Q ss_pred cC---CCce-----------------------------------eeeCCCCCcccEEEEcCCCCEEEEEecCC-----eE
Q psy307 496 IP---VDMK-----------------------------------YIADPTMHSMPAVTSSPNNKWLACQSMDN-----KI 532 (1019)
Q Consensus 496 ~~---~~~~-----------------------------------~i~~~~~~~i~~v~~spdg~~Lasgs~Dg-----~I 532 (1019)
.+ .... .-...|...|.+++.+|+|+++|+++... .|
T Consensus 475 ~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI 554 (764)
T KOG1063|consen 475 FPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVI 554 (764)
T ss_pred cccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEE
Confidence 00 0000 00112455688999999999999998654 69
Q ss_pred EEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eeeeeeccCCCEEEEEEcCC
Q psy307 533 LIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK----LFKKWKAHDGVCISTLWHPH 608 (1019)
Q Consensus 533 ~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~----~l~~l~~h~~~V~sl~~sp~ 608 (1019)
++|+..+- .....+.+|. -.|+.++|||||+||++.+.|.++.+|...... .....+.|..-|+++.|+|+
T Consensus 555 ~lw~t~~W---~~~~~L~~Hs--LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd 629 (764)
T KOG1063|consen 555 RLWNTANW---LQVQELEGHS--LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD 629 (764)
T ss_pred EEEeccch---hhhheecccc--eEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcc
Confidence 99998875 3345788887 569999999999999999999999999875432 23447899999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeccceeeeeeeccccCCc--eeeccccc---cc---chhhhhhhcccccCCCceeEEEee---
Q psy307 609 EPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQ--LYQFNQTL---TL---SSIIQEICSGWSLSDSEQYALQFS--- 677 (1019)
Q Consensus 609 ~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~q--l~~l~~~~---~L---Ss~~~~~~~~wsls~~e~~al~~s--- 677 (1019)
+ .+++|+|.|.+|++|-..+... ..+.+ ...++..+ .. --..+..|.+.+++.|+.++..+.
T Consensus 630 e-~~FaTaSRDK~VkVW~~~~~~d------~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~ 702 (764)
T KOG1063|consen 630 E-KYFATASRDKKVKVWEEPDLRD------KYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREH 702 (764)
T ss_pred c-ceeEEecCCceEEEEeccCchh------hhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEeccccc
Confidence 8 5799999999998885443311 11111 11111110 00 011122355677888888877765
Q ss_pred ---cCCCceEEeccccccccCCceEEEEecCCc--------cHHHHHhhcCCCchhhH
Q psy307 678 ---ETNNKNYITEKNRNEIKNGSVLRLAFSASK--------TADDILSKLSDKNASLE 724 (1019)
Q Consensus 678 ---d~~~~~~it~~~~~~I~ng~Vl~LafSPd~--------~a~~Ilt~~~d~~i~lw 724 (1019)
......+.+......-+.+.|++|.|+|.. .-..++.+..|.++|+.
T Consensus 703 ~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~ 760 (764)
T KOG1063|consen 703 RQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIF 760 (764)
T ss_pred ccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEe
Confidence 222223333333333468899999999983 22234566666666554
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-21 Score=228.16 Aligned_cols=241 Identities=14% Similarity=0.237 Sum_probs=180.3
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE------------EEecccCccEeEEEEcC-CCCceeEEEeecC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV------------RTYYGHRQAVRDICFNN-TGTNFISAIRWFP 402 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~------------~~~~gh~~~V~~i~fsp-dg~~~vs~i~~~p 402 (1019)
..|.....+++ +..+++++.+.....|+...+...+ ..+.+|.+.|.+++|+| ++
T Consensus 21 ~~i~~~~~~~d-~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~----------- 88 (493)
T PTZ00421 21 LNVTPSTALWD-CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDP----------- 88 (493)
T ss_pred eccccccccCC-CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCC-----------
Confidence 34555555664 4556777777777788763322111 24678999999999888 55
Q ss_pred CCCcEEEEEeCCCcEEEEEccCCC------eEEEEEccccccEeEEEEecCC-CEEEEEEcCCeEEEEECCCCceEEEEe
Q psy307 403 KSAHLLLSCSMDCRVKLWEVYKEH------RCVRTYYGHRQAVRDICFNNTG-TNFISAGYDRYLKLWDTESGECISRFT 475 (1019)
Q Consensus 403 ~~~~~L~sgs~Dg~I~IWDl~~~~------~~~~~l~~H~~~V~sl~fspdg-~~l~S~s~Dg~I~lWDl~t~~~i~~~~ 475 (1019)
++|++|+.|++|++||+...+ .++..+.+|...|.+++|+|++ +.|++++.|++|+|||+++++.+..+.
T Consensus 89 ---~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~ 165 (493)
T PTZ00421 89 ---QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK 165 (493)
T ss_pred ---CEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc
Confidence 689999999999999996542 4577889999999999999986 689999999999999999887766554
Q ss_pred cCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccc
Q psy307 476 SRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVA 555 (1019)
Q Consensus 476 ~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~ 555 (1019)
. +...|.+++|+|+|.+|++++.|++|++||++++. .+..+.+|..
T Consensus 166 ~------------------------------h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~---~v~tl~~H~~- 211 (493)
T PTZ00421 166 C------------------------------HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT---IVSSVEAHAS- 211 (493)
T ss_pred C------------------------------CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc---EEEEEecCCC-
Confidence 3 23456778888899999999999999999999873 3466777752
Q ss_pred cceEEEEEcCCCCEEEEEe----CCCeEEEEeCCCCc-eeeeeeccC-CCEEEEEEcCCCCcEEEEEe-CCCcEEEEe
Q psy307 556 GYACSLDFSPDMSYLISGD----ADGKCYIWDWKTTK-LFKKWKAHD-GVCISTLWHPHEPSKVVTAG-WDAATAKVQ 626 (1019)
Q Consensus 556 ~~V~~v~fspdg~~Lasgs----~DG~I~IWDl~t~~-~l~~l~~h~-~~V~sl~~sp~~~~~l~s~s-~Dg~I~iww 626 (1019)
..+..+.|.+++..+++++ .|+.|++||+++.. ++.....+. ..+....|++++ .+++++| .||.|++|.
T Consensus 212 ~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~-~~L~lggkgDg~Iriwd 288 (493)
T PTZ00421 212 AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT-NLLYIGSKGEGNIRCFE 288 (493)
T ss_pred CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCC-CEEEEEEeCCCeEEEEE
Confidence 2345678999888777654 47899999998754 444444333 355666789988 5777776 599997763
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-22 Score=224.70 Aligned_cols=296 Identities=21% Similarity=0.325 Sum_probs=224.8
Q ss_pred CCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEE-
Q psy307 296 YQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRT- 374 (1019)
Q Consensus 296 ~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~- 374 (1019)
.....|+.+..||.|.|++...... .+...++..+..|.+.|..+.|.| +..+|++++.|.++++||+ ...++...
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~f-r~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdv-k~s~l~G~~ 138 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVF-RLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDV-KTSRLVGGR 138 (720)
T ss_pred CccceEEEecCCCceeeecchhhhc-chhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeee-ccceeecce
Confidence 3445677888899999987763321 123345678889999999999999 7889999999999999999 45556655
Q ss_pred -ecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC--------------------------e
Q psy307 375 -YYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH--------------------------R 427 (1019)
Q Consensus 375 -~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~--------------------------~ 427 (1019)
+.||...|.+++|.+..+ ..+++|+.||.|.|||++... +
T Consensus 139 ~~~GH~~SvkS~cf~~~n~-------------~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 139 LNLGHTGSVKSECFMPTNP-------------AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eecccccccchhhhccCCC-------------cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 899999999999988775 789999999999999995332 0
Q ss_pred EEEEEccccccEeE---EEEecCCCEEEEEEc-CCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceee
Q psy307 428 CVRTYYGHRQAVRD---ICFNNTGTNFISAGY-DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYI 503 (1019)
Q Consensus 428 ~~~~l~~H~~~V~s---l~fspdg~~l~S~s~-Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i 503 (1019)
.+.....|...|.+ +.+..|...|+++|. |+.|+|||+++..+........ ...+ ..
T Consensus 206 r~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~---~~~~----------------~t 266 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG---SDKY----------------PT 266 (720)
T ss_pred cccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCc---ccCc----------------cC
Confidence 11222345555665 566678889999888 9999999999876544332110 0000 00
Q ss_pred eCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy307 504 ADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWD 583 (1019)
Q Consensus 504 ~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWD 583 (1019)
.......+.++.....|.+|++.+.|+.|+.|++... ....+..+.++.....-..-..+||+.+|++|+.|+..++|.
T Consensus 267 ~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~-s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~ 345 (720)
T KOG0321|consen 267 HSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL-SISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWV 345 (720)
T ss_pred cccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc-CcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeee
Confidence 0112345677888888999999999999999999864 234556677776544444556799999999999999999999
Q ss_pred CCCCce-eeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEec
Q psy307 584 WKTTKL-FKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQD 627 (1019)
Q Consensus 584 l~t~~~-l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd 627 (1019)
+.+... ...+.+|.-.|++++|.|....-++||+.|.++++|--
T Consensus 346 vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 346 VSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred ecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence 988754 55678999999999999988788999999999988754
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.4e-22 Score=231.54 Aligned_cols=243 Identities=22% Similarity=0.390 Sum_probs=204.6
Q ss_pred CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC
Q psy307 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM 413 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~ 413 (1019)
|...+.+..|.. ..+++++.|++|++||......+...+.||.+.|.++++..-+ .+|++|+.
T Consensus 207 ~~~~~~~~q~~~---~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~--------------~~lvsgS~ 269 (537)
T KOG0274|consen 207 DDHVVLCLQLHD---GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGG--------------DKLVSGST 269 (537)
T ss_pred Ccchhhhheeec---CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCC--------------CEEEEEec
Confidence 667888888873 4899999999999999955444444499999999999998744 69999999
Q ss_pred CCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEe-cCCceEEEEEecCCCee
Q psy307 414 DCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFT-SRKVAYCVKFHPDEDKQ 492 (1019)
Q Consensus 414 Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~-~~~~v~~v~~~p~~~~~ 492 (1019)
|.++++||. ..+.+..++.+|...|.++... +..+++||.|.+|++|++.++.++..+. +...|.++..
T Consensus 270 D~t~rvWd~-~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~------- 339 (537)
T KOG0274|consen 270 DKTERVWDC-STGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQL------- 339 (537)
T ss_pred CCcEEeEec-CCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEe-------
Confidence 999999996 8999999999999999998874 4678889999999999999999999887 4445555444
Q ss_pred eeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEE
Q psy307 493 HLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLIS 572 (1019)
Q Consensus 493 ~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Las 572 (1019)
+ +.++++|+.|++|++||+... .+++.+.||. +.|.++.+.+. .++++
T Consensus 340 ------------------------~--~~~lvsgs~d~~v~VW~~~~~---~cl~sl~gH~--~~V~sl~~~~~-~~~~S 387 (537)
T KOG0274|consen 340 ------------------------D--EPLLVSGSYDGTVKVWDPRTG---KCLKSLSGHT--GRVYSLIVDSE-NRLLS 387 (537)
T ss_pred ------------------------c--CCEEEEEecCceEEEEEhhhc---eeeeeecCCc--ceEEEEEecCc-ceEEe
Confidence 3 779999999999999999966 6779999998 77999988654 89999
Q ss_pred EeCCCeEEEEeCCCC-ceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccc
Q psy307 573 GDADGKCYIWDWKTT-KLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEK 639 (1019)
Q Consensus 573 gs~DG~I~IWDl~t~-~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~ 639 (1019)
|+.|++|++||+.+. +++.++.+|.+.|.++.+.. ..+++++.||+|++| |...........+
T Consensus 388 gs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~---~~Lvs~~aD~~Ik~W-D~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 388 GSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRD---NFLVSSSADGTIKLW-DAEEGECLRTLEG 451 (537)
T ss_pred eeeccceEeecCCchhhhhhhhcCCccccccccccc---ceeEeccccccEEEe-ecccCceeeeecc
Confidence 999999999999999 99999999999998776643 589999999999776 5555555544444
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-22 Score=205.83 Aligned_cols=250 Identities=23% Similarity=0.423 Sum_probs=208.3
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
.+++.|.||.++|+.++-.. +..++.+++.|.+-+||.+ ..+.|+.+|.||.+.|++|.|++.+
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~-Esg~CL~~Y~GH~GSVNsikfh~s~-------------- 202 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADS-TQPICGTASADHTARIWSL-ESGACLATYTGHTGSVNSIKFHNSG-------------- 202 (481)
T ss_pred eehhhhcccccceeeehhhc-CCcceeecccccceeEEee-ccccceeeecccccceeeEEecccc--------------
Confidence 45778999999999999776 4679999999999999999 6789999999999999999999988
Q ss_pred cEEEEEeCCCcEEEEEc------cC---------------------------------CCeEEEEEccccccEeEEEEec
Q psy307 406 HLLLSCSMDCRVKLWEV------YK---------------------------------EHRCVRTYYGHRQAVRDICFNN 446 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl------~~---------------------------------~~~~~~~l~~H~~~V~sl~fsp 446 (1019)
.++++++.|++..||.. .. -..++..+.+|.+.|.+..|..
T Consensus 203 ~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~ 282 (481)
T KOG0300|consen 203 LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA 282 (481)
T ss_pred ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc
Confidence 79999999999999973 10 0135667899999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE
Q psy307 447 TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ 526 (1019)
Q Consensus 447 dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg 526 (1019)
.|+.++++|+|++..+||+++|..+..+.++. +..+.++-+|..+++++.
T Consensus 283 gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd------------------------------~ELtHcstHptQrLVvTs 332 (481)
T KOG0300|consen 283 GGQQMVTASWDRTANLWDVETGEVVNILTGHD------------------------------SELTHCSTHPTQRLVVTS 332 (481)
T ss_pred CcceeeeeeccccceeeeeccCceeccccCcc------------------------------hhccccccCCcceEEEEe
Confidence 99999999999999999999999888776543 456667778999999999
Q ss_pred ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeeeeeccCCCEEEEEE
Q psy307 527 SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTT-KLFKKWKAHDGVCISTLW 605 (1019)
Q Consensus 527 s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~-~~l~~l~~h~~~V~sl~~ 605 (1019)
+.|.+.++||.+. .+..+..|.||. ..|+++.|.-|. .+++|+.|.+|+|||+++. .++.++.. +.+++.++.
T Consensus 333 SrDtTFRLWDFRe--aI~sV~VFQGHt--dtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvav 406 (481)
T KOG0300|consen 333 SRDTTFRLWDFRE--AIQSVAVFQGHT--DTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAV 406 (481)
T ss_pred ccCceeEeccchh--hcceeeeecccc--cceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeec-CCccceeEe
Confidence 9999999999984 356678899998 669999998765 4889999999999999875 45777764 457888888
Q ss_pred cCCCCcEEEEEeCCCcEEEEeccc
Q psy307 606 HPHEPSKVVTAGWDAATAKVQDAN 629 (1019)
Q Consensus 606 sp~~~~~l~s~s~Dg~I~iwwd~~ 629 (1019)
+..+ .+++.-.|+.-+.++|.+
T Consensus 407 s~g~--~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 407 SKGH--PIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred ecCC--ceEEeccCCceEEEEecC
Confidence 8754 355656666554555554
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=209.14 Aligned_cols=269 Identities=20% Similarity=0.269 Sum_probs=219.6
Q ss_pred CeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEeccc
Q psy307 299 RSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGH 378 (1019)
Q Consensus 299 r~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh 378 (1019)
...++|+.|..+.+++... .+.+.+|+||+..|+.+.|+|+ ...+++++.|..|+||.+ ....+......|
T Consensus 232 ~~ilTGG~d~~av~~d~~s-------~q~l~~~~Gh~kki~~v~~~~~-~~~v~~aSad~~i~vws~-~~~s~~~~~~~h 302 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPS-------NQILATLKGHTKKITSVKFHKD-LDTVITASADEIIRVWSV-PLSSEPTSSRPH 302 (506)
T ss_pred CcceecCCCCceEEEecch-------hhhhhhccCcceEEEEEEeccc-hhheeecCCcceEEeecc-ccccCccccccc
Confidence 5678999998888887653 3568899999999999999996 788999999999999998 444466677889
Q ss_pred CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEc-cccccEeEEEEecCCCEEEEEEcC
Q psy307 379 RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYY-GHRQAVRDICFNNTGTNFISAGYD 457 (1019)
Q Consensus 379 ~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~-~H~~~V~sl~fspdg~~l~S~s~D 457 (1019)
..+|+.+..+|.| .+|++++.||+....|++.+........ ...-.+++.+|+|||-.|.+|+.|
T Consensus 303 ~~~V~~ls~h~tg--------------eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d 368 (506)
T KOG0289|consen 303 EEPVTGLSLHPTG--------------EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPD 368 (506)
T ss_pred cccceeeeeccCC--------------cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCC
Confidence 9999999999999 7999999999999999955544443333 233568999999999999999999
Q ss_pred CeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEc
Q psy307 458 RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSA 537 (1019)
Q Consensus 458 g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~ 537 (1019)
+.|+|||+..+..+..|.. |..+|..++|+-+|-||++++.|+.|++||+
T Consensus 369 ~~vkiwdlks~~~~a~Fpg------------------------------ht~~vk~i~FsENGY~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPG------------------------------HTGPVKAISFSENGYWLATAADDGSVKLWDL 418 (506)
T ss_pred ceEEEEEcCCccccccCCC------------------------------CCCceeEEEeccCceEEEEEecCCeEEEEEe
Confidence 9999999988776555543 4577888999999999999999999999999
Q ss_pred cCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCceeeeeeccCCCEEEEEEcCCCCcEEEE
Q psy307 538 LNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWK--TTKLFKKWKAHDGVCISTLWHPHEPSKVVT 615 (1019)
Q Consensus 538 ~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~--t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s 615 (1019)
+... ..+++.-... -.+.++.|.+.|++|+.++.|=+|++++-. +...+..+..|.+..+++.|..+. .++++
T Consensus 419 RKl~---n~kt~~l~~~-~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a-q~l~s 493 (506)
T KOG0289|consen 419 RKLK---NFKTIQLDEK-KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA-QYLAS 493 (506)
T ss_pred hhhc---ccceeecccc-ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccc-eEEee
Confidence 8753 3344433321 248899999999999999887667776633 567788888899999999998876 79999
Q ss_pred EeCCCcEEEE
Q psy307 616 AGWDAATAKV 625 (1019)
Q Consensus 616 ~s~Dg~I~iw 625 (1019)
+|.|..++++
T Consensus 494 ~smd~~l~~~ 503 (506)
T KOG0289|consen 494 TSMDAILRLY 503 (506)
T ss_pred ccchhheEEe
Confidence 9999876543
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=216.73 Aligned_cols=260 Identities=21% Similarity=0.288 Sum_probs=208.0
Q ss_pred CCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEE
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRT 374 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~ 374 (1019)
-+....|++++.|..|++|+..+.. ...+.+|.|-.++|+++.|.++ ++.+++++.|+.+++|++ ...+...+
T Consensus 184 l~~sdtlatgg~Dr~Ik~W~v~~~k-----~~~~~tLaGs~g~it~~d~d~~-~~~~iAas~d~~~r~Wnv-d~~r~~~T 256 (459)
T KOG0288|consen 184 LRNSDTLATGGSDRIIKLWNVLGEK-----SELISTLAGSLGNITSIDFDSD-NKHVIAASNDKNLRLWNV-DSLRLRHT 256 (459)
T ss_pred ccCcchhhhcchhhhhhhhhcccch-----hhhhhhhhccCCCcceeeecCC-CceEEeecCCCceeeeec-cchhhhhh
Confidence 3455679999999999999887644 2467899999999999999996 788888999999999999 66788899
Q ss_pred ecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEE
Q psy307 375 YYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISA 454 (1019)
Q Consensus 375 ~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~ 454 (1019)
+.||+..|+++.|.-.. ..+++|+.|.+|++||+.. ..|..++.. ...+..|+.+ ...++||
T Consensus 257 LsGHtdkVt~ak~~~~~--------------~~vVsgs~DRtiK~WDl~k-~~C~kt~l~-~S~cnDI~~~--~~~~~Sg 318 (459)
T KOG0288|consen 257 LSGHTDKVTAAKFKLSH--------------SRVVSGSADRTIKLWDLQK-AYCSKTVLP-GSQCNDIVCS--ISDVISG 318 (459)
T ss_pred hcccccceeeehhhccc--------------cceeeccccchhhhhhhhh-hheeccccc-cccccceEec--ceeeeec
Confidence 99999999999998766 3599999999999999944 555544432 2334455554 5678999
Q ss_pred EcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeC---------------CCCCcccEEEEcCC
Q psy307 455 GYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIAD---------------PTMHSMPAVTSSPN 519 (1019)
Q Consensus 455 s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~---------------~~~~~i~~v~~spd 519 (1019)
..|++|++||.++..+......++.+.++..++++.......+.+...+.+ ...+..+.+.|||+
T Consensus 319 H~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 319 HFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred ccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence 999999999999999999999999999999988876655432222111111 12344788999999
Q ss_pred CCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy307 520 NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIW 582 (1019)
Q Consensus 520 g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IW 582 (1019)
+.|+++||.||.|+||++.++ +..+.+........|+++.|+|.|.+|++++.++.+.+|
T Consensus 399 ~~YvaAGS~dgsv~iW~v~tg---KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 399 GSYVAAGSADGSVYIWSVFTG---KLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CceeeeccCCCcEEEEEccCc---eEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 999999999999999999987 334555544433469999999999999999999999999
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-22 Score=199.18 Aligned_cols=244 Identities=19% Similarity=0.323 Sum_probs=191.4
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEE-cCCCCcEEEEeeCCCeEEEEecCCCc-E
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRW-FPKSAHLLLSCSMDCRVKLWEVYKER-R 370 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~f-spd~g~lLaSgs~Dg~I~IWdl~~~~-~ 370 (1019)
..||-|+++++.+.|+.|+++...... +.+++.+|+||+++|..++| +|..|.+|||++.||.|.||.-.+++ .
T Consensus 18 ~lDyygkrlATcsSD~tVkIf~v~~n~----~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~ 93 (299)
T KOG1332|consen 18 QLDYYGKRLATCSSDGTVKIFEVRNNG----QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWT 93 (299)
T ss_pred hhhhhcceeeeecCCccEEEEEEcCCC----CceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchh
Confidence 468999999999999999999877543 35789999999999999999 57789999999999999999874332 2
Q ss_pred EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC--eEEEEEccccccEeEEEEecC-
Q psy307 371 CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH--RCVRTYYGHRQAVRDICFNNT- 447 (1019)
Q Consensus 371 ~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~--~~~~~l~~H~~~V~sl~fspd- 447 (1019)
.......|...|++++|.|.+. +-.|++++.||.|.|.+.+..+ ........|.-.|++++|.|.
T Consensus 94 k~~e~~~h~~SVNsV~waphey------------gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~ 161 (299)
T KOG1332|consen 94 KAYEHAAHSASVNSVAWAPHEY------------GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPAS 161 (299)
T ss_pred hhhhhhhhcccceeeccccccc------------ceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcC
Confidence 3445678999999999999763 2579999999999999996652 334566889999999999986
Q ss_pred --C-----------CEEEEEEcCCeEEEEECCCCce--EEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCccc
Q psy307 448 --G-----------TNFISAGYDRYLKLWDTESGEC--ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMP 512 (1019)
Q Consensus 448 --g-----------~~l~S~s~Dg~I~lWDl~t~~~--i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~ 512 (1019)
| +.|+||+.|..|+||+...++- ..++.. |..-+.
T Consensus 162 ~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~------------------------------H~dwVR 211 (299)
T KOG1332|consen 162 APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG------------------------------HKDWVR 211 (299)
T ss_pred CCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh------------------------------cchhhh
Confidence 4 5699999999999999887632 122322 333444
Q ss_pred EEEEcCC----CCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy307 513 AVTSSPN----NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDW 584 (1019)
Q Consensus 513 ~v~~spd----g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl 584 (1019)
.++|.|. -.+||++|.||++.||.............+.... ..+..+.||+.|++|+.++.|..|.+|--
T Consensus 212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~--~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFP--DVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred hhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCC--cceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 5555553 2579999999999999877432323333333333 56889999999999999999999999964
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=219.78 Aligned_cols=314 Identities=14% Similarity=0.179 Sum_probs=240.3
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCC----------CcEEEEeeCCCeEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKS----------AHLLLSCSMDCRVKL 362 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~----------g~lLaSgs~Dg~I~I 362 (1019)
.||.....+.....|..+.+|+.....+ + ...+.+--|+..|+.|.--|.+ ...+.||+.|++|++
T Consensus 331 ~Fdet~~klscVYndhSlYvWDvrD~~k---v-gk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 331 QFDETTDKLSCVYNDHSLYVWDVRDVNK---V-GKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred EecCCCceEEEEEcCceEEEEecccccc---c-cceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 4677777777888899999999876543 1 2345566788888888766621 246999999999999
Q ss_pred EecCCC--cEEE----------------------------------EEecccCccEeEEEEcCCCCceeEEEeecCCCCc
Q psy307 363 WEVYKE--RRCV----------------------------------RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAH 406 (1019)
Q Consensus 363 Wdl~~~--~~~~----------------------------------~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~ 406 (1019)
|++... .... ....+....|++++.+|+| +
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g--------------q 472 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG--------------Q 472 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc--------------c
Confidence 998531 1110 0011223468888888888 7
Q ss_pred EEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecC---CCEEEEEEcCCeEEEEECCCC-ceEEEEecC-CceE
Q psy307 407 LLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT---GTNFISAGYDRYLKLWDTESG-ECISRFTSR-KVAY 481 (1019)
Q Consensus 407 ~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspd---g~~l~S~s~Dg~I~lWDl~t~-~~i~~~~~~-~~v~ 481 (1019)
+|++|..-|+++||++ ..-+....+..|...|.|+.|+.- .+.|++++.|+.|.|+|+... .+++++..+ ..++
T Consensus 473 hLAsGDr~GnlrVy~L-q~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssIT 551 (1080)
T KOG1408|consen 473 HLASGDRGGNLRVYDL-QELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSIT 551 (1080)
T ss_pred eecccCccCceEEEEe-hhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccccee
Confidence 9999999999999999 566677788999999999999852 456999999999999998654 456666654 6788
Q ss_pred EEEEecCCCeee-eccCCCc------------eeee-----CCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccc
Q psy307 482 CVKFHPDEDKQH-LDIPVDM------------KYIA-----DPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKL 543 (1019)
Q Consensus 482 ~v~~~p~~~~~~-~~~~~~~------------~~i~-----~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~ 543 (1019)
++.|.-.+.... +....+. ..+. ......+..+++.|..+++++++.|..|+||++.+++.
T Consensus 552 svKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq- 630 (1080)
T KOG1408|consen 552 SVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ- 630 (1080)
T ss_pred EEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce-
Confidence 999977663221 2111100 0111 11223466899999999999999999999999999844
Q ss_pred cceeEEeccc-cccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcE
Q psy307 544 NRKKTFEGHM-VAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAAT 622 (1019)
Q Consensus 544 ~~~~~l~gh~-~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I 622 (1019)
.+.|+|.. ..+....+...|.|.||++.+.|.++.|+|.-+|+++..+.+|...|+++.|.+|- ..|++.+.||+|
T Consensus 631 --~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC-kHlISvsgDgCI 707 (1080)
T KOG1408|consen 631 --VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDC-KHLISVSGDGCI 707 (1080)
T ss_pred --eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccc-hhheeecCCceE
Confidence 46666543 23778889999999999999999999999999999999999999999999999998 689999999999
Q ss_pred EEEeccc
Q psy307 623 AKVQDAN 629 (1019)
Q Consensus 623 ~iwwd~~ 629 (1019)
.+|.-..
T Consensus 708 FvW~lp~ 714 (1080)
T KOG1408|consen 708 FVWKLPL 714 (1080)
T ss_pred EEEECch
Confidence 8885443
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=209.09 Aligned_cols=239 Identities=19% Similarity=0.306 Sum_probs=207.2
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
.+++++...|. ...+++|+.|..+.++|. ...+.+.++.||...|+.+.++++. ..+++++.|.
T Consensus 220 pgi~ald~~~s-~~~ilTGG~d~~av~~d~-~s~q~l~~~~Gh~kki~~v~~~~~~--------------~~v~~aSad~ 283 (506)
T KOG0289|consen 220 PGITALDIIPS-SSKILTGGEDKTAVLFDK-PSNQILATLKGHTKKITSVKFHKDL--------------DTVITASADE 283 (506)
T ss_pred CCeeEEeecCC-CCcceecCCCCceEEEec-chhhhhhhccCcceEEEEEEeccch--------------hheeecCCcc
Confidence 36888888885 678999999999999998 5667889999999999999999988 6889999999
Q ss_pred cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeec
Q psy307 416 RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLD 495 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~ 495 (1019)
.|+||.. ...........|..+|+.+..+|.|.||++++.|++..+.|+++|.++.......
T Consensus 284 ~i~vws~-~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~----------------- 345 (506)
T KOG0289|consen 284 IIRVWSV-PLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDET----------------- 345 (506)
T ss_pred eEEeecc-ccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecc-----------------
Confidence 9999999 4455777888999999999999999999999999999999999998876655421
Q ss_pred cCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC
Q psy307 496 IPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA 575 (1019)
Q Consensus 496 ~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~ 575 (1019)
..-.+++.+|||||..|.+|+.||.|+|||+.+. .....|.+|. ++|..++|+.+|-||++++.
T Consensus 346 -----------s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~---~~~a~Fpght--~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 346 -----------SDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ---TNVAKFPGHT--GPVKAISFSENGYWLATAAD 409 (506)
T ss_pred -----------ccceeEEeeEcCCceEEeccCCCceEEEEEcCCc---cccccCCCCC--CceeEEEeccCceEEEEEec
Confidence 1234567888999999999999999999999987 4567888988 88999999999999999999
Q ss_pred CCeEEEEeCCCCceeeeeeccC-CCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 576 DGKCYIWDWKTTKLFKKWKAHD-GVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 576 DG~I~IWDl~t~~~l~~l~~h~-~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
|+.|++||++..+.+.++.-.. ..|.++.|.+.| .+++.+|.|=.|+++
T Consensus 410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 410 DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSG-TYLGIAGSDLQVYIC 459 (506)
T ss_pred CCeEEEEEehhhcccceeeccccccceeEEEcCCC-CeEEeecceeEEEEE
Confidence 9999999999999888887543 379999999988 688888887666554
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-22 Score=198.53 Aligned_cols=264 Identities=19% Similarity=0.288 Sum_probs=194.5
Q ss_pred eeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc--EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER--RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 330 ~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~--~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
.-++|.+.|..+...- .|..|+||+.|++|||+.+..++ .++.++.||.++|..++|.. |..+.+
T Consensus 6 idt~H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wah------------Pk~G~i 72 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAH------------PKFGTI 72 (299)
T ss_pred hhhhhhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecc------------cccCcE
Confidence 3467888998888766 58999999999999999997665 68889999999999999974 444589
Q ss_pred EEEEeCCCcEEEEEccCCC-eEEEEEccccccEeEEEEecC--CCEEEEEEcCCeEEEEECCCC-c-eEEEE--ecCCce
Q psy307 408 LLSCSMDCRVKLWEVYKEH-RCVRTYYGHRQAVRDICFNNT--GTNFISAGYDRYLKLWDTESG-E-CISRF--TSRKVA 480 (1019)
Q Consensus 408 L~sgs~Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~fspd--g~~l~S~s~Dg~I~lWDl~t~-~-~i~~~--~~~~~v 480 (1019)
|++++.||.|.||.-..+. ........|...|++++|.|. |-.|++++.||.|.|.+.+.. . ....+ .+.-.+
T Consensus 73 LAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gv 152 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGV 152 (299)
T ss_pred eeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccc
Confidence 9999999999999974332 234456789999999999986 456899999999999987654 1 11111 122345
Q ss_pred EEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEE
Q psy307 481 YCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560 (1019)
Q Consensus 481 ~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~ 560 (1019)
.+++|.|....- ..+.... ...-+.|++|+.|+.|+||+..+. ......++.+|. ..|..
T Consensus 153 nsVswapa~~~g--------~~~~~~~---------~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~--dwVRD 212 (299)
T KOG1332|consen 153 NSVSWAPASAPG--------SLVDQGP---------AAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHK--DWVRD 212 (299)
T ss_pred ceeeecCcCCCc--------cccccCc---------ccccceeeccCCccceeeeecCCc-chhhhhhhhhcc--hhhhh
Confidence 566665542100 0000000 001267999999999999999875 334445688998 88999
Q ss_pred EEEcCCC----CEEEEEeCCCeEEEEeCCCC-c--eeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEec
Q psy307 561 LDFSPDM----SYLISGDADGKCYIWDWKTT-K--LFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQD 627 (1019)
Q Consensus 561 v~fspdg----~~Lasgs~DG~I~IWDl~t~-~--~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd 627 (1019)
++|.|.- .+||+++.||++.||..... . ....++.....+..+.|++.| ..|+.++.|+.+.+|-.
T Consensus 213 VAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 213 VAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSG-NILAVSGGDNKVTLWKE 285 (299)
T ss_pred hhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccc-cEEEEecCCcEEEEEEe
Confidence 9999964 47999999999999986522 1 111223345689999999998 68898999999988743
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.2e-21 Score=218.19 Aligned_cols=398 Identities=14% Similarity=0.170 Sum_probs=275.3
Q ss_pred eecccCCCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecC
Q psy307 287 ILHIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVY 366 (1019)
Q Consensus 287 ~~~~~~~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~ 366 (1019)
|..+.++..|-.+ ++.|..+|.++||+.. .++.+++++++...|+++.-+|- -..++.|..+|+|.|+++
T Consensus 162 Ital~HP~TYLNK-IvvGs~~G~lql~Nvr-------t~K~v~~f~~~~s~IT~ieqsPa-LDVVaiG~~~G~ViifNl- 231 (910)
T KOG1539|consen 162 ITALLHPSTYLNK-IVVGSSQGRLQLWNVR-------TGKVVYTFQEFFSRITAIEQSPA-LDVVAIGLENGTVIIFNL- 231 (910)
T ss_pred eeeEecchhheee-EEEeecCCcEEEEEec-------cCcEEEEecccccceeEeccCCc-ceEEEEeccCceEEEEEc-
Confidence 4444455556554 6678889999999876 46789999999999999999994 789999999999999999
Q ss_pred CCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec
Q psy307 367 KERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN 446 (1019)
Q Consensus 367 ~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp 446 (1019)
...+.+.+++...+.|++++|..||. .++++|+..|.+.+||+............|.+.|....|.|
T Consensus 232 K~dkil~sFk~d~g~VtslSFrtDG~-------------p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~ 298 (910)
T KOG1539|consen 232 KFDKILMSFKQDWGRVTSLSFRTDGN-------------PLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP 298 (910)
T ss_pred ccCcEEEEEEccccceeEEEeccCCC-------------eeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC
Confidence 55567778876569999999999996 68999999999999999655555566679999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCc----eEEEEec-CCceEEEEEecCCCeeeeccCC-----------------------
Q psy307 447 TGTNFISAGYDRYLKLWDTESGE----CISRFTS-RKVAYCVKFHPDEDKQHLDIPV----------------------- 498 (1019)
Q Consensus 447 dg~~l~S~s~Dg~I~lWDl~t~~----~i~~~~~-~~~v~~v~~~p~~~~~~~~~~~----------------------- 498 (1019)
....+++++.|..+++|=.+++. .++.-.+ ..++.|+.|.-......+....
T Consensus 299 ~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~ 378 (910)
T KOG1539|consen 299 GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHN 378 (910)
T ss_pred CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccc
Confidence 99999999999999998655443 2222223 3677888887443333220000
Q ss_pred -------CceeeeCCCCCcccEEEEcC-----CCCEEEEEecCCeEEEEEccCcccccceeEEecc---ccccceEEEEE
Q psy307 499 -------DMKYIADPTMHSMPAVTSSP-----NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGH---MVAGYACSLDF 563 (1019)
Q Consensus 499 -------~~~~i~~~~~~~i~~v~~sp-----dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh---~~~~~V~~v~f 563 (1019)
...........+|..+++.. ..+.+++.-.+..++.|+.++...- ...+... .....+++++.
T Consensus 379 ~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G--~~~L~~~~~~~~~~~~~av~v 456 (910)
T KOG1539|consen 379 KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSG--RHVLDPKRFKKDDINATAVCV 456 (910)
T ss_pred ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccc--cEEecCccccccCcceEEEEE
Confidence 00000111122344444432 2345666666779999999865321 1111111 13366899999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeeee---eccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeecc-c
Q psy307 564 SPDMSYLISGDADGKCYIWDWKTTKLFKKW---KAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEME-K 639 (1019)
Q Consensus 564 spdg~~Lasgs~DG~I~IWDl~t~~~l~~l---~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~-~ 639 (1019)
++.|++.+.|.+.|.|-+|++++|-...++ .+|.++|++++....+ +.++++|.+|-++. |+.+-........ +
T Consensus 457 s~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkf-w~f~~k~l~~~l~l~ 534 (910)
T KOG1539|consen 457 SFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKF-WDFKKKVLKKSLRLG 534 (910)
T ss_pred eccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCC-ceEEEccCcceEEE-EecCCcceeeeeccC
Confidence 999999999999999999999999988888 5899999999998776 69999999998855 5554433222211 1
Q ss_pred cCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccc-----cCCceEEEEecCCccHHHHHh
Q psy307 640 QVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEI-----KNGSVLRLAFSASKTADDILS 714 (1019)
Q Consensus 640 ~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I-----~ng~Vl~LafSPd~~a~~Ilt 714 (1019)
.....+.+ +. .+.+.. +..+. +. ..++....+..+ |.+.|++++||||+ +-|++
T Consensus 535 ~~~~~iv~-hr--~s~l~a-------~~~dd-f~--------I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg--rWlis 593 (910)
T KOG1539|consen 535 SSITGIVY-HR--VSDLLA-------IALDD-FS--------IRVVDVVTRKVVREFWGHGNRITDMTFSPDG--RWLIS 593 (910)
T ss_pred CCcceeee-ee--hhhhhh-------hhcCc-ee--------EEEEEchhhhhhHHhhccccceeeeEeCCCC--cEEEE
Confidence 11111111 11 010000 00011 11 112222222222 78999999999999 99999
Q ss_pred hcCCCchhhHHHHHHhhh
Q psy307 715 KLSDKNASLEEKTAAEFY 732 (1019)
Q Consensus 715 ~~~d~~i~lw~~~~~e~~ 732 (1019)
++-|++||+|+.+..-+|
T Consensus 594 asmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 594 ASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred eecCCcEEEEeccCccee
Confidence 999999999997655443
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-21 Score=198.77 Aligned_cols=285 Identities=17% Similarity=0.239 Sum_probs=204.4
Q ss_pred cCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC----cEEEEEecccCccEeEEEEcCCCCceeEE
Q psy307 322 FLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE----RRCVRTYYGHRQAVRDICFNNTGTNFISA 397 (1019)
Q Consensus 322 ~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~----~~~~~~~~gh~~~V~~i~fspdg~~~vs~ 397 (1019)
+..+-.+.+|+||.+.|++++|+.+ |..|+|++.|++|+||++..- .++++.--. -+.-+ .
T Consensus 73 f~Hpl~~~~LKgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve-~dhpT-------------~ 137 (420)
T KOG2096|consen 73 FVHPLNVSVLKGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE-YDHPT-------------R 137 (420)
T ss_pred cccchhhhhhhccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhhcccc-CCCce-------------E
Confidence 3344456789999999999999996 899999999999999998531 122221100 01223 3
Q ss_pred EeecCCCCcEEEEEeCCCcEEEEEccCCC--eE---------EEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECC
Q psy307 398 IRWFPKSAHLLLSCSMDCRVKLWEVYKEH--RC---------VRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTE 466 (1019)
Q Consensus 398 i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~--~~---------~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~ 466 (1019)
+.|.|+...++++.-...++++|.+.... .. ...-..|...|..+-....+.+|+|++.|.+|.|||++
T Consensus 138 V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk 217 (420)
T KOG2096|consen 138 VVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK 217 (420)
T ss_pred EEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC
Confidence 44555555777788888889999873221 11 11224467778888888888999999999999999998
Q ss_pred CCceEEEEecC-CceEEEEEecCCCeeeecc-CC------------------CceeeeCCCCCcccEEEEcCCCCEEEEE
Q psy307 467 SGECISRFTSR-KVAYCVKFHPDEDKQHLDI-PV------------------DMKYIADPTMHSMPAVTSSPNNKWLACQ 526 (1019)
Q Consensus 467 t~~~i~~~~~~-~~v~~v~~~p~~~~~~~~~-~~------------------~~~~i~~~~~~~i~~v~~spdg~~Lasg 526 (1019)
|+.+..+... ..-+..+.+|+|..++... .. ........|...|..++|+++...+++.
T Consensus 218 -Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv 296 (420)
T KOG2096|consen 218 -GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV 296 (420)
T ss_pred -CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence 8888888654 4556678888887665511 11 1112334577789999999999999999
Q ss_pred ecCCeEEEEEccCccc----ccceeEE--eccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee-ccCCC
Q psy307 527 SMDNKILIFSALNRFK----LNRKKTF--EGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK-AHDGV 599 (1019)
Q Consensus 527 s~Dg~I~iwd~~~~~~----~~~~~~l--~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~-~h~~~ 599 (1019)
|.||+++|||+.-... ...++.. .-|..++..+.+..+|.|+.||... ...|+++..++|+.+..++ .|.+.
T Consensus 297 SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~ 375 (420)
T KOG2096|consen 297 SKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTT 375 (420)
T ss_pred ecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCc
Confidence 9999999999864321 1112222 1223335566899999999888764 4479999999998888775 79999
Q ss_pred EEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 600 CISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 600 V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
|.+++|+++| .+++||| |..++++
T Consensus 376 Is~is~~~~g-~~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 376 ISSISYSSDG-KYIATCG-DRYVRVI 399 (420)
T ss_pred eeeEEecCCC-cEEeeec-ceeeeee
Confidence 9999999999 6888887 4566555
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-21 Score=210.99 Aligned_cols=234 Identities=20% Similarity=0.287 Sum_probs=189.2
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.+..+|+.++.|...|.|++++..+ ...+..+.+|+.+|..+.|+|.++..|++|+.|+.+++||+.+ ....
T Consensus 75 ~fR~DG~LlaaGD~sG~V~vfD~k~-------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-a~v~ 146 (487)
T KOG0310|consen 75 DFRSDGRLLAAGDESGHVKVFDMKS-------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST-AYVQ 146 (487)
T ss_pred EeecCCeEEEccCCcCcEEEecccc-------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC-cEEE
Confidence 4567899999999999999998442 3467889999999999999999999999999999999999954 4456
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
..+.+|+..|+|.+|+|... ++++|||.||+|++||++.....+.. ..|..+|..+.+-|.|..|+
T Consensus 147 ~~l~~htDYVR~g~~~~~~~-------------hivvtGsYDg~vrl~DtR~~~~~v~e-lnhg~pVe~vl~lpsgs~ia 212 (487)
T KOG0310|consen 147 AELSGHTDYVRCGDISPAND-------------HIVVTGSYDGKVRLWDTRSLTSRVVE-LNHGCPVESVLALPSGSLIA 212 (487)
T ss_pred EEecCCcceeEeeccccCCC-------------eEEEecCCCceEEEEEeccCCceeEE-ecCCCceeeEEEcCCCCEEE
Confidence 68999999999998887653 79999999999999999766644444 46899999999999999999
Q ss_pred EEEcCCeEEEEECCCCce-EEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCe
Q psy307 453 SAGYDRYLKLWDTESGEC-ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNK 531 (1019)
Q Consensus 453 S~s~Dg~I~lWDl~t~~~-i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~ 531 (1019)
+++. ..|++||+-+|.. +..+. .|...|+|+.+..++..|++|+-|+.
T Consensus 213 sAgG-n~vkVWDl~~G~qll~~~~------------------------------~H~KtVTcL~l~s~~~rLlS~sLD~~ 261 (487)
T KOG0310|consen 213 SAGG-NSVKVWDLTTGGQLLTSMF------------------------------NHNKTVTCLRLASDSTRLLSGSLDRH 261 (487)
T ss_pred EcCC-CeEEEEEecCCceehhhhh------------------------------cccceEEEEEeecCCceEeecccccc
Confidence 8874 6799999986643 32222 13345566666677899999999999
Q ss_pred EEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy307 532 ILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWK 585 (1019)
Q Consensus 532 I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~ 585 (1019)
+++||+.+. +...+-.-.++|.+++.+||++.++.|-.+|.+.+-+..
T Consensus 262 VKVfd~t~~------Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 262 VKVFDTTNY------KVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred eEEEEccce------EEEEeeecccceeeEEecCCCceEEEecccceeeeehhh
Confidence 999997654 222233334789999999999999999999988776443
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-21 Score=195.47 Aligned_cols=230 Identities=20% Similarity=0.329 Sum_probs=193.5
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeE-EEEEccccccEeEEEEecC-CCE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRC-VRTYYGHRQAVRDICFNNT-GTN 450 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~-~~~l~~H~~~V~sl~fspd-g~~ 450 (1019)
+.+.+|.+.|.+++|+.+| ..|++|+.|+++.+|++...... -....+|.+.|-.++|+|. ...
T Consensus 14 r~~~~~~~~v~Sv~wn~~g--------------~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~ 79 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDG--------------TKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDL 79 (313)
T ss_pred HHhhhhhhcceEEEEcccC--------------ceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcc
Confidence 5578899999999999999 68999999999999999544221 2345789999999999874 567
Q ss_pred EEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCC----------CCCcccEEEEcCCC
Q psy307 451 FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADP----------TMHSMPAVTSSPNN 520 (1019)
Q Consensus 451 l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~----------~~~~i~~v~~spdg 520 (1019)
|++++.|.+|++||++.++++........-..+.|+|++...++....+.....+. ....+.-++|+.++
T Consensus 80 ~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~n 159 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSN 159 (313)
T ss_pred eEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCC
Confidence 99999999999999999999999998888888999999998877444333322222 23346678899888
Q ss_pred CEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCE
Q psy307 521 KWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVC 600 (1019)
Q Consensus 521 ~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V 600 (1019)
.+++.....|.|.|.....- +++..+..|. ....||.|+|+|+|+|+|+.|-.+.+||+..--+++.+..++-+|
T Consensus 160 d~Fflt~GlG~v~ILsypsL---kpv~si~AH~--snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpV 234 (313)
T KOG1407|consen 160 DLFFLTNGLGCVEILSYPSL---KPVQSIKAHP--SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPV 234 (313)
T ss_pred CEEEEecCCceEEEEecccc---ccccccccCC--cceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCce
Confidence 88888888899999887643 6678888887 557789999999999999999999999999998999999999999
Q ss_pred EEEEEcCCCCcEEEEEeCCCcE
Q psy307 601 ISTLWHPHEPSKVVTAGWDAAT 622 (1019)
Q Consensus 601 ~sl~~sp~~~~~l~s~s~Dg~I 622 (1019)
..+.|+.+| ++|+++|.|..|
T Consensus 235 RTlSFS~dg-~~lASaSEDh~I 255 (313)
T KOG1407|consen 235 RTLSFSHDG-RMLASASEDHFI 255 (313)
T ss_pred EEEEeccCc-ceeeccCccceE
Confidence 999999998 799999999776
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=211.29 Aligned_cols=228 Identities=21% Similarity=0.341 Sum_probs=196.4
Q ss_pred CCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC
Q psy307 335 TKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD 414 (1019)
Q Consensus 335 ~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D 414 (1019)
.++|.|++-+|. |.+|+.|+..|.|.+|.+ ..+.++..+.+|-..|+|+.|+.|| .+|+|||.|
T Consensus 81 Pg~v~al~s~n~-G~~l~ag~i~g~lYlWel-ssG~LL~v~~aHYQ~ITcL~fs~dg--------------s~iiTgskD 144 (476)
T KOG0646|consen 81 PGPVHALASSNL-GYFLLAGTISGNLYLWEL-SSGILLNVLSAHYQSITCLKFSDDG--------------SHIITGSKD 144 (476)
T ss_pred ccceeeeecCCC-ceEEEeecccCcEEEEEe-ccccHHHHHHhhccceeEEEEeCCC--------------cEEEecCCC
Confidence 468999999995 899999989999999999 7778888999999999999999999 699999999
Q ss_pred CcEEEEEcc--------CCCeEEEEEccccccEeEEEEecCC--CEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEE
Q psy307 415 CRVKLWEVY--------KEHRCVRTYYGHRQAVRDICFNNTG--TNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVK 484 (1019)
Q Consensus 415 g~I~IWDl~--------~~~~~~~~l~~H~~~V~sl~fspdg--~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~ 484 (1019)
|.|.+|++. ....+.+.+..|.-+|+++...+.| .+++|+|.|.++++||+..|..+.++..+..
T Consensus 145 g~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~s----- 219 (476)
T KOG0646|consen 145 GAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSS----- 219 (476)
T ss_pred ccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCc-----
Confidence 999999983 2456788999999999999887653 5799999999999999999998887776543
Q ss_pred EecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcc-------------cccceeEEec
Q psy307 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRF-------------KLNRKKTFEG 551 (1019)
Q Consensus 485 ~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~-------------~~~~~~~l~g 551 (1019)
+.+++++|.+..+.+|+.+|.|.+.++.... ....+..+.|
T Consensus 220 --------------------------i~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G 273 (476)
T KOG0646|consen 220 --------------------------IKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG 273 (476)
T ss_pred --------------------------ceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecc
Confidence 4556667788899999999999988875432 1123566889
Q ss_pred cccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCC
Q psy307 552 HMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609 (1019)
Q Consensus 552 h~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~ 609 (1019)
|.....|+|++++-||.+|++|+.||.++|||+.+.++++++....++|+.+.+.|-.
T Consensus 274 h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 274 HENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred ccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 9876689999999999999999999999999999999999998778899999997754
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-21 Score=214.19 Aligned_cols=319 Identities=19% Similarity=0.258 Sum_probs=232.1
Q ss_pred cCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeec
Q psy307 322 FLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 322 ~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
..|..+-..++||++.|.||...| +|.+|++|+.||+|+||.+ .+++|++++.- .+.|.||+|+|.+...|.+++.-
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi-~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~ 463 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEI-ATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVG 463 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEe-ecceEEEEEee-cceeEEEEecCCCCceeEEEEec
Confidence 356788889999999999999999 6999999999999999999 67788888764 45799999999987666554421
Q ss_pred -------CCC---------CcEEEEE----eCCCcEEEEEccC---CCeEEEEEccccccEeEEEEecCCCEEEEEEcC-
Q psy307 402 -------PKS---------AHLLLSC----SMDCRVKLWEVYK---EHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD- 457 (1019)
Q Consensus 402 -------p~~---------~~~L~sg----s~Dg~I~IWDl~~---~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~D- 457 (1019)
|.- ..+|+++ ..++.+..|.-.. ...-++..-.|...|..+.|+..|.+|++...+
T Consensus 464 ~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~ 543 (733)
T KOG0650|consen 464 ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS 543 (733)
T ss_pred CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCC
Confidence 111 1233333 3466778887531 222356677899999999999999999988765
Q ss_pred --CeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEE
Q psy307 458 --RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIF 535 (1019)
Q Consensus 458 --g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iw 535 (1019)
..|.|.++.......-|.. ..+.+.++.|+|...+|++++ ...|+||
T Consensus 544 ~~~~VliHQLSK~~sQ~PF~k------------------------------skG~vq~v~FHPs~p~lfVaT-q~~vRiY 592 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQSPFRK------------------------------SKGLVQRVKFHPSKPYLFVAT-QRSVRIY 592 (733)
T ss_pred CcceEEEEecccccccCchhh------------------------------cCCceeEEEecCCCceEEEEe-ccceEEE
Confidence 4588888766554433321 123445566666777787776 5789999
Q ss_pred EccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeeeeeccCCCEEEEEEcCCCCcEEE
Q psy307 536 SALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKT-TKLFKKWKAHDGVCISTLWHPHEPSKVV 614 (1019)
Q Consensus 536 d~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t-~~~l~~l~~h~~~V~sl~~sp~~~~~l~ 614 (1019)
|+...... +.+... .-+|..++++|.|.-|+.|+.|+.++.+|+.- .+++++++.|...+.+++||+.-+ +++
T Consensus 593 dL~kqelv---KkL~tg--~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP-Lfa 666 (733)
T KOG0650|consen 593 DLSKQELV---KKLLTG--SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP-LFA 666 (733)
T ss_pred ehhHHHHH---HHHhcC--CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc-eee
Confidence 99865322 222221 25689999999999999999999999999975 478899999999999999999885 999
Q ss_pred EEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEecccccccc
Q psy307 615 TAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIK 694 (1019)
Q Consensus 615 s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ 694 (1019)
+|+.||++.+++..-+.... + ++..+- +-..+......
T Consensus 667 s~sdDgtv~Vfhg~VY~Dl~-----------q---------------------npliVP----------lK~L~gH~~~~ 704 (733)
T KOG0650|consen 667 SGSDDGTVIVFHGMVYNDLL-----------Q---------------------NPLIVP----------LKRLRGHEKTN 704 (733)
T ss_pred eecCCCcEEEEeeeeehhhh-----------c---------------------CCceEe----------eeeccCceeec
Confidence 99999999887433211110 0 011010 11111122234
Q ss_pred CCceEEEEecCCccHHHHHhhcCCCchhhH
Q psy307 695 NGSVLRLAFSASKTADDILSKLSDKNASLE 724 (1019)
Q Consensus 695 ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw 724 (1019)
+..|+...|+|.. .-++++..||+||||
T Consensus 705 ~~gVLd~~wHP~q--pWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 705 DLGVLDTIWHPRQ--PWLFSAGADGTIRLF 732 (733)
T ss_pred ccceEeecccCCC--ceEEecCCCceEEee
Confidence 6679999999999 899999999999998
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.8e-21 Score=196.10 Aligned_cols=261 Identities=19% Similarity=0.301 Sum_probs=204.0
Q ss_pred CCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC
Q psy307 335 TKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD 414 (1019)
Q Consensus 335 ~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D 414 (1019)
...|+.+.|+|. +..|+.++.||++++||+... .++..-.|..++.+++|.++. .+++|+.|
T Consensus 13 ~d~IS~v~f~~~-~~~LLvssWDgslrlYdv~~~--~l~~~~~~~~plL~c~F~d~~---------------~~~~G~~d 74 (323)
T KOG1036|consen 13 EDGISSVKFSPS-SSDLLVSSWDGSLRLYDVPAN--SLKLKFKHGAPLLDCAFADES---------------TIVTGGLD 74 (323)
T ss_pred hhceeeEEEcCc-CCcEEEEeccCcEEEEeccch--hhhhheecCCceeeeeccCCc---------------eEEEeccC
Confidence 468999999985 566667779999999999544 334444689999999999864 69999999
Q ss_pred CcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeee
Q psy307 415 CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL 494 (1019)
Q Consensus 415 g~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~ 494 (1019)
|.|+.+|+..+ ....+..|..+|.||.+++....+++||+|++|++||.+...+...+...+.|.++....+ .+++
T Consensus 75 g~vr~~Dln~~--~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~--~LvV 150 (323)
T KOG1036|consen 75 GQVRRYDLNTG--NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGN--RLVV 150 (323)
T ss_pred ceEEEEEecCC--cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCC--EEEE
Confidence 99999999443 3445677999999999999888999999999999999998778888888888888876543 2222
Q ss_pred ----------ccCCCceee---eCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCc-ccccceeEEecccc------
Q psy307 495 ----------DIPVDMKYI---ADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNR-FKLNRKKTFEGHMV------ 554 (1019)
Q Consensus 495 ----------~~~~~~~~i---~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~-~~~~~~~~l~gh~~------ 554 (1019)
+.+.-.... ...-...+.++++-|++.-++++|-||.|.+=.+... ........|+.|..
T Consensus 151 g~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~ 230 (323)
T KOG1036|consen 151 GTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTE 230 (323)
T ss_pred eecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCce
Confidence 222111111 2223455789999999999999999999988665543 22233455666642
Q ss_pred -ccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeC
Q psy307 555 -AGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGW 618 (1019)
Q Consensus 555 -~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~ 618 (1019)
.-+|++++|+|-...++||+.||.|.+||+.+.+.+..+......|.+++|+.+| ..||.++.
T Consensus 231 ~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG-~~LAia~s 294 (323)
T KOG1036|consen 231 IIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDG-SLLAIASS 294 (323)
T ss_pred EEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCC-CeEEEEec
Confidence 2468999999999999999999999999999999999998777789999999999 57777763
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-21 Score=219.58 Aligned_cols=234 Identities=21% Similarity=0.308 Sum_probs=200.6
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeecc-CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEG-HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC 371 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~g-H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~ 371 (1019)
.+.++|+.++.|..++.|.||+.... +.+.++.+ |...|-+++|. +..+.+|+.||.|..+|+......
T Consensus 224 ~ws~~G~~LavG~~~g~v~iwD~~~~-------k~~~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 224 KWSPDGSHLAVGTSDGTVQIWDVKEQ-------KKTRTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred EECCCCCEEEEeecCCeEEEEehhhc-------cccccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhh
Confidence 46889999999999999999987632 45678888 99999999997 568999999999999999766666
Q ss_pred EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecC-CCE
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT-GTN 450 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspd-g~~ 450 (1019)
..++.+|...|..+.|++|+ .++++|+.|+.+.|||. ....+...+..|.++|.+++|+|- ...
T Consensus 294 ~~~~~~H~qeVCgLkws~d~--------------~~lASGgnDN~~~Iwd~-~~~~p~~~~~~H~aAVKA~awcP~q~~l 358 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSPDG--------------NQLASGGNDNVVFIWDG-LSPEPKFTFTEHTAAVKALAWCPWQSGL 358 (484)
T ss_pred hhhhhcccceeeeeEECCCC--------------CeeccCCCccceEeccC-CCccccEEEeccceeeeEeeeCCCccCc
Confidence 66689999999999999999 79999999999999999 777888999999999999999995 446
Q ss_pred EEEEE--cCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEE--E
Q psy307 451 FISAG--YDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLAC--Q 526 (1019)
Q Consensus 451 l~S~s--~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Las--g 526 (1019)
||+|+ .|++|++||+.+|..+..+.....|.++.|++ ..+-|++ |
T Consensus 359 LAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk-------------------------------~~kEi~sthG 407 (484)
T KOG0305|consen 359 LATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSK-------------------------------KYKELLSTHG 407 (484)
T ss_pred eEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcC-------------------------------CCCEEEEecC
Confidence 77764 69999999999999998887776666665554 4444444 4
Q ss_pred ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy307 527 SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTT 587 (1019)
Q Consensus 527 s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~ 587 (1019)
..++.|.||+..+. .....+.+|. ..|..+++||||..+++|+.|.++++|++-..
T Consensus 408 ~s~n~i~lw~~ps~---~~~~~l~gH~--~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 408 YSENQITLWKYPSM---KLVAELLGHT--SRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCcEEEEecccc---ceeeeecCCc--ceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 56789999999874 5668899998 66999999999999999999999999998664
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.3e-22 Score=224.30 Aligned_cols=240 Identities=17% Similarity=0.289 Sum_probs=198.2
Q ss_pred CCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEe
Q psy307 296 YQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTY 375 (1019)
Q Consensus 296 ~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~ 375 (1019)
....++++....|.|.+|+...+.+ .+++..|..|+..|+++.|++-..++|+|||.||+|++||+. ......++
T Consensus 98 ~~~NlIAT~s~nG~i~vWdlnk~~r----nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR-~~~S~~t~ 172 (839)
T KOG0269|consen 98 LYSNLIATCSTNGVISVWDLNKSIR----NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR-SKKSKSTF 172 (839)
T ss_pred chhhhheeecCCCcEEEEecCcccc----chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee-cccccccc
Confidence 3456789999999999999885433 467889999999999999999889999999999999999994 44556677
Q ss_pred cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEE
Q psy307 376 YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG 455 (1019)
Q Consensus 376 ~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s 455 (1019)
.+....|+++.|+|.. +..++++...|.+++||++...++...+.+|.++|.|+.|+|++.+|+|||
T Consensus 173 ~~nSESiRDV~fsp~~-------------~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG 239 (839)
T KOG0269|consen 173 RSNSESIRDVKFSPGY-------------GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG 239 (839)
T ss_pred cccchhhhceeeccCC-------------CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC
Confidence 7888899999888754 378999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEECCCCc--eEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEe--cCCe
Q psy307 456 YDRYLKLWDTESGE--CISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQS--MDNK 531 (1019)
Q Consensus 456 ~Dg~I~lWDl~t~~--~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs--~Dg~ 531 (1019)
.|++|+|||..+++ .+.++....++.+++|-|... ..|++++ .|-.
T Consensus 240 RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~------------------------------~hLAtcsmv~dts 289 (839)
T KOG0269|consen 240 RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARS------------------------------YHLATCSMVVDTS 289 (839)
T ss_pred CCccEEEEeccCCCccceeEEeecceeeeeeeccCcc------------------------------chhhhhhccccce
Confidence 99999999998664 455666667777777777632 3456655 4679
Q ss_pred EEEEEccCcccccceeEEeccccccceEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC
Q psy307 532 ILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP-DMSYLISGDADGKCYIWDWKTT 587 (1019)
Q Consensus 532 I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp-dg~~Lasgs~DG~I~IWDl~t~ 587 (1019)
|+|||++..+ .+..++..|. ..++.++|.. |...+.+++.||+|..-.++.+
T Consensus 290 V~VWDvrRPY--IP~~t~~eH~--~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 290 VHVWDVRRPY--IPYATFLEHT--DSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred EEEEeecccc--ccceeeeccC--ccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 9999998764 4567888888 5688999965 4557888999998766555443
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=194.68 Aligned_cols=267 Identities=19% Similarity=0.309 Sum_probs=211.4
Q ss_pred eeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEec------CCC-----
Q psy307 300 SFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEV------YKE----- 368 (1019)
Q Consensus 300 ~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl------~~~----- 368 (1019)
.+.+++.|.+-.+|... ..+++.++.||.+.|++|+|++ .+.++++++.|++-.||.. ..+
T Consensus 162 i~gtASADhTA~iWs~E-------sg~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~ 233 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLE-------SGACLATYTGHTGSVNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSD 233 (481)
T ss_pred ceeecccccceeEEeec-------cccceeeecccccceeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCCCCC
Confidence 56788999999999876 4578889999999999999999 5999999999999999972 100
Q ss_pred ----------------------------cEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEE
Q psy307 369 ----------------------------RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLW 420 (1019)
Q Consensus 369 ----------------------------~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IW 420 (1019)
+.++..+.||...|.+..|...| +.+++++.|.+..+|
T Consensus 234 hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg--------------~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 234 HSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG--------------QQMVTASWDRTANLW 299 (481)
T ss_pred CCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc--------------ceeeeeeccccceee
Confidence 02344566777777777776666 689999999999999
Q ss_pred EccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEEEecCCceEEEEEecCCCeeeeccCCC
Q psy307 421 EVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESG-ECISRFTSRKVAYCVKFHPDEDKQHLDIPVD 499 (1019)
Q Consensus 421 Dl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~-~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~ 499 (1019)
|+ ..+.++..+.||....+.++-+|..+.++++|.|.+.++||++.. ..+..|
T Consensus 300 DV-Etge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VF------------------------- 353 (481)
T KOG0300|consen 300 DV-ETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVF------------------------- 353 (481)
T ss_pred ee-ccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeee-------------------------
Confidence 99 888999999999999999999999999999999999999998732 122233
Q ss_pred ceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeE
Q psy307 500 MKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKC 579 (1019)
Q Consensus 500 ~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I 579 (1019)
..|...++++.|..+. .+++|+.|.+|+|||+++... .+.++... .+++.++.+..+..++.--.+..|
T Consensus 354 -----QGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRs--plATIRtd---S~~NRvavs~g~~iIAiPhDNRqv 422 (481)
T KOG0300|consen 354 -----QGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRS--PLATIRTD---SPANRVAVSKGHPIIAIPHDNRQV 422 (481)
T ss_pred -----cccccceeEEEEecCC-ceeecCCCceEEEeeeccccC--cceeeecC---CccceeEeecCCceEEeccCCceE
Confidence 3344566666666554 578999999999999987532 24444433 668899999999999999888999
Q ss_pred EEEeCCCCceee----eeeccCCCEEEEEEcCCCC-cEEEEEeCCCcEEEE
Q psy307 580 YIWDWKTTKLFK----KWKAHDGVCISTLWHPHEP-SKVVTAGWDAATAKV 625 (1019)
Q Consensus 580 ~IWDl~t~~~l~----~l~~h~~~V~sl~~sp~~~-~~l~s~s~Dg~I~iw 625 (1019)
++||+...++-+ .-++|..-|.|++|..+-+ .-|++||.|..+.-|
T Consensus 423 RlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 423 RLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGW 473 (481)
T ss_pred EEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeee
Confidence 999997654322 3468999999999976432 358999999888555
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.5e-21 Score=213.95 Aligned_cols=243 Identities=23% Similarity=0.350 Sum_probs=199.1
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE-EEEecccCccEeE-EEEcCCCCceeEEEeecCC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC-VRTYYGHRQAVRD-ICFNNTGTNFISAIRWFPK 403 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~-~~~~~gh~~~V~~-i~fspdg~~~vs~i~~~p~ 403 (1019)
+.-+.+.||...|..+++.+ +..++++|.||++++|+-....-. ...+.+|.+.|.. +++.+ .
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e-------------~ 69 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE-------------S 69 (745)
T ss_pred eeEEEeccCccchheeEecC--CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc-------------c
Confidence 56788999999999999876 458999999999999997333222 2456777777666 66554 2
Q ss_pred CCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEE
Q psy307 404 SAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCV 483 (1019)
Q Consensus 404 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v 483 (1019)
+...|++|+.|++|.+|.+ .+..++.++.+|...|.+++...++. ++|||+|.++++|-.. ++..
T Consensus 70 ~~~~l~~g~~D~~i~v~~~-~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~----------- 134 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKL-SQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVY----------- 134 (745)
T ss_pred cCcceEeecccceEEEEec-CCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhhc-----------
Confidence 2357999999999999999 78889999999999999999888887 9999999999999653 2222
Q ss_pred EEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEE
Q psy307 484 KFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDF 563 (1019)
Q Consensus 484 ~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~f 563 (1019)
...+|..+|.++..-|.+ .+++||.|.+|++|.-. ...++|.||. ..|..+++
T Consensus 135 -------------------~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~-----~~l~tf~gHt--D~VRgL~v 187 (745)
T KOG0301|consen 135 -------------------SLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG-----TLLKTFSGHT--DCVRGLAV 187 (745)
T ss_pred -------------------ccCCcchheeeeeecCCC-cEEeccCcceeeeccCC-----chhhhhccch--hheeeeEE
Confidence 234566677777778877 78899999999999763 4468899998 77999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEecc
Q psy307 564 SPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDA 628 (1019)
Q Consensus 564 spdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~ 628 (1019)
-+++. +++++.||.|++|++ +|..+..+.+|..-|.++...+.+ ..++|+|.|+++++|...
T Consensus 188 l~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 188 LDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCC-CeEEEecCCceEEEeecC
Confidence 98865 778999999999998 899999999999999999955554 599999999999887544
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-20 Score=192.01 Aligned_cols=231 Identities=17% Similarity=0.333 Sum_probs=186.7
Q ss_pred CCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCC-CcEEEEeeCCCeEEEEecCCCcEEEE
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKS-AHLLLSCSMDCRVKLWEVYKERRCVR 373 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~-g~lLaSgs~Dg~I~IWdl~~~~~~~~ 373 (1019)
.-+|+++++|+.|.+|++++... .+++..+-.|.+.|+++.|.++. ...|++|+.||.|.+|++ ....++.
T Consensus 50 AVs~~~~aSGssDetI~IYDm~k-------~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~-~~W~~~~ 121 (362)
T KOG0294|consen 50 AVSGPYVASGSSDETIHIYDMRK-------RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV-GSWELLK 121 (362)
T ss_pred EecceeEeccCCCCcEEEEeccc-------hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc-CCeEEee
Confidence 35789999999999999998763 35678889999999999999862 237999999999999999 6779999
Q ss_pred EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE
Q psy307 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS 453 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S 453 (1019)
++++|.+.|++++++|.| ++.++.+.|+.+++||+-++......--.+... .+.|+|.|.+|+.
T Consensus 122 slK~H~~~Vt~lsiHPS~--------------KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at--~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 122 SLKAHKGQVTDLSIHPSG--------------KLALSVGGDQVLRTWNLVRGRVAFVLNLKNKAT--LVSWSPQGDHFVV 185 (362)
T ss_pred eecccccccceeEecCCC--------------ceEEEEcCCceeeeehhhcCccceeeccCCcce--eeEEcCCCCEEEE
Confidence 999999999999999999 789999999999999995544333322233332 2799999999988
Q ss_pred EEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEE
Q psy307 454 AGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKIL 533 (1019)
Q Consensus 454 ~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~ 533 (1019)
++.+ .|-+|.+++......+.....+.|+.|- ++..|++|..|+.|.
T Consensus 186 ~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l--------------------------------~~~~L~vG~d~~~i~ 232 (362)
T KOG0294|consen 186 SGRN-KIDIYQLDNASVFREIENPKRILCATFL--------------------------------DGSELLVGGDNEWIS 232 (362)
T ss_pred Eecc-EEEEEecccHhHhhhhhccccceeeeec--------------------------------CCceEEEecCCceEE
Confidence 8765 5889998877766666555555554442 567899999999999
Q ss_pred EEEccCcccccceeEEeccccccceEEEEE--cCCCCEEEEEeCCCeEEEEeCCCC
Q psy307 534 IFSALNRFKLNRKKTFEGHMVAGYACSLDF--SPDMSYLISGDADGKCYIWDWKTT 587 (1019)
Q Consensus 534 iwd~~~~~~~~~~~~l~gh~~~~~V~~v~f--spdg~~Lasgs~DG~I~IWDl~t~ 587 (1019)
+||..+. .+...+.+|. ..|-++.+ .|++.||+++++||.|+|||+...
T Consensus 233 ~~D~ds~---~~~~~~~AH~--~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 233 LKDTDSD---TPLTEFLAHE--NRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EeccCCC---ccceeeecch--hheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 9999875 4567788888 55777763 567899999999999999999765
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-19 Score=176.50 Aligned_cols=250 Identities=18% Similarity=0.270 Sum_probs=190.8
Q ss_pred ceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecC------CC--------cEEEEEecccCccEeEEEEcCCCC
Q psy307 327 QVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVY------KE--------RRCVRTYYGHRQAVRDICFNNTGT 392 (1019)
Q Consensus 327 ~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~------~~--------~~~~~~~~gh~~~V~~i~fspdg~ 392 (1019)
.+.++. .+..|.+++|+|. |.+.++|+...+.+|.... .. ......-+.|.+.|.|.+|+|+|
T Consensus 25 ~i~~l~-dsqairav~fhp~-g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g- 101 (350)
T KOG0641|consen 25 AINILE-DSQAIRAVAFHPA-GGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG- 101 (350)
T ss_pred EEEEec-chhheeeEEecCC-CceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc-
Confidence 444443 4568999999995 7899999999999997531 10 11223345688999999999999
Q ss_pred ceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC----eEEEEEccccccEeEEEEecC----CCEEEEEE-cCCeEEEE
Q psy307 393 NFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH----RCVRTYYGHRQAVRDICFNNT----GTNFISAG-YDRYLKLW 463 (1019)
Q Consensus 393 ~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~----~~~~~l~~H~~~V~sl~fspd----g~~l~S~s-~Dg~I~lW 463 (1019)
.+|++|+.|.+|++.-+.... ..-..+.-|.+.|..++|..+ |..|++++ .|..|.+-
T Consensus 102 -------------eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~t 168 (350)
T KOG0641|consen 102 -------------ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYIT 168 (350)
T ss_pred -------------CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEe
Confidence 799999999999998774322 123457789999999999754 34567665 47889999
Q ss_pred ECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccc
Q psy307 464 DTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKL 543 (1019)
Q Consensus 464 Dl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~ 543 (1019)
|..+|+..+.+..+.. .|.+ -++-+|-++++|+.|.+|++||++-...+
T Consensus 169 dc~~g~~~~a~sghtg------------------------------hila-lyswn~~m~~sgsqdktirfwdlrv~~~v 217 (350)
T KOG0641|consen 169 DCGRGQGFHALSGHTG------------------------------HILA-LYSWNGAMFASGSQDKTIRFWDLRVNSCV 217 (350)
T ss_pred ecCCCCcceeecCCcc------------------------------cEEE-EEEecCcEEEccCCCceEEEEeeecccee
Confidence 9999888777665421 1111 12447889999999999999999865333
Q ss_pred cceeE-Ee-ccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCc
Q psy307 544 NRKKT-FE-GHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAA 621 (1019)
Q Consensus 544 ~~~~~-l~-gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~ 621 (1019)
+.+.. +. +......|.+++..|.|++|++|-.|....+||++.+++++.+..|...|.++.|+|.. .++++|+.|..
T Consensus 218 ~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a-~yllt~syd~~ 296 (350)
T KOG0641|consen 218 NTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMK 296 (350)
T ss_pred eeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCc-eEEEEecccce
Confidence 22211 11 11123568999999999999999999999999999999999999999999999999966 89999999999
Q ss_pred EEE
Q psy307 622 TAK 624 (1019)
Q Consensus 622 I~i 624 (1019)
|++
T Consensus 297 ikl 299 (350)
T KOG0641|consen 297 IKL 299 (350)
T ss_pred EEE
Confidence 865
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-22 Score=226.46 Aligned_cols=237 Identities=24% Similarity=0.464 Sum_probs=206.6
Q ss_pred eeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEE
Q psy307 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLL 409 (1019)
Q Consensus 330 ~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~ 409 (1019)
.+..|...|.|+.. ...+..+++|+.|..+-+|.+ ....++..+.+|..+|.++.|+++. .+|+
T Consensus 23 ~~~~hsaav~~lk~-~~s~r~~~~Gg~~~k~~L~~i-~kp~~i~S~~~hespIeSl~f~~~E--------------~Lla 86 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKI-RKSSRSLVTGGEDEKVNLWAI-GKPNAITSLTGHESPIESLTFDTSE--------------RLLA 86 (825)
T ss_pred hhhhhhhhhceeee-eccceeeccCCCceeeccccc-cCCchhheeeccCCcceeeecCcch--------------hhhc
Confidence 45578899999988 446889999999999999998 4445566789999999999999987 6899
Q ss_pred EEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCC
Q psy307 410 SCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDE 489 (1019)
Q Consensus 410 sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~ 489 (1019)
+|+.+|+|++||+ ...+.++++.+|...+.++.|+|-+.++++|+.|+.+++||++...|...+.++
T Consensus 87 agsasgtiK~wDl-eeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~------------ 153 (825)
T KOG0267|consen 87 AGSASGTIKVWDL-EEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSH------------ 153 (825)
T ss_pred ccccCCceeeeeh-hhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCC------------
Confidence 9999999999999 677888899999999999999999999999999999999999988887777653
Q ss_pred CeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCE
Q psy307 490 DKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSY 569 (1019)
Q Consensus 490 ~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~ 569 (1019)
...+..+.|+|+|++++.|+.|+.++|||+..+ .....|.+|. +.+..+.|+|..-+
T Consensus 154 ------------------~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---k~~~ef~~~e--~~v~sle~hp~e~L 210 (825)
T KOG0267|consen 154 ------------------TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---KLSKEFKSHE--GKVQSLEFHPLEVL 210 (825)
T ss_pred ------------------cceeEEEeecCCCceeeccCCcceeeeeccccc---cccccccccc--ccccccccCchhhh
Confidence 244566788999999999999999999999877 4457888887 67889999999999
Q ss_pred EEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCC
Q psy307 570 LISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619 (1019)
Q Consensus 570 Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~D 619 (1019)
+++|+.|+++++||+++...+...+.....|.+..|+|++ ..+.+|..+
T Consensus 211 la~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~-~~~~~G~q~ 259 (825)
T KOG0267|consen 211 LAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDG-KIVLSGEQI 259 (825)
T ss_pred hccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCc-eeeecCchh
Confidence 9999999999999999999999888888899999999998 455555443
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-21 Score=202.55 Aligned_cols=262 Identities=13% Similarity=0.206 Sum_probs=206.6
Q ss_pred CeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEeccc
Q psy307 299 RSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGH 378 (1019)
Q Consensus 299 r~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh 378 (1019)
..+++|+.||.|++|+... ..++.+++.|.+.|..|++.. ..++++|.|.+|+.|.+.. .+++++.+.
T Consensus 80 s~~aSGs~DG~VkiWnlsq-------R~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~--~p~~tilg~ 147 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQ-------RECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDG--PPLHTILGK 147 (433)
T ss_pred hhhhccccCceEEEEehhh-------hhhhheeecccCceeeEEecc---cceEEecCCcceeeeeccC--Ccceeeecc
Confidence 5688999999999998762 356889999999999999976 5799999999999999844 356666553
Q ss_pred CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCE-EEEEEcC
Q psy307 379 RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTN-FISAGYD 457 (1019)
Q Consensus 379 ~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~-l~S~s~D 457 (1019)
..+..|.-+..+ ..++||+. .|.|||. ....+++.+.--...|.++.|+|.... |++|+.|
T Consensus 148 -s~~~gIdh~~~~--------------~~FaTcGe--~i~IWD~-~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 148 -SVYLGIDHHRKN--------------SVFATCGE--QIDIWDE-QRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred -cccccccccccc--------------ccccccCc--eeeeccc-ccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 334444433322 35556554 5899999 556677888878888999999997664 6777799
Q ss_pred CeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEc
Q psy307 458 RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSA 537 (1019)
Q Consensus 458 g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~ 537 (1019)
+.|.|+|++++.++..+...... +.++|+|.+-.+++++.|..++.||+
T Consensus 210 rsIvLyD~R~~~Pl~KVi~~mRT-------------------------------N~IswnPeafnF~~a~ED~nlY~~Dm 258 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVILTMRT-------------------------------NTICWNPEAFNFVAANEDHNLYTYDM 258 (433)
T ss_pred CceEEEecccCCccceeeeeccc-------------------------------cceecCccccceeeccccccceehhh
Confidence 99999999999988766544333 34666776778899999999999999
Q ss_pred cCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec-cCCCEEEEEEcCCCCcEEEEE
Q psy307 538 LNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA-HDGVCISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 538 ~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~-h~~~V~sl~~sp~~~~~l~s~ 616 (1019)
+.-. ..+..+.+|. ..|.++.|||.|+-+++||.|.+|+||.+..+..-..+.. .-..|.|+.|+-|. .++++|
T Consensus 259 R~l~--~p~~v~~dhv--sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Ds-kyi~SG 333 (433)
T KOG0268|consen 259 RNLS--RPLNVHKDHV--SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDS-KYIISG 333 (433)
T ss_pred hhhc--ccchhhcccc--eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccc-cEEEec
Confidence 8653 3467778887 6699999999999999999999999999987755433311 12468999999988 799999
Q ss_pred eCCCcEEEEe
Q psy307 617 GWDAATAKVQ 626 (1019)
Q Consensus 617 s~Dg~I~iww 626 (1019)
|.|+.|++|-
T Consensus 334 Sdd~nvRlWk 343 (433)
T KOG0268|consen 334 SDDGNVRLWK 343 (433)
T ss_pred CCCcceeeee
Confidence 9999998873
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-20 Score=202.77 Aligned_cols=242 Identities=18% Similarity=0.273 Sum_probs=187.7
Q ss_pred CeeeeCCCCCceeeecCCCCCCccC---CccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcE-----
Q psy307 299 RSFLHPPHDVGTNLRSDTPPDRCFL---PKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERR----- 370 (1019)
Q Consensus 299 r~~~~~~~D~~v~lw~~~~~~~~~l---p~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~----- 370 (1019)
..+++....+.+.+|+......... ...+-.+|.||++.=++++|++...-.|++|+.|++|.+||+.....
T Consensus 138 ~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~ 217 (422)
T KOG0264|consen 138 NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVV 217 (422)
T ss_pred cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccc
Confidence 3455666778899998754322111 22455689999998899999998788999999999999999964332
Q ss_pred -EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccC-CCeEEEEEccccccEeEEEEecCC
Q psy307 371 -CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-EHRCVRTYYGHRQAVRDICFNNTG 448 (1019)
Q Consensus 371 -~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~-~~~~~~~l~~H~~~V~sl~fspdg 448 (1019)
....+.+|...|.+++|++-.. .++++++.|+.+.|||++. ..++.....+|.+.|+|++|+|-+
T Consensus 218 ~p~~~~~~h~~~VeDV~~h~~h~-------------~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~ 284 (422)
T KOG0264|consen 218 DPKTIFSGHEDVVEDVAWHPLHE-------------DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN 284 (422)
T ss_pred cceEEeecCCcceehhhccccch-------------hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC
Confidence 3456889999999888877654 7899999999999999976 667778889999999999999965
Q ss_pred C-EEEEEEcCCeEEEEECCCC-ceEEEEecC-CceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEE
Q psy307 449 T-NFISAGYDRYLKLWDTESG-ECISRFTSR-KVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLAC 525 (1019)
Q Consensus 449 ~-~l~S~s~Dg~I~lWDl~t~-~~i~~~~~~-~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Las 525 (1019)
. .||+||.|++|++||++.- +++.++..+ ..+.++.|+|. ....||+
T Consensus 285 ~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh------------------------------~etvLAS 334 (422)
T KOG0264|consen 285 EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPH------------------------------NETVLAS 334 (422)
T ss_pred CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCC------------------------------CCceeEe
Confidence 5 5889999999999999875 345555543 34455555544 2467899
Q ss_pred EecCCeEEEEEccCcc-----------cccceeEEeccccccceEEEEEcCCCCE-EEEEeCCCeEEEEeCC
Q psy307 526 QSMDNKILIFSALNRF-----------KLNRKKTFEGHMVAGYACSLDFSPDMSY-LISGDADGKCYIWDWK 585 (1019)
Q Consensus 526 gs~Dg~I~iwd~~~~~-----------~~~~~~~l~gh~~~~~V~~v~fspdg~~-Lasgs~DG~I~IWDl~ 585 (1019)
++.|+.+.|||+..-. +...+....||+ ..|+.+.|+|+..+ |+|.+.|+.+.||.+.
T Consensus 335 Sg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~--~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 335 SGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHT--AKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cccCCcEEEEeccccccccChhhhccCCcceeEEecCcc--cccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9999999999996421 223356677888 67999999998775 6788899999999875
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=186.41 Aligned_cols=300 Identities=15% Similarity=0.218 Sum_probs=218.9
Q ss_pred CCCCCeeeeCCCCCceeeecCCCCC---CccCCccce-----eeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecC
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPPD---RCFLPKTQV-----HTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVY 366 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~~---~~~lp~~~i-----~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~ 366 (1019)
...||++++|+.|+.+.+|+..... ...+.-+.. ..-.+|.-+|..+.|.|-+.-++.++|.|.+++|||.+
T Consensus 53 ~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtn 132 (397)
T KOG4283|consen 53 LTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTN 132 (397)
T ss_pred cccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecc
Confidence 4579999999999999999987543 112221211 23357899999999999888899999999999999994
Q ss_pred CCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec
Q psy307 367 KERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN 446 (1019)
Q Consensus 367 ~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp 446 (1019)
+ .+....+. -.+.|.+-+++|-.. ...++++|..|-.|++.|+ ..+.+.+++.||.+.|.++.|+|
T Consensus 133 T-lQ~a~~F~-me~~VYshamSp~a~-----------sHcLiA~gtr~~~VrLCDi-~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 133 T-LQEAVDFK-MEGKVYSHAMSPMAM-----------SHCLIAAGTRDVQVRLCDI-ASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred c-ceeeEEee-cCceeehhhcChhhh-----------cceEEEEecCCCcEEEEec-cCCcceeeeccccCceEEEEecc
Confidence 4 33333333 234566666665431 1247888889999999999 88899999999999999999999
Q ss_pred CCCE-EEEEEcCCeEEEEECCCC-ceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEE
Q psy307 447 TGTN-FISAGYDRYLKLWDTESG-ECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLA 524 (1019)
Q Consensus 447 dg~~-l~S~s~Dg~I~lWDl~t~-~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~La 524 (1019)
...+ |++||.||.|++||++.- .|...+..+.... . ........+.+.+..++|+.+|.+++
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~----~------------p~~~~n~ah~gkvngla~tSd~~~l~ 262 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKR----P------------PILKTNTAHYGKVNGLAWTSDARYLA 262 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCcc----C------------ccccccccccceeeeeeecccchhhh
Confidence 9887 779999999999999865 5666665443110 0 01112345667899999999999999
Q ss_pred EEecCCeEEEEEccCcccccceeEEeccc-cccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEE
Q psy307 525 CQSMDNKILIFSALNRFKLNRKKTFEGHM-VAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCIST 603 (1019)
Q Consensus 525 sgs~Dg~I~iwd~~~~~~~~~~~~l~gh~-~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl 603 (1019)
+++.|..+++|+..++.....-..-..|. ..+....+. +-+...++---.++.+.++++-++..+..+..|-..|.+.
T Consensus 263 ~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~ 341 (397)
T KOG4283|consen 263 SCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCA 341 (397)
T ss_pred hccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEE
Confidence 99999999999988764321110001111 001111123 3344445444566899999999999999999998889999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEe
Q psy307 604 LWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 604 ~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
.+-|+- ....++..|+.|..|-
T Consensus 342 ~~~~~f-q~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 342 AYRPDF-EQCFTGDMNGNIYMWS 363 (397)
T ss_pred eecCch-hhhhccccCCcccccc
Confidence 999986 5789999999998773
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=187.19 Aligned_cols=260 Identities=20% Similarity=0.339 Sum_probs=193.0
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC---CcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEE
Q psy307 332 EGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK---ERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 332 ~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~---~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L 408 (1019)
.+|.+-|+|+.|.+ .|+.+|+|+.|++|+|||... +..+....+.|.+.|..+.|.+ |.-++.+
T Consensus 10 s~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAh------------PEfGqvv 76 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAH------------PEFGQVV 76 (361)
T ss_pred cCCcceeeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecC------------ccccceE
Confidence 58999999999999 599999999999999999632 3466777889999999998875 3345899
Q ss_pred EEEeCCCcEEEEEccCC--------CeEEEEEccccccEeEEEEecC--CCEEEEEEcCCeEEEEECCCCceEEEEecCC
Q psy307 409 LSCSMDCRVKLWEVYKE--------HRCVRTYYGHRQAVRDICFNNT--GTNFISAGYDRYLKLWDTESGECISRFTSRK 478 (1019)
Q Consensus 409 ~sgs~Dg~I~IWDl~~~--------~~~~~~l~~H~~~V~sl~fspd--g~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~ 478 (1019)
+++|.|+++.||.-... -....++....+.|++|+|.|. |-.+++++.||+||||+.-.---+.......
T Consensus 77 A~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~ 156 (361)
T KOG2445|consen 77 ATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH 156 (361)
T ss_pred EEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhh
Confidence 99999999999985211 1234566778899999999995 5679999999999999875543333322111
Q ss_pred ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC---CCEEEEEecC-----CeEEEEEccCcc-cccceeEE
Q psy307 479 VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN---NKWLACQSMD-----NKILIFSALNRF-KLNRKKTF 549 (1019)
Q Consensus 479 ~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd---g~~Lasgs~D-----g~I~iwd~~~~~-~~~~~~~l 549 (1019)
.+..+.- |- ..+.....|+.|+|. ..+||.|+.+ +.+.||...... +...+..+
T Consensus 157 Ei~~~~~-pp----------------~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L 219 (361)
T KOG2445|consen 157 EIQNVID-PP----------------GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL 219 (361)
T ss_pred hhhhccC-Cc----------------ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc
Confidence 1110000 00 001122334555543 4678888866 588999876543 55667778
Q ss_pred eccccccceEEEEEcCCC----CEEEEEeCCCeEEEEeCCCC--------------------ceeeeeeccCCCEEEEEE
Q psy307 550 EGHMVAGYACSLDFSPDM----SYLISGDADGKCYIWDWKTT--------------------KLFKKWKAHDGVCISTLW 605 (1019)
Q Consensus 550 ~gh~~~~~V~~v~fspdg----~~Lasgs~DG~I~IWDl~t~--------------------~~l~~l~~h~~~V~sl~~ 605 (1019)
.+|. .+|..++|.|+- ..||+++.|| |+||.++.. +.+..+..|.+.|+.+.|
T Consensus 220 ~d~~--dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w 296 (361)
T KOG2445|consen 220 PDHT--DPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW 296 (361)
T ss_pred CCCC--CcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE
Confidence 8887 889999999963 3799999999 999998731 235556789999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEE
Q psy307 606 HPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 606 sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+-.| ..|++.|.||++++|
T Consensus 297 NmtG-tiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 297 NMTG-TILSSTGDDGCVRLW 315 (361)
T ss_pred eeee-eEEeecCCCceeeeh
Confidence 9988 699999999999876
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=203.94 Aligned_cols=272 Identities=15% Similarity=0.261 Sum_probs=214.3
Q ss_pred CCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE-E
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV-R 373 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~-~ 373 (1019)
+...|...+++ .+.|++|+...+. ...|..++-.++ ...-|.++.++|| |+.|++|+.-.++.|||+.....-+ .
T Consensus 428 S~~trhVyTgG-kgcVKVWdis~pg-~k~PvsqLdcl~-rdnyiRSckL~pd-grtLivGGeastlsiWDLAapTprika 503 (705)
T KOG0639|consen 428 SNPTRHVYTGG-KGCVKVWDISQPG-NKSPVSQLDCLN-RDNYIRSCKLLPD-GRTLIVGGEASTLSIWDLAAPTPRIKA 503 (705)
T ss_pred cCCcceeEecC-CCeEEEeeccCCC-CCCccccccccC-cccceeeeEecCC-CceEEeccccceeeeeeccCCCcchhh
Confidence 34456666775 4789999988663 233433333332 3457889999996 7889999999999999996433222 2
Q ss_pred EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE
Q psy307 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS 453 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S 453 (1019)
.+.........++.+||. ++.++++.||.|.|||+ .....++.+.||...+.||.+++||..|.+
T Consensus 504 eltssapaCyALa~spDa--------------kvcFsccsdGnI~vwDL-hnq~~VrqfqGhtDGascIdis~dGtklWT 568 (705)
T KOG0639|consen 504 ELTSSAPACYALAISPDA--------------KVCFSCCSDGNIAVWDL-HNQTLVRQFQGHTDGASCIDISKDGTKLWT 568 (705)
T ss_pred hcCCcchhhhhhhcCCcc--------------ceeeeeccCCcEEEEEc-ccceeeecccCCCCCceeEEecCCCceeec
Confidence 344444567788889888 78999999999999999 788899999999999999999999999999
Q ss_pred EEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEE
Q psy307 454 AGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKIL 533 (1019)
Q Consensus 454 ~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~ 533 (1019)
|+-|.+||-||++.++.+........ |-++..+|++.|+++|..++.+.
T Consensus 569 GGlDntvRcWDlregrqlqqhdF~SQ-------------------------------IfSLg~cP~~dWlavGMens~ve 617 (705)
T KOG0639|consen 569 GGLDNTVRCWDLREGRQLQQHDFSSQ-------------------------------IFSLGYCPTGDWLAVGMENSNVE 617 (705)
T ss_pred CCCccceeehhhhhhhhhhhhhhhhh-------------------------------heecccCCCccceeeecccCcEE
Confidence 99999999999999987665554443 34455577889999999999999
Q ss_pred EEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEE
Q psy307 534 IFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKV 613 (1019)
Q Consensus 534 iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l 613 (1019)
|....... ...+.-| ...|.++.|.+.|+++++.+.|..+..|...-|..+...+. ...|.++..+.++ ++|
T Consensus 618 vlh~skp~----kyqlhlh--eScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~dd-kyI 689 (705)
T KOG0639|consen 618 VLHTSKPE----KYQLHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDD-KYI 689 (705)
T ss_pred EEecCCcc----ceeeccc--ccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCc-eEE
Confidence 98876542 2233334 47799999999999999999999999999988887776654 4579999999988 799
Q ss_pred EEEeCCCcEEE
Q psy307 614 VTAGWDAATAK 624 (1019)
Q Consensus 614 ~s~s~Dg~I~i 624 (1019)
+||+.|....+
T Consensus 690 VTGSGdkkATV 700 (705)
T KOG0639|consen 690 VTGSGDKKATV 700 (705)
T ss_pred EecCCCcceEE
Confidence 99999976533
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-20 Score=188.39 Aligned_cols=303 Identities=17% Similarity=0.234 Sum_probs=211.5
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEE--EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEE
Q psy307 332 EGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVR--TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLL 409 (1019)
Q Consensus 332 ~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~--~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~ 409 (1019)
+-|.+.|+++...+..|+++++|+.||.|.+||+........ .+..|. |+ .
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~----c~-v---------------------- 92 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHK----CI-V---------------------- 92 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehee----ee-c----------------------
Confidence 458899999999998899999999999999999954221000 000010 00 0
Q ss_pred EEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec-CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecC
Q psy307 410 SCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN-TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPD 488 (1019)
Q Consensus 410 sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp-dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~ 488 (1019)
....-.+|.-.|.++.|-| |..+|.++|.|.+++|||+++-+....|..+..+++-+++|-
T Consensus 93 ------------------~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~ 154 (397)
T KOG4283|consen 93 ------------------AKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPM 154 (397)
T ss_pred ------------------cccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChh
Confidence 0112246788888888888 455788999999999999999999999988888877766654
Q ss_pred CCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCC
Q psy307 489 EDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMS 568 (1019)
Q Consensus 489 ~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~ 568 (1019)
.. ...++|+|..|-+|++.|+..+ ....++.||. +.|.++.|+|...
T Consensus 155 a~----------------------------sHcLiA~gtr~~~VrLCDi~SG---s~sH~LsGHr--~~vlaV~Wsp~~e 201 (397)
T KOG4283|consen 155 AM----------------------------SHCLIAAGTRDVQVRLCDIASG---SFSHTLSGHR--DGVLAVEWSPSSE 201 (397)
T ss_pred hh----------------------------cceEEEEecCCCcEEEEeccCC---cceeeecccc--CceEEEEeccCce
Confidence 21 2357899999999999999988 5568899998 6699999999887
Q ss_pred E-EEEEeCCCeEEEEeCCCC-ce--------------eeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceee
Q psy307 569 Y-LISGDADGKCYIWDWKTT-KL--------------FKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVK 632 (1019)
Q Consensus 569 ~-Lasgs~DG~I~IWDl~t~-~~--------------l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~k 632 (1019)
+ |++|+.||.|++||++.. -+ +++-.+|.+.|++++|..++ .++++++.|..++.|...+-..
T Consensus 202 ~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 202 WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc-hhhhhccCccceEEeecccCcc
Confidence 6 689999999999999743 11 22234688899999999998 6999999999998875443322
Q ss_pred eeeeccccCCceeecccccccchhhhhhhcc--cccC-CCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccH
Q psy307 633 IAVEMEKQVPQLYQFNQTLTLSSIIQEICSG--WSLS-DSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTA 709 (1019)
Q Consensus 633 i~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~--wsls-~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a 709 (1019)
.+.+...... +++..+.-..+..|.. ..++ ++..+++..-++.....+. +|-..|+|.++.|+-
T Consensus 281 tl~~~g~~~~-----n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~------~h~k~i~c~~~~~~f-- 347 (397)
T KOG4283|consen 281 TLREFGPIIH-----NQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLS------THLKRINCAAYRPDF-- 347 (397)
T ss_pred cccccccccc-----cccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeee------cccceeeEEeecCch--
Confidence 2222221110 1111111111111211 1122 3333444444444444444 566679999999998
Q ss_pred HHHHhhcCCCchhhHHH
Q psy307 710 DDILSKLSDKNASLEEK 726 (1019)
Q Consensus 710 ~~Ilt~~~d~~i~lw~~ 726 (1019)
+...++.-|++|-.|-.
T Consensus 348 q~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 348 EQCFTGDMNGNIYMWSP 364 (397)
T ss_pred hhhhccccCCccccccc
Confidence 89999999999988874
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.5e-21 Score=217.66 Aligned_cols=240 Identities=20% Similarity=0.453 Sum_probs=191.8
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCC--CcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYK--ERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD 414 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~--~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D 414 (1019)
.+..|.|..-..++|||++..|.|.+||+.. ..+.+..+..|...|+++.|++..+ ++|++||.|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep-------------~iliSGSQD 155 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEP-------------NILISGSQD 155 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCc-------------cEEEecCCC
Confidence 4556788766788999999999999999965 3455667889999999998887664 899999999
Q ss_pred CcEEEEEccCCCeEEEEEccccccEeEEEEecC-CCEEEEEEcCCeEEEEECCCCc-eEEEEecCCceEEEEEecCCCee
Q psy307 415 CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT-GTNFISAGYDRYLKLWDTESGE-CISRFTSRKVAYCVKFHPDEDKQ 492 (1019)
Q Consensus 415 g~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspd-g~~l~S~s~Dg~I~lWDl~t~~-~i~~~~~~~~v~~v~~~p~~~~~ 492 (1019)
|+|++||+ .......++.+....|..+.|+|. +.+|+++...|.+++||++... +...+
T Consensus 156 g~vK~~Dl-R~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~------------------ 216 (839)
T KOG0269|consen 156 GTVKCWDL-RSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKL------------------ 216 (839)
T ss_pred ceEEEEee-ecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHh------------------
Confidence 99999999 555566777778899999999994 6679999999999999998543 22222
Q ss_pred eeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCE-EE
Q psy307 493 HLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSY-LI 571 (1019)
Q Consensus 493 ~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~-La 571 (1019)
..|.+.+.++.|+|++.+||+|+.|++|+|||..+... ..+.++.. ..+|.++.|-|..++ |+
T Consensus 217 ------------~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tInT---iapv~rVkWRP~~~~hLA 280 (839)
T KOG0269|consen 217 ------------TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTINT---IAPVGRVKWRPARSYHLA 280 (839)
T ss_pred ------------hcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEee---cceeeeeeeccCccchhh
Confidence 34556777888888899999999999999999986422 22333322 267999999998765 56
Q ss_pred EEe--CCCeEEEEeCCCC-ceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEE
Q psy307 572 SGD--ADGKCYIWDWKTT-KLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAK 624 (1019)
Q Consensus 572 sgs--~DG~I~IWDl~t~-~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~i 624 (1019)
+++ .|-.|+|||++.. -+..++..|...++.++|-......+.+++.||++..
T Consensus 281 tcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 281 TCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred hhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 555 3668999999865 4577889999999999998866678999999998843
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-19 Score=208.75 Aligned_cols=265 Identities=16% Similarity=0.237 Sum_probs=208.4
Q ss_pred CCCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE
Q psy307 292 DPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC 371 (1019)
Q Consensus 292 ~~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~ 371 (1019)
-.++++|..+.+.+.|+.|+.|+...... .| .++.-|...|.+++.. +..|++|+.+++|.++.+.. +..
T Consensus 19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e--~P----~ti~~~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fps-~~~ 88 (933)
T KOG1274|consen 19 ICYDPDGEFICTCGSDGDIRKWKTNSDEE--EP----ETIDISGELVSSIACY---SNHFLTGSEQNTVLRYKFPS-GEE 88 (933)
T ss_pred EEEcCCCCEEEEecCCCceEEeecCCccc--CC----chhhccCceeEEEeec---ccceEEeeccceEEEeeCCC-CCc
Confidence 35788999999999999999998764421 12 1233377888888864 44899999999999999843 333
Q ss_pred EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEE
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNF 451 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l 451 (1019)
-..+...+-++++++|+.+| ++++.||.|-.|++-++ ........+.+|.++|.++.|+|.+..|
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g--------------~~iaagsdD~~vK~~~~-~D~s~~~~lrgh~apVl~l~~~p~~~fL 153 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSG--------------KMIAAGSDDTAVKLLNL-DDSSQEKVLRGHDAPVLQLSYDPKGNFL 153 (933)
T ss_pred cceeeeeeccceEEEEecCC--------------cEEEeecCceeEEEEec-cccchheeecccCCceeeeeEcCCCCEE
Confidence 33445566789999999999 79999999999999999 6677788999999999999999999999
Q ss_pred EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCe
Q psy307 452 ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNK 531 (1019)
Q Consensus 452 ~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~ 531 (1019)
++.+.||.|++||+.++.+..++..-..... ......+..++|+|+|..++..+.|+.
T Consensus 154 Avss~dG~v~iw~~~~~~~~~tl~~v~k~n~----------------------~~~s~i~~~~aW~Pk~g~la~~~~d~~ 211 (933)
T KOG1274|consen 154 AVSSCDGKVQIWDLQDGILSKTLTGVDKDNE----------------------FILSRICTRLAWHPKGGTLAVPPVDNT 211 (933)
T ss_pred EEEecCceEEEEEcccchhhhhcccCCcccc----------------------ccccceeeeeeecCCCCeEEeeccCCe
Confidence 9999999999999999988776654211110 001344567899999888888899999
Q ss_pred EEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCC
Q psy307 532 ILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEP 610 (1019)
Q Consensus 532 I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~ 610 (1019)
|++|+..+.. ....+........++.++|+|+|+|||+++.||.|.|||+++-.. ......|.+++|.|+.+
T Consensus 212 Vkvy~r~~we---~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 212 VKVYSRKGWE---LQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNAN 283 (933)
T ss_pred EEEEccCCce---eheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCC
Confidence 9999988763 334555444445589999999999999999999999999998221 12235799999999985
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-18 Score=189.18 Aligned_cols=273 Identities=11% Similarity=0.084 Sum_probs=189.4
Q ss_pred CCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecc
Q psy307 298 GRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG 377 (1019)
Q Consensus 298 gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g 377 (1019)
++.+++...|+.+.+|+... .+.+..+.+|. .+.+++|+|++..++++++.++.|++||+. .++....+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t-------~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~~~ 71 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTAT-------LEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLA-TGEVIGTLPS 71 (300)
T ss_pred CcEEEEecCCCEEEEEECCC-------CceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECC-CCcEEEeccC
Confidence 35678888999999998653 24566777665 477899999754455778889999999984 4455555554
Q ss_pred cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcC
Q psy307 378 HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD 457 (1019)
Q Consensus 378 h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~D 457 (1019)
+.. +..++|+|++. .++++++.|+.|++||+. ....+..+.. ...+.+++|+|+|..+++++.+
T Consensus 72 ~~~-~~~~~~~~~g~-------------~l~~~~~~~~~l~~~d~~-~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~ 135 (300)
T TIGR03866 72 GPD-PELFALHPNGK-------------ILYIANEDDNLVTVIDIE-TRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSET 135 (300)
T ss_pred CCC-ccEEEECCCCC-------------EEEEEcCCCCeEEEEECC-CCeEEeEeeC-CCCcceEEECCCCCEEEEEecC
Confidence 433 45677777773 344556678999999994 4455555542 2346789999999999988877
Q ss_pred C-eEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE-ecCCeEEEE
Q psy307 458 R-YLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ-SMDNKILIF 535 (1019)
Q Consensus 458 g-~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg-s~Dg~I~iw 535 (1019)
+ .+.+||.++++........ .....++|+|+|++|+++ ..++.|.+|
T Consensus 136 ~~~~~~~d~~~~~~~~~~~~~-------------------------------~~~~~~~~s~dg~~l~~~~~~~~~v~i~ 184 (300)
T TIGR03866 136 TNMAHFIDTKTYEIVDNVLVD-------------------------------QRPRFAEFTADGKELWVSSEIGGTVSVI 184 (300)
T ss_pred CCeEEEEeCCCCeEEEEEEcC-------------------------------CCccEEEECCCCCEEEEEcCCCCEEEEE
Confidence 5 5677898877665433211 123457788899888655 468999999
Q ss_pred EccCcccccceeEEecc-----ccccceEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCC
Q psy307 536 SALNRFKLNRKKTFEGH-----MVAGYACSLDFSPDMSYLIS-GDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609 (1019)
Q Consensus 536 d~~~~~~~~~~~~l~gh-----~~~~~V~~v~fspdg~~Las-gs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~ 609 (1019)
|+.++... ..+..+ ........++|+|+|+++++ .+.++.|.+||+.+++.+..+. +...+.+++|+|++
T Consensus 185 d~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g 260 (300)
T TIGR03866 185 DVATRKVI---KKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDE 260 (300)
T ss_pred EcCcceee---eeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCC
Confidence 99876332 222211 11123456889999998654 4456789999999988876654 34578999999999
Q ss_pred CcEEEEE-eCCCcEEEEeccceee
Q psy307 610 PSKVVTA-GWDAATAKVQDANIVK 632 (1019)
Q Consensus 610 ~~~l~s~-s~Dg~I~iwwd~~i~k 632 (1019)
. .|+++ +.+|.|.+ ||....+
T Consensus 261 ~-~l~~~~~~~~~i~v-~d~~~~~ 282 (300)
T TIGR03866 261 K-YLLTTNGVSNDVSV-IDVAALK 282 (300)
T ss_pred C-EEEEEcCCCCeEEE-EECCCCc
Confidence 5 55554 66888855 5555444
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=191.89 Aligned_cols=249 Identities=22% Similarity=0.309 Sum_probs=185.0
Q ss_pred cCCCCeEEEEEcCC-CCcEEEEeeCCCeEEEEecCC---------------CcEEEEEecccCccEeEEEEcCCCCceeE
Q psy307 333 GHTKGISAIRWFPK-SAHLLLSCSMDCRVKLWEVYK---------------ERRCVRTYYGHRQAVRDICFNNTGTNFIS 396 (1019)
Q Consensus 333 gH~~~V~~i~fspd-~g~lLaSgs~Dg~I~IWdl~~---------------~~~~~~~~~gh~~~V~~i~fspdg~~~vs 396 (1019)
+|.+.|+.++-++- ...+.++-+..|.|.||++.. ..+++.++.+|...=..|+|||
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp------- 221 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSP------- 221 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccc-------
Confidence 46666777766664 356777778899999999832 1234555666665555555555
Q ss_pred EEeecCCCCcEEEEEeCCCcEEEEEccCCCeEE--EEEccccccEeEEEEecCCC-EEEEEEcCCeEEEEECCCCceEEE
Q psy307 397 AIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCV--RTYYGHRQAVRDICFNNTGT-NFISAGYDRYLKLWDTESGECISR 473 (1019)
Q Consensus 397 ~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~--~~l~~H~~~V~sl~fspdg~-~l~S~s~Dg~I~lWDl~t~~~i~~ 473 (1019)
.....|++|..-+.|++|...++...+ ..+.+|+..|-.++|||..+ .|+|||.||+|+|||++.+.....
T Consensus 222 ------~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 222 ------IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred ------ccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccce
Confidence 444679999999999999996654333 45678999999999999654 699999999999999998732211
Q ss_pred EecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccc
Q psy307 474 FTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHM 553 (1019)
Q Consensus 474 ~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~ 553 (1019)
+. ...|...|+.+.|+....+||+|+.||+++|||++.-..-..+..|+.|.
T Consensus 296 ~~----------------------------~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk 347 (440)
T KOG0302|consen 296 VS----------------------------TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK 347 (440)
T ss_pred eE----------------------------eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEecc
Confidence 11 12344567777888888899999999999999999766557788999998
Q ss_pred cccceEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCce----------------eeeeeccC--CCEEEEEEcCCCCcEEE
Q psy307 554 VAGYACSLDFSPD-MSYLISGDADGKCYIWDWKTTKL----------------FKKWKAHD--GVCISTLWHPHEPSKVV 614 (1019)
Q Consensus 554 ~~~~V~~v~fspd-g~~Lasgs~DG~I~IWDl~t~~~----------------l~~l~~h~--~~V~sl~~sp~~~~~l~ 614 (1019)
.+|++|.|+|. ...|++++.|..|.|||+....- .+-+-.|. ..+-.+.||++-+.+++
T Consensus 348 --~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lv 425 (440)
T KOG0302|consen 348 --APITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLV 425 (440)
T ss_pred --CCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEE
Confidence 88999999994 55788888999999999853211 11122343 36788999999999999
Q ss_pred EEeCCCcEEEE
Q psy307 615 TAGWDAATAKV 625 (1019)
Q Consensus 615 s~s~Dg~I~iw 625 (1019)
+.+.||-- +|
T Consensus 426 sTa~dGfn-Vf 435 (440)
T KOG0302|consen 426 STAIDGFN-VF 435 (440)
T ss_pred Eeccccee-EE
Confidence 99999854 44
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-18 Score=180.36 Aligned_cols=261 Identities=19% Similarity=0.303 Sum_probs=200.8
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeC--CCeEEEEecCCCcE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSM--DCRVKLWEVYKERR 370 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~--Dg~I~IWdl~~~~~ 370 (1019)
.++.+|..+++.++|..++|++.. ..++++++..++-+|..++|.... ..++.++. |.+|+.-++ .+.+
T Consensus 21 ~fs~~G~~litss~dDsl~LYd~~-------~g~~~~ti~skkyG~~~~~Fth~~-~~~i~sStk~d~tIryLsl-~dNk 91 (311)
T KOG1446|consen 21 DFSDDGLLLITSSEDDSLRLYDSL-------SGKQVKTINSKKYGVDLACFTHHS-NTVIHSSTKEDDTIRYLSL-HDNK 91 (311)
T ss_pred EecCCCCEEEEecCCCeEEEEEcC-------CCceeeEeecccccccEEEEecCC-ceEEEccCCCCCceEEEEe-ecCc
Confidence 467899999999999999999876 346788999999999999998764 44444444 899999999 6668
Q ss_pred EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCE
Q psy307 371 CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTN 450 (1019)
Q Consensus 371 ~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~ 450 (1019)
.++.+.||...|++|+.+|-+ ..+++++.|++|++||++ ..++...+.....+ .++|.|.|-.
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~--------------d~FlS~S~D~tvrLWDlR-~~~cqg~l~~~~~p--i~AfDp~GLi 154 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKD--------------DTFLSSSLDKTVRLWDLR-VKKCQGLLNLSGRP--IAAFDPEGLI 154 (311)
T ss_pred eEEEcCCCCceEEEEEecCCC--------------CeEEecccCCeEEeeEec-CCCCceEEecCCCc--ceeECCCCcE
Confidence 899999999999999999988 689999999999999995 34444443332222 3499999999
Q ss_pred EEEEEcCCeEEEEECCCC--ceEEEEec----CCceEEEEEecCCCeeeeccCCCceeeeCCCC-------------Ccc
Q psy307 451 FISAGYDRYLKLWDTESG--ECISRFTS----RKVAYCVKFHPDEDKQHLDIPVDMKYIADPTM-------------HSM 511 (1019)
Q Consensus 451 l~S~s~Dg~I~lWDl~t~--~~i~~~~~----~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~-------------~~i 511 (1019)
||++.....|++||++.- .+..++.. ......+.|+|+|....+.......++.+.-. ..+
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~ 234 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL 234 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc
Confidence 999988889999999864 34445543 35567899999999888755554444333221 112
Q ss_pred -cEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy307 512 -PAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWK 585 (1019)
Q Consensus 512 -~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~ 585 (1019)
...+++|+++++++|+.||+|.+|++.++.+ +..+.+. ..+.+.++.|.|.-..++++ +..+.+|=..
T Consensus 235 ~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~---v~~~~~~-~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 235 PLSATFTPDSKFVLSGSDDGTIHVWNLETGKK---VAVLRGP-NGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred ceeEEECCCCcEEEEecCCCcEEEEEcCCCcE---eeEecCC-CCCCccccccCCceeeeeec--CceEEEEecc
Confidence 3678999999999999999999999998844 4556663 23778999999987666655 4568888544
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-19 Score=195.90 Aligned_cols=235 Identities=18% Similarity=0.295 Sum_probs=188.4
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
+.+++|+++++++.|..|.+|+... ..++++|+||.+.|.+++|-. +.+-|+++|.|++|++|++ .....+
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t-------~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~-~~~s~v 279 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDT-------LEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSI-DQLSYV 279 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcc-------cchhhcccccccceeeeeeec-CccceeeeecCCceEEEeh-hHhHHH
Confidence 4578999999999999999997763 456888999999999999987 5788999999999999999 555667
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
.++.||...|..|....-+ ..+-+|+.|+++++|++ .......+.+|.+.+-|++|-.+ ..|+
T Consensus 280 etlyGHqd~v~~IdaL~re--------------R~vtVGgrDrT~rlwKi--~eesqlifrg~~~sidcv~~In~-~Hfv 342 (479)
T KOG0299|consen 280 ETLYGHQDGVLGIDALSRE--------------RCVTVGGRDRTVRLWKI--PEESQLIFRGGEGSIDCVAFIND-EHFV 342 (479)
T ss_pred HHHhCCccceeeechhccc--------------ceEEeccccceeEEEec--cccceeeeeCCCCCeeeEEEecc-ccee
Confidence 8899999999999877766 46667779999999999 34445567889999999999854 5799
Q ss_pred EEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeE
Q psy307 453 SAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKI 532 (1019)
Q Consensus 453 S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I 532 (1019)
+||.||.|.+|++-+.+++.+......+. |+. -.......|++++..|...++++|+.+|.|
T Consensus 343 sGSdnG~IaLWs~~KKkplf~~~~AHgv~-----~~~-------------~~~~~~~Witsla~i~~sdL~asGS~~G~v 404 (479)
T KOG0299|consen 343 SGSDNGSIALWSLLKKKPLFTSRLAHGVI-----PEL-------------DPVNGNFWITSLAVIPGSDLLASGSWSGCV 404 (479)
T ss_pred eccCCceEEEeeecccCceeEeecccccc-----CCc-------------cccccccceeeeEecccCceEEecCCCCce
Confidence 99999999999999999887776432211 110 000112578999999999999999999999
Q ss_pred EEEEccCccc-ccceeEEeccccccceEEEEEcCCCCEEEEEe
Q psy307 533 LIFSALNRFK-LNRKKTFEGHMVAGYACSLDFSPDMSYLISGD 574 (1019)
Q Consensus 533 ~iwd~~~~~~-~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs 574 (1019)
++|-+.++.+ ++.+..+. ..+.|++++|+++|+++++|.
T Consensus 405 rLW~i~~g~r~i~~l~~ls---~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 405 RLWKIEDGLRAINLLYSLS---LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred EEEEecCCccccceeeecc---cccEEEEEEEccCCCEEEEec
Confidence 9999987643 23333333 348899999999999776663
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-18 Score=189.18 Aligned_cols=280 Identities=11% Similarity=0.180 Sum_probs=221.4
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-EEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-RCV 372 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~~~ 372 (1019)
+.+....+++++.|+.++++...+... ..++.+.--..+|.+.+|.|++...+++++.-.....||+.... ..+
T Consensus 221 FHp~~plllvaG~d~~lrifqvDGk~N-----~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~ 295 (514)
T KOG2055|consen 221 FHPTAPLLLVAGLDGTLRIFQVDGKVN-----PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKL 295 (514)
T ss_pred ecCCCceEEEecCCCcEEEEEecCccC-----hhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccc
Confidence 455667889999999999999886554 35666666778999999999755599999999999999995422 123
Q ss_pred EEecccC-ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEE
Q psy307 373 RTYYGHR-QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNF 451 (1019)
Q Consensus 373 ~~~~gh~-~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l 451 (1019)
....|+. ..+.....++++ ++|+..+..|.|.+... .++..+..++ -.+.|..++|+.+++.|
T Consensus 296 ~~~~g~e~~~~e~FeVShd~--------------~fia~~G~~G~I~lLha-kT~eli~s~K-ieG~v~~~~fsSdsk~l 359 (514)
T KOG2055|consen 296 KPPYGVEEKSMERFEVSHDS--------------NFIAIAGNNGHIHLLHA-KTKELITSFK-IEGVVSDFTFSSDSKEL 359 (514)
T ss_pred cCCCCcccchhheeEecCCC--------------CeEEEcccCceEEeehh-hhhhhhheee-eccEEeeEEEecCCcEE
Confidence 3344443 467778888888 69999999999999987 4555555443 45789999999999999
Q ss_pred EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCe
Q psy307 452 ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNK 531 (1019)
Q Consensus 452 ~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~ 531 (1019)
++++.+|.|.+||++...|++++...+.+. -+++|.+++|.|||+||..|.
T Consensus 360 ~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~-----------------------------gts~~~S~ng~ylA~GS~~Gi 410 (514)
T KOG2055|consen 360 LASGGTGEVYVWNLRQNSCLHRFVDDGSVH-----------------------------GTSLCISLNGSYLATGSDSGI 410 (514)
T ss_pred EEEcCCceEEEEecCCcceEEEEeecCccc-----------------------------eeeeeecCCCceEEeccCcce
Confidence 999999999999999999999887655432 345778899999999999999
Q ss_pred EEEEEccCc---ccccceeEEeccccccceEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeeeeeccC---CCEEEE
Q psy307 532 ILIFSALNR---FKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA--DGKCYIWDWKTTKLFKKWKAHD---GVCIST 603 (1019)
Q Consensus 532 I~iwd~~~~---~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~--DG~I~IWDl~t~~~l~~l~~h~---~~V~sl 603 (1019)
|.|||..+. ....+++.+..-. ..|++++|+||+++||.+|. +..+++-.+.+......|.... +.|+|+
T Consensus 411 VNIYd~~s~~~s~~PkPik~~dNLt--t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~ 488 (514)
T KOG2055|consen 411 VNIYDGNSCFASTNPKPIKTVDNLT--TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCM 488 (514)
T ss_pred EEEeccchhhccCCCCchhhhhhhh--eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEE
Confidence 999996543 2233444444443 56999999999999988774 5689999999988888776543 568999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEe
Q psy307 604 LWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 604 ~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
+|+|.+ .+++.|..+|.+.+|-
T Consensus 489 aFSP~s-G~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 489 AFSPNS-GYLAVGNEAGRVHLFK 510 (514)
T ss_pred EecCCC-ceEEeecCCCceeeEe
Confidence 999988 5999999999998873
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.7e-19 Score=201.71 Aligned_cols=291 Identities=19% Similarity=0.289 Sum_probs=229.6
Q ss_pred CCCCCCeeeeCC-CCCceeeecCCCCCCccCCccceeee-ccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC---C
Q psy307 294 TDYQGRSFLHPP-HDVGTNLRSDTPPDRCFLPKTQVHTW-EGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK---E 368 (1019)
Q Consensus 294 ~~~~gr~~~~~~-~D~~v~lw~~~~~~~~~lp~~~i~~l-~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~---~ 368 (1019)
+..+|+.++..+ ..|.+.+|+.... +.+..+ ..|.++|....|-| +..+++|++.|+.+++|-.+. .
T Consensus 252 FrtDG~p~las~~~~G~m~~wDLe~k-------kl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg~ 323 (910)
T KOG1539|consen 252 FRTDGNPLLASGRSNGDMAFWDLEKK-------KLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDGV 323 (910)
T ss_pred eccCCCeeEEeccCCceEEEEEcCCC-------eeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCCCc
Confidence 566788876554 5588999998742 334444 58999999999999 689999999999999996642 2
Q ss_pred cEEEEEecccCccEeEEEEcC-CCCceeEE--------------------------------------------------
Q psy307 369 RRCVRTYYGHRQAVRDICFNN-TGTNFISA-------------------------------------------------- 397 (1019)
Q Consensus 369 ~~~~~~~~gh~~~V~~i~fsp-dg~~~vs~-------------------------------------------------- 397 (1019)
.+.++.-.||..+-.||.|.. +|..++++
T Consensus 324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~ 403 (910)
T KOG1539|consen 324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF 403 (910)
T ss_pred chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence 366777789999999999873 33322211
Q ss_pred ---------------------Eee----------------------------cCCCCcEEEEEeCCCcEEEEEccCCCeE
Q psy307 398 ---------------------IRW----------------------------FPKSAHLLLSCSMDCRVKLWEVYKEHRC 428 (1019)
Q Consensus 398 ---------------------i~~----------------------------~p~~~~~L~sgs~Dg~I~IWDl~~~~~~ 428 (1019)
-.| ...++++.+.|+..|.|-+|++ ..+-.
T Consensus 404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNm-QSGi~ 482 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNM-QSGIH 482 (910)
T ss_pred ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEc-ccCee
Confidence 001 1224667788888999999998 55555
Q ss_pred EEEE---ccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeC
Q psy307 429 VRTY---YGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIAD 505 (1019)
Q Consensus 429 ~~~l---~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~ 505 (1019)
...+ ..|.++|++++...-++.++|++.+|.+++||..+...+..+.....+.++
T Consensus 483 r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~i---------------------- 540 (910)
T KOG1539|consen 483 RKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGI---------------------- 540 (910)
T ss_pred ecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCccee----------------------
Confidence 5666 589999999999988899999999999999999998887777765544444
Q ss_pred CCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy307 506 PTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWK 585 (1019)
Q Consensus 506 ~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~ 585 (1019)
..+.....++++..|-.|+++|..+. ...+.|.||. ..|++++|||||++|++++.|++|++||+.
T Consensus 541 ---------v~hr~s~l~a~~~ddf~I~vvD~~t~---kvvR~f~gh~--nritd~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 541 ---------VYHRVSDLLAIALDDFSIRVVDVVTR---KVVREFWGHG--NRITDMTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred ---------eeeehhhhhhhhcCceeEEEEEchhh---hhhHHhhccc--cceeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence 44445668889999999999999876 4567889998 679999999999999999999999999999
Q ss_pred CCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCC-CcEEEEecccee
Q psy307 586 TTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD-AATAKVQDANIV 631 (1019)
Q Consensus 586 t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~D-g~I~iwwd~~i~ 631 (1019)
++.++..+.. +.+++++.|+|+| .+|+|+..| ..|++|-+....
T Consensus 607 t~~lID~~~v-d~~~~sls~SPng-D~LAT~Hvd~~gIylWsNkslF 651 (910)
T KOG1539|consen 607 TGTLIDGLLV-DSPCTSLSFSPNG-DFLATVHVDQNGIYLWSNKSLF 651 (910)
T ss_pred CcceeeeEec-CCcceeeEECCCC-CEEEEEEecCceEEEEEchhHh
Confidence 9999988764 5689999999999 599999998 567777665443
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=196.25 Aligned_cols=246 Identities=16% Similarity=0.219 Sum_probs=199.9
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccC-ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHR-QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD 414 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~-~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D 414 (1019)
.+|.|++|+.+ ...||.+-.||.|-||++..+.-+...+.|+. ..|.+++|++.+ .|++.+.+
T Consensus 26 s~I~slA~s~k-S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~---------------RLFS~g~s 89 (691)
T KOG2048|consen 26 SEIVSLAYSHK-SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG---------------RLFSSGLS 89 (691)
T ss_pred cceEEEEEecc-CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC---------------eEEeecCC
Confidence 48999999997 56699999999999999988777777777765 568899998654 79999999
Q ss_pred CcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeee
Q psy307 415 CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL 494 (1019)
Q Consensus 415 g~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~ 494 (1019)
|.|.-||+ ...+....+....+.|++++.+|.+..++.|+.||.+...+...++.......
T Consensus 90 g~i~EwDl-~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l------------------ 150 (691)
T KOG2048|consen 90 GSITEWDL-HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSL------------------ 150 (691)
T ss_pred ceEEEEec-ccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeec------------------
Confidence 99999999 77778888888999999999999999999999999888888777665433221
Q ss_pred ccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeE-Eecc-c-cccceEEEEEcCCCCEEE
Q psy307 495 DIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKT-FEGH-M-VAGYACSLDFSPDMSYLI 571 (1019)
Q Consensus 495 ~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~-l~gh-~-~~~~V~~v~fspdg~~La 571 (1019)
......+.+++|+|++..|++|+.||.|++||+..+........ +.+- . ...-|.++.|-.++ .|+
T Consensus 151 ----------~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~ 219 (691)
T KOG2048|consen 151 ----------MRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIA 219 (691)
T ss_pred ----------ccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEE
Confidence 11235567788889999999999999999999987754431110 1111 1 22447778877665 589
Q ss_pred EEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEecc
Q psy307 572 SGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDA 628 (1019)
Q Consensus 572 sgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~ 628 (1019)
+|++-|+|.+||...+.+++.+..|.+.|.+++..+++ ..++++|.|+.|..+...
T Consensus 220 sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 220 SGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLT 275 (691)
T ss_pred EecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCC-CeEEEccCCCceEEEEec
Confidence 99999999999999999999999999999999999987 589999999999776443
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.9e-21 Score=214.71 Aligned_cols=224 Identities=24% Similarity=0.402 Sum_probs=190.6
Q ss_pred CCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEE
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRT 374 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~ 374 (1019)
...+|.+++|+.|..+.||....+. .+..|.||..+|-++.|++. ..+|++|+.+|+|++||+ ...+.+++
T Consensus 37 ~~s~r~~~~Gg~~~k~~L~~i~kp~-------~i~S~~~hespIeSl~f~~~-E~LlaagsasgtiK~wDl-eeAk~vrt 107 (825)
T KOG0267|consen 37 RKSSRSLVTGGEDEKVNLWAIGKPN-------AITSLTGHESPIESLTFDTS-ERLLAAGSASGTIKVWDL-EEAKIVRT 107 (825)
T ss_pred eccceeeccCCCceeeccccccCCc-------hhheeeccCCcceeeecCcc-hhhhcccccCCceeeeeh-hhhhhhhh
Confidence 4567899999999999999877544 34569999999999999995 789999999999999999 56677899
Q ss_pred ecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEE
Q psy307 375 YYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISA 454 (1019)
Q Consensus 375 ~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~ 454 (1019)
+.||...+..+.|+|-+ .+.++|+.|+.+++||+ ....|...+.+|...|.++.|+|+|++++++
T Consensus 108 Ltgh~~~~~sv~f~P~~--------------~~~a~gStdtd~~iwD~-Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g 172 (825)
T KOG0267|consen 108 LTGHLLNITSVDFHPYG--------------EFFASGSTDTDLKIWDI-RKKGCSHTYKSHTRVVDVLRLSPDGRWVASG 172 (825)
T ss_pred hhccccCcceeeeccce--------------EEeccccccccceehhh-hccCceeeecCCcceeEEEeecCCCceeecc
Confidence 99999999999999988 67899999999999999 5567889999999999999999999999999
Q ss_pred EcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEE
Q psy307 455 GYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILI 534 (1019)
Q Consensus 455 s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~i 534 (1019)
+.|.+++|||...|+.+..|..+. ..+.++.++|..-+++.|+.|++|++
T Consensus 173 ~ed~tvki~d~~agk~~~ef~~~e------------------------------~~v~sle~hp~e~Lla~Gs~d~tv~f 222 (825)
T KOG0267|consen 173 GEDNTVKIWDLTAGKLSKEFKSHE------------------------------GKVQSLEFHPLEVLLAPGSSDRTVRF 222 (825)
T ss_pred CCcceeeeeccccccccccccccc------------------------------ccccccccCchhhhhccCCCCceeee
Confidence 999999999999999888887432 34455566777888999999999999
Q ss_pred EEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC
Q psy307 535 FSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG 577 (1019)
Q Consensus 535 wd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG 577 (1019)
||+.+-..+ ...... ...|.+..|+|+|..+++|....
T Consensus 223 ~dletfe~I---~s~~~~--~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 223 WDLETFEVI---SSGKPE--TDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eccceeEEe---eccCCc--cCCceeeeecCCceeeecCchhh
Confidence 999864222 222222 36689999999999999987764
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.2e-18 Score=183.05 Aligned_cols=276 Identities=13% Similarity=0.198 Sum_probs=206.2
Q ss_pred CCCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCC-CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcE
Q psy307 292 DPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHT-KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERR 370 (1019)
Q Consensus 292 ~~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~-~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~ 370 (1019)
..+.+.+..++...--+.+..|....... .+....++++. +-|.|++|.++ + -++||..+|.|.||+. ...+
T Consensus 206 a~FHPtd~nliit~Gk~H~~Fw~~~~~~l----~k~~~~fek~ekk~Vl~v~F~en-g-dviTgDS~G~i~Iw~~-~~~~ 278 (626)
T KOG2106|consen 206 ATFHPTDPNLIITCGKGHLYFWTLRGGSL----VKRQGIFEKREKKFVLCVTFLEN-G-DVITGDSGGNILIWSK-GTNR 278 (626)
T ss_pred EEeccCCCcEEEEeCCceEEEEEccCCce----EEEeeccccccceEEEEEEEcCC-C-CEEeecCCceEEEEeC-CCce
Confidence 44566666666555567888996664332 23344555554 57999999995 4 4889999999999998 4445
Q ss_pred EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCC-------------------------
Q psy307 371 CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE------------------------- 425 (1019)
Q Consensus 371 ~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~------------------------- 425 (1019)
..+....|.+.|.+++...+| .|++|+.|..|..||-.-.
T Consensus 279 ~~k~~~aH~ggv~~L~~lr~G---------------tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~ 343 (626)
T KOG2106|consen 279 ISKQVHAHDGGVFSLCMLRDG---------------TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDIL 343 (626)
T ss_pred EEeEeeecCCceEEEEEecCc---------------cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEE
Confidence 555555999999999999998 4777999999999984100
Q ss_pred --------------CeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCe
Q psy307 426 --------------HRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDK 491 (1019)
Q Consensus 426 --------------~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~ 491 (1019)
........+|....+.++.+|+...+++++.|+.+++|+ ..+++.+.....+
T Consensus 344 vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~------------ 409 (626)
T KOG2106|consen 344 VGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDP------------ 409 (626)
T ss_pred EeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCc------------
Confidence 001123357888999999999999999999999999999 5555554444443
Q ss_pred eeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEE
Q psy307 492 QHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLI 571 (1019)
Q Consensus 492 ~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~La 571 (1019)
..++.|+|.| .++.|+..|...+.|..+.. .+.-|....+++++.|+|+|.+||
T Consensus 410 -------------------~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~------lv~~~~d~~~ls~v~ysp~G~~lA 463 (626)
T KOG2106|consen 410 -------------------AECADFHPSG-VVAVGTATGRWFVLDTETQD------LVTIHTDNEQLSVVRYSPDGAFLA 463 (626)
T ss_pred -------------------eeEeeccCcc-eEEEeeccceEEEEecccce------eEEEEecCCceEEEEEcCCCCEEE
Confidence 3455566777 89999999999999998742 222333347899999999999999
Q ss_pred EEeCCCeEEEEeCCC-Cceeeee-eccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEecccee
Q psy307 572 SGDADGKCYIWDWKT-TKLFKKW-KAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIV 631 (1019)
Q Consensus 572 sgs~DG~I~IWDl~t-~~~l~~l-~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ 631 (1019)
.|+.|+.|+||-+.. +..+... +.|..+|+.+.|++|+ +++.+-+.|-.|..| .....
T Consensus 464 vgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds-~~~~~~S~d~eiLyW-~~~~~ 523 (626)
T KOG2106|consen 464 VGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDS-QFLVSNSGDYEILYW-KPSEC 523 (626)
T ss_pred EecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCC-ceEEeccCceEEEEE-ccccC
Confidence 999999999999865 4444443 3445799999999998 799999999888555 54433
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-19 Score=182.91 Aligned_cols=269 Identities=18% Similarity=0.260 Sum_probs=177.8
Q ss_pred EEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCc-----eEEEEecCCceEEEEEecCCCeeeeccCC------
Q psy307 430 RTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGE-----CISRFTSRKVAYCVKFHPDEDKQHLDIPV------ 498 (1019)
Q Consensus 430 ~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~-----~i~~~~~~~~v~~v~~~p~~~~~~~~~~~------ 498 (1019)
..+++|.+.|++++|+.||++|++++.|++|+||+++... +++.--.-..++.+.|.||-...++....
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 4688999999999999999999999999999999997642 22221122367788888887665552111
Q ss_pred ------------------CceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEE
Q psy307 499 ------------------DMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560 (1019)
Q Consensus 499 ------------------~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~ 560 (1019)
+...+...+.-.+..+-...++++|++++.|..|.+|+++. .. +..+.... ..-..
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG-q~---L~~idtnq--~~n~~ 233 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG-QL---LQSIDTNQ--SSNYD 233 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC-ce---eeeecccc--ccccc
Confidence 11112222333344566677889999999999999999984 22 33333322 22345
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCC---CC-----ceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceee
Q psy307 561 LDFSPDMSYLISGDADGKCYIWDWK---TT-----KLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVK 632 (1019)
Q Consensus 561 v~fspdg~~Lasgs~DG~I~IWDl~---t~-----~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~k 632 (1019)
.+.||+|++|++++-.-.|++|.+- .| +.+..+++|...|..++|+++. ..++|.|.||++++ ||.++.-
T Consensus 234 aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S-~r~vtvSkDG~wri-wdtdVrY 311 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS-TRAVTVSKDGKWRI-WDTDVRY 311 (420)
T ss_pred eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc-ceeEEEecCCcEEE-eeccceE
Confidence 7899999999999998899999862 22 3456789999999999999988 68999999999965 5666643
Q ss_pred eeeeccccCCceeecccccccchhhhhhhcccccC-CCceeEEEeecCCCceEEecccccc------ccCCceEEEEecC
Q psy307 633 IAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLS-DSEQYALQFSETNNKNYITEKNRNE------IKNGSVLRLAFSA 705 (1019)
Q Consensus 633 i~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls-~~e~~al~~sd~~~~~~it~~~~~~------I~ng~Vl~LafSP 705 (1019)
... .-+.++.... .++-+.....|. +.++ .+..+++ +.+.+..+.....++. +|.+.|.+|+|+|
T Consensus 312 ~~~----qDpk~Lk~g~-~pl~aag~~p~R-L~lsP~g~~lA~--s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~ 383 (420)
T KOG2096|consen 312 EAG----QDPKILKEGS-APLHAAGSEPVR-LELSPSGDSLAV--SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS 383 (420)
T ss_pred ecC----CCchHhhcCC-cchhhcCCCceE-EEeCCCCcEEEe--ecCCceEEEEcccCccchhHHHhhcCceeeEEecC
Confidence 332 2222222111 223222333332 2222 3333333 3444444444444443 4799999999999
Q ss_pred CccHHHHHhhc
Q psy307 706 SKTADDILSKL 716 (1019)
Q Consensus 706 d~~a~~Ilt~~ 716 (1019)
++ +.++++.
T Consensus 384 ~g--~~~atcG 392 (420)
T KOG2096|consen 384 DG--KYIATCG 392 (420)
T ss_pred CC--cEEeeec
Confidence 98 5555553
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=192.73 Aligned_cols=154 Identities=16% Similarity=0.232 Sum_probs=119.0
Q ss_pred CCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecc
Q psy307 298 GRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG 377 (1019)
Q Consensus 298 gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g 377 (1019)
.-.+++++.|-.|+||.........+ ...-..+.+-.-.|-|+.|+|....+|++ +..|.++|||+ ..++.+..+.+
T Consensus 92 D~LLAT~S~D~~VKiW~lp~g~~q~L-Sape~~~g~~~~~vE~l~fHpTaDgil~s-~a~g~v~i~D~-stqk~~~el~~ 168 (1012)
T KOG1445|consen 92 DELLATCSRDEPVKIWKLPRGHSQKL-SAPEIDVGGGNVIVECLRFHPTADGILAS-GAHGSVYITDI-STQKTAVELSG 168 (1012)
T ss_pred hhhhhcccCCCeeEEEecCCCccccc-CCcceeecCCceEEEEeecccCcCceEEe-ccCceEEEEEc-ccCceeecccC
Confidence 45688999999999998873322222 12223444555678999999965555555 45799999999 56677888999
Q ss_pred cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcccccc-EeEEEEecCCCEEEEEEc
Q psy307 378 HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQA-VRDICFNNTGTNFISAGY 456 (1019)
Q Consensus 378 h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~-V~sl~fspdg~~l~S~s~ 456 (1019)
|...|.+..|+.|| .+|++++.|..|+|||.+...+.++...+|.+. =..+.|.-+-..|++.+.
T Consensus 169 h~d~vQSa~WseDG--------------~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF 234 (1012)
T KOG1445|consen 169 HTDKVQSADWSEDG--------------KLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGF 234 (1012)
T ss_pred CchhhhccccccCC--------------ceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhhccc
Confidence 99999999999999 799999999999999999999999999999764 233567554446888777
Q ss_pred C----CeEEEEECCCC
Q psy307 457 D----RYLKLWDTESG 468 (1019)
Q Consensus 457 D----g~I~lWDl~t~ 468 (1019)
+ +.|++||++..
T Consensus 235 ~~~R~reV~~~Dtr~f 250 (1012)
T KOG1445|consen 235 TTKRIREVRAYDTRKF 250 (1012)
T ss_pred chhhheeeeeeecccc
Confidence 6 46999998753
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-19 Score=192.39 Aligned_cols=239 Identities=13% Similarity=0.183 Sum_probs=186.1
Q ss_pred cCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc--EEEEEec--ccCccEeEEEEcCCCCceeEEEeecCCCCcEE
Q psy307 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER--RCVRTYY--GHRQAVRDICFNNTGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~--~~~~~~~--gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L 408 (1019)
.|-.-|.++.++.. .+.++||+. |.|+|||+...+ ..+..+. ....-|+++.+.||| ..|
T Consensus 417 ~HGEvVcAvtIS~~-trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg--------------rtL 480 (705)
T KOG0639|consen 417 AHGEVVCAVTISNP-TRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG--------------RTL 480 (705)
T ss_pred ccCcEEEEEEecCC-cceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCC--------------ceE
Confidence 57788888999885 678888875 789999995432 2222222 123456666677766 678
Q ss_pred EEEeCCCcEEEEEccCCCe-EEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEec
Q psy307 409 LSCSMDCRVKLWEVYKEHR-CVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHP 487 (1019)
Q Consensus 409 ~sgs~Dg~I~IWDl~~~~~-~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p 487 (1019)
++|+.-.++.|||+..... ....+....-.+.+++.+||.+..+++..||.|.|||+.....++.|.++
T Consensus 481 ivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGh---------- 550 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGH---------- 550 (705)
T ss_pred EeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCC----------
Confidence 8899999999999954432 33344444556788899999999999999999999999998888887754
Q ss_pred CCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCC
Q psy307 488 DEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM 567 (1019)
Q Consensus 488 ~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg 567 (1019)
...+.||.++++|..|.+|+-|++|+.||++.+.. +..|.-...|.++.++|++
T Consensus 551 --------------------tDGascIdis~dGtklWTGGlDntvRcWDlregrq------lqqhdF~SQIfSLg~cP~~ 604 (705)
T KOG0639|consen 551 --------------------TDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ------LQQHDFSSQIFSLGYCPTG 604 (705)
T ss_pred --------------------CCCceeEEecCCCceeecCCCccceeehhhhhhhh------hhhhhhhhhheecccCCCc
Confidence 24466788889999999999999999999998733 3345545679999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 568 SYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 568 ~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.+|+.|-.++.+.|.... +.....+..|...|.++.|.+.| .++++.|.|+.+..|
T Consensus 605 dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cG-kwfvStGkDnlLnaw 660 (705)
T KOG0639|consen 605 DWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAW 660 (705)
T ss_pred cceeeecccCcEEEEecC-CccceeecccccEEEEEEecccC-ceeeecCchhhhhhc
Confidence 999999999988887754 33445567799999999999998 699999999888665
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=180.44 Aligned_cols=271 Identities=21% Similarity=0.351 Sum_probs=199.4
Q ss_pred cCCCCeEEEEEcCC---CCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEE
Q psy307 333 GHTKGISAIRWFPK---SAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLL 409 (1019)
Q Consensus 333 gH~~~V~~i~fspd---~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~ 409 (1019)
.|...-..++|+-+ +..++|.||.-|.|+|.|+ ..+++...+.+|...|+.|.+.|+.+ ++++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~-~~~~~~~~~~ghG~sINeik~~p~~~-------------qlvl 152 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDV-VSGQCSKNYRGHGGSINEIKFHPDRP-------------QLVL 152 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEec-chhhhccceeccCccchhhhcCCCCC-------------cEEE
Confidence 36777888888765 3458999999999999999 67788899999999999998888764 8999
Q ss_pred EEeCCCcEEEEEccCCCeEEEEE---ccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEe
Q psy307 410 SCSMDCRVKLWEVYKEHRCVRTY---YGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFH 486 (1019)
Q Consensus 410 sgs~Dg~I~IWDl~~~~~~~~~l---~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~ 486 (1019)
++|.|..|++|++ .+..++..+ .+|.+.|.++.|+++|.+|+|+|.|.+|++|++...+....++ .+..|+
T Consensus 153 s~SkD~svRlwnI-~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE-----~s~~~~ 226 (385)
T KOG1034|consen 153 SASKDHSVRLWNI-QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLE-----LSITYS 226 (385)
T ss_pred EecCCceEEEEec-cCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhh-----hhcccC
Confidence 9999999999999 677777776 5799999999999999999999999999999998654332222 124556
Q ss_pred cCCCeeeeccCCC---ceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEcc-Cccc----------ccceeEEecc
Q psy307 487 PDEDKQHLDIPVD---MKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSAL-NRFK----------LNRKKTFEGH 552 (1019)
Q Consensus 487 p~~~~~~~~~~~~---~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~-~~~~----------~~~~~~l~gh 552 (1019)
|++...-+..+.. .-...+.|...|.|+.|- |+++++-|.+|.|..|... -... ......+.-.
T Consensus 227 ~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~ 304 (385)
T KOG1034|consen 227 PNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP 304 (385)
T ss_pred CCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC
Confidence 6655433211111 111233455556666664 6889999999999999872 1111 1112223333
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--eeeecc--CCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 553 MVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLF--KKWKAH--DGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 553 ~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l--~~l~~h--~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
....+-...+|.|-++.||.|...|.|++||++...+. .++..+ ...|...+|+.++ +.|+....|++|..|.
T Consensus 305 ~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dg-s~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 305 MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDG-SILVLVCDDGTVWRWD 381 (385)
T ss_pred ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccC-cEEEEEeCCCcEEEEE
Confidence 33333445677788899999999999999999987653 223222 3478999999998 7999999999998874
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-17 Score=193.79 Aligned_cols=248 Identities=15% Similarity=0.224 Sum_probs=195.2
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEE
Q psy307 332 EGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSC 411 (1019)
Q Consensus 332 ~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sg 411 (1019)
-+|+.+-+.|+|.|+ |..|++++.||.|++|+.......-.++..+...|.+++... .+|++|
T Consensus 10 yaht~G~t~i~~d~~-gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s----------------~~f~~~ 72 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPD-GEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS----------------NHFLTG 72 (933)
T ss_pred hhccCceEEEEEcCC-CCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc----------------cceEEe
Confidence 379999999999996 779999999999999998554232333333666676665443 579999
Q ss_pred eCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCe
Q psy307 412 SMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDK 491 (1019)
Q Consensus 412 s~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~ 491 (1019)
+.+++|.+|.+ ..+..-..+....-++++++|+-+|++++.||.|-.|++-++.+......+..
T Consensus 73 s~~~tv~~y~f-ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg--------------- 136 (933)
T KOG1274|consen 73 SEQNTVLRYKF-PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG--------------- 136 (933)
T ss_pred eccceEEEeeC-CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc---------------
Confidence 99999999999 44455555666678899999999999999999999999999887766555543
Q ss_pred eeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEe---ccccccceEEEEEcCCCC
Q psy307 492 QHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFE---GHMVAGYACSLDFSPDMS 568 (1019)
Q Consensus 492 ~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~---gh~~~~~V~~v~fspdg~ 568 (1019)
+..+|.++.++|++.+||+.+.||.|++||+.++.....+..+. +...+..++.++|+|+|.
T Consensus 137 ---------------h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g 201 (933)
T KOG1274|consen 137 ---------------HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG 201 (933)
T ss_pred ---------------cCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC
Confidence 44677788889999999999999999999999874332221111 111235577899999988
Q ss_pred EEEEEeCCCeEEEEeCCCCceeeeee--ccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccc
Q psy307 569 YLISGDADGKCYIWDWKTTKLFKKWK--AHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDAN 629 (1019)
Q Consensus 569 ~Lasgs~DG~I~IWDl~t~~~l~~l~--~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~ 629 (1019)
.++..+.|+.|.+|+..++.....+. .|...+..++|+|.| .+||+++.||.|.+ |+.+
T Consensus 202 ~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~v-Wnv~ 262 (933)
T KOG1274|consen 202 TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG-KYIAASTLDGQILV-WNVD 262 (933)
T ss_pred eEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCC-cEEeeeccCCcEEE-Eecc
Confidence 88888899999999999998888775 344569999999998 79999999999955 4554
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=182.96 Aligned_cols=240 Identities=19% Similarity=0.289 Sum_probs=176.2
Q ss_pred CeeeeCCCCCceeeecCCCCCCc---------cCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc
Q psy307 299 RSFLHPPHDVGTNLRSDTPPDRC---------FLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER 369 (1019)
Q Consensus 299 r~~~~~~~D~~v~lw~~~~~~~~---------~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~ 369 (1019)
-..++=+..|.|.+|+..+.-.+ +...++++++.+|.+.=++++|||-....|+||..-+.|++|...++.
T Consensus 166 ~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~ 245 (440)
T KOG0302|consen 166 VLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS 245 (440)
T ss_pred ceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCc
Confidence 34445556789999988654333 234578999999999999999999655568899889999999986543
Q ss_pred EEE--EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC-eEEEEEccccccEeEEEEec
Q psy307 370 RCV--RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH-RCVRTYYGHRQAVRDICFNN 446 (1019)
Q Consensus 370 ~~~--~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~fsp 446 (1019)
-.+ +.+.+|+..|-+++|||... ..|+|||.||+|+|||++... +.....+.|.+.|+.|.|+.
T Consensus 246 W~vd~~Pf~gH~~SVEDLqWSptE~-------------~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr 312 (440)
T KOG0302|consen 246 WKVDQRPFTGHTKSVEDLQWSPTED-------------GVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR 312 (440)
T ss_pred eeecCccccccccchhhhccCCccC-------------ceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC
Confidence 322 34678999999999888764 799999999999999997663 33334489999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCC---ceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC-CCE
Q psy307 447 TGTNFISAGYDRYLKLWDTESG---ECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN-NKW 522 (1019)
Q Consensus 447 dg~~l~S~s~Dg~I~lWDl~t~---~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd-g~~ 522 (1019)
+-.+|++|+.||+++|||++.- +++..|.. |..+|+++.|+|. ...
T Consensus 313 ~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~------------------------------Hk~pItsieW~p~e~s~ 362 (440)
T KOG0302|consen 313 REPLLASGGDDGTLSIWDLRQFKSGQPVATFKY------------------------------HKAPITSIEWHPHEDSV 362 (440)
T ss_pred CcceeeecCCCceEEEEEhhhccCCCcceeEEe------------------------------ccCCeeEEEeccccCce
Confidence 8889999999999999999753 34444443 3345566666654 467
Q ss_pred EEEEecCCeEEEEEccCcccc--------c-----ceeEEeccccccceEEEEEcCCC-CEEEEEeCCCeEEEE
Q psy307 523 LACQSMDNKILIFSALNRFKL--------N-----RKKTFEGHMVAGYACSLDFSPDM-SYLISGDADGKCYIW 582 (1019)
Q Consensus 523 Lasgs~Dg~I~iwd~~~~~~~--------~-----~~~~l~gh~~~~~V~~v~fspdg-~~Lasgs~DG~I~IW 582 (1019)
|++++.|++|.+||+.-.... . +-+.+--|.....+..+.|+++- .+|++.+.|| +.||
T Consensus 363 iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 363 IAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 888999999999998632110 0 01123334433557778888853 4788888888 4555
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.4e-18 Score=174.91 Aligned_cols=279 Identities=15% Similarity=0.216 Sum_probs=199.3
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.|+.-|..++.|..||.|.+|+... ...-+.+.+|..+|++++||++ |+.|+|+|.|..|++||+..+ .++
T Consensus 30 ~Fs~~G~~lAvGc~nG~vvI~D~~T-------~~iar~lsaH~~pi~sl~WS~d-gr~LltsS~D~si~lwDl~~g-s~l 100 (405)
T KOG1273|consen 30 QFSRWGDYLAVGCANGRVVIYDFDT-------FRIARMLSAHVRPITSLCWSRD-GRKLLTSSRDWSIKLWDLLKG-SPL 100 (405)
T ss_pred EeccCcceeeeeccCCcEEEEEccc-------cchhhhhhccccceeEEEecCC-CCEeeeecCCceeEEEeccCC-Cce
Confidence 4788899999999999999998763 2356788999999999999996 899999999999999999544 455
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcc---ccccEeEEEEecCCC
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG---HRQAVRDICFNNTGT 449 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~---H~~~V~sl~fspdg~ 449 (1019)
+.+. ...+|..+.|+|.. .+..++.-.+..-.+-++......+..... -+..-.+..|.+.|+
T Consensus 101 ~rir-f~spv~~~q~hp~k-------------~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~ 166 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRK-------------RNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK 166 (405)
T ss_pred eEEE-ccCccceeeecccc-------------CCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC
Confidence 5544 34567766666644 344444444444444444221111111000 011122336899999
Q ss_pred EEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC
Q psy307 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD 529 (1019)
Q Consensus 450 ~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D 529 (1019)
++++|...|.+.++|..+-+|+..+.... ...|..+.++..|..|++.+.|
T Consensus 167 yIitGtsKGkllv~~a~t~e~vas~rits-----------------------------~~~IK~I~~s~~g~~liiNtsD 217 (405)
T KOG1273|consen 167 YIITGTSKGKLLVYDAETLECVASFRITS-----------------------------VQAIKQIIVSRKGRFLIINTSD 217 (405)
T ss_pred EEEEecCcceEEEEecchheeeeeeeech-----------------------------heeeeEEEEeccCcEEEEecCC
Confidence 99999999999999999998887765321 1346677888899999999999
Q ss_pred CeEEEEEccCccc------ccceeEEeccccccceEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeeeeeccC-CCEE
Q psy307 530 NKILIFSALNRFK------LNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA-DGKCYIWDWKTTKLFKKWKAHD-GVCI 601 (1019)
Q Consensus 530 g~I~iwd~~~~~~------~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~-DG~I~IWDl~t~~~l~~l~~h~-~~V~ 601 (1019)
..|+.|++..-.. +.....+..-.+...-.+++||.+|.|++.|+. -..++||.-..|.+++.+.|.. ....
T Consensus 218 RvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~ 297 (405)
T KOG1273|consen 218 RVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELL 297 (405)
T ss_pred ceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhhee
Confidence 9999999863211 111111111111233457899999999988874 3579999999999999998877 4678
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 602 STLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 602 sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.+.|+|-.+ .+++. ..|.+++|
T Consensus 298 DV~whp~rp-~i~si-~sg~v~iw 319 (405)
T KOG1273|consen 298 DVNWHPVRP-IIASI-ASGVVYIW 319 (405)
T ss_pred eccccccee-eeeec-cCCceEEE
Confidence 999999874 56665 67888777
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-18 Score=186.35 Aligned_cols=288 Identities=18% Similarity=0.231 Sum_probs=210.4
Q ss_pred CCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC
Q psy307 335 TKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM 413 (1019)
Q Consensus 335 ~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~ 413 (1019)
.++|++|.|+| +..+|++|+.||+++||.+.... ..++.+.-...+|.+.+|.|+|. ..+++++.
T Consensus 213 ~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~-------------~~i~~s~r 278 (514)
T KOG2055|consen 213 HGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGH-------------SVIFTSGR 278 (514)
T ss_pred cCCceEEEecC-CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCc-------------eEEEeccc
Confidence 46899999999 58999999999999999985432 23445555567888888888884 58999999
Q ss_pred CCcEEEEEccCCC-eEEEEEcccc-ccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCe
Q psy307 414 DCRVKLWEVYKEH-RCVRTYYGHR-QAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDK 491 (1019)
Q Consensus 414 Dg~I~IWDl~~~~-~~~~~l~~H~-~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~ 491 (1019)
...++.||+.+.. ..+....++. ..+.....++++++|+..|..|.|.|....+++.+.++...+.+.
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~---------- 348 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVS---------- 348 (514)
T ss_pred ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEe----------
Confidence 9999999994332 1233334443 456677889999999999999999999999999988887655444
Q ss_pred eeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEE
Q psy307 492 QHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLI 571 (1019)
Q Consensus 492 ~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~La 571 (1019)
.++|+.+++.|++++.+|.|.+||++.. .++..+.... +..-++++.|++|.|||
T Consensus 349 ---------------------~~~fsSdsk~l~~~~~~GeV~v~nl~~~---~~~~rf~D~G-~v~gts~~~S~ng~ylA 403 (514)
T KOG2055|consen 349 ---------------------DFTFSSDSKELLASGGTGEVYVWNLRQN---SCLHRFVDDG-SVHGTSLCISLNGSYLA 403 (514)
T ss_pred ---------------------eEEEecCCcEEEEEcCCceEEEEecCCc---ceEEEEeecC-ccceeeeeecCCCceEE
Confidence 4555667889999999999999999977 3334443321 12346788899999999
Q ss_pred EEeCCCeEEEEeCCC------CceeeeeeccCCCEEEEEEcCCCCcEEEEEeC--CCcEEEEeccceeeeeeeccccCCc
Q psy307 572 SGDADGKCYIWDWKT------TKLFKKWKAHDGVCISTLWHPHEPSKVVTAGW--DAATAKVQDANIVKIAVEMEKQVPQ 643 (1019)
Q Consensus 572 sgs~DG~I~IWDl~t------~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~--Dg~I~iwwd~~i~ki~~e~~~~v~q 643 (1019)
+|+..|.|.|||..+ .+++.++..-...|++++|+|+. .+|+.||. +..++++
T Consensus 404 ~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLV------------------ 464 (514)
T KOG2055|consen 404 TGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA-QILAIASRVKKNALRLV------------------ 464 (514)
T ss_pred eccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch-hhhhhhhhccccceEEE------------------
Confidence 999999999999764 35666666666789999999998 57777663 3344333
Q ss_pred eeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCchhh
Q psy307 644 LYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNASL 723 (1019)
Q Consensus 644 l~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~l 723 (1019)
++... .+|+. +.+. + -+-|.|+|++|||.+ -.++-|-..|.+.|
T Consensus 465 --HvPS~-----------------------TVFsN-----fP~~-n---~~vg~vtc~aFSP~s--G~lAvGNe~grv~l 508 (514)
T KOG2055|consen 465 --HVPSC-----------------------TVFSN-----FPTS-N---TKVGHVTCMAFSPNS--GYLAVGNEAGRVHL 508 (514)
T ss_pred --eccce-----------------------eeecc-----CCCC-C---CcccceEEEEecCCC--ceEEeecCCCceee
Confidence 11111 01110 1110 0 123578999999987 66777777899999
Q ss_pred HHH
Q psy307 724 EEK 726 (1019)
Q Consensus 724 w~~ 726 (1019)
|+.
T Consensus 509 ~kL 511 (514)
T KOG2055|consen 509 FKL 511 (514)
T ss_pred Eee
Confidence 863
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-17 Score=183.79 Aligned_cols=273 Identities=14% Similarity=0.171 Sum_probs=209.4
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCC-CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHT-KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~-~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
++.+.+.++.+-.|+.|-+|+....+. +..++.||. ..|.+++|++ +..|+|.+.+|.|.-||+ ...+..
T Consensus 33 ~s~kS~~lAvsRt~g~IEiwN~~~~w~------~~~vi~g~~drsIE~L~W~e--~~RLFS~g~sg~i~EwDl-~~lk~~ 103 (691)
T KOG2048|consen 33 YSHKSNQLAVSRTDGNIEIWNLSNNWF------LEPVIHGPEDRSIESLAWAE--GGRLFSSGLSGSITEWDL-HTLKQK 103 (691)
T ss_pred EeccCCceeeeccCCcEEEEccCCCce------eeEEEecCCCCceeeEEEcc--CCeEEeecCCceEEEEec-ccCcee
Confidence 455667799999999999999887553 344566664 6899999996 567899999999999999 666777
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe-EEEEEccccccEeEEEEecCCCEE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR-CVRTYYGHRQAVRDICFNNTGTNF 451 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~-~~~~l~~H~~~V~sl~fspdg~~l 451 (1019)
..+....++|.+++.+|.+ ..++.|+.||.+...+...+.- ....+....+.|.+++|+|++..+
T Consensus 104 ~~~d~~gg~IWsiai~p~~--------------~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i 169 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPEN--------------TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKI 169 (691)
T ss_pred EEecCCCcceeEEEeCCcc--------------ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEE
Confidence 7888888999999999988 6899999999777777633221 223445567899999999999999
Q ss_pred EEEEcCCeEEEEECCCCceEEEEecC-----CceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE
Q psy307 452 ISAGYDRYLKLWDTESGECISRFTSR-----KVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ 526 (1019)
Q Consensus 452 ~S~s~Dg~I~lWDl~t~~~i~~~~~~-----~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg 526 (1019)
++|+.||.|++||..++..+...+.. +.-.++ +.++.+-. ...|++|
T Consensus 170 ~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~i---------------------------VWSv~~Lr-d~tI~sg 221 (691)
T KOG2048|consen 170 AGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTI---------------------------VWSVLFLR-DSTIASG 221 (691)
T ss_pred EecccCceEEEEEcCCCceEEEeeecccccccCCceE---------------------------EEEEEEee-cCcEEEe
Confidence 99999999999999999877633211 111112 22344443 3478999
Q ss_pred ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce----eeeeeccCCCEEE
Q psy307 527 SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKL----FKKWKAHDGVCIS 602 (1019)
Q Consensus 527 s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~----l~~l~~h~~~V~s 602 (1019)
..-|+|.+||...+.. ++.+..|. +-|.+++..+++.++++++.|+.|..+...+.+. ......|...|.+
T Consensus 222 DS~G~V~FWd~~~gTL---iqS~~~h~--adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs 296 (691)
T KOG2048|consen 222 DSAGTVTFWDSIFGTL---IQSHSCHD--ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRS 296 (691)
T ss_pred cCCceEEEEcccCcch---hhhhhhhh--cceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCccccee
Confidence 9999999999988743 45566665 5699999999999999999999999998776643 2223467777888
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEE
Q psy307 603 TLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 603 l~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
++..++ .+++||.|+.+.+-
T Consensus 297 ~av~~~---~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 297 MAVIEN---ALISGGRDFTLAIC 316 (691)
T ss_pred eeeecc---eEEecceeeEEEEc
Confidence 888764 78999999887654
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-18 Score=178.69 Aligned_cols=294 Identities=16% Similarity=0.248 Sum_probs=197.7
Q ss_pred EeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEE
Q psy307 382 VRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLK 461 (1019)
Q Consensus 382 V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~ 461 (1019)
..|+.|++.| .+|++|+.||.|.|||+ .+...-+.+.+|..+|.+++||++|+.|+|+|.|..|.
T Consensus 26 a~~~~Fs~~G--------------~~lAvGc~nG~vvI~D~-~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~ 90 (405)
T KOG1273|consen 26 AECCQFSRWG--------------DYLAVGCANGRVVIYDF-DTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIK 90 (405)
T ss_pred cceEEeccCc--------------ceeeeeccCCcEEEEEc-cccchhhhhhccccceeEEEecCCCCEeeeecCCceeE
Confidence 6788899888 79999999999999999 55567788999999999999999999999999999999
Q ss_pred EEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcc
Q psy307 462 LWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRF 541 (1019)
Q Consensus 462 lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~ 541 (1019)
+||+..|.+++.+....++..+.|+|-....++.. ....+..-+.+++ +.-.+.-..+.
T Consensus 91 lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~---------~~~~sp~vi~~s~-----------~~h~~Lp~d~d- 149 (405)
T KOG1273|consen 91 LWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVAT---------IMEESPVVIDFSD-----------PKHSVLPKDDD- 149 (405)
T ss_pred EEeccCCCceeEEEccCccceeeeccccCCeEEEE---------EecCCcEEEEecC-----------CceeeccCCCc-
Confidence 99999999999999999999999998654222110 0001111111221 11111111110
Q ss_pred cccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccC-CCEEEEEEcCCCCcEEEEEeCCC
Q psy307 542 KLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHD-GVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 542 ~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~-~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
+.. .....+..|.+.|+|+++|...|.+.|+|..|.+++..++-.. ..|.++.++..| ..++.-+.|.
T Consensus 150 ---------~dl-n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g-~~liiNtsDR 218 (405)
T KOG1273|consen 150 ---------GDL-NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKG-RFLIINTSDR 218 (405)
T ss_pred ---------ccc-ccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccC-cEEEEecCCc
Confidence 000 0112234689999999999999999999999999999888665 688899999888 6899999999
Q ss_pred cEEEEeccceeeeeee-ccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccc----c-
Q psy307 621 ATAKVQDANIVKIAVE-MEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEI----K- 694 (1019)
Q Consensus 621 ~I~iwwd~~i~ki~~e-~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I----~- 694 (1019)
.|+.+--.++...... ......++..+-++... . .-.|++...|++.-+......|+.+++...+ |
T Consensus 219 vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W-----k---~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG 290 (405)
T KOG1273|consen 219 VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW-----K---KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG 290 (405)
T ss_pred eEEEEehhhhcccCccCCcChhHHHHHHHhhhhh-----h---heeecCCccEEEeccccceeEEEEecCCcceeeeecC
Confidence 8877644444322110 00111111111111110 0 1124444446555555455567777766654 3
Q ss_pred -C-CceEEEEecCCccHHHHHhhcCCCchhhHH--------HHHHhhhe
Q psy307 695 -N-GSVLRLAFSASKTADDILSKLSDKNASLEE--------KTAAEFYC 733 (1019)
Q Consensus 695 -n-g~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~--------~~~~e~~~ 733 (1019)
. -..+++.|+|-. . ++....+|++.+|. +||-+|--
T Consensus 291 ~kgE~l~DV~whp~r--p-~i~si~sg~v~iw~~~~~enwsafAPdFqe 336 (405)
T KOG1273|consen 291 TKGEELLDVNWHPVR--P-IIASIASGVVYIWAVVQVENWSAFAPDFQE 336 (405)
T ss_pred Cchhheeecccccce--e-eeeeccCCceEEEEeecccchhhcCchHHH
Confidence 2 346789999986 3 55555889999986 67755544
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-16 Score=174.94 Aligned_cols=292 Identities=14% Similarity=0.211 Sum_probs=205.8
Q ss_pred CCCCCeeeeC--CCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcE--
Q psy307 295 DYQGRSFLHP--PHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERR-- 370 (1019)
Q Consensus 295 ~~~gr~~~~~--~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~-- 370 (1019)
...|..+... +.+.-..+|++.... .....+.-...|....|+|.+..++++++ -|.+..|+...+.-
T Consensus 165 ~~~G~~l~~vD~s~~h~lSVWdWqk~~-------~~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k 236 (626)
T KOG2106|consen 165 INGGSLLCAVDDSNPHMLSVWDWQKKA-------KLGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVK 236 (626)
T ss_pred cCCCceEEEecCCCccccchhhchhhh-------ccCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEE
Confidence 3344444433 334556678776322 23334455678999999998777777776 58999999854432
Q ss_pred EEEEeccc-CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCC
Q psy307 371 CVRTYYGH-RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT 449 (1019)
Q Consensus 371 ~~~~~~gh-~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~ 449 (1019)
....+..+ .+-|.|++|.++|. +++|..+|.|.||+. .+.+..+....|.+.|.+++...+|.
T Consensus 237 ~~~~fek~ekk~Vl~v~F~engd---------------viTgDS~G~i~Iw~~-~~~~~~k~~~aH~ggv~~L~~lr~Gt 300 (626)
T KOG2106|consen 237 RQGIFEKREKKFVLCVTFLENGD---------------VITGDSGGNILIWSK-GTNRISKQVHAHDGGVFSLCMLRDGT 300 (626)
T ss_pred EeeccccccceEEEEEEEcCCCC---------------EEeecCCceEEEEeC-CCceEEeEeeecCCceEEEEEecCcc
Confidence 12233333 36799999999984 899999999999998 45555555559999999999999885
Q ss_pred EEEEEEcCCeEEEEECCCCceEEEEecC---CceEEEEEecCCCeeee----------ccCCCceeeeCCCCCcccEEEE
Q psy307 450 NFISAGYDRYLKLWDTESGECISRFTSR---KVAYCVKFHPDEDKQHL----------DIPVDMKYIADPTMHSMPAVTS 516 (1019)
Q Consensus 450 ~l~S~s~Dg~I~lWDl~t~~~i~~~~~~---~~v~~v~~~p~~~~~~~----------~~~~~~~~i~~~~~~~i~~v~~ 516 (1019)
|+||+.|+.|..||- .-+.++..+.+ ..+..++-.. ..+.+ .+..........|......++.
T Consensus 301 -llSGgKDRki~~Wd~-~y~k~r~~elPe~~G~iRtv~e~~--~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~ 376 (626)
T KOG2106|consen 301 -LLSGGKDRKIILWDD-NYRKLRETELPEQFGPIRTVAEGK--GDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT 376 (626)
T ss_pred -EeecCccceEEeccc-cccccccccCchhcCCeeEEecCC--CcEEEeeccceEEEeeecCCceEEEEecccceeeEEc
Confidence 666999999999993 32333333221 2333333221 11222 2233344455566778889999
Q ss_pred cCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc
Q psy307 517 SPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH 596 (1019)
Q Consensus 517 spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h 596 (1019)
+|+...+++++.|+.+++|+ ..+ +.-.+.+ ..++.|+.|+|.| .||.|+..|...+.|..+..++..-..
T Consensus 377 hps~~q~~T~gqdk~v~lW~-~~k--~~wt~~~-----~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d- 446 (626)
T KOG2106|consen 377 HPSKNQLLTCGQDKHVRLWN-DHK--LEWTKII-----EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD- 446 (626)
T ss_pred CCChhheeeccCcceEEEcc-CCc--eeEEEEe-----cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-
Confidence 99999999999999999999 221 1111111 1457789999999 999999999999999999666555444
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 597 DGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 597 ~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
..+++++.|+|+| .++|.|+.|+.|+++
T Consensus 447 ~~~ls~v~ysp~G-~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 447 NEQLSVVRYSPDG-AFLAVGSHDNHIYIY 474 (626)
T ss_pred CCceEEEEEcCCC-CEEEEecCCCeEEEE
Confidence 7899999999999 699999999999765
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-17 Score=171.36 Aligned_cols=247 Identities=17% Similarity=0.192 Sum_probs=182.4
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVR 373 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~ 373 (1019)
+++.+..++.+++|+.+++++..... ....-.|..++.+++|.++ ..+++|+.||.|+.+|+.... ..
T Consensus 21 f~~~~~~LLvssWDgslrlYdv~~~~--------l~~~~~~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~~--~~ 88 (323)
T KOG1036|consen 21 FSPSSSDLLVSSWDGSLRLYDVPANS--------LKLKFKHGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTGN--ED 88 (323)
T ss_pred EcCcCCcEEEEeccCcEEEEeccchh--------hhhheecCCceeeeeccCC--ceEEEeccCceEEEEEecCCc--ce
Confidence 34666777888899999999887542 2223358899999999884 679999999999999995543 34
Q ss_pred EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE
Q psy307 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS 453 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S 453 (1019)
.+..|..+|+||.+++.. ..+++||+|++|++||.+. ......+. ....|.++.. .|+.|+.
T Consensus 89 ~igth~~~i~ci~~~~~~--------------~~vIsgsWD~~ik~wD~R~-~~~~~~~d-~~kkVy~~~v--~g~~LvV 150 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEV--------------GCVISGSWDKTIKFWDPRN-KVVVGTFD-QGKKVYCMDV--SGNRLVV 150 (323)
T ss_pred eeccCCCceEEEEeeccC--------------CeEEEcccCccEEEEeccc-cccccccc-cCceEEEEec--cCCEEEE
Confidence 566799999999998755 5899999999999999954 22222222 2236777665 5788999
Q ss_pred EEcCCeEEEEECCCCceEEE---EecCCceEEEEEecCCCeeeeccCCC---------------ceeeeCCC--------
Q psy307 454 AGYDRYLKLWDTESGECISR---FTSRKVAYCVKFHPDEDKQHLDIPVD---------------MKYIADPT-------- 507 (1019)
Q Consensus 454 ~s~Dg~I~lWDl~t~~~i~~---~~~~~~v~~v~~~p~~~~~~~~~~~~---------------~~~i~~~~-------- 507 (1019)
|+.|..|.+||+++...... -...-.+.|+++.|++...++..-.+ .++...-|
T Consensus 151 g~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~ 230 (323)
T KOG1036|consen 151 GTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTE 230 (323)
T ss_pred eecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCce
Confidence 99999999999998754332 22345678999999766555411111 11111111
Q ss_pred -CCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC
Q psy307 508 -MHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA 575 (1019)
Q Consensus 508 -~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~ 575 (1019)
..+|.+++|||-...|++|+.||.|.+||+.++.++ ..+.... ..|.+++|+.||..||+++.
T Consensus 231 ~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl---~q~~~~~--~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 231 IIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL---KQLAKYE--TSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEEEeceeEeccccceEEecCCCceEEEccCcchhhh---hhccCCC--CceEEEEeccCCCeEEEEec
Confidence 246889999999999999999999999999988554 4443332 55899999999999999875
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=181.42 Aligned_cols=289 Identities=13% Similarity=0.136 Sum_probs=203.1
Q ss_pred CCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-EEEEE
Q psy307 296 YQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-RCVRT 374 (1019)
Q Consensus 296 ~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~~~~~ 374 (1019)
..-..++.|..-|.|-+|+...... -..-+..+..|.++|+++.|+|.+...+++.|.||+|++-|+.... ..+..
T Consensus 198 ~~~~lva~GdK~G~VG~Wn~~~~~~---d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s 274 (498)
T KOG4328|consen 198 ENRKLVAVGDKGGQVGLWNFGTQEK---DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLS 274 (498)
T ss_pred CcceEEEEccCCCcEEEEecCCCCC---ccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhh
Confidence 3346788888999999999852221 1244677899999999999999989999999999999999984321 11112
Q ss_pred ecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCE-EEE
Q psy307 375 YYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTN-FIS 453 (1019)
Q Consensus 375 ~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~-l~S 453 (1019)
+......+.++.|+.+. ..++.|..=|...+||++..+.....+.-|...|.+|+++|...+ |+|
T Consensus 275 ~~~d~~~fs~~d~~~e~--------------~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT 340 (498)
T KOG4328|consen 275 LDTDNIWFSSLDFSAES--------------RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLAT 340 (498)
T ss_pred cCccceeeeeccccCCC--------------ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheee
Confidence 22122334444444433 344555555599999999999888999999999999999997665 899
Q ss_pred EEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEE
Q psy307 454 AGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKIL 533 (1019)
Q Consensus 454 ~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~ 533 (1019)
+|.|++++|||++.-..... + .....+|...|.+..|||.+-.|++.+.|+.|+
T Consensus 341 ~s~D~T~kIWD~R~l~~K~s------p--------------------~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IR 394 (498)
T KOG4328|consen 341 ASLDQTAKIWDLRQLRGKAS------P--------------------FLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIR 394 (498)
T ss_pred cccCcceeeeehhhhcCCCC------c--------------------ceecccccceeeeeEEcCCCCceEeeccCCceE
Confidence 99999999999975332111 0 111234667788888999888899999999999
Q ss_pred EEEccC-cccccceeEEe-cccccc--ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCC-CEEEE-EEcC
Q psy307 534 IFSALN-RFKLNRKKTFE-GHMVAG--YACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDG-VCIST-LWHP 607 (1019)
Q Consensus 534 iwd~~~-~~~~~~~~~l~-gh~~~~--~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~-~V~sl-~~sp 607 (1019)
|||..- ........++. .+.... ......|.|+..++++|-.-..|-|+|-..++.+..+..... .|.++ .|||
T Consensus 395 v~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP 474 (498)
T KOG4328|consen 395 VFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHP 474 (498)
T ss_pred EeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecc
Confidence 999841 01111222222 111111 234568999999999999999999999998988887654333 45444 6999
Q ss_pred CCCcEEEEEeCCCcEEEEec
Q psy307 608 HEPSKVVTAGWDAATAKVQD 627 (1019)
Q Consensus 608 ~~~~~l~s~s~Dg~I~iwwd 627 (1019)
-+..+++.++..|.|.+|-+
T Consensus 475 ~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 475 MRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred cccceeccCCccceEEEEec
Confidence 88545555556667766543
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.2e-19 Score=209.21 Aligned_cols=244 Identities=19% Similarity=0.293 Sum_probs=191.9
Q ss_pred CeEEEEEcCCCCc---EEEEeeCCCeEEEEecCC-----CcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEE
Q psy307 337 GISAIRWFPKSAH---LLLSCSMDCRVKLWEVYK-----ERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 337 ~V~~i~fspd~g~---lLaSgs~Dg~I~IWdl~~-----~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L 408 (1019)
.-+.++|.+.+.+ +|+.|..||.|.+||... ....+.++..|++.|..+.|++... ++|
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~-------------nlL 132 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQG-------------NLL 132 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCC-------------cee
Confidence 5678999886544 599999999999999843 2245667888999999999998774 799
Q ss_pred EEEeCCCcEEEEEccCCCeEEEE-EccccccEeEEEEecCCC-EEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEe
Q psy307 409 LSCSMDCRVKLWEVYKEHRCVRT-YYGHRQAVRDICFNNTGT-NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFH 486 (1019)
Q Consensus 409 ~sgs~Dg~I~IWDl~~~~~~~~~-l~~H~~~V~sl~fspdg~-~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~ 486 (1019)
++|+.||.|.|||+.+....... -....+.|.+++|+..-. .|++++.+|++.|||++..+.+-.+.....
T Consensus 133 ASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~------- 205 (1049)
T KOG0307|consen 133 ASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPG------- 205 (1049)
T ss_pred eccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCC-------
Confidence 99999999999999664444333 223567899999987544 488899999999999998877655543322
Q ss_pred cCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC-CEEEEEecCC---eEEEEEccCcccccceeEEeccccccceEEEE
Q psy307 487 PDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN-KWLACQSMDN---KILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562 (1019)
Q Consensus 487 p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg-~~Lasgs~Dg---~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~ 562 (1019)
...+..++|+|++ ..|++++.|. .|.+||++... ...+.+.+|. ..|.++.
T Consensus 206 ---------------------~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP~k~~~~H~--~Gilsls 260 (1049)
T KOG0307|consen 206 ---------------------RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SPLKILEGHQ--RGILSLS 260 (1049)
T ss_pred ---------------------ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cchhhhcccc--cceeeec
Confidence 0112334445543 4455555544 79999998543 4567788888 5599999
Q ss_pred EcCCC-CEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 563 FSPDM-SYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 563 fspdg-~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
|++.+ .+|++++.|++|.+|+..+++.+..+......+..+.|+|..+..+++++.||.|-++
T Consensus 261 Wc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 261 WCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred cCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 99966 8999999999999999999999999998888999999999999999999999999775
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=180.81 Aligned_cols=229 Identities=17% Similarity=0.217 Sum_probs=171.4
Q ss_pred CcEEEEeeCCCeEEEEecCCCcE--EEE------------------EecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERR--CVR------------------TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~--~~~------------------~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
|+++|.|+.|..|.|||+.--.. +.. .-.+|+..|.++.|+-.-. ++
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~-------------nV 258 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR-------------NV 258 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc-------------ee
Confidence 67999999999999999842111 001 1236777787777765543 79
Q ss_pred EEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecC-CCEEEEEEcCCeEEEEECCCCc-eEEEEecCCceEEEEE
Q psy307 408 LLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT-GTNFISAGYDRYLKLWDTESGE-CISRFTSRKVAYCVKF 485 (1019)
Q Consensus 408 L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspd-g~~l~S~s~Dg~I~lWDl~t~~-~i~~~~~~~~v~~v~~ 485 (1019)
|+|||.|.+|++||+ ..+++..++..|.+.|.++.|+|. ...|++||+|++|.+.|.+... .-..+....
T Consensus 259 LaSgsaD~TV~lWD~-~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g------- 330 (463)
T KOG0270|consen 259 LASGSADKTVKLWDV-DTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDG------- 330 (463)
T ss_pred EEecCCCceEEEEEc-CCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEecc-------
Confidence 999999999999999 888999999999999999999996 4569999999999999998422 112222223
Q ss_pred ecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC-CCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEc
Q psy307 486 HPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN-NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564 (1019)
Q Consensus 486 ~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd-g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fs 564 (1019)
.|..++|.|. ...+++++.||+++-+|++... .++.++..|. +.|.+++++
T Consensus 331 ------------------------~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~--~~vwt~~AHd--~~ISgl~~n 382 (463)
T KOG0270|consen 331 ------------------------EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG--KPVWTLKAHD--DEISGLSVN 382 (463)
T ss_pred ------------------------ceEEEEecCCCceeEEEecCCceEEeeecCCCC--CceeEEEecc--CCcceEEec
Confidence 3444555554 3567888999999999999764 5567888887 779999998
Q ss_pred CCC-CEEEEEeCCCeEEEEeCCCCce--eeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 565 PDM-SYLISGDADGKCYIWDWKTTKL--FKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 565 pdg-~~Lasgs~DG~I~IWDl~t~~~--l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+.- .++++++.|+.|++|++..... +..-.---+...|.++.|+-..+++.||..+.+++|
T Consensus 383 ~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vw 446 (463)
T KOG0270|consen 383 IQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVW 446 (463)
T ss_pred CCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEe
Confidence 854 4788999999999999864332 222111123467788899988889999988866555
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-17 Score=177.70 Aligned_cols=235 Identities=17% Similarity=0.200 Sum_probs=180.7
Q ss_pred EEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEE
Q psy307 350 LLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCV 429 (1019)
Q Consensus 350 lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~ 429 (1019)
++++-..-..|.+|.+....+.. .+.--.++|.+++-+|+| .+|+.|+..|.|++|.+ .++.++
T Consensus 53 llsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~n~G--------------~~l~ag~i~g~lYlWel-ssG~LL 116 (476)
T KOG0646|consen 53 LLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASSNLG--------------YFLLAGTISGNLYLWEL-SSGILL 116 (476)
T ss_pred eeeecccCccccccccCchhhhh-hhcccccceeeeecCCCc--------------eEEEeecccCcEEEEEe-ccccHH
Confidence 34444456689999984433322 333456789999999999 68888889999999999 788888
Q ss_pred EEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCC
Q psy307 430 RTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMH 509 (1019)
Q Consensus 430 ~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~ 509 (1019)
..+.+|-..|+|+.|+.||.+|+|||.||.|.+|++.+- ++++.+ ........+..|.-
T Consensus 117 ~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l----------------v~a~~~-----~~~~p~~~f~~Htl 175 (476)
T KOG0646|consen 117 NVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL----------------VSADND-----HSVKPLHIFSDHTL 175 (476)
T ss_pred HHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee----------------cccccC-----CCccceeeeccCcc
Confidence 889999999999999999999999999999999986321 011110 01223344556677
Q ss_pred cccEEEEcCC--CCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy307 510 SMPAVTSSPN--NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTT 587 (1019)
Q Consensus 510 ~i~~v~~spd--g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~ 587 (1019)
+|+.+...+. ..+|++.|.|.++++||+..+. .+.++.-. ..+.+++.+|-++.+.+|+.+|.|.+.++...
T Consensus 176 sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~---LLlti~fp---~si~av~lDpae~~~yiGt~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 176 SITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV---LLLTITFP---SSIKAVALDPAERVVYIGTEEGKIFQNLLFKL 249 (476)
T ss_pred eeEEEEecCCCccceEEEecCCceEEEEEeccce---eeEEEecC---CcceeEEEcccccEEEecCCcceEEeeehhcC
Confidence 7887777655 4689999999999999998873 23333332 56899999999999999999999999887432
Q ss_pred ----------------ceeeeeeccCC--CEEEEEEcCCCCcEEEEEeCCCcEEEEeccc
Q psy307 588 ----------------KLFKKWKAHDG--VCISTLWHPHEPSKVVTAGWDAATAKVQDAN 629 (1019)
Q Consensus 588 ----------------~~l~~l~~h~~--~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~ 629 (1019)
..+..+.+|.+ .|+|++.+-|| .+|++|+.||.+++| |..
T Consensus 250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvW-di~ 307 (476)
T KOG0646|consen 250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVW-DIY 307 (476)
T ss_pred CcccccccccccccccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEE-ecc
Confidence 23566788988 99999999999 699999999999765 443
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.4e-17 Score=182.79 Aligned_cols=365 Identities=17% Similarity=0.213 Sum_probs=241.2
Q ss_pred CCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCc---EEEEeeCCCeEEEEecC-CCcEEEEEecccCcc
Q psy307 306 HDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAH---LLLSCSMDCRVKLWEVY-KERRCVRTYYGHRQA 381 (1019)
Q Consensus 306 ~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~---lLaSgs~Dg~I~IWdl~-~~~~~~~~~~gh~~~ 381 (1019)
....|.+|+.... ....++.||.++|+|+.|-|. .. .++||+.||.|++|.+. ....++.++.+|...
T Consensus 32 a~~~Iav~dp~k~-------~i~t~l~GH~a~VnC~~~l~~-s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~ 103 (764)
T KOG1063|consen 32 AGPAIAVADPEKI-------LIVTTLDGHVARVNCVHWLPT-SEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKE 103 (764)
T ss_pred CCceEEEeCcccc-------eeEEeccCCccceEEEEEccc-ccccceEEEccCCCcEEEEEEeehheEEEEeecCccee
Confidence 4466777765432 346789999999999999985 44 79999999999999996 445677788888776
Q ss_pred EeEEEEc--------CCCCcee-----------------------EEEeecCCCCc-EEEEEeCCCcEEEEEccC-CCeE
Q psy307 382 VRDICFN--------NTGTNFI-----------------------SAIRWFPKSAH-LLLSCSMDCRVKLWEVYK-EHRC 428 (1019)
Q Consensus 382 V~~i~fs--------pdg~~~v-----------------------s~i~~~p~~~~-~L~sgs~Dg~I~IWDl~~-~~~~ 428 (1019)
+.|+.-. .++...+ .|++..|+.+. +++.|+.+..|.++.-.. .-..
T Consensus 104 ~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~ 183 (764)
T KOG1063|consen 104 CVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFAR 183 (764)
T ss_pred EEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeE
Confidence 6654321 1111100 01122343333 455566666677775531 1256
Q ss_pred EEEEccccccEeEEEEecCCC---EEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeee----ccCCCce
Q psy307 429 VRTYYGHRQAVRDICFNNTGT---NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL----DIPVDMK 501 (1019)
Q Consensus 429 ~~~l~~H~~~V~sl~fspdg~---~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~----~~~~~~~ 501 (1019)
+..+.||.+.|.+++|...+. +++|+|.|..||||.+.-+.......... ....-++...... .......
T Consensus 184 v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~---~~t~~~~~~~f~~l~~i~~~is~e 260 (764)
T KOG1063|consen 184 VAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNERED---SLTTLSNLPVFMILEEIQYRISFE 260 (764)
T ss_pred EEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccc---ccccccCCceeeeeeeEEEEEehh
Confidence 778899999999999987654 68999999999999875443221111000 0000111111000 1111223
Q ss_pred eeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccc--cccceEEEEEcCCCCEEEEEeCCCeE
Q psy307 502 YIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHM--VAGYACSLDFSPDMSYLISGDADGKC 579 (1019)
Q Consensus 502 ~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~--~~~~V~~v~fspdg~~Lasgs~DG~I 579 (1019)
.+...|...|.++.|+|.+..|+++|.|.++.+|......-+..-..--|.. .++.....-|+|++..+++-+..|-.
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 4455788899999999999999999999999999876542222111111111 12446788999999999999999999
Q ss_pred EEEeCCC---CceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchh
Q psy307 580 YIWDWKT---TKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSI 656 (1019)
Q Consensus 580 ~IWDl~t---~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~ 656 (1019)
++|-.+. ......+.||-+.|.+++|+|.| .+++|+|.|.+-+++..-
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~w---------------------------- 391 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARW---------------------------- 391 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCC-CEEEEeccccceeeeccc----------------------------
Confidence 9998332 23455667999999999999998 499999999988765111
Q ss_pred hhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCchhhHH---HHHHhhhe
Q psy307 657 IQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNASLEE---KTAAEFYC 733 (1019)
Q Consensus 657 ~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~---~~~~e~~~ 733 (1019)
+.+. -|.+-.|-+||...+.|++|-+.. -+.++|+..+..|+++ .|..-+..
T Consensus 392 ----------------------g~q~-~wHEiaRPQiHGyDl~c~~~vn~~--~~FVSgAdEKVlRvF~aPk~fv~~l~~ 446 (764)
T KOG1063|consen 392 ----------------------GRQQ-EWHEIARPQIHGYDLTCLSFVNED--LQFVSGADEKVLRVFEAPKSFVKSLMA 446 (764)
T ss_pred ----------------------cccc-ceeeecccccccccceeeehccCC--ceeeecccceeeeeecCcHHHHHHHHH
Confidence 1111 255566666788888888888842 4577787777778887 55554444
Q ss_pred ee
Q psy307 734 IC 735 (1019)
Q Consensus 734 ~~ 735 (1019)
+|
T Consensus 447 i~ 448 (764)
T KOG1063|consen 447 IC 448 (764)
T ss_pred Hh
Confidence 44
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.6e-18 Score=188.57 Aligned_cols=247 Identities=19% Similarity=0.259 Sum_probs=186.2
Q ss_pred eeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecC-------CCcEEEEEecccCccEeEEEEcCCCCceeEEEeec
Q psy307 329 HTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVY-------KERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 329 ~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~-------~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
.++..|.+.|.+++|.| ....|++|+.||+|++|++. ...+.+.++.+|.++|.|+++.+.+
T Consensus 288 ~tl~s~~d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~---------- 356 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHP-SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNG---------- 356 (577)
T ss_pred eeeecchhhhhhhhcCC-CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCc----------
Confidence 38889999999999999 47789999999999999992 2336788999999999999999998
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCC---------CeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEE
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYKE---------HRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECIS 472 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~~---------~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~ 472 (1019)
+.+++|+.||+|+.|++... ......+.||.+.|+.+++|+....|++++.||++++|+...... .
T Consensus 357 ----~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~ 431 (577)
T KOG0642|consen 357 ----EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-C 431 (577)
T ss_pred ----eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-c
Confidence 79999999999999966321 234567889999999999999999999999999999999876655 2
Q ss_pred EEe---cCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEE
Q psy307 473 RFT---SRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTF 549 (1019)
Q Consensus 473 ~~~---~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l 549 (1019)
+|. .+..+.++.+-... ++....+.....+++.+.........+
T Consensus 432 ~f~~~~e~g~Plsvd~~ss~---------------------------------~a~~~~s~~~~~~~~~~~ev~s~~~~~ 478 (577)
T KOG0642|consen 432 TFGEPKEHGYPLSVDRTSSR---------------------------------PAHSLASFRFGYTSIDDMEVVSDLLIF 478 (577)
T ss_pred ccCCccccCCcceEeeccch---------------------------------hHhhhhhcccccccchhhhhhhheeec
Confidence 332 22333444332111 111111222222222221111112222
Q ss_pred eccc-----cccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEE
Q psy307 550 EGHM-----VAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAK 624 (1019)
Q Consensus 550 ~gh~-----~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~i 624 (1019)
.... ....+..+.++|.+.+.+++..|+.|+++|..++++++...+|...++++++.|.|+ +|++++.||.+.+
T Consensus 479 ~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l 557 (577)
T KOG0642|consen 479 ESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRL 557 (577)
T ss_pred cccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCc-eEEeecCCceeeh
Confidence 2111 113366788899999999999999999999999999999999999999999999995 9999999999977
Q ss_pred E
Q psy307 625 V 625 (1019)
Q Consensus 625 w 625 (1019)
|
T Consensus 558 ~ 558 (577)
T KOG0642|consen 558 W 558 (577)
T ss_pred h
Confidence 6
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.8e-17 Score=166.94 Aligned_cols=236 Identities=21% Similarity=0.290 Sum_probs=160.4
Q ss_pred EEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEE-EEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEE
Q psy307 396 SAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCV-RTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRF 474 (1019)
Q Consensus 396 s~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~ 474 (1019)
++++|+|....++++||.||+||+|++...+..+ .....|.++|.+++|+.||..+++|+.|+.+++||+.+++....-
T Consensus 31 S~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~ 110 (347)
T KOG0647|consen 31 SALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVA 110 (347)
T ss_pred heeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeee
Confidence 3333444334788899999999999997754433 456779999999999999999999999999999999999877776
Q ss_pred ecCCceEEEEEecCCCeeee---ccCCCceeeeCCCCCcccE-------EEEcCCCCEEEEEecCCeEEEEEccCccccc
Q psy307 475 TSRKVAYCVKFHPDEDKQHL---DIPVDMKYIADPTMHSMPA-------VTSSPNNKWLACQSMDNKILIFSALNRFKLN 544 (1019)
Q Consensus 475 ~~~~~v~~v~~~p~~~~~~~---~~~~~~~~i~~~~~~~i~~-------v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~ 544 (1019)
.+..++.++.|-+......+ ......++........+.. -+.+--..+++++..+..|.+|++.+....
T Consensus 111 ~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te- 189 (347)
T KOG0647|consen 111 AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTE- 189 (347)
T ss_pred ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcch-
Confidence 77778888888765542222 1111112211111111111 111223455666666777777777544211
Q ss_pred ceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeeeeeccCC---------CEEEEEEcCCCCcEE
Q psy307 545 RKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTT--KLFKKWKAHDG---------VCISTLWHPHEPSKV 613 (1019)
Q Consensus 545 ~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~--~~l~~l~~h~~---------~V~sl~~sp~~~~~l 613 (1019)
.+..... ..-.+.||+..+|..-.+.|+-+|++-|..+..+ +.-.+|+.|.. .|++++|||.- ..|
T Consensus 190 -~k~~~Sp-Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h-gtl 266 (347)
T KOG0647|consen 190 -FKRIESP-LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH-GTL 266 (347)
T ss_pred -hhhhcCc-ccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc-ceE
Confidence 1111111 1133778888888888899999999999999887 44556777762 58899999987 589
Q ss_pred EEEeCCCcEEEEeccceeeeeee
Q psy307 614 VTAGWDAATAKVQDANIVKIAVE 636 (1019)
Q Consensus 614 ~s~s~Dg~I~iwwd~~i~ki~~e 636 (1019)
+|+|.||++ .+||++....+..
T Consensus 267 vTaGsDGtf-~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 267 VTAGSDGTF-SFWDKDARTKLKT 288 (347)
T ss_pred EEecCCceE-EEecchhhhhhhc
Confidence 999999998 6678776544433
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-15 Score=168.95 Aligned_cols=227 Identities=15% Similarity=0.126 Sum_probs=160.3
Q ss_pred cEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeE
Q psy307 349 HLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRC 428 (1019)
Q Consensus 349 ~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~ 428 (1019)
.+++|++.|+.|++||+. +++++..+.++.. +.+++|+|++. .++++++.++.|++||+. .++.
T Consensus 2 ~~~~s~~~d~~v~~~d~~-t~~~~~~~~~~~~-~~~l~~~~dg~-------------~l~~~~~~~~~v~~~d~~-~~~~ 65 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTA-TLEVTRTFPVGQR-PRGITLSKDGK-------------LLYVCASDSDTIQVIDLA-TGEV 65 (300)
T ss_pred cEEEEecCCCEEEEEECC-CCceEEEEECCCC-CCceEECCCCC-------------EEEEEECCCCeEEEEECC-CCcE
Confidence 578899999999999994 4556777766543 67788888873 344677889999999984 4555
Q ss_pred EEEEccccccEeEEEEecCCCEEEEE-EcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCC
Q psy307 429 VRTYYGHRQAVRDICFNNTGTNFISA-GYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPT 507 (1019)
Q Consensus 429 ~~~l~~H~~~V~sl~fspdg~~l~S~-s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~ 507 (1019)
...+..+.. +..++|+|+++.++++ +.|+.|++||+.+++.+..+...
T Consensus 66 ~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~------------------------------ 114 (300)
T TIGR03866 66 IGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG------------------------------ 114 (300)
T ss_pred EEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC------------------------------
Confidence 555555433 5678999999977554 56899999999987766555322
Q ss_pred CCcccEEEEcCCCCEEEEEecCC-eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEE-EeCCCeEEEEeCC
Q psy307 508 MHSMPAVTSSPNNKWLACQSMDN-KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLIS-GDADGKCYIWDWK 585 (1019)
Q Consensus 508 ~~~i~~v~~spdg~~Lasgs~Dg-~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Las-gs~DG~I~IWDl~ 585 (1019)
..+..++++|+|+++++++.++ .+.+||..+.... ...... ..+.+++|+|+|++|+. +..+|.|++||+.
T Consensus 115 -~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~---~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~ 187 (300)
T TIGR03866 115 -VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV---DNVLVD---QRPRFAEFTADGKELWVSSEIGGTVSVIDVA 187 (300)
T ss_pred -CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE---EEEEcC---CCccEEEECCCCCEEEEEcCCCCEEEEEEcC
Confidence 1234578888999999888765 5677898765322 222111 23567899999998854 4569999999999
Q ss_pred CCceeeeeeccC-----C--CEEEEEEcCCCCcEEEEEeCCCcEEEEeccce
Q psy307 586 TTKLFKKWKAHD-----G--VCISTLWHPHEPSKVVTAGWDAATAKVQDANI 630 (1019)
Q Consensus 586 t~~~l~~l~~h~-----~--~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i 630 (1019)
+++.+..+..+. . ....++|+|++...+++.+.++.+.+| +...
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~-d~~~ 238 (300)
T TIGR03866 188 TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV-DAKT 238 (300)
T ss_pred cceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE-ECCC
Confidence 998877665331 1 235688999996545656667777655 4443
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-17 Score=178.83 Aligned_cols=249 Identities=17% Similarity=0.234 Sum_probs=181.8
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCC---ccCC-----------ccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCe
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDR---CFLP-----------KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCR 359 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~---~~lp-----------~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~ 359 (1019)
....|++++.|..|-.|-+|+..-... |+.- ++.-+.-.||+..|.+++|+....++|||||.|.+
T Consensus 188 ~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~T 267 (463)
T KOG0270|consen 188 SGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKT 267 (463)
T ss_pred CCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCce
Confidence 345688999999999999999863221 1110 01112345899999999999988999999999999
Q ss_pred EEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccE
Q psy307 360 VKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAV 439 (1019)
Q Consensus 360 I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V 439 (1019)
|++||+ ..++|..++..|.+.|.++.|+|.. +.+|++||.|++|.+.|.+.... ....-...+.|
T Consensus 268 V~lWD~-~~g~p~~s~~~~~k~Vq~l~wh~~~-------------p~~LLsGs~D~~V~l~D~R~~~~-s~~~wk~~g~V 332 (463)
T KOG0270|consen 268 VKLWDV-DTGKPKSSITHHGKKVQTLEWHPYE-------------PSVLLSGSYDGTVALKDCRDPSN-SGKEWKFDGEV 332 (463)
T ss_pred EEEEEc-CCCCcceehhhcCCceeEEEecCCC-------------ceEEEeccccceEEeeeccCccc-cCceEEeccce
Confidence 999999 6778899999999999888777655 48999999999999999964222 22222345778
Q ss_pred eEEEEecCCC-EEEEEEcCCeEEEEECCCC-ceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEc
Q psy307 440 RDICFNNTGT-NFISAGYDRYLKLWDTESG-ECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSS 517 (1019)
Q Consensus 440 ~sl~fspdg~-~l~S~s~Dg~I~lWDl~t~-~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~s 517 (1019)
-.++|.|... .|+++..||+|+-+|++.. +++.++..| ...|.+++++
T Consensus 333 Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AH------------------------------d~~ISgl~~n 382 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAH------------------------------DDEISGLSVN 382 (463)
T ss_pred EEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEec------------------------------cCCcceEEec
Confidence 8899998765 4788889999999999875 666666543 2345555555
Q ss_pred CC-CCEEEEEecCCeEEEEEccCcccccceeEEeccc-cccceEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceee
Q psy307 518 PN-NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHM-VAGYACSLDFSPDMS-YLISGDADGKCYIWDWKTTKLFK 591 (1019)
Q Consensus 518 pd-g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~-~~~~V~~v~fspdg~-~Lasgs~DG~I~IWDl~t~~~l~ 591 (1019)
+. -.++++++.|+.|++|++...... ....|. .-+...|.++.|+-. +++.|+..+.++|||+.+...+.
T Consensus 383 ~~~p~~l~t~s~d~~Vklw~~~~~~~~----~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 383 IQTPGLLSTASTDKVVKLWKFDVDSPK----SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred CCCCcceeeccccceEEEEeecCCCCc----ccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 43 356889999999999998754221 111111 113366777778654 57778888899999998876543
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-16 Score=165.50 Aligned_cols=246 Identities=17% Similarity=0.293 Sum_probs=178.4
Q ss_pred CCCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEE-cCCCCcEEEEeeCCCeEEEEecCC---
Q psy307 292 DPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRW-FPKSAHLLLSCSMDCRVKLWEVYK--- 367 (1019)
Q Consensus 292 ~~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~f-spd~g~lLaSgs~Dg~I~IWdl~~--- 367 (1019)
..+|+.||++++++.|.++++|+...... .-.+-..++.|.+.|..|.| +|.-|+.+|++|.|+++.||.=..
T Consensus 19 Vs~D~~GRRmAtCSsDq~vkI~d~~~~s~---~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~ 95 (361)
T KOG2445|consen 19 VSFDFYGRRMATCSSDQTVKIWDSTSDSG---TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE 95 (361)
T ss_pred eeecccCceeeeccCCCcEEEEeccCCCC---ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc
Confidence 46899999999999999999999543222 23466789999999999999 456799999999999999997411
Q ss_pred -----CcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeE-----EEEE-----
Q psy307 368 -----ERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRC-----VRTY----- 432 (1019)
Q Consensus 368 -----~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~-----~~~l----- 432 (1019)
......++......|+++.|.|... +-.|++++.||.++||+......+ ...+
T Consensus 96 ~~~~~~Wv~~ttl~DsrssV~DV~FaP~hl------------GLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 96 EAHGRRWVRRTTLVDSRSSVTDVKFAPKHL------------GLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred ccccceeEEEEEeecCCcceeEEEecchhc------------ceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 1122345666677788888887542 247899999999999997443321 1122
Q ss_pred --ccccccEeEEEEecC---CCEEEEEEcC-----CeEEEEECCCCc--eE--EEEecCCceEEEEEecCCCeeeeccCC
Q psy307 433 --YGHRQAVRDICFNNT---GTNFISAGYD-----RYLKLWDTESGE--CI--SRFTSRKVAYCVKFHPDEDKQHLDIPV 498 (1019)
Q Consensus 433 --~~H~~~V~sl~fspd---g~~l~S~s~D-----g~I~lWDl~t~~--~i--~~~~~~~~v~~v~~~p~~~~~~~~~~~ 498 (1019)
..+.....|+.|+|. ..+|+.|+.+ +.++||....+. .. .++.
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~----------------------- 220 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP----------------------- 220 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-----------------------
Confidence 246778899999974 3457777655 378888654332 11 1111
Q ss_pred CceeeeCCCCCcccEEEEcCC----CCEEEEEecCCeEEEEEccCc-----------------ccccceeEEeccccccc
Q psy307 499 DMKYIADPTMHSMPAVTSSPN----NKWLACQSMDNKILIFSALNR-----------------FKLNRKKTFEGHMVAGY 557 (1019)
Q Consensus 499 ~~~~i~~~~~~~i~~v~~spd----g~~Lasgs~Dg~I~iwd~~~~-----------------~~~~~~~~l~gh~~~~~ 557 (1019)
.+..+|+.++|.|+ ...||+++.|| |+||.+... ..+..+..+.+|. +.
T Consensus 221 -------d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~--~~ 290 (361)
T KOG2445|consen 221 -------DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHN--GE 290 (361)
T ss_pred -------CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCC--Cc
Confidence 23345556666654 36899999999 999998731 2234455677887 78
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy307 558 ACSLDFSPDMSYLISGDADGKCYIWDWK 585 (1019)
Q Consensus 558 V~~v~fspdg~~Lasgs~DG~I~IWDl~ 585 (1019)
|..+.|.-.|..|++.+.||+|++|...
T Consensus 291 VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 291 VWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999999999999999999999999753
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.7e-17 Score=172.15 Aligned_cols=296 Identities=18% Similarity=0.249 Sum_probs=208.0
Q ss_pred eeeeCCCCCceeeecCCCCCCcc--CCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecC--------C--
Q psy307 300 SFLHPPHDVGTNLRSDTPPDRCF--LPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVY--------K-- 367 (1019)
Q Consensus 300 ~~~~~~~D~~v~lw~~~~~~~~~--lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~--------~-- 367 (1019)
.+++++.|..|++|......... .....+..|..|...|++|.|+|+ |.+|+||+.+|.|.+|... .
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~-gelLASg~D~g~v~lWk~~~~~~~~~d~e~ 106 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD-GELLASGGDGGEVFLWKQGDVRIFDADTEA 106 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC-cCeeeecCCCceEEEEEecCcCCccccchh
Confidence 78999999999999875433221 334567889999999999999995 8999999999999999764 1
Q ss_pred -----CcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEE
Q psy307 368 -----ERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDI 442 (1019)
Q Consensus 368 -----~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl 442 (1019)
.......+.+|...|.+++|+|++ .++++|+.|..+++||+ ..+.....+..|...|..+
T Consensus 107 ~~~ke~w~v~k~lr~h~~diydL~Ws~d~--------------~~l~s~s~dns~~l~Dv-~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 107 DLNKEKWVVKKVLRGHRDDIYDLAWSPDS--------------NFLVSGSVDNSVRLWDV-HAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred hhCccceEEEEEecccccchhhhhccCCC--------------ceeeeeeccceEEEEEe-ccceeEeecccccccccee
Confidence 123456678899999999999999 79999999999999999 8889999999999999999
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCC-CCcccEEEEcCCCC
Q psy307 443 CFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPT-MHSMPAVTSSPNNK 521 (1019)
Q Consensus 443 ~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~-~~~i~~v~~spdg~ 521 (1019)
+|.|-++++++-+.|+..+..++...+.+....... ...-.+++.... ..+...+.. ..-...++|+|+|.
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~-m~~~~~~~~e~~-------s~rLfhDeTlksFFrRlsfTPdG~ 243 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDI-MPAKAFNEREGK-------STRLFHDETLKSFFRRLSFTPDGS 243 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeE-eeecccCCCCcc-------eeeeeecCchhhhhhhcccCCCCc
Confidence 999999999999999988888876655544433210 011111111000 001111111 11234678899999
Q ss_pred EEEEEec----C-----CeEEEEEccCcccccceeEEeccccccceEEEEEcC------------------CCCEEEEEe
Q psy307 522 WLACQSM----D-----NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP------------------DMSYLISGD 574 (1019)
Q Consensus 522 ~Lasgs~----D-----g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp------------------dg~~Lasgs 574 (1019)
++++.+. + +..++|+-.... .+...+.+.. .++..+.|+| -+-.+|.++
T Consensus 244 llvtPag~~~~g~~~~~n~tYvfsrk~l~--rP~~~lp~~~--k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt 319 (434)
T KOG1009|consen 244 LLVTPAGLFKVGGGVFRNTSYVFSRKDLK--RPAARLPSPK--KPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT 319 (434)
T ss_pred EEEcccceeeeCCceeeceeEeecccccc--CceeecCCCC--cceEEEEeeeeEEEeccccccccccccccceEEEEee
Confidence 9887642 2 233455433221 1122222222 2344444444 223455555
Q ss_pred CCCeEEEEeCCCCceeeeee-ccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 575 ADGKCYIWDWKTTKLFKKWK-AHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 575 ~DG~I~IWDl~t~~~l~~l~-~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.+ .|+|||.++..++.... -|-..++.++|+++| +.++..|.||-.-.+
T Consensus 320 ~~-svyvydtq~~~P~~~v~nihy~~iTDiaws~dg-~~l~vSS~DGyCS~v 369 (434)
T KOG1009|consen 320 KN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDG-SVLLVSSTDGFCSLV 369 (434)
T ss_pred cc-eEEEeccccccceEEEeeeeeeeecceeecCCC-cEEEEeccCCceEEE
Confidence 54 79999999988877664 588899999999998 688899999976553
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.3e-17 Score=177.25 Aligned_cols=249 Identities=17% Similarity=0.231 Sum_probs=185.7
Q ss_pred eCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccE
Q psy307 303 HPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAV 382 (1019)
Q Consensus 303 ~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V 382 (1019)
..+.|..+++|...++ ...+ ..+..+.|. .-.|++.... ..++++|+..+.|+|||+. ...+.+.+++|...|
T Consensus 52 s~~gdk~~~~~~K~g~-~~~V--p~~~k~~gd--~~~Cv~~~s~-S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stv 124 (673)
T KOG4378|consen 52 SMAGDKVMRIKEKDGK-TPEV--PRVRKLTGD--NAFCVACASQ-SLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTV 124 (673)
T ss_pred ecCCceeEEEecccCC-CCcc--ceeeccccc--hHHHHhhhhc-ceeeeccCcCceeeehhhH-HHHHhhhccCCccee
Confidence 3445778888876654 1111 223334443 3344444442 4789999999999999994 667788899999999
Q ss_pred eEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEc-cccccEeEEEEecCCCE-EEEEEcCCeE
Q psy307 383 RDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYY-GHRQAVRDICFNNTGTN-FISAGYDRYL 460 (1019)
Q Consensus 383 ~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~-~H~~~V~sl~fspdg~~-l~S~s~Dg~I 460 (1019)
+++.++... .+|++++..|.|.|..+.+..+ ...+. +....|.-+.|++..+. |.+++++|.|
T Consensus 125 t~v~YN~~D--------------eyiAsvs~gGdiiih~~~t~~~-tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~V 189 (673)
T KOG4378|consen 125 TYVDYNNTD--------------EYIASVSDGGDIIIHGTKTKQK-TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAV 189 (673)
T ss_pred EEEEecCCc--------------ceeEEeccCCcEEEEecccCcc-ccceecCCCCeEEEeecccccceeeEeeccCCeE
Confidence 999998776 6999999999999999844333 33333 33456778999998776 6688999999
Q ss_pred EEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC-CCEEEEEecCCeEEEEEccC
Q psy307 461 KLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN-NKWLACQSMDNKILIFSALN 539 (1019)
Q Consensus 461 ~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd-g~~Lasgs~Dg~I~iwd~~~ 539 (1019)
.+||+....++..+. ..|..+...+||+|. ..+|++.+.|..|.+||...
T Consensus 190 tlwDv~g~sp~~~~~-----------------------------~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 190 TLWDVQGMSPIFHAS-----------------------------EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred EEEeccCCCcccchh-----------------------------hhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence 999998766554332 223344556777775 46778889999999999986
Q ss_pred cccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeeeeeccCCCEEEEEEcCC
Q psy307 540 RFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTT-KLFKKWKAHDGVCISTLWHPH 608 (1019)
Q Consensus 540 ~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~-~~l~~l~~h~~~V~sl~~sp~ 608 (1019)
.... ..+... .+...++|+++|.+|+.|+..|.|..||++.. .++.++.+|...|++++|-|.
T Consensus 241 ~~s~---~~l~y~---~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 241 QAST---DRLTYS---HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred cccc---ceeeec---CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 5322 333222 45889999999999999999999999999864 678899999999999999885
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=170.11 Aligned_cols=233 Identities=18% Similarity=0.269 Sum_probs=172.5
Q ss_pred eeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc------EEEEEecccCccEeEEEEcCCCCceeEEEeecCC
Q psy307 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER------RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPK 403 (1019)
Q Consensus 330 ~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~------~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~ 403 (1019)
.+.||+++|..++|+|-+.+.|||||.|.+|.||.+..++ +.+..+.||...|.-++|+|.-
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA------------ 143 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA------------ 143 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc------------
Confidence 5789999999999999989999999999999999985432 4466778888888777666654
Q ss_pred CCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEE
Q psy307 404 SAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCV 483 (1019)
Q Consensus 404 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v 483 (1019)
.+.|++++.|.+|.+|++ .++..+.++. |...|.+++|+.+|.+|++++.|+.|+|||.++++.+..-..+..
T Consensus 144 -~NVLlsag~Dn~v~iWnv-~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG---- 216 (472)
T KOG0303|consen 144 -PNVLLSAGSDNTVSIWNV-GTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG---- 216 (472)
T ss_pred -hhhHhhccCCceEEEEec-cCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccC----
Confidence 489999999999999999 4455455555 999999999999999999999999999999999998776533321
Q ss_pred EEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE---ecCCeEEEEEccCcccccceeEEeccccccceEE
Q psy307 484 KFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ---SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560 (1019)
Q Consensus 484 ~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg---s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~ 560 (1019)
..-..+.|-.+|..+-+| ..+.++.+||..+-........+... ..|.-
T Consensus 217 -------------------------~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS---nGvl~ 268 (472)
T KOG0303|consen 217 -------------------------AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTS---NGVLL 268 (472)
T ss_pred -------------------------CCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccC---CceEE
Confidence 112234455567755444 35779999998765444334444433 34666
Q ss_pred EEEcCCCCEEE-EEeCCCeEEEEeCCCCce-eeeeec--cCCCEEEEEEcCCC
Q psy307 561 LDFSPDMSYLI-SGDADGKCYIWDWKTTKL-FKKWKA--HDGVCISTLWHPHE 609 (1019)
Q Consensus 561 v~fspdg~~La-sgs~DG~I~IWDl~t~~~-l~~l~~--h~~~V~sl~~sp~~ 609 (1019)
.-|.+|.+.|+ +|-.||.|+-|.+....+ ++-+.. ...+-.++.+-|..
T Consensus 269 PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 269 PFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred eeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccc
Confidence 77888888765 566899999999987654 222221 12344567777754
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.9e-17 Score=182.36 Aligned_cols=241 Identities=19% Similarity=0.301 Sum_probs=198.3
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCC--CCcEEEEeeCCCeEEEEecCCCcEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPK--SAHLLLSCSMDCRVKLWEVYKERRC 371 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd--~g~lLaSgs~Dg~I~IWdl~~~~~~ 371 (1019)
.+++|..+++|..-|.+++++.... .....+..|...|.|+.|+.. +..+||+++.|..|.|+|+..+-.+
T Consensus 467 vSp~gqhLAsGDr~GnlrVy~Lq~l-------~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l 539 (1080)
T KOG1408|consen 467 VSPDGQHLASGDRGGNLRVYDLQEL-------EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL 539 (1080)
T ss_pred ECCCcceecccCccCceEEEEehhh-------hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch
Confidence 4678999999999999999987643 345678899999999999864 4578999999999999999888888
Q ss_pred EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccc-----cccEeEEEEec
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGH-----RQAVRDICFNN 446 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H-----~~~V~sl~fsp 446 (1019)
+.++.+|...|+++.|...|- +..+++++.|..|..--....+. ...+..| ...+..++..|
T Consensus 540 ~qtld~HSssITsvKFa~~gl------------n~~MiscGADksimFr~~qk~~~-g~~f~r~t~t~~ktTlYDm~Vdp 606 (1080)
T KOG1408|consen 540 VQTLDGHSSSITSVKFACNGL------------NRKMISCGADKSIMFRVNQKASS-GRLFPRHTQTLSKTTLYDMAVDP 606 (1080)
T ss_pred hhhhcccccceeEEEEeecCC------------ceEEEeccCchhhheehhccccC-ceeccccccccccceEEEeeeCC
Confidence 999999999999999987762 24688888888776543322221 2222222 35688999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE
Q psy307 447 TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ 526 (1019)
Q Consensus 447 dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg 526 (1019)
..+++++++.|+.|+|||++.|+..+.|.... .+.+..-.+...|.|.||++.
T Consensus 607 ~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~---------------------------~~eG~lIKv~lDPSgiY~atS 659 (1080)
T KOG1408|consen 607 TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSR---------------------------DHEGDLIKVILDPSGIYLATS 659 (1080)
T ss_pred CcceEEEEecccceEEEeccccceeeeecccc---------------------------cCCCceEEEEECCCccEEEEe
Confidence 99999999999999999999999999887532 122344567788999999999
Q ss_pred ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy307 527 SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKT 586 (1019)
Q Consensus 527 s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t 586 (1019)
+.|.++.++|..++ ++.....||. ..|+.+.|++|.++|++.+.||.|.||.+..
T Consensus 660 csdktl~~~Df~sg---EcvA~m~GHs--E~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 660 CSDKTLCFVDFVSG---ECVAQMTGHS--EAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ecCCceEEEEeccc---hhhhhhcCcc--hheeeeeecccchhheeecCCceEEEEECch
Confidence 99999999999988 5667888997 6699999999999999999999999999865
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.3e-15 Score=167.56 Aligned_cols=282 Identities=28% Similarity=0.452 Sum_probs=214.9
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCC-CeEEEEE-cCCCCcEEEEee-CCCeEEEEecCCCc
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTK-GISAIRW-FPKSAHLLLSCS-MDCRVKLWEVYKER 369 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~-~V~~i~f-spd~g~lLaSgs-~Dg~I~IWdl~~~~ 369 (1019)
.+...+..+..++.|+.+.+|+..... ..+..+.++.. .+..+.+ +++...+++..+ .|+.+.+|++....
T Consensus 72 ~~~~~~~~~~~~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 145 (466)
T COG2319 72 AFSPDGELLLSGSSDGTIKLWDLDNGE------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG 145 (466)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCCCc------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCC
Confidence 346677888888899999999877443 35666777544 7888877 776443555544 49999999995436
Q ss_pred EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC-CCcEEEEEccCCCeEEEEEccccccEeEEEEecCC
Q psy307 370 RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM-DCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTG 448 (1019)
Q Consensus 370 ~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~-Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg 448 (1019)
.....+.+|...|.++.|+|++ ..+++++. |+.+++|++ .....+..+.+|...|.+++|+|++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~ 210 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDG--------------KLLASGSSLDGTIKLWDL-RTGKPLSTLAGHTDPVSSLAFSPDG 210 (466)
T ss_pred eEEEEEecCcccEEEEEECCCC--------------CEEEecCCCCCceEEEEc-CCCceEEeeccCCCceEEEEEcCCc
Confidence 7788899999999999999998 46777775 999999999 4477888888899999999999999
Q ss_pred C-EEEEEEcCCeEEEEECCCCceEEE-EecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE
Q psy307 449 T-NFISAGYDRYLKLWDTESGECISR-FTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ 526 (1019)
Q Consensus 449 ~-~l~S~s~Dg~I~lWDl~t~~~i~~-~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg 526 (1019)
. .+++++.|+.|++||...+..+.. +..+. ... ...|+|++.+++++
T Consensus 211 ~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~------------------------------~~~-~~~~~~~~~~~~~~ 259 (466)
T COG2319 211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS------------------------------DSV-VSSFSPDGSLLASG 259 (466)
T ss_pred ceEEEEecCCCcEEEEECCCCcEEeeecCCCC------------------------------cce-eEeECCCCCEEEEe
Confidence 8 566669999999999887666552 32221 111 11678888888999
Q ss_pred ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee--ccCCCEEEEE
Q psy307 527 SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK--AHDGVCISTL 604 (1019)
Q Consensus 527 s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~--~h~~~V~sl~ 604 (1019)
+.|+.+++|++..... ....+.+|. ..+.++.|+|++..+++++.|+.+.+||..+........ .|...+..+.
T Consensus 260 ~~d~~~~~~~~~~~~~--~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (466)
T COG2319 260 SSDGTIRLWDLRSSSS--LLRTLSGHS--SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335 (466)
T ss_pred cCCCcEEEeeecCCCc--EEEEEecCC--ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEE
Confidence 9999999999986643 123334553 779999999999998889999999999999888777766 8888899999
Q ss_pred EcCCCCcEEEEE-eCCCcEEEEeccceee
Q psy307 605 WHPHEPSKVVTA-GWDAATAKVQDANIVK 632 (1019)
Q Consensus 605 ~sp~~~~~l~s~-s~Dg~I~iwwd~~i~k 632 (1019)
|.+++ ..++.+ ..|+.+.. |+.....
T Consensus 336 ~~~~~-~~~~~~~~~d~~~~~-~~~~~~~ 362 (466)
T COG2319 336 FSPDG-SLLVSGGSDDGTIRL-WDLRTGK 362 (466)
T ss_pred ECCCC-CEEEEeecCCCcEEe-eecCCCc
Confidence 94332 344444 68888877 6665544
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-16 Score=174.68 Aligned_cols=273 Identities=18% Similarity=0.275 Sum_probs=199.4
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC-----
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE----- 368 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~----- 368 (1019)
.++.|..+++|+.||+|++|... .+.++.++.- .+.|.||+|+|.....++..+..+.+.|-+..-+
T Consensus 408 vdp~G~wlasGsdDGtvriWEi~-------TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~ 479 (733)
T KOG0650|consen 408 VDPSGEWLASGSDDGTVRIWEIA-------TGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEV 479 (733)
T ss_pred ecCCcceeeecCCCCcEEEEEee-------cceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCccccchhhh
Confidence 57799999999999999999876 3456666653 3489999999975554554444444444432100
Q ss_pred -------------------------------cEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC---
Q psy307 369 -------------------------------RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD--- 414 (1019)
Q Consensus 369 -------------------------------~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D--- 414 (1019)
..-++....|.+.|+.+.|+..| .+|++...+
T Consensus 480 ~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG--------------DYlatV~~~~~~ 545 (733)
T KOG0650|consen 480 GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG--------------DYLATVMPDSGN 545 (733)
T ss_pred cchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC--------------ceEEEeccCCCc
Confidence 01123344566777777777777 566666554
Q ss_pred CcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeee
Q psy307 415 CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL 494 (1019)
Q Consensus 415 g~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~ 494 (1019)
..|.|+++. .......+....+.|.++.|+|...+|+.++ ...|+|||+.....+..+...
T Consensus 546 ~~VliHQLS-K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg----------------- 606 (733)
T KOG0650|consen 546 KSVLIHQLS-KRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTG----------------- 606 (733)
T ss_pred ceEEEEecc-cccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcC-----------------
Confidence 568888883 3333455666678899999999999888776 478999999776554443321
Q ss_pred ccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe
Q psy307 495 DIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD 574 (1019)
Q Consensus 495 ~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs 574 (1019)
...+..++++|.|..|++|+.|+.+..||+.-.. ...+++..|. ..+.+++|++.-.++++|+
T Consensus 607 -------------~kwiS~msihp~GDnli~gs~d~k~~WfDldlss--kPyk~lr~H~--~avr~Va~H~ryPLfas~s 669 (733)
T KOG0650|consen 607 -------------SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS--KPYKTLRLHE--KAVRSVAFHKRYPLFASGS 669 (733)
T ss_pred -------------CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc--chhHHhhhhh--hhhhhhhhccccceeeeec
Confidence 1335567888999999999999999999997543 3456777777 5589999999999999999
Q ss_pred CCCeEEEEeC------CCC---ceeeeeeccCCC----EEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 575 ADGKCYIWDW------KTT---KLFKKWKAHDGV----CISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 575 ~DG~I~IWDl------~t~---~~l~~l~~h~~~----V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.||++.|+.- -.. -+++.+++|... |..+.|||..+ +|+++|.||+|++|
T Consensus 670 dDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qp-WLfsAGAd~tirlf 732 (733)
T KOG0650|consen 670 DDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP-WLFSAGADGTIRLF 732 (733)
T ss_pred CCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCc-eEEecCCCceEEee
Confidence 9999999853 222 246677888754 89999999985 99999999999876
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.5e-16 Score=159.03 Aligned_cols=247 Identities=15% Similarity=0.272 Sum_probs=183.2
Q ss_pred eeeccCCCCeEEEEEcCCCCcEEEEeeCC-------CeEEEEecCCCc--------EEEEEec-ccCccEeEEEEcCCCC
Q psy307 329 HTWEGHTKGISAIRWFPKSAHLLLSCSMD-------CRVKLWEVYKER--------RCVRTYY-GHRQAVRDICFNNTGT 392 (1019)
Q Consensus 329 ~~l~gH~~~V~~i~fspd~g~lLaSgs~D-------g~I~IWdl~~~~--------~~~~~~~-gh~~~V~~i~fspdg~ 392 (1019)
.+|..|.+.|..++-+|.+..+|+|+..| ..+-||.+.... +++..+. .+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 46778999999999999888888887653 346799885432 2233333 3455778888887763
Q ss_pred ceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEE-----ccccccEeEEEEec--CCCEEEEEEcCCeEEEEEC
Q psy307 393 NFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY-----YGHRQAVRDICFNN--TGTNFISAGYDRYLKLWDT 465 (1019)
Q Consensus 393 ~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l-----~~H~~~V~sl~fsp--dg~~l~S~s~Dg~I~lWDl 465 (1019)
.+++-. |..|.+|++....+.+..+ .+|....++-+|+| +|+.+++. .|+++..||+
T Consensus 137 --------------klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~ 200 (370)
T KOG1007|consen 137 --------------KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDL 200 (370)
T ss_pred --------------eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEc
Confidence 444433 8999999997666644443 23566778889998 66667665 6899999999
Q ss_pred CCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC-CEEEEEecCCeEEEEEccCccccc
Q psy307 466 ESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN-KWLACQSMDNKILIFSALNRFKLN 544 (1019)
Q Consensus 466 ~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg-~~Lasgs~Dg~I~iwd~~~~~~~~ 544 (1019)
++..+...+. +.|...+..+.|+|+- .+|++|+.||.|++||++... .
T Consensus 201 RT~~~~~sI~-----------------------------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--~ 249 (370)
T KOG1007|consen 201 RTMKKNNSIE-----------------------------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--F 249 (370)
T ss_pred cchhhhcchh-----------------------------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--c
Confidence 9877655443 2334445556666654 467889999999999998643 4
Q ss_pred ceeEEeccccccceEEEEEcCC-CCEEEEEeCCCeEEEEeCCCC-----------------------------ceeeeee
Q psy307 545 RKKTFEGHMVAGYACSLDFSPD-MSYLISGDADGKCYIWDWKTT-----------------------------KLFKKWK 594 (1019)
Q Consensus 545 ~~~~l~gh~~~~~V~~v~fspd-g~~Lasgs~DG~I~IWDl~t~-----------------------------~~l~~l~ 594 (1019)
.++.+.+|. .+|.++.|.|- .++|++|+.|..|.+|...+- -.+.++.
T Consensus 250 pv~el~~Hs--HWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd 327 (370)
T KOG1007|consen 250 PVQELPGHS--HWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD 327 (370)
T ss_pred cccccCCCc--eEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccc
Confidence 567888887 88999999994 567889999999999975321 1244677
Q ss_pred ccCCCEEEEEEcCCCCcEEEEEeCCCcEEE
Q psy307 595 AHDGVCISTLWHPHEPSKVVTAGWDAATAK 624 (1019)
Q Consensus 595 ~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~i 624 (1019)
.|...|.+++|+..++.++++-+.||++++
T Consensus 328 ehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 328 EHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred ccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 799999999999999999999999999865
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-15 Score=158.66 Aligned_cols=277 Identities=16% Similarity=0.245 Sum_probs=199.4
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCc-----cCCccceeeeccC-CCCeEEEEEcC------CCCcEEEEeeCCCeE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRC-----FLPKTQVHTWEGH-TKGISAIRWFP------KSAHLLLSCSMDCRV 360 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~-----~lp~~~i~~l~gH-~~~V~~i~fsp------d~g~lLaSgs~Dg~I 360 (1019)
.++++|..+++..+|...++|+.+..... .++.+..-+++-- ...|...+|.+ .+..++++.+.|.-|
T Consensus 56 kWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PI 135 (406)
T KOG2919|consen 56 KWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPI 135 (406)
T ss_pred eeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCce
Confidence 57999999999999999999988643211 1111222222221 24577788862 136789999999999
Q ss_pred EEEecCCCcEEEEEecc--cC---ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEE--EE-
Q psy307 361 KLWEVYKERRCVRTYYG--HR---QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVR--TY- 432 (1019)
Q Consensus 361 ~IWdl~~~~~~~~~~~g--h~---~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~--~l- 432 (1019)
++||.. +++....+.+ |. .+..+++|+|||. .|+ ++...+|+++|+...++... ..
T Consensus 136 h~wdaf-tG~lraSy~~ydh~de~taAhsL~Fs~DGe--------------qlf-aGykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 136 HLWDAF-TGKLRASYRAYDHQDEYTAAHSLQFSPDGE--------------QLF-AGYKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred eeeecc-ccccccchhhhhhHHhhhhheeEEecCCCC--------------eEe-ecccceEEEeeccCCCCCCcchhhh
Confidence 999984 4444444432 33 2456899999994 444 45678999999955543222 11
Q ss_pred ----ccccccEeEEEEecCCC-EEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCC
Q psy307 433 ----YGHRQAVRDICFNNTGT-NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPT 507 (1019)
Q Consensus 433 ----~~H~~~V~sl~fspdg~-~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~ 507 (1019)
.+..+-|.+++|+|... .++.+++..++-|+.-..+.++..+. .+
T Consensus 200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg------------------------------gh 249 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG------------------------------GH 249 (406)
T ss_pred hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec------------------------------cc
Confidence 23467899999999655 79999999999998877766665543 34
Q ss_pred CCcccEEEEcCCCCEEEEEec-CCeEEEEEccCcccccceeEEecccc-ccceEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy307 508 MHSMPAVTSSPNNKWLACQSM-DNKILIFSALNRFKLNRKKTFEGHMV-AGYACSLDFSPDMSYLISGDADGKCYIWDWK 585 (1019)
Q Consensus 508 ~~~i~~v~~spdg~~Lasgs~-Dg~I~iwd~~~~~~~~~~~~l~gh~~-~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~ 585 (1019)
.+.|+.++|.++|+.|++|+. |..|..||++... ..+-.+..|.. ...-.-....|+|++|++|+.||.|++||++
T Consensus 250 ~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~--~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 250 GGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR--DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred CCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecC
Confidence 467888888999999999875 6799999998643 23444555542 2233345667899999999999999999999
Q ss_pred C-CceeeeeeccCCCEEEEEEcCCCCcEEEEEeC
Q psy307 586 T-TKLFKKWKAHDGVCISTLWHPHEPSKVVTAGW 618 (1019)
Q Consensus 586 t-~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~ 618 (1019)
+ +..+..+..|+..|+.++++|--+ +++|++.
T Consensus 328 ~~gn~~sv~~~~sd~vNgvslnP~mp-ilatssG 360 (406)
T KOG2919|consen 328 DLGNEVSVTGNYSDTVNGVSLNPIMP-ILATSSG 360 (406)
T ss_pred CCCCcccccccccccccceecCcccc-eeeeccC
Confidence 8 777888889999999999999874 5666554
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.2e-16 Score=167.22 Aligned_cols=260 Identities=16% Similarity=0.188 Sum_probs=185.1
Q ss_pred ceeeeccCCCCeEEEEEcCCCC-cEEEEeeCCCeEEEEecC---CCcEEEEEecccCccEeEEEEcCCCCceeEEEeecC
Q psy307 327 QVHTWEGHTKGISAIRWFPKSA-HLLLSCSMDCRVKLWEVY---KERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFP 402 (1019)
Q Consensus 327 ~i~~l~gH~~~V~~i~fspd~g-~lLaSgs~Dg~I~IWdl~---~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p 402 (1019)
.....+-|.+.|++++|+|.-. .++++|..-|+|-+||+. ....-+..+..|..+|.+|.|+|...
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~---------- 247 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT---------- 247 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh----------
Confidence 3456677899999999999755 789999999999999993 23334566788999999998888664
Q ss_pred CCCcEEEEEeCCCcEEEEEccCCC-eEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCce-EEEEecCCce
Q psy307 403 KSAHLLLSCSMDCRVKLWEVYKEH-RCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGEC-ISRFTSRKVA 480 (1019)
Q Consensus 403 ~~~~~L~sgs~Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~-i~~~~~~~~v 480 (1019)
..+++.|.||+|++-|+.... ..+..+..-...+.++.|+.+...++.+..=|...+||++++.. ...+.
T Consensus 248 ---s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~----- 319 (498)
T KOG4328|consen 248 ---SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR----- 319 (498)
T ss_pred ---hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh-----
Confidence 789999999999999994321 12223333455677788888888888888778999999988753 21121
Q ss_pred EEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC-CEEEEEecCCeEEEEEccCccccc-ceeEEeccccccce
Q psy307 481 YCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN-KWLACQSMDNKILIFSALNRFKLN-RKKTFEGHMVAGYA 558 (1019)
Q Consensus 481 ~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg-~~Lasgs~Dg~I~iwd~~~~~~~~-~~~~l~gh~~~~~V 558 (1019)
.|...|.+++++|.. .+|+++|.|++.+|||++.-..-. .......|. ..|
T Consensus 320 -------------------------lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr--rsV 372 (498)
T KOG4328|consen 320 -------------------------LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHR--RSV 372 (498)
T ss_pred -------------------------hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccc--cee
Confidence 122356666666654 568999999999999998542211 122223444 669
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCC----CCceeeeeeccCC------CEEEEEEcCCCCcEEEEEeCCCcEEEEecc
Q psy307 559 CSLDFSPDMSYLISGDADGKCYIWDWK----TTKLFKKWKAHDG------VCISTLWHPHEPSKVVTAGWDAATAKVQDA 628 (1019)
Q Consensus 559 ~~v~fspdg~~Lasgs~DG~I~IWDl~----t~~~l~~l~~h~~------~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~ 628 (1019)
.++.|||.|-.|++.+.|..|+|||.. .-.+..++. |.. ......|.|+. .++++|-.-..|- +.+.
T Consensus 373 ~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~-~li~vg~~~r~ID-v~~~ 449 (498)
T KOG4328|consen 373 NSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDY-NLIVVGRYPRPID-VFDG 449 (498)
T ss_pred eeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCc-cEEEEeccCccee-EEcC
Confidence 999999988889999999999999984 233444443 221 24456799987 6888887776663 3455
Q ss_pred ceeeee
Q psy307 629 NIVKIA 634 (1019)
Q Consensus 629 ~i~ki~ 634 (1019)
+-.+..
T Consensus 450 ~~~q~v 455 (498)
T KOG4328|consen 450 NGGQMV 455 (498)
T ss_pred CCCEEe
Confidence 444433
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-16 Score=159.57 Aligned_cols=262 Identities=14% Similarity=0.169 Sum_probs=185.6
Q ss_pred CCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec-ccCccEeEEEEcCCCCceeEEEeec
Q psy307 323 LPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY-GHRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 323 lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~-gh~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
+|+.++..+++|.+.|+++.|-.. .+|++|..-|.|++|++. +.+.+..+. .|...|+.+...|++
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~--~rL~sg~~~G~V~~w~lq-t~r~~~~~r~~g~~~it~lq~~p~d---------- 68 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQAN--ERLMSGLSVGIVKMWVLQ-TERDLPLIRLFGRLFITNLQSIPND---------- 68 (323)
T ss_pred CCCCCeeEeccccchheehhhccc--hhhhcccccceEEEEEee-cCccchhhhhhccceeeceeecCCc----------
Confidence 356678899999999999999763 469999999999999994 444455555 567788888877764
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCCC-----------------------eE-------------------------EEEE-
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYKEH-----------------------RC-------------------------VRTY- 432 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~~~-----------------------~~-------------------------~~~l- 432 (1019)
.|.+-+.|+.+.+|++.... +. ++..
T Consensus 69 -----~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~d 143 (323)
T KOG0322|consen 69 -----SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIAD 143 (323)
T ss_pred -----chhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccC
Confidence 46777788888888773210 00 0000
Q ss_pred ---ccccccEeEEEEec-CCCE--EEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCC
Q psy307 433 ---YGHRQAVRDICFNN-TGTN--FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADP 506 (1019)
Q Consensus 433 ---~~H~~~V~sl~fsp-dg~~--l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~ 506 (1019)
.+..+.+.|..+.- ++.+ ++.|..+|.+.+||+.++..+-.+..... ...-...
T Consensus 144 d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~k--------------------v~~~~as 203 (323)
T KOG0322|consen 144 DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSK--------------------VESPNAS 203 (323)
T ss_pred chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccc--------------------cccchhh
Confidence 11234555555432 3343 55677789999999998855444432111 1111223
Q ss_pred CCCcccEEEEcCCCCEEEEEecCCeEEEEEccCc-ccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy307 507 TMHSMPAVTSSPNNKWLACQSMDNKILIFSALNR-FKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWK 585 (1019)
Q Consensus 507 ~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~-~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~ 585 (1019)
+..++.++.+.+.-..=++|+.+..+..|++... ..+.......-.+ ..+..+.+-||++.+|+++.||+|+||.++
T Consensus 204 h~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn--pGv~gvrIRpD~KIlATAGWD~RiRVyswr 281 (323)
T KOG0322|consen 204 HKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN--PGVSGVRIRPDGKILATAGWDHRIRVYSWR 281 (323)
T ss_pred ccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecC--CCccceEEccCCcEEeecccCCcEEEEEec
Confidence 4556777777766555577888889999988743 1222112221111 237788999999999999999999999999
Q ss_pred CCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 586 TTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 586 t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+..++..++-|.+.|++++|+|+. .+++++|.|++|.+|
T Consensus 282 tl~pLAVLkyHsagvn~vAfspd~-~lmAaaskD~rISLW 320 (323)
T KOG0322|consen 282 TLNPLAVLKYHSAGVNAVAFSPDC-ELMAAASKDARISLW 320 (323)
T ss_pred cCCchhhhhhhhcceeEEEeCCCC-chhhhccCCceEEee
Confidence 999999999999999999999996 499999999999887
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.1e-16 Score=174.85 Aligned_cols=263 Identities=17% Similarity=0.254 Sum_probs=172.9
Q ss_pred CCCcEEEEeeCCCeEEEEecCCC-----cEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEE
Q psy307 346 KSAHLLLSCSMDCRVKLWEVYKE-----RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLW 420 (1019)
Q Consensus 346 d~g~lLaSgs~Dg~I~IWdl~~~-----~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IW 420 (1019)
...++|+.+..||.|.++|.... ...+.....|...|.++.|.| |. ..|++++.|.++++|
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge-------------~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GE-------------SLLVSASGDSTIRPW 127 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cc-------------eeEEEccCCceeeee
Confidence 35789999999999999998421 122456678999999999998 53 689999999999999
Q ss_pred EccCCCeEEEE--EccccccEeEEEEecCCC-EEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEE---ecCCCeeee
Q psy307 421 EVYKEHRCVRT--YYGHRQAVRDICFNNTGT-NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKF---HPDEDKQHL 494 (1019)
Q Consensus 421 Dl~~~~~~~~~--l~~H~~~V~sl~fspdg~-~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~---~p~~~~~~~ 494 (1019)
|+ ....++.. +.||.+.|.++||.|... .|++|+.||.|.|||++-...-........++...- .|...
T Consensus 128 dv-k~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp---- 202 (720)
T KOG0321|consen 128 DV-KTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP---- 202 (720)
T ss_pred ee-ccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch----
Confidence 99 56666555 899999999999999765 588999999999999875431110000000000000 00000
Q ss_pred ccCCCceeeeCCCCCcccE---EEEcCCCCEEEEEec-CCeEEEEEccCcccccc---eeEEecccc---ccceEEEEEc
Q psy307 495 DIPVDMKYIADPTMHSMPA---VTSSPNNKWLACQSM-DNKILIFSALNRFKLNR---KKTFEGHMV---AGYACSLDFS 564 (1019)
Q Consensus 495 ~~~~~~~~i~~~~~~~i~~---v~~spdg~~Lasgs~-Dg~I~iwd~~~~~~~~~---~~~l~gh~~---~~~V~~v~fs 564 (1019)
......-...+...|.+ +.+..|...||+++. |+.|+|||++....... .....-+.. ...+.++...
T Consensus 203 --~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD 280 (720)
T KOG0321|consen 203 --LKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD 280 (720)
T ss_pred --hhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec
Confidence 00000011122233333 555668888888877 99999999986533211 111111111 1236677788
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCC--ceeeeeeccCC--CEEEEEEcCCCCcEEEEEeCCCcEEEEeccce
Q psy307 565 PDMSYLISGDADGKCYIWDWKTT--KLFKKWKAHDG--VCISTLWHPHEPSKVVTAGWDAATAKVQDANI 630 (1019)
Q Consensus 565 pdg~~Lasgs~DG~I~IWDl~t~--~~l~~l~~h~~--~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i 630 (1019)
..|.+|.+.+.|+.|++|++.+- .++..+.++.. .-..-..+|++ ..+++|++|...++|.-.+.
T Consensus 281 ssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~ 349 (720)
T KOG0321|consen 281 SSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSP 349 (720)
T ss_pred CCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCC-ceEeccCCCcceeeeeecCc
Confidence 88899888888999999999764 23444444432 11223468888 69999999999988854443
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=9e-15 Score=146.84 Aligned_cols=289 Identities=17% Similarity=0.225 Sum_probs=197.9
Q ss_pred cCCCCCCCCeeeeCCCCCceeeecCCCCC--CccCC-ccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC
Q psy307 291 KDPTDYQGRSFLHPPHDVGTNLRSDTPPD--RCFLP-KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK 367 (1019)
Q Consensus 291 ~~~~~~~gr~~~~~~~D~~v~lw~~~~~~--~~~lp-~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~ 367 (1019)
..+.++.+++++.+..+|+|-+.+..... ..+.+ +..+...++|.++|+.++|.. .+|++|+ ||.|+=|....
T Consensus 15 ~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W~E 90 (325)
T KOG0649|consen 15 AQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEWNE 90 (325)
T ss_pred HHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEeeehh
Confidence 44667889999999999999988775422 12223 345667799999999999984 3677666 59999998743
Q ss_pred CcEEE------E-EecccC-----ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccc
Q psy307 368 ERRCV------R-TYYGHR-----QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGH 435 (1019)
Q Consensus 368 ~~~~~------~-~~~gh~-----~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H 435 (1019)
..+.. + ...-|. ..|+++-..|.. +. ++.++.|+.++-||+ ..++..+.+.||
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-------------nS-i~~AgGD~~~y~~dl-E~G~i~r~~rGH 155 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-------------NS-ILFAGGDGVIYQVDL-EDGRIQREYRGH 155 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCC-------------Cc-EEEecCCeEEEEEEe-cCCEEEEEEcCC
Confidence 22211 0 111122 235555555544 34 444559999999999 889999999999
Q ss_pred cccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEE
Q psy307 436 RQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVT 515 (1019)
Q Consensus 436 ~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~ 515 (1019)
++.|.++.--.....++||+.||++|+||+++++++..+...+...++. |+ -...|.++
T Consensus 156 tDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lR--p~------------------~g~wigal- 214 (325)
T KOG0649|consen 156 TDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLR--PD------------------WGKWIGAL- 214 (325)
T ss_pred cceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcC--cc------------------cCceeEEE-
Confidence 9999999986666679999999999999999999999887655433322 11 01223333
Q ss_pred EcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec
Q psy307 516 SSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA 595 (1019)
Q Consensus 516 ~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~ 595 (1019)
.-+..+++||+ .-.+.+|.++..... .+..+. +.+..+.|. ...+++++....|.-|.+ +|.+-..++.
T Consensus 215 -a~~edWlvCGg-Gp~lslwhLrsse~t-~vfpip-----a~v~~v~F~--~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~ 283 (325)
T KOG0649|consen 215 -AVNEDWLVCGG-GPKLSLWHLRSSEST-CVFPIP-----ARVHLVDFV--DDCVLIGGEGNHVQSYTL-NGVLQANIPV 283 (325)
T ss_pred -eccCceEEecC-CCceeEEeccCCCce-EEEecc-----cceeEeeee--cceEEEeccccceeeeee-ccEEEEeccC
Confidence 44667888876 568999999876332 223333 346677884 446788887888998876 4555555555
Q ss_pred cCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccce
Q psy307 596 HDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANI 630 (1019)
Q Consensus 596 h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i 630 (1019)
....+.+..|+..--..+-.+|....+.++-|...
T Consensus 284 ~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~~~~~ 318 (325)
T KOG0649|consen 284 ESTACYSASWQTSPIKFISIAGFSNKLHILKDFRF 318 (325)
T ss_pred CccceeeecccCCceEEEEecccceeeeeeecccc
Confidence 55567777777654345556677777777655544
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=164.94 Aligned_cols=244 Identities=23% Similarity=0.314 Sum_probs=180.9
Q ss_pred eeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEe---c
Q psy307 300 SFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTY---Y 376 (1019)
Q Consensus 300 ~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~---~ 376 (1019)
.++.++.-|.|++-+.. ..++...+.||-+.|+.|.|.|+..+++++||.|..||+|++ .+..|+..+ .
T Consensus 107 ~la~~G~~GvIrVid~~-------~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI-~~~~Cv~VfGG~e 178 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVV-------SGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI-QTDVCVAVFGGVE 178 (385)
T ss_pred eEEeecceeEEEEEecc-------hhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEec-cCCeEEEEecccc
Confidence 45667777888887654 346678899999999999999998999999999999999999 566777664 6
Q ss_pred ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC------------------------eE---E
Q psy307 377 GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH------------------------RC---V 429 (1019)
Q Consensus 377 gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~------------------------~~---~ 429 (1019)
||...|.++.|+++| .+|++++.|.++++|++.... .. .
T Consensus 179 gHrdeVLSvD~~~~g--------------d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 179 GHRDEVLSVDFSLDG--------------DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred cccCcEEEEEEcCCC--------------CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 799999999999999 699999999999999995110 00 0
Q ss_pred EEEccccccEeEEEEecCCCEEEEEEcCCeEEEEEC-CCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCC
Q psy307 430 RTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDT-ESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTM 508 (1019)
Q Consensus 430 ~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl-~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~ 508 (1019)
.+-.-|...|-|+.|- |.+++|-|.++.|..|-. +-++.+...........+ .......+
T Consensus 245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti-----------------~~~~~~~~ 305 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTI-----------------LGEFDYPM 305 (385)
T ss_pred cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceee-----------------eeEeccCc
Confidence 1223477888888884 688999999999999976 222222222111100000 00011122
Q ss_pred Cccc--EEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy307 509 HSMP--AVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWK 585 (1019)
Q Consensus 509 ~~i~--~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~ 585 (1019)
..+. ..++.|-+++||.|...|.|.+||++..... ...++..+.....|...+||.||.+|+..+.||+|.-||.-
T Consensus 306 c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~-~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 306 CDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP-KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc-cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 2232 3456778999999999999999999876543 34455555566779999999999999999999999999964
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-16 Score=173.69 Aligned_cols=260 Identities=19% Similarity=0.206 Sum_probs=183.3
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCC-CCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecC-----
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPP-DRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVY----- 366 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~-~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~----- 366 (1019)
++.+....+++++.|+.+++|..... .......+++.+|++|.++|.|+++.+ +++.+++|+.||+|+.|++.
T Consensus 301 ~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n~dp 379 (577)
T KOG0642|consen 301 AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWNLPPNQDP 379 (577)
T ss_pred hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCceeeeeccCCCCCc
Confidence 35556677999999999999998321 112234578999999999999999988 58999999999999999652
Q ss_pred ----CCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccc--cccEe
Q psy307 367 ----KERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGH--RQAVR 440 (1019)
Q Consensus 367 ----~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H--~~~V~ 440 (1019)
.......++.||...|+.+++++.. ..|++++.||++++|+...... .++... .+.-.
T Consensus 380 ~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--------------~~Llscs~DgTvr~w~~~~~~~--~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 380 DDSYDPSVLSGTLLGHTDAVWLLALSSTK--------------DRLLSCSSDGTVRLWEPTEESP--CTFGEPKEHGYPL 443 (577)
T ss_pred ccccCcchhccceeccccceeeeeecccc--------------cceeeecCCceEEeeccCCcCc--cccCCccccCCcc
Confidence 2224556789999999999999877 6799999999999999844333 333222 22233
Q ss_pred EEEEecCC-CEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC
Q psy307 441 DICFNNTG-TNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN 519 (1019)
Q Consensus 441 sl~fspdg-~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd 519 (1019)
++.+-... ...++...-+.--+.+.+.+..+..+....... ......+..+.++|.
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~-----------------------~~~~~~in~vVs~~~ 500 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPG-----------------------PRRYPQINKVVSHPT 500 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCc-----------------------ccccCccceEEecCC
Confidence 34443222 112222222333333444444443333221100 001134667888999
Q ss_pred CCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccC
Q psy307 520 NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHD 597 (1019)
Q Consensus 520 g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~ 597 (1019)
+.+.+++..|+.|+++|..++. .+.....|. ..++++++.|+|-+|++|+.||.+++|.+....++....+|.
T Consensus 501 ~~~~~~~hed~~Ir~~dn~~~~---~l~s~~a~~--~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 501 ADITFTAHEDRSIRFFDNKTGK---ILHSMVAHK--DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred CCeeEecccCCceecccccccc---cchheeecc--ceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 9999999999999999998873 345556666 559999999999999999999999999998877777666664
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.2e-16 Score=169.34 Aligned_cols=288 Identities=19% Similarity=0.273 Sum_probs=223.6
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
.+...|.+|.+.|..|.|+.. |..|+|||.|..|.+||.......+.-..||...|..-.|-|... .
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~-Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~------------d 199 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQR-GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSG------------D 199 (559)
T ss_pred hhhhcccCCCCccceeeeccc-CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCC------------C
Confidence 345678899999999999984 899999999999999999777777777789999888888877542 2
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEE--EEEccccccEeEEEEecCCCE-EEEEEcCCeEEEEECCCCceEEEEec---C-C
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCV--RTYYGHRQAVRDICFNNTGTN-FISAGYDRYLKLWDTESGECISRFTS---R-K 478 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~--~~l~~H~~~V~sl~fspdg~~-l~S~s~Dg~I~lWDl~t~~~i~~~~~---~-~ 478 (1019)
.-|++++.||.|++=.+...+.+. ..+..|.+.|..++.-|+..+ |.|++.|+.+.-.|++.+.....+.. + .
T Consensus 200 ~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~ 279 (559)
T KOG1334|consen 200 RTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK 279 (559)
T ss_pred cCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCc
Confidence 579999999999998886665543 456779999999999998765 99999999999999998866544432 1 1
Q ss_pred ---ceEEEEEecCCCeeee-----------ccCC-C-------cee-----eeCCCCCcccEEEEcCCCCEEEEEecCCe
Q psy307 479 ---VAYCVKFHPDEDKQHL-----------DIPV-D-------MKY-----IADPTMHSMPAVTSSPNNKWLACQSMDNK 531 (1019)
Q Consensus 479 ---~v~~v~~~p~~~~~~~-----------~~~~-~-------~~~-----i~~~~~~~i~~v~~spdg~~Lasgs~Dg~ 531 (1019)
..+.++.+|....... +.+. . ... +.......|++++++.++.-|++...|-.
T Consensus 280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~ 359 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED 359 (559)
T ss_pred cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc
Confidence 3456677775543222 1000 0 000 11123346899999988888888888999
Q ss_pred EEEEEccCccc----------ccceeEEeccccccceEEEEE-cCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCE
Q psy307 532 ILIFSALNRFK----------LNRKKTFEGHMVAGYACSLDF-SPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVC 600 (1019)
Q Consensus 532 I~iwd~~~~~~----------~~~~~~l~gh~~~~~V~~v~f-spdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V 600 (1019)
|++|.-.-+.- ....+.++||.+...|.++.| -|...|+++|+.-|.|.||+-++++.+.-+++....|
T Consensus 360 IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VV 439 (559)
T KOG1334|consen 360 IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVV 439 (559)
T ss_pred eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceE
Confidence 99995432211 122334899998888888876 5788999999999999999999999999999877899
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEec
Q psy307 601 ISTLWHPHEPSKVVTAGWDAATAKVQD 627 (1019)
Q Consensus 601 ~sl~~sp~~~~~l~s~s~Dg~I~iwwd 627 (1019)
+|+.=||..+ .|+++|-|..|++|-.
T Consensus 440 NCLEpHP~~P-vLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 440 NCLEPHPHLP-VLASSGIDHDVKIWTP 465 (559)
T ss_pred eccCCCCCCc-hhhccCCccceeeecC
Confidence 9999999996 9999999999988854
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=165.13 Aligned_cols=267 Identities=16% Similarity=0.161 Sum_probs=190.3
Q ss_pred eCCCCCceeeecCCCCC--CccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC---cEEEEEecc
Q psy307 303 HPPHDVGTNLRSDTPPD--RCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE---RRCVRTYYG 377 (1019)
Q Consensus 303 ~~~~D~~v~lw~~~~~~--~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~---~~~~~~~~g 377 (1019)
.++....++||+..... .|+++... ..+|.+++|+..+.-.+++.+.|..|++|.-... -..++...|
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~-------~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g 79 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTA-------EPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG 79 (673)
T ss_pred eeccCCceEEeecccccCccccccCCC-------CCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc
Confidence 33444578999876432 33333211 1249999998854344556678899999975322 112222222
Q ss_pred cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcC
Q psy307 378 HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD 457 (1019)
Q Consensus 378 h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~D 457 (1019)
. .-.|++..... .++++|+..++|+|||++ ...+.+.+.+|...|+++.++....+|++++..
T Consensus 80 d--~~~Cv~~~s~S--------------~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~g 142 (673)
T KOG4378|consen 80 D--NAFCVACASQS--------------LYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDG 142 (673)
T ss_pred c--hHHHHhhhhcc--------------eeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCCcceeEEeccC
Confidence 2 22222222211 689999999999999994 777888999999999999999999999999999
Q ss_pred CeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCC-EEEEEecCCeEEEEE
Q psy307 458 RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK-WLACQSMDNKILIFS 536 (1019)
Q Consensus 458 g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~-~Lasgs~Dg~I~iwd 536 (1019)
|.|.|..+.++.....|..+. ...+.-+.++|..+ +|.+.+.+|.|.+||
T Consensus 143 Gdiiih~~~t~~~tt~f~~~s-----------------------------gqsvRll~ys~skr~lL~~asd~G~VtlwD 193 (673)
T KOG4378|consen 143 GDIIIHGTKTKQKTTTFTIDS-----------------------------GQSVRLLRYSPSKRFLLSIASDKGAVTLWD 193 (673)
T ss_pred CcEEEEecccCccccceecCC-----------------------------CCeEEEeecccccceeeEeeccCCeEEEEe
Confidence 999999999988777776431 11223344455444 466788999999999
Q ss_pred ccCcccccceeEEeccccccceEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEE
Q psy307 537 ALNRFKLNRKKTFEGHMVAGYACSLDFSPD-MSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVT 615 (1019)
Q Consensus 537 ~~~~~~~~~~~~l~gh~~~~~V~~v~fspd-g~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s 615 (1019)
+....+. ......|. .+...|+|+|. ..+|++.+.|..|.+||..+.+....+.. +.+..+++|.++| .+|++
T Consensus 194 v~g~sp~--~~~~~~Hs--AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G-~~L~a 267 (673)
T KOG4378|consen 194 VQGMSPI--FHASEAHS--APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECG-TYLCA 267 (673)
T ss_pred ccCCCcc--cchhhhcc--CCcCcceecCCccceEEEecccceEEEeecccccccceeee-cCCcceeeecCCc-eEEEe
Confidence 9876432 22334555 67788999995 45788999999999999998887777753 4578999999998 69999
Q ss_pred EeCCCcEEEEeccc
Q psy307 616 AGWDAATAKVQDAN 629 (1019)
Q Consensus 616 ~s~Dg~I~iwwd~~ 629 (1019)
|...|.|+. +|..
T Consensus 268 G~s~G~~i~-YD~R 280 (673)
T KOG4378|consen 268 GNSKGELIA-YDMR 280 (673)
T ss_pred ecCCceEEE-Eecc
Confidence 999999955 4543
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-16 Score=188.31 Aligned_cols=240 Identities=16% Similarity=0.258 Sum_probs=177.9
Q ss_pred eeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccC
Q psy307 300 SFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHR 379 (1019)
Q Consensus 300 ~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~ 379 (1019)
.++.|..||.|.+|+.... ..-.....+.+...|++.|..+.|++..+.+||+|+.||.|.|||+.+...... +
T Consensus 82 lIaGG~edG~I~ly~p~~~-~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~-~---- 155 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASI-IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFT-P---- 155 (1049)
T ss_pred eeeccccCCceEEecchhh-ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCC-C----
Confidence 4788889999999987753 112234578889999999999999999888999999999999999965332211 1
Q ss_pred ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccc--cEeEEEEecCCC-EEEEEEc
Q psy307 380 QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQ--AVRDICFNNTGT-NFISAGY 456 (1019)
Q Consensus 380 ~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~--~V~sl~fspdg~-~l~S~s~ 456 (1019)
+ +..-...|.+++|+-...++|++++.+|.+.|||++.. +.+..+..|.+ .+..+.|+|++. .+++++.
T Consensus 156 ~-------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~ 227 (1049)
T KOG0307|consen 156 G-------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASG 227 (1049)
T ss_pred C-------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCC-CcccccccCCCccceeeeeeCCCCceeeeeecC
Confidence 1 11122235566666666789999999999999999655 55555555543 578899999875 4777776
Q ss_pred CC---eEEEEECCCCc-eEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC-CEEEEEecCCe
Q psy307 457 DR---YLKLWDTESGE-CISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN-KWLACQSMDNK 531 (1019)
Q Consensus 457 Dg---~I~lWDl~t~~-~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg-~~Lasgs~Dg~ 531 (1019)
|. .|.+||++.-. .++++ ..|...|.++.|++.+ .++++++.|++
T Consensus 228 dd~~PviqlWDlR~assP~k~~------------------------------~~H~~GilslsWc~~D~~lllSsgkD~~ 277 (1049)
T KOG0307|consen 228 DDSAPVIQLWDLRFASSPLKIL------------------------------EGHQRGILSLSWCPQDPRLLLSSGKDNR 277 (1049)
T ss_pred CCCCceeEeecccccCCchhhh------------------------------cccccceeeeccCCCCchhhhcccCCCC
Confidence 64 59999987432 23333 3345566667777665 88999999999
Q ss_pred EEEEEccCcccccceeEEeccccccceEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCc
Q psy307 532 ILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMS-YLISGDADGKCYIWDWKTTK 588 (1019)
Q Consensus 532 I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~-~Lasgs~DG~I~IWDl~t~~ 588 (1019)
|.+|+..++..+ ..+.. .+.++..+.|+|... .+++++-||.|.|+.+.++.
T Consensus 278 ii~wN~~tgEvl---~~~p~--~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 278 IICWNPNTGEVL---GELPA--QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeEecCCCceEe---eecCC--CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999987433 44433 237789999999655 78889999999999987654
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=159.50 Aligned_cols=273 Identities=15% Similarity=0.230 Sum_probs=188.4
Q ss_pred CeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCC-CCcEEEEeeCCCeEEEEecCCCcEEEE-Eec
Q psy307 299 RSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPK-SAHLLLSCSMDCRVKLWEVYKERRCVR-TYY 376 (1019)
Q Consensus 299 r~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd-~g~lLaSgs~Dg~I~IWdl~~~~~~~~-~~~ 376 (1019)
..++++-..+.|++++... .+.+..+++|...++.++|..+ +++.+.+|+.||+|++||+....+..+ .+.
T Consensus 41 ~~vav~lSngsv~lyd~~t-------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT-------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT 113 (376)
T ss_pred eeEEEEecCCeEEEEeccc-------hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence 5577888899999998763 4567889999999999999875 789999999999999999975544333 344
Q ss_pred ccC-ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe----CCCcEEEEEccCCCeEEEE-EccccccEeEEEEecCC-C
Q psy307 377 GHR-QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS----MDCRVKLWEVYKEHRCVRT-YYGHRQAVRDICFNNTG-T 449 (1019)
Q Consensus 377 gh~-~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs----~Dg~I~IWDl~~~~~~~~~-l~~H~~~V~sl~fspdg-~ 449 (1019)
+|. .+..+++....+ +++++|. .+-.|.+||++...+++.. ...|...|++++|+|.. +
T Consensus 114 ~~~~~~f~~ld~nck~--------------~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pn 179 (376)
T KOG1188|consen 114 QQSGTPFICLDLNCKK--------------NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPN 179 (376)
T ss_pred CCCCCcceEeeccCcC--------------CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCC
Confidence 454 345555554343 4666664 3678999999888885554 46799999999999964 5
Q ss_pred EEEEEEcCCeEEEEECCCCc----eEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC-CEEE
Q psy307 450 NFISAGYDRYLKLWDTESGE----CISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN-KWLA 524 (1019)
Q Consensus 450 ~l~S~s~Dg~I~lWDl~t~~----~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg-~~La 524 (1019)
.|+|||.||.|.|+|+.... ++.++.....|. .+.|+.++ +.|.
T Consensus 180 lLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~-------------------------------~igw~~~~ykrI~ 228 (376)
T KOG1188|consen 180 LLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIH-------------------------------LIGWLSKKYKRIM 228 (376)
T ss_pred eEEeecccceEEeeecCCCcchhhHHHhhcccceee-------------------------------eeeeecCCcceEE
Confidence 79999999999999987542 233333444444 44444444 5688
Q ss_pred EEecCCeEEEEEccCcccccceeEEecc----------ccccceEEEEEcCCCCEEEEEeC-CCeEEEEeCC---C---C
Q psy307 525 CQSMDNKILIFSALNRFKLNRKKTFEGH----------MVAGYACSLDFSPDMSYLISGDA-DGKCYIWDWK---T---T 587 (1019)
Q Consensus 525 sgs~Dg~I~iwd~~~~~~~~~~~~l~gh----------~~~~~V~~v~fspdg~~Lasgs~-DG~I~IWDl~---t---~ 587 (1019)
+-+..++..+|++..+... ..+... ....++...-...++..++.++. -|...++-+. + .
T Consensus 229 clTH~Etf~~~ele~~~~~---~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~ 305 (376)
T KOG1188|consen 229 CLTHMETFAIYELEDGSEE---TWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLL 305 (376)
T ss_pred EEEccCceeEEEccCCChh---hcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeeccccccc
Confidence 8889999999999876421 111111 01133333332334555555544 4555555433 3 3
Q ss_pred ceeeeeec-cCCCEEEEEEcCCCCcEEEEEeCCCcEEEEec
Q psy307 588 KLFKKWKA-HDGVCISTLWHPHEPSKVVTAGWDAATAKVQD 627 (1019)
Q Consensus 588 ~~l~~l~~-h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd 627 (1019)
+.+..+.+ |...|.++.|...+ ..+.|||.||.+..|-.
T Consensus 306 ~~~a~l~g~~~eiVR~i~~~~~~-~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 306 TEPAILQGGHEEIVRDILFDVKN-DVLYTGGEDGLLQAWKV 345 (376)
T ss_pred CccccccCCcHHHHHHHhhhccc-ceeeccCCCceEEEEec
Confidence 44556665 66788899888776 69999999999988853
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.8e-17 Score=183.72 Aligned_cols=268 Identities=18% Similarity=0.303 Sum_probs=193.0
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
+.+..+.||..+|+|+.|.. +|+++++|+.|..|+||.. .+..|+..+.||.+.|++++.+...
T Consensus 181 k~ikrLlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~-et~~~lAs~rGhs~ditdlavs~~n-------------- 244 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSM-ETARCLASCRGHSGDITDLAVSSNN-------------- 244 (1113)
T ss_pred HHHHHHHhhhhheeeeeecc-ccceEeecCccceeeeeec-cchhhhccCCCCccccchhccchhh--------------
Confidence 45677899999999999988 6999999999999999997 7778999999999999999998876
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEE-----EEecCCce
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECIS-----RFTSRKVA 480 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~-----~~~~~~~v 480 (1019)
.+++++|.|..|++|.+ ..+.++..+.+|++.|++|+|+|-. +.+.||++++||.+-.-.+. .+..+..+
T Consensus 245 ~~iaaaS~D~vIrvWrl-~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~ 319 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRL-PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLV 319 (1113)
T ss_pred hhhhhcccCceEEEEec-CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccce
Confidence 58999999999999999 7888999999999999999999954 78899999999987111111 11122233
Q ss_pred EEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCE-----------EEEEecCCeEEEEEccCcccccceeEE
Q psy307 481 YCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKW-----------LACQSMDNKILIFSALNRFKLNRKKTF 549 (1019)
Q Consensus 481 ~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~-----------Lasgs~Dg~I~iwd~~~~~~~~~~~~l 549 (1019)
.++.|...+........ -.....+.+..+++...+-. .++.-.+-.+.+|++.++.. ...+
T Consensus 320 ~s~~~~~~~~~f~Tgs~-----d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l---~H~l 391 (1113)
T KOG0644|consen 320 DSILFENNGDRFLTGSR-----DGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL---LHNL 391 (1113)
T ss_pred eeeeccccccccccccC-----CcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchh---hhhh
Confidence 33333332221111111 11112233334444433333 33444556788899888743 4566
Q ss_pred eccccccceEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 550 EGHMVAGYACSLDFSPD-MSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 550 ~gh~~~~~V~~v~fspd-g~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.+|. .++..+.++|- .+...+++.||...|||+-.|.+++......+.+...+|+++|. .++....-|.+.+.
T Consensus 392 ~ghs--d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgt-s~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 392 MGHS--DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGT-SIALSDDHGQLYIL 465 (1113)
T ss_pred cccc--cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCc-eEecCCCCCceEEe
Confidence 6776 55777889994 45667899999999999999888776543345677888999984 55555555666554
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-15 Score=159.80 Aligned_cols=228 Identities=21% Similarity=0.390 Sum_probs=157.4
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC---c-----EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE---R-----RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~---~-----~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
.+|..+.|.+.+...|+||+.|..|+||-+... + ..+..+..|...|+++.|+|+| .+
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g--------------el 79 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG--------------EL 79 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc--------------Ce
Confidence 489999999976669999999999999988421 1 2345678899999999999999 79
Q ss_pred EEEEeCCCcEEEEEcc--------C-----C--CeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEE
Q psy307 408 LLSCSMDCRVKLWEVY--------K-----E--HRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECIS 472 (1019)
Q Consensus 408 L~sgs~Dg~I~IWDl~--------~-----~--~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~ 472 (1019)
|+||+.+|.|.+|... + . ......+.+|...|..++|+|++..+++++.|.++++||+..|+.+.
T Consensus 80 LASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 80 LASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred eeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEe
Confidence 9999999999999874 1 1 23456678899999999999999999999999999999999999887
Q ss_pred EEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccce------
Q psy307 473 RFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRK------ 546 (1019)
Q Consensus 473 ~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~------ 546 (1019)
.+..+ .+.+..++|.|-++++++-+.|...+++++.........
T Consensus 160 ~~~dh------------------------------~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~ 209 (434)
T KOG1009|consen 160 ILDDH------------------------------EHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMP 209 (434)
T ss_pred ecccc------------------------------ccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEee
Confidence 76543 244445555566666666666655555544332111111
Q ss_pred ------------eEEeccccccceEEEEEcCCCCEEEEEeC----CCe-----EEEEeCCC-CceeeeeeccCCCEEEEE
Q psy307 547 ------------KTFEGHMVAGYACSLDFSPDMSYLISGDA----DGK-----CYIWDWKT-TKLFKKWKAHDGVCISTL 604 (1019)
Q Consensus 547 ------------~~l~gh~~~~~V~~v~fspdg~~Lasgs~----DG~-----I~IWDl~t-~~~l~~l~~h~~~V~sl~ 604 (1019)
+.+...+.......++|+|||.+|++.+. +|. .++++-+. .++...+.+...++..+.
T Consensus 210 ~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr 289 (434)
T KOG1009|consen 210 AKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVR 289 (434)
T ss_pred ecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEE
Confidence 11111122233556889999999987643 222 24443321 123334444444555555
Q ss_pred EcC
Q psy307 605 WHP 607 (1019)
Q Consensus 605 ~sp 607 (1019)
++|
T Consensus 290 ~~p 292 (434)
T KOG1009|consen 290 FSP 292 (434)
T ss_pred eee
Confidence 555
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-15 Score=165.11 Aligned_cols=268 Identities=16% Similarity=0.271 Sum_probs=193.0
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
++.++|..++.+. +..+-+++.. .+.++.+++||.+.|+|++|+.+ |..++||+.|..|.||+-...+.+
T Consensus 19 afkPDGsqL~lAA-g~rlliyD~n-------dG~llqtLKgHKDtVycVAys~d-GkrFASG~aDK~VI~W~~klEG~L- 88 (1081)
T KOG1538|consen 19 AFKPDGTQLILAA-GSRLLVYDTS-------DGTLLQPLKGHKDTVYCVAYAKD-GKRFASGSADKSVIIWTSKLEGIL- 88 (1081)
T ss_pred EECCCCceEEEec-CCEEEEEeCC-------CcccccccccccceEEEEEEccC-CceeccCCCceeEEEeccccccee-
Confidence 4677888877664 3456667655 24678899999999999999995 899999999999999987443321
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
-..|...|.|+.|+|-. +.|++++.. ..-+|...... +.. ......|.+++|..||++|+
T Consensus 89 --kYSH~D~IQCMsFNP~~--------------h~LasCsLs-dFglWS~~qK~--V~K-~kss~R~~~CsWtnDGqyla 148 (1081)
T KOG1538|consen 89 --KYSHNDAIQCMSFNPIT--------------HQLASCSLS-DFGLWSPEQKS--VSK-HKSSSRIICCSWTNDGQYLA 148 (1081)
T ss_pred --eeccCCeeeEeecCchH--------------HHhhhcchh-hccccChhhhh--HHh-hhhheeEEEeeecCCCcEEE
Confidence 13599999999999987 456665543 34466542111 111 11235678889999999999
Q ss_pred EEEcCCeEEEEECCCCceEEEEe----cCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec
Q psy307 453 SAGYDRYLKLWDTESGECISRFT----SRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM 528 (1019)
Q Consensus 453 S~s~Dg~I~lWDl~t~~~i~~~~----~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~ 528 (1019)
-|-.||+|.|-+-. |+....+. ...++.+++|+|.... .....+++...
T Consensus 149 lG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~--------------------------G~~di~aV~DW 201 (1081)
T KOG1538|consen 149 LGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGE--------------------------GRNDILAVADW 201 (1081)
T ss_pred EeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCC--------------------------CccceEEEEec
Confidence 99999999998743 33333332 2356667777665320 01245677777
Q ss_pred CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCC
Q psy307 529 DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPH 608 (1019)
Q Consensus 529 Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~ 608 (1019)
..++.+|.+.... +..-+.+. -..+|+.+.++|.|+..|+.|+.+.+|- +.|-.+.++...+..|++++.+|+
T Consensus 202 ~qTLSFy~LsG~~-Igk~r~L~-----FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PN 274 (1081)
T KOG1538|consen 202 GQTLSFYQLSGKQ-IGKDRALN-----FDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPN 274 (1081)
T ss_pred cceeEEEEeccee-ecccccCC-----CCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccC
Confidence 7888888776532 11112221 2256899999999999999999999996 677788888777889999999999
Q ss_pred CCcEEEEEeCCCcEEEE
Q psy307 609 EPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 609 ~~~~l~s~s~Dg~I~iw 625 (1019)
+ +.++.|+.||+|..+
T Consensus 275 s-Q~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 275 S-QYVVVGCQDGTIACY 290 (1081)
T ss_pred C-ceEEEEEccCeeehh
Confidence 8 799999999999664
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=170.84 Aligned_cols=294 Identities=16% Similarity=0.252 Sum_probs=199.1
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccC---ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHR---QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS 412 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~---~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs 412 (1019)
+.-..+.|+|- ...++++...-.|+|||. ..++++..+..+. ..|+++++-++. +..++++|+
T Consensus 1065 ~~pk~~~~hpf-~p~i~~ad~r~~i~vwd~-e~~~~l~~F~n~~~~~t~Vs~l~liNe~------------D~aLlLtas 1130 (1387)
T KOG1517|consen 1065 QPPKTLKFHPF-EPQIAAADDRERIRVWDW-EKGRLLNGFDNGAFPDTRVSDLELINEQ------------DDALLLTAS 1130 (1387)
T ss_pred CCCceeeecCC-CceeEEcCCcceEEEEec-ccCceeccccCCCCCCCccceeeeeccc------------chhheeeec
Confidence 34556777874 667888888889999999 4455565555443 457777665543 346899999
Q ss_pred CCCcEEEEEccCCC----eEEEEEcc---c----cccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceE
Q psy307 413 MDCRVKLWEVYKEH----RCVRTYYG---H----RQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY 481 (1019)
Q Consensus 413 ~Dg~I~IWDl~~~~----~~~~~l~~---H----~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~ 481 (1019)
.||.|+||+-.... +++..+.+ + .+.=.-+.|.....+|+++|.-+.|+|||+....+...+.....
T Consensus 1131 ~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-- 1208 (1387)
T KOG1517|consen 1131 SDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-- 1208 (1387)
T ss_pred cCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC--
Confidence 99999999875442 33333322 1 12223457887777888888889999999998887766654321
Q ss_pred EEEEecCCCeeeeccCCCceeeeCCCCCcccEEEE-cCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEE
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTS-SPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~-spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~ 560 (1019)
..++++.- .+.|+.|++|..||.|++||.+....-..+...+.|.....|..
T Consensus 1209 ---------------------------t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~ 1261 (1387)
T KOG1517|consen 1209 ---------------------------TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVH 1261 (1387)
T ss_pred ---------------------------ccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccccee
Confidence 12222222 23479999999999999999986654455677778875555889
Q ss_pred EEEcCCCCE-EEEEeCCCeEEEEeCCCCce--eeeeeccC--C-CEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeee
Q psy307 561 LDFSPDMSY-LISGDADGKCYIWDWKTTKL--FKKWKAHD--G-VCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIA 634 (1019)
Q Consensus 561 v~fspdg~~-Lasgs~DG~I~IWDl~t~~~--l~~l~~h~--~-~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~ 634 (1019)
+.+-+.|-- |++|+.||.|++||++.... .-++..|. | .++++..|++.+ .+++|+. +.|++|... -.+
T Consensus 1262 ~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~-G~~-- 1336 (1387)
T KOG1517|consen 1262 LSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLS-GEQ-- 1336 (1387)
T ss_pred EEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecC-hhh--
Confidence 999887654 99999999999999987422 22333443 4 589999999984 7888877 788766211 000
Q ss_pred eeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHh
Q psy307 635 VEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILS 714 (1019)
Q Consensus 635 ~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt 714 (1019)
+ .++.+.++ +.. -+.|++.||+|+|.. -+++.
T Consensus 1337 ---------l---------------------------~~~k~n~~----F~~------q~~gs~scL~FHP~~--~llAa 1368 (1387)
T KOG1517|consen 1337 ---------L---------------------------NIIKYNPG----FMG------QRIGSVSCLAFHPHR--LLLAA 1368 (1387)
T ss_pred ---------h---------------------------cccccCcc----ccc------CcCCCcceeeecchh--Hhhhh
Confidence 0 01111110 100 235677999999998 78888
Q ss_pred hcCCCchhhHH
Q psy307 715 KLSDKNASLEE 725 (1019)
Q Consensus 715 ~~~d~~i~lw~ 725 (1019)
|..|.+|.++.
T Consensus 1369 G~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1369 GSADSTVSIYS 1379 (1387)
T ss_pred ccCCceEEEee
Confidence 88888876653
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.6e-14 Score=163.47 Aligned_cols=386 Identities=17% Similarity=0.255 Sum_probs=253.6
Q ss_pred ccCCCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCC--cEEEEeeCCCeEEEEecCC
Q psy307 290 IKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSA--HLLLSCSMDCRVKLWEVYK 367 (1019)
Q Consensus 290 ~~~~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g--~lLaSgs~Dg~I~IWdl~~ 367 (1019)
..+.++.+++.++..+ +..|+++... ...+++.+.+|..+++.+.+.|... .++++++.||.|++||. .
T Consensus 20 ~~avfSnD~k~l~~~~-~~~V~VyS~~-------Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~-~ 90 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCT-GNFVKVYSTA-------TGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDW-S 90 (792)
T ss_pred cccccccCCcEEEEee-CCEEEEEecc-------hHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecC-C
Confidence 4456788888777665 4678888665 4567889999999999999998655 56789999999999998 4
Q ss_pred CcEEEEEecccCcc----------------------------------------------------------EeEEEEcC
Q psy307 368 ERRCVRTYYGHRQA----------------------------------------------------------VRDICFNN 389 (1019)
Q Consensus 368 ~~~~~~~~~gh~~~----------------------------------------------------------V~~i~fsp 389 (1019)
...+++++..+... -.+|.+++
T Consensus 91 ~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~ 170 (792)
T KOG1963|consen 91 DGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN 170 (792)
T ss_pred CcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC
Confidence 44444433221100 01122222
Q ss_pred CCCce--------------------------------eEEEeecCCCCcEEEEEeCCCcEEEEEccC---CCeEEEEEcc
Q psy307 390 TGTNF--------------------------------ISAIRWFPKSAHLLLSCSMDCRVKLWEVYK---EHRCVRTYYG 434 (1019)
Q Consensus 390 dg~~~--------------------------------vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~---~~~~~~~l~~ 434 (1019)
.|... +.+.+++| +..++++|..||.|.+|.--. .....+.+.=
T Consensus 171 ~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 171 SGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred CceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence 22111 11122333 347899999999999997422 2344566777
Q ss_pred ccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCc--------------
Q psy307 435 HRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDM-------------- 500 (1019)
Q Consensus 435 H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~-------------- 500 (1019)
|...|.+++|+++|.+|+|||..|.+-+|.+.+++...--+...++..+.++||+....+......
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t 329 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST 329 (792)
T ss_pred cccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence 999999999999999999999999999999999984444456788999999999886655111100
Q ss_pred ----eee----eCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEecccc------ccceEEEEEcCC
Q psy307 501 ----KYI----ADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMV------AGYACSLDFSPD 566 (1019)
Q Consensus 501 ----~~i----~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~------~~~V~~v~fspd 566 (1019)
.+. ......-.+.++++|.-+.++..+..|.|.+||+.+...+........+.. ...++.++.+-.
T Consensus 330 Isgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~ 409 (792)
T KOG1963|consen 330 ISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRF 409 (792)
T ss_pred ccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhcc
Confidence 000 111233356788999778888888999999999987654433333222211 134778888889
Q ss_pred CCEEEEEeC--------CC--eEEEEeCCCC----ceeeee-eccCCCEEEEEEcCCCCc-EEEEEeCCCcEEEEeccce
Q psy307 567 MSYLISGDA--------DG--KCYIWDWKTT----KLFKKW-KAHDGVCISTLWHPHEPS-KVVTAGWDAATAKVQDANI 630 (1019)
Q Consensus 567 g~~Lasgs~--------DG--~I~IWDl~t~----~~l~~l-~~h~~~V~sl~~sp~~~~-~l~s~s~Dg~I~iwwd~~i 630 (1019)
|.+++|+-. || .+++|-.... .+...+ ..|...+...++.+...+ ..+|+|.||.+++|--.+-
T Consensus 410 gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~ 489 (792)
T KOG1963|consen 410 GSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDD 489 (792)
T ss_pred ceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecc
Confidence 999998742 33 5788965432 333333 357766666665554434 8999999999988821110
Q ss_pred eeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHH
Q psy307 631 VKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTAD 710 (1019)
Q Consensus 631 ~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~ 710 (1019)
..+ +..+. .|+-+.....|+.++..++||.|++
T Consensus 490 ~n~------------------------------------------~k~~s---~W~c~~i~sy~k~~i~a~~fs~dGs-- 522 (792)
T KOG1963|consen 490 SNI------------------------------------------YKKSS---NWTCKAIGSYHKTPITALCFSQDGS-- 522 (792)
T ss_pred ccc------------------------------------------CcCcc---ceEEeeeeccccCcccchhhcCCCc--
Confidence 000 00000 0111111114678899999999994
Q ss_pred HHHhhcCCCchhhHHHHH-Hhhhe
Q psy307 711 DILSKLSDKNASLEEKTA-AEFYC 733 (1019)
Q Consensus 711 ~Ilt~~~d~~i~lw~~~~-~e~~~ 733 (1019)
+++.+-+++|.+|+--- .|..|
T Consensus 523 -lla~s~~~~Itiwd~~~~~~l~~ 545 (792)
T KOG1963|consen 523 -LLAVSFDDTITIWDYDTKNELLC 545 (792)
T ss_pred -EEEEecCCEEEEecCCChhhhhc
Confidence 88999999999999211 55544
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-14 Score=153.96 Aligned_cols=279 Identities=16% Similarity=0.180 Sum_probs=200.0
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC-----CcEEEEEe-cccCccEeEEEEcCCCCceeEEEeec
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-----ERRCVRTY-YGHRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~-----~~~~~~~~-~gh~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
.+-+.+|.+.|++|.|+.. +.+|++|+.|..+++|++.. ..+++... ..|...|.|++|....
T Consensus 49 qKD~~~H~GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N---------- 117 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN---------- 117 (609)
T ss_pred hhhhhhhccccceeeeccC-CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC----------
Confidence 3457899999999999995 99999999999999999842 22334333 2355889999998766
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCCCeEEEEEc--cccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCc----eEEEEe
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYY--GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGE----CISRFT 475 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~--~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~----~i~~~~ 475 (1019)
..+++|..+++|.+.|+. +.+.+..+. ...+.|..+..+|..+.|++.+.++.|.+||.+... ++....
T Consensus 118 ----~~~~SG~~~~~VI~HDiE-t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN 192 (609)
T KOG4227|consen 118 ----RFLYSGERWGTVIKHDIE-TKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN 192 (609)
T ss_pred ----eeEecCCCcceeEeeecc-cceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC
Confidence 689999999999999994 444444432 345699999999999999999999999999998654 333334
Q ss_pred cCCceEEEEEecCCCeeeec-----------cCCCceeeeCC--------CCCcccEEEEcCCCCEEEEEecCCeEEEEE
Q psy307 476 SRKVAYCVKFHPDEDKQHLD-----------IPVDMKYIADP--------TMHSMPAVTSSPNNKWLACQSMDNKILIFS 536 (1019)
Q Consensus 476 ~~~~v~~v~~~p~~~~~~~~-----------~~~~~~~i~~~--------~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd 536 (1019)
.++..+++.|+|....+++. +......+... ....-.++.|+|+|+.|++--....-.+||
T Consensus 193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D 272 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFD 272 (609)
T ss_pred CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEee
Confidence 55677889999987655441 11111111000 011224678999999998876666667788
Q ss_pred ccCcccccceeEEe-cccc-----ccceEEEEEcCCCCEEEEEeCCCeEEEEeCCC----------C-------------
Q psy307 537 ALNRFKLNRKKTFE-GHMV-----AGYACSLDFSPDMSYLISGDADGKCYIWDWKT----------T------------- 587 (1019)
Q Consensus 537 ~~~~~~~~~~~~l~-gh~~-----~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t----------~------------- 587 (1019)
+.... ...+. .|.. ...+.+++|-.|-. +++|+.+-.|++|.+.. |
T Consensus 273 ~~S~R----~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~ 347 (609)
T KOG4227|consen 273 FISQR----CFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIE 347 (609)
T ss_pred eeccc----ceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheec
Confidence 76532 12222 2222 23355677765544 99999999999998742 1
Q ss_pred ceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEecc
Q psy307 588 KLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDA 628 (1019)
Q Consensus 588 ~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~ 628 (1019)
+.+..+++|...++.+.|+|+. .+|++.|-.+.+++|.+-
T Consensus 348 ~~~~VLrGHRSv~NQVRF~~H~-~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 348 KELTVLRGHRSVPNQVRFSQHN-NLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ceeEEEecccccccceeecCCc-ceEeccchhhheeccccc
Confidence 2355789999999999999997 689999999999888543
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-13 Score=156.90 Aligned_cols=253 Identities=26% Similarity=0.490 Sum_probs=192.8
Q ss_pred eeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCc-cEeEEEE-cCCCCceeEEEeecCCCCcE
Q psy307 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQ-AVRDICF-NNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 330 ~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~-~V~~i~f-spdg~~~vs~i~~~p~~~~~ 407 (1019)
.+.+|...|.++.+.+. +..++.++.|+.+.+|+.......+..+.++.. .+..+.+ ++++. ..
T Consensus 60 ~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 125 (466)
T COG2319 60 LLRGHEDSITSIAFSPD-GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN-------------SI 125 (466)
T ss_pred eeeeccceEEEEEECCC-CcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcc-------------eE
Confidence 56789999999999995 788888999999999999555436666666443 6666666 55552 24
Q ss_pred EEEE-eCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc-CCeEEEEECCCCceEEEEecCCceEEEEE
Q psy307 408 LLSC-SMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY-DRYLKLWDTESGECISRFTSRKVAYCVKF 485 (1019)
Q Consensus 408 L~sg-s~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~-Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~ 485 (1019)
++.. ..|+.+.+|++.........+..|...|.+++|+|++..+++++. |+.+++|++..+..+..+..
T Consensus 126 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 196 (466)
T COG2319 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG--------- 196 (466)
T ss_pred EeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc---------
Confidence 5554 449999999995447888999999999999999999998888885 99999999998666655543
Q ss_pred ecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCC-EEEEEecCCeEEEEEccCccccccee-EEeccccccceEEEEE
Q psy307 486 HPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK-WLACQSMDNKILIFSALNRFKLNRKK-TFEGHMVAGYACSLDF 563 (1019)
Q Consensus 486 ~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~-~Lasgs~Dg~I~iwd~~~~~~~~~~~-~l~gh~~~~~V~~v~f 563 (1019)
+...+.+++++|++. .+++++.|+.|++||...+ .... .+.+|.... +. .|
T Consensus 197 ---------------------~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~-~~--~~ 249 (466)
T COG2319 197 ---------------------HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG---KLLRSTLSGHSDSV-VS--SF 249 (466)
T ss_pred ---------------------CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC---cEEeeecCCCCcce-eE--eE
Confidence 234456666677777 5555589999999987744 2333 567776332 32 89
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCce-eeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeee
Q psy307 564 SPDMSYLISGDADGKCYIWDWKTTKL-FKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIA 634 (1019)
Q Consensus 564 spdg~~Lasgs~DG~I~IWDl~t~~~-l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~ 634 (1019)
+|++.++++++.|+.+++|+...... +..+..|...+.++.|+|++ ..+++++.|+.+.+| +.......
T Consensus 250 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~-~~~~~~~~ 319 (466)
T COG2319 250 SPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLW-DLETGKLL 319 (466)
T ss_pred CCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCC-CEEEEeeCCCcEEEE-EcCCCceE
Confidence 99999999999999999999987665 55556788899999999976 466669999887776 65544433
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=6e-15 Score=165.08 Aligned_cols=231 Identities=17% Similarity=0.250 Sum_probs=171.5
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCc
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCR 416 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~ 416 (1019)
.|..++|-||+..+++.+ +..+.|||. +.+..+.++++|...|.+++|+.|| +.++||+.|..
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~-ndG~llqtLKgHKDtVycVAys~dG--------------krFASG~aDK~ 76 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDT-SDGTLLQPLKGHKDTVYCVAYAKDG--------------KRFASGSADKS 76 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeC-CCcccccccccccceEEEEEEccCC--------------ceeccCCCcee
Confidence 799999999866666554 468999999 6678899999999999999999999 79999999999
Q ss_pred EEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeecc
Q psy307 417 VKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDI 496 (1019)
Q Consensus 417 I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~ 496 (1019)
|.+|.....+.+ -..|...|.|+.|+|-...++|++.. ..-+|.........
T Consensus 77 VI~W~~klEG~L---kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K------------------------ 128 (1081)
T KOG1538|consen 77 VIIWTSKLEGIL---KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK------------------------ 128 (1081)
T ss_pred EEEeccccccee---eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh------------------------
Confidence 999987433322 24699999999999999999998864 34567654332111
Q ss_pred CCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCC-----CEEE
Q psy307 497 PVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM-----SYLI 571 (1019)
Q Consensus 497 ~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg-----~~La 571 (1019)
......+.+++|..||++++.|-.+|+|.+-+.....+. .+....|.. .+|.+++|+|.. ..++
T Consensus 129 --------~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~-~I~Rpgg~N--spiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 129 --------HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV-KIERPGGSN--SPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred --------hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce-EEeCCCCCC--CCceEEEecCCCCCCccceEE
Confidence 111234567889999999999999999999865543221 222222333 789999999964 3677
Q ss_pred EEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 572 SGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 572 sgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
..+...++.++.+ +|+.+..-+.-.-...|+.+.++| .+++.||.|+.+.++
T Consensus 198 V~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NG-Ey~LiGGsdk~L~~f 249 (1081)
T KOG1538|consen 198 VADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNG-EYILLGGSDKQLSLF 249 (1081)
T ss_pred EEeccceeEEEEe-cceeecccccCCCCchhheeccCC-cEEEEccCCCceEEE
Confidence 7777777777775 455555434334445789999998 588999999988665
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.1e-14 Score=167.21 Aligned_cols=287 Identities=16% Similarity=0.209 Sum_probs=192.2
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeecc---CCCCeEEEEEcC-CCCcEEEEeeCCCeEEEEecCCCc
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEG---HTKGISAIRWFP-KSAHLLLSCSMDCRVKLWEVYKER 369 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~g---H~~~V~~i~fsp-d~g~lLaSgs~Dg~I~IWdl~~~~ 369 (1019)
+.+-...++++.....|.+|+..... .+..|.. ....|+.+.+-. ++..++++|+.||.||||+-+...
T Consensus 1072 ~hpf~p~i~~ad~r~~i~vwd~e~~~-------~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1072 FHPFEPQIAAADDRERIRVWDWEKGR-------LLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred ecCCCceeEEcCCcceEEEEecccCc-------eeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 34445667777767889999887433 1222222 245789998765 356789999999999999875443
Q ss_pred ----EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEe
Q psy307 370 ----RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN 445 (1019)
Q Consensus 370 ----~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fs 445 (1019)
+.+..+ .++.++...+.|.. ..+.|....+.++++|. -..|+|||......+...-.+....|+++.-+
T Consensus 1145 ~~~~eLVTaw----~~Ls~~~~~~r~~~--~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~ 1217 (1387)
T KOG1517|consen 1145 WKKPELVTAW----SSLSDQLPGARGTG--LVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSAD 1217 (1387)
T ss_pred cCCceeEEee----ccccccCccCCCCC--eeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeeccc
Confidence 222222 22344444555544 34678777776666665 78999999955555555555666677777654
Q ss_pred c-CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCc--ccEEEEcCCCC-
Q psy307 446 N-TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHS--MPAVTSSPNNK- 521 (1019)
Q Consensus 446 p-dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~--i~~v~~spdg~- 521 (1019)
. .|+.|+.|..||.|++||.+....-. .......|... |..+.+.+.|-
T Consensus 1218 ~~~gn~i~AGfaDGsvRvyD~R~a~~ds---------------------------~v~~~R~h~~~~~Iv~~slq~~G~~ 1270 (1387)
T KOG1517|consen 1218 LVHGNIIAAGFADGSVRVYDRRMAPPDS---------------------------LVCVYREHNDVEPIVHLSLQRQGLG 1270 (1387)
T ss_pred ccCCceEEEeecCCceEEeecccCCccc---------------------------cceeecccCCcccceeEEeecCCCc
Confidence 3 46899999999999999987543210 00111122222 55666666554
Q ss_pred EEEEEecCCeEEEEEccCcccccceeEEecccccc-ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc----
Q psy307 522 WLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAG-YACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH---- 596 (1019)
Q Consensus 522 ~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~-~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h---- 596 (1019)
.|++|+.||.|++||++..... .......|-..| ..+++..+++...+|+|+. +.|.||++. |+.+..++.+
T Consensus 1271 elvSgs~~G~I~~~DlR~~~~e-~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1271 ELVSGSQDGDIQLLDLRMSSKE-TFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFM 1347 (1387)
T ss_pred ceeeeccCCeEEEEecccCccc-ccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccc
Confidence 4999999999999999975332 223333333223 4889999999999999999 999999975 4444444322
Q ss_pred ---CCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 597 ---DGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 597 ---~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.+.+.|++|||.. -++++|+.|.+|.++
T Consensus 1348 ~q~~gs~scL~FHP~~-~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHR-LLLAAGSADSTVSIY 1378 (1387)
T ss_pred cCcCCCcceeeecchh-HhhhhccCCceEEEe
Confidence 3568999999987 578888888887665
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.8e-14 Score=143.99 Aligned_cols=259 Identities=17% Similarity=0.261 Sum_probs=180.6
Q ss_pred cceeeeccCCCCeEEEEEc--CCCCcEEEEeeC----CCeEEEEecCCCcEEEEE--ecccCccEeEEEEcCCCCceeEE
Q psy307 326 TQVHTWEGHTKGISAIRWF--PKSAHLLLSCSM----DCRVKLWEVYKERRCVRT--YYGHRQAVRDICFNNTGTNFISA 397 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fs--pd~g~lLaSgs~----Dg~I~IWdl~~~~~~~~~--~~gh~~~V~~i~fspdg~~~vs~ 397 (1019)
+.+.++..|- .+.++.|+ |+....|+.||. .+.|.|-.+......+.. -..|.-+++.+.|.|+...
T Consensus 36 ~eiy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g---- 110 (364)
T KOG0290|consen 36 KEIYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKG---- 110 (364)
T ss_pred ceEEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccc----
Confidence 3455666554 67888888 445678998873 466777666432222211 2368888999999887631
Q ss_pred EeecCCCCcEEEEEeCCCcEEEEEccCCCe---EEEEE-----ccccccEeEEEEec-CCCEEEEEEcCCeEEEEECCCC
Q psy307 398 IRWFPKSAHLLLSCSMDCRVKLWEVYKEHR---CVRTY-----YGHRQAVRDICFNN-TGTNFISAGYDRYLKLWDTESG 468 (1019)
Q Consensus 398 i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~---~~~~l-----~~H~~~V~sl~fsp-dg~~l~S~s~Dg~I~lWDl~t~ 468 (1019)
..+.+|+++ +..+++|.+..... +...+ ..+.+++++..|+. +-++|.++|-|.+..|||++++
T Consensus 111 -----~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~ 183 (364)
T KOG0290|consen 111 -----VYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG 183 (364)
T ss_pred -----cCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeec
Confidence 122455554 45799999853221 11112 34668899999986 5567889999999999999987
Q ss_pred ce----EEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCccccc
Q psy307 469 EC----ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLN 544 (1019)
Q Consensus 469 ~~----i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~ 544 (1019)
.. .+-+.+.+.|+.++|... .-+.||+.+.||.+++||++.....
T Consensus 184 ~~~~vkTQLIAHDKEV~DIaf~~~------------------------------s~~~FASvgaDGSvRmFDLR~leHS- 232 (364)
T KOG0290|consen 184 VSGTVKTQLIAHDKEVYDIAFLKG------------------------------SRDVFASVGADGSVRMFDLRSLEHS- 232 (364)
T ss_pred cccceeeEEEecCcceeEEEeccC------------------------------ccceEEEecCCCcEEEEEecccccc-
Confidence 32 223345556666666432 1267899999999999999976432
Q ss_pred ceeEEeccccccceEEEEEcC-CCCEEEEEeCCC-eEEEEeCCC-CceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCc
Q psy307 545 RKKTFEGHMVAGYACSLDFSP-DMSYLISGDADG-KCYIWDWKT-TKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAA 621 (1019)
Q Consensus 545 ~~~~l~gh~~~~~V~~v~fsp-dg~~Lasgs~DG-~I~IWDl~t-~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~ 621 (1019)
...+.+.....+...++|++ |-+|+|+-..|+ .|.|.|++. +.++..+++|.+.|++++|.|+..+.+.|||.|..
T Consensus 233 -TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q 311 (364)
T KOG0290|consen 233 -TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ 311 (364)
T ss_pred -eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce
Confidence 23344444346788899988 556788766554 699999986 57789999999999999999999999999999987
Q ss_pred EEEEeccc
Q psy307 622 TAKVQDAN 629 (1019)
Q Consensus 622 I~iwwd~~ 629 (1019)
+.+ ||.+
T Consensus 312 ali-WDl~ 318 (364)
T KOG0290|consen 312 ALI-WDLQ 318 (364)
T ss_pred EEE-Eecc
Confidence 755 5544
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.2e-13 Score=152.37 Aligned_cols=279 Identities=8% Similarity=0.058 Sum_probs=173.7
Q ss_pred eeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEe-eCCCeEEEEecCCCcEE--EEEec
Q psy307 300 SFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSC-SMDCRVKLWEVYKERRC--VRTYY 376 (1019)
Q Consensus 300 ~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSg-s~Dg~I~IWdl~~~~~~--~~~~~ 376 (1019)
.+++...++.|.+|+..... ..+.+.++. +.+....++++|+ +++|+++ ..++.|.+|++...+.. +....
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g----~l~~~~~~~-~~~~~~~l~~spd-~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~ 77 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEG----ALTLLQVVD-VPGQVQPMVISPD-KRHLYVGVRPEFRVLSYRIADDGALTFAAESP 77 (330)
T ss_pred EEEEcCCCCCEEEEEECCCC----ceeeeeEEe-cCCCCccEEECCC-CCEEEEEECCCCcEEEEEECCCCceEEeeeec
Confidence 45666789999999885211 113455554 3456778999996 5665554 56899999999533322 22221
Q ss_pred ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe-CCCcEEEEEccCCCe---EEEEEccccccEeEEEEecCCCEEE
Q psy307 377 GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS-MDCRVKLWEVYKEHR---CVRTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 377 gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs-~Dg~I~IWDl~~~~~---~~~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
.......++|+|++ ++|++++ .++.|.+|++...+. .+..+. +.....+++++|++++++
T Consensus 78 -~~~~p~~i~~~~~g--------------~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~ 141 (330)
T PRK11028 78 -LPGSPTHISTDHQG--------------RFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLW 141 (330)
T ss_pred -CCCCceEEEECCCC--------------CEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEE
Confidence 22345678888887 4555544 589999999964332 223222 233466788999999886
Q ss_pred EEE-cCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec-CC
Q psy307 453 SAG-YDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM-DN 530 (1019)
Q Consensus 453 S~s-~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~-Dg 530 (1019)
+++ .++.|.+||+.+...+...... ....+.......++|+|+|+++++.+. ++
T Consensus 142 v~~~~~~~v~v~d~~~~g~l~~~~~~------------------------~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~ 197 (330)
T PRK11028 142 VPCLKEDRIRLFTLSDDGHLVAQEPA------------------------EVTTVEGAGPRHMVFHPNQQYAYCVNELNS 197 (330)
T ss_pred EeeCCCCEEEEEEECCCCcccccCCC------------------------ceecCCCCCCceEEECCCCCEEEEEecCCC
Confidence 555 5699999999763322100000 000001123456889999999988776 89
Q ss_pred eEEEEEccCc-ccccceeEEeccc----cccceEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCc----eeeeeeccCCCE
Q psy307 531 KILIFSALNR-FKLNRKKTFEGHM----VAGYACSLDFSPDMSYLISGDA-DGKCYIWDWKTTK----LFKKWKAHDGVC 600 (1019)
Q Consensus 531 ~I~iwd~~~~-~~~~~~~~l~gh~----~~~~V~~v~fspdg~~Lasgs~-DG~I~IWDl~t~~----~l~~l~~h~~~V 600 (1019)
+|.+|++... ..+.....+.... ...+...+.++|+|++++++.. ++.|.+|++.+.. .+..+... ...
T Consensus 198 ~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p 276 (330)
T PRK11028 198 SVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQP 276 (330)
T ss_pred EEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccC
Confidence 9999999742 1222233332211 1123456899999999988854 7899999986543 22332221 234
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 601 ISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 601 ~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
..+.++|+|..++++...+++|.+|
T Consensus 277 ~~~~~~~dg~~l~va~~~~~~v~v~ 301 (330)
T PRK11028 277 RGFNIDHSGKYLIAAGQKSHHISVY 301 (330)
T ss_pred CceEECCCCCEEEEEEccCCcEEEE
Confidence 6789999996555555558888776
|
|
| >KOG2999|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-16 Score=174.31 Aligned_cols=115 Identities=57% Similarity=0.944 Sum_probs=111.1
Q ss_pred HHHHhhheeeeeeeccchhhhhhchhhhHHHHHHHHhhhhhhhhcCchhhHHHHhccccccHHHHHHHhhccccchhhhh
Q psy307 726 KTAAEFYCICIVLLNKTWKEMRATTEDFVKVFSVVREQITRALSSQPASLDKFRANISRLTYSEITNLWQQERTSREEWE 805 (1019)
Q Consensus 726 ~~~~e~~~~~i~~~~~~~~~~~a~l~~fvkv~s~v~~~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 805 (1019)
++|+||||+|++.++++|+||.|+-++|-||++||++|++++|...|.+|+.|....+.++|.+++.++|+||.+.++++
T Consensus 434 ~~Fee~FciciqLlnkTWKEMrAt~edf~KVmqVVrEQl~r~L~~kp~sld~fkskl~~lsY~eil~irqsErl~qEd~~ 513 (713)
T KOG2999|consen 434 TPFEELFCICVQLLNRTWKEMRATAEDFEKVMQVVREQLRRALKRKPQSLDQFKSKLETLSYREILRIRQSERLSQEDFQ 513 (713)
T ss_pred CcHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhccHHHHHHHHHHHhhcccccc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999776
Q ss_pred cccccHHHHHhhchHHHHHHHHHHhhcceecCceecc
Q psy307 806 SHAKPIVELKELITPEIVDLIQQQRLGYLVEGTRFTK 842 (1019)
Q Consensus 806 ~~~~~~~lln~l~~~ei~~~i~~~~l~~li~~~~~~~ 842 (1019)
. +||.+|++.|+|||+++|+|++|++|++|+.|+|
T Consensus 514 s--~pIleLkeKi~PeilELIkqqrLnrL~eGt~FRK 548 (713)
T KOG2999|consen 514 S--PPILELKEKIQPEILELIKQQRLNRLVEGTVFRK 548 (713)
T ss_pred C--chHHHHHHhcCHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4 5999999999999999999999999999999988
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-13 Score=144.43 Aligned_cols=254 Identities=21% Similarity=0.307 Sum_probs=172.4
Q ss_pred EEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE-----------EEEec-ccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 340 AIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC-----------VRTYY-GHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 340 ~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~-----------~~~~~-gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
.+.|+|| |..|++-+.|..+.+|++....-. ...+. .....|.+.+|-+-- .-...+..+
T Consensus 54 gckWSPD-GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M-------~s~qP~t~l 125 (406)
T KOG2919|consen 54 GCKWSPD-GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRM-------KSDQPSTNL 125 (406)
T ss_pred cceeCCC-CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeecc-------ccCCCccce
Confidence 4789996 889999999999999998421100 00000 011233344333210 001223468
Q ss_pred EEEEeCCCcEEEEEccCCCeEEEEEcc--ccc---cEeEEEEecCCCEEEEEEcCCeEEEEEC-CCCceEEEEecCCceE
Q psy307 408 LLSCSMDCRVKLWEVYKEHRCVRTYYG--HRQ---AVRDICFNNTGTNFISAGYDRYLKLWDT-ESGECISRFTSRKVAY 481 (1019)
Q Consensus 408 L~sgs~Dg~I~IWDl~~~~~~~~~l~~--H~~---~V~sl~fspdg~~l~S~s~Dg~I~lWDl-~t~~~i~~~~~~~~v~ 481 (1019)
+++.+.+.-|++||. .+++....+.+ |.. ...+++|+|||.+|++| +.++|+++|+ +.|.--.....
T Consensus 126 ~a~ssr~~PIh~wda-ftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t----- 198 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDA-FTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTT----- 198 (406)
T ss_pred eeeccccCceeeeec-cccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhh-----
Confidence 999999999999999 66666665544 332 45689999999998754 7889999999 66642211110
Q ss_pred EEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC-CEEEEEecCCeEEEEEccCcccccceeEEeccccccceEE
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN-KWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg-~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~ 560 (1019)
.+. -.....+-+.+++++|-. +.+++|+....+-||.-.+. .....+.+|. +.|+.
T Consensus 199 --~~~----------------~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~---~pl~llggh~--gGvTh 255 (406)
T KOG2919|consen 199 --VTK----------------GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR---RPLQLLGGHG--GGVTH 255 (406)
T ss_pred --hhc----------------ccccccceeeeeeccCCCCcceeeecccceeeeEecCCC---CceeeecccC--CCeee
Confidence 000 001112345567777754 58999999999988877666 4457777887 77999
Q ss_pred EEEcCCCCEEEEEeC-CCeEEEEeCCC-CceeeeeeccCC---CEEEEEEcCCCCcEEEEEeCCCcEEEEeccceee
Q psy307 561 LDFSPDMSYLISGDA-DGKCYIWDWKT-TKLFKKWKAHDG---VCISTLWHPHEPSKVVTAGWDAATAKVQDANIVK 632 (1019)
Q Consensus 561 v~fspdg~~Lasgs~-DG~I~IWDl~t-~~~l~~l~~h~~---~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~k 632 (1019)
++|.++|+.|.+|.. |-.|..||++. +.++..+..|.+ .-+-....|++ .+|++|+.||.|.+|...+.+.
T Consensus 256 L~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 256 LQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred EEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCCCCC
Confidence 999999999999975 66899999975 566777777765 23345567777 6999999999998886666544
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.5e-14 Score=151.50 Aligned_cols=204 Identities=17% Similarity=0.294 Sum_probs=153.9
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC------eEEEEEccccccEeEEEEec
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH------RCVRTYYGHRQAVRDICFNN 446 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~------~~~~~l~~H~~~V~sl~fsp 446 (1019)
-.+.||+++|.+++|+|-.. +.|+|||.|.+|.||++...+ .++..+.+|...|-.++|+|
T Consensus 75 P~v~GHt~~vLDi~w~PfnD-------------~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHP 141 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFND-------------CVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHP 141 (472)
T ss_pred CCccCccccccccccCccCC-------------ceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecc
Confidence 34679999999998877553 799999999999999995443 56888999999999999999
Q ss_pred CC-CEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEE
Q psy307 447 TG-TNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLAC 525 (1019)
Q Consensus 447 dg-~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Las 525 (1019)
.. +.|+|++.|.+|.+||+.+|+.+-++.+... |.+++|+.+|.+|++
T Consensus 142 tA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~-------------------------------i~S~sfn~dGs~l~T 190 (472)
T KOG0303|consen 142 TAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDM-------------------------------VYSMSFNRDGSLLCT 190 (472)
T ss_pred cchhhHhhccCCceEEEEeccCCceeeecCCCCe-------------------------------EEEEEeccCCceeee
Confidence 75 4588999999999999999987766654444 445566778899999
Q ss_pred EecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCc---eeeeeeccCCC
Q psy307 526 QSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD---ADGKCYIWDWKTTK---LFKKWKAHDGV 599 (1019)
Q Consensus 526 gs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs---~DG~I~IWDl~t~~---~l~~l~~h~~~ 599 (1019)
.+.|..|+|||.+.+..+. .-.+|.... ...+.|-.+|.++.+|- ++..+-+||...-. .+..+...+|
T Consensus 191 tckDKkvRv~dpr~~~~v~---e~~~heG~k-~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnG- 265 (472)
T KOG0303|consen 191 TCKDKKVRVIDPRRGTVVS---EGVAHEGAK-PARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNG- 265 (472)
T ss_pred ecccceeEEEcCCCCcEee---ecccccCCC-cceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCc-
Confidence 9999999999999885543 334554323 44577888998555553 46789999976543 2444444443
Q ss_pred EEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 600 CISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 600 V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
|.---|.++..-..++|-.|+.|+.+
T Consensus 266 vl~PFyD~dt~ivYl~GKGD~~IRYy 291 (472)
T KOG0303|consen 266 VLLPFYDPDTSIVYLCGKGDSSIRYF 291 (472)
T ss_pred eEEeeecCCCCEEEEEecCCcceEEE
Confidence 55555788775555666688888776
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.1e-14 Score=144.38 Aligned_cols=245 Identities=18% Similarity=0.332 Sum_probs=170.7
Q ss_pred cCCCCeEEEEEcCCC----CcEEEEeeCCCeEEEEecCCCcEEE---EEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 333 GHTKGISAIRWFPKS----AHLLLSCSMDCRVKLWEVYKERRCV---RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 333 gH~~~V~~i~fspd~----g~lLaSgs~Dg~I~IWdl~~~~~~~---~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
.|.-+++.+.|.|+. ..+|||++ -.+|+|.+......+ ..+..+. ..+-..-+++..|+.-++
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~k--------ns~~~aPlTSFDWne~dp 163 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNK--------NSEFCAPLTSFDWNEVDP 163 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCc--------ccccCCcccccccccCCc
Confidence 477789999999974 34676654 479999985322111 1111111 111112345566777778
Q ss_pred cEEEEEeCCCcEEEEEccCC--CeEEEEEccccccEeEEEEecCCC-EEEEEEcCCeEEEEECCCCceEEEEecCCceEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKE--HRCVRTYYGHRQAVRDICFNNTGT-NFISAGYDRYLKLWDTESGECISRFTSRKVAYC 482 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~--~~~~~~l~~H~~~V~sl~fspdg~-~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~ 482 (1019)
++|.++|-|.+..|||+..+ +.....+-+|...|..|+|...+. .|+|+|.||.||++|++.-+--..+-..
T Consensus 164 ~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~----- 238 (364)
T KOG0290|consen 164 NLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED----- 238 (364)
T ss_pred ceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecC-----
Confidence 99999999999999999764 446778899999999999998654 5999999999999999865422211110
Q ss_pred EEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC-CCEEEEEecC-CeEEEEEccCcccccceeEEeccccccceEE
Q psy307 483 VKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN-NKWLACQSMD-NKILIFSALNRFKLNRKKTFEGHMVAGYACS 560 (1019)
Q Consensus 483 v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd-g~~Lasgs~D-g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~ 560 (1019)
.....+...++|++. -+++|+-..| ..|.|.|++... ..+..+.+|. +.|+.
T Consensus 239 ----------------------p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~--tpva~L~~H~--a~VNg 292 (364)
T KOG0290|consen 239 ----------------------PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC--TPVARLRNHQ--ASVNG 292 (364)
T ss_pred ----------------------CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC--cceehhhcCc--ccccc
Confidence 001233445566554 3566665554 589999998643 4577889998 78999
Q ss_pred EEEcCC-CCEEEEEeCCCeEEEEeCCCCc------eeeeeeccCCCEEEEEEcCCCCcEEEEEeCC
Q psy307 561 LDFSPD-MSYLISGDADGKCYIWDWKTTK------LFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619 (1019)
Q Consensus 561 v~fspd-g~~Lasgs~DG~I~IWDl~t~~------~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~D 619 (1019)
++|.|. +..|++++.|..+.|||+.+-- ++-.+. ..+.|+.+.|++..+.+++.+...
T Consensus 293 IaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 293 IAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred eEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence 999995 4689999999999999997532 222233 456899999998877777776543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-13 Score=161.59 Aligned_cols=237 Identities=12% Similarity=0.146 Sum_probs=159.9
Q ss_pred CCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCC---CeEEEEecCCCc-EEEEEecccCccE
Q psy307 307 DVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMD---CRVKLWEVYKER-RCVRTYYGHRQAV 382 (1019)
Q Consensus 307 D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~D---g~I~IWdl~~~~-~~~~~~~gh~~~V 382 (1019)
+..+.+|+..+.. .+.+..|...|.+.+|+|+ |+.|+.++.+ ..|.+||+..+. +.+..+.+|.
T Consensus 183 ~~~i~i~d~dg~~--------~~~lt~~~~~v~~p~wSPD-G~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~--- 250 (429)
T PRK01742 183 PYEVRVADYDGFN--------QFIVNRSSQPLMSPAWSPD-GSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN--- 250 (429)
T ss_pred eEEEEEECCCCCC--------ceEeccCCCccccceEcCC-CCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---
Confidence 4677777665322 3567788889999999997 5566655543 479999995433 2344444443
Q ss_pred eEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEE-cCCeEE
Q psy307 383 RDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG-YDRYLK 461 (1019)
Q Consensus 383 ~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s-~Dg~I~ 461 (1019)
..++|+|||. .++++.+.+|.+.||.+.........+..+...+.+..|+|||+.|+.++ .++...
T Consensus 251 ~~~~wSPDG~-------------~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~ 317 (429)
T PRK01742 251 GAPAFSPDGS-------------RLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQ 317 (429)
T ss_pred CceeECCCCC-------------EEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCce
Confidence 3578888883 33444557887777655333334455667777888999999999877665 578888
Q ss_pred EEECCCCce-EEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCc
Q psy307 462 LWDTESGEC-ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNR 540 (1019)
Q Consensus 462 lWDl~t~~~-i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~ 540 (1019)
||++..... ...+. +.. ....|+|+|++|+..+.++ +.+||+.++
T Consensus 318 I~~~~~~~~~~~~l~-------------------------------~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g 363 (429)
T PRK01742 318 VYRMSASGGGASLVG-------------------------------GRG--YSAQISADGKTLVMINGDN-VVKQDLTSG 363 (429)
T ss_pred EEEEECCCCCeEEec-------------------------------CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCC
Confidence 887643211 11110 001 2356899999998887754 556998776
Q ss_pred ccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeC--CCCceeeeeeccCCCEEEEEEcCCC
Q psy307 541 FKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDW--KTTKLFKKWKAHDGVCISTLWHPHE 609 (1019)
Q Consensus 541 ~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl--~t~~~l~~l~~h~~~V~sl~~sp~~ 609 (1019)
... .+.... ...++.|+|||++|+.++.+|.+.+|++ .+|+.+..+.+|.+.+...+|+|--
T Consensus 364 ~~~----~lt~~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 364 STE----VLSSTF---LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred CeE----EecCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCCC
Confidence 321 121111 1235789999999999999998888876 4688888999999989999999853
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-13 Score=141.80 Aligned_cols=231 Identities=18% Similarity=0.306 Sum_probs=164.3
Q ss_pred CCCeEEEEecCCCcEE--EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC-------CcEEEEEccCCC
Q psy307 356 MDCRVKLWEVYKERRC--VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD-------CRVKLWEVYKEH 426 (1019)
Q Consensus 356 ~Dg~I~IWdl~~~~~~--~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D-------g~I~IWDl~~~~ 426 (1019)
.|+.|.+-++...+.. ...+..|.+.|..|+-+|-.+ .+|+++..+ ..+.||.+....
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~-------------~ilaT~yn~~s~s~vl~~aaiw~ipe~~ 104 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQ-------------RILATVYNDTSDSGVLTGAAIWQIPEPL 104 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCC-------------ceEEEEEeccCCCcceeeEEEEeccccc
Confidence 3566666655433222 234666778888888777664 455554432 246799985433
Q ss_pred e--------EEEEEc-cccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCce-EEEEecCCceEEEEEecCCCeeeecc
Q psy307 427 R--------CVRTYY-GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGEC-ISRFTSRKVAYCVKFHPDEDKQHLDI 496 (1019)
Q Consensus 427 ~--------~~~~l~-~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~-i~~~~~~~~v~~v~~~p~~~~~~~~~ 496 (1019)
. ++..+. .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+....
T Consensus 105 ~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~------------------ 165 (370)
T KOG1007|consen 105 GQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSE------------------ 165 (370)
T ss_pred CccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccc------------------
Confidence 2 233343 4667999999999999998776 89999999987654 22222111
Q ss_pred CCCceeeeCCCCCcccEEEEcC--CCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCC-EEEEE
Q psy307 497 PVDMKYIADPTMHSMPAVTSSP--NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMS-YLISG 573 (1019)
Q Consensus 497 ~~~~~~i~~~~~~~i~~v~~sp--dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~-~Lasg 573 (1019)
...+.+..++-+|+| +|+.+++.+ |+++..||+++......+..-.|+ .|..+.|.|+.+ +|++|
T Consensus 166 -------s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq----~vrdlDfNpnkq~~lvt~ 233 (370)
T KOG1007|consen 166 -------SAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQ----RVRDLDFNPNKQHILVTC 233 (370)
T ss_pred -------cccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcc----eeeeccCCCCceEEEEEc
Confidence 001234455667777 678877764 899999999987655544444444 388999999877 57899
Q ss_pred eCCCeEEEEeCCC-CceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccce
Q psy307 574 DADGKCYIWDWKT-TKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANI 630 (1019)
Q Consensus 574 s~DG~I~IWDl~t-~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i 630 (1019)
+.||.|+|||.+. ..++..+.+|...|+++.|+|.-..+|+|+|.|..|.+|.-..+
T Consensus 234 gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 234 GDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred CCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccc
Confidence 9999999999976 45789999999999999999988899999999999977754443
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-13 Score=165.33 Aligned_cols=258 Identities=18% Similarity=0.200 Sum_probs=171.2
Q ss_pred cCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC------cEEEEEecccCccEeEEEEcCCCCcee
Q psy307 322 FLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE------RRCVRTYYGHRQAVRDICFNNTGTNFI 395 (1019)
Q Consensus 322 ~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~------~~~~~~~~gh~~~V~~i~fspdg~~~v 395 (1019)
...+..+..+..|+..|..++.+++.+.+++|||.||+||+|+...- .++..++.--...+.++...+.+
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~---- 1110 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG---- 1110 (1431)
T ss_pred CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC----
Confidence 34567899999999999999999987799999999999999998421 12223333334555555555555
Q ss_pred EEEeecCCCCcEEEEEeCCCcEEEEEccCCC------eEEEEEcccc-ccEeE-EEEecC-CC-EEEEEEcCCeEEEEEC
Q psy307 396 SAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH------RCVRTYYGHR-QAVRD-ICFNNT-GT-NFISAGYDRYLKLWDT 465 (1019)
Q Consensus 396 s~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~------~~~~~l~~H~-~~V~s-l~fspd-g~-~l~S~s~Dg~I~lWDl 465 (1019)
+.++.|+.||.|++.++.... .+.+....+. +.+.+ -+|... +. .++.+..-+.|..||+
T Consensus 1111 ----------~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~ 1180 (1431)
T KOG1240|consen 1111 ----------DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDT 1180 (1431)
T ss_pred ----------CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecc
Confidence 678888999999999996521 1222222222 33333 344332 33 5777888899999999
Q ss_pred CCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccc
Q psy307 466 ESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNR 545 (1019)
Q Consensus 466 ~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~ 545 (1019)
++...+.+++. .+..+.|++++.+|.+.++++|+..|.+.+||++-+..+
T Consensus 1181 r~~~~~w~lk~----------------------------~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i-- 1230 (1431)
T KOG1240|consen 1181 RMRHDAWRLKN----------------------------QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPI-- 1230 (1431)
T ss_pred hhhhhHHhhhc----------------------------CccccceeEEEecCCceEEEEecCCceEEEEEeecCcee--
Confidence 87655444332 223467889999999999999999999999999865322
Q ss_pred eeEEeccccccceEEEEEcC---CCCEEEEEe--CCCeEEEEeCCCCceeeeeeccCC-------------------CEE
Q psy307 546 KKTFEGHMVAGYACSLDFSP---DMSYLISGD--ADGKCYIWDWKTTKLFKKWKAHDG-------------------VCI 601 (1019)
Q Consensus 546 ~~~l~gh~~~~~V~~v~fsp---dg~~Lasgs--~DG~I~IWDl~t~~~l~~l~~h~~-------------------~V~ 601 (1019)
.... |....++..+..+| .....++++ ..+.|.+|++.+|....++...++ ...
T Consensus 1231 -~sw~-~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~ 1308 (1431)
T KOG1240|consen 1231 -LSWE-HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGI 1308 (1431)
T ss_pred -eccc-CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccce
Confidence 2221 11125566666655 334555544 467899999999876665543311 111
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 602 STLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 602 sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
.+.+. +++..+++||.|+.|+.|.
T Consensus 1309 ~~~~~-~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1309 SCGVC-EKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred eeecc-cCCceeeecCCccceeecc
Confidence 22222 2335899999999998763
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.1e-14 Score=153.30 Aligned_cols=153 Identities=18% Similarity=0.307 Sum_probs=122.4
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeee-ccCCCCeEEEEEcCCC-CcEEEEeeCCCeEEEEecCC---
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTW-EGHTKGISAIRWFPKS-AHLLLSCSMDCRVKLWEVYK--- 367 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l-~gH~~~V~~i~fspd~-g~lLaSgs~Dg~I~IWdl~~--- 367 (1019)
.+..+|..+++|+.|..+.+|+.. ..|+++.+ +||+..|.++.|-|.. ..+++||+.|..|+++|+..
T Consensus 57 eWn~dG~lL~SGSDD~r~ivWd~~-------~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~ 129 (758)
T KOG1310|consen 57 EWNADGELLASGSDDTRLIVWDPF-------EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKE 129 (758)
T ss_pred eecCCCCEEeecCCcceEEeecch-------hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccc
Confidence 588999999999999999999764 23555555 7999999999999964 56889999999999999953
Q ss_pred ------CcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEc--------
Q psy307 368 ------ERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYY-------- 433 (1019)
Q Consensus 368 ------~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~-------- 433 (1019)
.....+.+..|...|..|+..|+++ +.+.+++.||+|+-+|++....+-....
T Consensus 130 ~~~d~~~~~~~~~~~cht~rVKria~~p~~P-------------htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny 196 (758)
T KOG1310|consen 130 GGMDHGMEETTRCWSCHTDRVKRIATAPNGP-------------HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY 196 (758)
T ss_pred cccccCccchhhhhhhhhhhhhheecCCCCC-------------ceEEEecCCcceeeecccCCccCCccccccHHHHHh
Confidence 2344566778999999998888875 8899999999999999977544433222
Q ss_pred -cccccEeEEEEecCCC-EEEEEEcCCeEEEEEC
Q psy307 434 -GHRQAVRDICFNNTGT-NFISAGYDRYLKLWDT 465 (1019)
Q Consensus 434 -~H~~~V~sl~fspdg~-~l~S~s~Dg~I~lWDl 465 (1019)
..--...|+..+|... +|+.|+.|-..++||.
T Consensus 197 ~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 197 NPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred chhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 2224567889999665 5889999999999994
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.3e-13 Score=138.48 Aligned_cols=246 Identities=17% Similarity=0.201 Sum_probs=190.0
Q ss_pred eeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC--cEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE--RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 330 ~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~--~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
.+.--..+|+|.+|++| +..+|.+.....|.|+..... .+..+++..|...|+.|+|+|.+ +.
T Consensus 5 ~~~~~~~pitchAwn~d-rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s--------------nr 69 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSD-RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS--------------NR 69 (361)
T ss_pred EeeeccCceeeeeecCC-CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC--------------Cc
Confidence 33334568999999996 889999999999999988543 36788999999999999999988 68
Q ss_pred EEEEeCCCcEEEEEccCCC--eEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEE
Q psy307 408 LLSCSMDCRVKLWEVYKEH--RCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKF 485 (1019)
Q Consensus 408 L~sgs~Dg~I~IWDl~~~~--~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~ 485 (1019)
|++|+.|..-+||....++ ++...+..|+..++++.|+|.++.|++||.-+.|.||=++...--.
T Consensus 70 Ivtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWW------------- 136 (361)
T KOG1523|consen 70 IVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWW------------- 136 (361)
T ss_pred eeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccccee-------------
Confidence 9999999999999985544 3556677899999999999999999999999999998765432110
Q ss_pred ecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCccc--------------cc-ceeEEe
Q psy307 486 HPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFK--------------LN-RKKTFE 550 (1019)
Q Consensus 486 ~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~--------------~~-~~~~l~ 550 (1019)
..+.+..+....|+++.|+|++-+|++||.|+..+||..--+.. .. ....+.
T Consensus 137 -------------VsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~ 203 (361)
T KOG1523|consen 137 -------------VSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS 203 (361)
T ss_pred -------------hhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc
Confidence 12234456667889999999999999999999999997531100 00 001111
Q ss_pred ccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeeeeeccCCCEEEEEEcCCCCcEEEEEeCCC
Q psy307 551 GHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK-LFKKWKAHDGVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 551 gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~-~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
...+++..+.|+|+|..|+-.+.|+++.+=|..... .+.......-+..++.|-... .++.+|.|.
T Consensus 204 --~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~--~vv~ag~~c 270 (361)
T KOG1523|consen 204 --SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN--SVVAAGYDC 270 (361)
T ss_pred --cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC--ceeecCCCC
Confidence 345889999999999999999999999999976654 344444444678888887653 577778773
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-12 Score=153.76 Aligned_cols=249 Identities=17% Similarity=0.211 Sum_probs=174.5
Q ss_pred CCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeE-----EEE
Q psy307 357 DCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRC-----VRT 431 (1019)
Q Consensus 357 Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~-----~~~ 431 (1019)
++.+.||++.....+...+. -...|+++.|+| .++++++.|+.+|.|.+||++..... ...
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p-------------~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~ 286 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCP-------------FDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSAL 286 (555)
T ss_pred CceEEEEecCCCCCceEEEe-cCCceeEEEecc-------------CCcceEEeeccCceEEEEEccCCCCCCCcccccc
Confidence 35799999965544433333 234566665555 44589999999999999999766552 222
Q ss_pred EccccccEeEEEEecCCCE--EEEEEcCCeEEEEECCCCce-E-----E-------EEecCCceEEEEEecCCCeeee-c
Q psy307 432 YYGHRQAVRDICFNNTGTN--FISAGYDRYLKLWDTESGEC-I-----S-------RFTSRKVAYCVKFHPDEDKQHL-D 495 (1019)
Q Consensus 432 l~~H~~~V~sl~fspdg~~--l~S~s~Dg~I~lWDl~t~~~-i-----~-------~~~~~~~v~~v~~~p~~~~~~~-~ 495 (1019)
...|..+|+.+.|..+..- |+++|.||.|..|+++.-.. . . .......+.+++|.+......+ +
T Consensus 287 ~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVG 366 (555)
T KOG1587|consen 287 EVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVG 366 (555)
T ss_pred cccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEE
Confidence 3568999999999876544 99999999999999865332 1 1 1112235678888876554433 1
Q ss_pred c-------------CCCc------eeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEcc-CcccccceeEEeccccc
Q psy307 496 I-------------PVDM------KYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSAL-NRFKLNRKKTFEGHMVA 555 (1019)
Q Consensus 496 ~-------------~~~~------~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~-~~~~~~~~~~l~gh~~~ 555 (1019)
. .... ......+.+.|.++.++|-+..++..+.|.+++||... .. .++..+..+.
T Consensus 367 Te~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~---~Pl~~~~~~~-- 441 (555)
T KOG1587|consen 367 TEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA---SPLLSLDSSP-- 441 (555)
T ss_pred cCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC---Ccchhhhhcc--
Confidence 1 1111 12334466788899999988777666669999999876 33 2233444443
Q ss_pred cceEEEEEcCCC-CEEEEEeCCCeEEEEeCCC--CceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 556 GYACSLDFSPDM-SYLISGDADGKCYIWDWKT--TKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 556 ~~V~~v~fspdg-~~Lasgs~DG~I~IWDl~t--~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.++++++|||.. ..+++++.||.|.|||+.. ..++.+.+.+....+.+.|++.+ ..++.|...|++.++
T Consensus 442 ~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g-~~lavGd~~G~~~~~ 513 (555)
T KOG1587|consen 442 DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNG-KLLAVGDANGTTHIL 513 (555)
T ss_pred ceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCC-cEEEEecCCCcEEEE
Confidence 669999999965 4688899999999999864 35566666666677788888877 699999999999776
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.7e-14 Score=150.29 Aligned_cols=195 Identities=22% Similarity=0.301 Sum_probs=143.7
Q ss_pred eEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEE
Q psy307 383 RDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKL 462 (1019)
Q Consensus 383 ~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~l 462 (1019)
..++|+.+| ..+++|+.||++|||+. .....+.....|.+.|.++.|+|||+.|++.+.| ..+|
T Consensus 148 k~vaf~~~g--------------s~latgg~dg~lRv~~~-Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~V 211 (398)
T KOG0771|consen 148 KVVAFNGDG--------------SKLATGGTDGTLRVWEW-PSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARV 211 (398)
T ss_pred eEEEEcCCC--------------CEeeeccccceEEEEec-CcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEE
Confidence 678888888 68999999999999997 4555566678899999999999999999999999 9999
Q ss_pred EECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC-----CEEEEEecCCeEEEEEc
Q psy307 463 WDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN-----KWLACQSMDNKILIFSA 537 (1019)
Q Consensus 463 WDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg-----~~Lasgs~Dg~I~iwd~ 537 (1019)
|++++|.++......... .....+.|+.++ ..++.....+.|+.|++
T Consensus 212 W~~~~g~~~a~~t~~~k~----------------------------~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~ 263 (398)
T KOG0771|consen 212 WSVNTGAALARKTPFSKD----------------------------EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDI 263 (398)
T ss_pred EEeccCchhhhcCCcccc----------------------------hhhhhceecccCCCceEEEEEecCCCCceeEEEe
Confidence 999999776655421110 011122233222 22233334456666665
Q ss_pred cCccc---ccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee-eccCCCEEEEEEcCCCCcEE
Q psy307 538 LNRFK---LNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKW-KAHDGVCISTLWHPHEPSKV 613 (1019)
Q Consensus 538 ~~~~~---~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l-~~h~~~V~sl~~sp~~~~~l 613 (1019)
..... +...+....+ ..|++++.|+||++++.|+.||.|-|++..+.+.++-. ++|.+.|+.+.|+|+. +.+
T Consensus 264 ~~w~~~~~l~~~~~~~~~---~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds-r~~ 339 (398)
T KOG0771|consen 264 SLWSGSNFLRLRKKIKRF---KSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS-RYL 339 (398)
T ss_pred eeeccccccchhhhhhcc---CcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCc-Ccc
Confidence 43211 1111222223 35899999999999999999999999999998887766 5899999999999988 688
Q ss_pred EEEeCCCcEEEE
Q psy307 614 VTAGWDAATAKV 625 (1019)
Q Consensus 614 ~s~s~Dg~I~iw 625 (1019)
++.+.|..+.+.
T Consensus 340 ~svSs~~~~~v~ 351 (398)
T KOG0771|consen 340 ASVSSDNEAAVT 351 (398)
T ss_pred cccccCCceeEE
Confidence 889988877554
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.8e-14 Score=155.18 Aligned_cols=236 Identities=15% Similarity=0.231 Sum_probs=164.8
Q ss_pred CCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc------EEEEEecccCc
Q psy307 307 DVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER------RCVRTYYGHRQ 380 (1019)
Q Consensus 307 D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~------~~~~~~~gh~~ 380 (1019)
.|.|-+++...+.+ +|-..+-.+. ....|+.+.|.|-+.+.|+.++.||.|+||.+..++ .....+.+|..
T Consensus 602 gG~iai~el~~PGr--LPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGR--LPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred CceEEEEEcCCCCC--CCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 46677777665443 4443333332 234799999999889999999999999999985432 34456788888
Q ss_pred cEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeE
Q psy307 381 AVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYL 460 (1019)
Q Consensus 381 ~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I 460 (1019)
.|.++.|+|-. .+.|++++.|.+|++||+ ........+.+|++.|.+++|||+|+.+++.+.||+|
T Consensus 679 KI~slRfHPLA-------------advLa~asyd~Ti~lWDl-~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~ 744 (1012)
T KOG1445|consen 679 KITSLRFHPLA-------------ADVLAVASYDSTIELWDL-ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTL 744 (1012)
T ss_pred eEEEEEecchh-------------hhHhhhhhccceeeeeeh-hhhhhhheeccCcCceeEEEECCCCcceeeeecCceE
Confidence 88888777754 378999999999999999 6677788899999999999999999999999999999
Q ss_pred EEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC----eEEEEE
Q psy307 461 KLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN----KILIFS 536 (1019)
Q Consensus 461 ~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg----~I~iwd 536 (1019)
++|+.+.+..-- .+... +....-..+.|.-+|+++++.+.|. +|.+||
T Consensus 745 rVy~Prs~e~pv-~Eg~g---------------------------pvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~ 796 (1012)
T KOG1445|consen 745 RVYEPRSREQPV-YEGKG---------------------------PVGTRGARILWACDGRIVIVVGFDKSSERQVQMYD 796 (1012)
T ss_pred EEeCCCCCCCcc-ccCCC---------------------------CccCcceeEEEEecCcEEEEecccccchhhhhhhh
Confidence 999988764211 11111 1112233567778999998887664 788888
Q ss_pred ccCcccccceeEEeccccccceEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCce
Q psy307 537 ALNRFKLNRKKTFEGHMVAGYACSLDFSPDMS-YLISGDADGKCYIWDWKTTKL 589 (1019)
Q Consensus 537 ~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~-~Lasgs~DG~I~IWDl~t~~~ 589 (1019)
...-.. ..+.+..-. .+-.+.-..+.+|.. ++++|-.|..|.+|.+--..+
T Consensus 797 Aq~l~~-~pl~t~~lD-vaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 797 AQTLDL-RPLYTQVLD-VAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred hhhccC-Ccceeeeec-ccCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 764310 111111000 001122234455655 567888999999999755443
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-13 Score=151.21 Aligned_cols=259 Identities=15% Similarity=0.191 Sum_probs=176.2
Q ss_pred cCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEe-EEEEcCCCCceeEEEeecCCCCcEEEEE
Q psy307 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVR-DICFNNTGTNFISAIRWFPKSAHLLLSC 411 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~-~i~fspdg~~~vs~i~~~p~~~~~L~sg 411 (1019)
-|...|.|+.|+.. ...+.+++.+-.++-||+......+..+. ..-|. ++..-+-+ .--......++.+
T Consensus 12 r~~e~vc~v~w~~~-eei~~~~dDh~~~~~~~~~~~s~~~~~~p--~df~pt~~h~~~rs-------~~~g~~~d~~~i~ 81 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSN-EEIYFVSDDHQIFKWSDVSRDSVEVAKLP--DDFVPTDMHLGGRS-------SGGGKGSDTLLIC 81 (737)
T ss_pred ccceeEEeeccccc-ceEEEeccCceEEEeecccchhhhhhhCC--cccCCccccccccc-------cCCCCCcceEEEE
Confidence 57777889999873 45555554444444455533222111111 11111 11111100 0011234679999
Q ss_pred eCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEE-ecCCceEEEEEecCCC
Q psy307 412 SMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRF-TSRKVAYCVKFHPDED 490 (1019)
Q Consensus 412 s~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~-~~~~~v~~v~~~p~~~ 490 (1019)
+.||.+.|.+ ..++.-.....|.+.|.+-.|+|+|.-|++++.||.|++|. ++|....++ .....++|++|.|+..
T Consensus 82 s~DGkf~il~--k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~ 158 (737)
T KOG1524|consen 82 SNDGRFVILN--KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSN 158 (737)
T ss_pred cCCceEEEec--ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCC
Confidence 9999999987 56777788899999999999999999999999999999998 455444333 3567899999999988
Q ss_pred eeeeccCC----------CceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEE
Q psy307 491 KQHLDIPV----------DMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560 (1019)
Q Consensus 491 ~~~~~~~~----------~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~ 560 (1019)
...+.... ....-+..|.+-|.++.|++..+.+++|+.|-..+|||.... .+..-..|. -+|++
T Consensus 159 ~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~----~Lf~S~~~e--y~ITS 232 (737)
T KOG1524|consen 159 SIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA----NLFTSAAEE--YAITS 232 (737)
T ss_pred ceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc----ccccCChhc--cceee
Confidence 76652221 122345678888999999999999999999999999998764 122223333 67999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEE
Q psy307 561 LDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAK 624 (1019)
Q Consensus 561 v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~i 624 (1019)
++|.|+ ..++.|+.. ++++= +...|.|..++|++|| ..++.|...|.+..
T Consensus 233 va~npd-~~~~v~S~n-t~R~~-----------~p~~GSifnlsWS~DG-TQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 233 VAFNPE-KDYLLWSYN-TARFS-----------SPRVGSIFNLSWSADG-TQATCGTSTGQLIV 282 (737)
T ss_pred eeeccc-cceeeeeee-eeeec-----------CCCccceEEEEEcCCC-ceeeccccCceEEE
Confidence 999999 666666543 44411 2235789999999999 47788888887754
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-12 Score=130.50 Aligned_cols=244 Identities=12% Similarity=0.160 Sum_probs=173.2
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCC---------CcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYK---------ERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~---------~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
.|.+-+|+| .+++|+.|+.+|+|-+..+.. +...+...++|.++|.+++|.. .+
T Consensus 12 tvf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d----------------~~ 74 (325)
T KOG0649|consen 12 TVFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD----------------DF 74 (325)
T ss_pred HHHHHhhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh----------------hh
Confidence 466677899 489999999999999998842 2345566789999999999984 35
Q ss_pred EEEEeCCCcEEEEEccCCCeE-----EE--EEcccc-----ccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEe
Q psy307 408 LLSCSMDCRVKLWEVYKEHRC-----VR--TYYGHR-----QAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFT 475 (1019)
Q Consensus 408 L~sgs~Dg~I~IWDl~~~~~~-----~~--~l~~H~-----~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~ 475 (1019)
|++|+. |.|+-|..+...+. .. ...-|. -.|+++...|..+.++.++.|+.+.-||+++|+..+++.
T Consensus 75 Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 75 LLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred eeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc
Confidence 666654 99999987543221 10 111222 468999999988888888899999999999999999888
Q ss_pred cCC-ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccc-
Q psy307 476 SRK-VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHM- 553 (1019)
Q Consensus 476 ~~~-~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~- 553 (1019)
++. .+.+ +..-.....+++|+.||++++||+++......+..++...
T Consensus 154 GHtDYvH~-------------------------------vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~ 202 (325)
T KOG0649|consen 154 GHTDYVHS-------------------------------VVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNL 202 (325)
T ss_pred CCcceeee-------------------------------eeecccCcceeecCCCccEEEEeccccceeEEeccccChhh
Confidence 763 3333 3332334568899999999999999885554433332211
Q ss_pred ----cccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccc
Q psy307 554 ----VAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDAN 629 (1019)
Q Consensus 554 ----~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~ 629 (1019)
.+.+|-+++. +..+|++|+. ..+.+|.+++.++..++.- .++|..+.|-.+ .++++|..+.+..|.-..
T Consensus 203 lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfpi-pa~v~~v~F~~d---~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 203 LRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFPI-PARVHLVDFVDD---CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred cCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEec-ccceeEeeeecc---eEEEeccccceeeeeecc
Confidence 2345655555 5668887754 4699999999888777653 345677888654 588888777887775555
Q ss_pred eeeeeee
Q psy307 630 IVKIAVE 636 (1019)
Q Consensus 630 i~ki~~e 636 (1019)
+.+..+.
T Consensus 276 vl~a~ip 282 (325)
T KOG0649|consen 276 VLQANIP 282 (325)
T ss_pred EEEEecc
Confidence 5554433
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-13 Score=149.66 Aligned_cols=211 Identities=15% Similarity=0.260 Sum_probs=159.5
Q ss_pred CCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEe
Q psy307 296 YQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTY 375 (1019)
Q Consensus 296 ~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~ 375 (1019)
.+...++..+.||.+.+-+..+ +.-.....|.+.|.|-+|+|+ |.-|+|++.||.|++|.- .+-+-.++
T Consensus 73 ~~~d~~~i~s~DGkf~il~k~~--------rVE~sv~AH~~A~~~gRW~~d-GtgLlt~GEDG~iKiWSr--sGMLRStl 141 (737)
T KOG1524|consen 73 KGSDTLLICSNDGRFVILNKSA--------RVERSISAHAAAISSGRWSPD-GAGLLTAGEDGVIKIWSR--SGMLRSTV 141 (737)
T ss_pred CCcceEEEEcCCceEEEecccc--------hhhhhhhhhhhhhhhcccCCC-CceeeeecCCceEEEEec--cchHHHHH
Confidence 3446788888999998876553 345678899999999999996 888999999999999985 33333445
Q ss_pred cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEE
Q psy307 376 YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG 455 (1019)
Q Consensus 376 ~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s 455 (1019)
.....+|.|++|.|+.. +.+++.+ +.+.|=-+ .....+.....|.+-|.++.|++..+.++||+
T Consensus 142 ~Q~~~~v~c~~W~p~S~-------------~vl~c~g--~h~~IKpL-~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG 205 (737)
T KOG1524|consen 142 VQNEESIRCARWAPNSN-------------SIVFCQG--GHISIKPL-AANSKIIRWRAHDGLVLSLSWSTQSNIIASGG 205 (737)
T ss_pred hhcCceeEEEEECCCCC-------------ceEEecC--CeEEEeec-ccccceeEEeccCcEEEEeecCccccceeecC
Confidence 55667888888888775 3444333 33344333 33444556788999999999999999999999
Q ss_pred cCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEE
Q psy307 456 YDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIF 535 (1019)
Q Consensus 456 ~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iw 535 (1019)
.|-..+|||.........-.+..++++++|+|+....+. ....-.+..+..++|-.++||+||..+++|+..|.+.+=
T Consensus 206 ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~--S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 206 EDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLW--SYNTARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred CceeEEeecccCcccccCChhccceeeeeeccccceeee--eeeeeeecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 999999999765444444455678999999999433322 223334777888999999999999999999999987653
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-13 Score=150.29 Aligned_cols=233 Identities=21% Similarity=0.338 Sum_probs=162.9
Q ss_pred ceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCc
Q psy307 327 QVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAH 406 (1019)
Q Consensus 327 ~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~ 406 (1019)
+...|.||++-|+|+.|+.+ |.+|+|||.|-.+.|||...-......-.||...|.++.|-|.. +..
T Consensus 42 lE~eL~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t------------nnr 108 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT------------NNR 108 (758)
T ss_pred hhhhhccccceecceeecCC-CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC------------CCe
Confidence 45678999999999999995 89999999999999999964433334457999999999998865 236
Q ss_pred EEEEEeCCCcEEEEEccC---------CCeEEEEEccccccEeEEEEecCC-CEEEEEEcCCeEEEEECCCCc-eEEEEe
Q psy307 407 LLLSCSMDCRVKLWEVYK---------EHRCVRTYYGHRQAVRDICFNNTG-TNFISAGYDRYLKLWDTESGE-CISRFT 475 (1019)
Q Consensus 407 ~L~sgs~Dg~I~IWDl~~---------~~~~~~~l~~H~~~V~sl~fspdg-~~l~S~s~Dg~I~lWDl~t~~-~i~~~~ 475 (1019)
++++|+.|..|+++|+.. .......+..|...|..|+-.|++ ..|.+++.||+|+-+|++... |-....
T Consensus 109 iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~ 188 (758)
T KOG1310|consen 109 IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDED 188 (758)
T ss_pred EEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccc
Confidence 899999999999999954 234456677899999999999998 679999999999999997532 100000
Q ss_pred cCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC-CCEEEEEecCCeEEEEEccCccc--------cc--
Q psy307 476 SRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN-NKWLACQSMDNKILIFSALNRFK--------LN-- 544 (1019)
Q Consensus 476 ~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd-g~~Lasgs~Dg~I~iwd~~~~~~--------~~-- 544 (1019)
..+.++.++|+ .-...+++++|. ..+|++|+.|-..++||.+...+ ..
T Consensus 189 --~~~~l~ny~~~-------------------lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~p 247 (758)
T KOG1310|consen 189 --CPSILVNYNPQ-------------------LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCP 247 (758)
T ss_pred --ccHHHHHhchh-------------------hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCC
Confidence 00011111111 123456777775 46789999999999999432100 00
Q ss_pred -----ceeEE-eccc-c-----ccc---eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee
Q psy307 545 -----RKKTF-EGHM-V-----AGY---ACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKW 593 (1019)
Q Consensus 545 -----~~~~l-~gh~-~-----~~~---V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l 593 (1019)
++.-+ .+|. . ..+ ++-++|+|+|.-|+..-....|+++|+..++....+
T Consensus 248 p~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 248 PKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred CcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 01111 1221 0 011 456789999986665555558999999887765543
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-12 Score=136.27 Aligned_cols=310 Identities=17% Similarity=0.242 Sum_probs=201.5
Q ss_pred CCCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE
Q psy307 292 DPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC 371 (1019)
Q Consensus 292 ~~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~ 371 (1019)
..+++.|+++++... ..+.+++..... ..+.+ .--+.|.-|.|..++-++|.....|+.|.+|++.. ..-
T Consensus 14 c~fSp~g~yiAs~~~-yrlviRd~~tlq-------~~qlf-~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q-pew 83 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSR-YRLVIRDSETLQ-------LHQLF-LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ-PEW 83 (447)
T ss_pred eeECCCCCeeeeeee-eEEEEeccchhh-------HHHHH-HHHHHhhheeeeccceeeeeeeeccceEEEEEeec-cee
Confidence 357889999888864 477777655321 11111 11357888999998888888999999999999943 333
Q ss_pred EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEE
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNF 451 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l 451 (1019)
...+.....++.+++|||||. ++|.+...|-.|.+|.+.+........ ....+..++|+|||++.
T Consensus 84 ~ckIdeg~agls~~~WSPdgr-------------hiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~kg~~f~~dg~f~ 148 (447)
T KOG4497|consen 84 YCKIDEGQAGLSSISWSPDGR-------------HILLTSEFDLRITVWSLNTQKGYLLPH--PKTNVKGYAFHPDGQFC 148 (447)
T ss_pred EEEeccCCCcceeeeECCCcc-------------eEeeeecceeEEEEEEeccceeEEecc--cccCceeEEECCCCcee
Confidence 344555566777777777775 788999999999999995443332222 33456888999999987
Q ss_pred EEEEcC-C--eEEEEECCCCceEEEEecC-CceEEEEEecCCCeeee-ccCCCceeeeCCCCCcccEEEEcCCCCEEEEE
Q psy307 452 ISAGYD-R--YLKLWDTESGECISRFTSR-KVAYCVKFHPDEDKQHL-DIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ 526 (1019)
Q Consensus 452 ~S~s~D-g--~I~lWDl~t~~~i~~~~~~-~~v~~v~~~p~~~~~~~-~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg 526 (1019)
+.++.- . .+.|........++.+..+ -....+.|+|||..+++ +.....+...-...-.+..++|+|.+++|++|
T Consensus 149 ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 149 AILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred eeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEee
Confidence 776643 1 1222222222233334332 23467899999997765 44445554444455678899999999999999
Q ss_pred ecCCeEEEEEccCccccc---------------------------------------------------------ceeEE
Q psy307 527 SMDNKILIFSALNRFKLN---------------------------------------------------------RKKTF 549 (1019)
Q Consensus 527 s~Dg~I~iwd~~~~~~~~---------------------------------------------------------~~~~l 549 (1019)
+.|+.++|.+--+-.... ....+
T Consensus 229 syD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~l 308 (447)
T KOG4497|consen 229 SYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKL 308 (447)
T ss_pred ccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecc
Confidence 999998875432110000 00000
Q ss_pred ecc----ccccceEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEE
Q psy307 550 EGH----MVAGYACSLDFSPDMSYLISGDAD--GKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATA 623 (1019)
Q Consensus 550 ~gh----~~~~~V~~v~fspdg~~Lasgs~D--G~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~ 623 (1019)
+.. +....+.-++||+|..|+++-.+. ..+.+||++..++...+. ...+|....|+|..+++++..| ..+++
T Consensus 309 kp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg-~srLY 386 (447)
T KOG4497|consen 309 KPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTG-KSRLY 386 (447)
T ss_pred cCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcC-CceEE
Confidence 000 011235578999999999987543 579999998877655553 2457999999999875555444 44676
Q ss_pred EEecc
Q psy307 624 KVQDA 628 (1019)
Q Consensus 624 iwwd~ 628 (1019)
.|-..
T Consensus 387 ~W~ps 391 (447)
T KOG4497|consen 387 FWAPS 391 (447)
T ss_pred EEcCC
Confidence 66333
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-12 Score=136.79 Aligned_cols=201 Identities=13% Similarity=0.195 Sum_probs=147.0
Q ss_pred cEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeE
Q psy307 349 HLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRC 428 (1019)
Q Consensus 349 ~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~ 428 (1019)
..+|++...|.|++||. ..++.+..+++|...++.+.|..+. .++.+.+|+.||+|++||++...+.
T Consensus 41 ~~vav~lSngsv~lyd~-~tg~~l~~fk~~~~~~N~vrf~~~d------------s~h~v~s~ssDG~Vr~wD~Rs~~e~ 107 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDK-GTGQLLEEFKGPPATTNGVRFISCD------------SPHGVISCSSDGTVRLWDIRSQAES 107 (376)
T ss_pred eeEEEEecCCeEEEEec-cchhhhheecCCCCcccceEEecCC------------CCCeeEEeccCCeEEEEEeecchhh
Confidence 56888899999999999 4478899999999999999987742 2378999999999999999766554
Q ss_pred -EEEEcccc-ccEeEEEEecCCCEEEEEEc----CCeEEEEECCCCce-EEEEecCCceEEEEEecCCCeeeeccCCCce
Q psy307 429 -VRTYYGHR-QAVRDICFNNTGTNFISAGY----DRYLKLWDTESGEC-ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMK 501 (1019)
Q Consensus 429 -~~~l~~H~-~~V~sl~fspdg~~l~S~s~----Dg~I~lWDl~t~~~-i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~ 501 (1019)
...+.+|. .+..+++.+..++.+++|+. |-.|.+||++..+. +..+
T Consensus 108 a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~--------------------------- 160 (376)
T KOG1188|consen 108 ARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL--------------------------- 160 (376)
T ss_pred hheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh---------------------------
Confidence 34445555 45666666666777777753 67799999987765 3332
Q ss_pred eeeCCCCCcccEEEEcCC-CCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCC-CEEEEEeCCCeE
Q psy307 502 YIADPTMHSMPAVTSSPN-NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM-SYLISGDADGKC 579 (1019)
Q Consensus 502 ~i~~~~~~~i~~v~~spd-g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg-~~Lasgs~DG~I 579 (1019)
.+.|+..|+++.|+|+ .++|++||.||-|.+||+.....-..+...-.+ +..|.++.|..++ +.|.+-+..++.
T Consensus 161 --~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~--~sSI~~igw~~~~ykrI~clTH~Etf 236 (376)
T KOG1188|consen 161 --NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINH--GSSIHLIGWLSKKYKRIMCLTHMETF 236 (376)
T ss_pred --hhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcc--cceeeeeeeecCCcceEEEEEccCce
Confidence 2344555666666664 478999999999999999754211111111122 2558899999887 458888899999
Q ss_pred EEEeCCCCceeeee
Q psy307 580 YIWDWKTTKLFKKW 593 (1019)
Q Consensus 580 ~IWDl~t~~~l~~l 593 (1019)
.+|+++.+.....+
T Consensus 237 ~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 237 AIYELEDGSEETWL 250 (376)
T ss_pred eEEEccCCChhhcc
Confidence 99999988754444
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.6e-12 Score=149.05 Aligned_cols=290 Identities=13% Similarity=0.095 Sum_probs=188.5
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC-c--
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE-R-- 369 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~-~-- 369 (1019)
..+..+..|++++.||+|++|+...........+...++.--...+.++...+ +++.+|.|+.||.|++.++... .
T Consensus 1056 ~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~t~DG~v~~~~id~~~~~~ 1134 (1431)
T KOG1240|consen 1056 VSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQFAVSTKDGSVRVLRIDHYNVSK 1134 (1431)
T ss_pred ecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCeEEEEcCCCeEEEEEcccccccc
Confidence 34566789999999999999998765544344455666665667889998888 5889999999999999998542 1
Q ss_pred ---EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCc-EEEEEeCCCcEEEEEccCCCeEEE-EEccccccEeEEEE
Q psy307 370 ---RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAH-LLLSCSMDCRVKLWEVYKEHRCVR-TYYGHRQAVRDICF 444 (1019)
Q Consensus 370 ---~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~-~L~sgs~Dg~I~IWDl~~~~~~~~-~l~~H~~~V~sl~f 444 (1019)
.+.+....+ .+|. +++.-+|...... .|+.+..-+.|..||++....... ......+.|++++.
T Consensus 1135 ~~~~~~ri~n~~----------~~g~-vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~i 1203 (1431)
T KOG1240|consen 1135 RVATQVRIPNLK----------KDGV-VVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVI 1203 (1431)
T ss_pred ceeeeeeccccc----------CCCc-eEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEe
Confidence 111111111 1111 2333333333334 788888999999999954332211 12334578999999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCceEEEEecC--CceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCE
Q psy307 445 NNTGTNFISAGYDRYLKLWDTESGECISRFTSR--KVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKW 522 (1019)
Q Consensus 445 spdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~--~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~ 522 (1019)
+|.+.+++.|+..|.+.+||++-+.++..+..+ ..+..+..+|- .|...+
T Consensus 1204 dp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~----------------------------~~~~S~ 1255 (1431)
T KOG1240|consen 1204 DPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPT----------------------------YPQESV 1255 (1431)
T ss_pred cCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeecc----------------------------CCCCce
Confidence 999999999999999999999988877766543 22333333322 122233
Q ss_pred EEE-Ee-cCCeEEEEEccCcccccceeEEecc-----------------ccccceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy307 523 LAC-QS-MDNKILIFSALNRFKLNRKKTFEGH-----------------MVAGYACSLDFSPDMSYLISGDADGKCYIWD 583 (1019)
Q Consensus 523 Las-gs-~Dg~I~iwd~~~~~~~~~~~~l~gh-----------------~~~~~V~~v~fspdg~~Lasgs~DG~I~IWD 583 (1019)
.++ ++ ..+.|.+|++.++... ..+-.. .........++...+.++.+|+.|+.|+.||
T Consensus 1256 ~vs~~~~~~nevs~wn~~~g~~~---~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1256 SVSAGSSSNNEVSTWNMETGLRQ---TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred EEEecccCCCceeeeecccCcce---EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 333 33 5788999999877432 222111 0001122233444566899999999999999
Q ss_pred CCCCcee------------------------------------------------eee--------eccCCCEEEEEEcC
Q psy307 584 WKTTKLF------------------------------------------------KKW--------KAHDGVCISTLWHP 607 (1019)
Q Consensus 584 l~t~~~l------------------------------------------------~~l--------~~h~~~V~sl~~sp 607 (1019)
....... ..+ ..|..+|+++++..
T Consensus 1333 ~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~ 1412 (1431)
T KOG1240|consen 1333 PTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLK 1412 (1431)
T ss_pred CCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhc
Confidence 7421100 000 12566788888877
Q ss_pred CCCcEEEEEeCCCcEEEE
Q psy307 608 HEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 608 ~~~~~l~s~s~Dg~I~iw 625 (1019)
....++++++.||.|++|
T Consensus 1413 ~~q~llvs~s~dG~IkiW 1430 (1431)
T KOG1240|consen 1413 SEQPLLVSSSRDGVIKIW 1430 (1431)
T ss_pred cCccEEEEecCCCeeeec
Confidence 766799999999999888
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-11 Score=144.20 Aligned_cols=277 Identities=17% Similarity=0.217 Sum_probs=185.8
Q ss_pred cCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC---CcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEE
Q psy307 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK---ERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLL 409 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~---~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~ 409 (1019)
.|+..++|.+++| ++.++++|..||.|.+|.-.. .....+.+.-|...|.+++|+++| .+|+
T Consensus 203 ~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G--------------~~Ll 267 (792)
T KOG1963|consen 203 HHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG--------------AYLL 267 (792)
T ss_pred hhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC--------------ceEe
Confidence 4667799999999 599999999999999996432 223345677799999999999999 6999
Q ss_pred EEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecC------------
Q psy307 410 SCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSR------------ 477 (1019)
Q Consensus 410 sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~------------ 477 (1019)
||+..|.+.+|.+.++. .+.+..-.++|..+.++||+...+....|..|.+....+.....++.+-
T Consensus 268 SGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~ 345 (792)
T KOG1963|consen 268 SGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQ 345 (792)
T ss_pred ecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccc
Confidence 99999999999995554 6667778899999999999999999999999999987555444333321
Q ss_pred CceEEEEEecCCCeeee----------ccCCC---ce-eee--C------CCCCcccEEEEcCCCCEEEEEe--------
Q psy307 478 KVAYCVKFHPDEDKQHL----------DIPVD---MK-YIA--D------PTMHSMPAVTSSPNNKWLACQS-------- 527 (1019)
Q Consensus 478 ~~v~~v~~~p~~~~~~~----------~~~~~---~~-~i~--~------~~~~~i~~v~~spdg~~Lasgs-------- 527 (1019)
+-...++++|.....++ +.-.. .+ .+. . .....+++++.+..|.++++.-
T Consensus 346 ~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~ 425 (792)
T KOG1963|consen 346 SLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNF 425 (792)
T ss_pred ccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhc
Confidence 22345556662222222 10000 00 000 0 1122356777788899998873
Q ss_pred cCC--eEEEEEccCcccccce--eEEeccccccceEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCc----------eeee
Q psy307 528 MDN--KILIFSALNRFKLNRK--KTFEGHMVAGYACSLDFSPDMS-YLISGDADGKCYIWDWKTTK----------LFKK 592 (1019)
Q Consensus 528 ~Dg--~I~iwd~~~~~~~~~~--~~l~gh~~~~~V~~v~fspdg~-~Lasgs~DG~I~IWDl~t~~----------~l~~ 592 (1019)
.|| .+++|-.....+...+ +....|.....++ +..++-.. .+++++.||.++||-+...+ +...
T Consensus 426 ~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat-~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i 504 (792)
T KOG1963|consen 426 FDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVAT-IFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI 504 (792)
T ss_pred cCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEE-EEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeee
Confidence 333 5778876543222221 2233454333333 33334333 78999999999999883321 1111
Q ss_pred eeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccce
Q psy307 593 WKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANI 630 (1019)
Q Consensus 593 l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i 630 (1019)
-.-|..++++++|+.|| .++++|.|++|.+| |...
T Consensus 505 ~sy~k~~i~a~~fs~dG--slla~s~~~~Itiw-d~~~ 539 (792)
T KOG1963|consen 505 GSYHKTPITALCFSQDG--SLLAVSFDDTITIW-DYDT 539 (792)
T ss_pred eccccCcccchhhcCCC--cEEEEecCCEEEEe-cCCC
Confidence 11367889999999998 48888899999665 4443
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-12 Score=132.46 Aligned_cols=254 Identities=14% Similarity=0.143 Sum_probs=172.2
Q ss_pred ccCCCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeec-cCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC
Q psy307 290 IKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWE-GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE 368 (1019)
Q Consensus 290 ~~~~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~-gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~ 368 (1019)
....++.++| ++.+..-|.|.+|...... ....|+ .|...|+.+.--|. ..|.+=+.|+.+.+|++...
T Consensus 18 ~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r-------~~~~~r~~g~~~it~lq~~p~--d~l~tqgRd~~L~lw~ia~s 87 (323)
T KOG0322|consen 18 TSVLFQANER-LMSGLSVGIVKMWVLQTER-------DLPLIRLFGRLFITNLQSIPN--DSLDTQGRDPLLILWTIAYS 87 (323)
T ss_pred eehhhccchh-hhcccccceEEEEEeecCc-------cchhhhhhccceeeceeecCC--cchhhcCCCceEEEEEccCc
Confidence 3345666676 8889999999999877543 344566 57788999998883 57888999999999998432
Q ss_pred cE-EEEEe------------cccCccEeEEEEcCCCC-c-------------------------eeEEEeecCCCC--cE
Q psy307 369 RR-CVRTY------------YGHRQAVRDICFNNTGT-N-------------------------FISAIRWFPKSA--HL 407 (1019)
Q Consensus 369 ~~-~~~~~------------~gh~~~V~~i~fspdg~-~-------------------------~vs~i~~~p~~~--~~ 407 (1019)
.- .++.+ ....+.+..+.+.|+.. + .+.|..|.-.++ -+
T Consensus 88 ~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~l 167 (323)
T KOG0322|consen 88 AFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFL 167 (323)
T ss_pred ceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEE
Confidence 11 11111 11111111111222110 0 022233322222 35
Q ss_pred EEEEeCCCcEEEEEccCCCe---------EEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCC
Q psy307 408 LLSCSMDCRVKLWEVYKEHR---------CVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRK 478 (1019)
Q Consensus 408 L~sgs~Dg~I~IWDl~~~~~---------~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~ 478 (1019)
|++|..+|.|.+||+..+.. .......|..+|.++.|.+.-..=++|+.+..+..|+++.......+.
T Consensus 168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~--- 244 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR--- 244 (323)
T ss_pred EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc---
Confidence 77888999999999965432 233446799999999998776666788888899999875431100000
Q ss_pred ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccce
Q psy307 479 VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYA 558 (1019)
Q Consensus 479 ~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V 558 (1019)
.......-.+..+.+-||++.+|+++.|+.|+||+.++. +.+..+.-|. +.|
T Consensus 245 -----------------------~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl---~pLAVLkyHs--agv 296 (323)
T KOG0322|consen 245 -----------------------KEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL---NPLAVLKYHS--AGV 296 (323)
T ss_pred -----------------------ceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC---Cchhhhhhhh--cce
Confidence 000111234566788999999999999999999999887 5557777887 669
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy307 559 CSLDFSPDMSYLISGDADGKCYIWDW 584 (1019)
Q Consensus 559 ~~v~fspdg~~Lasgs~DG~I~IWDl 584 (1019)
.+++|+||...+|+++.|++|.+|++
T Consensus 297 n~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 297 NAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999986
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.4e-13 Score=155.15 Aligned_cols=266 Identities=20% Similarity=0.278 Sum_probs=185.6
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.+|..|+++++++.|.-|++|+.. ...++.+..||++.|+.++.+. ...+++++|.|..|++|.+ ..+.++
T Consensus 197 ~fDrtg~~Iitgsdd~lvKiwS~e-------t~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl-~~~~pv 267 (1113)
T KOG0644|consen 197 IFDRTGRYIITGSDDRLVKIWSME-------TARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRL-PDGAPV 267 (1113)
T ss_pred eeccccceEeecCccceeeeeecc-------chhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEec-CCCchH
Confidence 489999999999999999999854 2356789999999999999988 4788999999999999999 667888
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEE--EEE-ccccccEeEEEEecCCC
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCV--RTY-YGHRQAVRDICFNNTGT 449 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~--~~l-~~H~~~V~sl~fspdg~ 449 (1019)
..+.||+++|++|+|+|-. +.+.||++++||.+-..... ..+ .....-+.++.|...+.
T Consensus 268 svLrghtgavtaiafsP~~------------------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~ 329 (1113)
T KOG0644|consen 268 SVLRGHTGAVTAIAFSPRA------------------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD 329 (1113)
T ss_pred HHHhccccceeeeccCccc------------------cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc
Confidence 9999999999999999843 67889999999985111000 000 01224566777878888
Q ss_pred EEEEEEcCCeEEEEECCCCce---EEEEecCCceEEEEEecCCCee----eec-cCCCceeeeCCCCCcccEEEEcCCCC
Q psy307 450 NFISAGYDRYLKLWDTESGEC---ISRFTSRKVAYCVKFHPDEDKQ----HLD-IPVDMKYIADPTMHSMPAVTSSPNNK 521 (1019)
Q Consensus 450 ~l~S~s~Dg~I~lWDl~t~~~---i~~~~~~~~v~~v~~~p~~~~~----~~~-~~~~~~~i~~~~~~~i~~v~~spdg~ 521 (1019)
.++|++.|+.-..|.+..-.+ ...|.......+ ..++..... .+. .......+...+.+.+..+.+||-..
T Consensus 330 ~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~-~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ 408 (1113)
T KOG0644|consen 330 RFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLS-SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNP 408 (1113)
T ss_pred ccccccCCcccccchhhHhhhhccceEEEecccccc-ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCc
Confidence 899999999888886543211 111111110000 000000000 000 01112233445667778888999766
Q ss_pred EE-EEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q psy307 522 WL-ACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFK 591 (1019)
Q Consensus 522 ~L-asgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~ 591 (1019)
.+ .+.+.||.+.|||+-.+.++.. .+.+| +.+...+||+||..++....-|.++|.....++...
T Consensus 409 ri~msag~dgst~iwdi~eg~pik~--y~~gh---~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k 474 (1113)
T KOG0644|consen 409 RIAMSAGYDGSTIIWDIWEGIPIKH--YFIGH---GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQK 474 (1113)
T ss_pred HhhhhccCCCceEeeecccCCccee--eeccc---ceeeccccCCCCceEecCCCCCceEEeccCCCcccc
Confidence 55 4678999999999988755432 23455 567788999999999999999999999876655443
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-12 Score=141.38 Aligned_cols=200 Identities=22% Similarity=0.301 Sum_probs=142.3
Q ss_pred EEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEE
Q psy307 339 SAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVK 418 (1019)
Q Consensus 339 ~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~ 418 (1019)
.+++|+.+ |..|++|+.||++|||++ .....+.....|.+.|.++.|+||| ++|++-+.| ..+
T Consensus 148 k~vaf~~~-gs~latgg~dg~lRv~~~-Ps~~t~l~e~~~~~eV~DL~FS~dg--------------k~lasig~d-~~~ 210 (398)
T KOG0771|consen 148 KVVAFNGD-GSKLATGGTDGTLRVWEW-PSMLTILEEIAHHAEVKDLDFSPDG--------------KFLASIGAD-SAR 210 (398)
T ss_pred eEEEEcCC-CCEeeeccccceEEEEec-CcchhhhhhHhhcCccccceeCCCC--------------cEEEEecCC-ceE
Confidence 67899995 889999999999999997 3334455677899999999999999 799999999 999
Q ss_pred EEEccCCCeEEEEEc--cccccEeEEEEecCC---CE--EEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCe
Q psy307 419 LWEVYKEHRCVRTYY--GHRQAVRDICFNNTG---TN--FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDK 491 (1019)
Q Consensus 419 IWDl~~~~~~~~~l~--~H~~~V~sl~fspdg---~~--l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~ 491 (1019)
||+...+ .++.... ........+.|+.|+ .+ +++...-+.|+.||+....--..+...+
T Consensus 211 VW~~~~g-~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~------------- 276 (398)
T KOG0771|consen 211 VWSVNTG-AALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK------------- 276 (398)
T ss_pred EEEeccC-chhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh-------------
Confidence 9999544 4443333 233445666788776 33 3333344667777654221100000000
Q ss_pred eeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEE
Q psy307 492 QHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLI 571 (1019)
Q Consensus 492 ~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~La 571 (1019)
.......|.+++++++|++++.|+.||.|.|++..+-..... .-+.|. +.|+.+.|+||.++++
T Consensus 277 ------------~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~--vk~aH~--~~VT~ltF~Pdsr~~~ 340 (398)
T KOG0771|consen 277 ------------KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQY--VKEAHL--GFVTGLTFSPDSRYLA 340 (398)
T ss_pred ------------hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEe--ehhhhe--eeeeeEEEcCCcCccc
Confidence 011124688999999999999999999999999876533221 122343 7899999999999999
Q ss_pred EEeCCCeEEEEeCC
Q psy307 572 SGDADGKCYIWDWK 585 (1019)
Q Consensus 572 sgs~DG~I~IWDl~ 585 (1019)
+.+.|..+.|..+.
T Consensus 341 svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 341 SVSSDNEAAVTKLA 354 (398)
T ss_pred ccccCCceeEEEEe
Confidence 99999888877654
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=9e-12 Score=146.08 Aligned_cols=255 Identities=13% Similarity=0.110 Sum_probs=167.2
Q ss_pred CCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCC-CCcEEEEeeCCCeEEEEecCCCcEEEEE
Q psy307 296 YQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPK-SAHLLLSCSMDCRVKLWEVYKERRCVRT 374 (1019)
Q Consensus 296 ~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd-~g~lLaSgs~Dg~I~IWdl~~~~~~~~~ 374 (1019)
.+...++.|..+|.|.+|+........ +...-.....|..+|+++.|..+ .+.-++|+|.||.|..|++..-..+...
T Consensus 253 ~~p~ll~gG~y~GqV~lWD~~~~~~~~-~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~ 331 (555)
T KOG1587|consen 253 FDPNLLAGGCYNGQVVLWDLRKGSDTP-PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEG 331 (555)
T ss_pred CCcceEEeeccCceEEEEEccCCCCCC-CcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhh
Confidence 456778899999999999987654321 22222334579999999999764 1245999999999999987432221111
Q ss_pred ecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEE---ccCCC----eEEEEEccccccEeEEEEecC
Q psy307 375 YYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWE---VYKEH----RCVRTYYGHRQAVRDICFNNT 447 (1019)
Q Consensus 375 ~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWD---l~~~~----~~~~~l~~H~~~V~sl~fspd 447 (1019)
...-.. ....-.......++++.|.+.++..++.|+.+|.|.--+ .+... +....+..|.++|.++.++|-
T Consensus 332 ~~~~~~--~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF 409 (555)
T KOG1587|consen 332 LLLESK--KHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPF 409 (555)
T ss_pred cccccc--cccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCC
Confidence 110000 000000111223456667777779999999999988733 22222 234466778999999999998
Q ss_pred CCEEEEEEcCCeEEEEECC-CCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC-CEEEE
Q psy307 448 GTNFISAGYDRYLKLWDTE-SGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN-KWLAC 525 (1019)
Q Consensus 448 g~~l~S~s~Dg~I~lWDl~-t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg-~~Las 525 (1019)
+..++..+.|.+|+||... ...++..+... ...+++++|||.. ..|++
T Consensus 410 ~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~------------------------------~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 410 YPKNFLSVGDWTVRIWSEDVIASPLLSLDSS------------------------------PDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred ccceeeeeccceeEeccccCCCCcchhhhhc------------------------------cceeeeeEEcCcCceEEEE
Confidence 8776655569999999876 33343333322 1224445555543 56788
Q ss_pred EecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy307 526 QSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKT 586 (1019)
Q Consensus 526 gs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t 586 (1019)
+..||.|.+||+..... ....+..-+ ....+.+.|+++|+.|++|+..|++++|++..
T Consensus 460 ~d~~G~l~iWDLl~~~~-~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDE-EPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EcCCCceehhhhhcccc-CCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 88999999999975422 122222222 25567888999999999999999999999853
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-11 Score=135.26 Aligned_cols=263 Identities=13% Similarity=0.152 Sum_probs=189.6
Q ss_pred cCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEeccc--CccEeEEEEcCCCCceeEE-------------
Q psy307 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGH--RQAVRDICFNNTGTNFISA------------- 397 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh--~~~V~~i~fspdg~~~vs~------------- 397 (1019)
+|....+.|..+||+..+++||..--.|++||+.+- .+ .+..| ...|.-.-++.|-+..+.-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL-SL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL-SL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccc-ee--eeeecccccceeEEEeccchhhheEeecCceeeehhhcC
Confidence 466678889999998888999999999999999431 11 12222 2234444444443332211
Q ss_pred -------------EeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEE
Q psy307 398 -------------IRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWD 464 (1019)
Q Consensus 398 -------------i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWD 464 (1019)
++++..... |++++....|+-+++ ..++.+..+....+.+++|..++....|++|+.||.|..||
T Consensus 126 ~hy~~RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNL-EqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 126 RHYRTRIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNL-EQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred eeeeeecCcCCccccccCCCcc-EEEeecCcceEEEEc-cccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 222222333 455555566777788 67778888888889999999999999999999999999999
Q ss_pred CCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCccccc
Q psy307 465 TESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLN 544 (1019)
Q Consensus 465 l~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~ 544 (1019)
.++...+.++.....|.+ +|. ......|+++.|+.+|-.+++|+.+|.|.|||++...++
T Consensus 204 pR~ksrv~~l~~~~~v~s---~pg----------------~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl- 263 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNS---HPG----------------GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL- 263 (703)
T ss_pred chhhhhheeeecccccCC---Ccc----------------ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce-
Confidence 999887777765433221 111 112356889999999999999999999999999987443
Q ss_pred ceeEEeccccccceEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcE
Q psy307 545 RKKTFEGHMVAGYACSLDFSPD--MSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAAT 622 (1019)
Q Consensus 545 ~~~~l~gh~~~~~V~~v~fspd--g~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I 622 (1019)
....|....+|..+.|.+. +..|+|. ....++|||-.+|+....+.... .++.+|+-|+++ +++++-.++.+
T Consensus 264 ---~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p~sG-m~f~Ane~~~m 337 (703)
T KOG2321|consen 264 ---LVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS-DLNDFCFVPGSG-MFFTANESSKM 337 (703)
T ss_pred ---eecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccC-CcCceeeecCCc-eEEEecCCCcc
Confidence 3445666688999999775 4456655 34579999999999999887544 489999999874 88888888877
Q ss_pred EEEe
Q psy307 623 AKVQ 626 (1019)
Q Consensus 623 ~iww 626 (1019)
..++
T Consensus 338 ~~yy 341 (703)
T KOG2321|consen 338 HTYY 341 (703)
T ss_pred eeEE
Confidence 6554
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-11 Score=141.92 Aligned_cols=210 Identities=14% Similarity=0.121 Sum_probs=139.5
Q ss_pred CCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC---CcEEEEEccCCC-eEEEE
Q psy307 356 MDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD---CRVKLWEVYKEH-RCVRT 431 (1019)
Q Consensus 356 ~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D---g~I~IWDl~~~~-~~~~~ 431 (1019)
.+..|.+||..... .+.+..|...+.+.+|+|||. .|+.++.+ ..|++||+..+. ..+..
T Consensus 182 ~~~~i~i~d~dg~~--~~~lt~~~~~v~~p~wSPDG~--------------~la~~s~~~~~~~i~i~dl~tg~~~~l~~ 245 (429)
T PRK01742 182 QPYEVRVADYDGFN--QFIVNRSSQPLMSPAWSPDGS--------------KLAYVSFENKKSQLVVHDLRSGARKVVAS 245 (429)
T ss_pred ceEEEEEECCCCCC--ceEeccCCCccccceEcCCCC--------------EEEEEEecCCCcEEEEEeCCCCceEEEec
Confidence 35789999984332 455677888899999999994 55555433 479999995443 23444
Q ss_pred EccccccEeEEEEecCCCEEEEEE-cCCeEEEE--ECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCC
Q psy307 432 YYGHRQAVRDICFNNTGTNFISAG-YDRYLKLW--DTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTM 508 (1019)
Q Consensus 432 l~~H~~~V~sl~fspdg~~l~S~s-~Dg~I~lW--Dl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~ 508 (1019)
+.+|. .+++|+|||+.|+.++ .+|.+.|| |+.++.... +.. +.
T Consensus 246 ~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~-lt~------------------------------~~ 291 (429)
T PRK01742 246 FRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ-LTS------------------------------GA 291 (429)
T ss_pred CCCcc---CceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEe-ecc------------------------------CC
Confidence 44444 3579999999888765 67876555 665554321 211 11
Q ss_pred CcccEEEEcCCCCEEEEEe-cCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy307 509 HSMPAVTSSPNNKWLACQS-MDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTT 587 (1019)
Q Consensus 509 ~~i~~v~~spdg~~Lasgs-~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~ 587 (1019)
..+...+|+|+|+.|+..+ .+|...||++...... ...+ ++. + .++.|+|||++|+.++.++ +.+||+.++
T Consensus 292 ~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~--~~~l-~~~--~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g 363 (429)
T PRK01742 292 GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG--ASLV-GGR--G--YSAQISADGKTLVMINGDN-VVKQDLTSG 363 (429)
T ss_pred CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC--eEEe-cCC--C--CCccCCCCCCEEEEEcCCC-EEEEECCCC
Confidence 2345678999999877655 5688888877532211 1222 332 2 3478999999998887765 666999988
Q ss_pred ceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 588 KLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 588 ~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
+.......+ ...++.|+|++ .+|+.++.+|.+.+|+
T Consensus 364 ~~~~lt~~~--~~~~~~~sPdG-~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 364 STEVLSSTF--LDESPSISPNG-IMIIYSSTQGLGKVLQ 399 (429)
T ss_pred CeEEecCCC--CCCCceECCCC-CEEEEEEcCCCceEEE
Confidence 754332222 23567899998 5888888899887775
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=99.40 E-value=2e-13 Score=132.52 Aligned_cols=106 Identities=23% Similarity=0.256 Sum_probs=91.8
Q ss_pred HHHHhhhe-------eeeeeeccc----hhhhhh-chh------------------hhH-HHHHHHHhhhhhhhhcC--c
Q psy307 726 KTAAEFYC-------ICIVLLNKT----WKEMRA-TTE------------------DFV-KVFSVVREQITRALSSQ--P 772 (1019)
Q Consensus 726 ~~~~e~~~-------~~i~~~~~~----~~~~~a-~l~------------------~fv-kv~s~v~~~~~~~~~~~--~ 772 (1019)
|||.|||+ +.++|.++. ++++++ +|+ .|| |+++|||.+.+++.+.| .
T Consensus 2 TFA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 2 TFAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred chHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence 79999999 356776664 788888 776 899 99999999876776666 3
Q ss_pred hhhHHHHhcc--------ccccHHHHHHHhhccccchhhhhcccccHHHHHhhc-------hHHHHHHHHHHhhcceec
Q psy307 773 ASLDKFRANI--------SRLTYSEITNLWQQERTSREEWESHAKPIVELKELI-------TPEIVDLIQQQRLGYLVE 836 (1019)
Q Consensus 773 ~~L~~~~~~~--------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~lln~l~-------~~ei~~~i~~~~l~~li~ 836 (1019)
+.|+++|++| +++|++.|+.|||. +++++|+| +|+|||||+ |++|++.+.++++|..|.
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~---~~~~iq~n--aiaLinAL~~kA~~~~r~~i~~~l~~k~~R~~I~ 155 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQV---SNQEIQTN--AIALINALFLKADDSKRKEIAETLSQKQIRQVIL 155 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHc---CCHHHHHH--HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 4666999999 89999999999999 99999999 999999999 679999999999998654
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.7e-11 Score=123.07 Aligned_cols=290 Identities=16% Similarity=0.280 Sum_probs=190.5
Q ss_pred eCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccE
Q psy307 303 HPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAV 382 (1019)
Q Consensus 303 ~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V 382 (1019)
....|+.|.+|+...++ --..+..-..++.+++|||++.++|.+...|-.|.||.+.+.. +. .+.--+..+
T Consensus 66 ~~yk~~~vqvwsl~Qpe-------w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~-~~-~~~~pK~~~ 136 (447)
T KOG4497|consen 66 VAYKDPKVQVWSLVQPE-------WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK-GY-LLPHPKTNV 136 (447)
T ss_pred eeeccceEEEEEeecce-------eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce-eE-EecccccCc
Confidence 44567789999876443 2334566678999999999988999999999999999995433 22 233334557
Q ss_pred eEEEEcCCCCceeEE--------------------------------EeecCCCCcEEEEEeCCCcEEEEEccCCCeEEE
Q psy307 383 RDICFNNTGTNFISA--------------------------------IRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVR 430 (1019)
Q Consensus 383 ~~i~fspdg~~~vs~--------------------------------i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~ 430 (1019)
..++|++||.....+ +.|+|++ ..+.+||---..+
T Consensus 137 kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg----------~~laVwd~~Leyk--- 203 (447)
T KOG4497|consen 137 KGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG----------NWLAVWDNVLEYK--- 203 (447)
T ss_pred eeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC----------cEEEEecchhhhe---
Confidence 899999999865433 3355543 3456676421111
Q ss_pred EEccc-cccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecC--------------------CceEEEEEecCC
Q psy307 431 TYYGH-RQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSR--------------------KVAYCVKFHPDE 489 (1019)
Q Consensus 431 ~l~~H-~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~--------------------~~v~~v~~~p~~ 489 (1019)
.+.-| .-.+..+.|+|.++.++.|++|+.+||.+--+.+....+-+. -...|+.|.|..
T Consensus 204 v~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~ 283 (447)
T KOG4497|consen 204 VYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD 283 (447)
T ss_pred eeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCc
Confidence 11222 356888999999999999999999999876555544333211 012356666543
Q ss_pred Ceeee-----------ccCCCceeeeCC-----CCCcccEEEEcCCCCEEEEEec--CCeEEEEEccCcccccceeEEec
Q psy307 490 DKQHL-----------DIPVDMKYIADP-----TMHSMPAVTSSPNNKWLACQSM--DNKILIFSALNRFKLNRKKTFEG 551 (1019)
Q Consensus 490 ~~~~~-----------~~~~~~~~i~~~-----~~~~i~~v~~spdg~~Lasgs~--Dg~I~iwd~~~~~~~~~~~~l~g 551 (1019)
-.... ..++.......+ ..-.+..++|++|..++++-.. -+.+-+||++..... ..+.
T Consensus 284 ~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~---avLi- 359 (447)
T KOG4497|consen 284 LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLH---AVLI- 359 (447)
T ss_pred cccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhh---hhhh-
Confidence 22111 111111111111 1234567999999999988753 368999999865221 1111
Q ss_pred cccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcE
Q psy307 552 HMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAAT 622 (1019)
Q Consensus 552 h~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I 622 (1019)
.. .+|....|+|....|+.+....++++|...-...+..- ...-.|..++|+..| ..++.+|.|.-.
T Consensus 360 Qk--~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP-~~GF~i~~l~W~~~g-~~i~l~~kDafc 426 (447)
T KOG4497|consen 360 QK--HPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP-KKGFNIQKLQWLQPG-EFIVLCGKDAFC 426 (447)
T ss_pred hc--cceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC-CCCceeeeEEecCCC-cEEEEEcCCceE
Confidence 11 45889999999988888888888999987665555443 233579999999998 478888888643
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-10 Score=130.17 Aligned_cols=229 Identities=10% Similarity=0.143 Sum_probs=143.3
Q ss_pred EEEeeCCCeEEEEecCCCc--EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEE-eCCCcEEEEEccCCCe
Q psy307 351 LLSCSMDCRVKLWEVYKER--RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSC-SMDCRVKLWEVYKEHR 427 (1019)
Q Consensus 351 LaSgs~Dg~I~IWdl~~~~--~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sg-s~Dg~I~IWDl~~~~~ 427 (1019)
.++.+.|+.|.+|++...+ ..+..+. +.+....++++|++ ++|+++ ..++.|.+|++...+.
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~--------------~~lyv~~~~~~~i~~~~~~~~g~ 69 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDK--------------RHLYVGVRPEFRVLSYRIADDGA 69 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCC--------------CEEEEEECCCCcEEEEEECCCCc
Confidence 4445779999999995433 2445554 34556778888888 455544 4588999999963333
Q ss_pred E--EEEEccccccEeEEEEecCCCEEEEEEc-CCeEEEEECCCCc-eEEEEecCCceEEEEEecCCCeeeeccCCCceee
Q psy307 428 C--VRTYYGHRQAVRDICFNNTGTNFISAGY-DRYLKLWDTESGE-CISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYI 503 (1019)
Q Consensus 428 ~--~~~l~~H~~~V~sl~fspdg~~l~S~s~-Dg~I~lWDl~t~~-~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i 503 (1019)
. .... ...+....++|+|+++++++++. ++.|.+||+.+.. .......
T Consensus 70 l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~--------------------------- 121 (330)
T PRK11028 70 LTFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI--------------------------- 121 (330)
T ss_pred eEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee---------------------------
Confidence 2 2222 23345678999999999888775 8899999986422 1110000
Q ss_pred eCCCCCcccEEEEcCCCCEEEEE-ecCCeEEEEEccCcccccce--eEEeccccccceEEEEEcCCCCEEEEEeC-CCeE
Q psy307 504 ADPTMHSMPAVTSSPNNKWLACQ-SMDNKILIFSALNRFKLNRK--KTFEGHMVAGYACSLDFSPDMSYLISGDA-DGKC 579 (1019)
Q Consensus 504 ~~~~~~~i~~v~~spdg~~Lasg-s~Dg~I~iwd~~~~~~~~~~--~~l~gh~~~~~V~~v~fspdg~~Lasgs~-DG~I 579 (1019)
.........++++|+|++++++ ..++.|.+||+.+...+... ....... ......+.|+|||+++++++. +++|
T Consensus 122 -~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v 199 (330)
T PRK11028 122 -IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSV 199 (330)
T ss_pred -ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEE
Confidence 0001224457789999888655 45699999999763222110 1111111 123567999999999988876 8999
Q ss_pred EEEeCCC--Cc--eeeeeeccC------CCEEEEEEcCCCCcEEEEEe-CCCcEEEE
Q psy307 580 YIWDWKT--TK--LFKKWKAHD------GVCISTLWHPHEPSKVVTAG-WDAATAKV 625 (1019)
Q Consensus 580 ~IWDl~t--~~--~l~~l~~h~------~~V~sl~~sp~~~~~l~s~s-~Dg~I~iw 625 (1019)
.+||+.. ++ .+.++..+. .....+.++|++. +++++. .++.|.+|
T Consensus 200 ~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~-~lyv~~~~~~~I~v~ 255 (330)
T PRK11028 200 DVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR-HLYACDRTASLISVF 255 (330)
T ss_pred EEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC-EEEEecCCCCeEEEE
Confidence 9999973 33 344443221 1234688999985 555554 46777655
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-10 Score=136.81 Aligned_cols=226 Identities=14% Similarity=0.167 Sum_probs=146.6
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeC---CCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCC
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSM---DCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKS 404 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~---Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~ 404 (1019)
.+.+..|...+.+.+|+|+ ++.|+.++. ...|.+||+..+ +.. .+....+.+....|+|||.
T Consensus 188 ~~~l~~~~~~v~~p~wSPD-G~~la~~s~~~~~~~I~~~dl~~g-~~~-~l~~~~g~~~~~~~SPDG~------------ 252 (427)
T PRK02889 188 AQSALSSPEPIISPAWSPD-GTKLAYVSFESKKPVVYVHDLATG-RRR-VVANFKGSNSAPAWSPDGR------------ 252 (427)
T ss_pred ceEeccCCCCcccceEcCC-CCEEEEEEccCCCcEEEEEECCCC-CEE-EeecCCCCccceEECCCCC------------
Confidence 3455678889999999997 555555443 246999999543 322 2233334456777888774
Q ss_pred CcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc-CCeEEEEEC--CCCceEEEEecCCceE
Q psy307 405 AHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY-DRYLKLWDT--ESGECISRFTSRKVAY 481 (1019)
Q Consensus 405 ~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~-Dg~I~lWDl--~t~~~i~~~~~~~~v~ 481 (1019)
.++++.+.+|...||.+...+.....+..+.+.+....|+|||+.|+..+. ++...||.+ .++.... +
T Consensus 253 -~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-l------- 323 (427)
T PRK02889 253 -TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-V------- 323 (427)
T ss_pred -EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-E-------
Confidence 455677888888888765444445566666666677899999999886664 456666654 3332211 1
Q ss_pred EEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC---eEEEEEccCcccccceeEEeccccccce
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN---KILIFSALNRFKLNRKKTFEGHMVAGYA 558 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg---~I~iwd~~~~~~~~~~~~l~gh~~~~~V 558 (1019)
.+. ........|+|+|++|+..+.++ .|.+||+.++.. ..+... ...
T Consensus 324 --t~~---------------------g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~----~~lt~~---~~~ 373 (427)
T PRK02889 324 --TFT---------------------GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV----TALTDT---TRD 373 (427)
T ss_pred --ecC---------------------CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----EEccCC---CCc
Confidence 110 01122467899999998877654 699999877532 222221 123
Q ss_pred EEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeeeeeccCCCEEEEEEcCC
Q psy307 559 CSLDFSPDMSYLISGDADG---KCYIWDWKTTKLFKKWKAHDGVCISTLWHPH 608 (1019)
Q Consensus 559 ~~v~fspdg~~Lasgs~DG---~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~ 608 (1019)
..+.|+|||++|+.++.++ .+.+.++ ++.....+..+.+.+...+|+|-
T Consensus 374 ~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 374 ESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred cCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 5679999999988776544 4666676 56667777777788888899874
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-10 Score=123.67 Aligned_cols=259 Identities=15% Similarity=0.236 Sum_probs=170.1
Q ss_pred CeeeeCCCCCceeeecCCCCCCccCCccceeeecc-CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE------
Q psy307 299 RSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEG-HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC------ 371 (1019)
Q Consensus 299 r~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~g-H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~------ 371 (1019)
-.++.+..|..|++++...... ..++. ....|+|++|-|.++.-|+.|+.. -|.||........
T Consensus 111 ~~fava~nddvVriy~ksst~p--------t~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~ 181 (445)
T KOG2139|consen 111 IAFAVATNDDVVRIYDKSSTCP--------TKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRM 181 (445)
T ss_pred hhhhhhccCcEEEEeccCCCCC--------ceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccccccc
Confidence 3467888899999997764222 12222 245899999999988888888765 5889987432211
Q ss_pred -------EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC-CCcEEEEEccCCCeEEEEEccccccEeEEE
Q psy307 372 -------VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM-DCRVKLWEVYKEHRCVRTYYGHRQAVRDIC 443 (1019)
Q Consensus 372 -------~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~-Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~ 443 (1019)
+....|| .+|+++.|.+|| ..+++++. |..|.|||+. .+..+.......+.++-+.
T Consensus 182 ~s~~~~qvl~~pgh-~pVtsmqwn~dg--------------t~l~tAS~gsssi~iWdpd-tg~~~pL~~~glgg~slLk 245 (445)
T KOG2139|consen 182 MSTHHLQVLQDPGH-NPVTSMQWNEDG--------------TILVTASFGSSSIMIWDPD-TGQKIPLIPKGLGGFSLLK 245 (445)
T ss_pred ccccchhheeCCCC-ceeeEEEEcCCC--------------CEEeecccCcceEEEEcCC-CCCcccccccCCCceeeEE
Confidence 1223444 567778777777 46666654 6789999994 4444443345567788899
Q ss_pred EecCCCEEEEEEcCCeEEEEE-CCCCceEEEEecCCceEEEEEecCCCeeeecc--------------------CCCcee
Q psy307 444 FNNTGTNFISAGYDRYLKLWD-TESGECISRFTSRKVAYCVKFHPDEDKQHLDI--------------------PVDMKY 502 (1019)
Q Consensus 444 fspdg~~l~S~s~Dg~I~lWD-l~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~--------------------~~~~~~ 502 (1019)
|||||.+|++++.|+..++|+ .++..+..-......+....|+|.|..+.+.. +...+.
T Consensus 246 wSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~ 325 (445)
T KOG2139|consen 246 WSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKR 325 (445)
T ss_pred EcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCccccee
Confidence 999999999999999999994 44455555555566888999999998766511 111111
Q ss_pred ---eeC-----------CCCCcccEEEEcCCCCEEEEEecCC--------eEEEEEccCcccccceeEEeccccccceEE
Q psy307 503 ---IAD-----------PTMHSMPAVTSSPNNKWLACQSMDN--------KILIFSALNRFKLNRKKTFEGHMVAGYACS 560 (1019)
Q Consensus 503 ---i~~-----------~~~~~i~~v~~spdg~~Lasgs~Dg--------~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~ 560 (1019)
+.+ .-.+.+.+++|.|.|.++|+.-..+ .|.+||.+..-.. ...+-|...+.+...
T Consensus 326 ~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v--els~cg~i~ge~P~~ 403 (445)
T KOG2139|consen 326 VLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV--ELSYCGMIGGEYPAY 403 (445)
T ss_pred eeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce--EEEecccccCCCCce
Confidence 111 0135577999999999999876544 3667777653221 112223333334555
Q ss_pred EEEcC---CCCEEEEEeCCCeEEEEeC
Q psy307 561 LDFSP---DMSYLISGDADGKCYIWDW 584 (1019)
Q Consensus 561 v~fsp---dg~~Lasgs~DG~I~IWDl 584 (1019)
++|+| +|.+|..+=..|.+.-|++
T Consensus 404 IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 404 ISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred EEeeecccCCcEEEEEeccCceEeeee
Confidence 67776 5667777767777776664
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=131.21 Aligned_cols=306 Identities=12% Similarity=0.145 Sum_probs=189.0
Q ss_pred EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEcc-----CCCeEEEEEc-cccccEeEEEEe
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVY-----KEHRCVRTYY-GHRQAVRDICFN 445 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~-----~~~~~~~~l~-~H~~~V~sl~fs 445 (1019)
...+.+|.+.|+.|.|+.++ .+|++|+.|..+++|++. ...+++.... .|...|.|++|.
T Consensus 49 qKD~~~H~GCiNAlqFS~N~--------------~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~ 114 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHND--------------RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFD 114 (609)
T ss_pred hhhhhhhccccceeeeccCC--------------eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEc
Confidence 34567899999999999988 799999999999999984 2335555543 456899999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEE
Q psy307 446 NTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLAC 525 (1019)
Q Consensus 446 pdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Las 525 (1019)
...+.+++|+.+++|.+.|+++.+.+..+.... ..+.|..+..+|..+.|++
T Consensus 115 ~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~----------------------------~~~~VY~m~~~P~DN~~~~ 166 (609)
T KOG4227|consen 115 LENRFLYSGERWGTVIKHDIETKQSIYVANENN----------------------------NRGDVYHMDQHPTDNTLIV 166 (609)
T ss_pred cCCeeEecCCCcceeEeeecccceeeeeecccC----------------------------cccceeecccCCCCceEEE
Confidence 988899999999999999999998877665432 1234556667778889999
Q ss_pred EecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCce-ee------eeeccC
Q psy307 526 QSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM-SYLISGDADGKCYIWDWKTTKL-FK------KWKAHD 597 (1019)
Q Consensus 526 gs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg-~~Lasgs~DG~I~IWDl~t~~~-l~------~l~~h~ 597 (1019)
.+.++.|.+||.+..... ...+...........+.|+|-. .+|++.+..|-+-+||.+.... +. .++...
T Consensus 167 ~t~~~~V~~~D~Rd~~~~--~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~ 244 (609)
T KOG4227|consen 167 VTRAKLVSFIDNRDRQNP--ISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQEN 244 (609)
T ss_pred EecCceEEEEeccCCCCC--CceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccc
Confidence 999999999999876422 1222111222446678899954 5778888888999999876432 11 122212
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCC---------ceeeccc-ccccchhhhhhhcccccC
Q psy307 598 GVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVP---------QLYQFNQ-TLTLSSIIQEICSGWSLS 667 (1019)
Q Consensus 598 ~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~---------ql~~l~~-~~~LSs~~~~~~~~wsls 667 (1019)
..-.++.|+|.|.+ +.+.-. |..-+++|....++.+-...+.+ +.+.|.. .-.++....-..-.|.++
T Consensus 245 ~~~M~~~~~~~G~Q-~msiRR-~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 245 TEWMGSLWSPSGNQ-FMSIRR-GKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLP 322 (609)
T ss_pred hhhhheeeCCCCCe-ehhhhc-cCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecC
Confidence 23467889999864 444332 23334455444332222221111 1111111 111122222333345554
Q ss_pred -CCceeEEEeecCCCc----eEEeccccccc--cCCceEEEEecCCccHHHHHhhcCCCchhhHH
Q psy307 668 -DSEQYALQFSETNNK----NYITEKNRNEI--KNGSVLRLAFSASKTADDILSKLSDKNASLEE 725 (1019)
Q Consensus 668 -~~e~~al~~sd~~~~----~~it~~~~~~I--~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~ 725 (1019)
.++.+-++--+.... .+..++.-..+ |..-+..+-|+|.. ..|++..-.+.++||.
T Consensus 323 ~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~--~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 323 RANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHN--NLLVSSGVENSFKLWS 385 (609)
T ss_pred CCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCc--ceEeccchhhheeccc
Confidence 222221111010000 01111111112 57778899999997 6677777788889997
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.4e-11 Score=124.13 Aligned_cols=208 Identities=17% Similarity=0.248 Sum_probs=157.9
Q ss_pred cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC--eEEEEEccccccEeEEEEecCCCEEEEEE
Q psy307 378 HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH--RCVRTYYGHRQAVRDICFNNTGTNFISAG 455 (1019)
Q Consensus 378 h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~--~~~~~l~~H~~~V~sl~fspdg~~l~S~s 455 (1019)
-..+|+|.+|++|+ ..++.+.....|.||...... +..+++..|...|++|+|+|..+.|++|+
T Consensus 9 ~~~pitchAwn~dr--------------t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs 74 (361)
T KOG1523|consen 9 LLEPITCHAWNSDR--------------TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCS 74 (361)
T ss_pred ccCceeeeeecCCC--------------ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEcc
Confidence 45789999999998 578888889999999985444 67889999999999999999999999999
Q ss_pred cCCeEEEEECCC-CceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEE
Q psy307 456 YDRYLKLWDTES-GECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILI 534 (1019)
Q Consensus 456 ~Dg~I~lWDl~t-~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~i 534 (1019)
.|+.-.+|.... ++-..++ +........+++.|+|.++.||+||.-..|.|
T Consensus 75 ~drnayVw~~~~~~~Wkptl----------------------------vLlRiNrAAt~V~WsP~enkFAVgSgar~isV 126 (361)
T KOG1523|consen 75 HDRNAYVWTQPSGGTWKPTL----------------------------VLLRINRAATCVKWSPKENKFAVGSGARLISV 126 (361)
T ss_pred CCCCccccccCCCCeeccce----------------------------eEEEeccceeeEeecCcCceEEeccCccEEEE
Confidence 999999998843 3221111 11112355678888999999999999999999
Q ss_pred EEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCC-----C-------------Cceeeeeecc
Q psy307 535 FSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWK-----T-------------TKLFKKWKAH 596 (1019)
Q Consensus 535 wd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~-----t-------------~~~l~~l~~h 596 (1019)
|-.........-+.++ ......|+++.|+|++-+|++|+.|+.++|+..- . |+++..+...
T Consensus 127 cy~E~ENdWWVsKhik-kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ 205 (361)
T KOG1523|consen 127 CYYEQENDWWVSKHIK-KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS 205 (361)
T ss_pred EEEecccceehhhhhC-CccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC
Confidence 9876543322111111 1123669999999999999999999999999641 1 2334444445
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccc
Q psy307 597 DGVCISTLWHPHEPSKVVTAGWDAATAKVQDAN 629 (1019)
Q Consensus 597 ~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~ 629 (1019)
.+.|..+.|+|+| ..|+-.+.|+++.+.....
T Consensus 206 ggwvh~v~fs~sG-~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 206 GGWVHGVLFSPSG-NRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred CCceeeeEeCCCC-CEeeEecCCCceEEeecCC
Confidence 6789999999999 6899999999997765443
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-10 Score=133.54 Aligned_cols=224 Identities=11% Similarity=0.098 Sum_probs=142.9
Q ss_pred eeeccCCCCeEEEEEcCCCCcEEEEee--CCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCc
Q psy307 329 HTWEGHTKGISAIRWFPKSAHLLLSCS--MDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAH 406 (1019)
Q Consensus 329 ~~l~gH~~~V~~i~fspd~g~lLaSgs--~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~ 406 (1019)
+.+..+...+.+.+|+||+..++++.. .+..|.+|++..+. . ..+......+..+.|+|||. .
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-~-~~l~~~~~~~~~~~~SPDG~-------------~ 256 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-V-RQVASFPRHNGAPAFSPDGS-------------K 256 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-e-EEccCCCCCcCCeEECCCCC-------------E
Confidence 345567778999999997444443332 34579999985432 1 22222233345678888884 3
Q ss_pred EEEEEeCCC--cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcC-Ce--EEEEECCCCceEEEEecCCceE
Q psy307 407 LLLSCSMDC--RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD-RY--LKLWDTESGECISRFTSRKVAY 481 (1019)
Q Consensus 407 ~L~sgs~Dg--~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~D-g~--I~lWDl~t~~~i~~~~~~~~v~ 481 (1019)
++++.+.+| .|.+||+. ++.. ..+..+...+....|+|||+.|+.++.+ +. |.++|+.++.... +..
T Consensus 257 La~~~~~~g~~~I~~~d~~-tg~~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt~----- 328 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLA-SGQI-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR-ITW----- 328 (429)
T ss_pred EEEEEcCCCCcEEEEEECC-CCCE-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE-eec-----
Confidence 444445555 48888984 3333 3344445567888999999998877764 44 4444665554321 111
Q ss_pred EEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC---CeEEEEEccCcccccceeEEeccccccce
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD---NKILIFSALNRFKLNRKKTFEGHMVAGYA 558 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D---g~I~iwd~~~~~~~~~~~~l~gh~~~~~V 558 (1019)
.........|+|+|++|+..+.+ ..|.+||+.++.. ..+... ...
T Consensus 329 -------------------------~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~----~~Lt~~---~~~ 376 (429)
T PRK03629 329 -------------------------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----QVLTDT---FLD 376 (429)
T ss_pred -------------------------CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe----EEeCCC---CCC
Confidence 01123457789999998876644 3688899876532 222221 113
Q ss_pred EEEEEcCCCCEEEEEeCCCe---EEEEeCCCCceeeeeeccCCCEEEEEEcCC
Q psy307 559 CSLDFSPDMSYLISGDADGK---CYIWDWKTTKLFKKWKAHDGVCISTLWHPH 608 (1019)
Q Consensus 559 ~~v~fspdg~~Lasgs~DG~---I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~ 608 (1019)
....|+|||++|+.++.++. +.++++ +|.....+.+|.+.+...+|+|-
T Consensus 377 ~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 377 ETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence 35789999999999887764 677777 56667778888888999999983
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.3e-10 Score=117.71 Aligned_cols=236 Identities=14% Similarity=0.231 Sum_probs=158.4
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC-
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD- 414 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D- 414 (1019)
..+..+.|+.+ ...|..|+.||. +++......++..... ..-.|..+-|+. .+++..+.+
T Consensus 6 ~ti~~~~~Nqd-~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~-~~~~IvEmLFSS----------------SLvaiV~~~q 66 (391)
T KOG2110|consen 6 PTINFIGFNQD-STLLSVGSKDGY-KIFSCSPFEKCFSKDT-EGVSIVEMLFSS----------------SLVAIVSIKQ 66 (391)
T ss_pred cceeeeeeccc-eeEEEccCCCce-eEEecCchHHhhcccC-CCeEEEEeeccc----------------ceeEEEecCC
Confidence 35667777775 677888888874 6676644333221111 122344444443 344444444
Q ss_pred -CcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeee
Q psy307 415 -CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQH 493 (1019)
Q Consensus 415 -g~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~ 493 (1019)
..+++.+++.. ..+..+ .....|.++.++. ++|+++=.+. |.|||+++.+.+.++..-.
T Consensus 67 pr~Lkv~~~Kk~-~~ICe~-~fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~--------------- 126 (391)
T KOG2110|consen 67 PRKLKVVHFKKK-TTICEI-FFPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTP--------------- 126 (391)
T ss_pred CceEEEEEcccC-ceEEEE-ecCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccC---------------
Confidence 34888887333 223222 1345788888864 4566665544 9999999999988876431
Q ss_pred eccCCCceeeeCCCCCcccEEEEcCCCCEEEEE--ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEE
Q psy307 494 LDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ--SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLI 571 (1019)
Q Consensus 494 ~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg--s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~La 571 (1019)
++...+.++++++.+.+++.- ...|.|.+||+.+- .....+..|. +.+-+++|+++|.+||
T Consensus 127 ------------~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl---~~v~~I~aH~--~~lAalafs~~G~llA 189 (391)
T KOG2110|consen 127 ------------PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL---QPVNTINAHK--GPLAALAFSPDGTLLA 189 (391)
T ss_pred ------------CCccceEeeccCCCCceEEecCCCCCceEEEEEcccc---eeeeEEEecC--CceeEEEECCCCCEEE
Confidence 011122233334445566643 23689999999876 4556777887 7899999999999999
Q ss_pred EEeCCCe-EEEEeCCCCceeeeeeccC--CCEEEEEEcCCCCcEEEEEeCCCcEEEEecc
Q psy307 572 SGDADGK-CYIWDWKTTKLFKKWKAHD--GVCISTLWHPHEPSKVVTAGWDAATAKVQDA 628 (1019)
Q Consensus 572 sgs~DG~-I~IWDl~t~~~l~~l~~h~--~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~ 628 (1019)
+++..|+ |||+.+.+|+.+..|+-.. ..|.+++|+|++ .+|++.|..++|.++.-.
T Consensus 190 TASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds-~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 190 TASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS-QFLAASSNTETVHIFKLE 248 (391)
T ss_pred EeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC-CeEEEecCCCeEEEEEec
Confidence 9999996 6999999999999987432 468899999998 588889999999887443
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.7e-11 Score=134.26 Aligned_cols=162 Identities=17% Similarity=0.318 Sum_probs=112.7
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEc--CCCCceeEEEeecCCCCcEEEEEeC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFN--NTGTNFISAIRWFPKSAHLLLSCSM 413 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fs--pdg~~~vs~i~~~p~~~~~L~sgs~ 413 (1019)
..|+|+.|-|.+..+++.+-.+|.+.++|... ....+...|. +++. .+.
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-----------~~~~t~p~~~~~k~~~--------------~f~---- 270 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-----------VCGATAPSYQALKDGD--------------QFA---- 270 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccc-----------cccCCCCcccccCCCC--------------eeE----
Confidence 68999999998888999999999999998621 1111111111 1221 111
Q ss_pred CCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeee
Q psy307 414 DCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQH 493 (1019)
Q Consensus 414 Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~ 493 (1019)
|..|.-.....++..+.--.+.|+..+|+|||++|++.|.||.+||+|..+.+++..+..
T Consensus 271 ---i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS----------------- 330 (636)
T KOG2394|consen 271 ---ILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS----------------- 330 (636)
T ss_pred ---EeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh-----------------
Confidence 111111112223333333455889999999999999999999999999987765543332
Q ss_pred eccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEc
Q psy307 494 LDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564 (1019)
Q Consensus 494 ~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fs 564 (1019)
.-+...|++|||||++|++|+.|.-|.||.+..+ ..+..-.||. .+|..|+|.
T Consensus 331 -------------YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er---RVVARGqGHk--SWVs~VaFD 383 (636)
T KOG2394|consen 331 -------------YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER---RVVARGQGHK--SWVSVVAFD 383 (636)
T ss_pred -------------hccceEEEEEcCCccEEEecCCcceEEEEEeccc---eEEEeccccc--cceeeEeec
Confidence 1245678999999999999999999999999876 3334445665 899999998
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.4e-10 Score=130.61 Aligned_cols=224 Identities=11% Similarity=0.057 Sum_probs=144.8
Q ss_pred ceeeeccCCCCeEEEEEcCCCCcEEEEee---CCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCC
Q psy307 327 QVHTWEGHTKGISAIRWFPKSAHLLLSCS---MDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPK 403 (1019)
Q Consensus 327 ~i~~l~gH~~~V~~i~fspd~g~lLaSgs---~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~ 403 (1019)
..+.+..|...|.+.+|+|| |..|+..+ .+..|.+||+..+. . ..+..+.+.+....|+|||.
T Consensus 193 ~~~~lt~~~~~v~~p~wSpD-G~~lay~s~~~g~~~i~~~dl~~g~-~-~~l~~~~g~~~~~~~SPDG~----------- 258 (435)
T PRK05137 193 NVRYLTDGSSLVLTPRFSPN-RQEITYMSYANGRPRVYLLDLETGQ-R-ELVGNFPGMTFAPRFSPDGR----------- 258 (435)
T ss_pred CcEEEecCCCCeEeeEECCC-CCEEEEEEecCCCCEEEEEECCCCc-E-EEeecCCCcccCcEECCCCC-----------
Confidence 34567788899999999997 55555443 35789999995433 2 33445566677788888884
Q ss_pred CCcEEEEEeCCCc--EEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc-CC--eEEEEECCCCceEEEEecCC
Q psy307 404 SAHLLLSCSMDCR--VKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY-DR--YLKLWDTESGECISRFTSRK 478 (1019)
Q Consensus 404 ~~~~L~sgs~Dg~--I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~-Dg--~I~lWDl~t~~~i~~~~~~~ 478 (1019)
.++++.+.++. |.+||+. ++ ....+..+.+......|+|||+.|+.++. +| .|.+||+.++........
T Consensus 259 --~la~~~~~~g~~~Iy~~d~~-~~-~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~-- 332 (435)
T PRK05137 259 --KVVMSLSQGGNTDIYTMDLR-SG-TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFG-- 332 (435)
T ss_pred --EEEEEEecCCCceEEEEECC-CC-ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecC--
Confidence 45566666666 6666763 33 33556666667778899999999887764 33 578888766543221111
Q ss_pred ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC---CeEEEEEccCcccccceeEEeccccc
Q psy307 479 VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD---NKILIFSALNRFKLNRKKTFEGHMVA 555 (1019)
Q Consensus 479 ~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D---g~I~iwd~~~~~~~~~~~~l~gh~~~ 555 (1019)
...+....|+|+|++|+..+.+ ..|.+||+.++.. ..+.. .
T Consensus 333 -----------------------------~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~----~~lt~-~-- 376 (435)
T PRK05137 333 -----------------------------GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE----RILTS-G-- 376 (435)
T ss_pred -----------------------------CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce----EeccC-C--
Confidence 1123446788999998877643 3688888755421 22211 1
Q ss_pred cceEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCceeeeeeccCCCEEEEEEcCC
Q psy307 556 GYACSLDFSPDMSYLISGDAD------GKCYIWDWKTTKLFKKWKAHDGVCISTLWHPH 608 (1019)
Q Consensus 556 ~~V~~v~fspdg~~Lasgs~D------G~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~ 608 (1019)
..+..+.|+|||+.|+..+.+ ..|+++|+..+.. ..+. ..+.+...+|+|-
T Consensus 377 ~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 377 FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcccCCC
Confidence 225578999999988765542 3588888866554 3444 2445677788873
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.2e-10 Score=132.58 Aligned_cols=223 Identities=14% Similarity=0.156 Sum_probs=143.5
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeC---CCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCC
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSM---DCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKS 404 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~---Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~ 404 (1019)
.+.+..|...+.+.+|+|+ ++.|+.++. +..|.+||+..+. . ..+..+.+...++.|+|||.
T Consensus 196 ~~~lt~~~~~v~~p~wSpD-g~~la~~s~~~~~~~l~~~dl~~g~-~-~~l~~~~g~~~~~~~SpDG~------------ 260 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPD-GKKLAYVSFERGRSAIYVQDLATGQ-R-ELVASFRGINGAPSFSPDGR------------ 260 (433)
T ss_pred ceEeecCCCccccccCCCC-CCEEEEEecCCCCcEEEEEECCCCC-E-EEeccCCCCccCceECCCCC------------
Confidence 3456677888999999997 555555543 3479999995432 2 22333334445677787774
Q ss_pred CcEEEEEeCCC--cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc-CCe--EEEEECCCCceEEEEecCCc
Q psy307 405 AHLLLSCSMDC--RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY-DRY--LKLWDTESGECISRFTSRKV 479 (1019)
Q Consensus 405 ~~~L~sgs~Dg--~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~-Dg~--I~lWDl~t~~~i~~~~~~~~ 479 (1019)
.++++.+.+| .|.+||+.. +. ...+..+.......+|+|||+.|+.++. +|. |.++|+.+++... +...
T Consensus 261 -~l~~~~s~~g~~~Iy~~d~~~-g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~-- 334 (433)
T PRK04922 261 -RLALTLSRDGNPEIYVMDLGS-RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQ-- 334 (433)
T ss_pred -EEEEEEeCCCCceEEEEECCC-CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecC--
Confidence 4555666665 588899843 33 3445556556677899999999887764 444 6666766654322 1100
Q ss_pred eEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC---eEEEEEccCcccccceeEEecccccc
Q psy307 480 AYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN---KILIFSALNRFKLNRKKTFEGHMVAG 556 (1019)
Q Consensus 480 v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg---~I~iwd~~~~~~~~~~~~l~gh~~~~ 556 (1019)
.......+|+|+|++|+..+.++ .|.+||+.++.. ..+... .
T Consensus 335 ----------------------------g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~----~~Lt~~---~ 379 (433)
T PRK04922 335 ----------------------------GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV----RTLTPG---S 379 (433)
T ss_pred ----------------------------CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe----EECCCC---C
Confidence 01223578899999998776443 699999876532 122211 1
Q ss_pred ceEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeeeeccCCCEEEEEEcC
Q psy307 557 YACSLDFSPDMSYLISGDAD---GKCYIWDWKTTKLFKKWKAHDGVCISTLWHP 607 (1019)
Q Consensus 557 ~V~~v~fspdg~~Lasgs~D---G~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp 607 (1019)
....+.|+|||++|+..+.+ +.|+++++. +.....+..+.+.+...+|+|
T Consensus 380 ~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 380 LDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 23457899999988776653 468888884 455666666677788888987
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-10 Score=118.70 Aligned_cols=138 Identities=20% Similarity=0.382 Sum_probs=97.6
Q ss_pred CcEEEEEccCCCeEEEEEcc-ccccEeEEEEecCCCEEEEE--EcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCe
Q psy307 415 CRVKLWEVYKEHRCVRTYYG-HRQAVRDICFNNTGTNFISA--GYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDK 491 (1019)
Q Consensus 415 g~I~IWDl~~~~~~~~~l~~-H~~~V~sl~fspdg~~l~S~--s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~ 491 (1019)
|...+|.++........+.- ..++|.+++|+|+|+.|+.. ..++.|.+||++ ++.+..+..
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~--------------- 100 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGT--------------- 100 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecC---------------
Confidence 45666666555555555543 34579999999999997654 457899999996 444443321
Q ss_pred eeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC---CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCC
Q psy307 492 QHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD---NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMS 568 (1019)
Q Consensus 492 ~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D---g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~ 568 (1019)
..+..+.|+|+|++|++++.+ |.|.+||+.+... +..... ..++.++|||||+
T Consensus 101 -----------------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~---i~~~~~----~~~t~~~WsPdGr 156 (194)
T PF08662_consen 101 -----------------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK---ISTFEH----SDATDVEWSPDGR 156 (194)
T ss_pred -----------------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE---eecccc----CcEEEEEEcCCCC
Confidence 344568889999999998754 6799999986532 333322 3378999999999
Q ss_pred EEEEEeC------CCeEEEEeCCCCceeeee
Q psy307 569 YLISGDA------DGKCYIWDWKTTKLFKKW 593 (1019)
Q Consensus 569 ~Lasgs~------DG~I~IWDl~t~~~l~~l 593 (1019)
+|++++. |..++||+. +|+++...
T Consensus 157 ~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 157 YLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred EEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 9998875 678999997 46665543
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-11 Score=134.98 Aligned_cols=233 Identities=13% Similarity=0.176 Sum_probs=177.0
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
-+-+.+.++. +|..|+.|+.-|.|-.+|. .+.++...+. -...|.++.|..+. .+++.....
T Consensus 130 FGPY~~~ytr-nGrhlllgGrKGHlAa~Dw-~t~~L~~Ei~-v~Etv~Dv~~LHne---------------q~~AVAQK~ 191 (545)
T KOG1272|consen 130 FGPYHLDYTR-NGRHLLLGGRKGHLAAFDW-VTKKLHFEIN-VMETVRDVTFLHNE---------------QFFAVAQKK 191 (545)
T ss_pred cCCeeeeecC-CccEEEecCCccceeeeec-ccceeeeeee-hhhhhhhhhhhcch---------------HHHHhhhhc
Confidence 3566788888 4888888999999999998 4444444433 34578888887765 344556677
Q ss_pred cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeec
Q psy307 416 RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLD 495 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~ 495 (1019)
.+.|||- .+..++.+..| ..|..+.|.|..-.|++++..|.++.-|+.+|+.+..+....
T Consensus 192 y~yvYD~--~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~----------------- 251 (545)
T KOG1272|consen 192 YVYVYDN--NGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA----------------- 251 (545)
T ss_pred eEEEecC--CCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC-----------------
Confidence 8888884 55555555554 457888999988889999999999999999999888776542
Q ss_pred cCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC
Q psy307 496 IPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA 575 (1019)
Q Consensus 496 ~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~ 575 (1019)
+.+..++-+|-.-.+-+|...|+|.+|+......+ ..+-.|. ++|.++++.++|+|++|.+.
T Consensus 252 -------------G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL---vKiLcH~--g~V~siAv~~~G~YMaTtG~ 313 (545)
T KOG1272|consen 252 -------------GRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL---VKILCHR--GPVSSIAVDRGGRYMATTGL 313 (545)
T ss_pred -------------CccchhhcCCccceEEEcCCCceEEecCCCCcchH---HHHHhcC--CCcceEEECCCCcEEeeccc
Confidence 23344555677778889999999999998877443 4455666 78999999999999999999
Q ss_pred CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEecc
Q psy307 576 DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDA 628 (1019)
Q Consensus 576 DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~ 628 (1019)
|..++|||++....+.++.. .-+...+++|..| ++++|....+.+|-|.
T Consensus 314 Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg---lLA~~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 314 DRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG---LLALSYGDHVQIWKDA 362 (545)
T ss_pred ccceeEeeeccccccceeec-CCCcccccccccc---ceeeecCCeeeeehhh
Confidence 99999999999887776654 3356788888766 5556666677777554
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-09 Score=114.01 Aligned_cols=180 Identities=16% Similarity=0.237 Sum_probs=128.8
Q ss_pred CceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEE
Q psy307 308 VGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICF 387 (1019)
Q Consensus 308 ~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~f 387 (1019)
..+-+|+.. ..+++.++. -..+|.+|++.++ .|++ -..+.|.||...++.+.++.+..- -
T Consensus 75 NkviIWDD~-------k~~~i~el~-f~~~I~~V~l~r~---riVv-vl~~~I~VytF~~n~k~l~~~et~--------~ 134 (346)
T KOG2111|consen 75 NKVIIWDDL-------KERCIIELS-FNSEIKAVKLRRD---RIVV-VLENKIYVYTFPDNPKLLHVIETR--------S 134 (346)
T ss_pred ceEEEEecc-------cCcEEEEEE-eccceeeEEEcCC---eEEE-EecCeEEEEEcCCChhheeeeecc--------c
Confidence 467788744 234455554 3568999999885 3333 346899999986666655554322 2
Q ss_pred cCCCCceeEEEeecCCCCc-EEE-EEeCCCcEEEEEccCCCe-EEEEEccccccEeEEEEecCCCEEEEEEcCCe-EEEE
Q psy307 388 NNTGTNFISAIRWFPKSAH-LLL-SCSMDCRVKLWEVYKEHR-CVRTYYGHRQAVRDICFNNTGTNFISAGYDRY-LKLW 463 (1019)
Q Consensus 388 spdg~~~vs~i~~~p~~~~-~L~-sgs~Dg~I~IWDl~~~~~-~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~-I~lW 463 (1019)
+|.| .|+..|.... +|+ -|-.-|.|+|-|+..... ....+.+|.+.|.|++.+.+|..++|+|..|+ ||||
T Consensus 135 NPkG-----lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIF 209 (346)
T KOG2111|consen 135 NPKG-----LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIF 209 (346)
T ss_pred CCCc-----eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEE
Confidence 2333 1222233223 333 245569999999955444 46788999999999999999999999999998 8999
Q ss_pred ECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCc
Q psy307 464 DTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNR 540 (1019)
Q Consensus 464 Dl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~ 540 (1019)
|+.+|..+..+.-+. ....+.+++|||++.+|++.|..|+++||.++..
T Consensus 210 dt~~g~~l~E~RRG~----------------------------d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 210 DTEDGTLLQELRRGV----------------------------DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EcCCCcEeeeeecCC----------------------------chheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 999999998886432 1134567777888999999999999999998764
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.3e-10 Score=119.69 Aligned_cols=232 Identities=16% Similarity=0.185 Sum_probs=162.9
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
+.+..+-+++|-.++... ..|++|-.+|.+.+|....+. .|.....-++..+. +..+.-++..+.+
T Consensus 98 ~~~~~l~~~~I~gl~~~d---g~Litc~~sG~l~~~~~k~~d-------~hss~l~~la~g~g----~~~~r~~~~~p~I 163 (412)
T KOG3881|consen 98 AKTVSLGTKSIKGLKLAD---GTLITCVSSGNLQVRHDKSGD-------LHSSKLIKLATGPG----LYDVRQTDTDPYI 163 (412)
T ss_pred ccccccccccccchhhcC---CEEEEEecCCcEEEEeccCCc-------cccccceeeecCCc----eeeeccCCCCCce
Confidence 445566777888887654 368888999999999984221 12222222222211 2334445566688
Q ss_pred EEEEeCC--CcEEEEEccCCCeEEEEEcc---------ccccEeEEEEecC--CCEEEEEEcCCeEEEEECCCCceEEEE
Q psy307 408 LLSCSMD--CRVKLWEVYKEHRCVRTYYG---------HRQAVRDICFNNT--GTNFISAGYDRYLKLWDTESGECISRF 474 (1019)
Q Consensus 408 L~sgs~D--g~I~IWDl~~~~~~~~~l~~---------H~~~V~sl~fspd--g~~l~S~s~Dg~I~lWDl~t~~~i~~~ 474 (1019)
+++|+.. ..+.|||+... +.+..-+. -.-+++++.|-+. ...|++++.-+.|++||++.++
T Consensus 164 va~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR----- 237 (412)
T KOG3881|consen 164 VATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR----- 237 (412)
T ss_pred EecCchhcccceeeeecccc-eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC-----
Confidence 9999999 89999999555 33333221 1235678889887 7789999999999999998654
Q ss_pred ecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEecccc
Q psy307 475 TSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMV 554 (1019)
Q Consensus 475 ~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~ 554 (1019)
.++.++.| ..+.++++...|+|++|++|..-|.+..||++.+... ...+.+..
T Consensus 238 ---RPV~~fd~---------------------~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~--g~~~kg~t- 290 (412)
T KOG3881|consen 238 ---RPVAQFDF---------------------LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL--GCGLKGIT- 290 (412)
T ss_pred ---cceeEecc---------------------ccCcceeeeecCCCcEEEEecccchhheecccCceee--ccccCCcc-
Confidence 22223222 2467888999999999999999999999999987432 22355555
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCC
Q psy307 555 AGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPH 608 (1019)
Q Consensus 555 ~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~ 608 (1019)
|.+.++..+|.++++++++-|..|+|+|+++.+++...-. ...++++.+.++
T Consensus 291 -Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 291 -GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDD 342 (412)
T ss_pred -CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecCC
Confidence 7799999999999999999999999999999877765432 123456655443
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.9e-11 Score=131.60 Aligned_cols=189 Identities=20% Similarity=0.209 Sum_probs=130.5
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEc----cccccEeEEEEecCCC-EEEEEEcCCeEEEEECCCCceEEEEecCCce
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYY----GHRQAVRDICFNNTGT-NFISAGYDRYLKLWDTESGECISRFTSRKVA 480 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~----~H~~~V~sl~fspdg~-~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v 480 (1019)
.-++.|-.-|.|.+.|... ......+. -....|+|+.|-|.+. .|+.+-.+|.+.++|..-- .....
T Consensus 186 ~dllIGf~tGqvq~idp~~-~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-------~~~t~ 257 (636)
T KOG2394|consen 186 LDLLIGFTTGQVQLIDPIN-FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-------CGATA 257 (636)
T ss_pred cceEEeeccCceEEecchh-hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-------ccCCC
Confidence 4577888889999988733 11111111 1247899999998654 5777888999999986311 11111
Q ss_pred EEEEEecCCCeeeeccCC-----CceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccc
Q psy307 481 YCVKFHPDEDKQHLDIPV-----DMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVA 555 (1019)
Q Consensus 481 ~~v~~~p~~~~~~~~~~~-----~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~ 555 (1019)
.+....+++....+.... ....-+......|..++|+|||++||+.+.||.++|||..+...+...+.+-
T Consensus 258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF----- 332 (636)
T KOG2394|consen 258 PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF----- 332 (636)
T ss_pred CcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc-----
Confidence 111222222222221100 1111112233488999999999999999999999999998764332333332
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcC
Q psy307 556 GYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHP 607 (1019)
Q Consensus 556 ~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp 607 (1019)
+...|++|||||+||++|+.|..|.||.+..++.+..=++|...|..|+|.|
T Consensus 333 GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 333 GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 4488999999999999999999999999999999999999999999999985
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.1e-09 Score=113.81 Aligned_cols=156 Identities=19% Similarity=0.309 Sum_probs=119.9
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecc---cCccEeEEEEcCCCCceeEEEeecCCCCcEEEE-E
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG---HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLS-C 411 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g---h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~s-g 411 (1019)
..|.+|.++. +.|+++-.+. |.|+|+ .+.+.++++.. +..++.++.+++.+ .+|+- +
T Consensus 88 t~IL~VrmNr---~RLvV~Lee~-IyIydI-~~MklLhTI~t~~~n~~gl~AlS~n~~n--------------~ylAyp~ 148 (391)
T KOG2110|consen 88 TSILAVRMNR---KRLVVCLEES-IYIYDI-KDMKLLHTIETTPPNPKGLCALSPNNAN--------------CYLAYPG 148 (391)
T ss_pred CceEEEEEcc---ceEEEEEccc-EEEEec-ccceeehhhhccCCCccceEeeccCCCC--------------ceEEecC
Confidence 4788888865 3566655544 999999 56677766543 44455555555544 23332 2
Q ss_pred e-CCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCe-EEEEECCCCceEEEEecCCceEEEEEecCC
Q psy307 412 S-MDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRY-LKLWDTESGECISRFTSRKVAYCVKFHPDE 489 (1019)
Q Consensus 412 s-~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~-I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~ 489 (1019)
+ ..|.|.|||+ ..-+.+..+..|.+.+.+++|+++|.+|+|+|..|+ |||+.+..|+.+..|+-+..+
T Consensus 149 s~t~GdV~l~d~-~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~--------- 218 (391)
T KOG2110|consen 149 STTSGDVVLFDT-INLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYP--------- 218 (391)
T ss_pred CCCCceEEEEEc-ccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCcee---------
Confidence 2 3589999999 777888889999999999999999999999999998 799999999999888765321
Q ss_pred CeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccC
Q psy307 490 DKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALN 539 (1019)
Q Consensus 490 ~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~ 539 (1019)
..|.+++|+|++++|++.|..++|++|.+..
T Consensus 219 -------------------~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 219 -------------------VSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred -------------------eEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 2356788899999999999999999998864
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.4e-09 Score=111.46 Aligned_cols=234 Identities=13% Similarity=0.192 Sum_probs=148.5
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCC--eEEEEEcCCCCcEEEEeeCC------CeEEEEe
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKG--ISAIRWFPKSAHLLLSCSMD------CRVKLWE 364 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~--V~~i~fspd~g~lLaSgs~D------g~I~IWd 364 (1019)
.+..+-..++.+ .|.+.++++..|... ...-.-+.++ +.-+-|- ..-+.+.||.+ +.|.|||
T Consensus 12 s~NQD~ScFava-~~~Gfriyn~~P~ke-------~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 12 SFNQDHSCFAVA-TDTGFRIYNCDPFKE-------SASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred EEccCCceEEEE-ecCceEEEecCchhh-------hhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEe
Confidence 344445555555 567789998875221 1122222222 2222222 23444555544 6799999
Q ss_pred cCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccc--cccEeEE
Q psy307 365 VYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGH--RQAVRDI 442 (1019)
Q Consensus 365 l~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H--~~~V~sl 442 (1019)
= ...+++.++. ...+|.++.+.++. | +.-..+.|.||......+.++.+..- ...+.++
T Consensus 82 D-~k~~~i~el~-f~~~I~~V~l~r~r----------------i-Vvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~ 142 (346)
T KOG2111|consen 82 D-LKERCIIELS-FNSEIKAVKLRRDR----------------I-VVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSL 142 (346)
T ss_pred c-ccCcEEEEEE-eccceeeEEEcCCe----------------E-EEEecCeEEEEEcCCChhheeeeecccCCCceEee
Confidence 4 4555665554 46789999998764 2 33356789999986566555555332 2223333
Q ss_pred EEecCCCEEEE-EEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCC
Q psy307 443 CFNNTGTNFIS-AGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK 521 (1019)
Q Consensus 443 ~fspdg~~l~S-~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~ 521 (1019)
+-+.+...|+. |-.-|.|+|-|+...+.- ...+...|...|.+++++-+|.
T Consensus 143 ~~~~~k~~LafPg~k~GqvQi~dL~~~~~~----------------------------~p~~I~AH~s~Iacv~Ln~~Gt 194 (346)
T KOG2111|consen 143 CPTSNKSLLAFPGFKTGQVQIVDLASTKPN----------------------------APSIINAHDSDIACVALNLQGT 194 (346)
T ss_pred cCCCCceEEEcCCCccceEEEEEhhhcCcC----------------------------CceEEEcccCceeEEEEcCCcc
Confidence 32222233333 223467777776543220 1133456778889999999999
Q ss_pred EEEEEecCCe-EEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy307 522 WLACQSMDNK-ILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKT 586 (1019)
Q Consensus 522 ~Lasgs~Dg~-I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t 586 (1019)
.+|++|..|+ |+|||..++..+ ..+........|.+++|||++.+||+.|..|+|+|+.++.
T Consensus 195 ~vATaStkGTLIRIFdt~~g~~l---~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 195 LVATASTKGTLIRIFDTEDGTLL---QELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEeccCcEEEEEEEcCCCcEe---eeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 9999999996 799999998554 5555444457799999999999999999999999998865
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-09 Score=129.70 Aligned_cols=145 Identities=20% Similarity=0.305 Sum_probs=118.9
Q ss_pred CCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec
Q psy307 297 QGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY 376 (1019)
Q Consensus 297 ~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~ 376 (1019)
.--+++.+.--+.+.+|...... +++ .+.||.+.|.++.|+.+ |++++|.|+|.++++|++.+......+.-
T Consensus 144 ~~~~i~~gsv~~~iivW~~~~dn------~p~-~l~GHeG~iF~i~~s~d-g~~i~s~SdDRsiRlW~i~s~~~~~~~~f 215 (967)
T KOG0974|consen 144 EELYIASGSVFGEIIVWKPHEDN------KPI-RLKGHEGSIFSIVTSLD-GRYIASVSDDRSIRLWPIDSREVLGCTGF 215 (967)
T ss_pred cEEEEEeccccccEEEEeccccC------Ccc-eecccCCceEEEEEccC-CcEEEEEecCcceeeeecccccccCcccc
Confidence 33456677777889999776221 112 68999999999999995 89999999999999999966555445788
Q ss_pred ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcccc-ccEeEEEEecCCCEEEEEE
Q psy307 377 GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHR-QAVRDICFNNTGTNFISAG 455 (1019)
Q Consensus 377 gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~-~~V~sl~fspdg~~l~S~s 455 (1019)
+|+..|..++|.|. .+++++.|.+.++|+. .+.....+.+|. ..|+.++..++....+|++
T Consensus 216 gHsaRvw~~~~~~n----------------~i~t~gedctcrvW~~--~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g 277 (967)
T KOG0974|consen 216 GHSARVWACCFLPN----------------RIITVGEDCTCRVWGV--NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGG 277 (967)
T ss_pred cccceeEEEEeccc----------------eeEEeccceEEEEEec--ccceehhhhhhhhcceeEEEEcCCceEEEeec
Confidence 99999999999874 6999999999999975 444555888886 5699999999998999999
Q ss_pred cCCeEEEEECCC
Q psy307 456 YDRYLKLWDTES 467 (1019)
Q Consensus 456 ~Dg~I~lWDl~t 467 (1019)
.|+.+++||+..
T Consensus 278 ~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 278 NDSTLKLWDLNG 289 (967)
T ss_pred cCcchhhhhhhc
Confidence 999999999743
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.9e-10 Score=116.78 Aligned_cols=254 Identities=20% Similarity=0.283 Sum_probs=168.6
Q ss_pred CCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcE----EEEEecccCc------------cEeEEEEcCCCCceeEEE
Q psy307 335 TKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERR----CVRTYYGHRQ------------AVRDICFNNTGTNFISAI 398 (1019)
Q Consensus 335 ~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~----~~~~~~gh~~------------~V~~i~fspdg~~~vs~i 398 (1019)
.+-|.+|.|.. .|.+|+||..+|.|.++.-....+ ....++.|.. .|..|.|.+++
T Consensus 25 adiis~vef~~-~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~------- 96 (433)
T KOG1354|consen 25 ADIISAVEFDH-YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDG------- 96 (433)
T ss_pred hcceeeEEeec-ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCC-------
Confidence 34688999988 599999999999999997643332 3344555542 35555555544
Q ss_pred eecCCCCcEEEEEeCCCcEEEEEccCCCe----------------------------------EEEEE-ccccccEeEEE
Q psy307 399 RWFPKSAHLLLSCSMDCRVKLWEVYKEHR----------------------------------CVRTY-YGHRQAVRDIC 443 (1019)
Q Consensus 399 ~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~----------------------------------~~~~l-~~H~~~V~sl~ 443 (1019)
+...++..+.|.+|++|.++..+. +.+.+ .+|+--|++|+
T Consensus 97 -----n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS 171 (433)
T KOG1354|consen 97 -----NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSIS 171 (433)
T ss_pred -----CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeee
Confidence 235778888999999999853221 11111 46888999999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC-CCE
Q psy307 444 FNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN-NKW 522 (1019)
Q Consensus 444 fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd-g~~ 522 (1019)
++.|+..++|+ .|=.|.+|+++-...-. .-|..-|.. ....+.-|++..|||. .++
T Consensus 172 ~NsD~Et~lSA-DdLRINLWnlei~d~sF--------nIVDIKP~n--------------mEeLteVITsaEFhp~~cn~ 228 (433)
T KOG1354|consen 172 VNSDKETFLSA-DDLRINLWNLEIIDQSF--------NIVDIKPAN--------------MEELTEVITSAEFHPHHCNV 228 (433)
T ss_pred ecCccceEeec-cceeeeeccccccCCce--------eEEEccccC--------------HHHHHHHHhhhccCHhHccE
Confidence 99999988876 57889999986322111 111111110 0011233566777775 467
Q ss_pred EEEEecCCeEEEEEccCcccc-cceeEEeccc----------cccceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCcee
Q psy307 523 LACQSMDNKILIFSALNRFKL-NRKKTFEGHM----------VAGYACSLDFSPDMSYLISGDADGKCYIWDW-KTTKLF 590 (1019)
Q Consensus 523 Lasgs~Dg~I~iwd~~~~~~~-~~~~~l~gh~----------~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl-~t~~~l 590 (1019)
++-.+..|+|++.|++..... ...+.+.... .-..|..+.|+++|+|+++-+.- +|++||+ ...+++
T Consensus 229 f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv 307 (433)
T KOG1354|consen 229 FVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPV 307 (433)
T ss_pred EEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcc
Confidence 788889999999999843111 0111111110 11458899999999999988654 7999999 566788
Q ss_pred eeeeccCC------------C---EEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 591 KKWKAHDG------------V---CISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 591 ~~l~~h~~------------~---V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
.+++.|.. . -..++|+-++ +.+.|||..+..+++-
T Consensus 308 ~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~-~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 308 ETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND-SYVMTGSYNNVFRVFN 357 (433)
T ss_pred eEEeehHhHHHHHHHHhhccchhheeEEEEcCCc-ceEecccccceEEEec
Confidence 88877742 1 2457899877 6899999988776664
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-08 Score=117.21 Aligned_cols=305 Identities=15% Similarity=0.091 Sum_probs=173.0
Q ss_pred eeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCcc
Q psy307 302 LHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQA 381 (1019)
Q Consensus 302 ~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~ 381 (1019)
++-..++.|.+.+.. ..+.+.++......-..+.|+|| ++++++++.||.|.++|+. ..+.+.++.... .
T Consensus 10 V~~~~~~~v~viD~~-------t~~~~~~i~~~~~~h~~~~~s~D-gr~~yv~~rdg~vsviD~~-~~~~v~~i~~G~-~ 79 (369)
T PF02239_consen 10 VVERGSGSVAVIDGA-------TNKVVARIPTGGAPHAGLKFSPD-GRYLYVANRDGTVSVIDLA-TGKVVATIKVGG-N 79 (369)
T ss_dssp EEEGGGTEEEEEETT-------T-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETT-SSSEEEEEE-SS-E
T ss_pred EEecCCCEEEEEECC-------CCeEEEEEcCCCCceeEEEecCC-CCEEEEEcCCCeEEEEECC-cccEEEEEecCC-C
Confidence 345556778887654 23567777765444345778896 7788888999999999994 455677766543 4
Q ss_pred EeEEEEcCCCCceeEEEeecCCCCcEEE-EEeCCCcEEEEEccCCCeEEEEEccc-------cccEeEEEEecCCCEEEE
Q psy307 382 VRDICFNNTGTNFISAIRWFPKSAHLLL-SCSMDCRVKLWEVYKEHRCVRTYYGH-------RQAVRDICFNNTGTNFIS 453 (1019)
Q Consensus 382 V~~i~fspdg~~~vs~i~~~p~~~~~L~-sgs~Dg~I~IWDl~~~~~~~~~l~~H-------~~~V~sl~fspdg~~l~S 453 (1019)
..++++++|| ++++ ++..++.+.++|. .+.+.+..+... ...+.+|..+|.+..++.
T Consensus 80 ~~~i~~s~DG--------------~~~~v~n~~~~~v~v~D~-~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv 144 (369)
T PF02239_consen 80 PRGIAVSPDG--------------KYVYVANYEPGTVSVIDA-ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVV 144 (369)
T ss_dssp EEEEEE--TT--------------TEEEEEEEETTEEEEEET-TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEE
T ss_pred cceEEEcCCC--------------CEEEEEecCCCceeEecc-ccccceeecccccccccccCCCceeEEecCCCCEEEE
Confidence 6789999999 4555 4557899999998 555566655432 346788888998887777
Q ss_pred EEcC-CeEEEEECCCCce--EEEEecCCceEEEEEecCCCeeeeccCC----------CceeeeC----CCCCcccEE-E
Q psy307 454 AGYD-RYLKLWDTESGEC--ISRFTSRKVAYCVKFHPDEDKQHLDIPV----------DMKYIAD----PTMHSMPAV-T 515 (1019)
Q Consensus 454 ~s~D-g~I~lWDl~t~~~--i~~~~~~~~v~~v~~~p~~~~~~~~~~~----------~~~~i~~----~~~~~i~~v-~ 515 (1019)
.-.| +.|-+.|....+. ...+.....+....|.|++......... ..+.... ...+..+.. -
T Consensus 145 ~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~ 224 (369)
T PF02239_consen 145 NLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF 224 (369)
T ss_dssp EETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE
T ss_pred EEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc
Confidence 6665 7888889876553 3556677888899999998876552110 0111110 001111111 1
Q ss_pred EcCCCCE-EEEE---------ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEE----eCCCeEEE
Q psy307 516 SSPNNKW-LACQ---------SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISG----DADGKCYI 581 (1019)
Q Consensus 516 ~spdg~~-Lasg---------s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasg----s~DG~I~I 581 (1019)
.+|.... .+++ -..+.+.+||..+. ..++.+.... +. .-+..+|++++|... ...++|.+
T Consensus 225 php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w---kvv~~I~~~G--~g-lFi~thP~s~~vwvd~~~~~~~~~v~v 298 (369)
T PF02239_consen 225 PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW---KVVKTIPTQG--GG-LFIKTHPDSRYVWVDTFLNPDADTVQV 298 (369)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT---SEEEEEE-SS--SS---EE--TT-SEEEEE-TT-SSHT-EEE
T ss_pred cCCCcceEEeeccccceecccccCCccccchhhcC---eEEEEEECCC--Cc-ceeecCCCCccEEeeccCCCCCceEEE
Confidence 2333211 1222 22223344554443 3445555432 33 568889999999987 45589999
Q ss_pred EeCCCCceeeeeeccC-CCEEEEEEcCCCCcEEEEEeCCC-cEEEEeccceeeeeeecc
Q psy307 582 WDWKTTKLFKKWKAHD-GVCISTLWHPHEPSKVVTAGWDA-ATAKVQDANIVKIAVEME 638 (1019)
Q Consensus 582 WDl~t~~~l~~l~~h~-~~V~sl~~sp~~~~~l~s~s~Dg-~I~iwwd~~i~ki~~e~~ 638 (1019)
+|.++.+.+.++.... ..+..+.|+++|....+|.-.++ .| +++|....++.....
T Consensus 299 iD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i-~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 299 IDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAI-VVYDAKTLKEKKRIP 356 (369)
T ss_dssp EECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEE-EEEETTTTEEEEEEE
T ss_pred EECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEE-EEEECCCcEEEEEEE
Confidence 9999998888876433 35899999999965445444333 45 566777666665444
|
... |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-09 Score=126.78 Aligned_cols=207 Identities=14% Similarity=0.150 Sum_probs=125.8
Q ss_pred CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC---CCcEEEEEccCCCeEEEEEcc
Q psy307 358 CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM---DCRVKLWEVYKEHRCVRTYYG 434 (1019)
Q Consensus 358 g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~---Dg~I~IWDl~~~~~~~~~l~~ 434 (1019)
..|.+||. .+...+.+..+...+.+.+|+|||. .|+..+. ...|.+||+..+ ... .+..
T Consensus 176 ~~L~~~D~--dG~~~~~l~~~~~~v~~p~wSPDG~--------------~la~~s~~~~~~~I~~~dl~~g-~~~-~l~~ 237 (427)
T PRK02889 176 YQLQISDA--DGQNAQSALSSPEPIISPAWSPDGT--------------KLAYVSFESKKPVVYVHDLATG-RRR-VVAN 237 (427)
T ss_pred cEEEEECC--CCCCceEeccCCCCcccceEcCCCC--------------EEEEEEccCCCcEEEEEECCCC-CEE-Eeec
Confidence 45666665 3333445556778899999999984 4544443 245999999543 322 2333
Q ss_pred ccccEeEEEEecCCCEEE-EEEcCCeEEEEE--CCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcc
Q psy307 435 HRQAVRDICFNNTGTNFI-SAGYDRYLKLWD--TESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSM 511 (1019)
Q Consensus 435 H~~~V~sl~fspdg~~l~-S~s~Dg~I~lWD--l~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i 511 (1019)
..+.+.+..|+|||+.|+ +.+.++...||. +.++.. ..+.. +....
T Consensus 238 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~------------------------------~~~~~ 286 (427)
T PRK02889 238 FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGL-RRLTQ------------------------------SSGID 286 (427)
T ss_pred CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCc-EECCC------------------------------CCCCC
Confidence 345566789999999876 567788766665 433331 11111 11123
Q ss_pred cEEEEcCCCCEEEEEec-CCeEEEEEcc--CcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC---eEEEEeCC
Q psy307 512 PAVTSSPNNKWLACQSM-DNKILIFSAL--NRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG---KCYIWDWK 585 (1019)
Q Consensus 512 ~~v~~spdg~~Lasgs~-Dg~I~iwd~~--~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG---~I~IWDl~ 585 (1019)
....|+|||+.|+..+. +|...+|.+. ++. .. ...+.+ ......+|||||++|+..+.++ .|++||+.
T Consensus 287 ~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~-~lt~~g----~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~ 360 (427)
T PRK02889 287 TEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-AQ-RVTFTG----SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLA 360 (427)
T ss_pred cCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-eE-EEecCC----CCcCceEECCCCCEEEEEEccCCcEEEEEEECC
Confidence 45678999998886654 4556666543 331 11 112222 2344678999999998777654 69999998
Q ss_pred CCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCc
Q psy307 586 TTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAA 621 (1019)
Q Consensus 586 t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~ 621 (1019)
+++... +..+ .......|+|++..++++....|.
T Consensus 361 ~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~ 394 (427)
T PRK02889 361 TGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGR 394 (427)
T ss_pred CCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCC
Confidence 887543 3322 234678999999544444444443
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=7e-10 Score=115.36 Aligned_cols=152 Identities=22% Similarity=0.409 Sum_probs=102.4
Q ss_pred EEEEcCCCCcEEEEeeC---------CCeEEEEecCCCcEEEEEecc-cCccEeEEEEcCCCCceeEEEeecCCCCcE-E
Q psy307 340 AIRWFPKSAHLLLSCSM---------DCRVKLWEVYKERRCVRTYYG-HRQAVRDICFNNTGTNFISAIRWFPKSAHL-L 408 (1019)
Q Consensus 340 ~i~fspd~g~lLaSgs~---------Dg~I~IWdl~~~~~~~~~~~g-h~~~V~~i~fspdg~~~vs~i~~~p~~~~~-L 408 (1019)
.+.|+|.+..+++.... -|...||.+.........+.- ..++|.+++|+|+|. .+ +
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~-------------~fav 76 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGN-------------EFAV 76 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCC-------------EEEE
Confidence 47788865555554441 244555655333333333322 334577777777774 33 3
Q ss_pred EEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcC---CeEEEEECCCCceEEEEecCCceEEEEE
Q psy307 409 LSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD---RYLKLWDTESGECISRFTSRKVAYCVKF 485 (1019)
Q Consensus 409 ~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~D---g~I~lWDl~t~~~i~~~~~~~~v~~v~~ 485 (1019)
++|..++.|.+||++ ...+..+ +...++.|.|+|+|++|++++.+ |.|.+||+++.+.+..+...
T Consensus 77 i~g~~~~~v~lyd~~--~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-------- 144 (194)
T PF08662_consen 77 IYGSMPAKVTLYDVK--GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-------- 144 (194)
T ss_pred EEccCCcccEEEcCc--ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC--------
Confidence 345677899999994 4445544 35677899999999999998754 67999999988777655432
Q ss_pred ecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec------CCeEEEEEccCc
Q psy307 486 HPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM------DNKILIFSALNR 540 (1019)
Q Consensus 486 ~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~------Dg~I~iwd~~~~ 540 (1019)
.+..++|+|+|++|++++. |+.++||+....
T Consensus 145 ------------------------~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 145 ------------------------DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred ------------------------cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 2456788889999998864 788999998643
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.5e-09 Score=121.63 Aligned_cols=205 Identities=12% Similarity=0.033 Sum_probs=131.7
Q ss_pred CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe---CCCcEEEEEccCCCeEEEEEcc
Q psy307 358 CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS---MDCRVKLWEVYKEHRCVRTYYG 434 (1019)
Q Consensus 358 g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs---~Dg~I~IWDl~~~~~~~~~l~~ 434 (1019)
..|.+||.. +...+.+..|...+.+.+|+|||. .|+..+ .+..|.+||+..+ .. ..+..
T Consensus 182 ~~l~~~d~d--g~~~~~lt~~~~~v~~p~wSpDG~--------------~lay~s~~~g~~~i~~~dl~~g-~~-~~l~~ 243 (435)
T PRK05137 182 KRLAIMDQD--GANVRYLTDGSSLVLTPRFSPNRQ--------------EITYMSYANGRPRVYLLDLETG-QR-ELVGN 243 (435)
T ss_pred eEEEEECCC--CCCcEEEecCCCCeEeeEECCCCC--------------EEEEEEecCCCCEEEEEECCCC-cE-EEeec
Confidence 478888873 233455667888899999999994 444433 3468999999443 32 34455
Q ss_pred ccccEeEEEEecCCCEEE-EEEcCCe--EEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcc
Q psy307 435 HRQAVRDICFNNTGTNFI-SAGYDRY--LKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSM 511 (1019)
Q Consensus 435 H~~~V~sl~fspdg~~l~-S~s~Dg~--I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i 511 (1019)
+.+.+.+.+|+|||+.|+ +.+.++. |.+||+.++.... +... ....
T Consensus 244 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~------------------------------~~~~ 292 (435)
T PRK05137 244 FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDS------------------------------PAID 292 (435)
T ss_pred CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-ccCC------------------------------CCcc
Confidence 666778889999999875 5555655 7777888775432 2211 1123
Q ss_pred cEEEEcCCCCEEEEEec-CC--eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC---CeEEEEeCC
Q psy307 512 PAVTSSPNNKWLACQSM-DN--KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD---GKCYIWDWK 585 (1019)
Q Consensus 512 ~~v~~spdg~~Lasgs~-Dg--~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D---G~I~IWDl~ 585 (1019)
....|+|+|+.|+..+. +| .|+++|+.++.. ..+..+. +.+..+.|+|||++|+..+.+ ..|.+||+.
T Consensus 293 ~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~----~~lt~~~--~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~ 366 (435)
T PRK05137 293 TSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP----RRISFGG--GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD 366 (435)
T ss_pred CceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe----EEeecCC--CcccCeEECCCCCEEEEEEcCCCceEEEEEECC
Confidence 34678999998887764 33 688888765421 2222221 345668899999999876643 368889986
Q ss_pred CCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCC
Q psy307 586 TTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619 (1019)
Q Consensus 586 t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~D 619 (1019)
++.. ..+.. ...+....|+|+|..+++++...
T Consensus 367 ~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~~~ 398 (435)
T PRK05137 367 GSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQTP 398 (435)
T ss_pred CCce-EeccC-CCCCCCCeECCCCCEEEEEEccC
Confidence 5543 33322 23467889999995444444433
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.5e-10 Score=124.35 Aligned_cols=273 Identities=15% Similarity=0.222 Sum_probs=196.9
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCC-cEEEEeeCCCeEEEEecCCCcEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSA-HLLLSCSMDCRVKLWEVYKERRC 371 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g-~lLaSgs~Dg~I~IWdl~~~~~~ 371 (1019)
.+...|..+++++.|..|.+|++..... .+.-..||...|....|.|..+ .-+++++.||.|++=.+...+.+
T Consensus 149 ~FN~~Gd~l~SgSDD~~vv~WdW~~~~~------~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~ 222 (559)
T KOG1334|consen 149 HFNQRGDVLASGSDDLQVVVWDWVSGSP------KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV 222 (559)
T ss_pred eecccCceeeccCccceEEeehhhccCc------ccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccce
Confidence 4677899999999999999999874332 2344578999999999999644 46899999999999888655544
Q ss_pred E--EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe--EEEEEccccc---cEeEEEE
Q psy307 372 V--RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR--CVRTYYGHRQ---AVRDICF 444 (1019)
Q Consensus 372 ~--~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~--~~~~l~~H~~---~V~sl~f 444 (1019)
. ..+..|.++|..++.-|+.+ .-|.+++.|+.+.-.|++.... ....-..+.. ...+|+.
T Consensus 223 e~t~rl~~h~g~vhklav~p~sp-------------~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 223 ENTKRLAPHEGPVHKLAVEPDSP-------------KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV 289 (559)
T ss_pred ecceecccccCccceeeecCCCC-------------CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence 4 34667999999999888775 7899999999999999954432 1112223333 5678889
Q ss_pred ecCCC-EEEEEEcCCeEEEEECCCCce------EEEE-------ecCCceEEEEEecCCCeeeeccCCCceee-------
Q psy307 445 NNTGT-NFISAGYDRYLKLWDTESGEC------ISRF-------TSRKVAYCVKFHPDEDKQHLDIPVDMKYI------- 503 (1019)
Q Consensus 445 spdg~-~l~S~s~Dg~I~lWDl~t~~~------i~~~-------~~~~~v~~v~~~p~~~~~~~~~~~~~~~i------- 503 (1019)
.|... .|++++.|..+++||.+.-.. +..+ .....|.|++|+.++..+.........++
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~ 369 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD 369 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc
Confidence 98776 699999999999999864321 2222 12345789999866654433111111111
Q ss_pred -----------------eCCC--CCcccEEE-EcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEE
Q psy307 504 -----------------ADPT--MHSMPAVT-SSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDF 563 (1019)
Q Consensus 504 -----------------~~~~--~~~i~~v~-~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~f 563 (1019)
+..| ...|..+- |-|...++++||.-|.|.||+-.++ ..+..+.+.. ..|+|+.-
T Consensus 370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~---eii~~MegDr--~VVNCLEp 444 (559)
T KOG1334|consen 370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG---EIIRFMEGDR--HVVNCLEP 444 (559)
T ss_pred CCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh---HHHHHhhccc--ceEeccCC
Confidence 1122 12344444 4688999999999999999998877 3445566655 46999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCce
Q psy307 564 SPDMSYLISGDADGKCYIWDWKTTKL 589 (1019)
Q Consensus 564 spdg~~Lasgs~DG~I~IWDl~t~~~ 589 (1019)
+|--..||+.+-|..|+||-..+.+.
T Consensus 445 HP~~PvLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 445 HPHLPVLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred CCCCchhhccCCccceeeecCCcccc
Confidence 99999999999999999998755443
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.5e-09 Score=115.17 Aligned_cols=250 Identities=15% Similarity=0.206 Sum_probs=165.0
Q ss_pred CCeEEEEEcCCCCc-EEEEeeCCCeEEEEecCCCcEEEE------EecccCccEeEEEEcCCCCceeEEEeecCCCCcEE
Q psy307 336 KGISAIRWFPKSAH-LLLSCSMDCRVKLWEVYKERRCVR------TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 336 ~~V~~i~fspd~g~-lLaSgs~Dg~I~IWdl~~~~~~~~------~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L 408 (1019)
..|++++|.-++.. .|..++.|-.+....+. ...+.. +.....++|..+.... ..|
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~-E~~~~s~~~~~~~~~l~~~~I~gl~~~d----------------g~L 118 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIE-EFEISSSLDDAKTVSLGTKSIKGLKLAD----------------GTL 118 (412)
T ss_pred hhhhhheeecCCceeEeeccccCccccccccc-CCccccccccccccccccccccchhhcC----------------CEE
Confidence 36777777655433 33334456566555552 222221 2333445555554332 478
Q ss_pred EEEeCCCcEEEEEccCCC---eEEEEEccccccEeEEEEecCCCE-EEEEEcC--CeEEEEECCCCceEEEEecCCceEE
Q psy307 409 LSCSMDCRVKLWEVYKEH---RCVRTYYGHRQAVRDICFNNTGTN-FISAGYD--RYLKLWDTESGECISRFTSRKVAYC 482 (1019)
Q Consensus 409 ~sgs~Dg~I~IWDl~~~~---~~~~~l~~H~~~V~sl~fspdg~~-l~S~s~D--g~I~lWDl~t~~~i~~~~~~~~v~~ 482 (1019)
++|-.+|.+.+|...... .....+..+ ..+..+.-++.... +++||.. ..++|||++..+.+ +.....
T Consensus 119 itc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi--w~aKNv--- 192 (412)
T KOG3881|consen 119 ITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI--WSAKNV--- 192 (412)
T ss_pred EEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceee--eeccCC---
Confidence 999999999999985322 222223222 34445555555554 5568888 78999999987443 333221
Q ss_pred EEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC--CCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEE
Q psy307 483 VKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN--NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560 (1019)
Q Consensus 483 v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd--g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~ 560 (1019)
|+. .+ + -.-.-.++.+.|-+. ...|++++.-+++++||.+.+.+. +..+.-.. .++++
T Consensus 193 ----pnD-~L--~---------LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP--V~~fd~~E--~~is~ 252 (412)
T KOG3881|consen 193 ----PND-RL--G---------LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP--VAQFDFLE--NPISS 252 (412)
T ss_pred ----CCc-cc--c---------ceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc--eeEecccc--Cccee
Confidence 110 00 0 001123455666666 788999999999999999865433 44444333 56999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeee-eeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccce
Q psy307 561 LDFSPDMSYLISGDADGKCYIWDWKTTKLFKK-WKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANI 630 (1019)
Q Consensus 561 v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~-l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i 630 (1019)
+...|+|++|++|..-|.+..+|+++++++.. +++-.|.|.++..||.. .++++||-|..+++. |...
T Consensus 253 ~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~-~~las~GLDRyvRIh-D~kt 321 (412)
T KOG3881|consen 253 TGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIH-DIKT 321 (412)
T ss_pred eeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCC-ceEEeeccceeEEEe-eccc
Confidence 99999999999999999999999999999887 88999999999999988 599999999888654 4433
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-08 Score=118.58 Aligned_cols=210 Identities=10% Similarity=0.018 Sum_probs=130.0
Q ss_pred CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe---CCCcEEEEEccCCCeEEEEEcc
Q psy307 358 CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS---MDCRVKLWEVYKEHRCVRTYYG 434 (1019)
Q Consensus 358 g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs---~Dg~I~IWDl~~~~~~~~~l~~ 434 (1019)
..|.+||..... .+.+..+...+.+.+|+|||. .|+..+ .+..|.+|++.. ++.. .+..
T Consensus 179 ~~l~~~d~dg~~--~~~lt~~~~~~~~p~wSPDG~--------------~la~~s~~~g~~~i~i~dl~~-G~~~-~l~~ 240 (429)
T PRK03629 179 YELRVSDYDGYN--QFVVHRSPQPLMSPAWSPDGS--------------KLAYVTFESGRSALVIQTLAN-GAVR-QVAS 240 (429)
T ss_pred eeEEEEcCCCCC--CEEeecCCCceeeeEEcCCCC--------------EEEEEEecCCCcEEEEEECCC-CCeE-EccC
Confidence 478888874322 233445667899999999995 333322 345789999844 3222 2222
Q ss_pred ccccEeEEEEecCCCEEEEE-EcCC--eEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcc
Q psy307 435 HRQAVRDICFNNTGTNFISA-GYDR--YLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSM 511 (1019)
Q Consensus 435 H~~~V~sl~fspdg~~l~S~-s~Dg--~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i 511 (1019)
..+.+..+.|+|||+.|+.. +.+| .|.+||+.+++....... ...+
T Consensus 241 ~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~-------------------------------~~~~ 289 (429)
T PRK03629 241 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG-------------------------------RSNN 289 (429)
T ss_pred CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC-------------------------------CCCc
Confidence 23334567999999988755 4444 588999988765332211 1224
Q ss_pred cEEEEcCCCCEEEEEecC-C--eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC---CeEEEEeCC
Q psy307 512 PAVTSSPNNKWLACQSMD-N--KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD---GKCYIWDWK 585 (1019)
Q Consensus 512 ~~v~~spdg~~Lasgs~D-g--~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D---G~I~IWDl~ 585 (1019)
....|+|+|+.|+..+.+ + .|.++|+.++.. ..+.... .......|+|||++|+..+.+ ..|++||+.
T Consensus 290 ~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~----~~lt~~~--~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~ 363 (429)
T PRK03629 290 TEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP----QRITWEG--SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA 363 (429)
T ss_pred CceEECCCCCEEEEEeCCCCCceEEEEECCCCCe----EEeecCC--CCccCEEECCCCCEEEEEEccCCCceEEEEECC
Confidence 567889999988877654 4 455556655421 2222221 334568999999998876543 358899998
Q ss_pred CCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 586 TTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 586 t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+++.. .+... .......|+|+| ..|+.++.++....+
T Consensus 364 ~g~~~-~Lt~~-~~~~~p~~SpDG-~~i~~~s~~~~~~~l 400 (429)
T PRK03629 364 TGGVQ-VLTDT-FLDETPSIAPNG-TMVIYSSSQGMGSVL 400 (429)
T ss_pred CCCeE-EeCCC-CCCCCceECCCC-CEEEEEEcCCCceEE
Confidence 88643 33321 223467899999 577777777654333
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.3e-09 Score=122.63 Aligned_cols=204 Identities=15% Similarity=0.134 Sum_probs=128.2
Q ss_pred CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC---CCcEEEEEccCCCeEEEEEcc
Q psy307 358 CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM---DCRVKLWEVYKEHRCVRTYYG 434 (1019)
Q Consensus 358 g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~---Dg~I~IWDl~~~~~~~~~l~~ 434 (1019)
..|.+||.. + ...+.+..|...+.+.+|+|||. .|+..+. +..|.+||+..+ .. ..+..
T Consensus 184 ~~l~i~D~~-g-~~~~~lt~~~~~v~~p~wSpDg~--------------~la~~s~~~~~~~l~~~dl~~g-~~-~~l~~ 245 (433)
T PRK04922 184 YALQVADSD-G-YNPQTILRSAEPILSPAWSPDGK--------------KLAYVSFERGRSAIYVQDLATG-QR-ELVAS 245 (433)
T ss_pred EEEEEECCC-C-CCceEeecCCCccccccCCCCCC--------------EEEEEecCCCCcEEEEEECCCC-CE-EEecc
Confidence 468888873 2 23445556777889999999984 4554443 346999999443 32 22333
Q ss_pred ccccEeEEEEecCCCEEE-EEEcCC--eEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcc
Q psy307 435 HRQAVRDICFNNTGTNFI-SAGYDR--YLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSM 511 (1019)
Q Consensus 435 H~~~V~sl~fspdg~~l~-S~s~Dg--~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i 511 (1019)
+.+...++.|+|||+.++ +.+.+| .|.+||+.+++... +..+ ....
T Consensus 246 ~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~------------------------------~~~~ 294 (433)
T PRK04922 246 FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNH------------------------------FGID 294 (433)
T ss_pred CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-CccC------------------------------CCCc
Confidence 444556789999999875 555555 59999998876432 2111 1112
Q ss_pred cEEEEcCCCCEEEEEec-CC--eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC---eEEEEeCC
Q psy307 512 PAVTSSPNNKWLACQSM-DN--KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG---KCYIWDWK 585 (1019)
Q Consensus 512 ~~v~~spdg~~Lasgs~-Dg--~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG---~I~IWDl~ 585 (1019)
...+|+|+|+.|+..+. +| .|.++++.++.. .. .++.+ .....++|||||++|+..+.++ .|.+||+.
T Consensus 295 ~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~-lt~~g----~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~ 368 (433)
T PRK04922 295 TEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ER-LTFQG----NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS 368 (433)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EE-eecCC----CCccCEEECCCCCEEEEEECCCCceeEEEEECC
Confidence 34678999998887764 44 466667655421 11 11222 2344689999999998765443 69999998
Q ss_pred CCceeeeeeccCCCEEEEEEcCCCCcEEEEEeC
Q psy307 586 TTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGW 618 (1019)
Q Consensus 586 t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~ 618 (1019)
+++.. .+. +........|+|+|..++++...
T Consensus 369 ~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~ 399 (433)
T PRK04922 369 TGSVR-TLT-PGSLDESPSFAPNGSMVLYATRE 399 (433)
T ss_pred CCCeE-ECC-CCCCCCCceECCCCCEEEEEEec
Confidence 88754 333 22244577999999544444433
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.9e-09 Score=112.38 Aligned_cols=195 Identities=13% Similarity=0.236 Sum_probs=134.4
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEcc-ccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceE-EEEecCCceEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYG-HRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECI-SRFTSRKVAYCV 483 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~-H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i-~~~~~~~~v~~v 483 (1019)
..++++..|-.|++||-.. .+...++. ....|+|++|-|.+..-++.+.-+-|.+|.....-.. +....
T Consensus 111 ~~fava~nddvVriy~kss--t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~------- 181 (445)
T KOG2139|consen 111 IAFAVATNDDVVRIYDKSS--TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRM------- 181 (445)
T ss_pred hhhhhhccCcEEEEeccCC--CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccccccccccc-------
Confidence 4578899999999999743 44444433 4578999999998766555555567999986432111 10000
Q ss_pred EEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec-CCeEEEEEccCcccccceeEEeccccccceEEEE
Q psy307 484 KFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM-DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562 (1019)
Q Consensus 484 ~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~-Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~ 562 (1019)
...........+....|+++.|.+||..+++++- |..|.|||..++...... . .+ .+.++-+.
T Consensus 182 -----------~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~-~g---lgg~slLk 245 (445)
T KOG2139|consen 182 -----------MSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-P-KG---LGGFSLLK 245 (445)
T ss_pred -----------ccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-c-cC---CCceeeEE
Confidence 0011122333444577899999999999998875 568999999987543222 1 12 25578899
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 563 fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
|||||.+|.+++-|+..++|..........+....+.|...+|+|+|..++++++..-.++..
T Consensus 246 wSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl 308 (445)
T KOG2139|consen 246 WSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSL 308 (445)
T ss_pred EcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEE
Confidence 999999999999999999996544333333334456899999999998888888887776554
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-10 Score=124.98 Aligned_cols=208 Identities=13% Similarity=0.074 Sum_probs=158.6
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeee--------ccCCCceeeeCCCCCccc
Q psy307 441 DICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL--------DIPVDMKYIADPTMHSMP 512 (1019)
Q Consensus 441 sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~--------~~~~~~~~i~~~~~~~i~ 512 (1019)
.+.++.+|++++.|+.-|.|-.+|..+++....+.....+..+.|-.+...+++ .-..+...-.-.....+.
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~v~ 213 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIRVA 213 (545)
T ss_pred eeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCchh
Confidence 458889999999999999999999999999999988888888888665543333 111122222222345677
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee
Q psy307 513 AVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKK 592 (1019)
Q Consensus 513 ~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~ 592 (1019)
.+.|-|..-+|++++..|.+.--|+..+..+..+.+ .. +.+..++-.|-...+-+|...|+|.+|...+.+++..
T Consensus 214 rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t---~~--G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK 288 (545)
T KOG1272|consen 214 RLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT---GA--GRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK 288 (545)
T ss_pred hhcccchhheeeecccCCceEEEeechhhhhHHHHc---cC--CccchhhcCCccceEEEcCCCceEEecCCCCcchHHH
Confidence 888999999999999999999999998854433322 22 5567788889888999999999999999999999999
Q ss_pred eeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccc
Q psy307 593 WKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLS 654 (1019)
Q Consensus 593 l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LS 654 (1019)
+-.|.++|.++++.++| .+++|+|.|..+++|.-++..+............+.+.+...|+
T Consensus 289 iLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA 349 (545)
T KOG1272|consen 289 ILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLA 349 (545)
T ss_pred HHhcCCCcceEEECCCC-cEEeecccccceeEeeeccccccceeecCCCcccccccccccee
Confidence 99999999999999998 79999999999988765655544433333344444555554444
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.9e-08 Score=109.15 Aligned_cols=278 Identities=14% Similarity=0.083 Sum_probs=163.0
Q ss_pred cccCCCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC
Q psy307 289 HIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE 368 (1019)
Q Consensus 289 ~~~~~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~ 368 (1019)
|....+.++||++...+.|+.|.+++... .+.+.+++.-. ...++++++|+..+++++..++.+.|+|. .+
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-------~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~-~t 109 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLAT-------GKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDA-ET 109 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTS-------SSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEET-TT
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCc-------ccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEecc-cc
Confidence 44445788999988888999999998763 34566776544 46789999974444445568999999998 45
Q ss_pred cEEEEEeccc-------CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeE
Q psy307 369 RRCVRTYYGH-------RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRD 441 (1019)
Q Consensus 369 ~~~~~~~~gh-------~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~s 441 (1019)
.+.++.+... ...+..|..++.. +.++++--..+.|.+-|....................
T Consensus 110 le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~-------------~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D 176 (369)
T PF02239_consen 110 LEPVKTIPTGGMPVDGPESRVAAIVASPGR-------------PEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHD 176 (369)
T ss_dssp --EEEEEE--EE-TTTS---EEEEEE-SSS-------------SEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEE
T ss_pred ccceeecccccccccccCCCceeEEecCCC-------------CEEEEEEccCCeEEEEEeccccccceeeecccccccc
Confidence 5666665432 2345556555555 2455555556888888875554444444444455667
Q ss_pred EEEecCCCEEEEEE-cCCeEEEEECCCCceEEEEecCCceEE----EEEecCCCee------------eecc------C-
Q psy307 442 ICFNNTGTNFISAG-YDRYLKLWDTESGECISRFTSRKVAYC----VKFHPDEDKQ------------HLDI------P- 497 (1019)
Q Consensus 442 l~fspdg~~l~S~s-~Dg~I~lWDl~t~~~i~~~~~~~~v~~----v~~~p~~~~~------------~~~~------~- 497 (1019)
..|+|++++++.+. .+..|-++|+.+++.+..+.....+.. --.||..... .++. .
T Consensus 177 ~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~ 256 (369)
T PF02239_consen 177 GGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDD 256 (369)
T ss_dssp EEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STT
T ss_pred cccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchh
Confidence 89999999977654 567899999999988877654332210 0122222110 0000 0
Q ss_pred --C-CceeeeCCCCCcccEEEEcCCCCEEEEE----ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEE
Q psy307 498 --V-DMKYIADPTMHSMPAVTSSPNNKWLACQ----SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYL 570 (1019)
Q Consensus 498 --~-~~~~i~~~~~~~i~~v~~spdg~~Lasg----s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~L 570 (1019)
. ..+.+. .. +....+..||+++++.+. ...++|.++|..+... ..++.... ...+..+.|++||+++
T Consensus 257 ~~wkvv~~I~-~~-G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~---~~~i~~~~-~~~~~h~ef~~dG~~v 330 (369)
T PF02239_consen 257 YAWKVVKTIP-TQ-GGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKV---VKTITPGP-GKRVVHMEFNPDGKEV 330 (369)
T ss_dssp TBTSEEEEEE--S-SSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEE---EE-HHHHH-T--EEEEEE-TTSSEE
T ss_pred hcCeEEEEEE-CC-CCcceeecCCCCccEEeeccCCCCCceEEEEECcCcce---eEEEeccC-CCcEeccEECCCCCEE
Confidence 0 001111 11 222567889999999998 4457999999987632 23332211 1237889999999976
Q ss_pred EEEeC--CCeEEEEeCCCCceeeeee
Q psy307 571 ISGDA--DGKCYIWDWKTTKLFKKWK 594 (1019)
Q Consensus 571 asgs~--DG~I~IWDl~t~~~l~~l~ 594 (1019)
..+.. +|.|.|||.+|.+.+..++
T Consensus 331 ~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 331 WVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEEEecCCCEEEEEECCCcEEEEEEE
Confidence 55443 4479999999999999887
|
... |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-08 Score=118.35 Aligned_cols=221 Identities=13% Similarity=0.159 Sum_probs=137.8
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCC---CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCC
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMD---CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKS 404 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~D---g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~ 404 (1019)
.+.+..+...+...+|+|+ ++.|+.++.+ ..|.+||+..+.. ..+..+...+.+++|+|||.
T Consensus 182 ~~~l~~~~~~~~~p~~Spd-g~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~------------ 246 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPD-GQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS------------ 246 (417)
T ss_pred CEEeecCCCceecccCCCC-CCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC------------
Confidence 3455667778999999997 5555555433 5799999954422 22333445566677888774
Q ss_pred CcEEEEEeCCC--cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcC-C--eEEEEECCCCceEEEEecCCc
Q psy307 405 AHLLLSCSMDC--RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD-R--YLKLWDTESGECISRFTSRKV 479 (1019)
Q Consensus 405 ~~~L~sgs~Dg--~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~D-g--~I~lWDl~t~~~i~~~~~~~~ 479 (1019)
.++++.+.++ .|.+||+... ....+..+........|+|+|++|+.++.. + .|.+||+.+++... +..
T Consensus 247 -~l~~~~~~~~~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~--- 319 (417)
T TIGR02800 247 -KLAVSLSKDGNPDIYVMDLDGK--QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTF--- 319 (417)
T ss_pred -EEEEEECCCCCccEEEEECCCC--CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eec---
Confidence 3445555554 5888887433 233444555555677999999998876653 3 57777877654321 110
Q ss_pred eEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC---eEEEEEccCcccccceeEEecccccc
Q psy307 480 AYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN---KILIFSALNRFKLNRKKTFEGHMVAG 556 (1019)
Q Consensus 480 v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg---~I~iwd~~~~~~~~~~~~l~gh~~~~ 556 (1019)
.........|+|+|++|+.++.++ .|.+||+.++.. ..+... .
T Consensus 320 ---------------------------~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~----~~l~~~---~ 365 (417)
T TIGR02800 320 ---------------------------RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE----RVLTDT---G 365 (417)
T ss_pred ---------------------------CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe----EEccCC---C
Confidence 112234567899999999888776 888999876421 222221 1
Q ss_pred ceEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeeeeeccCCCEEEEEE
Q psy307 557 YACSLDFSPDMSYLISGDADG---KCYIWDWKTTKLFKKWKAHDGVCISTLW 605 (1019)
Q Consensus 557 ~V~~v~fspdg~~Lasgs~DG---~I~IWDl~t~~~l~~l~~h~~~V~sl~~ 605 (1019)
......|+|||++|+.++.++ .+++.+. +++....+..+.+.+..+.|
T Consensus 366 ~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 366 LDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred CCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCcCCCCC
Confidence 233568999999888877654 4556554 34555555544555555555
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-09 Score=134.54 Aligned_cols=226 Identities=18% Similarity=0.293 Sum_probs=162.9
Q ss_pred eccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEE
Q psy307 331 WEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLS 410 (1019)
Q Consensus 331 l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~s 410 (1019)
++.|-..|.++.=+| ...+-+||+.||.|++|....+...+.--.+-...|+.+.|+.+| +.+..
T Consensus 2204 ~k~~v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG--------------nk~~i 2268 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG--------------NKFGI 2268 (2439)
T ss_pred eecccCceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC--------------Cceee
Confidence 344556777777777 467889999999999999854444333222333778888888888 67888
Q ss_pred EeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEE---cCCeEEEEECCCCceEEEEecCCceEEEEEec
Q psy307 411 CSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG---YDRYLKLWDTESGECISRFTSRKVAYCVKFHP 487 (1019)
Q Consensus 411 gs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s---~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p 487 (1019)
+..||.+.+|.+. .++....+.|.....+..|-. ..+++++ .++.+.+||.....
T Consensus 2269 ~d~dg~l~l~q~~--pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~------------------ 2326 (2439)
T KOG1064|consen 2269 VDGDGDLSLWQAS--PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPP------------------ 2326 (2439)
T ss_pred eccCCceeecccC--CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCc------------------
Confidence 9999999999984 777888889999999888865 5566664 46889999964221
Q ss_pred CCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCC
Q psy307 488 DEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM 567 (1019)
Q Consensus 488 ~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg 567 (1019)
...++...|.+.++++++.|..+.|++|+.+|.|++||++..... ..+.. +. ..
T Consensus 2327 -----------~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~---h~~~~-----------~~-~~ 2380 (2439)
T KOG1064|consen 2327 -----------MNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLR---HTFQA-----------LD-TR 2380 (2439)
T ss_pred -----------ccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHH---HHhhh-----------hh-hh
Confidence 112233456678889999999999999999999999999875322 21111 33 45
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeeeeec---cCC--CE--EEEEEcCCCCcEEEEEeCCCc
Q psy307 568 SYLISGDADGKCYIWDWKTTKLFKKWKA---HDG--VC--ISTLWHPHEPSKVVTAGWDAA 621 (1019)
Q Consensus 568 ~~Lasgs~DG~I~IWDl~t~~~l~~l~~---h~~--~V--~sl~~sp~~~~~l~s~s~Dg~ 621 (1019)
.++++|+..|.|+||++....+++++.. |.+ .. ..+-.-+. ..|.+||.||+
T Consensus 2381 ~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~--nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2381 EYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQC--NRIFSCGADGT 2439 (2439)
T ss_pred heeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeeccC--ceEEEecCCCC
Confidence 6899999999999999998888877753 222 11 12222222 47888888874
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.1e-08 Score=108.59 Aligned_cols=266 Identities=18% Similarity=0.157 Sum_probs=159.2
Q ss_pred CCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEee---cCCCCcEEEEE
Q psy307 335 TKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRW---FPKSAHLLLSC 411 (1019)
Q Consensus 335 ~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~---~p~~~~~L~sg 411 (1019)
...++..++++ +|.+++ .+.+..|+|++...... +.+... ..+.++.|+|.|.++.+--.| -|...
T Consensus 34 ~~~~~v~~~S~-~G~lfA-~~~~~~v~i~~~~~~~~-~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~------ 102 (566)
T KOG2315|consen 34 SRPCNVFAYSN-NGRLFA-YSDNQVVKVFEIATLKV-VLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNA------ 102 (566)
T ss_pred CCcceeEEEcC-CCcEEE-EEcCCeEEEEEccCCcE-EEEecc--ceeeeeeecccccccccccccccccCCCC------
Confidence 34467778888 466555 45678899999855443 322222 278999999999654332211 11111
Q ss_pred eCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEec----
Q psy307 412 SMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHP---- 487 (1019)
Q Consensus 412 s~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p---- 487 (1019)
....+.+|++.+ +.....+......-+++.|+.|..+.+ --..+.+.+|++...+.+..--+...+....++|
T Consensus 103 -~~pn~~v~~vet-~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~ 179 (566)
T KOG2315|consen 103 -SNPNVLVYNVET-GVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEP 179 (566)
T ss_pred -CCCceeeeeecc-ceehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCccceeeeeeccceeeEEecCCCCC
Confidence 134578999855 444333333222225777877765422 1123456666665432221111112222222222
Q ss_pred ------------------------------------------------CCCeeee----------------------ccC
Q psy307 488 ------------------------------------------------DEDKQHL----------------------DIP 497 (1019)
Q Consensus 488 ------------------------------------------------~~~~~~~----------------------~~~ 497 (1019)
-+..+.+ .+.
T Consensus 180 ~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~ 259 (566)
T KOG2315|consen 180 PFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ 259 (566)
T ss_pred ceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec
Confidence 2221111 122
Q ss_pred CCceeeeCCCCCcccEEEEcCCCCEEEE--EecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC
Q psy307 498 VDMKYIADPTMHSMPAVTSSPNNKWLAC--QSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA 575 (1019)
Q Consensus 498 ~~~~~i~~~~~~~i~~v~~spdg~~Las--gs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~ 575 (1019)
.....+.-...++|.+++|+|+|+-+++ |-+-..+.|||++.. .+..+ .. ++-+++-|+|.|++|+.++-
T Consensus 260 g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----~v~df--~e--gpRN~~~fnp~g~ii~lAGF 331 (566)
T KOG2315|consen 260 GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----PVFDF--PE--GPRNTAFFNPHGNIILLAGF 331 (566)
T ss_pred CceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----EeEeC--CC--CCccceEECCCCCEEEEeec
Confidence 2222333445788999999999977655 557789999999764 22222 22 66778999999999888764
Q ss_pred ---CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeC------CCcEEEE
Q psy307 576 ---DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGW------DAATAKV 625 (1019)
Q Consensus 576 ---DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~------Dg~I~iw 625 (1019)
-|.|-|||+.+.+++..+.+.. .+-+.|+|+| .+++|+.. |+.+++|
T Consensus 332 GNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdG-e~flTATTaPRlrvdNg~Kiw 387 (566)
T KOG2315|consen 332 GNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDG-EYFLTATTAPRLRVDNGIKIW 387 (566)
T ss_pred CCCCCceEEEeccchhhccccccCC--ceEEEEcCCC-cEEEEEeccccEEecCCeEEE
Confidence 4789999999999999988755 3668899999 57777663 5667666
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.7e-09 Score=111.08 Aligned_cols=227 Identities=18% Similarity=0.330 Sum_probs=156.8
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCC------------CCeEEEEEcCCC-CcEEEEeeCCCe
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHT------------KGISAIRWFPKS-AHLLLSCSMDCR 359 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~------------~~V~~i~fspd~-g~lLaSgs~Dg~ 359 (1019)
.++..|.++++|..+|.|.++........ -.....++..|. ..|..++|.+++ ...++..+.|.+
T Consensus 32 ef~~~Ge~LatGdkgGRVv~f~r~~~~~~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdkt 109 (433)
T KOG1354|consen 32 EFDHYGERLATGDKGGRVVLFEREKLYKG--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKT 109 (433)
T ss_pred EeecccceEeecCCCCeEEEeeccccccc--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcc
Confidence 57889999999999999999876543321 112334455554 578999998864 346777889999
Q ss_pred EEEEecCCCcE----------------------------------EEEEe-cccCccEeEEEEcCCCCceeEE-------
Q psy307 360 VKLWEVYKERR----------------------------------CVRTY-YGHRQAVRDICFNNTGTNFISA------- 397 (1019)
Q Consensus 360 I~IWdl~~~~~----------------------------------~~~~~-~gh~~~V~~i~fspdg~~~vs~------- 397 (1019)
|++|.+..... |.+.+ .+|.--|++|.++.|+..++++
T Consensus 110 iKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINL 189 (433)
T KOG1354|consen 110 IKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINL 189 (433)
T ss_pred eeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeee
Confidence 99998843211 11222 3577889999999999888765
Q ss_pred -----------------------------EeecCCCCcEEEEEeCCCcEEEEEccCCCeEEE---------------EEc
Q psy307 398 -----------------------------IRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVR---------------TYY 433 (1019)
Q Consensus 398 -----------------------------i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~---------------~l~ 433 (1019)
..|+|...++++-.+..|+|++-|++...-|-. .+.
T Consensus 190 Wnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffs 269 (433)
T KOG1354|consen 190 WNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFS 269 (433)
T ss_pred ccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHH
Confidence 337888899999999999999999964332211 122
Q ss_pred cccccEeEEEEecCCCEEEEEEcCCeEEEEECC-CCceEEEEecCCceE---EEEEecCCCeeeeccCCCceeeeCCCCC
Q psy307 434 GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTE-SGECISRFTSRKVAY---CVKFHPDEDKQHLDIPVDMKYIADPTMH 509 (1019)
Q Consensus 434 ~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~-t~~~i~~~~~~~~v~---~v~~~p~~~~~~~~~~~~~~~i~~~~~~ 509 (1019)
+--..|..+.|+++|+++++-.+ -+|++||+. ..+++.+++.+.... |-.+-.| .-.
T Consensus 270 eiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD------------------~If 330 (433)
T KOG1354|consen 270 EIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEND------------------AIF 330 (433)
T ss_pred HHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhcc------------------chh
Confidence 33467899999999999987654 689999994 445555555332110 0000000 001
Q ss_pred cccEEEEcCCCCEEEEEecCCeEEEEEccCc
Q psy307 510 SMPAVTSSPNNKWLACQSMDNKILIFSALNR 540 (1019)
Q Consensus 510 ~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~ 540 (1019)
.--.++|+.++.++++|+..+.+++|++..+
T Consensus 331 dKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 331 DKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred heeEEEEcCCcceEecccccceEEEecCCCC
Confidence 1124788989999999999999999997654
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.9e-08 Score=118.73 Aligned_cols=223 Identities=13% Similarity=0.137 Sum_probs=135.1
Q ss_pred eeccCCCCeEEEEEcCCCCcEEEEeeCCC--eEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDC--RVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 330 ~l~gH~~~V~~i~fspd~g~lLaSgs~Dg--~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
.+..+...+.+.+|+||+..++++...++ .|.+||+..+.. ..+....+......|+|||. .+
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~-------------~L 276 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGK-------------KL 276 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCC-------------EE
Confidence 45566778999999998555555544444 578888854322 11222222334567777774 45
Q ss_pred EEEEeCCCc--EEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc-CC--eEEEEECCCCceEEEEecCCceEE
Q psy307 408 LLSCSMDCR--VKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY-DR--YLKLWDTESGECISRFTSRKVAYC 482 (1019)
Q Consensus 408 L~sgs~Dg~--I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~-Dg--~I~lWDl~t~~~i~~~~~~~~v~~ 482 (1019)
+++.+.+|. |.+||+. ++ ....+..+.......+|+|||+.|+..+. ++ .|.++|+.+++... +...
T Consensus 277 a~~~~~~g~~~Iy~~dl~-tg-~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~----- 348 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIA-TK-ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE----- 348 (448)
T ss_pred EEEEeCCCCeEEEEEECC-CC-CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC-----
Confidence 556677775 6666763 33 23445556566777899999998876654 33 46666777665322 1100
Q ss_pred EEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC-C--eEEEEEccCcccccceeEEeccccccceE
Q psy307 483 VKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD-N--KILIFSALNRFKLNRKKTFEGHMVAGYAC 559 (1019)
Q Consensus 483 v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D-g--~I~iwd~~~~~~~~~~~~l~gh~~~~~V~ 559 (1019)
.......+|+|+|++|+..+.+ + .|.++|+.++.. ..+.... ...
T Consensus 349 -------------------------g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~----~~lt~~~---~d~ 396 (448)
T PRK04792 349 -------------------------GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM----QVLTSTR---LDE 396 (448)
T ss_pred -------------------------CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe----EEccCCC---CCC
Confidence 0111235789999988776553 3 455667766521 1222111 122
Q ss_pred EEEEcCCCCEEEEEeCC-C--eEEEEeCCCCceeeeeeccCCCEEEEEEcCC
Q psy307 560 SLDFSPDMSYLISGDAD-G--KCYIWDWKTTKLFKKWKAHDGVCISTLWHPH 608 (1019)
Q Consensus 560 ~v~fspdg~~Lasgs~D-G--~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~ 608 (1019)
...|+|||+.|+..+.+ | .+++++. +|+....+..+.+.+...+|+|-
T Consensus 397 ~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 397 SPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence 45799999988765543 3 4778886 56667777777777888889873
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.8e-09 Score=110.58 Aligned_cols=252 Identities=19% Similarity=0.292 Sum_probs=183.4
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEE-ecccCccEeEEEEcCCCCceeEEEeecCCC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRT-YYGHRQAVRDICFNNTGTNFISAIRWFPKS 404 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~-~~gh~~~V~~i~fspdg~~~vs~i~~~p~~ 404 (1019)
...+.++||.+.|++...-|. ..-+++.+.|.++|||--.+.++--.. +..-..+++++.+.++.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~-e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~------------- 80 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPK-EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES------------- 80 (404)
T ss_pred hhhhhhcCchhhhhhheeccC-CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc-------------
Confidence 456789999999999998885 667999999999999965444332222 22235678888887776
Q ss_pred CcEEEEEeCCCcEEEEEccC---CCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceE
Q psy307 405 AHLLLSCSMDCRVKLWEVYK---EHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY 481 (1019)
Q Consensus 405 ~~~L~sgs~Dg~I~IWDl~~---~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~ 481 (1019)
..|+.|-..|++.-+.+.. .....+.+..|...|..+.|+-...++++.+.|..+..--.+.+..+..+.......
T Consensus 81 -~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t 159 (404)
T KOG1409|consen 81 -RRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPAS 159 (404)
T ss_pred -eEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCC
Confidence 6888999999998887743 234566778899999999999989999999999888766666655443322111100
Q ss_pred EEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEE
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSL 561 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v 561 (1019)
...+ +-.+...|...|.|.+-.+... ....+.++.+|. +.+.++
T Consensus 160 ~~~~---------------------------------d~~~~fvGd~~gqvt~lr~~~~-~~~~i~~~~~h~--~~~~~l 203 (404)
T KOG1409|consen 160 ALQF---------------------------------DALYAFVGDHSGQITMLKLEQN-GCQLITTFNGHT--GEVTCL 203 (404)
T ss_pred CCce---------------------------------eeEEEEecccccceEEEEEeec-CCceEEEEcCcc--cceEEE
Confidence 0000 0014455666677766655432 235677888998 779999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCce-eeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccce
Q psy307 562 DFSPDMSYLISGDADGKCYIWDWKTTKL-FKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANI 630 (1019)
Q Consensus 562 ~fspdg~~Lasgs~DG~I~IWDl~t~~~-l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i 630 (1019)
+|.|....|.+|..|..+.+||+.-.+- ...+.+|...|..+...+.- +.+++++.||.|..| +.+.
T Consensus 204 ~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w-~mn~ 271 (404)
T KOG1409|consen 204 KWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVW-NMNV 271 (404)
T ss_pred EEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh-eeeeeccCCCeEEEE-eccc
Confidence 9999999999999999999999976543 44677899999888877665 689999999999655 5444
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.8e-08 Score=109.90 Aligned_cols=297 Identities=15% Similarity=0.155 Sum_probs=181.5
Q ss_pred CCCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEe-----eC-----CCeEE
Q psy307 292 DPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSC-----SM-----DCRVK 361 (1019)
Q Consensus 292 ~~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSg-----s~-----Dg~I~ 361 (1019)
..++..|++++-.. +..+++.+..... .+.+...- .++++.|+|. +.+|.+- .. .-.++
T Consensus 40 ~~~S~~G~lfA~~~-~~~v~i~~~~~~~-------~~lt~~~~--~~~~L~fSP~-g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 40 FAYSNNGRLFAYSD-NQVVKVFEIATLK-------VVLCVELK--KTYDLLFSPK-GNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred EEEcCCCcEEEEEc-CCeEEEEEccCCc-------EEEEeccc--eeeeeeeccc-ccccccccccccccCCCCCCCcee
Confidence 34567888877664 4556666544221 22232222 7899999996 6676652 12 24577
Q ss_pred EEecCCCcEEEEEecccCccEeEEEEcCCCCce---------------------------eEEEeecCC-CCcEEEE---
Q psy307 362 LWEVYKERRCVRTYYGHRQAVRDICFNNTGTNF---------------------------ISAIRWFPK-SAHLLLS--- 410 (1019)
Q Consensus 362 IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~---------------------------vs~i~~~p~-~~~~L~s--- 410 (1019)
+|++.+ ......+......-+++.|+.|.... ++...++|. .+..+++
T Consensus 109 v~~vet-~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvP 187 (566)
T KOG2315|consen 109 VYNVET-GVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVP 187 (566)
T ss_pred eeeecc-ceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEcc
Confidence 999855 33333333222222455666554321 222334555 3334443
Q ss_pred --EeCCCcEEEEEccCCC--eEEEEEccccccEeEEEEecCCCEEE---EEEcC---------CeEEEEECCCCceEEEE
Q psy307 411 --CSMDCRVKLWEVYKEH--RCVRTYYGHRQAVRDICFNNTGTNFI---SAGYD---------RYLKLWDTESGECISRF 474 (1019)
Q Consensus 411 --gs~Dg~I~IWDl~~~~--~~~~~l~~H~~~V~sl~fspdg~~l~---S~s~D---------g~I~lWDl~t~~~i~~~ 474 (1019)
++.-+.|+||.....+ ..+..-.-....=..+.|++-|+-|+ +..-| .++.+.+++...+.-.+
T Consensus 188 e~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L 267 (566)
T KOG2315|consen 188 EKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL 267 (566)
T ss_pred CCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec
Confidence 4555678888874111 11111111122233457887776422 22223 36899999977777778
Q ss_pred ecCCceEEEEEecCCCeeee----------ccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC---CeEEEEEccCcc
Q psy307 475 TSRKVAYCVKFHPDEDKQHL----------DIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD---NKILIFSALNRF 541 (1019)
Q Consensus 475 ~~~~~v~~v~~~p~~~~~~~----------~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D---g~I~iwd~~~~~ 541 (1019)
...++|+++.|+|++....+ -.......+.+...++-.++-|+|.|++|+.++-+ |.|-|||+.+..
T Consensus 268 ~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 268 LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK 347 (566)
T ss_pred CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh
Confidence 88899999999999976555 12223445556667777899999999999988765 699999998853
Q ss_pred cccceeEEeccccccceEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCC
Q psy307 542 KLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA------DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609 (1019)
Q Consensus 542 ~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~------DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~ 609 (1019)
. +..+... ..+-+.|+|||+++++++. |..++||+. +|.++..-.-.+ ....+.|-|..
T Consensus 348 ~---i~~~~a~----~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~s-EL~qv~W~P~~ 412 (566)
T KOG2315|consen 348 L---IAKFKAA----NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKS-ELLQVEWRPFN 412 (566)
T ss_pred h---ccccccC----CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhH-hHhheeeeecC
Confidence 3 3344332 2456899999999998875 677999996 566655433222 57788888754
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.3e-07 Score=102.36 Aligned_cols=261 Identities=13% Similarity=0.130 Sum_probs=160.1
Q ss_pred EEEeeCC----CeEEEEecCCCcEEEEEe--cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC----CCcEEEE
Q psy307 351 LLSCSMD----CRVKLWEVYKERRCVRTY--YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM----DCRVKLW 420 (1019)
Q Consensus 351 LaSgs~D----g~I~IWdl~~~~~~~~~~--~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~----Dg~I~IW 420 (1019)
++.|+.. +.|.+|+++.....+... ..-......++++|++ ++|++... +|.|..|
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~--------------~~LY~~~e~~~~~g~v~~~ 67 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDG--------------RRLYVVNEGSGDSGGVSSY 67 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTS--------------SEEEEEETTSSTTTEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCC--------------CEEEEEEccccCCCCEEEE
Confidence 3445544 677777773222222111 1123445667777777 56666655 5799999
Q ss_pred EccCC-CeE--EEEEccccccEeEEEEecCCCEEEEEEc-CCeEEEEECCC-CceEEE---Ee-----------cCCceE
Q psy307 421 EVYKE-HRC--VRTYYGHRQAVRDICFNNTGTNFISAGY-DRYLKLWDTES-GECISR---FT-----------SRKVAY 481 (1019)
Q Consensus 421 Dl~~~-~~~--~~~l~~H~~~V~sl~fspdg~~l~S~s~-Dg~I~lWDl~t-~~~i~~---~~-----------~~~~v~ 481 (1019)
++... +.+ +............++++|++++++++.+ +|+|.++++.. |..... +. ....++
T Consensus 68 ~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H 147 (345)
T PF10282_consen 68 RIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPH 147 (345)
T ss_dssp EEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEE
T ss_pred EECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccce
Confidence 98665 333 3333334455667899999999998886 89999999987 433222 21 234578
Q ss_pred EEEEecCCCeeee-ccCCCc----------------eeeeCCCCCcccEEEEcCCCCEEEEE-ecCCeEEEEEcc-Cccc
Q psy307 482 CVKFHPDEDKQHL-DIPVDM----------------KYIADPTMHSMPAVTSSPNNKWLACQ-SMDNKILIFSAL-NRFK 542 (1019)
Q Consensus 482 ~v~~~p~~~~~~~-~~~~~~----------------~~i~~~~~~~i~~v~~spdg~~Lasg-s~Dg~I~iwd~~-~~~~ 542 (1019)
++.++|++....+ +...+. ..+..+.......++|+|+++++.+. -.+++|.+|++. ....
T Consensus 148 ~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~ 227 (345)
T PF10282_consen 148 QVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS 227 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred eEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc
Confidence 9999999886655 111111 12233444556689999999988655 467899999988 2223
Q ss_pred ccceeEEecc----ccccceEEEEEcCCCCEEEEEe-CCCeEEEEeCC--CCce--eeeeeccCCCEEEEEEcCCCCcEE
Q psy307 543 LNRKKTFEGH----MVAGYACSLDFSPDMSYLISGD-ADGKCYIWDWK--TTKL--FKKWKAHDGVCISTLWHPHEPSKV 613 (1019)
Q Consensus 543 ~~~~~~l~gh----~~~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl~--t~~~--l~~l~~h~~~V~sl~~sp~~~~~l 613 (1019)
+..+...... ........+.++|||++|+++. ..+.|.+|++. ++++ +..+.........++++|+|..++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~ 307 (345)
T PF10282_consen 228 LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLY 307 (345)
T ss_dssp EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEE
T ss_pred eeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEE
Confidence 3333333221 1112578899999999987765 56789999993 3433 444444444579999999996555
Q ss_pred EEEeCCCcEEEE
Q psy307 614 VTAGWDAATAKV 625 (1019)
Q Consensus 614 ~s~s~Dg~I~iw 625 (1019)
++...++.|.++
T Consensus 308 Va~~~s~~v~vf 319 (345)
T PF10282_consen 308 VANQDSNTVSVF 319 (345)
T ss_dssp EEETTTTEEEEE
T ss_pred EEecCCCeEEEE
Confidence 555566777655
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-08 Score=115.09 Aligned_cols=264 Identities=13% Similarity=0.152 Sum_probs=178.6
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc--------------EEEEEecccCccEeEEEEcCCCCceeEEEeec
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER--------------RCVRTYYGHRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~--------------~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
....|+.|+.. ..+++.||.||.++|-.+.+.. ..-+++.||+..|.-+.|+...
T Consensus 15 vkL~c~~WNke-~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~---------- 83 (1189)
T KOG2041|consen 15 VKLHCAEWNKE-SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN---------- 83 (1189)
T ss_pred ceEEEEEEccc-CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc----------
Confidence 35789999985 6799999999999999874321 1225678999999999998876
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCCCeEEEEE-ccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCce
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY-YGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVA 480 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l-~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v 480 (1019)
+.|-++..+|.|.+|-+..+..+-... ....+.|.+++|+.+|..+.....||.|.+=.++..+.-..--.....
T Consensus 84 ----QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l 159 (1189)
T KOG2041|consen 84 ----QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLL 159 (1189)
T ss_pred ----ccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhec
Confidence 578888999999999996655443333 234567899999999999999999999887766544322111111223
Q ss_pred EEEEEecCCCeeeecc----------------------CCCceeeeCCCCCcccEEEE--------cCCCCEEEEEecCC
Q psy307 481 YCVKFHPDEDKQHLDI----------------------PVDMKYIADPTMHSMPAVTS--------SPNNKWLACQSMDN 530 (1019)
Q Consensus 481 ~~v~~~p~~~~~~~~~----------------------~~~~~~i~~~~~~~i~~v~~--------spdg~~Lasgs~Dg 530 (1019)
..+.|++|.....+.. .+...-+.....+.+..+.| -|+...|+++..+|
T Consensus 160 ~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nG 239 (1189)
T KOG2041|consen 160 AHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANG 239 (1189)
T ss_pred cceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCc
Confidence 3567777654333311 11111222223334555555 35888999999999
Q ss_pred eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC---------eEEEEeCCCCceeeeeeccCCCEE
Q psy307 531 KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG---------KCYIWDWKTTKLFKKWKAHDGVCI 601 (1019)
Q Consensus 531 ~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG---------~I~IWDl~t~~~l~~l~~h~~~V~ 601 (1019)
.+.|-.-.+.. .+...-.| -.+..+.|+++|..|+.++.+. .|+++. .-|+.+.+++.....|+
T Consensus 240 r~QiMR~eND~--~Pvv~dtg----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It 312 (1189)
T KOG2041|consen 240 RMQIMRSENDP--EPVVVDTG----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCIT 312 (1189)
T ss_pred eehhhhhcCCC--CCeEEecc----cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceee
Confidence 99887554432 12222122 4578899999999999987642 566665 45788889998888999
Q ss_pred EEEEcCCCCcEEEEEeCCCcEE
Q psy307 602 STLWHPHEPSKVVTAGWDAATA 623 (1019)
Q Consensus 602 sl~~sp~~~~~l~s~s~Dg~I~ 623 (1019)
+++|-..| +-++-.-|+.|.
T Consensus 313 ~lsWEg~g--LriA~Avdsfiy 332 (1189)
T KOG2041|consen 313 GLSWEGTG--LRIAIAVDSFIY 332 (1189)
T ss_pred eeEEcCCc--eEEEEEecceEE
Confidence 99998654 333344455553
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.3e-08 Score=115.64 Aligned_cols=224 Identities=11% Similarity=0.098 Sum_probs=137.5
Q ss_pred eeeccCCCCeEEEEEcCCCCcEEEEeeCC--CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCc
Q psy307 329 HTWEGHTKGISAIRWFPKSAHLLLSCSMD--CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAH 406 (1019)
Q Consensus 329 ~~l~gH~~~V~~i~fspd~g~lLaSgs~D--g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~ 406 (1019)
+.+..|...+...+|+|++..+++++..+ ..|.+||+..+. . ..+....+.+....|+|||. .
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~-~-~~l~~~~g~~~~~~~SpDG~-------------~ 256 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR-R-EQITNFEGLNGAPAWSPDGS-------------K 256 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC-E-EEccCCCCCcCCeEECCCCC-------------E
Confidence 45556777899999999754444444333 468889985432 2 22233333445677888774 3
Q ss_pred EEEEEeCCC--cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc-CC--eEEEEECCCCceEEEEecCCceE
Q psy307 407 LLLSCSMDC--RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY-DR--YLKLWDTESGECISRFTSRKVAY 481 (1019)
Q Consensus 407 ~L~sgs~Dg--~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~-Dg--~I~lWDl~t~~~i~~~~~~~~v~ 481 (1019)
++++.+.+| .|.+||+.. +. ...+..+........|+|||+.|+..+. ++ .|.++|+.+++........
T Consensus 257 la~~~~~~g~~~Iy~~d~~~-~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~---- 330 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLAS-RQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG---- 330 (430)
T ss_pred EEEEEccCCCceEEEEECCC-CC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC----
Confidence 444555555 577778843 32 3345556666677899999998876664 33 5777787776542211000
Q ss_pred EEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC---eEEEEEccCcccccceeEEeccccccce
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN---KILIFSALNRFKLNRKKTFEGHMVAGYA 558 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg---~I~iwd~~~~~~~~~~~~l~gh~~~~~V 558 (1019)
.......|+|+|++|+..+.++ .|.+||+.++.. ..+... ...
T Consensus 331 ---------------------------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~----~~lt~~---~~~ 376 (430)
T PRK00178 331 ---------------------------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV----RILTDT---SLD 376 (430)
T ss_pred ---------------------------CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE----EEccCC---CCC
Confidence 1112357899999988776533 588889876532 222211 112
Q ss_pred EEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeeeeccCCCEEEEEEcCC
Q psy307 559 CSLDFSPDMSYLISGDAD---GKCYIWDWKTTKLFKKWKAHDGVCISTLWHPH 608 (1019)
Q Consensus 559 ~~v~fspdg~~Lasgs~D---G~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~ 608 (1019)
....|+|||++++..+.+ +.|+++++. +.....+..+.+.+...+|+|-
T Consensus 377 ~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 377 ESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 246899999998876644 357777874 4444556556667778888874
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.8e-08 Score=113.20 Aligned_cols=227 Identities=12% Similarity=0.060 Sum_probs=131.9
Q ss_pred eccCCCCeEEEEEcCCCCc--EEEEeeCCC--eEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCc
Q psy307 331 WEGHTKGISAIRWFPKSAH--LLLSCSMDC--RVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAH 406 (1019)
Q Consensus 331 l~gH~~~V~~i~fspd~g~--lLaSgs~Dg--~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~ 406 (1019)
++.+...+..-+|+||+.. ++++...+| .|.+.++..+. .+.+....+......|+|||. .
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~--~~~lt~~~g~~~~p~wSPDG~-------------~ 244 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA--GKKILALQGNQLMPTFSPRKK-------------L 244 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC--ceEeecCCCCccceEECCCCC-------------E
Confidence 4445556777899998655 334555554 46666774332 122222334455678888885 3
Q ss_pred EEEEEeCCC----cEEEEEccCC--CeEEEEEccccccEeEEEEecCCCEEEEEE-cCCeEEEEE--CCC-CceEEEEec
Q psy307 407 LLLSCSMDC----RVKLWEVYKE--HRCVRTYYGHRQAVRDICFNNTGTNFISAG-YDRYLKLWD--TES-GECISRFTS 476 (1019)
Q Consensus 407 ~L~sgs~Dg----~I~IWDl~~~--~~~~~~l~~H~~~V~sl~fspdg~~l~S~s-~Dg~I~lWD--l~t-~~~i~~~~~ 476 (1019)
++++...+| .+.+|++... +.......++.+.....+|+|||+.|+..+ .+|...||. +.. +.....+.
T Consensus 245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt- 323 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT- 323 (428)
T ss_pred EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec-
Confidence 334433333 3444676432 333334433334456779999999888766 456555553 321 11111111
Q ss_pred CCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC---CeEEEEEccCcccccceeEEeccc
Q psy307 477 RKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD---NKILIFSALNRFKLNRKKTFEGHM 553 (1019)
Q Consensus 477 ~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D---g~I~iwd~~~~~~~~~~~~l~gh~ 553 (1019)
.....+....|+|||+.|+..+.+ ..|.+||+.++.. ..+....
T Consensus 324 -----------------------------~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~~ 370 (428)
T PRK01029 324 -----------------------------KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----YQLTTSP 370 (428)
T ss_pred -----------------------------cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----EEccCCC
Confidence 111234567889999988876543 4799999987632 2222211
Q ss_pred cccceEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCC
Q psy307 554 VAGYACSLDFSPDMSYLISGDA---DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609 (1019)
Q Consensus 554 ~~~~V~~v~fspdg~~Lasgs~---DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~ 609 (1019)
..+..+.|+|||++|+..+. .+.|++||+.+++..... ...+.+...+|+|..
T Consensus 371 --~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 371 --ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAFP 426 (428)
T ss_pred --CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecCCC
Confidence 33567899999998875433 357899999887654433 345567788898753
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-06 Score=100.01 Aligned_cols=253 Identities=13% Similarity=0.149 Sum_probs=157.0
Q ss_pred CCeEEEEEcCCCCcEEEEeeC----CCeEEEEecCCC-cE--EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEE
Q psy307 336 KGISAIRWFPKSAHLLLSCSM----DCRVKLWEVYKE-RR--CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~----Dg~I~IWdl~~~-~~--~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L 408 (1019)
...+.++++|+ +++|+++.. +|.|..|++... +. .+............++++|++ .+|
T Consensus 37 ~~Ps~l~~~~~-~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g--------------~~l 101 (345)
T PF10282_consen 37 ENPSWLAVSPD-GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDG--------------RFL 101 (345)
T ss_dssp SSECCEEE-TT-SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTS--------------SEE
T ss_pred CCCceEEEEeC-CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCC--------------CEE
Confidence 35667889996 677777765 579999998654 33 233333233445678888887 455
Q ss_pred EEE-eCCCcEEEEEccCCCeEEEEE--cc-----------ccccEeEEEEecCCCEEEEEEc-CCeEEEEECCCCc--eE
Q psy307 409 LSC-SMDCRVKLWEVYKEHRCVRTY--YG-----------HRQAVRDICFNNTGTNFISAGY-DRYLKLWDTESGE--CI 471 (1019)
Q Consensus 409 ~sg-s~Dg~I~IWDl~~~~~~~~~l--~~-----------H~~~V~sl~fspdg~~l~S~s~-Dg~I~lWDl~t~~--~i 471 (1019)
+++ ..+|.|.++++...+.+.... .. -.....++.|+|+|+++++... ...|.+|++.... ..
T Consensus 102 ~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~ 181 (345)
T PF10282_consen 102 YVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLT 181 (345)
T ss_dssp EEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEE
T ss_pred EEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEE
Confidence 555 468999999997766544331 11 1245678999999998877654 3579999987654 32
Q ss_pred E----EEecCCceEEEEEecCCCeeeeccCC--------------Cce---eeeCC---C--CCcccEEEEcCCCCEEEE
Q psy307 472 S----RFTSRKVAYCVKFHPDEDKQHLDIPV--------------DMK---YIADP---T--MHSMPAVTSSPNNKWLAC 525 (1019)
Q Consensus 472 ~----~~~~~~~v~~v~~~p~~~~~~~~~~~--------------~~~---~i~~~---~--~~~i~~v~~spdg~~Las 525 (1019)
. .+.....+..+.|+|++....+.... ... .+... . ......+.++|+|++|.+
T Consensus 182 ~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyv 261 (345)
T PF10282_consen 182 PVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYV 261 (345)
T ss_dssp EEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEE
T ss_pred EeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEE
Confidence 2 33456789999999998876551110 000 11111 1 113557999999999877
Q ss_pred Ee-cCCeEEEEEccC-cccccceeEEeccccccceEEEEEcCCCCEEEEEe-CCCeEEEEeC--CCCceeeeee-ccCCC
Q psy307 526 QS-MDNKILIFSALN-RFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD-ADGKCYIWDW--KTTKLFKKWK-AHDGV 599 (1019)
Q Consensus 526 gs-~Dg~I~iwd~~~-~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl--~t~~~l~~l~-~h~~~ 599 (1019)
+. ..+.|.+|++.. ...+..+..+... ......++++|+|++|+++. .++.|.+|++ .+|.+...-. ..-..
T Consensus 262 snr~~~sI~vf~~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~ 339 (345)
T PF10282_consen 262 SNRGSNSISVFDLDPATGTLTLVQTVPTG--GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPS 339 (345)
T ss_dssp EECTTTEEEEEEECTTTTTEEEEEEEEES--SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred EeccCCEEEEEEEecCCCceEEEEEEeCC--CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCC
Confidence 65 567999999943 2233333333321 24478999999999998887 4568999876 5676544332 22334
Q ss_pred EEEEEE
Q psy307 600 CISTLW 605 (1019)
Q Consensus 600 V~sl~~ 605 (1019)
..|+.|
T Consensus 340 p~ci~f 345 (345)
T PF10282_consen 340 PVCIVF 345 (345)
T ss_dssp EEEEEE
T ss_pred CEEEeC
Confidence 566665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.5e-08 Score=108.83 Aligned_cols=242 Identities=17% Similarity=0.186 Sum_probs=162.9
Q ss_pred CCCCcEEEEeeCCCeEEEEecCCCcEEEEEec---ccCccEeEEEEcC--CCCceeEEEee--------cCCCCcEEEEE
Q psy307 345 PKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY---GHRQAVRDICFNN--TGTNFISAIRW--------FPKSAHLLLSC 411 (1019)
Q Consensus 345 pd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~---gh~~~V~~i~fsp--dg~~~vs~i~~--------~p~~~~~L~sg 411 (1019)
|....++|....||.++||+...+ +....+. .-++..++..|.- +. ++..| ...+...++-|
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~-~~~~e~~p~~~~s~t~~~~~w~L~~~~----s~~k~~~~~~~~~~s~~t~~lvlg 76 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKN-QLQQEFAPIASLSGTCTYTKWGLSADY----SPMKWLSLEKAKKASLDTSMLVLG 76 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCc-eeeeeeccchhccCcceeEEEEEEecc----chHHHHhHHHHhhccCCceEEEee
Confidence 335788999999999999998544 3333222 1233444444430 00 01111 12344678899
Q ss_pred eCCCcEEEEEccCCCeEEEEEc--cccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCC
Q psy307 412 SMDCRVKLWEVYKEHRCVRTYY--GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDE 489 (1019)
Q Consensus 412 s~Dg~I~IWDl~~~~~~~~~l~--~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~ 489 (1019)
...|.|.+|++ ..++....+. +|.+.|.++.++.+-..|.|++.|+.+..|+...++.+..+....
T Consensus 77 t~~g~v~~ys~-~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~----------- 144 (541)
T KOG4547|consen 77 TPQGSVLLYSV-AGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQK----------- 144 (541)
T ss_pred cCCccEEEEEe-cCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCC-----------
Confidence 99999999999 5666666554 699999999999999999999999999999998887766655432
Q ss_pred CeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCC---
Q psy307 490 DKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPD--- 566 (1019)
Q Consensus 490 ~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspd--- 566 (1019)
..+.+++++|||+.+++++ ++|.+||+.++ ..+..|.||. ++|.+++|.-+
T Consensus 145 -------------------~~~~sl~is~D~~~l~~as--~~ik~~~~~~k---evv~~ftgh~--s~v~t~~f~~~~~g 198 (541)
T KOG4547|consen 145 -------------------PLVSSLCISPDGKILLTAS--RQIKVLDIETK---EVVITFTGHG--SPVRTLSFTTLIDG 198 (541)
T ss_pred -------------------CccceEEEcCCCCEEEecc--ceEEEEEccCc---eEEEEecCCC--cceEEEEEEEeccc
Confidence 3456788899999999886 79999999988 5668999998 88999999876
Q ss_pred --CCEEEEEe-CCCeEEEEeCCC----CceeeeeeccCCCEEEEEEcCCC---CcEEEEEeCCCcEEEEeccce
Q psy307 567 --MSYLISGD-ADGKCYIWDWKT----TKLFKKWKAHDGVCISTLWHPHE---PSKVVTAGWDAATAKVQDANI 630 (1019)
Q Consensus 567 --g~~Lasgs-~DG~I~IWDl~t----~~~l~~l~~h~~~V~sl~~sp~~---~~~l~s~s~Dg~I~iwwd~~i 630 (1019)
|.++.++. .+..+.+|-+.. ....+.+...+-+|..=.+.-.. +-.+++.-.+|. +.|...+.
T Consensus 199 ~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dipv~~ds~~~ed~~~~l~lAst~~~g~-v~~~~~nl 271 (541)
T KOG4547|consen 199 IIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIPVTSDSGLLEDGTIPLVLASTLIPGI-VHLKLSNL 271 (541)
T ss_pred cccceeeeccccccceeEEEEEcccccchhheeeccCCCCeEeccccccccccceEEeeeccCce-eeeccccH
Confidence 77776654 445677786543 23344555444444443333322 123344444444 35544443
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-07 Score=111.58 Aligned_cols=214 Identities=12% Similarity=0.080 Sum_probs=119.4
Q ss_pred CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC--cEEEEEccCCCeEEEEEccc
Q psy307 358 CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC--RVKLWEVYKEHRCVRTYYGH 435 (1019)
Q Consensus 358 g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg--~I~IWDl~~~~~~~~~l~~H 435 (1019)
+.|.+.|... ...+.+......+.+-.|+|||..+ .++++...+| .|.+.++.. +. ...+...
T Consensus 165 ~~l~~~d~dG--~~~~~lt~~~~~~~sP~wSPDG~~~-----------~~~y~S~~~g~~~I~~~~l~~-g~-~~~lt~~ 229 (428)
T PRK01029 165 GELWSVDYDG--QNLRPLTQEHSLSITPTWMHIGSGF-----------PYLYVSYKLGVPKIFLGSLEN-PA-GKKILAL 229 (428)
T ss_pred ceEEEEcCCC--CCceEcccCCCCcccceEccCCCce-----------EEEEEEccCCCceEEEEECCC-CC-ceEeecC
Confidence 3566666532 2233344455566777888888421 1233444444 466667633 22 2222223
Q ss_pred cccEeEEEEecCCCEEEEEEc-----CCeEEEEECCCCc--eEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCC
Q psy307 436 RQAVRDICFNNTGTNFISAGY-----DRYLKLWDTESGE--CISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTM 508 (1019)
Q Consensus 436 ~~~V~sl~fspdg~~l~S~s~-----Dg~I~lWDl~t~~--~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~ 508 (1019)
.+......|+|||+.|+..+. |..+.+|++..+. ....+. ....
T Consensus 230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt-----------------------------~~~~ 280 (428)
T PRK01029 230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL-----------------------------NEAF 280 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee-----------------------------cCCC
Confidence 444556799999999886653 2234446655431 001111 0011
Q ss_pred CcccEEEEcCCCCEEEEEe-cCCeEEEE--EccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC---CeEEEE
Q psy307 509 HSMPAVTSSPNNKWLACQS-MDNKILIF--SALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD---GKCYIW 582 (1019)
Q Consensus 509 ~~i~~v~~spdg~~Lasgs-~Dg~I~iw--d~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D---G~I~IW 582 (1019)
......+|+|||+.|+..+ .+|...+| ++.... .....+..+. ..+....|||||++|+..+.+ ..|++|
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~~lt~~~--~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~ 356 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPRLLTKKY--RNSSCPAWSPDGKKIAFCSVIKGVRQICVY 356 (428)
T ss_pred CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceEEeccCC--CCccceeECCCCCEEEEEEcCCCCcEEEEE
Confidence 1234568999999888766 45654455 443211 1122233322 345678999999988876543 369999
Q ss_pred eCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCC
Q psy307 583 DWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 583 Dl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
|+.+++... +......+....|+|+|..+++++..++
T Consensus 357 dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g 393 (428)
T PRK01029 357 DLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSN 393 (428)
T ss_pred ECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCC
Confidence 999887643 3333445678999999865555555443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-07 Score=111.18 Aligned_cols=206 Identities=14% Similarity=0.116 Sum_probs=128.3
Q ss_pred CCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC---CcEEEEEccCCCeEEEEEc
Q psy307 357 DCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD---CRVKLWEVYKEHRCVRTYY 433 (1019)
Q Consensus 357 Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D---g~I~IWDl~~~~~~~~~l~ 433 (1019)
...|.++|... ...+.+..+...+.+..|+|+|. .|+.++.+ ..|++||+..+.. ..+.
T Consensus 169 ~~~l~~~d~~g--~~~~~l~~~~~~~~~p~~Spdg~--------------~la~~~~~~~~~~i~v~d~~~g~~--~~~~ 230 (417)
T TIGR02800 169 RYELQVADYDG--ANPQTITRSREPILSPAWSPDGQ--------------KLAYVSFESGKPEIYVQDLATGQR--EKVA 230 (417)
T ss_pred cceEEEEcCCC--CCCEEeecCCCceecccCCCCCC--------------EEEEEEcCCCCcEEEEEECCCCCE--EEee
Confidence 34577777632 22344556667788889999984 44444332 5799999854422 2233
Q ss_pred cccccEeEEEEecCCCEEEE-EEcCC--eEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCc
Q psy307 434 GHRQAVRDICFNNTGTNFIS-AGYDR--YLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHS 510 (1019)
Q Consensus 434 ~H~~~V~sl~fspdg~~l~S-~s~Dg--~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~ 510 (1019)
.+.+.+.+++|+|+|+.|+. .+.++ .|.+||+.++......... ..
T Consensus 231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-------------------------------~~ 279 (417)
T TIGR02800 231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP-------------------------------GI 279 (417)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCC-------------------------------CC
Confidence 45566677899999998764 44444 5888898876542211110 11
Q ss_pred ccEEEEcCCCCEEEEEecC-C--eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC---eEEEEeC
Q psy307 511 MPAVTSSPNNKWLACQSMD-N--KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG---KCYIWDW 584 (1019)
Q Consensus 511 i~~v~~spdg~~Lasgs~D-g--~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG---~I~IWDl 584 (1019)
.....|+|+|+.|+..+.. + .|.++++.++. ...+..+. .....+.|+|||++|+.++.++ .|.+||+
T Consensus 280 ~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~--~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~ 353 (417)
T TIGR02800 280 DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRG--GYNASPSWSPDGDLIAFVHREGGGFNIAVMDL 353 (417)
T ss_pred CCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCC--CCccCeEECCCCCEEEEEEccCCceEEEEEeC
Confidence 2245688899888776543 3 67778876542 12232222 4466789999999999888776 8999999
Q ss_pred CCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCC
Q psy307 585 KTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 585 ~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
.++... .+..+ .......|+|++. .|+.++.++
T Consensus 354 ~~~~~~-~l~~~-~~~~~p~~spdg~-~l~~~~~~~ 386 (417)
T TIGR02800 354 DGGGER-VLTDT-GLDESPSFAPNGR-MILYATTRG 386 (417)
T ss_pred CCCCeE-EccCC-CCCCCceECCCCC-EEEEEEeCC
Confidence 886542 33222 2335568999985 455544444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-08 Score=121.24 Aligned_cols=196 Identities=14% Similarity=0.214 Sum_probs=142.3
Q ss_pred EEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccE-eEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEE
Q psy307 341 IRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAV-RDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKL 419 (1019)
Q Consensus 341 i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V-~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~I 419 (1019)
..++-+ ...++.++.++.+.+||... ...+..+.+..... .+.. +.-.....-++++|+.-+.|.+
T Consensus 93 ~~l~~e-~k~i~l~~~~ns~~i~d~~~-~~~~~~i~~~er~~l~~~~-----------~~g~s~~~~~i~~gsv~~~iiv 159 (967)
T KOG0974|consen 93 AKLFEE-NKKIALVTSRNSLLIRDSKN-SSVLSKIQSDERCTLYSSL-----------IIGDSAEELYIASGSVFGEIIV 159 (967)
T ss_pred cchhhh-cceEEEEEcCceEEEEeccc-CceehhcCCCceEEEEeEE-----------EEeccCcEEEEEeccccccEEE
Confidence 444443 56788889999999999843 33333333221111 1111 1111222358999999999999
Q ss_pred EEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCC
Q psy307 420 WEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVD 499 (1019)
Q Consensus 420 WDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~ 499 (1019)
|+......+. .+.+|.+.|.++.|+.||++++++|.|+++++|++++.+... +..|
T Consensus 160 W~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---------~~~f-------------- 215 (967)
T KOG0974|consen 160 WKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---------CTGF-------------- 215 (967)
T ss_pred EeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---------cccc--------------
Confidence 9996444444 789999999999999999999999999999999999876543 1111
Q ss_pred ceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeE
Q psy307 500 MKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKC 579 (1019)
Q Consensus 500 ~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I 579 (1019)
.|...+..++++|+ .+++++.|.+.++|+.... ....+.+|.. ..+..++..++...+++++.||.+
T Consensus 216 ------gHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~----~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~l 282 (967)
T KOG0974|consen 216 ------GHSARVWACCFLPN--RIITVGEDCTCRVWGVNGT----QLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTL 282 (967)
T ss_pred ------cccceeEEEEeccc--eeEEeccceEEEEEecccc----eehhhhhhhh-cceeEEEEcCCceEEEeeccCcch
Confidence 24455667788888 8999999999999976543 2336777753 458899999999999999999999
Q ss_pred EEEeCCC
Q psy307 580 YIWDWKT 586 (1019)
Q Consensus 580 ~IWDl~t 586 (1019)
++||+..
T Consensus 283 k~~~l~~ 289 (967)
T KOG0974|consen 283 KLWDLNG 289 (967)
T ss_pred hhhhhhc
Confidence 9999753
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.9e-08 Score=110.72 Aligned_cols=188 Identities=10% Similarity=0.158 Sum_probs=136.8
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcc---ccccEeEEEEe--------------------cCCCEEEEEEcCC
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG---HRQAVRDICFN--------------------NTGTNFISAGYDR 458 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~---H~~~V~sl~fs--------------------pdg~~l~S~s~Dg 458 (1019)
|....+++....||.+++|+. ..++..+.+.. -.+...+..|. .+-..++-|...|
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t-~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDT-AKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred CchhheEeecCCCCeEEEEEc-cCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 344578999999999999998 44444444322 12333444442 1233567777888
Q ss_pred eEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy307 459 YLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSAL 538 (1019)
Q Consensus 459 ~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~ 538 (1019)
.|.++++..|+....+..+ .|...+.++.++.+-..|.+++.|+.+..|+..
T Consensus 81 ~v~~ys~~~g~it~~~st~----------------------------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~ 132 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKLSTD----------------------------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEK 132 (541)
T ss_pred cEEEEEecCCeEEEEEecC----------------------------CCCCcceeeecccccCceEecCCceeEEEEecc
Confidence 8999988888877666542 344566777777788889999999999999998
Q ss_pred CcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCC-----CCcEE
Q psy307 539 NRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPH-----EPSKV 613 (1019)
Q Consensus 539 ~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~-----~~~~l 613 (1019)
.. ..+....+.. ..+.+++++|||..+++++ +.|.+||+++++.+.+|.+|.++|.++.|... |...|
T Consensus 133 ~~---~~~~~~~~~~--~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vL 205 (541)
T KOG4547|consen 133 EK---VIIRIWKEQK--PLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVL 205 (541)
T ss_pred cc---eeeeeeccCC--CccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceee
Confidence 76 3345555544 4588999999999999886 57999999999999999999999999999876 54444
Q ss_pred EEEeCCCcEEEE
Q psy307 614 VTAGWDAATAKV 625 (1019)
Q Consensus 614 ~s~s~Dg~I~iw 625 (1019)
.+...+.-|.+|
T Consensus 206 ssa~~~r~i~~w 217 (541)
T KOG4547|consen 206 SSAAAERGITVW 217 (541)
T ss_pred eccccccceeEE
Confidence 445555445444
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.6e-06 Score=95.53 Aligned_cols=265 Identities=11% Similarity=-0.019 Sum_probs=159.3
Q ss_pred CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccc--
Q psy307 358 CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGH-- 435 (1019)
Q Consensus 358 g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H-- 435 (1019)
++|.+.|. ...+.+.++..-..+- .+ ++|||+.+..+..|.+. +.-|-.+..|.+||. .+.+.+..+.--
T Consensus 27 ~~v~ViD~-~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R----~~~G~~~d~V~v~D~-~t~~~~~~i~~p~~ 98 (352)
T TIGR02658 27 TQVYTIDG-EAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSR----IARGKRTDYVEVIDP-QTHLPIADIELPEG 98 (352)
T ss_pred ceEEEEEC-CCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccc----cccCCCCCEEEEEEC-ccCcEEeEEccCCC
Confidence 89999998 4566666665433333 24 89998633333222221 122226899999999 555555555421
Q ss_pred -----cccEeEEEEecCCCEEEEEE-c-CCeEEEEECCCCceEEEEecCCceEEEE--------EecCCCeeeeccCCCc
Q psy307 436 -----RQAVRDICFNNTGTNFISAG-Y-DRYLKLWDTESGECISRFTSRKVAYCVK--------FHPDEDKQHLDIPVDM 500 (1019)
Q Consensus 436 -----~~~V~sl~fspdg~~l~S~s-~-Dg~I~lWDl~t~~~i~~~~~~~~v~~v~--------~~p~~~~~~~~~~~~~ 500 (1019)
......++++|||++++... . +..|.+.|+.+++.+..+.......... .++|+....+......
T Consensus 99 p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 99 PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKG 178 (352)
T ss_pred chhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCC
Confidence 12234679999999988766 3 6899999999999999887654333222 3455554443222222
Q ss_pred eeee------CCCCCcc-cEEEEcC-CCCEEEEEecCCeEEEEEccCcccc--cceeEEe------ccccccceEEEEEc
Q psy307 501 KYIA------DPTMHSM-PAVTSSP-NNKWLACQSMDNKILIFSALNRFKL--NRKKTFE------GHMVAGYACSLDFS 564 (1019)
Q Consensus 501 ~~i~------~~~~~~i-~~v~~sp-dg~~Lasgs~Dg~I~iwd~~~~~~~--~~~~~l~------gh~~~~~V~~v~fs 564 (1019)
+... ......+ ..-.+.+ +|+++.+... |+|.+.|+...... ..+..+. +-. .+...-++++
T Consensus 179 ~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wr-P~g~q~ia~~ 256 (352)
T TIGR02658 179 NPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWR-PGGWQQVAYH 256 (352)
T ss_pred ceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccC-CCcceeEEEc
Confidence 1110 0000000 0003345 8888877776 99999996543111 1111111 111 1223349999
Q ss_pred CCCCEEEEEe----------CCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCC-cEEEEEeCCCcEEEEeccceeee
Q psy307 565 PDMSYLISGD----------ADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEP-SKVVTAGWDAATAKVQDANIVKI 633 (1019)
Q Consensus 565 pdg~~Lasgs----------~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~-~~l~s~s~Dg~I~iwwd~~i~ki 633 (1019)
|+|+.+.... ..+.|.++|..+++.+..+..- ..+..++++|++. .++++...++.|.+ -|....+.
T Consensus 257 ~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~VsV-iD~~t~k~ 334 (352)
T TIGR02658 257 RARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAKPLLYALSTGDKTLYI-FDAETGKE 334 (352)
T ss_pred CCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCCeEEEEeCCCCCcEEE-EECcCCeE
Confidence 9999887742 2247999999999999998753 3689999999996 44445556777754 45544444
Q ss_pred e
Q psy307 634 A 634 (1019)
Q Consensus 634 ~ 634 (1019)
.
T Consensus 335 i 335 (352)
T TIGR02658 335 L 335 (352)
T ss_pred E
Confidence 4
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.3e-09 Score=117.30 Aligned_cols=293 Identities=18% Similarity=0.225 Sum_probs=183.3
Q ss_pred EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC------eEEEEEccccccEeEEEEe
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH------RCVRTYYGHRQAVRDICFN 445 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~------~~~~~l~~H~~~V~sl~fs 445 (1019)
+..+.||...|+.+.--.+. +-+++++.|.+|++|.++..+ .|..++..|..+|.++.|-
T Consensus 728 L~nf~GH~~~iRai~AidNE--------------NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL 793 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNE--------------NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFL 793 (1034)
T ss_pred eecccCcHHHhHHHHhcccc--------------cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeee
Confidence 45678898888887654443 578999999999999996443 4778899999999999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC--CCCEE
Q psy307 446 NTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP--NNKWL 523 (1019)
Q Consensus 446 pdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp--dg~~L 523 (1019)
.+.+++++ .||.|.+||.--|+.+...... | ..+.+..+..-+ +...+
T Consensus 794 ~~lr~i~S--cD~giHlWDPFigr~Laq~~da---------p-------------------k~~a~~~ikcl~nv~~~il 843 (1034)
T KOG4190|consen 794 ADLRSIAS--CDGGIHLWDPFIGRLLAQMEDA---------P-------------------KEGAGGNIKCLENVDRHIL 843 (1034)
T ss_pred eccceeee--ccCcceeecccccchhHhhhcC---------c-------------------ccCCCceeEecccCcchhe
Confidence 98887765 5899999998766655433211 1 111111111111 23334
Q ss_pred -EEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEE
Q psy307 524 -ACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCIS 602 (1019)
Q Consensus 524 -asgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~s 602 (1019)
+.++...+|+++|.+...-....+.-......+.+.+++..|.|++++.|-..|+|.+.|.++|+.+..++........
T Consensus 844 iAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllq 923 (1034)
T KOG4190|consen 844 IAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQ 923 (1034)
T ss_pred eeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhh
Confidence 4447889999999987654444444433333366889999999999999999999999999999999988766555555
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEec-cceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCC
Q psy307 603 TLWHPHEPSKVVTAGWDAATAKVQD-ANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNN 681 (1019)
Q Consensus 603 l~~sp~~~~~l~s~s~Dg~I~iwwd-~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~ 681 (1019)
++- |.+ +.++....|.++.+=|. .+-...... ++.+....+-+.+--+- ........+-+|.+...
T Consensus 924 laa-psd-q~L~~saldHslaVnWhaldgimh~q~--kpppepahflqsvgpSL---------V~a~~Gn~lgVYad~a~ 990 (1034)
T KOG4190|consen 924 LAA-PSD-QALAQSALDHSLAVNWHALDGIMHLQD--KPPPEPAHFLQSVGPSL---------VTAQNGNILGVYADSAE 990 (1034)
T ss_pred hcC-chh-HHHHhhcccceeEeeehhcCCeeeecc--CCCCcchhhhhccCcee---------EEeccCcEEEEEecchh
Confidence 543 333 57888888888887343 332222111 11111112222211110 01111223344444332
Q ss_pred ceEEe--ccccccccCCceEEEEecCCccHHHHHhhcCCCchhh
Q psy307 682 KNYIT--EKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNASL 723 (1019)
Q Consensus 682 ~~~it--~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~l 723 (1019)
....+ .+-|-.--.|..+.++.-|-. ...+.|...|.|+|
T Consensus 991 ~ha~stitKiR~d~f~G~lTala~LPLN--~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 991 LHAESTITKIRPDEFPGTLTALAPLPLN--CAFLAGNEHGAIAL 1032 (1034)
T ss_pred hhhhhhhccccccccCCccceeeecccc--chhhccCCCCceee
Confidence 21111 111211236778888888877 66788888888765
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.4e-08 Score=107.36 Aligned_cols=241 Identities=15% Similarity=0.158 Sum_probs=148.6
Q ss_pred ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcccc--ccEeEEEEecCCCEEEEE
Q psy307 377 GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHR--QAVRDICFNNTGTNFISA 454 (1019)
Q Consensus 377 gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~--~~V~sl~fspdg~~l~S~ 454 (1019)
+|....+.|..+|||. .++++|..-..|++||+.. +...+..|. ..|.-.-.+.|-..++--
T Consensus 49 e~p~ast~ik~s~DGq-------------Y~lAtG~YKP~ikvydlan---LSLKFERhlDae~V~feiLsDD~SK~v~L 112 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQ-------------YLLATGTYKPQIKVYDLAN---LSLKFERHLDAEVVDFEILSDDYSKSVFL 112 (703)
T ss_pred CCccccceeEecCCCc-------------EEEEecccCCceEEEEccc---ceeeeeecccccceeEEEeccchhhheEe
Confidence 4666778888888886 5788999999999999832 222333332 234444455555556666
Q ss_pred EcCCeEEEEECCCCceEEEEecCCceEEEEEecCCC-eeeeccCCC--------cee--eeCCCCCcccEEEEcCCCCEE
Q psy307 455 GYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDED-KQHLDIPVD--------MKY--IADPTMHSMPAVTSSPNNKWL 523 (1019)
Q Consensus 455 s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~-~~~~~~~~~--------~~~--i~~~~~~~i~~v~~spdg~~L 523 (1019)
..|++|.+..-- |. -.....+.....++++.-.. ......... ..+ ........+.++.+++...+|
T Consensus 113 ~~DR~IefHak~-G~-hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLl 190 (703)
T KOG2321|consen 113 QNDRTIEFHAKY-GR-HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLL 190 (703)
T ss_pred ecCceeeehhhc-Ce-eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceE
Confidence 667777665321 11 11111111222222221111 111110000 001 111233668889999999999
Q ss_pred EEEecCCeEEEEEccCcccccceeE------EeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee-cc
Q psy307 524 ACQSMDNKILIFSALNRFKLNRKKT------FEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK-AH 596 (1019)
Q Consensus 524 asgs~Dg~I~iwd~~~~~~~~~~~~------l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~-~h 596 (1019)
++|+.+|.|..||.++......+.. ..+......|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-. +.
T Consensus 191 a~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~ 270 (703)
T KOG2321|consen 191 ACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGY 270 (703)
T ss_pred EecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCC
Confidence 9999999999999988744322211 1122223459999999999999999999999999999988875432 33
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeee
Q psy307 597 DGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVE 636 (1019)
Q Consensus 597 ~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e 636 (1019)
.-+|..+.|.+.+. .=...+.|..|..+|+...++....
T Consensus 271 e~pi~~l~~~~~~~-q~~v~S~Dk~~~kiWd~~~Gk~~as 309 (703)
T KOG2321|consen 271 ELPIKKLDWQDTDQ-QNKVVSMDKRILKIWDECTGKPMAS 309 (703)
T ss_pred ccceeeecccccCC-CceEEecchHHhhhcccccCCceee
Confidence 45899999988742 2333446778888888887765533
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-07 Score=105.08 Aligned_cols=266 Identities=16% Similarity=0.205 Sum_probs=153.9
Q ss_pred eEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEE-EeCCCc
Q psy307 338 ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLS-CSMDCR 416 (1019)
Q Consensus 338 V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~s-gs~Dg~ 416 (1019)
-+-+.|||. |.+|+|-...| |.+|--..-.++ +.+ .| ..|.-+.|||...++|+ |+|..- .+-- -+....
T Consensus 213 etyv~wSP~-GTYL~t~Hk~G-I~lWGG~~f~r~-~RF-~H-p~Vq~idfSP~EkYLVT---~s~~p~-~~~~~d~e~~~ 283 (698)
T KOG2314|consen 213 ETYVRWSPK-GTYLVTFHKQG-IALWGGESFDRI-QRF-YH-PGVQFIDFSPNEKYLVT---YSPEPI-IVEEDDNEGQQ 283 (698)
T ss_pred eeeEEecCC-ceEEEEEeccc-eeeecCccHHHH-Hhc-cC-CCceeeecCCccceEEE---ecCCcc-ccCcccCCCce
Confidence 356899996 89999887665 678853222222 222 23 45899999999864433 221100 0000 012257
Q ss_pred EEEEEccCCCeEEEEEcc--ccccEe-EEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEec-CCceEEEEEecCCCee
Q psy307 417 VKLWEVYKEHRCVRTYYG--HRQAVR-DICFNNTGTNFISAGYDRYLKLWDTESGECISRFTS-RKVAYCVKFHPDEDKQ 492 (1019)
Q Consensus 417 I~IWDl~~~~~~~~~l~~--H~~~V~-sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~-~~~v~~v~~~p~~~~~ 492 (1019)
++|||+ .++...+.+.. ....++ -..||.|+++++.-.. .+|.|++..+-.++-.-.. -..+....|+|.+..+
T Consensus 284 l~IWDI-~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~ll 361 (698)
T KOG2314|consen 284 LIIWDI-ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLL 361 (698)
T ss_pred EEEEEc-cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceE
Confidence 999999 55555555554 222233 3489999999887665 5688887654322211110 1223334444443333
Q ss_pred ee-----------------------------------------------ccCCCce----------eee-----------
Q psy307 493 HL-----------------------------------------------DIPVDMK----------YIA----------- 504 (1019)
Q Consensus 493 ~~-----------------------------------------------~~~~~~~----------~i~----------- 504 (1019)
++ ......+ .+.
T Consensus 362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ 441 (698)
T KOG2314|consen 362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV 441 (698)
T ss_pred EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence 22 1000000 000
Q ss_pred CCCCCcccEEEEcCCCCEEEEEecC---CeEEEEEcc-CcccccceeEEeccccccceEEEEEcCCCCEEEEEe---CCC
Q psy307 505 DPTMHSMPAVTSSPNNKWLACQSMD---NKILIFSAL-NRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD---ADG 577 (1019)
Q Consensus 505 ~~~~~~i~~v~~spdg~~Lasgs~D---g~I~iwd~~-~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs---~DG 577 (1019)
-.....+...+|.|.|+.+++-+.+ .++.+|.+. +......++.+.. ...+.+.|+|.|++++.+. ..|
T Consensus 442 velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~vfwsPkG~fvvva~l~s~~g 517 (698)
T KOG2314|consen 442 VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANTVFWSPKGRFVVVAALVSRRG 517 (698)
T ss_pred eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccceEEEcCCCcEEEEEEeccccc
Confidence 0112345678899999988776543 578888887 4444444455544 2367899999999988764 578
Q ss_pred eEEEEeCCCCceeee-eeccCCCEEEEEEcCCCCcEEEEEeCCC
Q psy307 578 KCYIWDWKTTKLFKK-WKAHDGVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 578 ~I~IWDl~t~~~l~~-l~~h~~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
.+.++|..-..+..+ ...|. ..+.+.|.|.| ++++|++.-+
T Consensus 518 ~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtG-RYvvT~ss~w 559 (698)
T KOG2314|consen 518 DLEFYDTDYADLKDTASPEHF-AATEVEWDPTG-RYVVTSSSSW 559 (698)
T ss_pred ceEEEecchhhhhhccCcccc-ccccceECCCC-CEEEEeeehh
Confidence 999999874322222 12243 45789999998 7899988543
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-08 Score=115.56 Aligned_cols=244 Identities=18% Similarity=0.304 Sum_probs=163.2
Q ss_pred eeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCc
Q psy307 301 FLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQ 380 (1019)
Q Consensus 301 ~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~ 380 (1019)
++.........+|....+.. ...-..+.||+.+|+.+-|+|....++++++.|..|..||+......+..+..-..
T Consensus 84 wiVsts~qkaiiwnlA~ss~----~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s 159 (1081)
T KOG0309|consen 84 WIVSTSNQKAIIWNLAKSSS----NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS 159 (1081)
T ss_pred eEEecCcchhhhhhhhcCCc----cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc
Confidence 44444444456676654432 23456788999999999999999999999999999999999777766665555444
Q ss_pred cEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecC-CCEEEEEEcCCe
Q psy307 381 AVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT-GTNFISAGYDRY 459 (1019)
Q Consensus 381 ~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspd-g~~l~S~s~Dg~ 459 (1019)
+-..+.|+- .+++ +++.+....|.+||.+.+..++..+++|...|+.+.|+.- -..+.+++.||+
T Consensus 160 ~asqVkwny-------------k~p~-vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t 225 (1081)
T KOG0309|consen 160 AASQVKWNY-------------KDPN-VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT 225 (1081)
T ss_pred cCceeeecc-------------cCcc-hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc
Confidence 455555554 3334 4445667789999999999999999999999999999763 235889999999
Q ss_pred EEEEECCCC--ceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEc
Q psy307 460 LKLWDTESG--ECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSA 537 (1019)
Q Consensus 460 I~lWDl~t~--~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~ 537 (1019)
|+.||.... +...+.+...++.--.+.|-+.... +-....+..+..--.++....|+.
T Consensus 226 vkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~--------------------~mp~~G~n~v~~~~c~n~d~e~n~ 285 (1081)
T KOG0309|consen 226 VKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC--------------------IMPMVGGNMVPQLRCENSDLEWNV 285 (1081)
T ss_pred eeeecccccccccceeccccCcceeccccccCceeE--------------------eccccCCeeeeeccccchhhhhcc
Confidence 999998654 3334444555555555555443221 111112222222223444445554
Q ss_pred cCcccccceeEEeccccccceEEEEEcC--------CCC--EEEEEeCCCeEEEEeCCC
Q psy307 538 LNRFKLNRKKTFEGHMVAGYACSLDFSP--------DMS--YLISGDADGKCYIWDWKT 586 (1019)
Q Consensus 538 ~~~~~~~~~~~l~gh~~~~~V~~v~fsp--------dg~--~Lasgs~DG~I~IWDl~t 586 (1019)
.++ ...+.+|.||. ..|....|-. |.+ .|++-+.|.++++|-+.+
T Consensus 286 ~~~--~~pVh~F~GH~--D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 286 FDL--NTPVHTFVGHD--DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccC--CcceeeecCcc--hHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 443 25578899997 4454444432 221 589999999999998754
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=3e-08 Score=113.67 Aligned_cols=278 Identities=17% Similarity=0.278 Sum_probs=176.7
Q ss_pred CCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCC-CcEEEEeeCCCeEEEEecCC--CcEE
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKS-AHLLLSCSMDCRVKLWEVYK--ERRC 371 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~-g~lLaSgs~Dg~I~IWdl~~--~~~~ 371 (1019)
.+.||.++.++.-+-..+--.. .+-|...++.++.- .|-.+.|+|.. ..+-++......-.+|++.. ....
T Consensus 33 ~p~grdi~lAsr~gl~i~dld~----p~~ppr~l~h~tpw--~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aI 106 (1081)
T KOG0309|consen 33 NPSGRDIVLASRQGLYIIDLDD----PFTPPRWLHHITPW--QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAI 106 (1081)
T ss_pred ccccchhhhhhhcCeEEEeccC----CCCCceeeeccCcc--hhcceecccCCCCceeEEecCcchhhhhhhhcCCccce
Confidence 5667777777765554443222 23344444444333 35566777642 12333333344556898753 3444
Q ss_pred EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEE
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNF 451 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l 451 (1019)
-..+.||..+|+++.|.+..+ ..+++++.|..+..||++....++.....-......++|+-....+
T Consensus 107 ef~lhghsraitd~n~~~q~p-------------dVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~v 173 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHP-------------DVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNV 173 (1081)
T ss_pred EEEEecCccceeccccCCCCC-------------cceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcch
Confidence 556789999999998877664 7899999999999999998888888887777777888999877777
Q ss_pred EEEEcCCeEEEEECCCCc-eEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC-CCCEEEEEecC
Q psy307 452 ISAGYDRYLKLWDTESGE-CISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP-NNKWLACQSMD 529 (1019)
Q Consensus 452 ~S~s~Dg~I~lWDl~t~~-~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp-dg~~Lasgs~D 529 (1019)
++.+..+.|++||++.|. ++..+..+ ...+..+.|.. ....+.+++.|
T Consensus 174 lasshg~~i~vwd~r~gs~pl~s~K~~------------------------------vs~vn~~~fnr~~~s~~~s~~~d 223 (1081)
T KOG0309|consen 174 LASSHGNDIFVWDLRKGSTPLCSLKGH------------------------------VSSVNSIDFNRFKYSEIMSSSND 223 (1081)
T ss_pred hhhccCCceEEEeccCCCcceEEeccc------------------------------ceeeehHHHhhhhhhhhcccCCC
Confidence 777888899999998774 33333332 11222222221 23457788899
Q ss_pred CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCC--EEEEEeC---------CCeEEEEeCCC-CceeeeeeccC
Q psy307 530 NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMS--YLISGDA---------DGKCYIWDWKT-TKLFKKWKAHD 597 (1019)
Q Consensus 530 g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~--~Lasgs~---------DG~I~IWDl~t-~~~l~~l~~h~ 597 (1019)
|+|+.||........ ..+.. ...++....+.|-|. ++.-.-. +.....|+..+ .++++++.||+
T Consensus 224 ~tvkfw~y~kSt~e~-~~~vt---t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~ 299 (1081)
T KOG0309|consen 224 GTVKFWDYSKSTTES-KRTVT---TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD 299 (1081)
T ss_pred Cceeeeccccccccc-ceecc---ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcc
Confidence 999999987542211 11111 113355555555333 2221111 22233455444 36799999999
Q ss_pred CCEEEEEEcCCC---------CcEEEEEeCCCcEEEE
Q psy307 598 GVCISTLWHPHE---------PSKVVTAGWDAATAKV 625 (1019)
Q Consensus 598 ~~V~sl~~sp~~---------~~~l~s~s~Dg~I~iw 625 (1019)
..|....|-..+ ...|+|.+.|.++++|
T Consensus 300 D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 300 DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred hHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 999888886533 2579999999999887
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.7e-07 Score=104.17 Aligned_cols=207 Identities=12% Similarity=0.050 Sum_probs=124.1
Q ss_pred eEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC-C--CcEEEEEccCCCeEEEEEccc
Q psy307 359 RVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM-D--CRVKLWEVYKEHRCVRTYYGH 435 (1019)
Q Consensus 359 ~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~-D--g~I~IWDl~~~~~~~~~l~~H 435 (1019)
.|.++|.. +. ..+.+..+...+....|+|||. .|+..+. + ..|.+||+..+. . ..+...
T Consensus 180 ~l~~~d~~-g~-~~~~l~~~~~~~~~p~wSpDG~--------------~la~~s~~~~~~~l~~~~l~~g~-~-~~l~~~ 241 (430)
T PRK00178 180 TLQRSDYD-GA-RAVTLLQSREPILSPRWSPDGK--------------RIAYVSFEQKRPRIFVQNLDTGR-R-EQITNF 241 (430)
T ss_pred EEEEECCC-CC-CceEEecCCCceeeeeECCCCC--------------EEEEEEcCCCCCEEEEEECCCCC-E-EEccCC
Confidence 46667763 22 2344556677888999999984 4443332 2 468889984432 2 223333
Q ss_pred cccEeEEEEecCCCEEE-EEEcCC--eEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCccc
Q psy307 436 RQAVRDICFNNTGTNFI-SAGYDR--YLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMP 512 (1019)
Q Consensus 436 ~~~V~sl~fspdg~~l~-S~s~Dg--~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~ 512 (1019)
.+.+....|+|||+.|+ +.+.+| .|.+||+.++.... +... .....
T Consensus 242 ~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~------------------------------~~~~~ 290 (430)
T PRK00178 242 EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNH------------------------------PAIDT 290 (430)
T ss_pred CCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccC------------------------------CCCcC
Confidence 34455689999999876 444555 58888988776432 2111 01123
Q ss_pred EEEEcCCCCEEEEEec-CC--eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC-C--eEEEEeCCC
Q psy307 513 AVTSSPNNKWLACQSM-DN--KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD-G--KCYIWDWKT 586 (1019)
Q Consensus 513 ~v~~spdg~~Lasgs~-Dg--~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D-G--~I~IWDl~t 586 (1019)
...|+|+|+.|+..+. +| .|+++++.++.. ..+ .+.+ .......|+|||++|+..+.+ | .|.+||+.+
T Consensus 291 ~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~-~~l-t~~~----~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t 364 (430)
T PRK00178 291 EPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA-ERV-TFVG----NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR 364 (430)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEe-ecCC----CCccceEECCCCCEEEEEEccCCceEEEEEECCC
Confidence 4578899988876654 33 677778766532 111 1222 223457899999999877643 3 588999988
Q ss_pred CceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcE
Q psy307 587 TKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAAT 622 (1019)
Q Consensus 587 ~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I 622 (1019)
++.. .+.. ........|+|+|..++++...+|.-
T Consensus 365 g~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~ 398 (430)
T PRK00178 365 GSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRG 398 (430)
T ss_pred CCEE-EccC-CCCCCCceECCCCCEEEEEEecCCce
Confidence 7643 2321 22223568999996555555444443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.1e-06 Score=95.81 Aligned_cols=301 Identities=16% Similarity=0.208 Sum_probs=186.1
Q ss_pred CCCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCC-------------
Q psy307 292 DPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDC------------- 358 (1019)
Q Consensus 292 ~~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg------------- 358 (1019)
..+++.|++++.. +-..|.+|....... ++ .+. | ..|.-+.|+|. +.+|.|-+..+
T Consensus 38 ~~~SP~G~~l~~~-~~~~V~~~~g~~~~~------l~-~~~-~-~~V~~~~fSP~-~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 38 VSESPLGTYLFSE-HAAGVECWGGPSKAK------LV-RFR-H-PDVKYLDFSPN-EKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred eeecCcchheehh-hccceEEccccchhh------ee-eee-c-CCceecccCcc-cceeeeeccCCccChhhccCCccc
Confidence 4567888877766 446688886553221 12 222 2 37899999995 88999876443
Q ss_pred --eEEEEecCCCcEEEEEecccCcc--Ee-EEEEcCCCCce-----------------------------eEEEeecCCC
Q psy307 359 --RVKLWEVYKERRCVRTYYGHRQA--VR-DICFNNTGTNF-----------------------------ISAIRWFPKS 404 (1019)
Q Consensus 359 --~I~IWdl~~~~~~~~~~~gh~~~--V~-~i~fspdg~~~-----------------------------vs~i~~~p~~ 404 (1019)
.+.+||+ .++..+..+.+-..+ .. -+.|+-+..+. +...+|+|.+
T Consensus 107 ~n~~~vwd~-~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~ 185 (561)
T COG5354 107 KNNVFVWDI-ASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEG 185 (561)
T ss_pred cCceeEEec-cCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCC
Confidence 4999999 555566655554443 22 34444433222 2224456652
Q ss_pred -CcEEEE-----EeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEE-----------cCCeEEEEECCC
Q psy307 405 -AHLLLS-----CSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG-----------YDRYLKLWDTES 467 (1019)
Q Consensus 405 -~~~L~s-----gs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s-----------~Dg~I~lWDl~t 467 (1019)
...|+. ++.++.+++|.+. .+..+.+-.-....=..+.|++.|++++.-- ....+.|++++.
T Consensus 186 n~~~la~~tPEk~~kpa~~~i~sIp-~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e 264 (561)
T COG5354 186 NHDELAYWTPEKLNKPAMVRILSIP-KNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE 264 (561)
T ss_pred CCceEEEEccccCCCCcEEEEEEcc-CCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence 223332 4567888888885 3333333222223334568888888755321 124688898885
Q ss_pred CceEEEEecCCceEEEEEecCCCeeeecc----------CCCceeeeCCCCCcccEEEEcCCCCEEEEEecC---CeEEE
Q psy307 468 GECISRFTSRKVAYCVKFHPDEDKQHLDI----------PVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD---NKILI 534 (1019)
Q Consensus 468 ~~~i~~~~~~~~v~~v~~~p~~~~~~~~~----------~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D---g~I~i 534 (1019)
..+.......++|...+|.|.+....+-. ..............-..+.|+|.+++++.++-| |.|.+
T Consensus 265 ~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i 344 (561)
T COG5354 265 RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEI 344 (561)
T ss_pred cccceeccccccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEecCCccccceEE
Confidence 55544445578899999999887665522 111112222233444578899999999997766 58999
Q ss_pred EEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCC
Q psy307 535 FSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA------DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPH 608 (1019)
Q Consensus 535 wd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~------DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~ 608 (1019)
||..+.+.. ...+.+.. ..-+.|+|||+++.+... |..|.|||+...... ..+.+.|.|.
T Consensus 345 ~~~~~rf~~--~~~~~~~n----~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~ 410 (561)
T COG5354 345 FDPAGRFKV--AGAFNGLN----TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPS 410 (561)
T ss_pred eccCCceEE--EEEeecCC----ceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCC
Confidence 999876432 33555543 445789999999877643 678999998654432 4567889987
Q ss_pred CCcEEEEEeCCC
Q psy307 609 EPSKVVTAGWDA 620 (1019)
Q Consensus 609 ~~~~l~s~s~Dg 620 (1019)
+ +++.+.+.+.
T Consensus 411 ~-~~~ttsSs~~ 421 (561)
T COG5354 411 G-QYVTTSSSCP 421 (561)
T ss_pred c-ccceeeccCC
Confidence 7 4555555554
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-08 Score=112.94 Aligned_cols=248 Identities=21% Similarity=0.227 Sum_probs=161.6
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC------cEEEEEecccCccEeEEEEcCCCCceeEEEeec
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE------RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~------~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
+..+.||+..|.+++--. +.+-+++++.|.+|++|.+... ..|..++..|+++|.++.|..+..
T Consensus 728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--------- 797 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--------- 797 (1034)
T ss_pred eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc---------
Confidence 567899999999987544 4678999999999999998532 348889999999999999887652
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcc-ccccEeEEEEec--CCCEEEE-EEcCCeEEEEECCCCceEEEEecC
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG-HRQAVRDICFNN--TGTNFIS-AGYDRYLKLWDTESGECISRFTSR 477 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~-H~~~V~sl~fsp--dg~~l~S-~s~Dg~I~lWDl~t~~~i~~~~~~ 477 (1019)
..++.||.|.+||.-.+.-..+.... ..+.+..+..-+ +...++. ++...+|+++|.+.+.....+...
T Consensus 798 -------~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVc 870 (1034)
T KOG4190|consen 798 -------SIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVC 870 (1034)
T ss_pred -------eeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEec
Confidence 34567999999998433322222211 112222222222 3333433 477899999999987755444321
Q ss_pred CceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccc
Q psy307 478 KVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGY 557 (1019)
Q Consensus 478 ~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~ 557 (1019)
. .......+.++++.+.|++++++-.+|.|.+.|.+++..++..+.+...
T Consensus 871 n-------------------------a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecd----- 920 (1034)
T KOG4190|consen 871 N-------------------------APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECD----- 920 (1034)
T ss_pred c-------------------------CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccch-----
Confidence 1 0112244678899999999999999999999999998655544443322
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEE-EeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 558 ACSLDFSPDMSYLISGDADGKCYI-WDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 558 V~~v~fspdg~~Lasgs~DG~I~I-WDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
...++ .|..+.|+....|.++.+ |..-.|......+....+..-+ -.-|+ -++++.....+.++-
T Consensus 921 llqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgp-SLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 921 LLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGP-SLVTAQNGNILGVYA 986 (1034)
T ss_pred hhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCc-eeEEeccCcEEEEEe
Confidence 22222 356677888888999998 9877776655554333322111 11243 456655544454443
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-07 Score=97.69 Aligned_cols=136 Identities=15% Similarity=0.188 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcE--EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 338 ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERR--CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 338 V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~--~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
..++.|++ .+.-++++-.+|.+.+-+. +... .++.++.|.-......|+... ++++++|+.|+
T Consensus 124 ~lslD~~~-~~~~i~vs~s~G~~~~v~~-t~~~le~vq~wk~He~E~Wta~f~~~~-------------pnlvytGgDD~ 188 (339)
T KOG0280|consen 124 ALSLDIST-SGTKIFVSDSRGSISGVYE-TEMVLEKVQTWKVHEFEAWTAKFSDKE-------------PNLVYTGGDDG 188 (339)
T ss_pred eeEEEeec-cCceEEEEcCCCcEEEEec-ceeeeeecccccccceeeeeeecccCC-------------CceEEecCCCc
Confidence 34677888 5777999999999985554 2222 334788888888777776554 38999999999
Q ss_pred cEEEEEccCCCeEEEE-EccccccEeEEEEec-CCCEEEEEEcCCeEEEEECC-CCceEEEEecCCceEEEEEecC
Q psy307 416 RVKLWEVYKEHRCVRT-YYGHRQAVRDICFNN-TGTNFISAGYDRYLKLWDTE-SGECISRFTSRKVAYCVKFHPD 488 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~-l~~H~~~V~sl~fsp-dg~~l~S~s~Dg~I~lWDl~-t~~~i~~~~~~~~v~~v~~~p~ 488 (1019)
.+..||++..+..+.. ..-|...|.+|.-+| .+.++++|++|-.|++||++ -++++..-...+.|..+..+|.
T Consensus 189 ~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 189 SLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPE 264 (339)
T ss_pred eEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecch
Confidence 9999999866665555 677999999998886 46789999999999999998 5676665555566666666664
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.3e-05 Score=85.07 Aligned_cols=224 Identities=15% Similarity=0.124 Sum_probs=140.8
Q ss_pred EEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEc-CCCCceeEEEeecCCCCcEEEEEeCCCcEE
Q psy307 340 AIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFN-NTGTNFISAIRWFPKSAHLLLSCSMDCRVK 418 (1019)
Q Consensus 340 ~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fs-pdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~ 418 (1019)
+++|.+..+.++++.-..+.|..|+..........+.+ ...+.+. +++ .|+.+...+. .
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g---------------~l~v~~~~~~-~ 63 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDG---------------RLYVADSGGI-A 63 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEECTTS---------------EEEEEETTCE-E
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEccCC---------------EEEEEEcCce-E
Confidence 57788866888888888999999998554332222222 5555555 444 4555555444 5
Q ss_pred EEEccCCCeEEEEEcc-----ccccEeEEEEecCCCEEEEEEcC--------CeEEEEECCCCceEEEEecCCceEEEEE
Q psy307 419 LWEVYKEHRCVRTYYG-----HRQAVRDICFNNTGTNFISAGYD--------RYLKLWDTESGECISRFTSRKVAYCVKF 485 (1019)
Q Consensus 419 IWDl~~~~~~~~~l~~-----H~~~V~sl~fspdg~~l~S~s~D--------g~I~lWDl~t~~~i~~~~~~~~v~~v~~ 485 (1019)
++|+.. +........ .....+.+++.++|+..++.... |.|..++.. ++.......-
T Consensus 64 ~~d~~~-g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~-------- 133 (246)
T PF08450_consen 64 VVDPDT-GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL-------- 133 (246)
T ss_dssp EEETTT-TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE--------
T ss_pred EEecCC-CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc--------
Confidence 558733 333222221 34668899999999977776644 456666665 4432222211
Q ss_pred ecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEE-EEecCCeEEEEEccCccc-ccceeEEe-ccccccceEEEE
Q psy307 486 HPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLA-CQSMDNKILIFSALNRFK-LNRKKTFE-GHMVAGYACSLD 562 (1019)
Q Consensus 486 ~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~La-sgs~Dg~I~iwd~~~~~~-~~~~~~l~-gh~~~~~V~~v~ 562 (1019)
.....++|+|+++.|+ +-+..+.|..|++..... +.....+. .....+..-.++
T Consensus 134 -----------------------~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~ 190 (246)
T PF08450_consen 134 -----------------------GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLA 190 (246)
T ss_dssp -----------------------SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEE
T ss_pred -----------------------ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcce
Confidence 2234677888887665 667788999999864322 22223331 122113578899
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEc-CCCCcEEEEEe
Q psy307 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWH-PHEPSKVVTAG 617 (1019)
Q Consensus 563 fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~s-p~~~~~l~s~s 617 (1019)
+..+|++.++....+.|.++|.. |+++..+......+++++|. ++...+++|.+
T Consensus 191 vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 191 VDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred EcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 99999988888889999999977 99998888665689999994 55555666543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-06 Score=102.34 Aligned_cols=208 Identities=13% Similarity=0.086 Sum_probs=120.6
Q ss_pred eEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC--cEEEEEccCCCeEEEEEcccc
Q psy307 359 RVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC--RVKLWEVYKEHRCVRTYYGHR 436 (1019)
Q Consensus 359 ~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg--~I~IWDl~~~~~~~~~l~~H~ 436 (1019)
.|.++|.... . .+.+..+...+.+..|+|||. .++++...++ .|.+||+..+. .. .+....
T Consensus 199 ~l~i~d~dG~-~-~~~l~~~~~~~~~p~wSPDG~-------------~La~~s~~~g~~~L~~~dl~tg~-~~-~lt~~~ 261 (448)
T PRK04792 199 QLMIADYDGY-N-EQMLLRSPEPLMSPAWSPDGR-------------KLAYVSFENRKAEIFVQDIYTQV-RE-KVTSFP 261 (448)
T ss_pred EEEEEeCCCC-C-ceEeecCCCcccCceECCCCC-------------EEEEEEecCCCcEEEEEECCCCC-eE-EecCCC
Confidence 5666676332 2 234455667888889999984 2333333333 58888884433 21 122222
Q ss_pred ccEeEEEEecCCCEEEE-EEcCCe--EEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccE
Q psy307 437 QAVRDICFNNTGTNFIS-AGYDRY--LKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPA 513 (1019)
Q Consensus 437 ~~V~sl~fspdg~~l~S-~s~Dg~--I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~ 513 (1019)
+......|+|||+.|+. .+.++. |.+||+.+++... +..+ ......
T Consensus 262 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~------------------------------~~~~~~ 310 (448)
T PRK04792 262 GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-ITRH------------------------------RAIDTE 310 (448)
T ss_pred CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccC------------------------------CCCccc
Confidence 33446799999998764 555664 7777887765422 1111 112344
Q ss_pred EEEcCCCCEEEEEec-CC--eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCC
Q psy307 514 VTSSPNNKWLACQSM-DN--KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD-G--KCYIWDWKTT 587 (1019)
Q Consensus 514 v~~spdg~~Lasgs~-Dg--~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D-G--~I~IWDl~t~ 587 (1019)
.+|+|+|++|+..+. ++ .|.++|+.++.. .. .++.+. .....+|+|||++|+..+.+ + .|.++|+.++
T Consensus 311 p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-~~-Lt~~g~----~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 311 PSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-SR-LTFEGE----QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCE-EE-EecCCC----CCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 678899988876654 33 566677765421 11 122222 23457899999998776543 3 4666788887
Q ss_pred ceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcE
Q psy307 588 KLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAAT 622 (1019)
Q Consensus 588 ~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I 622 (1019)
+.. .+... .......|+|+|..++++...+|.-
T Consensus 385 ~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~ 417 (448)
T PRK04792 385 AMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQ 417 (448)
T ss_pred CeE-EccCC-CCCCCceECCCCCEEEEEEecCCce
Confidence 653 23222 1223457999996555666555543
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.3e-06 Score=105.75 Aligned_cols=265 Identities=14% Similarity=0.096 Sum_probs=154.0
Q ss_pred EEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecc-cCccE-----eEEEEcCCCCceeEEEeecCCCCcEEEEEe
Q psy307 339 SAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG-HRQAV-----RDICFNNTGTNFISAIRWFPKSAHLLLSCS 412 (1019)
Q Consensus 339 ~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g-h~~~V-----~~i~fspdg~~~vs~i~~~p~~~~~L~sgs 412 (1019)
..+++++.++.++++-+.++.|++||.. + ..+..+.+ ..... ....|. ...++++.++++.+.++-.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G-~~i~~ig~~g~~G~~dG~~~~a~f~-----~P~GIavd~~gn~LYVaDt 643 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-G-NFIVQIGSTGEEGLRDGSFEDATFN-----RPQGLAYNAKKNLLYVADT 643 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-C-CEEEEEccCCCcCCCCCchhccccC-----CCcEEEEeCCCCEEEEEeC
Confidence 3578887667888888899999999973 3 23333322 11000 000010 0123444444334455555
Q ss_pred CCCcEEEEEccCCCeEEEEEcc--c---------------cccEeEEEEec-CCCEEEEEEcCCeEEEEECCCCceEEEE
Q psy307 413 MDCRVKLWEVYKEHRCVRTYYG--H---------------RQAVRDICFNN-TGTNFISAGYDRYLKLWDTESGECISRF 474 (1019)
Q Consensus 413 ~Dg~I~IWDl~~~~~~~~~l~~--H---------------~~~V~sl~fsp-dg~~l~S~s~Dg~I~lWDl~t~~~i~~~ 474 (1019)
..+.|+++|+.. + .+.++.+ . -..-..++++| ++..+++.+.++.|++||..++... .+
T Consensus 644 ~n~~Ir~id~~~-~-~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~ 720 (1057)
T PLN02919 644 ENHALREIDFVN-E-TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VF 720 (1057)
T ss_pred CCceEEEEecCC-C-EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EE
Confidence 667899999733 2 2333311 0 11235789999 5666777778899999999877542 22
Q ss_pred ecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEE-EEEecCCeEEEEEccCcccccce-------
Q psy307 475 TSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWL-ACQSMDNKILIFSALNRFKLNRK------- 546 (1019)
Q Consensus 475 ~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~L-asgs~Dg~I~iwd~~~~~~~~~~------- 546 (1019)
.. ++...... ..............++++|+|+.| ++-+.++.|++||+.++......
T Consensus 721 ~G-----------~G~~~~~~----g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~ 785 (1057)
T PLN02919 721 SG-----------DGYERNLN----GSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFS 785 (1057)
T ss_pred ec-----------CCccccCC----CCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccC
Confidence 21 11000000 000001122345679999999844 55566789999998764211000
Q ss_pred ---eEEeccc------cccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee-------------ccCCCEEEEE
Q psy307 547 ---KTFEGHM------VAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK-------------AHDGVCISTL 604 (1019)
Q Consensus 547 ---~~l~gh~------~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~-------------~h~~~V~sl~ 604 (1019)
..+.... .-.....++++++|.++++-+.+++|++||..++....... +.-....+++
T Consensus 786 ~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIa 865 (1057)
T PLN02919 786 DNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLA 865 (1057)
T ss_pred cccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEE
Confidence 0000000 00124588999999988888899999999998876543221 1112467899
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeccce
Q psy307 605 WHPHEPSKVVTAGWDAATAKVQDANI 630 (1019)
Q Consensus 605 ~sp~~~~~l~s~s~Dg~I~iwwd~~i 630 (1019)
++++| .++++-+.+++|++| +.+.
T Consensus 866 vd~dG-~lyVaDt~Nn~Irvi-d~~~ 889 (1057)
T PLN02919 866 LGENG-RLFVADTNNSLIRYL-DLNK 889 (1057)
T ss_pred EeCCC-CEEEEECCCCEEEEE-ECCC
Confidence 99988 588888888888765 4433
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.3e-06 Score=88.46 Aligned_cols=244 Identities=16% Similarity=0.189 Sum_probs=147.9
Q ss_pred CCCCeEEEEEcC--CCCc-EEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEE
Q psy307 334 HTKGISAIRWFP--KSAH-LLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLS 410 (1019)
Q Consensus 334 H~~~V~~i~fsp--d~g~-lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~s 410 (1019)
.+..+..+.|.- .+++ .++-+..+|.|.++..... .....+. ++.+...+.. ...++.|++.. .-+++
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~-~ss~~L~----~ls~~ki~~~---~~lslD~~~~~-~~i~v 138 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDED-ESSVHLR----GLSSKKISVV---EALSLDISTSG-TKIFV 138 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccc-eeeeeec----ccchhhhhhe---eeeEEEeeccC-ceEEE
Confidence 344667777753 3455 6677788889988876322 2222222 2222221111 12233444433 34788
Q ss_pred EeCCCcEEEEEccCCC--eEEEEEccccccEeEEEEecC-CCEEEEEEcCCeEEEEECC-CCceEEEEecCCceEEEEEe
Q psy307 411 CSMDCRVKLWEVYKEH--RCVRTYYGHRQAVRDICFNNT-GTNFISAGYDRYLKLWDTE-SGECISRFTSRKVAYCVKFH 486 (1019)
Q Consensus 411 gs~Dg~I~IWDl~~~~--~~~~~l~~H~~~V~sl~fspd-g~~l~S~s~Dg~I~lWDl~-t~~~i~~~~~~~~v~~v~~~ 486 (1019)
+-.+|.+.+-+. +.. +.++.++.|.-.++...|+.. .+.+.+||.|+.+.-||++ .++.+..- .
T Consensus 139 s~s~G~~~~v~~-t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n---~-------- 206 (339)
T KOG0280|consen 139 SDSRGSISGVYE-TEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN---S-------- 206 (339)
T ss_pred EcCCCcEEEEec-ceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec---c--------
Confidence 888888885554 222 334578999999999999864 3578899999999999998 33332211 0
Q ss_pred cCCCeeeeccCCCceeeeCCCCCcccEEEEc-CCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcC
Q psy307 487 PDEDKQHLDIPVDMKYIADPTMHSMPAVTSS-PNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP 565 (1019)
Q Consensus 487 p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~s-pdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp 565 (1019)
..|...|.++.-+ |.+.+|++|+.|..|++||.++-.+ .+......|.|..+.++|
T Consensus 207 ------------------kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k-----Pl~~~~v~GGVWRi~~~p 263 (339)
T KOG0280|consen 207 ------------------KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK-----PLFKAKVGGGVWRIKHHP 263 (339)
T ss_pred ------------------eeeecceEEEecCCCCCceEEEeccccceeeeehhcccC-----ccccCccccceEEEEecc
Confidence 0111223333333 3578999999999999999985432 222223346799999999
Q ss_pred C--CCEEEEEeCCCeEEEEeCCCC--c---eeeeeeccCCCEEEEEEcCCCCcEEEEEe-CCCcEE
Q psy307 566 D--MSYLISGDADGKCYIWDWKTT--K---LFKKWKAHDGVCISTLWHPHEPSKVVTAG-WDAATA 623 (1019)
Q Consensus 566 d--g~~Lasgs~DG~I~IWDl~t~--~---~l~~l~~h~~~V~sl~~sp~~~~~l~s~s-~Dg~I~ 623 (1019)
- +..|+++-..| .+|-+...+ + .+...+.|.+-+.+-.|.... ..++||+ .|..++
T Consensus 264 ~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~-~~lATCsFYDk~~~ 327 (339)
T KOG0280|consen 264 EIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKD-SFLATCSFYDKKIR 327 (339)
T ss_pred hhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeecccccccc-ceeeeeecccccee
Confidence 4 33455554555 556665443 3 344556788888888895543 5788876 344444
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-05 Score=102.42 Aligned_cols=263 Identities=11% Similarity=0.116 Sum_probs=152.4
Q ss_pred CCCeeeeCCCCCceeeecCCCCCCccCCccceeeecc--------------CCCCeEEEEEcCCCCcEEEEeeCCCeEEE
Q psy307 297 QGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEG--------------HTKGISAIRWFPKSAHLLLSCSMDCRVKL 362 (1019)
Q Consensus 297 ~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~g--------------H~~~V~~i~fspd~g~lLaSgs~Dg~I~I 362 (1019)
.|+.+++-...+.|.+++..+.. +..+.+ +-.....|++.++++.+.++-...+.|++
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~G~~--------i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLDGNF--------IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCCCCE--------EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 46677777777788888765321 111111 12245789999864444555556678999
Q ss_pred EecCCCcEEEEEecccCccEeEEEEcCC--C----CceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcc--
Q psy307 363 WEVYKERRCVRTYYGHRQAVRDICFNNT--G----TNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG-- 434 (1019)
Q Consensus 363 Wdl~~~~~~~~~~~gh~~~V~~i~fspd--g----~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~-- 434 (1019)
+|..++ .+.++.+-.. ....+... + -..-..++++|.++.++++.+.++.|++||..... . ..+.+
T Consensus 651 id~~~~--~V~tlag~G~--~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~-v-~~~~G~G 724 (1057)
T PLN02919 651 IDFVNE--TVRTLAGNGT--KGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV-T-RVFSGDG 724 (1057)
T ss_pred EecCCC--EEEEEeccCc--ccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe-E-EEEecCC
Confidence 997432 2444432100 00000000 0 00012345555555788888889999999984332 2 11111
Q ss_pred -------c------cccEeEEEEecCCCE-EEEEEcCCeEEEEECCCCceEEEEecCCce---EEEEEecCCCeeeeccC
Q psy307 435 -------H------RQAVRDICFNNTGTN-FISAGYDRYLKLWDTESGECISRFTSRKVA---YCVKFHPDEDKQHLDIP 497 (1019)
Q Consensus 435 -------H------~~~V~sl~fspdg~~-l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v---~~v~~~p~~~~~~~~~~ 497 (1019)
+ -.....|+++|+++. +++.+.++.|++||+.++..... ...... ....|...+
T Consensus 725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~-~gg~~~~~~~l~~fG~~d-------- 795 (1057)
T PLN02919 725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLL-AGGDPTFSDNLFKFGDHD-------- 795 (1057)
T ss_pred ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEE-EecccccCcccccccCCC--------
Confidence 1 123567899999985 55666679999999987753211 111100 000110000
Q ss_pred CCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccc------------cccceEEEEEcC
Q psy307 498 VDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHM------------VAGYACSLDFSP 565 (1019)
Q Consensus 498 ~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~------------~~~~V~~v~fsp 565 (1019)
. ............++++++|..+++.+.++.|++||..++... ++.+.. .-.....+++++
T Consensus 796 --G-~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~----tiaG~G~~G~~dG~~~~a~l~~P~GIavd~ 868 (1057)
T PLN02919 796 --G-VGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT----TLAGTGKAGFKDGKALKAQLSEPAGLALGE 868 (1057)
T ss_pred --C-chhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE----EEeccCCcCCCCCcccccccCCceEEEEeC
Confidence 0 000011123457899999999999999999999998765322 221110 002467899999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCce
Q psy307 566 DMSYLISGDADGKCYIWDWKTTKL 589 (1019)
Q Consensus 566 dg~~Lasgs~DG~I~IWDl~t~~~ 589 (1019)
+|+++++-+.+++|++||+.+++.
T Consensus 869 dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 869 NGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCEEEEECCCCEEEEEECCCCcc
Confidence 999888888999999999998865
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.1e-07 Score=94.48 Aligned_cols=253 Identities=20% Similarity=0.303 Sum_probs=160.6
Q ss_pred CCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE----EEecccCc------------cEeEEEEcCCCCceeEEE
Q psy307 335 TKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV----RTYYGHRQ------------AVRDICFNNTGTNFISAI 398 (1019)
Q Consensus 335 ~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~----~~~~gh~~------------~V~~i~fspdg~~~vs~i 398 (1019)
...|+++.|.. .|.+|++|...|.|.++.-.....|. ..+++|.. .|..|.|..++
T Consensus 26 ad~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t------- 97 (460)
T COG5170 26 ADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT------- 97 (460)
T ss_pred cceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC-------
Confidence 34799999987 58999999999999999865443332 23566642 34555554433
Q ss_pred eecCCCCcEEEEEeCCCcEEEEEccCC------------------C------------------e-----EEEEE-cccc
Q psy307 399 RWFPKSAHLLLSCSMDCRVKLWEVYKE------------------H------------------R-----CVRTY-YGHR 436 (1019)
Q Consensus 399 ~~~p~~~~~L~sgs~Dg~I~IWDl~~~------------------~------------------~-----~~~~l-~~H~ 436 (1019)
+...++..+.|.+|++|.++.. + . +.+.+ ..|.
T Consensus 98 -----~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~ 172 (460)
T COG5170 98 -----GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHP 172 (460)
T ss_pred -----CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccce
Confidence 3357778889999999998532 1 0 11112 4688
Q ss_pred ccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEE
Q psy307 437 QAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTS 516 (1019)
Q Consensus 437 ~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~ 516 (1019)
--|+++.|+.|...++++ .|-.|.+|+++-...- ..-+..-|.. ....+.-|++..|
T Consensus 173 yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~s--------FnIVDiKP~n--------------meeLteVItSaeF 229 (460)
T COG5170 173 YHINSISFNSDKETLLSA-DDLRINLWNLEIIDGS--------FNIVDIKPHN--------------MEELTEVITSAEF 229 (460)
T ss_pred eEeeeeeecCchheeeec-cceeeeeccccccCCc--------eEEEeccCcc--------------HHHHHHHHhhccc
Confidence 889999999998888775 5788999998632211 0111111110 0011233566777
Q ss_pred cCCC-CEEEEEecCCeEEEEEccCccc-ccceeEE----eccc------cccceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy307 517 SPNN-KWLACQSMDNKILIFSALNRFK-LNRKKTF----EGHM------VAGYACSLDFSPDMSYLISGDADGKCYIWDW 584 (1019)
Q Consensus 517 spdg-~~Lasgs~Dg~I~iwd~~~~~~-~~~~~~l----~gh~------~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl 584 (1019)
+|.. ..+...+..|.|++-|++.... ....+.+ .+.. ....|..+.|+++|+|+++-+.- +|+|||+
T Consensus 230 hp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDv 308 (460)
T COG5170 230 HPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDV 308 (460)
T ss_pred CHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEec
Confidence 7754 5566677899999999984211 1111111 1110 11457889999999999988764 7999999
Q ss_pred CCC-ceeeeeeccCC------------CE---EEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 585 KTT-KLFKKWKAHDG------------VC---ISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 585 ~t~-~~l~~l~~h~~------------~V---~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
... .++.++..|.. .| ..+.|+-+. ..+.+|+..+...++
T Consensus 309 nm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~-~~v~sgsy~NNfgiy 364 (460)
T COG5170 309 NMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDD-KHVLSGSYSNNFGIY 364 (460)
T ss_pred ccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCc-ccccccccccceeee
Confidence 764 56777765531 22 346677766 578888877766444
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.3e-05 Score=99.43 Aligned_cols=361 Identities=13% Similarity=0.111 Sum_probs=197.0
Q ss_pred CeEEEEEcCCCCcEEEEeeC-CC--eEEEEecCCCc--EEEEEec-----ccCccEeEEEEcCCCCceeEEEeecCCCCc
Q psy307 337 GISAIRWFPKSAHLLLSCSM-DC--RVKLWEVYKER--RCVRTYY-----GHRQAVRDICFNNTGTNFISAIRWFPKSAH 406 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~-Dg--~I~IWdl~~~~--~~~~~~~-----gh~~~V~~i~fspdg~~~vs~i~~~p~~~~ 406 (1019)
.+...+|.+.+..++++.+. .. .|.+....... ..+..+. .....|.++.+.++. .
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~--------------~ 88 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADS--------------E 88 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCC--------------C
Confidence 56677777765444443332 22 23333332221 1222221 123456666666655 5
Q ss_pred EEEEEeCCCcEEEEEc--cCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecC------C
Q psy307 407 LLLSCSMDCRVKLWEV--YKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSR------K 478 (1019)
Q Consensus 407 ~L~sgs~Dg~I~IWDl--~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~------~ 478 (1019)
.++.+..+|.|.+... ......+.....-...|.+++||||+..++.++.+++|.+.+ ++...+...... .
T Consensus 89 ~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~~~~~ 167 (928)
T PF04762_consen 89 SLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLDSDDFGES 167 (928)
T ss_pred cEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecCccccCCC
Confidence 6777888888888821 123344444455678999999999999999999999988875 555555554322 2
Q ss_pred ceEEEEEecCCCeeeec----------cCCCc---eeeeCCCCCcccEEEEcCCCCEEEEEec---C---CeEEEEEccC
Q psy307 479 VAYCVKFHPDEDKQHLD----------IPVDM---KYIADPTMHSMPAVTSSPNNKWLACQSM---D---NKILIFSALN 539 (1019)
Q Consensus 479 ~v~~v~~~p~~~~~~~~----------~~~~~---~~i~~~~~~~i~~v~~spdg~~Lasgs~---D---g~I~iwd~~~ 539 (1019)
...++.|........-. -+... ..... ....-..++|-.||.++|+.+. . ..|+||+-..
T Consensus 168 ~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG 246 (928)
T PF04762_consen 168 KHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG 246 (928)
T ss_pred ceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc
Confidence 33445554322211100 00000 00011 3345678999999999999875 3 4789998653
Q ss_pred cccccceeEEeccccccceEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeeeee----ccCCCEEEEEEcCCCCcE
Q psy307 540 RFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA---DGKCYIWDWKTTKLFKKWK----AHDGVCISTLWHPHEPSK 612 (1019)
Q Consensus 540 ~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~---DG~I~IWDl~t~~~l~~l~----~h~~~V~sl~~sp~~~~~ 612 (1019)
. + ..... ...+--.+++|-|.|++||+.-. ...|.+|. ++|-....|. .....|..+.|++++ ..
T Consensus 247 ~--L---~stSE-~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds-~i 318 (928)
T PF04762_consen 247 E--L---QSTSE-PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDS-EI 318 (928)
T ss_pred e--E---Eeccc-cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCC-CE
Confidence 2 1 11111 12233446899999999998764 34678887 4554444443 345689999999998 46
Q ss_pred EEEEeCCCcEEEEecccee---eeeeeccccCC-ceeecccccccc----hh-hhhhhc--ccccCCCc------eeEEE
Q psy307 613 VVTAGWDAATAKVQDANIV---KIAVEMEKQVP-QLYQFNQTLTLS----SI-IQEICS--GWSLSDSE------QYALQ 675 (1019)
Q Consensus 613 l~s~s~Dg~I~iwwd~~i~---ki~~e~~~~v~-ql~~l~~~~~LS----s~-~~~~~~--~wsls~~e------~~al~ 675 (1019)
|+..-.| .|.+|...|+. |.......... ..+..+...++. .. ..-.+. .|....+. .-...
T Consensus 319 LAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~va 397 (928)
T PF04762_consen 319 LAVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVA 397 (928)
T ss_pred EEEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEE
Confidence 6666655 48777666642 33222222111 112222211111 00 111111 12222111 11122
Q ss_pred eecCCCceEEeccccccc----------cCCceEEEEecCCccHHHHHhhcCCCchhhHH
Q psy307 676 FSETNNKNYITEKNRNEI----------KNGSVLRLAFSASKTADDILSKLSDKNASLEE 725 (1019)
Q Consensus 676 ~sd~~~~~~it~~~~~~I----------~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~ 725 (1019)
.-||... .+|.-....+ -..+|.+++|+++... ++.-..||++.+|.
T Consensus 398 VIDG~~l-llTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~--~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 398 VIDGNKL-LLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSR--FAVLTSDGSLSIYE 454 (928)
T ss_pred EEeCCeE-EEecccccCCCchHhceEEcCCCCcEEEEEeCCCCe--EEEEECCCCEEEEE
Confidence 2233333 4554444433 1788999999999843 77777888886665
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=118.42 Aligned_cols=213 Identities=17% Similarity=0.184 Sum_probs=146.8
Q ss_pred cEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeE
Q psy307 349 HLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRC 428 (1019)
Q Consensus 349 ~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~ 428 (1019)
+.+..+..++...-|....... .++.+-..|.++.-+|.. .+.++|+.||.|++|....+...
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~---~~k~~v~~v~r~~sHp~~--------------~~Yltgs~dgsv~~~~w~~~~~v 2243 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASV---MIKHPVENVRRMTSHPSD--------------PYYLTGSQDGSVRMFEWGHGQQV 2243 (2439)
T ss_pred ccCCcccCCccccceeccccee---EeecccCceeeecCCCCC--------------ceEEecCCCceEEEEeccCCCeE
Confidence 3444455566666666533322 233345566666666654 47889999999999999666655
Q ss_pred EEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCC
Q psy307 429 VRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTM 508 (1019)
Q Consensus 429 ~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~ 508 (1019)
+..-.+-...|+.+.|+.+|+.+..+..||.+.+|.+. .++....+.+.
T Consensus 2244 ~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchn------------------------------ 2292 (2439)
T KOG1064|consen 2244 VCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHN------------------------------ 2292 (2439)
T ss_pred EEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCC------------------------------
Confidence 55545555889999999999999999999999999986 22222222211
Q ss_pred CcccEEEEcCCCCEEEEE---ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy307 509 HSMPAVTSSPNNKWLACQ---SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWK 585 (1019)
Q Consensus 509 ~~i~~v~~spdg~~Lasg---s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~ 585 (1019)
.....+.|-. ..+++. +.++.+.+||..-......+. ..|. +.++++++-|..+.|++|+.+|.|++||++
T Consensus 2293 k~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~--~gaT~l~~~P~~qllisggr~G~v~l~D~r 2366 (2439)
T KOG1064|consen 2293 KALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHD--GGATVLAYAPKHQLLISGGRKGEVCLFDIR 2366 (2439)
T ss_pred ccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecC--CCceEEEEcCcceEEEecCCcCcEEEeehH
Confidence 1111222211 234443 346789999986433222333 5565 568999999999999999999999999999
Q ss_pred CCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 586 TTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 586 t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
..++++.++. |+ .. .++++++..|.|++|-
T Consensus 2367 qrql~h~~~~---------~~-~~-~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2367 QRQLRHTFQA---------LD-TR-EYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred HHHHHHHhhh---------hh-hh-heeeccCcccceEEEE
Confidence 9999988876 44 22 5899999999998873
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.3e-06 Score=86.38 Aligned_cols=220 Identities=13% Similarity=-0.001 Sum_probs=140.4
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR 427 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~ 427 (1019)
..+||.||.-|...+|...+....+.....|...|+-+.-..+. ..-+..++.|.++++.++.....
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~-------------~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL-------------KFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccc-------------ccceeeccCCcceeEEEEecCcc
Confidence 35799999999999999965554444444454433322111111 13467788898888888843322
Q ss_pred EEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCC
Q psy307 428 CVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGE-CISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADP 506 (1019)
Q Consensus 428 ~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~-~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~ 506 (1019)
...... ..-.+.++++++|++++++.+....|..|.+.... .+.... ..+
T Consensus 151 ~~~~h~-~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~----------------------------~a~ 201 (344)
T KOG4532|consen 151 KFAVHN-QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY----------------------------EAP 201 (344)
T ss_pred cceeec-cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeE----------------------------ecc
Confidence 111111 11338889999999999999999999999875432 111110 011
Q ss_pred CCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeE-EeccccccceEEEEEcCCCC--EEEEEeCCCeEEEEe
Q psy307 507 TMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKT-FEGHMVAGYACSLDFSPDMS--YLISGDADGKCYIWD 583 (1019)
Q Consensus 507 ~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~-l~gh~~~~~V~~v~fspdg~--~Lasgs~DG~I~IWD 583 (1019)
....--+..|+.....+|+++.||++.|||++.........+ -+.| ..|.+..+.|++.|. +|...-.-+.+.+-|
T Consensus 202 t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~-hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D 280 (344)
T KOG4532|consen 202 TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPH-HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVD 280 (344)
T ss_pred cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCC-CCCceEEEEecCCCcceEEEEecCcceEEEEE
Confidence 112233567788888999999999999999986533322222 2222 337899999999765 455555667899999
Q ss_pred CCCCceeeeeec-------cC-CCEEEEEEcCCCC
Q psy307 584 WKTTKLFKKWKA-------HD-GVCISTLWHPHEP 610 (1019)
Q Consensus 584 l~t~~~l~~l~~-------h~-~~V~sl~~sp~~~ 610 (1019)
+++++..+.+.. |. ..|.+..|+.++.
T Consensus 281 ~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 281 TRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE 315 (344)
T ss_pred cccCceeeEEecCccccccccccccccccccCCCc
Confidence 999876655432 22 2366667776664
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.61 E-value=4e-05 Score=88.81 Aligned_cols=247 Identities=11% Similarity=0.033 Sum_probs=139.2
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR 427 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~ 427 (1019)
+..++.++.+|.+..+|.. +++.+...... ..+.+ +|- . .+..++.++.+|.|..||.. .++
T Consensus 105 ~~~v~v~~~~g~l~ald~~-tG~~~W~~~~~-~~~~~---~p~---------v---~~~~v~v~~~~g~l~a~d~~-tG~ 166 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAE-DGKELWRAKLS-SEVLS---PPL---------V---ANGLVVVRTNDGRLTALDAA-TGE 166 (377)
T ss_pred CCEEEEEcCCCEEEEEECC-CCcEeeeeccC-ceeec---CCE---------E---ECCEEEEECCCCeEEEEEcC-CCc
Confidence 4577888899999999984 44444433321 11111 010 0 12467778889999999984 444
Q ss_pred EEEEEccccccE-----eEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCc---------------e-----EE
Q psy307 428 CVRTYYGHRQAV-----RDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKV---------------A-----YC 482 (1019)
Q Consensus 428 ~~~~l~~H~~~V-----~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~---------------v-----~~ 482 (1019)
.+..+......+ .+.... + ..++.++.++.+..+|.++|+.+........ + ..
T Consensus 167 ~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~v 244 (377)
T TIGR03300 167 RLWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQV 244 (377)
T ss_pred eeeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEE
Confidence 444443322111 111222 2 4677888899999999999987655432100 0 00
Q ss_pred EEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEE
Q psy307 483 VKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562 (1019)
Q Consensus 483 v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~ 562 (1019)
..-+.++....++..... .++.......... ...+..+++++.+|.|..+|..++..+.....+.+.. ..+..
T Consensus 245 y~~~~~g~l~a~d~~tG~-~~W~~~~~~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~----~ssp~ 317 (377)
T TIGR03300 245 YAVSYQGRVAALDLRSGR-VLWKRDASSYQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQ----LTAPA 317 (377)
T ss_pred EEEEcCCEEEEEECCCCc-EEEeeccCCccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCc----cccCE
Confidence 001112222222322211 1111111111111 2346778888899999999998774432221222211 12222
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 563 fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
. .+..|++++.+|.|+++|..+|+.+..++.+...+...-...++ .|+.++.||.|+.+
T Consensus 318 i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~--~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 318 V--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD--GLLVQTRDGDLYAF 376 (377)
T ss_pred E--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECC--EEEEEeCCceEEEe
Confidence 2 46689999999999999999999999988776543332222233 58888999998654
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=98.60 E-value=3e-07 Score=100.06 Aligned_cols=170 Identities=14% Similarity=0.137 Sum_probs=116.9
Q ss_pred ceecccCCCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccC--CCCeEEEEEcCCCCcEEEEeeCCCeEEEE
Q psy307 286 TILHIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGH--TKGISAIRWFPKSAHLLLSCSMDCRVKLW 363 (1019)
Q Consensus 286 ~~~~~~~~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH--~~~V~~i~fspd~g~lLaSgs~Dg~I~IW 363 (1019)
...+-.......|++++.+..+...-+.......+ .-+++...... ...++.+.... ...+.-.++....+.+|
T Consensus 62 ~~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~---~~kl~~~~~v~~~~~ai~~~~~~~-sv~v~dkagD~~~~di~ 137 (390)
T KOG3914|consen 62 SLAPALVLTSDSGRLVAVATSSKQRAVFDYRENPK---GAKLLDVSCVPKRPTAISFIREDT-SVLVADKAGDVYSFDIL 137 (390)
T ss_pred hccccccccCCCceEEEEEeCCCceEEEEEecCCC---cceeeeEeecccCcceeeeeeccc-eEEEEeecCCceeeeee
Confidence 33444556778889888887777654444432221 11223222222 22333333322 12233345666777788
Q ss_pred ecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEE
Q psy307 364 EVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDIC 443 (1019)
Q Consensus 364 dl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~ 443 (1019)
.+.. .+.+.+.||-+-+.+++|+||+ .+|+++..|..|+|-........-..+.||..-|..++
T Consensus 138 s~~~--~~~~~~lGhvSml~dVavS~D~--------------~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is 201 (390)
T KOG3914|consen 138 SADS--GRCEPILGHVSMLLDVAVSPDD--------------QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS 201 (390)
T ss_pred cccc--cCcchhhhhhhhhheeeecCCC--------------CEEEEecCCceEEEEecCcccchhhhccccHhheeeee
Confidence 7643 4456678999999999999998 79999999999999888555444555678999999999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCceEEEEec
Q psy307 444 FNNTGTNFISAGYDRYLKLWDTESGECISRFTS 476 (1019)
Q Consensus 444 fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~ 476 (1019)
.-++ ..|+|+|.|++|++||+.+|+++.++..
T Consensus 202 l~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 202 LTDN-YLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred eccC-ceeeecCCCCcEEEEecccCCcccccch
Confidence 9854 4599999999999999999999877754
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=8e-05 Score=80.86 Aligned_cols=279 Identities=12% Similarity=0.150 Sum_probs=172.0
Q ss_pred CCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeC---CCeEEEEecCCC-cEEE--EEecccCc
Q psy307 307 DVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSM---DCRVKLWEVYKE-RRCV--RTYYGHRQ 380 (1019)
Q Consensus 307 D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~---Dg~I~IWdl~~~-~~~~--~~~~gh~~ 380 (1019)
+..|..|.........- ...+-.+.+.++-++|+|+ ++.|+++.. +|.|-.+.+... +++. ........
T Consensus 15 s~gI~v~~ld~~~g~l~----~~~~v~~~~nptyl~~~~~-~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~ 89 (346)
T COG2706 15 SQGIYVFNLDTKTGELS----LLQLVAELGNPTYLAVNPD-QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS 89 (346)
T ss_pred CCceEEEEEeCcccccc----hhhhccccCCCceEEECCC-CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC
Confidence 56677787764332111 1223356678899999996 677777754 578888887543 3322 11112223
Q ss_pred cEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC-CCcEEEEEccCCCeEEEE--Ecccccc----------EeEEEEecC
Q psy307 381 AVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM-DCRVKLWEVYKEHRCVRT--YYGHRQA----------VRDICFNNT 447 (1019)
Q Consensus 381 ~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~-Dg~I~IWDl~~~~~~~~~--l~~H~~~----------V~sl~fspd 447 (1019)
+-..++++++| .+++++.. .|.|.++-+...+.+... ...|.+. +....+.|+
T Consensus 90 ~p~yvsvd~~g--------------~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~ 155 (346)
T COG2706 90 PPCYVSVDEDG--------------RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD 155 (346)
T ss_pred CCeEEEECCCC--------------CEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCC
Confidence 33778888888 46666554 588999998665544322 3345444 788899999
Q ss_pred CCEEEEEEcC-CeEEEEECCCCceEE----EEecCCceEEEEEecCCCeeeeccCC--------------CceeeeC---
Q psy307 448 GTNFISAGYD-RYLKLWDTESGECIS----RFTSRKVAYCVKFHPDEDKQHLDIPV--------------DMKYIAD--- 505 (1019)
Q Consensus 448 g~~l~S~s~D-g~I~lWDl~t~~~i~----~~~~~~~v~~v~~~p~~~~~~~~~~~--------------~~~~i~~--- 505 (1019)
++++++.... -.|.+|++..|.... .+..+..+..+.|||++....+-... ....+..
T Consensus 156 ~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~t 235 (346)
T COG2706 156 GRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDT 235 (346)
T ss_pred CCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeecc
Confidence 9998887642 469999999776532 33456778999999999866541111 0111100
Q ss_pred -----CCCCcccEEEEcCCCCEEEEEec-CCeEEEEEccCc-ccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC-
Q psy307 506 -----PTMHSMPAVTSSPNNKWLACQSM-DNKILIFSALNR-FKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG- 577 (1019)
Q Consensus 506 -----~~~~~i~~v~~spdg~~Lasgs~-Dg~I~iwd~~~~-~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG- 577 (1019)
........+.++|+|++|.++.. ...|.+|.+... ..+........+ +.......|+|+|++|+++..++
T Consensus 236 lP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te--g~~PR~F~i~~~g~~Liaa~q~sd 313 (346)
T COG2706 236 LPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE--GQFPRDFNINPSGRFLIAANQKSD 313 (346)
T ss_pred CccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC--CcCCccceeCCCCCEEEEEccCCC
Confidence 11234557889999999987753 348888888643 222222222222 13367889999999999888765
Q ss_pred eEEEEeC--CCCceeeeee-ccCCCEEEEEEc
Q psy307 578 KCYIWDW--KTTKLFKKWK-AHDGVCISTLWH 606 (1019)
Q Consensus 578 ~I~IWDl--~t~~~l~~l~-~h~~~V~sl~~s 606 (1019)
.|.+|.. .||++-.... .......|+.|.
T Consensus 314 ~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 314 NITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred cEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 5777755 4665544332 233344566554
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-05 Score=89.03 Aligned_cols=144 Identities=11% Similarity=0.114 Sum_probs=110.1
Q ss_pred cCCCCeEEEEEcCCCCcEEEEeeCCC-eEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEE
Q psy307 333 GHTKGISAIRWFPKSAHLLLSCSMDC-RVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSC 411 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLaSgs~Dg-~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sg 411 (1019)
+|.++|.-..+.-+ +.-++.|..|| .+-|+|.. ++ .+..+...-+.|.++..+++| +.++.+
T Consensus 357 ~~~~~VrY~r~~~~-~e~~vigt~dgD~l~iyd~~-~~-e~kr~e~~lg~I~av~vs~dG--------------K~~vva 419 (668)
T COG4946 357 GKKGGVRYRRIQVD-PEGDVIGTNDGDKLGIYDKD-GG-EVKRIEKDLGNIEAVKVSPDG--------------KKVVVA 419 (668)
T ss_pred CCCCceEEEEEccC-CcceEEeccCCceEEEEecC-Cc-eEEEeeCCccceEEEEEcCCC--------------cEEEEE
Confidence 67888998888886 55888999999 89999983 33 345566677889999999999 678888
Q ss_pred eCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcC----CeEEEEECCCCceEEEEecCCceEEEEEec
Q psy307 412 SMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD----RYLKLWDTESGECISRFTSRKVAYCVKFHP 487 (1019)
Q Consensus 412 s~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~D----g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p 487 (1019)
.....+.+.|+ .++.....-+...+-|+.+.|+|++++|+-+--+ ..|+++|+.+++....-+....-.+-+|.|
T Consensus 420 Ndr~el~vidi-dngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~ 498 (668)
T COG4946 420 NDRFELWVIDI-DNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDP 498 (668)
T ss_pred cCceEEEEEEe-cCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCC
Confidence 88889999999 4555555555667889999999999999876555 469999999988766555444445566777
Q ss_pred CCCeeee
Q psy307 488 DEDKQHL 494 (1019)
Q Consensus 488 ~~~~~~~ 494 (1019)
++..+.+
T Consensus 499 d~ryLYf 505 (668)
T COG4946 499 DGRYLYF 505 (668)
T ss_pred CCcEEEE
Confidence 7665443
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.7e-06 Score=87.33 Aligned_cols=206 Identities=13% Similarity=0.231 Sum_probs=141.0
Q ss_pred eeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC---CcEEEEEec
Q psy307 300 SFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK---ERRCVRTYY 376 (1019)
Q Consensus 300 ~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~---~~~~~~~~~ 376 (1019)
-+++.+.|.++++|....... +-|. ....-..+++++.+.++ ...|+.|-..|++.-+.+.. .....+.+.
T Consensus 38 gv~~~s~drtvrv~lkrds~q-~wps----I~~~mP~~~~~~~y~~e-~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~ 111 (404)
T KOG1409|consen 38 GVISVSEDRTVRVWLKRDSGQ-YWPS----IYHYMPSPCSAMEYVSE-SRRLYVGQDNGTVTEFALSEDFNKMTFLKDYL 111 (404)
T ss_pred CeEEccccceeeeEEeccccc-cCch----hhhhCCCCceEeeeecc-ceEEEEEEecceEEEEEhhhhhhhcchhhhhh
Confidence 367888999999996543211 1111 11123458899999996 67889999999999887743 234456778
Q ss_pred ccCccEeEEEEcCCCCceeEE-----EeecCC----------------CC----cEEEEEeCCCcEEEEEcc-CCCeEEE
Q psy307 377 GHRQAVRDICFNNTGTNFISA-----IRWFPK----------------SA----HLLLSCSMDCRVKLWEVY-KEHRCVR 430 (1019)
Q Consensus 377 gh~~~V~~i~fspdg~~~vs~-----i~~~p~----------------~~----~~L~sgs~Dg~I~IWDl~-~~~~~~~ 430 (1019)
.|...|..+-|+-....++++ ++|+-. .. .+.+.|...|.|.+-.+. ..-.++.
T Consensus 112 ~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~ 191 (404)
T KOG1409|consen 112 AHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLIT 191 (404)
T ss_pred hhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEE
Confidence 899999999988776655554 333211 01 123344445555555442 3346788
Q ss_pred EEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCc
Q psy307 431 TYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHS 510 (1019)
Q Consensus 431 ~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~ 510 (1019)
.+.+|.+.+.+++|.+....+++|..|..|.+||+..++-+. +....+.+.
T Consensus 192 ~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~-----------------------------~el~gh~~k 242 (404)
T KOG1409|consen 192 TFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA-----------------------------YELQGHNDK 242 (404)
T ss_pred EEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee-----------------------------eeeccchhh
Confidence 899999999999999999999999999999999986544221 111223344
Q ss_pred ccEEEEcCCCCEEEEEecCCeEEEEEccCc
Q psy307 511 MPAVTSSPNNKWLACQSMDNKILIFSALNR 540 (1019)
Q Consensus 511 i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~ 540 (1019)
+..++.-+--+.+.+++.||.|.+|+.+..
T Consensus 243 V~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 243 VQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 555555556678899999999999998754
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.5e-08 Score=112.68 Aligned_cols=225 Identities=15% Similarity=0.149 Sum_probs=155.1
Q ss_pred CccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCC
Q psy307 324 PKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPK 403 (1019)
Q Consensus 324 p~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~ 403 (1019)
-.+.+.+++.|+..-+|++|+-+ ...|+.|+..|.|+++++ ..+.....+.+|..+|+.+.-+-+|+..+++.+|+
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv-~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S-- 1165 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNV-SSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS-- 1165 (1516)
T ss_pred hcccchhhhccccceeeEEeecC-CceEEeeeccceEEEEEc-cCccccccccccccccccccccCCcceeeeecccc--
Confidence 34667789999999999999984 778999999999999999 55566778899999999999999996333322222
Q ss_pred CCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEE
Q psy307 404 SAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCV 483 (1019)
Q Consensus 404 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v 483 (1019)
.....+|++.......+.+.+ -.++.|+.....-+.|+.-....|||++|+..+.++-.+..
T Consensus 1166 ----------~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~---- 1227 (1516)
T KOG1832|consen 1166 ----------SPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTV---- 1227 (1516)
T ss_pred ----------CchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcch----
Confidence 225678998766666665543 34568886644444455556789999999887665432110
Q ss_pred EEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEE
Q psy307 484 KFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDF 563 (1019)
Q Consensus 484 ~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~f 563 (1019)
.....-.+..|+|+.++++- || .+||++....+.....|... ..-.|
T Consensus 1228 ----------------------~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft~~------~~G~F 1274 (1516)
T KOG1832|consen 1228 ----------------------TSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFTDY------GGGGF 1274 (1516)
T ss_pred ----------------------hhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhheec------ccccc
Confidence 01112245677888887763 33 58999877544444333321 12369
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCC
Q psy307 564 SPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEP 610 (1019)
Q Consensus 564 spdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~ 610 (1019)
+|.|.-++.-+ -|||++|.++++....-+. ..+.|+..|.
T Consensus 1275 HP~g~eVIINS-----EIwD~RTF~lLh~VP~Ldq--c~VtFNstG~ 1314 (1516)
T KOG1832|consen 1275 HPSGNEVIINS-----EIWDMRTFKLLHSVPSLDQ--CAVTFNSTGD 1314 (1516)
T ss_pred cCCCceEEeec-----hhhhhHHHHHHhcCccccc--eEEEeccCcc
Confidence 99999888765 4899999999887765443 4566777663
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.9e-06 Score=94.93 Aligned_cols=258 Identities=14% Similarity=0.132 Sum_probs=153.1
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCcc--------CCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEe
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCF--------LPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWE 364 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~--------lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWd 364 (1019)
.+++...+++.|+.||-+++-......... .....-+++.||.+.|..+.|+.. .+.|-|+..+|.|.||=
T Consensus 21 ~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~-~QKLTtSDt~GlIiVWm 99 (1189)
T KOG2041|consen 21 EWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN-NQKLTTSDTSGLIIVWM 99 (1189)
T ss_pred EEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc-cccccccCCCceEEEEe
Confidence 577888899999999998887664322110 112334689999999999999984 77899999999999999
Q ss_pred cCCCcEEEEEec-ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEE
Q psy307 365 VYKERRCVRTYY-GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDIC 443 (1019)
Q Consensus 365 l~~~~~~~~~~~-gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~ 443 (1019)
++.+.-+...+. ...+.|.+++|+.+|+ .|+....||.|.+=.+....-.-..+.+. -...+.
T Consensus 100 lykgsW~EEMiNnRnKSvV~SmsWn~dG~--------------kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ 163 (1189)
T KOG2041|consen 100 LYKGSWCEEMINNRNKSVVVSMSWNLDGT--------------KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVL 163 (1189)
T ss_pred eecccHHHHHhhCcCccEEEEEEEcCCCc--------------EEEEEEccCCEEEEeeccceecchhcchh--ecccee
Confidence 876543332222 2456789999999995 44444555555444431111001111111 122568
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCC-------ceEEEEec-----CCceEEEEEe--------cCCCeeeeccC------
Q psy307 444 FNNTGTNFISAGYDRYLKLWDTESG-------ECISRFTS-----RKVAYCVKFH--------PDEDKQHLDIP------ 497 (1019)
Q Consensus 444 fspdg~~l~S~s~Dg~I~lWDl~t~-------~~i~~~~~-----~~~v~~v~~~--------p~~~~~~~~~~------ 497 (1019)
|++|.+.++.+-..|.+.++|.... .|....++ +..+..+.|. |+....++...
T Consensus 164 ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 164 WSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred ecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 9999999888888999999997543 12111111 1112333332 22222222111
Q ss_pred ----CCceeeeCCCCCcccEEEEcCCCCEEEEEecC---------CeEEEEEccCcccccceeEEeccccccceEEEEEc
Q psy307 498 ----VDMKYIADPTMHSMPAVTSSPNNKWLACQSMD---------NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564 (1019)
Q Consensus 498 ----~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D---------g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fs 564 (1019)
.+...........+....|+++|..|++++.+ +.|.+|..-. ....+++-.. ..|++++|-
T Consensus 244 MR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G----~i~gtlkvpg--~~It~lsWE 317 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG----HIVGTLKVPG--SCITGLSWE 317 (1189)
T ss_pred hhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccch----hheEEEecCC--ceeeeeEEc
Confidence 11111111222557788999999999998764 3566665433 2234444332 457778886
Q ss_pred CCCCEEEEE
Q psy307 565 PDMSYLISG 573 (1019)
Q Consensus 565 pdg~~Lasg 573 (1019)
..|-.++.+
T Consensus 318 g~gLriA~A 326 (1189)
T KOG2041|consen 318 GTGLRIAIA 326 (1189)
T ss_pred CCceEEEEE
Confidence 666544433
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00017 Score=78.36 Aligned_cols=251 Identities=11% Similarity=0.129 Sum_probs=157.2
Q ss_pred CCeEEEEecCCCcEEE--EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC---CCcEEEEEccCC-CeEEE
Q psy307 357 DCRVKLWEVYKERRCV--RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM---DCRVKLWEVYKE-HRCVR 430 (1019)
Q Consensus 357 Dg~I~IWdl~~~~~~~--~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~---Dg~I~IWDl~~~-~~~~~ 430 (1019)
+.-|.+|++......+ ...-.+....+-++|+|++ +.|+++.. +|.|..|.+... +++..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~--------------~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ 80 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQ--------------RHLYVVNEPGEEGGVAAYRIDPDDGRLTF 80 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCC--------------CEEEEEEecCCcCcEEEEEEcCCCCeEEE
Confidence 5679999986332222 2234566778889999888 46666544 477888888543 33322
Q ss_pred E--EccccccEeEEEEecCCCEEEEEEcC-CeEEEEECCC-Cce---EEEEecCCc----------eEEEEEecCCCeee
Q psy307 431 T--YYGHRQAVRDICFNNTGTNFISAGYD-RYLKLWDTES-GEC---ISRFTSRKV----------AYCVKFHPDEDKQH 493 (1019)
Q Consensus 431 ~--l~~H~~~V~sl~fspdg~~l~S~s~D-g~I~lWDl~t-~~~---i~~~~~~~~----------v~~v~~~p~~~~~~ 493 (1019)
. ......+-+.++++++|++++++.+. |.|.++-++. |.+ +..+.+... +.+..+.|++...+
T Consensus 81 ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~ 160 (346)
T COG2706 81 LNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLV 160 (346)
T ss_pred eeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEE
Confidence 1 11122333778999999999988875 7899998865 432 233333333 77889999987665
Q ss_pred e-ccCCCceeeeC--------------CCCCcccEEEEcCCCCEEEEEe-cCCeEEEEEccCc-ccccceeEEec----c
Q psy307 494 L-DIPVDMKYIAD--------------PTMHSMPAVTSSPNNKWLACQS-MDNKILIFSALNR-FKLNRKKTFEG----H 552 (1019)
Q Consensus 494 ~-~~~~~~~~i~~--------------~~~~~i~~v~~spdg~~Lasgs-~Dg~I~iwd~~~~-~~~~~~~~l~g----h 552 (1019)
. +...+...+.. ........+.|+|++++..+.+ .+++|.+|..... ..+..++.+.. .
T Consensus 161 v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF 240 (346)
T COG2706 161 VPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF 240 (346)
T ss_pred EeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc
Confidence 4 22222222211 2334456899999999987655 5899999998763 23333333211 1
Q ss_pred ccccceEEEEEcCCCCEEEEEeC-CCeEEEEeCCC--Cce--eeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcE
Q psy307 553 MVAGYACSLDFSPDMSYLISGDA-DGKCYIWDWKT--TKL--FKKWKAHDGVCISTLWHPHEPSKVVTAGWDAAT 622 (1019)
Q Consensus 553 ~~~~~V~~v~fspdg~~Lasgs~-DG~I~IWDl~t--~~~--l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I 622 (1019)
....+...|.++|||++|.++.. ...|.++.+.. +++ +.....+......+.++|.+ .+|++++.++.-
T Consensus 241 ~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g-~~Liaa~q~sd~ 314 (346)
T COG2706 241 TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSG-RFLIAANQKSDN 314 (346)
T ss_pred CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCC-CEEEEEccCCCc
Confidence 22245678999999999988753 23677777653 332 22223344446889999988 567766665543
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.7e-06 Score=89.25 Aligned_cols=267 Identities=18% Similarity=0.217 Sum_probs=161.8
Q ss_pred CCCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCC------------CCeEEEEEcCCCC-cEEEEeeCCC
Q psy307 292 DPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHT------------KGISAIRWFPKSA-HLLLSCSMDC 358 (1019)
Q Consensus 292 ~~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~------------~~V~~i~fspd~g-~lLaSgs~Dg 358 (1019)
..+++.|.++++|...|.|.++.......|- .+....+++|. ..|..|.|..+++ ..++..+.|.
T Consensus 32 Vefd~tg~YlatGDkgGRVvlfer~~s~~ce--ykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdk 109 (460)
T COG5170 32 VEFDETGLYLATGDKGGRVVLFEREKSYGCE--YKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDK 109 (460)
T ss_pred EEeccccceEeecCCCceEEEeecccccccc--hhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCc
Confidence 3578999999999999999999776655442 24455677775 4688999987644 4566778899
Q ss_pred eEEEEecCCCc-E-----------------E--------EEEecccCccEeEE----EEcCCCCceeEEEeecCCCCcEE
Q psy307 359 RVKLWEVYKER-R-----------------C--------VRTYYGHRQAVRDI----CFNNTGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 359 ~I~IWdl~~~~-~-----------------~--------~~~~~gh~~~V~~i----~fspdg~~~vs~i~~~p~~~~~L 408 (1019)
+|++|.++... + + +..+..|.. +.+. ..+.-.++.+.++++..+. -.
T Consensus 110 tiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~-iiaa~p~rvyaNaH~yhiNSiS~NsD~--et 186 (460)
T COG5170 110 TIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDE-IIAAKPCRVYANAHPYHINSISFNSDK--ET 186 (460)
T ss_pred eeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccce-EEEeccceeccccceeEeeeeeecCch--he
Confidence 99999985431 0 0 001111111 1110 0112222333444444332 23
Q ss_pred EEEeCCCcEEEEEccCCCeEEE--EEccc-----cccEeEEEEecCCC-EEEEEEcCCeEEEEECCCCceE----EEEec
Q psy307 409 LSCSMDCRVKLWEVYKEHRCVR--TYYGH-----RQAVRDICFNNTGT-NFISAGYDRYLKLWDTESGECI----SRFTS 476 (1019)
Q Consensus 409 ~sgs~Dg~I~IWDl~~~~~~~~--~l~~H-----~~~V~sl~fspdg~-~l~S~s~Dg~I~lWDl~t~~~i----~~~~~ 476 (1019)
+..+.|=.|.+|++.....+.. -++.| ...|++..|+|... .|.-.+..|.|++-|++....- ..+..
T Consensus 187 ~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~ 266 (460)
T COG5170 187 LLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL 266 (460)
T ss_pred eeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh
Confidence 3445677899999865444333 23344 34588889999654 5667778899999999854311 01110
Q ss_pred CCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEecccc--
Q psy307 477 RKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMV-- 554 (1019)
Q Consensus 477 ~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~-- 554 (1019)
.+.............+|..+.|+++|+++++-+ -.+|+|||.+... .++++..-|..
T Consensus 267 ------------------~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k--~pikTi~~h~~l~ 325 (460)
T COG5170 267 ------------------TIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAK--NPIKTIPMHCDLM 325 (460)
T ss_pred ------------------ccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEeccccc--CCceeechHHHHH
Confidence 000011111222346788899999999998765 4699999998643 33455433320
Q ss_pred --------ccc---eEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy307 555 --------AGY---ACSLDFSPDMSYLISGDADGKCYIWDW 584 (1019)
Q Consensus 555 --------~~~---V~~v~fspdg~~Lasgs~DG~I~IWDl 584 (1019)
... --.+.||.|.+.+++|+.....-|+-.
T Consensus 326 ~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 326 DELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 011 135788989999999998887777754
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.2e-05 Score=91.63 Aligned_cols=208 Identities=11% Similarity=0.062 Sum_probs=117.7
Q ss_pred CeEEEEEcCCCCcEEEEeeC---CCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC
Q psy307 337 GISAIRWFPKSAHLLLSCSM---DCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM 413 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~---Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~ 413 (1019)
.+...+|+|++..+++..+. +..|.++|+.++ +.. .+....+.+....|+|||. .++++.+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg-~~~-~lt~~~g~~~~~~~SPDG~-------------~la~~~~~ 253 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG-KKE-KIASSQGMLVVSDVSKDGS-------------KLLLTMAP 253 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC-cEE-EEecCCCcEEeeEECCCCC-------------EEEEEEcc
Confidence 67789999985544554332 456888888443 222 2222444555677888875 44555544
Q ss_pred C--CcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcC-C--eEEEEECCCCceEEEEecCCceEEEEEecC
Q psy307 414 D--CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD-R--YLKLWDTESGECISRFTSRKVAYCVKFHPD 488 (1019)
Q Consensus 414 D--g~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~D-g--~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~ 488 (1019)
+ ..|.++|+. ++. ...+..+.+......|+|||+.|+..+.. + .|.+.|+.+++..+.....
T Consensus 254 ~g~~~Iy~~dl~-~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g----------- 320 (419)
T PRK04043 254 KGQPDIYLYDTN-TKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG----------- 320 (419)
T ss_pred CCCcEEEEEECC-CCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-----------
Confidence 4 456666763 333 33344444333455899999987766642 2 5777787766542211110
Q ss_pred CCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC---------CeEEEEEccCcccccceeEEeccccccceE
Q psy307 489 EDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD---------NKILIFSALNRFKLNRKKTFEGHMVAGYAC 559 (1019)
Q Consensus 489 ~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D---------g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~ 559 (1019)
.. ...|+|+|++|+..+.. ..|.+.|+.++.. ..+... +...
T Consensus 321 --------------------~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~----~~LT~~---~~~~ 371 (419)
T PRK04043 321 --------------------KN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI----RRLTAN---GVNQ 371 (419)
T ss_pred --------------------Cc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe----EECCCC---CCcC
Confidence 00 12678888887766543 3678888876532 222222 1123
Q ss_pred EEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeeeeeccCCCEEE
Q psy307 560 SLDFSPDMSYLISGDADG---KCYIWDWKTTKLFKKWKAHDGVCIS 602 (1019)
Q Consensus 560 ~v~fspdg~~Lasgs~DG---~I~IWDl~t~~~l~~l~~h~~~V~s 602 (1019)
...|+|||+.|+..+.++ .|.+.++... ....+....+.+..
T Consensus 372 ~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~-~~~~l~~~~g~~~~ 416 (419)
T PRK04043 372 FPRFSSDGGSIMFIKYLGNQSALGIIRLNYN-KSFLFPLKVGKIQS 416 (419)
T ss_pred CeEECCCCCEEEEEEccCCcEEEEEEecCCC-eeEEeecCCCccCC
Confidence 578999999877655432 4667776443 33334333344433
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-06 Score=102.26 Aligned_cols=186 Identities=17% Similarity=0.242 Sum_probs=136.5
Q ss_pred CCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC
Q psy307 347 SAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH 426 (1019)
Q Consensus 347 ~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~ 426 (1019)
+++.++.|+....+...|+ ...+..+...-..+.|.-++.+ +.++++|...|+|.+-|. +.-
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl-~~~~e~r~~~v~a~~v~imR~N----------------nr~lf~G~t~G~V~LrD~-~s~ 207 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDL-NTEKETRTTNVSASGVTIMRYN----------------NRNLFCGDTRGTVFLRDP-NSF 207 (1118)
T ss_pred CCcceeecchhhheeeeec-ccceeeeeeeccCCceEEEEec----------------CcEEEeecccceEEeecC-CcC
Confidence 3556777888888888888 3344444444334345555433 268999999999999999 788
Q ss_pred eEEEEEccccccEeEEEEecCCCEEEEEEc---------CCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccC
Q psy307 427 RCVRTYYGHRQAVRDICFNNTGTNFISAGY---------DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIP 497 (1019)
Q Consensus 427 ~~~~~l~~H~~~V~sl~fspdg~~l~S~s~---------Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~ 497 (1019)
+.++++..|++.|.++.. .|+.|++||. |..|+|||++..+.+.-+..+..+.-+.|+|.-
T Consensus 208 ~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl-------- 277 (1118)
T KOG1275|consen 208 ETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSL-------- 277 (1118)
T ss_pred ceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccc--------
Confidence 899999999999986554 7899999986 566899999988777666655555555555542
Q ss_pred CCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC
Q psy307 498 VDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG 577 (1019)
Q Consensus 498 ~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG 577 (1019)
...+++.+..|+..+-|..+... .....+.-+..+..+..+++|++|+.++.|..+|
T Consensus 278 ----------------------~t~~~V~S~sGq~q~vd~~~lsN-P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g 334 (1118)
T KOG1275|consen 278 ----------------------TTRLAVTSQSGQFQFVDTATLSN-PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEG 334 (1118)
T ss_pred ----------------------cceEEEEecccceeeccccccCC-CccceeEEccCCCcceeEEecCCCceEEEecccC
Confidence 24677888889999988543211 1223344445556699999999999999999999
Q ss_pred eEEEEe
Q psy307 578 KCYIWD 583 (1019)
Q Consensus 578 ~I~IWD 583 (1019)
.|.+|-
T Consensus 335 ~v~~wa 340 (1118)
T KOG1275|consen 335 HVNLWA 340 (1118)
T ss_pred cEeeec
Confidence 999997
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-05 Score=82.89 Aligned_cols=173 Identities=10% Similarity=0.026 Sum_probs=117.7
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecC-CCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT-GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVK 484 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspd-g~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~ 484 (1019)
.+|+.|+..|...+|...+..........|...|.-+.=..+ ...+..++.|.++++.++..+........
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~-------- 156 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN-------- 156 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec--------
Confidence 589999999999999996666666666666655433221112 22367788899999988765432111110
Q ss_pred EecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEc
Q psy307 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564 (1019)
Q Consensus 485 ~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fs 564 (1019)
..-.+.++.++++++++++.+....|-.|.+.+...... ......+. ..--+..|+
T Consensus 157 ----------------------~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~-~~~~a~t~-D~gF~~S~s 212 (344)
T KOG4532|consen 157 ----------------------QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIE-NIYEAPTS-DHGFYNSFS 212 (344)
T ss_pred ----------------------cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceee-eeEecccC-CCceeeeec
Confidence 002256788999999999999999999999875432222 22222221 223467899
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceee-----eeeccCCCEEEEEEcCCCC
Q psy307 565 PDMSYLISGDADGKCYIWDWKTTKLFK-----KWKAHDGVCISTLWHPHEP 610 (1019)
Q Consensus 565 pdg~~Lasgs~DG~I~IWDl~t~~~l~-----~l~~h~~~V~sl~~sp~~~ 610 (1019)
.....+|++..||++.|||++.-.... +-..|.|.+..+.|++-|.
T Consensus 213 ~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 213 ENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred cCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 999999999999999999998643322 2245889999999998653
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.1e-05 Score=80.80 Aligned_cols=243 Identities=15% Similarity=0.229 Sum_probs=131.2
Q ss_pred CCCCCeeeeCCCCCceeeecCCCC-----CCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPP-----DRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER 369 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~-----~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~ 369 (1019)
.++|+.++.. +|..|-+++.... .+|.+|+.+- -.=.-++|||| +.+||.+...|+|+++|+..
T Consensus 6 ~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~-------PQWRkl~WSpD-~tlLa~a~S~G~i~vfdl~g-- 74 (282)
T PF15492_consen 6 SSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPN-------PQWRKLAWSPD-CTLLAYAESTGTIRVFDLMG-- 74 (282)
T ss_pred cCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCC-------chheEEEECCC-CcEEEEEcCCCeEEEEeccc--
Confidence 4677766655 6777777755432 1233333222 23346999996 88999999999999999843
Q ss_pred EEEEEecccCccEeEEEEcCCCCceeEEEeecCCC-----CcEEEEEeCCCcEEEEEccC----CCeEEEEE---ccccc
Q psy307 370 RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKS-----AHLLLSCSMDCRVKLWEVYK----EHRCVRTY---YGHRQ 437 (1019)
Q Consensus 370 ~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~-----~~~L~sgs~Dg~I~IWDl~~----~~~~~~~l---~~H~~ 437 (1019)
..+..+..-.. +..+-...|.++.|.+.. ...|++-..+|.++-|-+.. ..+....+ ..+..
T Consensus 75 ~~lf~I~p~~~------~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~ 148 (282)
T PF15492_consen 75 SELFVIPPAMS------FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPH 148 (282)
T ss_pred ceeEEcCcccc------cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCC
Confidence 22333332111 111222223333332221 24677777888888777632 22233332 23578
Q ss_pred cEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEc
Q psy307 438 AVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSS 517 (1019)
Q Consensus 438 ~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~s 517 (1019)
.|.++.|+|..+.|+.||.... +++. .+ .....+.+-.. +.-+
T Consensus 149 Gi~~~vy~p~h~LLlVgG~~~~------~~~~--s~-a~~~GLtaWRi----------------------------L~~~ 191 (282)
T PF15492_consen 149 GINSAVYHPKHRLLLVGGCEQN------QDGM--SK-ASSCGLTAWRI----------------------------LSDS 191 (282)
T ss_pred ceeEEEEcCCCCEEEEeccCCC------CCcc--cc-ccccCceEEEE----------------------------cCCC
Confidence 9999999999998887765322 0000 00 00000000000 0001
Q ss_pred CCCCEEEEEecCCe------EEEEEccCcccccceeEEec-cccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q psy307 518 PNNKWLACQSMDNK------ILIFSALNRFKLNRKKTFEG-HMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLF 590 (1019)
Q Consensus 518 pdg~~Lasgs~Dg~------I~iwd~~~~~~~~~~~~l~g-h~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l 590 (1019)
|..+.+ +...|+. -.+|.+-+ .+.+.. ......|..|..||||+.||+...+|.|.+|++.+-++.
T Consensus 192 Pyyk~v-~~~~~~~~~~~~~~~~~~~~~------~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 192 PYYKQV-TSSEDDITASSKRRGLLRIPS------FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred CcEEEc-cccCccccccccccceeeccc------eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 111111 1111111 11222111 111111 112256889999999999999999999999999999888
Q ss_pred eeeeccCC
Q psy307 591 KKWKAHDG 598 (1019)
Q Consensus 591 ~~l~~h~~ 598 (1019)
..++.++.
T Consensus 265 ~~W~~~eq 272 (282)
T PF15492_consen 265 RSWKQDEQ 272 (282)
T ss_pred cccchhhC
Confidence 88765543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00017 Score=78.50 Aligned_cols=238 Identities=12% Similarity=0.144 Sum_probs=139.3
Q ss_pred EEEEEcCCCCcEEEEeeCCCe-EEEEecCCCcEEEEEecccCccE--eEEEEcCCCCceeEEEeecCCCCcEEEEEe---
Q psy307 339 SAIRWFPKSAHLLLSCSMDCR-VKLWEVYKERRCVRTYYGHRQAV--RDICFNNTGTNFISAIRWFPKSAHLLLSCS--- 412 (1019)
Q Consensus 339 ~~i~fspd~g~lLaSgs~Dg~-I~IWdl~~~~~~~~~~~gh~~~V--~~i~fspdg~~~vs~i~~~p~~~~~L~sgs--- 412 (1019)
..++.+|..+..++.+-.-|+ ..+||..+ ++....+....+.- -.-+||+|| .+|++.-
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~-g~~~~~~~a~~gRHFyGHg~fs~dG--------------~~LytTEnd~ 72 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRT-GQLLQRLWAPPGRHFYGHGVFSPDG--------------RLLYTTENDY 72 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCC-CceeeEEcCCCCCEEecCEEEcCCC--------------CEEEEecccc
Confidence 346777766677777776665 45677743 33333322211110 123677777 4666653
Q ss_pred --CCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc------------------CCeEEEEECCCCceEE
Q psy307 413 --MDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY------------------DRYLKLWDTESGECIS 472 (1019)
Q Consensus 413 --~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~------------------Dg~I~lWDl~t~~~i~ 472 (1019)
..|.|-|||...+-+.+..+..|.-.-..+.+.|||+.|+.+-. +..+.+.|..+|+.+.
T Consensus 73 ~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~ 152 (305)
T PF07433_consen 73 ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE 152 (305)
T ss_pred CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee
Confidence 45899999997688888899988877788899999988776631 1122233333333333
Q ss_pred EEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC-------eEEEEEccCcccccc
Q psy307 473 RFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN-------KILIFSALNRFKLNR 545 (1019)
Q Consensus 473 ~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg-------~I~iwd~~~~~~~~~ 545 (1019)
.... ....+..++..+++.++|..++..-..| -|.+++.........
T Consensus 153 q~~L--------------------------p~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~ 206 (305)
T PF07433_consen 153 QVEL--------------------------PPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLP 206 (305)
T ss_pred eeec--------------------------CccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceecc
Confidence 2211 0122445667777777776555443332 233333222100000
Q ss_pred eeEEeccccccceEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcE
Q psy307 546 KKTFEGHMVAGYACSLDFSPDMSYLISGD-ADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAAT 622 (1019)
Q Consensus 546 ~~~l~gh~~~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I 622 (1019)
...-......+|+-+|+++++|.++++.+ ..|.+.+||..+++.+......+ +..++-.+++ +++|.|. |.+
T Consensus 207 ~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D--~cGva~~~~~--f~~ssG~-G~~ 279 (305)
T PF07433_consen 207 APEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD--ACGVAPTDDG--FLVSSGQ-GQL 279 (305)
T ss_pred CChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc--eeeeeecCCc--eEEeCCC-ccE
Confidence 00000011237899999999998876555 56799999999999988776544 5667666654 5666554 444
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.2e-05 Score=86.62 Aligned_cols=273 Identities=14% Similarity=0.119 Sum_probs=152.6
Q ss_pred CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCC-CCc-EEEEE
Q psy307 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPK-SAH-LLLSC 411 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~-~~~-~L~sg 411 (1019)
-.-++..++|||. |.+|++... ..|.+|.-....++.+.. ...|..+.|+|.+.++++-.. -|. ++. -+.--
T Consensus 31 ~~~p~~~~~~SP~-G~~l~~~~~-~~V~~~~g~~~~~l~~~~---~~~V~~~~fSP~~kYL~tw~~-~pi~~pe~e~sp~ 104 (561)
T COG5354 31 ENWPVAYVSESPL-GTYLFSEHA-AGVECWGGPSKAKLVRFR---HPDVKYLDFSPNEKYLVTWSR-EPIIEPEIEISPF 104 (561)
T ss_pred cCcchhheeecCc-chheehhhc-cceEEccccchhheeeee---cCCceecccCcccceeeeecc-CCccChhhccCCc
Confidence 4558899999996 778877654 458899875555444433 256899999999965433211 000 000 01111
Q ss_pred eCCCcEEEEEccCCCeEEEEEcccccc--Ee-EEEEecCCCEEEEEEcCCeEEEEE------------------------
Q psy307 412 SMDCRVKLWEVYKEHRCVRTYYGHRQA--VR-DICFNNTGTNFISAGYDRYLKLWD------------------------ 464 (1019)
Q Consensus 412 s~Dg~I~IWDl~~~~~~~~~l~~H~~~--V~-sl~fspdg~~l~S~s~Dg~I~lWD------------------------ 464 (1019)
..+..+.+||+ .++..+..+.+...+ .+ -+.|+-+..+++-. ....+.|++
T Consensus 105 ~~~n~~~vwd~-~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsis 182 (561)
T COG5354 105 TSKNNVFVWDI-ASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSIS 182 (561)
T ss_pred cccCceeEEec-cCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEEec
Confidence 22336999999 666666666554433 33 34555444433211 112233333
Q ss_pred --------------------------CCCCceEEEEec-CCceEEEEEecCCCeeeec---------------------c
Q psy307 465 --------------------------TESGECISRFTS-RKVAYCVKFHPDEDKQHLD---------------------I 496 (1019)
Q Consensus 465 --------------------------l~t~~~i~~~~~-~~~v~~v~~~p~~~~~~~~---------------------~ 496 (1019)
+..+..+.+... .-.-..+.|++.+..+++. +
T Consensus 183 P~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~ 262 (561)
T COG5354 183 PEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRI 262 (561)
T ss_pred CCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEee
Confidence 222222211110 0111234555555544331 1
Q ss_pred CCCceeeeCCCCCcccEEEEcCCCCEEEEEe--cCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe
Q psy307 497 PVDMKYIADPTMHSMPAVTSSPNNKWLACQS--MDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD 574 (1019)
Q Consensus 497 ~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs--~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs 574 (1019)
......+.....++|..++|.|.++.+++.+ ++..+.++|++.. ..+.... ..-..+.|||.+++++.++
T Consensus 263 ~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N------l~~~~Pe--~~rNT~~fsp~~r~il~ag 334 (561)
T COG5354 263 TERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN------LRFYFPE--QKRNTIFFSPHERYILFAG 334 (561)
T ss_pred cccccceeccccccceeeeecccCCceeEEecccccceeecccccc------eEEecCC--cccccccccCcccEEEEec
Confidence 1000111113356788999999988876654 7789999999864 1122222 3345688999999999876
Q ss_pred CC---CeEEEEeCCCCceee-eeeccCCCEEEEEEcCCCCcEEEEEe------CCCcEEEE
Q psy307 575 AD---GKCYIWDWKTTKLFK-KWKAHDGVCISTLWHPHEPSKVVTAG------WDAATAKV 625 (1019)
Q Consensus 575 ~D---G~I~IWDl~t~~~l~-~l~~h~~~V~sl~~sp~~~~~l~s~s------~Dg~I~iw 625 (1019)
-| |.+-|||......+. .+.+.. ..-+.|+|++. ++.+.- -|..|.+|
T Consensus 335 F~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~q-F~~~~~ts~k~~~Dn~i~l~ 392 (561)
T COG5354 335 FDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQ-FYDTDTTSEKLRVDNSIKLW 392 (561)
T ss_pred CCccccceEEeccCCceEEEEEeecCC--ceEeeccCCce-EEEecCCCcccccCcceEEE
Confidence 54 689999987665443 665543 45677999984 544433 35556555
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-06 Score=93.12 Aligned_cols=175 Identities=14% Similarity=0.149 Sum_probs=124.5
Q ss_pred EeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCC-----ceEE
Q psy307 398 IRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESG-----ECIS 472 (1019)
Q Consensus 398 i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~-----~~i~ 472 (1019)
|+|+-....+-++.+.+..|-+-|+.++. .+.+ ...+.|.++.|...++.++.|+..|.|...|++.+ .+..
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~--~qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGH--QQSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeeccc--cccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 35544333344667777778887773332 1222 25678999999988999999999999999999865 2223
Q ss_pred EEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC-CCCEEEEEecCCeEEEEEccCcccccceeEEec
Q psy307 473 RFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP-NNKWLACQSMDNKILIFSALNRFKLNRKKTFEG 551 (1019)
Q Consensus 473 ~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~g 551 (1019)
.+-+ ..+++++..-. ++++|++.+++|+|.+||.+-...-..+..+.|
T Consensus 294 rlyh-------------------------------~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeG 342 (425)
T KOG2695|consen 294 RLYH-------------------------------DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEG 342 (425)
T ss_pred EEEc-------------------------------CcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeec
Confidence 3322 23455554444 678999999999999999986544345788999
Q ss_pred cccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCC----CEEEEEEc
Q psy307 552 HMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDG----VCISTLWH 606 (1019)
Q Consensus 552 h~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~----~V~sl~~s 606 (1019)
|.+...-.-+-..+....+++++.|...+||.+++|.++.+++.... .+.++++.
T Consensus 343 HvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 343 HVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 97655555556677777899999999999999999999998864332 44555554
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0013 Score=74.08 Aligned_cols=74 Identities=20% Similarity=0.220 Sum_probs=58.0
Q ss_pred EEEEcCCCCEEEEEe----------cCCeEEEEEccCcccccceeEEe-ccccccceEEEEEcCCCC-EEEEEe-CCCeE
Q psy307 513 AVTSSPNNKWLACQS----------MDNKILIFSALNRFKLNRKKTFE-GHMVAGYACSLDFSPDMS-YLISGD-ADGKC 579 (1019)
Q Consensus 513 ~v~~spdg~~Lasgs----------~Dg~I~iwd~~~~~~~~~~~~l~-gh~~~~~V~~v~fspdg~-~Lasgs-~DG~I 579 (1019)
.++++|+++.+++.. ..+.|.++|..+.... ..+. + ..+..++++|||+ +|++.+ .++.|
T Consensus 252 ~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi---~~i~vG----~~~~~iavS~Dgkp~lyvtn~~s~~V 324 (352)
T TIGR02658 252 QVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL---RKIELG----HEIDSINVSQDAKPLLYALSTGDKTL 324 (352)
T ss_pred eEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE---EEEeCC----CceeeEEECCCCCeEEEEeCCCCCcE
Confidence 499999999888743 2258999999887443 3332 3 3478999999999 777666 57889
Q ss_pred EEEeCCCCceeeee
Q psy307 580 YIWDWKTTKLFKKW 593 (1019)
Q Consensus 580 ~IWDl~t~~~l~~l 593 (1019)
.++|..+++.++++
T Consensus 325 sViD~~t~k~i~~i 338 (352)
T TIGR02658 325 YIFDAETGKELSSV 338 (352)
T ss_pred EEEECcCCeEEeee
Confidence 99999999999988
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.4e-05 Score=89.04 Aligned_cols=317 Identities=13% Similarity=0.146 Sum_probs=186.2
Q ss_pred eeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCC---CCcEEEEeeCCCeEEEEecCCCcEEEEEec
Q psy307 300 SFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPK---SAHLLLSCSMDCRVKLWEVYKERRCVRTYY 376 (1019)
Q Consensus 300 ~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd---~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~ 376 (1019)
.++.+...|.|.+|+.... ..+..+..|.++|..++|-+. +.++|+.-....+|.+|+..++ .....+.
T Consensus 81 liAsaD~~GrIil~d~~~~-------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG-~k~Wk~~ 152 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLA-------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG-EKFWKYD 152 (1062)
T ss_pred eEEeccccCcEEEEEehhh-------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC-ceeeccc
Confidence 4667778889999987632 345667889999999999763 3477888888899999998444 4444444
Q ss_pred ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccC------CCeEEEEEccccc-------------
Q psy307 377 GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYK------EHRCVRTYYGHRQ------------- 437 (1019)
Q Consensus 377 gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~------~~~~~~~l~~H~~------------- 437 (1019)
.......|+.+.| -+...+..-+..|.+.+-+.-. .++..+.-..|..
T Consensus 153 ys~~iLs~f~~DP-------------fd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns 219 (1062)
T KOG1912|consen 153 YSHEILSCFRVDP-------------FDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNS 219 (1062)
T ss_pred cCCcceeeeeeCC-------------CCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhcccc
Confidence 3334444454444 4445555555556665555421 1223333322221
Q ss_pred ------------cEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecC-CceEEEEEecCCCeeee----------
Q psy307 438 ------------AVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSR-KVAYCVKFHPDEDKQHL---------- 494 (1019)
Q Consensus 438 ------------~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~-~~v~~v~~~p~~~~~~~---------- 494 (1019)
....++|+|.-+.++-...-+.+.|+|++-..++...... ..+.-+.+-|++..-.+
T Consensus 220 ~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~lt 299 (1062)
T KOG1912|consen 220 TTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLT 299 (1062)
T ss_pred ccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEE
Confidence 1123456787777777777888889998877776665433 22223333333321111
Q ss_pred --------------------------------------------------------------------------------
Q psy307 495 -------------------------------------------------------------------------------- 494 (1019)
Q Consensus 495 -------------------------------------------------------------------------------- 494 (1019)
T Consensus 300 irvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel 379 (1062)
T KOG1912|consen 300 IRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIEL 379 (1062)
T ss_pred EEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccc
Confidence
Q ss_pred ccCC----Ccee--------eeC--CCC--------CcccEE---EEcCCC-------CEEEEEecCCeEEEEEccCccc
Q psy307 495 DIPV----DMKY--------IAD--PTM--------HSMPAV---TSSPNN-------KWLACQSMDNKILIFSALNRFK 542 (1019)
Q Consensus 495 ~~~~----~~~~--------i~~--~~~--------~~i~~v---~~spdg-------~~Lasgs~Dg~I~iwd~~~~~~ 542 (1019)
..+. .... +.+ .|. ++++.+ .-.|.| .++|.|+..|+|.++|+.++
T Consensus 380 ~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~-- 457 (1062)
T KOG1912|consen 380 VLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN-- 457 (1062)
T ss_pred cccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecch--
Confidence 0000 0000 000 001 111111 112222 46789999999999999887
Q ss_pred ccceeEEeccccccceEEEEEcCCCCEEEEE---------eCCCeEEEEeCCCCce--eeeee-ccCCCEEEEEEcCCCC
Q psy307 543 LNRKKTFEGHMVAGYACSLDFSPDMSYLISG---------DADGKCYIWDWKTTKL--FKKWK-AHDGVCISTLWHPHEP 610 (1019)
Q Consensus 543 ~~~~~~l~gh~~~~~V~~v~fspdg~~Lasg---------s~DG~I~IWDl~t~~~--l~~l~-~h~~~V~sl~~sp~~~ 610 (1019)
...+.+..|. +.|.++.|....+++-.+ +.-+.+.|-|+++|.. ++.++ ....+|..+..+..+
T Consensus 458 -~v~~~fsvht--~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~- 533 (1062)
T KOG1912|consen 458 -AVAASFSVHT--SLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSG- 533 (1062)
T ss_pred -hhhhhhcccc--cceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccC-
Confidence 3346666776 668899997766655333 2234688899999854 33333 344689999988877
Q ss_pred cEEEEEeCCCcEEEEeccceeeeeeeccccCCce
Q psy307 611 SKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQL 644 (1019)
Q Consensus 611 ~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql 644 (1019)
++++..-.|.-+ -.|+.........+....+.+
T Consensus 534 ~yLai~Fr~~pl-Eiwd~kt~~~lr~mS~a~P~i 566 (1062)
T KOG1912|consen 534 RYLAILFRREPL-EIWDLKTLRMLRLMSLALPLI 566 (1062)
T ss_pred ceEEEEecccch-HHHhhccchHHHHHhhcCCcE
Confidence 688888777666 456765555544444444433
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.1e-05 Score=84.07 Aligned_cols=266 Identities=15% Similarity=0.218 Sum_probs=151.9
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeC-----------CCeEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSM-----------DCRVK 361 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~-----------Dg~I~ 361 (1019)
.+++.|.++++- |-.+|.+|......+ ++.+ .|. .|.-+.|||. ..+|+|-|. ...++
T Consensus 217 ~wSP~GTYL~t~-Hk~GI~lWGG~~f~r-------~~RF-~Hp-~Vq~idfSP~-EkYLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 217 RWSPKGTYLVTF-HKQGIALWGGESFDR-------IQRF-YHP-GVQFIDFSPN-EKYLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred EecCCceEEEEE-eccceeeecCccHHH-------HHhc-cCC-CceeeecCCc-cceEEEecCCccccCcccCCCceEE
Confidence 478888877665 667899997664333 2222 233 6889999995 889998652 25799
Q ss_pred EEecCCCcEEEEEecc--cCcc-EeEEEEcCCCCceeEE----------------------------EeecCCCCcEEEE
Q psy307 362 LWEVYKERRCVRTYYG--HRQA-VRDICFNNTGTNFISA----------------------------IRWFPKSAHLLLS 410 (1019)
Q Consensus 362 IWdl~~~~~~~~~~~g--h~~~-V~~i~fspdg~~~vs~----------------------------i~~~p~~~~~L~s 410 (1019)
|||+. ++...+.+.. .... -.-..||.|+.++... ..|+|.+ .+|+-
T Consensus 286 IWDI~-tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~-~llAY 363 (698)
T KOG2314|consen 286 IWDIA-TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTS-NLLAY 363 (698)
T ss_pred EEEcc-ccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCc-ceEEE
Confidence 99994 4455555543 1222 2335677777654321 2355542 22221
Q ss_pred EeCC-----CcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEE----------cCCeEEEEECCCCc-eEEEE
Q psy307 411 CSMD-----CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG----------YDRYLKLWDTESGE-CISRF 474 (1019)
Q Consensus 411 gs~D-----g~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s----------~Dg~I~lWDl~t~~-~i~~~ 474 (1019)
-+.. ..+.+-.+ ...+.+++-.-|.-.=..+.|-.+|.+|+.-- .-..+.|+.++... ++..+
T Consensus 364 wtpe~~~~parvtL~ev-Ps~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v 442 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEV-PSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV 442 (698)
T ss_pred EcccccCCcceEEEEec-CccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee
Confidence 1110 11222222 22233333333333334456777777765321 11234555554433 44555
Q ss_pred ecCCceEEEEEecCCCeeeeccCC----------------CceeeeCCCCCcccEEEEcCCCCEEEEE---ecCCeEEEE
Q psy307 475 TSRKVAYCVKFHPDEDKQHLDIPV----------------DMKYIADPTMHSMPAVTSSPNNKWLACQ---SMDNKILIF 535 (1019)
Q Consensus 475 ~~~~~v~~v~~~p~~~~~~~~~~~----------------~~~~i~~~~~~~i~~v~~spdg~~Lasg---s~Dg~I~iw 535 (1019)
.....+...+|-|.|+..++-... ....+........+.+.|+|.|++++.+ |..|.+..+
T Consensus 443 elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 443 ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEE
Confidence 667778889999999877652111 1111222223446789999999999876 457899999
Q ss_pred EccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC
Q psy307 536 SALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG 577 (1019)
Q Consensus 536 d~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG 577 (1019)
|+..... . ......| ...+.+.|.|.|+|++++++-+
T Consensus 523 D~~~a~~-k-~~~~~eh---~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 523 DTDYADL-K-DTASPEH---FAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred ecchhhh-h-hccCccc---cccccceECCCCCEEEEeeehh
Confidence 9874210 1 1111223 3356789999999999997643
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00015 Score=80.50 Aligned_cols=224 Identities=13% Similarity=0.115 Sum_probs=144.1
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccC----CccceeeeccCCCCeEEEE-EcCCCCcEEEEeeCCCeEEEEecCCC
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFL----PKTQVHTWEGHTKGISAIR-WFPKSAHLLLSCSMDCRVKLWEVYKE 368 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~l----p~~~i~~l~gH~~~V~~i~-fspd~g~lLaSgs~Dg~I~IWdl~~~ 368 (1019)
.+.+|++++.. ..|+|.+++........+ |...-........++.-+. |++-+|.+++..|. |...|.+...+
T Consensus 274 ~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 274 ANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred cCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 45678877665 346777776543221111 1100000111111222222 55656888888775 56666655222
Q ss_pred cEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC-cEEEEEccCCCeEEEEEccccccEeEEEEecC
Q psy307 369 RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC-RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT 447 (1019)
Q Consensus 369 ~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg-~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspd 447 (1019)
..+ --+|.+.|+-..+..++ +-++.|..|| .+-|+|. .+..+..+...-+.|.++..+++
T Consensus 352 -~~i--qv~~~~~VrY~r~~~~~--------------e~~vigt~dgD~l~iyd~--~~~e~kr~e~~lg~I~av~vs~d 412 (668)
T COG4946 352 -YSI--QVGKKGGVRYRRIQVDP--------------EGDVIGTNDGDKLGIYDK--DGGEVKRIEKDLGNIEAVKVSPD 412 (668)
T ss_pred -eeE--EcCCCCceEEEEEccCC--------------cceEEeccCCceEEEEec--CCceEEEeeCCccceEEEEEcCC
Confidence 222 23677889888888777 5688899999 8999997 34455666777789999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEe
Q psy307 448 GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQS 527 (1019)
Q Consensus 448 g~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs 527 (1019)
|+.++.+.....|-+.|+.+|.....-. ....-|+.++|||++++||-+-
T Consensus 413 GK~~vvaNdr~el~vididngnv~~idk------------------------------S~~~lItdf~~~~nsr~iAYaf 462 (668)
T COG4946 413 GKKVVVANDRFELWVIDIDNGNVRLIDK------------------------------SEYGLITDFDWHPNSRWIAYAF 462 (668)
T ss_pred CcEEEEEcCceEEEEEEecCCCeeEecc------------------------------cccceeEEEEEcCCceeEEEec
Confidence 9999998888889999999887532211 2234567788899999999876
Q ss_pred cCC----eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe
Q psy307 528 MDN----KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD 574 (1019)
Q Consensus 528 ~Dg----~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs 574 (1019)
-+| .|++||+.++... .+.+-. ++-.+.+|.|||++|.--+
T Consensus 463 P~gy~tq~Iklydm~~~Kiy-~vTT~t-----a~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 463 PEGYYTQSIKLYDMDGGKIY-DVTTPT-----AYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CcceeeeeEEEEecCCCeEE-EecCCc-----ccccCcccCCCCcEEEEEe
Confidence 665 7899999876322 111212 3344678999999876554
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.8e-05 Score=93.05 Aligned_cols=175 Identities=14% Similarity=0.175 Sum_probs=126.2
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKF 485 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~ 485 (1019)
++|+-|+.+|.|++.+... .+ .+...|+.. ..+|.+++|||.||+|.|-.+-+.+...++..+.++.++++
T Consensus 50 ~~~~~GtH~g~v~~~~~~~--~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial 120 (846)
T KOG2066|consen 50 KFFALGTHRGAVYLTTCQG--NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIAL 120 (846)
T ss_pred ceeeeccccceEEEEecCC--cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEe
Confidence 6899999999999998732 22 333344433 55899999999999999999999998888888888888888
Q ss_pred ecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcC
Q psy307 486 HPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP 565 (1019)
Q Consensus 486 ~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp 565 (1019)
+|+-.. ...+.+++|+.-| +.++.-+= +........|...|+|.++.|
T Consensus 121 ~Pd~~~--------------------------~~sk~fv~GG~ag-lvL~er~w---lgnk~~v~l~~~eG~I~~i~W-- 168 (846)
T KOG2066|consen 121 HPDFSR--------------------------QQSKQFVSGGMAG-LVLSERNW---LGNKDSVVLSEGEGPIHSIKW-- 168 (846)
T ss_pred ccchhh--------------------------hhhhheeecCcce-EEEehhhh---hcCccceeeecCccceEEEEe--
Confidence 887321 1346788999888 77765331 122233345666699999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCC------EEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 566 DMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGV------CISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 566 dg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~------V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.|.++|-++.+| |+|||+.+++.+..++..... ...+.|.+.. .+ ..||..+|.+.
T Consensus 169 ~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~L--VIGW~d~v~i~ 230 (846)
T KOG2066|consen 169 RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RL--VIGWGDSVKIC 230 (846)
T ss_pred cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eE--EEecCCeEEEE
Confidence 688999998888 899999999888877643332 3467788765 23 33455566554
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0003 Score=82.18 Aligned_cols=185 Identities=11% Similarity=0.064 Sum_probs=108.5
Q ss_pred cEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC---CCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE-EEc
Q psy307 381 AVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM---DCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS-AGY 456 (1019)
Q Consensus 381 ~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~---Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S-~s~ 456 (1019)
.+....|+|||. ..++..+. +..|.++|+. +++..... ...+.+....|+|||+.++. .+.
T Consensus 189 ~~~~p~wSpDG~-------------~~i~y~s~~~~~~~Iyv~dl~-tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~ 253 (419)
T PRK04043 189 LNIFPKWANKEQ-------------TAFYYTSYGERKPTLYKYNLY-TGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAP 253 (419)
T ss_pred CeEeEEECCCCC-------------cEEEEEEccCCCCEEEEEECC-CCcEEEEe-cCCCcEEeeEECCCCCEEEEEEcc
Confidence 677788888884 33443332 3568888884 33333322 24455666789999987654 333
Q ss_pred C--CeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC-C--e
Q psy307 457 D--RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD-N--K 531 (1019)
Q Consensus 457 D--g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D-g--~ 531 (1019)
+ ..|.++|+.++.... +.... .......|+|||+.|+..+.. | .
T Consensus 254 ~g~~~Iy~~dl~~g~~~~-LT~~~------------------------------~~d~~p~~SPDG~~I~F~Sdr~g~~~ 302 (419)
T PRK04043 254 KGQPDIYLYDTNTKTLTQ-ITNYP------------------------------GIDVNGNFVEDDKRIVFVSDRLGYPN 302 (419)
T ss_pred CCCcEEEEEECCCCcEEE-cccCC------------------------------CccCccEECCCCCEEEEEECCCCCce
Confidence 3 457777887765332 22111 001123688888877766632 3 6
Q ss_pred EEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC---------CeEEEEeCCCCceeeeeeccCCCEEE
Q psy307 532 ILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD---------GKCYIWDWKTTKLFKKWKAHDGVCIS 602 (1019)
Q Consensus 532 I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D---------G~I~IWDl~t~~~l~~l~~h~~~V~s 602 (1019)
|.+.|+.++... ..+..+. . ...|||||++|+..+.. ..|.+.|+.++.. ..+... +....
T Consensus 303 Iy~~dl~~g~~~--rlt~~g~----~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~ 372 (419)
T PRK04043 303 IFMKKLNSGSVE--QVVFHGK----N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQF 372 (419)
T ss_pred EEEEECCCCCeE--eCccCCC----c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCC
Confidence 778888765321 1111221 1 24899999988766543 3688889988864 334332 23346
Q ss_pred EEEcCCCCcEEEEEeCCCc
Q psy307 603 TLWHPHEPSKVVTAGWDAA 621 (1019)
Q Consensus 603 l~~sp~~~~~l~s~s~Dg~ 621 (1019)
..|+|+|...+++....+.
T Consensus 373 p~~SPDG~~I~f~~~~~~~ 391 (419)
T PRK04043 373 PRFSSDGGSIMFIKYLGNQ 391 (419)
T ss_pred eEECCCCCEEEEEEccCCc
Confidence 8899999655555444333
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00093 Score=85.07 Aligned_cols=270 Identities=16% Similarity=0.170 Sum_probs=158.9
Q ss_pred CCCCeEEEEEcCCCCcEEEEeeC---C---CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 334 HTKGISAIRWFPKSAHLLLSCSM---D---CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs~---D---g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
+...-..|+|-.| |.++|+.+. . ..||||+- .+.+..+-..-.+--.+++|.|.| ++
T Consensus 208 ~dd~~~~ISWRGD-G~yFAVss~~~~~~~~R~iRVy~R--eG~L~stSE~v~gLe~~l~WrPsG--------------~l 270 (928)
T PF04762_consen 208 WDDGRVRISWRGD-GEYFAVSSVEPETGSRRVIRVYSR--EGELQSTSEPVDGLEGALSWRPSG--------------NL 270 (928)
T ss_pred cCCCceEEEECCC-CcEEEEEEEEcCCCceeEEEEECC--CceEEeccccCCCccCCccCCCCC--------------CE
Confidence 4556667899886 788887764 2 57999985 344433333223333456777777 45
Q ss_pred EEEEeC---CCcEEEEEccCCCeEEEE--E--ccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCc--eEEEE--ec
Q psy307 408 LLSCSM---DCRVKLWEVYKEHRCVRT--Y--YGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGE--CISRF--TS 476 (1019)
Q Consensus 408 L~sgs~---Dg~I~IWDl~~~~~~~~~--l--~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~--~i~~~--~~ 476 (1019)
|++... ...|.+|.- .+-.... + ......|..+.|++|+..|+..-.|. |.+|-..... ..+.+ ..
T Consensus 271 IA~~q~~~~~~~VvFfEr--NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~ 347 (928)
T PF04762_consen 271 IASSQRLPDRHDVVFFER--NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS 347 (928)
T ss_pred EEEEEEcCCCcEEEEEec--CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC
Confidence 555543 345666664 2222222 2 23467799999999999998877655 9999876543 12222 22
Q ss_pred CCceEEEEEecCCCeeee-----------------------------------------------ccCCCceeeeCCCCC
Q psy307 477 RKVAYCVKFHPDEDKQHL-----------------------------------------------DIPVDMKYIADPTMH 509 (1019)
Q Consensus 477 ~~~v~~v~~~p~~~~~~~-----------------------------------------------~~~~~~~~i~~~~~~ 509 (1019)
...+..+.|+|....... .+|-++....-.-..
T Consensus 348 ~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~ 427 (928)
T PF04762_consen 348 SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPS 427 (928)
T ss_pred CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCC
Confidence 333444777775432211 111111111112235
Q ss_pred cccEEEEcCCCCEEEEEecCCeEEEEEccCcccc-----cceeEEec--------cccccceEEEEEcCCCCEEEEEeCC
Q psy307 510 SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKL-----NRKKTFEG--------HMVAGYACSLDFSPDMSYLISGDAD 576 (1019)
Q Consensus 510 ~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~-----~~~~~l~g--------h~~~~~V~~v~fspdg~~Lasgs~D 576 (1019)
.|..++|++++..+++-..||.|.+|........ .....+.. ......+..++|..+..+++..+.+
T Consensus 428 ~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (928)
T PF04762_consen 428 PVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSD 507 (928)
T ss_pred CcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecC
Confidence 6789999999988999999999999985432111 00011111 1122457888998888777666654
Q ss_pred ---CeEEEEeCCCCc---eeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEE
Q psy307 577 ---GKCYIWDWKTTK---LFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAK 624 (1019)
Q Consensus 577 ---G~I~IWDl~t~~---~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~i 624 (1019)
+.+.++++.... .+.....-.+.+..+...++.. .++.-..||.+..
T Consensus 508 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~q~~~G~v~~ 560 (928)
T PF04762_consen 508 SNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSG-SLYIQTNDGKVFQ 560 (928)
T ss_pred cccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCc-EEEEEECCCEEEE
Confidence 678888874332 2333333455666666666552 4666667888864
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.5e-05 Score=87.77 Aligned_cols=262 Identities=13% Similarity=0.112 Sum_probs=168.9
Q ss_pred CCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeC-CCeEEEEecCCCcEE-EE
Q psy307 296 YQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSM-DCRVKLWEVYKERRC-VR 373 (1019)
Q Consensus 296 ~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~-Dg~I~IWdl~~~~~~-~~ 373 (1019)
.....+++++.|+.++.|...+... ..-+..+..|-+.|.+++.+-+ +.++.|.+. |..++++|+.+-.-. ..
T Consensus 18 tka~fiiqASlDGh~KFWkKs~isG----vEfVKhFraHL~~I~sl~~S~d-g~L~~Sv~d~Dhs~KvfDvEn~Dminmi 92 (558)
T KOG0882|consen 18 TKAKFIIQASLDGHKKFWKKSRISG----VEFVKHFRAHLGVILSLAVSYD-GWLFRSVEDPDHSVKVFDVENFDMINMI 92 (558)
T ss_pred ehhheEEeeecchhhhhcCCCCccc----eeehhhhHHHHHHHHhhhcccc-ceeEeeccCcccceeEEEeeccchhhhc
Confidence 3456789999999999997765221 2346677889999999998885 888999777 999999998432111 00
Q ss_pred EecccCccEeEEEEcCCCCceeEEEeecCCCC--cEEEEEeCCCcEEEEEccCCCeEE-EEEccccccEeEEEEecCCCE
Q psy307 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSA--HLLLSCSMDCRVKLWEVYKEHRCV-RTYYGHRQAVRDICFNNTGTN 450 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~--~~L~sgs~Dg~I~IWDl~~~~~~~-~~l~~H~~~V~sl~fspdg~~ 450 (1019)
.+..-.+.+. |. .++.+. .+.++.-.+|.|.++|-....... ..-.-|..+|.++.+++.+..
T Consensus 93 KL~~lPg~a~---wv-----------~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 93 KLVDLPGFAE---WV-----------TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred ccccCCCceE---Ee-----------cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 1111111111 11 111111 233444567899999986555333 344559999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC
Q psy307 451 FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN 530 (1019)
Q Consensus 451 l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg 530 (1019)
++|....|.|.-|..... ++. +-..+.|.+...... +..........++.++|+|..+.+-+.|.
T Consensus 159 ~vSiD~~gmVEyWs~e~~-----~qf--Pr~~l~~~~K~eTdL--------y~f~K~Kt~pts~Efsp~g~qistl~~Dr 223 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGP-----FQF--PRTNLNFELKHETDL--------YGFPKAKTEPTSFEFSPDGAQISTLNPDR 223 (558)
T ss_pred eeeccccceeEeecCCCc-----ccC--ccccccccccccchh--------hcccccccCccceEEccccCcccccCccc
Confidence 999999999999987630 000 000111211111111 11111234467899999999999999999
Q ss_pred eEEEEEccCccccccee-----------------------------EEeccccccceEEEEEcCCCCEEEEEeCCCeEEE
Q psy307 531 KILIFSALNRFKLNRKK-----------------------------TFEGHMVAGYACSLDFSPDMSYLISGDADGKCYI 581 (1019)
Q Consensus 531 ~I~iwd~~~~~~~~~~~-----------------------------~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~I 581 (1019)
.|++++..++.....+. .+..| ....-+.+.|...|++|+-|+-=| |++
T Consensus 224 kVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~-~~~~~~~~~fdes~~flly~t~~g-ikv 301 (558)
T KOG0882|consen 224 KVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKH-GSTVGTNAVFDESGNFLLYGTILG-IKV 301 (558)
T ss_pred EEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhh-cCcccceeEEcCCCCEEEeeccee-EEE
Confidence 99999998764332111 01111 122345678999999999998776 899
Q ss_pred EeCCCCceeeee
Q psy307 582 WDWKTTKLFKKW 593 (1019)
Q Consensus 582 WDl~t~~~l~~l 593 (1019)
.++.++...+.+
T Consensus 302 in~~tn~v~ri~ 313 (558)
T KOG0882|consen 302 INLDTNTVVRIL 313 (558)
T ss_pred EEeecCeEEEEe
Confidence 999988776655
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.6e-06 Score=84.80 Aligned_cols=73 Identities=21% Similarity=0.364 Sum_probs=64.6
Q ss_pred eEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecC-CCEEEEEEcCCeEEEEECCC
Q psy307 395 ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT-GTNFISAGYDRYLKLWDTES 467 (1019)
Q Consensus 395 vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspd-g~~l~S~s~Dg~I~lWDl~t 467 (1019)
+++++-+|...+++++|+.||.+-+||.+....+...+..|..+|+.+.|+|. +..|++++.||.+--||..+
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 45566688888999999999999999998887788888999999999999994 56799999999999999764
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.1e-05 Score=86.03 Aligned_cols=153 Identities=15% Similarity=0.146 Sum_probs=104.0
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCce----EEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC
Q psy307 443 CFNNTGTNFISAGYDRYLKLWDTESGEC----ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP 518 (1019)
Q Consensus 443 ~fspdg~~l~S~s~Dg~I~lWDl~t~~~----i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp 518 (1019)
..++.++.++++..+....++++..... +......... +++.+..
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~-------------------------------~ai~~~~ 117 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRP-------------------------------TAISFIR 117 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCc-------------------------------ceeeeee
Confidence 7788888888888888777777654432 1111111111 1223333
Q ss_pred CCCEEEEEecCC---eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee-
Q psy307 519 NNKWLACQSMDN---KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK- 594 (1019)
Q Consensus 519 dg~~Lasgs~Dg---~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~- 594 (1019)
+...+..+..-| .+.+|....+ +....-||. .-++.++|+||+++|++++.|+.|+|-.....-.+..+-
T Consensus 118 ~~~sv~v~dkagD~~~~di~s~~~~----~~~~~lGhv--Sml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl 191 (390)
T KOG3914|consen 118 EDTSVLVADKAGDVYSFDILSADSG----RCEPILGHV--SMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL 191 (390)
T ss_pred ccceEEEEeecCCceeeeeeccccc----Ccchhhhhh--hhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc
Confidence 333444443334 4555554432 234556777 668999999999999999999999999888777777775
Q ss_pred ccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeee
Q psy307 595 AHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAV 635 (1019)
Q Consensus 595 ~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~ 635 (1019)
||..-|..++.-++ +.|+++|.|++++. |+...++.+.
T Consensus 192 GH~eFVS~isl~~~--~~LlS~sGD~tlr~-Wd~~sgk~L~ 229 (390)
T KOG3914|consen 192 GHKEFVSTISLTDN--YLLLSGSGDKTLRL-WDITSGKLLD 229 (390)
T ss_pred ccHhheeeeeeccC--ceeeecCCCCcEEE-EecccCCccc
Confidence 79999999999876 46999999999966 5555555553
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.9e-05 Score=88.03 Aligned_cols=237 Identities=19% Similarity=0.259 Sum_probs=158.7
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCC-CCcEEEEEeCCC
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPK-SAHLLLSCSMDC 415 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~-~~~~L~sgs~Dg 415 (1019)
.-.++.|+|. | +||-|+. ..|.+-|. ..-+.+..+.-|...|+.+.|.|-... .-.++|. ..-+|+++...|
T Consensus 17 N~~A~Dw~~~-G-LiAygsh-slV~VVDs-~s~q~iqsie~h~s~V~~VrWap~~~p---~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 17 NRNAADWSPS-G-LIAYGSH-SLVSVVDS-RSLQLIQSIELHQSAVTSVRWAPAPSP---RDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccCcc-c-eEEEecC-ceEEEEeh-hhhhhhhccccCccceeEEEeccCCCc---hhccCccccceeEEeccccC
Confidence 3667899984 3 5665554 57778887 455678888899999999999986421 1112322 334788888899
Q ss_pred cEEEEEccCCCeEEEEEccccccEeEEEEecC---C-CEEEEEEcCCeEEEEECCCCceEEEEecC-CceEEEEEecCCC
Q psy307 416 RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT---G-TNFISAGYDRYLKLWDTESGECISRFTSR-KVAYCVKFHPDED 490 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspd---g-~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~-~~v~~v~~~p~~~ 490 (1019)
.|.+||. .....+..+..|..+|..++|-+. . ..++.-....+|.+|++.+|+........ ....|+.+.|-..
T Consensus 90 rIil~d~-~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~ 168 (1062)
T KOG1912|consen 90 RIILVDF-VLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDS 168 (1062)
T ss_pred cEEEEEe-hhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCc
Confidence 9999999 566667778889999999999763 3 34677777889999999999988777644 3445577766443
Q ss_pred eeee-------------------ccCCCceeeeCCCCC------------c-------------ccEEEEcCCCCEEEEE
Q psy307 491 KQHL-------------------DIPVDMKYIADPTMH------------S-------------MPAVTSSPNNKWLACQ 526 (1019)
Q Consensus 491 ~~~~-------------------~~~~~~~~i~~~~~~------------~-------------i~~v~~spdg~~Lasg 526 (1019)
..+. +.+.....+...+.. . ...++|+|.-+.++..
T Consensus 169 rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi 248 (1062)
T KOG1912|consen 169 RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI 248 (1062)
T ss_pred ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE
Confidence 2221 112222223222211 0 1135678887777777
Q ss_pred ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCC--EEEEEeCCCeEEEEeCCC
Q psy307 527 SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMS--YLISGDADGKCYIWDWKT 586 (1019)
Q Consensus 527 s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~--~Lasgs~DG~I~IWDl~t 586 (1019)
.....+.++|+.-...+ ....-.. +.+.-+.+-|+++ .|.++-.||.+.||--+.
T Consensus 249 ~~prellv~dle~~~~l---~vvpier--~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 249 TFPRELLVFDLEYECCL---AVVPIER--GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EeccceEEEcchhhcee---EEEEecc--CCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 77889999998755332 2222222 3344566777654 699999999999997654
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.7e-06 Score=62.71 Aligned_cols=38 Identities=34% Similarity=0.756 Sum_probs=35.8
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEe
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWE 364 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWd 364 (1019)
++++++++|.+.|++|+|+|+ +.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence 568899999999999999996 89999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0011 Score=76.88 Aligned_cols=253 Identities=11% Similarity=0.020 Sum_probs=138.6
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR 427 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~ 427 (1019)
+..+++++.+|.|..+|.. +++.+....-.......+.. .+..++.++.+|.+..+|.. +++
T Consensus 65 ~~~v~v~~~~g~v~a~d~~-tG~~~W~~~~~~~~~~~p~v----------------~~~~v~v~~~~g~l~ald~~-tG~ 126 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAE-TGKRLWRVDLDERLSGGVGA----------------DGGLVFVGTEKGEVIALDAE-DGK 126 (377)
T ss_pred CCEEEEECCCCeEEEEEcc-CCcEeeeecCCCCcccceEE----------------cCCEEEEEcCCCEEEEEECC-CCc
Confidence 4578888899999999984 44555444332221111111 12578888899999999984 444
Q ss_pred EEEEEccccccEeE-EEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEE--------------EEEecCCCee
Q psy307 428 CVRTYYGHRQAVRD-ICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYC--------------VKFHPDEDKQ 492 (1019)
Q Consensus 428 ~~~~l~~H~~~V~s-l~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~--------------v~~~p~~~~~ 492 (1019)
.+...... +.+.+ ... .+..++.++.++.|..||.++|+.+..+........ +.-..++...
T Consensus 127 ~~W~~~~~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ 203 (377)
T TIGR03300 127 ELWRAKLS-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLV 203 (377)
T ss_pred EeeeeccC-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEE
Confidence 44433322 12221 112 345677788899999999999998777654322110 0011122222
Q ss_pred eeccCCCceeeeC----CCC-Cc---ccEEEEcC--CCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEE
Q psy307 493 HLDIPVDMKYIAD----PTM-HS---MPAVTSSP--NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562 (1019)
Q Consensus 493 ~~~~~~~~~~i~~----~~~-~~---i~~v~~sp--dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~ 562 (1019)
.++.......... +.. .. +..+.-+| .+..+++++.+|.+..||..++.... ..... . ...+.
T Consensus 204 ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W---~~~~~---~-~~~p~ 276 (377)
T TIGR03300 204 ALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLW---KRDAS---S-YQGPA 276 (377)
T ss_pred EEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEE---eeccC---C-ccCce
Confidence 2222211111100 000 00 00010111 35577888889999999998774332 22111 1 11122
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc-CCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeee
Q psy307 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH-DGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIA 634 (1019)
Q Consensus 563 fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h-~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~ 634 (1019)
.++..|+.++.||.|+.+|..+++.+...... .....+... .+ ..+++++.+|.++.+ +...+++.
T Consensus 277 --~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g-~~l~~~~~~G~l~~~-d~~tG~~~ 343 (377)
T TIGR03300 277 --VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VG-GYLVVGDFEGYLHWL-SREDGSFV 343 (377)
T ss_pred --EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--EC-CEEEEEeCCCEEEEE-ECCCCCEE
Confidence 25667888889999999999999887655321 112222222 23 478889999998665 44444443
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.2e-06 Score=61.12 Aligned_cols=38 Identities=32% Similarity=0.774 Sum_probs=36.4
Q ss_pred eEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEE
Q psy307 427 RCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWD 464 (1019)
Q Consensus 427 ~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWD 464 (1019)
+++.++.+|.+.|++|+|+|++..|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.4e-05 Score=78.83 Aligned_cols=213 Identities=13% Similarity=0.201 Sum_probs=116.6
Q ss_pred eEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec--ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 338 ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY--GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 338 V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~--gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
|+.+.++- ...|+++..++.+..... ....+..... ...++..+++.+. +. -....+.-...-++++..||
T Consensus 39 ~~~~~~v~--~~~lf~~e~~~~~ss~g~-~r~~~~~~~~rt~~i~~~~~~a~~s-ep---~p~~~~s~~~t~V~~~~~dg 111 (319)
T KOG4714|consen 39 LSKVSLSA--EYILFTGETSSQIISLGK-GRGRCISLWERDDGIDPFKVLAKNS-EI---DPNDACTMTDNRVCIGYADG 111 (319)
T ss_pred EEEeechh--hheeecccchhheeeecc-ceEEEechhhcccCcCceeeeeccC-CC---CCcccccccCCceEecCCCc
Confidence 56666665 357888888877776655 2222221111 0112233333211 10 00111112235789999999
Q ss_pred cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeec
Q psy307 416 RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLD 495 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~ 495 (1019)
.+.+.+.+...+.......-...-.+.++...++.+.++. +-.|+.........+...+.
T Consensus 112 ~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~----~g~~n~~d~~~a~~~~p~~t---------------- 171 (319)
T KOG4714|consen 112 SLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGG----CGNWNAQDNFYANTLDPIKT---------------- 171 (319)
T ss_pred eEEEEechHHHhhhhhcccccccccccceeecccEEecCC----cceEeeccceeeeccccccc----------------
Confidence 9999998553333222222222222223444455444432 22333222222221111100
Q ss_pred cCCCceeeeCCCCCcccEEEEcCCC-CEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcC-CCCEEEEE
Q psy307 496 IPVDMKYIADPTMHSMPAVTSSPNN-KWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP-DMSYLISG 573 (1019)
Q Consensus 496 ~~~~~~~i~~~~~~~i~~v~~spdg-~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp-dg~~Lasg 573 (1019)
..........+++++.+|.. +.+++|+.||.+-+||.++.. .....+..|. ..+..+-|+| ++..|.++
T Consensus 172 -----~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~--~p~S~l~ahk--~~i~eV~FHpk~p~~Lft~ 242 (319)
T KOG4714|consen 172 -----LIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA--MPVSLLKAHK--AEIWEVHFHPKNPEHLFTC 242 (319)
T ss_pred -----ccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc--chHHHHHHhh--hhhhheeccCCCchheeEe
Confidence 00001112337778888864 567788899999999999762 4455677777 6789999999 67899999
Q ss_pred eCCCeEEEEeCCC
Q psy307 574 DADGKCYIWDWKT 586 (1019)
Q Consensus 574 s~DG~I~IWDl~t 586 (1019)
+.||.+.-||..+
T Consensus 243 sedGslw~wdas~ 255 (319)
T KOG4714|consen 243 SEDGSLWHWDAST 255 (319)
T ss_pred cCCCcEEEEcCCC
Confidence 9999999999764
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.1e-06 Score=97.41 Aligned_cols=205 Identities=18% Similarity=0.263 Sum_probs=139.8
Q ss_pred EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCC
Q psy307 370 RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT 449 (1019)
Q Consensus 370 ~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~ 449 (1019)
+..+++..|....+|++|+.+. ++|+.|+..|.|+++++ ..+.....+.+|.++|+.+.=+.+|.
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~--------------~hL~vG~~~Geik~~nv-~sG~~e~s~ncH~SavT~vePs~dgs 1156 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGT--------------NHLAVGSHAGEIKIFNV-SSGSMEESVNCHQSAVTLVEPSVDGS 1156 (1516)
T ss_pred ccchhhhccccceeeEEeecCC--------------ceEEeeeccceEEEEEc-cCccccccccccccccccccccCCcc
Confidence 3456678888999999999877 79999999999999999 77778888999999999999999999
Q ss_pred EEEEEEc-CC-eEEEEECCC-CceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE
Q psy307 450 NFISAGY-DR-YLKLWDTES-GECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ 526 (1019)
Q Consensus 450 ~l~S~s~-Dg-~I~lWDl~t-~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg 526 (1019)
.+++.+. .. -..+|++.. +...++|...+ ++.|+.....-+.|
T Consensus 1157 ~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed~----------------------------------~vkFsn~~q~r~~g 1202 (1516)
T KOG1832|consen 1157 TQLTSSSSSSPLSALWDASSTGGPRHSFDEDK----------------------------------AVKFSNSLQFRALG 1202 (1516)
T ss_pred eeeeeccccCchHHHhccccccCccccccccc----------------------------------eeehhhhHHHHHhc
Confidence 8665544 33 477999753 34444443322 23344333344556
Q ss_pred ecCCeEEEEEccCcccccceeEEeccccc-cceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEE
Q psy307 527 SMDNKILIFSALNRFKLNRKKTFEGHMVA-GYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLW 605 (1019)
Q Consensus 527 s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~-~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~ 605 (1019)
+......+||+.+..++... +.+.... -.-+++.|+|+..++. .|| .+||++..+.++.|..-... ..-.|
T Consensus 1203 t~~d~a~~YDvqT~~~l~ty--lt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~F 1274 (1516)
T KOG1832|consen 1203 TEADDALLYDVQTCSPLQTY--LTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGF 1274 (1516)
T ss_pred ccccceEEEecccCcHHHHh--cCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheec-ccccc
Confidence 66678899999987544221 2221100 1125678999988776 566 58999998888877654422 23359
Q ss_pred cCCCCcEEEEEeCCCcEEEEeccceeeeeeecc
Q psy307 606 HPHEPSKVVTAGWDAATAKVQDANIVKIAVEME 638 (1019)
Q Consensus 606 sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~ 638 (1019)
||+|. -++.-+ -+||....+.+...+
T Consensus 1275 HP~g~-eVIINS------EIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1275 HPSGN-EVIINS------EIWDMRTFKLLHSVP 1300 (1516)
T ss_pred cCCCc-eEEeec------hhhhhHHHHHHhcCc
Confidence 99984 555544 247777666554433
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.2e-05 Score=85.82 Aligned_cols=129 Identities=16% Similarity=0.322 Sum_probs=97.6
Q ss_pred CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC----cEEEEEecccCccEeEEEEcC-CCCceeEEEeecCCCCcEE
Q psy307 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE----RRCVRTYYGHRQAVRDICFNN-TGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~----~~~~~~~~gh~~~V~~i~fsp-dg~~~vs~i~~~p~~~~~L 408 (1019)
-++.|.++.|.. .+.++..|+..|.|...|+... +.+...+ .|...|+++.... ++ .+|
T Consensus 251 sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~--------------q~L 314 (425)
T KOG2695|consen 251 SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQ--------------QKL 314 (425)
T ss_pred cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhcccc--------------ceE
Confidence 346788888877 4789999999999999999533 3333333 3777888877665 33 689
Q ss_pred EEEeCCCcEEEEEccCCC--eEEEEEccccccEeEE--EEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCC
Q psy307 409 LSCSMDCRVKLWEVYKEH--RCVRTYYGHRQAVRDI--CFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRK 478 (1019)
Q Consensus 409 ~sgs~Dg~I~IWDl~~~~--~~~~~l~~H~~~V~sl--~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~ 478 (1019)
++.+.+|+|++||++... .-+..+.||...-.-+ ...+....+++++.|...+||.++.|..+.++....
T Consensus 315 maS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 315 MASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred eeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 999999999999995332 3488889986543222 345566678999999999999999999988877543
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0011 Score=78.94 Aligned_cols=211 Identities=12% Similarity=0.182 Sum_probs=135.9
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCcc-EeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQA-VRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~-V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
.|+|+ ++ ++..++.|+.+|.|.+.+ ...+.++.++.+... |..+-.. ++ ..+|++.+.|+
T Consensus 27 ~isc~--~s-~~~~vvigt~~G~V~~Ln--~s~~~~~~fqa~~~siv~~L~~~-~~-------------~~~L~sv~Ed~ 87 (933)
T KOG2114|consen 27 AISCC--SS-STGSVVIGTADGRVVILN--SSFQLIRGFQAYEQSIVQFLYIL-NK-------------QNFLFSVGEDE 87 (933)
T ss_pred ceeEE--cC-CCceEEEeeccccEEEec--ccceeeehheecchhhhhHhhcc-cC-------------ceEEEEEeecC
Confidence 55554 45 477899999999998886 455566778887777 4444322 22 25777776664
Q ss_pred -----cEEEEEccCC-----CeEE--EEEcc-----ccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCC
Q psy307 416 -----RVKLWEVYKE-----HRCV--RTYYG-----HRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRK 478 (1019)
Q Consensus 416 -----~I~IWDl~~~-----~~~~--~~l~~-----H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~ 478 (1019)
.++||++... ..++ ..... ...++.+++.+.+-+.+++|-.+|.|..+.- ...+.-..
T Consensus 88 ~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~G---Di~RDrgs-- 162 (933)
T KOG2114|consen 88 QGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKG---DILRDRGS-- 162 (933)
T ss_pred CCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcC---cchhcccc--
Confidence 5899999532 3344 12222 3567899999999888999999999988742 11110000
Q ss_pred ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccce
Q psy307 479 VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYA 558 (1019)
Q Consensus 479 ~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V 558 (1019)
..........+|+.+++..+++.++....-..|.+|.+.+.. ...+.+..|. ..+
T Consensus 163 ---------------------r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~--p~~~~ld~~G--~~l 217 (933)
T KOG2114|consen 163 ---------------------RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT--PSLKVLDNNG--ISL 217 (933)
T ss_pred ---------------------ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC--cceeeeccCC--ccc
Confidence 112233445778888888888774444556789999998543 2344455554 668
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee-ccC
Q psy307 559 CSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK-AHD 597 (1019)
Q Consensus 559 ~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~-~h~ 597 (1019)
.|.++++....+++++.. .+.+||....++-..+. +|.
T Consensus 218 nCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 218 NCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred eeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecCCCe
Confidence 888888765545555444 59999987655555555 444
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00016 Score=79.10 Aligned_cols=256 Identities=12% Similarity=0.179 Sum_probs=141.4
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
+..+.+|...|..++|+|...-++..++.+.+|+|.|++ ...++..+..| ..+.+++|.-+.. ++
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dle-t~~~vssy~a~-~~~wSC~wDlde~-------------h~ 250 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLE-TSCVVSSYIAY-NQIWSCCWDLDER-------------HV 250 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecc-cceeeeheecc-CCceeeeeccCCc-------------ce
Confidence 446677888999999999766689999999999999994 44566667666 6777777766553 89
Q ss_pred EEEEeCCCcEEEEEccCCCeEEEEEcc--ccccEeEEEEe------cCCCEEEEEEcCCeEEEEECC----CCceEEEEe
Q psy307 408 LLSCSMDCRVKLWEVYKEHRCVRTYYG--HRQAVRDICFN------NTGTNFISAGYDRYLKLWDTE----SGECISRFT 475 (1019)
Q Consensus 408 L~sgs~Dg~I~IWDl~~~~~~~~~l~~--H~~~V~sl~fs------pdg~~l~S~s~Dg~I~lWDl~----t~~~i~~~~ 475 (1019)
|+.|-..|.|.|||++........+.+ ...+|..++.- +.|..++.++.+ +..|.+. ..-++..+.
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele 328 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE 328 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC
Confidence 999999999999999877666555544 23344444432 233334333322 4455542 222233333
Q ss_pred cCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC--eEEEEEccCcccccceeEEeccc
Q psy307 476 SRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN--KILIFSALNRFKLNRKKTFEGHM 553 (1019)
Q Consensus 476 ~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg--~I~iwd~~~~~~~~~~~~l~gh~ 553 (1019)
..+...++++++..+...+..... +. .|..+.+.. -.|+ .-.||..+...--..... -+.
T Consensus 329 ~pG~cismqy~~~snh~l~tyRs~------pn---------~p~~r~il~-~~d~~dG~pVc~~r~~~~Gs~~~k--l~t 390 (463)
T KOG1645|consen 329 PPGICISMQYHGVSNHLLLTYRSN------PN---------FPQSRFILG-RIDFRDGFPVCGKRRTYFGSKQTK--LST 390 (463)
T ss_pred CCcceeeeeecCccceEEEEecCC------CC---------Cccceeeee-eeccccCceeeeecccccCCcccc--ccc
Confidence 334444445544333222211110 00 011111111 1111 112222211100000000 000
Q ss_pred cccceEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEc-CCCCcEEEEEeCCCcEEE
Q psy307 554 VAGYACSLDFSPDMSYLI-SGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWH-PHEPSKVVTAGWDAATAK 624 (1019)
Q Consensus 554 ~~~~V~~v~fspdg~~La-sgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~s-p~~~~~l~s~s~Dg~I~i 624 (1019)
-..+.-.++.++|+ .|+....+.+||..++..++++... .+|.+++.. -+++++|++-..| .+.+
T Consensus 391 ----~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~-~v~I 457 (463)
T KOG1645|consen 391 ----TQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLTDD-RVHI 457 (463)
T ss_pred ----ccceeccccccEEEEecCCcceeEEeccchhheeeecccC-cceeecceeecCCcchhhheecc-eEEE
Confidence 00112234555554 4556678999999999999998754 678888744 3455566665544 4444
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0024 Score=69.61 Aligned_cols=216 Identities=15% Similarity=0.216 Sum_probs=134.8
Q ss_pred eeeccCCCCeEEEEEcCCCCcEEEEe-----eCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEE---Eee
Q psy307 329 HTWEGHTKGISAIRWFPKSAHLLLSC-----SMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISA---IRW 400 (1019)
Q Consensus 329 ~~l~gH~~~V~~i~fspd~g~lLaSg-----s~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~---i~~ 400 (1019)
+.|.|| -+||+| |.+|++. +..|.|-|||+...-+.+..+..|.-.-..+.+.|||..++.+ +.-
T Consensus 50 RHFyGH------g~fs~d-G~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~T 122 (305)
T PF07433_consen 50 RHFYGH------GVFSPD-GRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIET 122 (305)
T ss_pred CEEecC------EEEcCC-CCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCcc
Confidence 467788 679996 6777765 4468999999976777888899888888999999999777655 344
Q ss_pred cCCC-CcEEEEEeCCCcEEEEEccCCCeEEEE--E--ccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEe
Q psy307 401 FPKS-AHLLLSCSMDCRVKLWEVYKEHRCVRT--Y--YGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFT 475 (1019)
Q Consensus 401 ~p~~-~~~L~sgs~Dg~I~IWDl~~~~~~~~~--l--~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~ 475 (1019)
+|+. ...|-..+.+.++.+-|. .++.++.. + .-|...|..+++.++|..++..-+.|--. + .--.+..+.
T Consensus 123 hpd~GR~kLNl~tM~psL~~ld~-~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~--~--~~PLva~~~ 197 (305)
T PF07433_consen 123 HPDSGRAKLNLDTMQPSLVYLDA-RSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPG--D--APPLVALHR 197 (305)
T ss_pred CcccCceecChhhcCCceEEEec-CCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCC--c--cCCeEEEEc
Confidence 5554 234556667777777776 44554444 4 34788999999999987666554443210 0 001111111
Q ss_pred cCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEe-cCCeEEEEEccCcccccceeEEecccc
Q psy307 476 SRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQS-MDNKILIFSALNRFKLNRKKTFEGHMV 554 (1019)
Q Consensus 476 ~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs-~Dg~I~iwd~~~~~~~~~~~~l~gh~~ 554 (1019)
..... ..+..+.. ....-.+.+-+|++++++.++++.| ..|.+.+||..++..+ ....-
T Consensus 198 ~g~~~-----------~~~~~p~~---~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~---~~~~l--- 257 (305)
T PF07433_consen 198 RGGAL-----------RLLPAPEE---QWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL---GSVPL--- 257 (305)
T ss_pred CCCcc-----------eeccCChH---HHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe---ecccc---
Confidence 11111 11111100 1122345677899999998886655 5679999999887322 22211
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCeE
Q psy307 555 AGYACSLDFSPDMSYLISGDADGKC 579 (1019)
Q Consensus 555 ~~~V~~v~fspdg~~Lasgs~DG~I 579 (1019)
.-+|.++-.+++ ++++.+ .|.+
T Consensus 258 -~D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 258 -PDACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred -CceeeeeecCCc-eEEeCC-CccE
Confidence 337778877777 555544 4443
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0032 Score=67.56 Aligned_cols=187 Identities=12% Similarity=0.026 Sum_probs=108.6
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEE-ecCCceEEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRF-TSRKVAYCVK 484 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~-~~~~~v~~v~ 484 (1019)
..+++++.++.+..||. .+++.+..... ...+...- ...+..++.++.|+.|..+|..+|+.+... .......
T Consensus 37 ~~v~~~~~~~~l~~~d~-~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~--- 110 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDA-KTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA--- 110 (238)
T ss_dssp TEEEEEETTSEEEEEET-TTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC---
T ss_pred CEEEEEcCCCEEEEEEC-CCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccc---
Confidence 57788899999999998 55555555543 21111111 224566777888999999999999988764 3211000
Q ss_pred EecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccc--c------
Q psy307 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVA--G------ 556 (1019)
Q Consensus 485 ~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~--~------ 556 (1019)
.........+ .+..++++..++.|..+|+.++..+ ......... .
T Consensus 111 ----------------------~~~~~~~~~~--~~~~~~~~~~~g~l~~~d~~tG~~~---w~~~~~~~~~~~~~~~~~ 163 (238)
T PF13360_consen 111 ----------------------GVRSSSSPAV--DGDRLYVGTSSGKLVALDPKTGKLL---WKYPVGEPRGSSPISSFS 163 (238)
T ss_dssp ----------------------STB--SEEEE--ETTEEEEEETCSEEEEEETTTTEEE---EEEESSTT-SS--EEEET
T ss_pred ----------------------ccccccCceE--ecCEEEEEeccCcEEEEecCCCcEE---EEeecCCCCCCcceeeec
Confidence 0011112222 3778888888999999999988543 222222111 1
Q ss_pred ce-EEEEEcCCCCEEEEEeCCCe-EEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeee
Q psy307 557 YA-CSLDFSPDMSYLISGDADGK-CYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKI 633 (1019)
Q Consensus 557 ~V-~~v~fspdg~~Lasgs~DG~-I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki 633 (1019)
.+ ..+.+. ++ .+..++.+|. +.+ |+.+++.+.... ...+..+ ....+ ..++.++.++.+.. +|...+++
T Consensus 164 ~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~-~~l~~~~~~~~l~~-~d~~tG~~ 234 (238)
T PF13360_consen 164 DINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PSVDG-GTLYVTSSDGRLYA-LDLKTGKV 234 (238)
T ss_dssp TEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EECCC-TEEEEEETTTEEEE-EETTTTEE
T ss_pred ccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCC-ceeeC-CEEEEEeCCCEEEE-EECCCCCE
Confidence 11 223333 45 6777777775 555 999998664333 2233332 23445 36666668888855 45554443
|
... |
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0011 Score=79.15 Aligned_cols=199 Identities=13% Similarity=0.154 Sum_probs=128.7
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEcccccc-EeEEEEecCCCEEEEEEcCC-----eEEEEECCCCceEEEEecCCc
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQA-VRDICFNNTGTNFISAGYDR-----YLKLWDTESGECISRFTSRKV 479 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~-V~sl~fspdg~~l~S~s~Dg-----~I~lWDl~t~~~i~~~~~~~~ 479 (1019)
..++.|+.+|.|.+.+ ..-+.++.+..+... |..+....+...|++.+.|+ .|+|||++.-+ ...+
T Consensus 36 ~~vvigt~~G~V~~Ln--~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~------~n~s 107 (933)
T KOG2114|consen 36 GSVVIGTADGRVVILN--SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD------KNNS 107 (933)
T ss_pred ceEEEeeccccEEEec--ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC------CCCC
Confidence 6899999999988877 455666778887777 55444444446788888775 49999987532 1111
Q ss_pred eEEE---EEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEecccccc
Q psy307 480 AYCV---KFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAG 556 (1019)
Q Consensus 480 v~~v---~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~ 556 (1019)
+.|+ ...|.. ......+++++++|.+-+.+|+|-.+|.|..+.-+-... ...+.--.|....
T Consensus 108 P~c~~~~ri~~~~--------------np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RD-rgsr~~~~~~~~~ 172 (933)
T KOG2114|consen 108 PQCLYEHRIFTIK--------------NPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRD-RGSRQDYSHRGKE 172 (933)
T ss_pred cceeeeeeeeccC--------------CCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhc-cccceeeeccCCC
Confidence 3333 111100 011346678899999999999999999999985431100 1113333455568
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccce
Q psy307 557 YACSLDFSPDMSYLISGDADGKCYIWDWKTTKL-FKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANI 630 (1019)
Q Consensus 557 ~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~-l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i 630 (1019)
+|+.+++-.+++.++-...-..|.+|.+....+ +..+..|...+.|..+++..+ .+++|+.. .+ .+++.+-
T Consensus 173 pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~-qfIca~~e-~l-~fY~sd~ 244 (933)
T KOG2114|consen 173 PITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTY-QFICAGSE-FL-YFYDSDG 244 (933)
T ss_pred CceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCc-cEEEecCc-eE-EEEcCCC
Confidence 899999999998744344445799999874332 555777888899999988654 35555433 33 4555553
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.9e-05 Score=84.63 Aligned_cols=189 Identities=16% Similarity=0.203 Sum_probs=133.7
Q ss_pred cEEEEEeCCCcEEEEEccC--CCeEEEEEccccccEeEEEEecCCCEEEEEEc-CCeEEEEECCCCceEEEEecCCc---
Q psy307 406 HLLLSCSMDCRVKLWEVYK--EHRCVRTYYGHRQAVRDICFNNTGTNFISAGY-DRYLKLWDTESGECISRFTSRKV--- 479 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~--~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~-Dg~I~lWDl~t~~~i~~~~~~~~--- 479 (1019)
+++.+++.||.++.|.-.. .-..+..+..|.+.|.+++.+-+|..+.|.+. |..++++|++.-..+.-+.....
T Consensus 21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~ 100 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF 100 (558)
T ss_pred heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCc
Confidence 6999999999999998643 23455567789999999999999999999887 99999999877654433332222
Q ss_pred ----------eEEEEEec--CCCeeeeccCC---CceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCccccc
Q psy307 480 ----------AYCVKFHP--DEDKQHLDIPV---DMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLN 544 (1019)
Q Consensus 480 ----------v~~v~~~p--~~~~~~~~~~~---~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~ 544 (1019)
+..++.+. ++...+++... ...+....|..+|..+.+.+-+..+++....|.|.-|.....++..
T Consensus 101 a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfP 180 (558)
T KOG0882|consen 101 AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFP 180 (558)
T ss_pred eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCc
Confidence 22222221 22222222222 2334556678889999999999999999999999999987421110
Q ss_pred ce---eE-------EeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee
Q psy307 545 RK---KT-------FEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK 594 (1019)
Q Consensus 545 ~~---~~-------l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~ 594 (1019)
.. .. +.-....+...++.|+|+|..+.+-+.|.+|++++.++|++++.+.
T Consensus 181 r~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 181 RTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred cccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 00 00 1111233567899999999999999999999999999998877664
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0056 Score=71.38 Aligned_cols=246 Identities=10% Similarity=0.049 Sum_probs=133.9
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR 427 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~ 427 (1019)
+..++.++.+|.+..+|. .+++.+................ ...++.++.+|.+..+|. .+++
T Consensus 120 ~~~v~v~~~~g~l~ald~-~tG~~~W~~~~~~~~~ssP~v~----------------~~~v~v~~~~g~l~ald~-~tG~ 181 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNA-EDGEVAWQTKVAGEALSRPVVS----------------DGLVLVHTSNGMLQALNE-SDGA 181 (394)
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCCcccccCCCceecCCEEE----------------CCEEEEECCCCEEEEEEc-cCCC
Confidence 346777888999999998 4445444443221111000110 146777888899999998 4444
Q ss_pred EEEEEcccccc-----EeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCc---------------e-E----E
Q psy307 428 CVRTYYGHRQA-----VRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKV---------------A-Y----C 482 (1019)
Q Consensus 428 ~~~~l~~H~~~-----V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~---------------v-~----~ 482 (1019)
.+..+...... ..+... .+..++.++.++.+..+|..+|+.+........ + . .
T Consensus 182 ~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~v 259 (394)
T PRK11138 182 VKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVV 259 (394)
T ss_pred EeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEE
Confidence 44444321110 011111 123567778899999999999887655432110 0 0 0
Q ss_pred EEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEE
Q psy307 483 VKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562 (1019)
Q Consensus 483 v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~ 562 (1019)
...+.++....++...... ++.........+. ..+..++.++.+|.+..+|..++........+.+.. ..+..
T Consensus 260 y~~~~~g~l~ald~~tG~~-~W~~~~~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~----~~sp~ 332 (394)
T PRK11138 260 YALAYNGNLVALDLRSGQI-VWKREYGSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL----LTAPV 332 (394)
T ss_pred EEEEcCCeEEEEECCCCCE-EEeecCCCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc----ccCCE
Confidence 1112223333333322221 1111111111111 245677788889999999998874432222111111 11122
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEE-EEEcCCCCcEEEEEeCCCcEEEE
Q psy307 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCIS-TLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 563 fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~s-l~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
. .+.+|+.++.||.|++.|..+|+.+...+.....+.+ .... + ..|+.++.||.++.+
T Consensus 333 v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~-~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 333 L--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVA--D-DKLLIQARDGTVYAI 391 (394)
T ss_pred E--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEE--C-CEEEEEeCCceEEEE
Confidence 2 2456788999999999999999998877654333332 2222 3 368888999988665
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.011 Score=64.06 Aligned_cols=190 Identities=14% Similarity=0.159 Sum_probs=113.3
Q ss_pred EEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEe-cCCCEEEEEEcCCeEEEEECCCCceEEEEe
Q psy307 397 AIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN-NTGTNFISAGYDRYLKLWDTESGECISRFT 475 (1019)
Q Consensus 397 ~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fs-pdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~ 475 (1019)
+..|.+..+.++++-...+.|..|+..........+.+ ...+++. ++ ..|+.+..++ +.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEee
Confidence 45667766688888888999999998444333323222 6677787 55 4556565544 4555998886543332
Q ss_pred cCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC--------CeEEEEEccCccccccee
Q psy307 476 SRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD--------NKILIFSALNRFKLNRKK 547 (1019)
Q Consensus 476 ~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D--------g~I~iwd~~~~~~~~~~~ 547 (1019)
... . .......+.+++.|+|++.++.... |.|..++.. +. . ..
T Consensus 78 ~~~---------~----------------~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~--~~ 128 (246)
T PF08450_consen 78 LPD---------G----------------GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-V--TV 128 (246)
T ss_dssp EET---------T----------------CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-E--EE
T ss_pred ccC---------C----------------CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-E--EE
Confidence 200 0 0022345567888888877666543 557777766 21 1 11
Q ss_pred EEeccccccceEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCc--e-----eeeeeccCCCEEEEEEcCCCCcEEEEEeCC
Q psy307 548 TFEGHMVAGYACSLDFSPDMSYLI-SGDADGKCYIWDWKTTK--L-----FKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619 (1019)
Q Consensus 548 ~l~gh~~~~~V~~v~fspdg~~La-sgs~DG~I~IWDl~t~~--~-----l~~l~~h~~~V~sl~~sp~~~~~l~s~s~D 619 (1019)
...+ . ...+.++|+||++.|+ +-+..+.|..+++.... . +..+....+..-.+++..+| .+.++.-..
T Consensus 129 ~~~~-~--~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~ 204 (246)
T PF08450_consen 129 VADG-L--GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGG 204 (246)
T ss_dssp EEEE-E--SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETT
T ss_pred EecC-c--ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCC
Confidence 2222 1 4578999999999776 55667889999985322 1 21222222347889999988 466655566
Q ss_pred CcEEEE
Q psy307 620 AATAKV 625 (1019)
Q Consensus 620 g~I~iw 625 (1019)
+.|.++
T Consensus 205 ~~I~~~ 210 (246)
T PF08450_consen 205 GRIVVF 210 (246)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 777655
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00065 Score=80.39 Aligned_cols=186 Identities=14% Similarity=0.136 Sum_probs=122.9
Q ss_pred CCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEe
Q psy307 296 YQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTY 375 (1019)
Q Consensus 296 ~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~ 375 (1019)
..++.++.|+++|.|.+....+.. .+...|+.. ...|.+++|||.||+|.|-.+.++..+. ++
T Consensus 47 v~~~~~~~GtH~g~v~~~~~~~~~---------~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~~~-~~ 109 (846)
T KOG2066|consen 47 VHDKFFALGTHRGAVYLTTCQGNP---------KTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDEIT-QY 109 (846)
T ss_pred hhcceeeeccccceEEEEecCCcc---------ccccccccc-------ccCCceEEEecCCCcEEEeeccCCccce-eE
Confidence 467889999999999998665432 223334433 2258999999999999999986654432 22
Q ss_pred cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEE-EEEccccccEeEEEEecCCCEEEEE
Q psy307 376 YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCV-RTYYGHRQAVRDICFNNTGTNFISA 454 (1019)
Q Consensus 376 ~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~l~~H~~~V~sl~fspdg~~l~S~ 454 (1019)
....++.+|+++|+- +-...+.+++|+.-| +.++.-.--+... ..+..-.++|.+++| .|++++-+
T Consensus 110 -df~rpiksial~Pd~---------~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWa 176 (846)
T KOG2066|consen 110 -DFKRPIKSIALHPDF---------SRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWA 176 (846)
T ss_pred -ecCCcceeEEeccch---------hhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEe
Confidence 234689999999982 122336899999999 7777542222222 245666799999999 57888888
Q ss_pred EcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEE
Q psy307 455 GYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILI 534 (1019)
Q Consensus 455 s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~i 534 (1019)
+.+| |+++|+.+++.+..+.....- .......+.+.|.++.+.+ .| ...+|+|
T Consensus 177 nd~G-v~vyd~~~~~~l~~i~~p~~~------------------------~R~e~fpphl~W~~~~~LV-IG-W~d~v~i 229 (846)
T KOG2066|consen 177 NDDG-VKVYDTPTRQRLTNIPPPSQS------------------------VRPELFPPHLHWQDEDRLV-IG-WGDSVKI 229 (846)
T ss_pred cCCC-cEEEeccccceeeccCCCCCC------------------------CCcccCCCceEecCCCeEE-Ee-cCCeEEE
Confidence 7666 899999998887766543200 0011223456676665443 33 4557788
Q ss_pred EEcc
Q psy307 535 FSAL 538 (1019)
Q Consensus 535 wd~~ 538 (1019)
..++
T Consensus 230 ~~I~ 233 (846)
T KOG2066|consen 230 CSIK 233 (846)
T ss_pred EEEe
Confidence 7776
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0031 Score=78.03 Aligned_cols=233 Identities=12% Similarity=0.142 Sum_probs=132.6
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
+.|.++.|.-+ +.-++.+..+|.|.+-|..+.. +...-.-..+|.+++|+||+. .++..+.++
T Consensus 69 ~~i~s~~fl~d-~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee--------------~l~liT~~~ 131 (1265)
T KOG1920|consen 69 DEIVSVQFLAD-TNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEE--------------LLALITGRQ 131 (1265)
T ss_pred cceEEEEEecc-cceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCc--------------EEEEEeCCc
Confidence 57889999886 5667778888999998874432 222223456899999999984 444444444
Q ss_pred cEEEEEc----cCC------------------CeEEEEEccc---------------------cccEeEEEEecCCCEEE
Q psy307 416 RVKLWEV----YKE------------------HRCVRTYYGH---------------------RQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 416 ~I~IWDl----~~~------------------~~~~~~l~~H---------------------~~~V~sl~fspdg~~l~ 452 (1019)
++.+-+- -.. ++.-..+.|. .+.=.+|+|--||.+|+
T Consensus 132 tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fA 211 (1265)
T KOG1920|consen 132 TLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFA 211 (1265)
T ss_pred EEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEE
Confidence 4433221 000 0000111110 11123479999999988
Q ss_pred EEE----cC-CeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE-
Q psy307 453 SAG----YD-RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ- 526 (1019)
Q Consensus 453 S~s----~D-g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg- 526 (1019)
+.. .+ +.|++||-+ |..-.+ ..+..+.-.+++|-|.|.++++-
T Consensus 212 Vs~~~~~~~~RkirV~drE-g~Lns~------------------------------se~~~~l~~~LsWkPsgs~iA~iq 260 (1265)
T KOG1920|consen 212 VSFVESETGTRKIRVYDRE-GALNST------------------------------SEPVEGLQHSLSWKPSGSLIAAIQ 260 (1265)
T ss_pred EEEEeccCCceeEEEeccc-chhhcc------------------------------cCcccccccceeecCCCCeEeeee
Confidence 743 24 789999976 432111 11222334567788888888764
Q ss_pred --ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEE---EeCCCeEEEEeCCCCc--eeeeeeccCCC
Q psy307 527 --SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLIS---GDADGKCYIWDWKTTK--LFKKWKAHDGV 599 (1019)
Q Consensus 527 --s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Las---gs~DG~I~IWDl~t~~--~l~~l~~h~~~ 599 (1019)
+.|+.|.+|.-++-..-. ..+.-..+...+..++|+.++..|++ ......|++|-+.+-. +.+.+......
T Consensus 261 ~~~sd~~IvffErNGL~hg~--f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~ 338 (1265)
T KOG1920|consen 261 CKTSDSDIVFFERNGLRHGE--FVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKA 338 (1265)
T ss_pred ecCCCCcEEEEecCCccccc--cccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccccc
Confidence 356689999765432111 11112222344889999999999887 4444559999876532 22233322222
Q ss_pred EEEEEEcCCCCcEEEEEeCCC
Q psy307 600 CISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 600 V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
. +.|+|..+..+.....+|
T Consensus 339 ~--~~W~p~~~~~L~v~~~sG 357 (1265)
T KOG1920|consen 339 L--LMWDPVTEKTLHVLRESG 357 (1265)
T ss_pred c--ccccCCCceeEEEEecCC
Confidence 2 666665444444443334
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0038 Score=66.90 Aligned_cols=197 Identities=13% Similarity=0.089 Sum_probs=113.8
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR 427 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~ 427 (1019)
+..+++++.++.|..||. .+++.+..... ...+.......+ ..++.++.++.|..+|. .+++
T Consensus 36 ~~~v~~~~~~~~l~~~d~-~tG~~~W~~~~-~~~~~~~~~~~~---------------~~v~v~~~~~~l~~~d~-~tG~ 97 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDA-KTGKVLWRFDL-PGPISGAPVVDG---------------GRVYVGTSDGSLYALDA-KTGK 97 (238)
T ss_dssp TTEEEEEETTSEEEEEET-TTSEEEEEEEC-SSCGGSGEEEET---------------TEEEEEETTSEEEEEET-TTSC
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCEEEEeec-cccccceeeecc---------------cccccccceeeeEeccc-CCcc
Confidence 456777789999999998 44555555443 121111111111 46777778889999997 4444
Q ss_pred EEEE-Ecccc---ccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceee
Q psy307 428 CVRT-YYGHR---QAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYI 503 (1019)
Q Consensus 428 ~~~~-l~~H~---~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i 503 (1019)
.+.. ..... ..........++..++.+..++.|..+|+++|+.+.............++
T Consensus 98 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~----------------- 160 (238)
T PF13360_consen 98 VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPIS----------------- 160 (238)
T ss_dssp EEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EE-----------------
T ss_pred eeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCccee-----------------
Confidence 4444 33221 11122233334788899999999999999999998877653211000000
Q ss_pred eCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy307 504 ADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWD 583 (1019)
Q Consensus 504 ~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWD 583 (1019)
....+..-.+..++ .+..++.++.+..+|+.++.... ....+ + +.. ....++..|++++.+|.|..||
T Consensus 161 ---~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w---~~~~~---~-~~~-~~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 161 ---SFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW---SKPIS---G-IYS-LPSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp ---EETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE---EECSS-----ECE-CEECCCTEEEEEETTTEEEEEE
T ss_pred ---eecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE---EecCC---C-ccC-CceeeCCEEEEEeCCCEEEEEE
Confidence 00011111122244 66677777754444888874321 11111 1 211 2456778888888999999999
Q ss_pred CCCCceee
Q psy307 584 WKTTKLFK 591 (1019)
Q Consensus 584 l~t~~~l~ 591 (1019)
+++|+.+-
T Consensus 229 ~~tG~~~W 236 (238)
T PF13360_consen 229 LKTGKVVW 236 (238)
T ss_dssp TTTTEEEE
T ss_pred CCCCCEEe
Confidence 99998764
|
... |
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.6e-05 Score=89.41 Aligned_cols=202 Identities=13% Similarity=0.189 Sum_probs=123.8
Q ss_pred CCeEEEEEcCCCC-cEEEEeeCCCeEEEEecCCCcEE-EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe-
Q psy307 336 KGISAIRWFPKSA-HLLLSCSMDCRVKLWEVYKERRC-VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS- 412 (1019)
Q Consensus 336 ~~V~~i~fspd~g-~lLaSgs~Dg~I~IWdl~~~~~~-~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs- 412 (1019)
..+.|++++-+.. .+++.|..+|.|-+-.+.+.... .....+|....++++|++ -+.+.|++|-
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwne-------------LDtn~LAagld 123 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNE-------------LDTNHLAAGLD 123 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccccccccccccc-------------ccHHHHHhhhh
Confidence 4677888766544 57889999999999988543322 233455555566555554 4446777773
Q ss_pred ---CCCcEEEEEccCCC---eEEEEEc-cccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCce-EEEEecCCceEEEE
Q psy307 413 ---MDCRVKLWEVYKEH---RCVRTYY-GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGEC-ISRFTSRKVAYCVK 484 (1019)
Q Consensus 413 ---~Dg~I~IWDl~~~~---~~~~~l~-~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~-i~~~~~~~~v~~v~ 484 (1019)
.|..+.|||+...- .....+. +......+++|..+.+.+++|...+.+.++|++.... ...+
T Consensus 124 khrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv---------- 193 (783)
T KOG1008|consen 124 KHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV---------- 193 (783)
T ss_pred hhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh----------
Confidence 46789999995431 1111122 2445566889998888899999999999999873211 1111
Q ss_pred EecCCCeeeeccCCCceeeeCCCCCcccEEEEcC-CCCEEEEEecCCeEEEEEc-cCcccccceeEEeccc--cccceEE
Q psy307 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP-NNKWLACQSMDNKILIFSA-LNRFKLNRKKTFEGHM--VAGYACS 560 (1019)
Q Consensus 485 ~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp-dg~~Lasgs~Dg~I~iwd~-~~~~~~~~~~~l~gh~--~~~~V~~ 560 (1019)
....+..+.+.| .+.++++.. ||.|.+||. ++-.. .+..+.... ....+..
T Consensus 194 ----------------------nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnien--pl~~i~~~~N~~~~~l~~ 248 (783)
T KOG1008|consen 194 ----------------------NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIEN--PLQIILRNENKKPKQLFA 248 (783)
T ss_pred ----------------------hhhhcccceecCCCCCceeccc-cCceeeccchhhhcc--HHHHHhhCCCCcccceee
Confidence 112344566677 667776655 999999994 32211 111111111 1123778
Q ss_pred EEEcCCCC-EEEEE-eCCCeEEEEeCC
Q psy307 561 LDFSPDMS-YLISG-DADGKCYIWDWK 585 (1019)
Q Consensus 561 v~fspdg~-~Lasg-s~DG~I~IWDl~ 585 (1019)
++|+|... .+++. -..++|+++|+.
T Consensus 249 ~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 249 LAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred EEeccCCcchhhhhccCcceEEEeccc
Confidence 99999432 34444 445799999985
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.022 Score=60.66 Aligned_cols=232 Identities=10% Similarity=0.119 Sum_probs=119.5
Q ss_pred EEEcCCCCcEEEEeeCCCeEEEEecCCCc-EEEEEec---ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCc
Q psy307 341 IRWFPKSAHLLLSCSMDCRVKLWEVYKER-RCVRTYY---GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCR 416 (1019)
Q Consensus 341 i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~~~~~~~---gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~ 416 (1019)
++.++ +|++||. -.|..|.|-...++- .++.... .....-+.++||||+ .+|+.+...|+
T Consensus 3 ~~~~~-~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~--------------tlLa~a~S~G~ 66 (282)
T PF15492_consen 3 LALSS-DGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDC--------------TLLAYAESTGT 66 (282)
T ss_pred eeecC-CCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCC--------------cEEEEEcCCCe
Confidence 34444 3555554 345666665543321 1112211 222335667777777 68999999999
Q ss_pred EEEEEccCCCeEEEEEcc------ccccEeEEEEecCC------CEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEE
Q psy307 417 VKLWEVYKEHRCVRTYYG------HRQAVRDICFNNTG------TNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVK 484 (1019)
Q Consensus 417 I~IWDl~~~~~~~~~l~~------H~~~V~sl~fspdg------~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~ 484 (1019)
|+++|+ .+..+...-.. -..+|..+.|.+.. ..|+.-.++|.++-+-+..+.. .......++.
T Consensus 67 i~vfdl-~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~----q~y~e~hsfs 141 (282)
T PF15492_consen 67 IRVFDL-MGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTN----QGYQENHSFS 141 (282)
T ss_pred EEEEec-ccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccC----CcceeeEEEE
Confidence 999998 33332222111 23567777775432 1366677777776665422110 0111112222
Q ss_pred EecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCe-EEEEEccCcccccceeEEeccccccceEEEEE
Q psy307 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNK-ILIFSALNRFKLNRKKTFEGHMVAGYACSLDF 563 (1019)
Q Consensus 485 ~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~-I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~f 563 (1019)
|. ....+.|.++.++|..++|++|+.... -..+... ..-+...+.+.+
T Consensus 142 f~------------------~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~-~~GLtaWRiL~~------------ 190 (282)
T PF15492_consen 142 FS------------------SHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKAS-SCGLTAWRILSD------------ 190 (282)
T ss_pred ec------------------ccCCCceeEEEEcCCCCEEEEeccCCCCCcccccc-ccCceEEEEcCC------------
Confidence 22 223467888999999888887764322 0000000 000001111111
Q ss_pred cCCCCEEEEEeCCC------eEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 564 SPDMSYLISGDADG------KCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 564 spdg~~Lasgs~DG------~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
+|..+.+ +...|+ +..+|.+-+.+...........|..+..+|+| .+||+...+|.|.+|-
T Consensus 191 ~Pyyk~v-~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 191 SPYYKQV-TSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWE 257 (282)
T ss_pred CCcEEEc-cccCccccccccccceeeccceeeeeccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEe
Confidence 1111111 111121 23455544433333223345679999999999 6999999999997773
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0036 Score=72.53 Aligned_cols=79 Identities=14% Similarity=0.243 Sum_probs=63.4
Q ss_pred eCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy307 504 ADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWD 583 (1019)
Q Consensus 504 ~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWD 583 (1019)
..+....+.+++++|+...++.|+.||.|.+||...+.. .+.... -.++.++|+|+|.++++|+..|.+.+||
T Consensus 255 sipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t-----~~~ka~--~~P~~iaWHp~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 255 SIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT-----LLAKAE--FIPTLIAWHPDGAIFVVGSEQGELQCFD 327 (545)
T ss_pred EEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee-----eeeeec--ccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence 345667889999999999999999999999999876521 111111 3467899999999999999999999999
Q ss_pred CCCCce
Q psy307 584 WKTTKL 589 (1019)
Q Consensus 584 l~t~~~ 589 (1019)
+.-...
T Consensus 328 ~ALspi 333 (545)
T PF11768_consen 328 MALSPI 333 (545)
T ss_pred eecCcc
Confidence 875543
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0034 Score=72.79 Aligned_cols=75 Identities=12% Similarity=0.099 Sum_probs=59.9
Q ss_pred ccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCccc
Q psy307 433 YGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMP 512 (1019)
Q Consensus 433 ~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~ 512 (1019)
-...+.|.+++++|+...++.|+.||+|.+||...+..... ... -..+
T Consensus 256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~-------------------------------~~P~ 303 (545)
T PF11768_consen 256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAE-------------------------------FIPT 303 (545)
T ss_pred EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eec-------------------------------ccce
Confidence 35678899999999999999999999999999876632211 111 1234
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEccC
Q psy307 513 AVTSSPNNKWLACQSMDNKILIFSALN 539 (1019)
Q Consensus 513 ~v~~spdg~~Lasgs~Dg~I~iwd~~~ 539 (1019)
.++|||+|..+++|+..|.+.+||+.-
T Consensus 304 ~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 304 LIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 678889999999999999999999863
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=97.63 E-value=2.3e-05 Score=89.93 Aligned_cols=192 Identities=19% Similarity=0.293 Sum_probs=128.0
Q ss_pred cEEEEEeCCCcEEEEEccCCCeE-EEEEccccccEeEEEEecCCCEEEEEEc-----CCeEEEEECCCCceEEEEecCCc
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRC-VRTYYGHRQAVRDICFNNTGTNFISAGY-----DRYLKLWDTESGECISRFTSRKV 479 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~-~~~l~~H~~~V~sl~fspdg~~l~S~s~-----Dg~I~lWDl~t~~~i~~~~~~~~ 479 (1019)
.+++.|..+|.|.+-.++..... .....+|...+++++|++-..-++++|. |..+.|||+.++-. . +
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~lt-----v--P 143 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLT-----V--P 143 (783)
T ss_pred hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccC-----C--C
Confidence 57889999999999988665544 5566788899999999986444444444 45799999987621 0 0
Q ss_pred eEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceE
Q psy307 480 AYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYAC 559 (1019)
Q Consensus 480 v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~ 559 (1019)
-....|+. .......+++|-.+.+.+.+|.....+.++|++.... ....+.. .++.
T Consensus 144 ke~~~fs~------------------~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~--~~~svnT----k~vq 199 (783)
T KOG1008|consen 144 KESPLFSS------------------STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD--SVSSVNT----KYVQ 199 (783)
T ss_pred cccccccc------------------ccccCccccccccCcchhhcccccchhhhhhhhhhhh--hhhhhhh----hhcc
Confidence 00111111 1223344788888889999999999999999983211 1111111 2456
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEe-CCCC-ceeeeeeccC----CCEEEEEEcCCCCcEEEEEeCCCcEEEEeccc
Q psy307 560 SLDFSP-DMSYLISGDADGKCYIWD-WKTT-KLFKKWKAHD----GVCISTLWHPHEPSKVVTAGWDAATAKVQDAN 629 (1019)
Q Consensus 560 ~v~fsp-dg~~Lasgs~DG~I~IWD-l~t~-~~l~~l~~h~----~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~ 629 (1019)
.+..+| .+.|+++-. ||.|-+|| ...- .++..+.... ..+..++|+|..+.++++...|...+..++..
T Consensus 200 G~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 200 GITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 678888 788888765 99999999 3332 3333332222 24899999999888999999887666655544
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0012 Score=77.82 Aligned_cols=245 Identities=13% Similarity=0.148 Sum_probs=141.5
Q ss_pred eCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccE
Q psy307 303 HPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAV 382 (1019)
Q Consensus 303 ~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V 382 (1019)
++...|+|.++-..+... +. -++.- .++++||+|. .-+|++|-.-|.+.+|.. ...+.......|..+|
T Consensus 36 S~er~GSVtIfadtGEPq-----r~-Vt~P~---hatSLCWHpe-~~vLa~gwe~g~~~v~~~-~~~e~htv~~th~a~i 104 (1416)
T KOG3617|consen 36 SPERGGSVTIFADTGEPQ-----RD-VTYPV---HATSLCWHPE-EFVLAQGWEMGVSDVQKT-NTTETHTVVETHPAPI 104 (1416)
T ss_pred cCCCCceEEEEecCCCCC-----cc-cccce---ehhhhccChH-HHHHhhccccceeEEEec-CCceeeeeccCCCCCc
Confidence 344567777775554321 11 11222 3567999995 778999999999999997 3334444456799999
Q ss_pred eEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeE-----------------EEEEc------------
Q psy307 383 RDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRC-----------------VRTYY------------ 433 (1019)
Q Consensus 383 ~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~-----------------~~~l~------------ 433 (1019)
..+.||++| ..++++..-|.|.+|....-++. ...+.
T Consensus 105 ~~l~wS~~G--------------~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKa 170 (1416)
T KOG3617|consen 105 QGLDWSHDG--------------TVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKA 170 (1416)
T ss_pred eeEEecCCC--------------CeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhh
Confidence 999999999 68999999999999987422110 00000
Q ss_pred ---cccccEe------------EE--EEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCc-----------eE----
Q psy307 434 ---GHRQAVR------------DI--CFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKV-----------AY---- 481 (1019)
Q Consensus 434 ---~H~~~V~------------sl--~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~-----------v~---- 481 (1019)
+....+- ++ .=.|+|..|+.++.+|+|.-.|- .|++......++. +.
T Consensus 171 aVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~vQmLf~~~~eai~~i~e 249 (1416)
T KOG3617|consen 171 AVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSEVQMLFMGYCEAISIIIE 249 (1416)
T ss_pred hccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccchHHHHHhcccceEEEEee
Confidence 0000110 00 11357778899999999988883 4555444443322 11
Q ss_pred ----EEEEecCCCee------eeccCCC-----------------ceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEE
Q psy307 482 ----CVKFHPDEDKQ------HLDIPVD-----------------MKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILI 534 (1019)
Q Consensus 482 ----~v~~~p~~~~~------~~~~~~~-----------------~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~i 534 (1019)
|+-+.+..... .+....+ ...........+.+++++..+..++.|...|.+.+
T Consensus 250 ~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~ 329 (1416)
T KOG3617|consen 250 FLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTI 329 (1416)
T ss_pred eceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEE
Confidence 11122211100 0000000 00111122345889999999999999999999999
Q ss_pred EEccC-ccccc---ceeEEeccc-cccceEEEEEcCCCCEEEEE
Q psy307 535 FSALN-RFKLN---RKKTFEGHM-VAGYACSLDFSPDMSYLISG 573 (1019)
Q Consensus 535 wd~~~-~~~~~---~~~~l~gh~-~~~~V~~v~fspdg~~Lasg 573 (1019)
|--.+ ++... ....+.+.. ..+.|+.+.|.|-...++.-
T Consensus 330 w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn 373 (1416)
T KOG3617|consen 330 WLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVN 373 (1416)
T ss_pred eeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhh
Confidence 95432 22211 122232221 23668999999865544433
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0064 Score=75.34 Aligned_cols=225 Identities=10% Similarity=0.087 Sum_probs=126.2
Q ss_pred eEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEE
Q psy307 395 ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRF 474 (1019)
Q Consensus 395 vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~ 474 (1019)
|.++.|.... .-++.+..+|.|.+-|..+. .+.....-...|.+++|+||+..++..+.++++.+-+ .+..++...
T Consensus 71 i~s~~fl~d~-~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E~ 146 (1265)
T KOG1920|consen 71 IVSVQFLADT-NSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAEK 146 (1265)
T ss_pred eEEEEEeccc-ceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhcc
Confidence 3334433333 46777788888888876332 3333344567899999999999999988888876643 222221111
Q ss_pred e------cCCceEEEEEecCCCeeee-------ccCC-Cceeee-CCCCCcccEEEEcCCCCEEEEE-----ecCCeEEE
Q psy307 475 T------SRKVAYCVKFHPDEDKQHL-------DIPV-DMKYIA-DPTMHSMPAVTSSPNNKWLACQ-----SMDNKILI 534 (1019)
Q Consensus 475 ~------~~~~v~~v~~~p~~~~~~~-------~~~~-~~~~i~-~~~~~~i~~v~~spdg~~Lasg-----s~Dg~I~i 534 (1019)
. .......+.|......... .-.. ..+... ......-++++|-.||.++|+. .....|+|
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 1 1122223333222111110 0000 000000 0011234579999999999984 33379999
Q ss_pred EEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe---CCCeEEEEeCCC---CceeeeeeccCCCEEEEEEcCC
Q psy307 535 FSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD---ADGKCYIWDWKT---TKLFKKWKAHDGVCISTLWHPH 608 (1019)
Q Consensus 535 wd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs---~DG~I~IWDl~t---~~~l~~l~~h~~~V~sl~~sp~ 608 (1019)
||.... ++.. +....+.-.+++|-|.|..+++-. .|+.|.++.-.. |...-.+......|..++|+.+
T Consensus 227 ~drEg~--Lns~----se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 227 YDREGA--LNST----SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred ecccch--hhcc----cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence 997622 1111 111123344789999999988753 466899998432 2222233334445999999998
Q ss_pred CCcEEEE---EeCCCcEEEEeccce
Q psy307 609 EPSKVVT---AGWDAATAKVQDANI 630 (1019)
Q Consensus 609 ~~~~l~s---~s~Dg~I~iwwd~~i 630 (1019)
+ ..|+. +.....|.+|...|+
T Consensus 301 s-diLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 301 S-DILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred C-CceeeeecccccceEEEEEecCe
Confidence 8 46655 444445878766664
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00047 Score=82.28 Aligned_cols=145 Identities=17% Similarity=0.272 Sum_probs=107.2
Q ss_pred CCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeC---------CCeEEEEec
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSM---------DCRVKLWEV 365 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~---------Dg~I~IWdl 365 (1019)
.+.+|.+..|...|.|.|.+... .+.++++..|++.|.++.. .|++|+|||. |.-|+|||+
T Consensus 184 R~Nnr~lf~G~t~G~V~LrD~~s-------~~~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 184 RYNNRNLFCGDTRGTVFLRDPNS-------FETIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred EecCcEEEeecccceEEeecCCc-------Cceeeeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhh
Confidence 57889999999999999987663 3579999999999999886 3678888874 566899998
Q ss_pred CCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEc---cCCCeEEEEEccccccEeEE
Q psy307 366 YKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEV---YKEHRCVRTYYGHRQAVRDI 442 (1019)
Q Consensus 366 ~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl---~~~~~~~~~l~~H~~~V~sl 442 (1019)
.. -+.+.-+.-+.++ . -+.|+|.-...+++++..|...+-|. .+...-+..+......+.++
T Consensus 254 Rm-mral~PI~~~~~P-~-------------flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~f 318 (1118)
T KOG1275|consen 254 RM-MRALSPIQFPYGP-Q-------------FLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAF 318 (1118)
T ss_pred hh-hhccCCcccccCc-h-------------hhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeE
Confidence 32 2222222222222 1 24556666688999999999999994 22222333344445569999
Q ss_pred EEecCCCEEEEEEcCCeEEEEE
Q psy307 443 CFNNTGTNFISAGYDRYLKLWD 464 (1019)
Q Consensus 443 ~fspdg~~l~S~s~Dg~I~lWD 464 (1019)
+++++|+.++.|..+|.|.+|-
T Consensus 319 DiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 319 DISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EecCCCceEEEecccCcEeeec
Confidence 9999999999999999999997
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0035 Score=74.18 Aligned_cols=176 Identities=13% Similarity=0.196 Sum_probs=103.8
Q ss_pred EEcCCCCcEEEEee----CCCeEEEEecCCCcEEEE--EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 342 RWFPKSAHLLLSCS----MDCRVKLWEVYKERRCVR--TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 342 ~fspd~g~lLaSgs----~Dg~I~IWdl~~~~~~~~--~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
.|+| ...++++++ ..|.|.|+-- .+++.+ ++.-| +++++|+|.. -.|++|-.-|
T Consensus 22 SWHP-sePlfAVA~fS~er~GSVtIfad--tGEPqr~Vt~P~h---atSLCWHpe~--------------~vLa~gwe~g 81 (1416)
T KOG3617|consen 22 SWHP-SEPLFAVASFSPERGGSVTIFAD--TGEPQRDVTYPVH---ATSLCWHPEE--------------FVLAQGWEMG 81 (1416)
T ss_pred ccCC-CCceeEEEEecCCCCceEEEEec--CCCCCccccccee---hhhhccChHH--------------HHHhhccccc
Confidence 4555 244555443 4577888753 222222 22222 4557777765 4788888889
Q ss_pred cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEE-----ecCC--ceEEEEEecC
Q psy307 416 RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRF-----TSRK--VAYCVKFHPD 488 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~-----~~~~--~v~~v~~~p~ 488 (1019)
.+.+|.. ...+.......|..+|..+.||++|..++++..-|.|.+|.......++.. .... ...|...+++
T Consensus 82 ~~~v~~~-~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~ 160 (1416)
T KOG3617|consen 82 VSDVQKT-NTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYD 160 (1416)
T ss_pred eeEEEec-CCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCC
Confidence 9999997 445555566789999999999999999999999999999987532222211 1112 2335555555
Q ss_pred CCeeee----ccCCCceee-----eCCC--CCcccEEEEcCCCCEEEEEecCCeEEEEEccC
Q psy307 489 EDKQHL----DIPVDMKYI-----ADPT--MHSMPAVTSSPNNKWLACQSMDNKILIFSALN 539 (1019)
Q Consensus 489 ~~~~~~----~~~~~~~~i-----~~~~--~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~ 539 (1019)
+...+- ....+...+ +.+. ..+.. -.-.|+|..++.++.+|+|+-.|-.+
T Consensus 161 ~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-ksgv~~g~~F~~~~~~GtVyyvdq~g 221 (1416)
T KOG3617|consen 161 REEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-KSGVPKGTEFLFAGKSGTVYYVDQNG 221 (1416)
T ss_pred hHHhhhhhhhhccCchhhhcccccCccchhhcccc-ccCCCCCcEEEEEcCCceEEEEcCCC
Confidence 321110 000000000 0000 00000 11257889999999999999887544
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.13 Score=58.23 Aligned_cols=262 Identities=12% Similarity=0.073 Sum_probs=122.6
Q ss_pred EEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccC-ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEE
Q psy307 342 RWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHR-QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLW 420 (1019)
Q Consensus 342 ~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~-~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IW 420 (1019)
+|.+++..+|+++..||.-.+|-+.-....+..+.... .......+++++ +.++-......|+-.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~--------------~~~~Yv~~~~~l~~v 107 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDD--------------RALYYVKNGRSLRRV 107 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTS--------------SEEEEEETTTEEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCC--------------CeEEEEECCCeEEEE
Confidence 56777777888888888777765543334444444433 222244555555 334334445677777
Q ss_pred EccCCCeEEEEEccccccEeEEEEe--cCCCEEEEEE----------------------cCCeEEEEECCCCceEEEEec
Q psy307 421 EVYKEHRCVRTYYGHRQAVRDICFN--NTGTNFISAG----------------------YDRYLKLWDTESGECISRFTS 476 (1019)
Q Consensus 421 Dl~~~~~~~~~l~~H~~~V~sl~fs--pdg~~l~S~s----------------------~Dg~I~lWDl~t~~~i~~~~~ 476 (1019)
|+.+ .+....+......+-...|. .++..++-.- -.+.|.--|+.+|+....+..
T Consensus 108 dL~T-~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~ 186 (386)
T PF14583_consen 108 DLDT-LEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED 186 (386)
T ss_dssp ETTT---EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE
T ss_pred ECCc-CcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec
Confidence 8743 34444444455555444553 3455543221 123577778999988777777
Q ss_pred CCceEEEEEecCCCeeee----------c-----c--C-CCceeeeC-CCCCcccEEEEcCCCCEEEEEec-----CCeE
Q psy307 477 RKVAYCVKFHPDEDKQHL----------D-----I--P-VDMKYIAD-PTMHSMPAVTSSPNNKWLACQSM-----DNKI 532 (1019)
Q Consensus 477 ~~~v~~v~~~p~~~~~~~----------~-----~--~-~~~~~i~~-~~~~~i~~v~~spdg~~Lasgs~-----Dg~I 532 (1019)
......+.|+|.....+. + + . ...+.+.. ..+..+..=-|.|+|..|.--+. +..|
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i 266 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWI 266 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEE
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEE
Confidence 766677777775543332 0 0 0 01111111 11223344567889887765322 3355
Q ss_pred EEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC----------------eEEEEeCCCCceeee----
Q psy307 533 LIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG----------------KCYIWDWKTTKLFKK---- 592 (1019)
Q Consensus 533 ~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG----------------~I~IWDl~t~~~l~~---- 592 (1019)
.-+|+.++... ..... .+......++||++++-=+.|. .|+++++..++....
T Consensus 267 ~~~d~~t~~~~---~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~ 339 (386)
T PF14583_consen 267 AGYDPDTGERR---RLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHD 339 (386)
T ss_dssp EEE-TTT--EE---EEEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE--
T ss_pred EeeCCCCCCce---EEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeecc
Confidence 66666655221 11111 1233566688999876544331 567788877654211
Q ss_pred -----eeccCC-CEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 593 -----WKAHDG-VCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 593 -----l~~h~~-~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+.+|.. .=....|+||+...|.++...|...++
T Consensus 340 ~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 340 TSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp -----BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 122221 124678999998888888888887554
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0015 Score=71.62 Aligned_cols=156 Identities=12% Similarity=0.114 Sum_probs=106.6
Q ss_pred EEEEccccccEeEEEEecCCC-EEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCC
Q psy307 429 VRTYYGHRQAVRDICFNNTGT-NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPT 507 (1019)
Q Consensus 429 ~~~l~~H~~~V~sl~fspdg~-~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~ 507 (1019)
.+.+.+|...|.+++|+|..+ .+..++.+.+|+|.|+++..++..+..+..+++.+|.-+
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDld------------------- 246 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLD------------------- 246 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccC-------------------
Confidence 456788899999999999887 688899999999999999999988888777777777544
Q ss_pred CCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEE------cCCCCEEEEEeCCCeEEE
Q psy307 508 MHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDF------SPDMSYLISGDADGKCYI 581 (1019)
Q Consensus 508 ~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~f------spdg~~Lasgs~DG~I~I 581 (1019)
+.++|.+|-.+|.|.|||++..... +..+.+.....+|..++. .+-|.+++..+.+ +.+
T Consensus 247 -----------e~h~IYaGl~nG~VlvyD~R~~~~~--~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f 311 (463)
T KOG1645|consen 247 -----------ERHVIYAGLQNGMVLVYDMRQPEGP--LMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQF 311 (463)
T ss_pred -----------CcceeEEeccCceEEEEEccCCCch--HhhhhhhhccCcceeecccCccccccccceEEeeehh--hhh
Confidence 3468889999999999999865321 222323222233444332 3345555554443 677
Q ss_pred EeCCC--Cceeeeee-ccCCCEEEEEEcCCCCcEEEEEeC
Q psy307 582 WDWKT--TKLFKKWK-AHDGVCISTLWHPHEPSKVVTAGW 618 (1019)
Q Consensus 582 WDl~t--~~~l~~l~-~h~~~V~sl~~sp~~~~~l~s~s~ 618 (1019)
|++.- +....+++ ...+.+++++.++.....++|.-.
T Consensus 312 ~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs 351 (463)
T KOG1645|consen 312 YEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRS 351 (463)
T ss_pred hhhhccccCCCcccccCCCcceeeeeecCccceEEEEecC
Confidence 77643 22333333 235678888888866667777655
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.055 Score=64.55 Aligned_cols=172 Identities=13% Similarity=0.047 Sum_probs=112.9
Q ss_pred EecCCCEEE-EEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccC---CCc--eeeeCCCCCcccEEEE-
Q psy307 444 FNNTGTNFI-SAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIP---VDM--KYIADPTMHSMPAVTS- 516 (1019)
Q Consensus 444 fspdg~~l~-S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~---~~~--~~i~~~~~~~i~~v~~- 516 (1019)
++|||+.+. +.-+.+.+.+.|.++.+...++.....+..+.++|++....+... ... ..+...... ..+.|
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d--~~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD--WVVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCc--eEEEEc
Confidence 456776543 334567788999999998888888888888999999887776531 111 111111111 22333
Q ss_pred -------cCCCCEEEEEecCCeEEEEEccC----cccccceeEEeccccccceEEEEEcCCCCEEEEEe-CCCeEEEEeC
Q psy307 517 -------SPNNKWLACQSMDNKILIFSALN----RFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD-ADGKCYIWDW 584 (1019)
Q Consensus 517 -------spdg~~Lasgs~Dg~I~iwd~~~----~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl 584 (1019)
.++|++... .++.|.++|..+ +. .....+.- ......+.+||||+++++++ .+.+|.|.|+
T Consensus 278 i~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~--~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv 350 (635)
T PRK02888 278 IARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGS--ALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDV 350 (635)
T ss_pred hHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCc--ceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEC
Confidence 457777666 368899999886 21 12222221 13366799999999876655 5889999999
Q ss_pred CCCce------------eeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 585 KTTKL------------FKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 585 ~t~~~------------l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
.+.+. +.....-.+ ....+|.++| ....|.--|..|.+|.
T Consensus 351 ~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G-~aytslf~dsqv~kwn 402 (635)
T PRK02888 351 RKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRG-NAYTTLFLDSQIVKWN 402 (635)
T ss_pred hhhhhhhhccCCccceEEEeeccCCC-cceEEECCCC-CEEEeEeecceeEEEe
Confidence 87552 344443333 3567899887 5888888999998874
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.21 Score=52.49 Aligned_cols=118 Identities=8% Similarity=-0.020 Sum_probs=73.9
Q ss_pred cCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEcc
Q psy307 344 FPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVY 423 (1019)
Q Consensus 344 spd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~ 423 (1019)
.++...+++.||..+.+.--|.+.+.-..+.+.+- .|.+-+.- - +++++.|+..|.+++.+..
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~--RiE~sa~v-v--------------gdfVV~GCy~g~lYfl~~~ 81 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGV--RIECSAIV-V--------------GDFVVLGCYSGGLYFLCVK 81 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCcEEeehhhCc--eeeeeeEE-E--------------CCEEEEEEccCcEEEEEec
Confidence 34455677777777777777764433322333221 12111111 1 2679999999999999994
Q ss_pred CCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCc
Q psy307 424 KEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKV 479 (1019)
Q Consensus 424 ~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~ 479 (1019)
+ +..+..+..-..-=......+++..+..++.|++....|.++..++...+.+..
T Consensus 82 t-Gs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~ 136 (354)
T KOG4649|consen 82 T-GSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG 136 (354)
T ss_pred c-hhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc
Confidence 4 433333332211111225567899999999999999999999999887765543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.079 Score=61.77 Aligned_cols=261 Identities=7% Similarity=0.019 Sum_probs=131.6
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEecccCc-cEeEEEEcCC-CCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCC
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQ-AVRDICFNNT-GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE 425 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~-~V~~i~fspd-g~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~ 425 (1019)
+..+++++.+|.|.-+|..+ ++.+....-... .+ ++.. +..+..... ..+..++.++.+|.+..+|. .+
T Consensus 69 ~~~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~~~~----~~~~~~~~~~~~~~---v~~~~v~v~~~~g~l~ald~-~t 139 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADT-GKEIWSVDLSEKDGW----FSKNKSALLSGGVT---VAGGKVYIGSEKGQVYALNA-ED 139 (394)
T ss_pred CCEEEEECCCCeEEEEECCC-CcEeeEEcCCCcccc----cccccccccccccE---EECCEEEEEcCCCEEEEEEC-CC
Confidence 34677777888888888844 444443322110 00 0000 000000000 01246778889999999998 44
Q ss_pred CeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceE-------------EEEE-ecCCCe
Q psy307 426 HRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY-------------CVKF-HPDEDK 491 (1019)
Q Consensus 426 ~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~-------------~v~~-~p~~~~ 491 (1019)
++.+...........+... .+..++.++.++.|.-+|..+|+.+..+....... .+-+ ..++..
T Consensus 140 G~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v 217 (394)
T PRK11138 140 GEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRV 217 (394)
T ss_pred CCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEE
Confidence 4444444332211111122 23467778889999999999999887776432110 0111 111111
Q ss_pred eeeccCCCceeee----CCC-CCc---ccEEEEcC--CCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEE
Q psy307 492 QHLDIPVDMKYIA----DPT-MHS---MPAVTSSP--NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSL 561 (1019)
Q Consensus 492 ~~~~~~~~~~~i~----~~~-~~~---i~~v~~sp--dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v 561 (1019)
..++......... .+. ... ...+..+| .+..+++++.+|.+..+|..++....... + + . ...+
T Consensus 218 ~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-~-~----~-~~~~ 290 (394)
T PRK11138 218 SAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-Y-G----S-VNDF 290 (394)
T ss_pred EEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec-C-C----C-ccCc
Confidence 1222111110000 000 000 00111122 24567777789999999998874432211 1 1 1 1112
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccC-CCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceee
Q psy307 562 DFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHD-GVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVK 632 (1019)
Q Consensus 562 ~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~-~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~k 632 (1019)
.. ++..|+.++.+|.+..+|..+|+.+-....-. ....+.... + ..|+.++.||.+..+ +...++
T Consensus 291 ~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~~G~l~~l-d~~tG~ 356 (394)
T PRK11138 291 AV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--N-GYLVVGDSEGYLHWI-NREDGR 356 (394)
T ss_pred EE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--C-CEEEEEeCCCEEEEE-ECCCCC
Confidence 22 46678888899999999999998765432211 112222222 3 367888889988654 443343
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.065 Score=57.72 Aligned_cols=201 Identities=10% Similarity=0.127 Sum_probs=103.6
Q ss_pred EEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccc-cccEeEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEE
Q psy307 396 SAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGH-RQAVRDICFNNTGTNFISAGYDRYLKLWDTESGE-CISR 473 (1019)
Q Consensus 396 s~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H-~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~-~i~~ 473 (1019)
+++.|.|+.+.++++....+.|...+. .++.++.+.-. .+..-.|++..++.++++.-.++.+.+.++.... .+..
T Consensus 25 SGLTy~pd~~tLfaV~d~~~~i~els~--~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~ 102 (248)
T PF06977_consen 25 SGLTYNPDTGTLFAVQDEPGEIYELSL--DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDR 102 (248)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEET--T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--E
T ss_pred cccEEcCCCCeEEEEECCCCEEEEEcC--CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccch
Confidence 444444444578888888888877775 45666665433 4678888998777666655458888888874321 1100
Q ss_pred EecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccC---cccccceeEEe
Q psy307 474 FTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALN---RFKLNRKKTFE 550 (1019)
Q Consensus 474 ~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~---~~~~~~~~~l~ 550 (1019)
-. +..+.+. +.......+..++|+|.++.|+++-...-..+|.+.. ...... ....
T Consensus 103 ~~----~~~~~l~----------------~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~-~~~~ 161 (248)
T PF06977_consen 103 AD----VQKISLG----------------FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFV-SDDQ 161 (248)
T ss_dssp EE----EEEEE-------------------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EE-EE-H
T ss_pred hh----ceEEecc----------------cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceee-cccc
Confidence 00 0111100 0012234567899999887777777776666776654 111110 0110
Q ss_pred cc----ccccceEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeeeeeccC---------CCEEEEEEcCCCCcEEEEE
Q psy307 551 GH----MVAGYACSLDFSPD-MSYLISGDADGKCYIWDWKTTKLFKKWKAHD---------GVCISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 551 gh----~~~~~V~~v~fspd-g~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~---------~~V~sl~~sp~~~~~l~s~ 616 (1019)
.+ ....-+.+++++|. |.+++..+....|.++| .+|+++..+.-.. ...-+++|.++|. |...
T Consensus 162 ~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~--LYIv 238 (248)
T PF06977_consen 162 DLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN--LYIV 238 (248)
T ss_dssp HHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT----EEEE
T ss_pred ccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC--EEEE
Confidence 11 01133678899995 55667777788999999 6777766554222 2467888888773 4444
Q ss_pred eCCCcE
Q psy307 617 GWDAAT 622 (1019)
Q Consensus 617 s~Dg~I 622 (1019)
+.-+..
T Consensus 239 sEpNlf 244 (248)
T PF06977_consen 239 SEPNLF 244 (248)
T ss_dssp ETTTEE
T ss_pred cCCceE
Confidence 444433
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.14 Score=55.13 Aligned_cols=212 Identities=12% Similarity=0.182 Sum_probs=111.2
Q ss_pred eeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEeccc-CccEeEEEEcCCCCceeEEEeecCCCCcEE
Q psy307 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGH-RQAVRDICFNNTGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 330 ~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh-~~~V~~i~fspdg~~~vs~i~~~p~~~~~L 408 (1019)
.+.|-.+.++.|+|+|+++.++++....+.|...+. .++.++.+.-. .+-.-.|++..++ .++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~--~G~vlr~i~l~g~~D~EgI~y~g~~--------------~~v 79 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL--DGKVLRRIPLDGFGDYEGITYLGNG--------------RYV 79 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET--T--EEEEEE-SS-SSEEEEEE-STT--------------EEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC--CCCEEEEEeCCCCCCceeEEEECCC--------------EEE
Confidence 344555679999999998889999999999988886 35666665432 2446667776665 466
Q ss_pred EEEeCCCcEEEEEccCCCe-----EEEEE-----ccccccEeEEEEecCCCEEEEEEcCCeEEEEECCC---CceEEEEe
Q psy307 409 LSCSMDCRVKLWEVYKEHR-----CVRTY-----YGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTES---GECISRFT 475 (1019)
Q Consensus 409 ~sgs~Dg~I~IWDl~~~~~-----~~~~l-----~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t---~~~i~~~~ 475 (1019)
++.-.++.+.+.++..... ....+ ..++..+-.++|++.++.|+.+-......|+.+.. ...+....
T Consensus 80 l~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 80 LSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp EEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence 6665689999988833221 11111 13556799999999988888887776666666543 11111100
Q ss_pred cCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC-CCEEEEEecCCeEEEEEccCcccccceeEEeccc-
Q psy307 476 SRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN-NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHM- 553 (1019)
Q Consensus 476 ~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd-g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~- 553 (1019)
.. ... -.......+.+++++|. |++++.+..+..|.++|.... .. ....+....
T Consensus 160 ~~-----------------~~~-----~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~-~~-~~~~L~~g~~ 215 (248)
T PF06977_consen 160 DQ-----------------DLD-----DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGR-VV-SSLSLDRGFH 215 (248)
T ss_dssp -H-----------------HHH------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---EE-EEEE-STTGG
T ss_pred cc-----------------ccc-----cccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCC-EE-EEEEeCCccc
Confidence 00 000 01122334567777776 455666667778888885432 21 122222210
Q ss_pred ----cccceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy307 554 ----VAGYACSLDFSPDMSYLISGDADGKCYIW 582 (1019)
Q Consensus 554 ----~~~~V~~v~fspdg~~Lasgs~DG~I~IW 582 (1019)
.-...-.|+|.++|++.+++ .-+..+++
T Consensus 216 gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 216 GLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp G-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred CcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 01236689999999755544 55555544
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.24 Score=57.97 Aligned_cols=85 Identities=9% Similarity=0.101 Sum_probs=55.1
Q ss_pred EEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee
Q psy307 515 TSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK 594 (1019)
Q Consensus 515 ~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~ 594 (1019)
.++.+....+....++.+.+.+..... .+.. .+++..+++||+|++||.-..+|.+.|.+..-.+.+..+.
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~------~i~~---~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFK------QIDS---DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEccccc------cccC---CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 344555555566666677755433210 1111 2569999999999999999999999999876666666655
Q ss_pred cc-CCCEEEEEEcCC
Q psy307 595 AH-DGVCISTLWHPH 608 (1019)
Q Consensus 595 ~h-~~~V~sl~~sp~ 608 (1019)
.. ......+.|+-+
T Consensus 256 ~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 256 TDSKSPPKQMAWCGN 270 (410)
T ss_pred cCcCCCCcEEEEECC
Confidence 43 234456666543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.056 Score=66.77 Aligned_cols=148 Identities=10% Similarity=0.132 Sum_probs=95.0
Q ss_pred CcEEEE-eeCCCeEEEEecCCCcEEEEEecccCcc-EeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCC
Q psy307 348 AHLLLS-CSMDCRVKLWEVYKERRCVRTYYGHRQA-VRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE 425 (1019)
Q Consensus 348 g~lLaS-gs~Dg~I~IWdl~~~~~~~~~~~gh~~~-V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~ 425 (1019)
..+|+. ......|.--|+ ..++.+..+..|... |.+++ |+.. +..-.+...+.|-.+..+..||.+..
T Consensus 493 ~~mil~~~~~~~~ly~mDL-e~GKVV~eW~~~~~~~v~~~~--p~~K-------~aqlt~e~tflGls~n~lfriDpR~~ 562 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDL-ERGKVVEEWKVHDDIPVVDIA--PDSK-------FAQLTNEQTFLGLSDNSLFRIDPRLS 562 (794)
T ss_pred cceEeecCCCCCceEEEec-CCCcEEEEeecCCCcceeEec--cccc-------ccccCCCceEEEECCCceEEeccCCC
Confidence 344443 345677888888 566778888777654 55443 3321 12222356788889999999999866
Q ss_pred CeEEEEEc----cccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCce
Q psy307 426 HRCVRTYY----GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMK 501 (1019)
Q Consensus 426 ~~~~~~l~----~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~ 501 (1019)
+..+..-. .......|++-+.+| +||.|+.+|.||+||- .|.. .+
T Consensus 563 ~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~-----------------------------AK 611 (794)
T PF08553_consen 563 GNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKR-----------------------------AK 611 (794)
T ss_pred CCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchh-----------------------------hh
Confidence 53222212 234456777777666 7999999999999993 2211 11
Q ss_pred eeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEc
Q psy307 502 YIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSA 537 (1019)
Q Consensus 502 ~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~ 537 (1019)
........+|..|.++.||+||++.+ +..+.++++
T Consensus 612 T~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 612 TALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred hcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 11223346788899999999988776 566777765
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.036 Score=58.83 Aligned_cols=247 Identities=13% Similarity=0.117 Sum_probs=126.8
Q ss_pred EEEEcCCCCcEEEEeeCCCeE-EEEecCCCcEEE-------EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEE
Q psy307 340 AIRWFPKSAHLLLSCSMDCRV-KLWEVYKERRCV-------RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSC 411 (1019)
Q Consensus 340 ~i~fspd~g~lLaSgs~Dg~I-~IWdl~~~~~~~-------~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sg 411 (1019)
.|+|+|-.+.-++.+-.-|+. .++|......++ +.+.||. .||+|| .+|+..
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG--------------~~LYAT 131 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDG--------------RLLYAT 131 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCC--------------cEEEee
Confidence 366666655556666555553 456664332221 2344553 578887 466655
Q ss_pred eCC-----CcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEE-ECCCCceEEEEecCCceEEEEE
Q psy307 412 SMD-----CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLW-DTESGECISRFTSRKVAYCVKF 485 (1019)
Q Consensus 412 s~D-----g~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lW-Dl~t~~~i~~~~~~~~v~~v~~ 485 (1019)
-.| |.|-|||.+..-+.+..+..|.-.-..+.|.+||+.++.+. |-|..- |.. +....+..-. .++.+
T Consensus 132 Endfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfg--R~~lNldsMe--PSlvl 205 (366)
T COG3490 132 ENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFG--RTELNLDSME--PSLVL 205 (366)
T ss_pred cCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccC--ccccchhhcC--ccEEE
Confidence 443 78999999877788888999988888999999999987664 334333 211 0000000000 00000
Q ss_pred -e-cCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCe-------EEEEEccCcccccceeEEec--ccc
Q psy307 486 -H-PDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNK-------ILIFSALNRFKLNRKKTFEG--HMV 554 (1019)
Q Consensus 486 -~-p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~-------I~iwd~~~~~~~~~~~~l~g--h~~ 554 (1019)
. .++..+ .........+.-++..++..+||..++.+-..|. |-.+ ..+..+..+..-.. -.-
T Consensus 206 ld~atG~li-----ekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~--~~g~~l~~~~~pee~~~~~ 278 (366)
T COG3490 206 LDAATGNLI-----EKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHF--RKGEPLEFLDLPEEQTAAF 278 (366)
T ss_pred Eeccccchh-----hhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeec--cCCCcCcccCCCHHHHHHH
Confidence 0 011000 0000011124456777888888876655432221 1111 11111100000000 001
Q ss_pred ccceEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEE
Q psy307 555 AGYACSLDFSPDMSYLISGDA-DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAK 624 (1019)
Q Consensus 555 ~~~V~~v~fspdg~~Lasgs~-DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~i 624 (1019)
..+|-+|+.+.+..+++..+- .+...+||..||..+..-.-.+ +..++-...+ ++..+.+|.|..
T Consensus 279 anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d--aaGva~~~~g---f~vssg~G~~~~ 344 (366)
T COG3490 279 ANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD--AAGVAAAKGG---FAVSSGQGRIIF 344 (366)
T ss_pred HhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc--cccceeccCc---eEEecCCceEEe
Confidence 256777888776666655554 4567899999998876543221 2333333322 555566777754
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.072 Score=62.42 Aligned_cols=146 Identities=14% Similarity=0.082 Sum_probs=77.7
Q ss_pred cccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccE
Q psy307 434 GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPA 513 (1019)
Q Consensus 434 ~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~ 513 (1019)
...-....+.++|+|+.++. +.||.-.|+.....+.... +....
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----------------------------------G~g~~ 73 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----------------------------------GSGLS 73 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----------------------------------EE-SE
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----------------------------------CceeE
Confidence 34455788999999998877 5677777776333222111 22345
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee
Q psy307 514 VTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKW 593 (1019)
Q Consensus 514 v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l 593 (1019)
++|.+.++ +|+-...++|.|+.--... ..+.+.-. ..+..+-. |.+|+..+.+ .|.+|||.+++.+..+
T Consensus 74 ~vw~~~n~-yAv~~~~~~I~I~kn~~~~---~~k~i~~~---~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i 142 (443)
T PF04053_consen 74 FVWSSRNR-YAVLESSSTIKIYKNFKNE---VVKSIKLP---FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRI 142 (443)
T ss_dssp EEE-TSSE-EEEE-TTS-EEEEETTEE----TT-----S---S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEE
T ss_pred EEEecCcc-EEEEECCCeEEEEEcCccc---cceEEcCC---cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEE
Confidence 67777554 6666668899997322221 11122211 11333322 7777776555 8999999999999999
Q ss_pred eccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccc
Q psy307 594 KAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDAN 629 (1019)
Q Consensus 594 ~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~ 629 (1019)
... +|..+.|++++ .+++..+.+.....=++.+
T Consensus 143 ~v~--~vk~V~Ws~~g-~~val~t~~~i~il~~~~~ 175 (443)
T PF04053_consen 143 DVS--AVKYVIWSDDG-ELVALVTKDSIYILKYNLE 175 (443)
T ss_dssp SS---E-EEEEE-TTS-SEEEEE-S-SEEEEEE-HH
T ss_pred ecC--CCcEEEEECCC-CEEEEEeCCeEEEEEecch
Confidence 754 38999999998 5788877775443334444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.37 Score=54.46 Aligned_cols=175 Identities=14% Similarity=0.189 Sum_probs=100.2
Q ss_pred CcEEEEEccCCC---eEEEE--EccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCc-eEEEEecCCceEEEEEecC
Q psy307 415 CRVKLWEVYKEH---RCVRT--YYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGE-CISRFTSRKVAYCVKFHPD 488 (1019)
Q Consensus 415 g~I~IWDl~~~~---~~~~~--l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~-~i~~~~~~~~v~~v~~~p~ 488 (1019)
|.|.++++.... ..+.. -....++|.+|+-- .+ +|+.+ ..+.|.+|++...+ ....-..+.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~---------- 128 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFYDS---------- 128 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE-B----------
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhheecc----------
Confidence 889999996631 12222 23457889988766 34 44443 46899999988776 332222111
Q ss_pred CCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCC
Q psy307 489 EDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMS 568 (1019)
Q Consensus 489 ~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~ 568 (1019)
.+..+++...++++++|.....+.++...... .....+.......+++++.|-++++
T Consensus 129 ---------------------~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~--~~l~~va~d~~~~~v~~~~~l~d~~ 185 (321)
T PF03178_consen 129 ---------------------PFYITSLSVFKNYILVGDAMKSVSLLRYDEEN--NKLILVARDYQPRWVTAAEFLVDED 185 (321)
T ss_dssp ---------------------SSSEEEEEEETTEEEEEESSSSEEEEEEETTT--E-EEEEEEESS-BEEEEEEEE-SSS
T ss_pred ---------------------eEEEEEEeccccEEEEEEcccCEEEEEEEccC--CEEEEEEecCCCccEEEEEEecCCc
Confidence 11223333346799999988888887554321 1122232222335688899987778
Q ss_pred EEEEEeCCCeEEEEeCCC-------C--ceeeeeeccC-CCEEEE---EEcC--CCCc-----EEEEEeCCCcEEEE
Q psy307 569 YLISGDADGKCYIWDWKT-------T--KLFKKWKAHD-GVCIST---LWHP--HEPS-----KVVTAGWDAATAKV 625 (1019)
Q Consensus 569 ~Lasgs~DG~I~IWDl~t-------~--~~l~~l~~h~-~~V~sl---~~sp--~~~~-----~l~s~s~Dg~I~iw 625 (1019)
.++.++.+|.+.++.... + ++.....-|- ..|+++ .+.| .+.. .++-++.+|.|..+
T Consensus 186 ~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 186 TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 999999999999998752 2 2222223333 457777 5555 2222 48888899999754
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.042 Score=64.09 Aligned_cols=220 Identities=14% Similarity=0.155 Sum_probs=116.3
Q ss_pred CCCeEEEEEcCCCCcEEEEeeCC---CeEEEEecCCCcEE-EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEE
Q psy307 335 TKGISAIRWFPKSAHLLLSCSMD---CRVKLWEVYKERRC-VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLS 410 (1019)
Q Consensus 335 ~~~V~~i~fspd~g~lLaSgs~D---g~I~IWdl~~~~~~-~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~s 410 (1019)
...+..-+|+|++..+.+..-.. ..+.++++..+... +..+.++ -...+|+|||. .++++
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~---~~~P~fspDG~-------------~l~f~ 255 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN---NGAPAFSPDGS-------------KLAFS 255 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc---cCCccCCCCCC-------------EEEEE
Confidence 33566677888755544443222 45888998654322 2223333 23445666664 78888
Q ss_pred EeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc-CCe--EEEEECCCCceEEEEecCCceEEEEEec
Q psy307 411 CSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY-DRY--LKLWDTESGECISRFTSRKVAYCVKFHP 487 (1019)
Q Consensus 411 gs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~-Dg~--I~lWDl~t~~~i~~~~~~~~v~~v~~~p 487 (1019)
...||...||-+...++....+..-.+.-..-.|+|||++++-.+. .|. |.+.|.+.+... .+.. +.
T Consensus 256 ~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~---------~~ 325 (425)
T COG0823 256 SSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTF---------SG 325 (425)
T ss_pred ECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-Eeec---------cC
Confidence 8888876666443333333334433333335589999999876654 343 555566555432 1111 10
Q ss_pred CCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC-Ce--EEEEEccCcccccceeEEeccccccceEEEEEc
Q psy307 488 DEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD-NK--ILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564 (1019)
Q Consensus 488 ~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D-g~--I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fs 564 (1019)
..-..-.++|+|++|+..+.. |. |.+.|+.++.. ...+... ......+|.
T Consensus 326 ---------------------~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~---~~~lt~~---~~~e~ps~~ 378 (425)
T COG0823 326 ---------------------GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK---IRILTST---YLNESPSWA 378 (425)
T ss_pred ---------------------CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc---EEEcccc---ccCCCCCcC
Confidence 011134578999998877643 44 66666655422 2222221 123346788
Q ss_pred CCCCEEEEEeCCC--eEEEEeCCCCceeeeeeccCCCEEEEEEcC
Q psy307 565 PDMSYLISGDADG--KCYIWDWKTTKLFKKWKAHDGVCISTLWHP 607 (1019)
Q Consensus 565 pdg~~Lasgs~DG--~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp 607 (1019)
|+|+.++..+..+ .+..--..+++....+....+.+...+|+|
T Consensus 379 ~ng~~i~~~s~~~~~~~l~~~s~~g~~~~~~~~~~~~~~~p~w~~ 423 (425)
T COG0823 379 PNGRMIMFSSGQGGGSVLSLVSLDGRVSRPLPLADGDVRVPAWSP 423 (425)
T ss_pred CCCceEEEeccCCCCceEEEeeccceeEEEEeccCcceecccccC
Confidence 8888776554332 222222233444434444444555555554
|
|
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.077 Score=62.76 Aligned_cols=116 Identities=15% Similarity=0.088 Sum_probs=83.4
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCc
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCR 416 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~ 416 (1019)
.|.--++.. ++.+++.|+.-|.+.+++-..+........+-.+.+..+..+++. .+++.|+..|.
T Consensus 35 ~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e--------------~lvAagt~~g~ 99 (726)
T KOG3621|consen 35 RVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE--------------YLVAAGTASGR 99 (726)
T ss_pred eEEEEEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh--------------HhhhhhcCCce
Confidence 344344444 578999999999999999754433333333444555556666665 68889999999
Q ss_pred EEEEEccCCCeEEEEE-----ccccccEeEEEEecCCCEEEEEEcCCeEEEEECCC
Q psy307 417 VKLWEVYKEHRCVRTY-----YGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTES 467 (1019)
Q Consensus 417 I~IWDl~~~~~~~~~l-----~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t 467 (1019)
|.++-+......-..+ ..|...|++++|++++..+++|...|+|.+-.+.+
T Consensus 100 V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 100 VSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred EEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 9999886533222222 23778899999999999999999999998877765
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.18 Score=60.36 Aligned_cols=202 Identities=8% Similarity=0.054 Sum_probs=103.7
Q ss_pred ccEeEEEEc--CCCCceeEEEee---cCCCCcEE-EEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE
Q psy307 380 QAVRDICFN--NTGTNFISAIRW---FPKSAHLL-LSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS 453 (1019)
Q Consensus 380 ~~V~~i~fs--pdg~~~vs~i~~---~p~~~~~L-~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S 453 (1019)
..+..+++- |...+++....| .|.+++.+ .+.-..+.+.+.|..+ .+....+.-- +....+.++++|+++++
T Consensus 174 ~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~et-meV~~qV~Vd-gnpd~v~~spdGk~afv 251 (635)
T PRK02888 174 QGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAET-MEVAWQVMVD-GNLDNVDTDYDGKYAFS 251 (635)
T ss_pred cCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECcc-ceEEEEEEeC-CCcccceECCCCCEEEE
Confidence 344555553 444444433333 22233333 3444557777888743 3333332221 13345689999999888
Q ss_pred EEcCC----eEEEEECCCCceEEEEecCCceEEEEEecCCC--------eeeeccCC-----CceeeeCCCCCcccEEEE
Q psy307 454 AGYDR----YLKLWDTESGECISRFTSRKVAYCVKFHPDED--------KQHLDIPV-----DMKYIADPTMHSMPAVTS 516 (1019)
Q Consensus 454 ~s~Dg----~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~--------~~~~~~~~-----~~~~i~~~~~~~i~~v~~ 516 (1019)
++++. ++..-+......+..+..... -.+.+++. ..+++... ......-+-......+.+
T Consensus 252 TsyNsE~G~tl~em~a~e~d~~vvfni~~i---ea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~v 328 (635)
T PRK02888 252 TCYNSEEGVTLAEMMAAERDWVVVFNIARI---EEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNT 328 (635)
T ss_pred eccCcccCcceeeeccccCceEEEEchHHH---HHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEE
Confidence 76432 233333322222222211100 00111221 11222222 111122233445668999
Q ss_pred cCCCCEEEEEe-cCCeEEEEEccCccc-----ccceeEEecc-ccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy307 517 SPNNKWLACQS-MDNKILIFSALNRFK-----LNRKKTFEGH-MVAGYACSLDFSPDMSYLISGDADGKCYIWDWKT 586 (1019)
Q Consensus 517 spdg~~Lasgs-~Dg~I~iwd~~~~~~-----~~~~~~l~gh-~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t 586 (1019)
+|||+++++++ .+++|.|+|+..... +.....+.+. ..+-.....+|+++|....|-..|..|..||+.+
T Consensus 329 SPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 329 SPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 99999987765 588999999976432 1111111111 0112244679999999888888999999999876
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.61 Score=54.08 Aligned_cols=192 Identities=10% Similarity=0.070 Sum_probs=119.5
Q ss_pred eecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc---CCeEEEEECCCCceEEEEe
Q psy307 399 RWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY---DRYLKLWDTESGECISRFT 475 (1019)
Q Consensus 399 ~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~---Dg~I~lWDl~t~~~i~~~~ 475 (1019)
..++...+..+....++.|.+.|............+. ....++++++++.+..+.. ++++.+.|..+++.+.+..
T Consensus 80 ~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~ 157 (381)
T COG3391 80 AVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP 157 (381)
T ss_pred eeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence 3344444677777778999999963333333333333 5667899999988766655 6889999988888776644
Q ss_pred cCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE-ecCCeEEEEEccCcccccceeEEecccc
Q psy307 476 SRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ-SMDNKILIFSALNRFKLNRKKTFEGHMV 554 (1019)
Q Consensus 476 ~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg-s~Dg~I~iwd~~~~~~~~~~~~l~gh~~ 554 (1019)
....+ ..++++|+|..+... ..++.|.++|........ -.....-..
T Consensus 158 vG~~P-------------------------------~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~ 205 (381)
T COG3391 158 VGNTP-------------------------------TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGV 205 (381)
T ss_pred cCCCc-------------------------------ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccccccccc
Confidence 33211 456777888855544 478899999976542221 000000111
Q ss_pred ccceEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeee-eeccCCCEEEEEEcCCCCcEEEEEeCCCcEEE
Q psy307 555 AGYACSLDFSPDMSYLISGDAD---GKCYIWDWKTTKLFKK-WKAHDGVCISTLWHPHEPSKVVTAGWDAATAK 624 (1019)
Q Consensus 555 ~~~V~~v~fspdg~~Lasgs~D---G~I~IWDl~t~~~l~~-l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~i 624 (1019)
......+.++|+|.++...... +.+...|..++..... ..........+..+|+|....+.-+..+.+.+
T Consensus 206 ~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 206 GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 1334678999999976655443 5899999998887765 22211145678899998543333344455543
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.32 Score=56.40 Aligned_cols=225 Identities=9% Similarity=0.063 Sum_probs=137.0
Q ss_pred eEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe--CCC
Q psy307 338 ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS--MDC 415 (1019)
Q Consensus 338 V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs--~Dg 415 (1019)
-..++.++.+....++...++.|.+.|......+-....+. .-..+++++++. ...++-+ .++
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~-------------~vYV~n~~~~~~ 140 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGK-------------YVYVANAGNGNN 140 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCC-------------EEEEEecccCCc
Confidence 34577888766677777778999999964433322222332 455667777663 3444444 368
Q ss_pred cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEE-cCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeee
Q psy307 416 RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG-YDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL 494 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s-~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~ 494 (1019)
++.+.|. .+.........-..+ ..++++|+|..++.+. .++.|.+.|..+..... -.... .
T Consensus 141 ~vsvid~-~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~-~-------------- 202 (381)
T COG3391 141 TVSVIDA-ATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGS-L-------------- 202 (381)
T ss_pred eEEEEeC-CCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccccc-c--------------
Confidence 8888887 444444444433334 7889999999766554 78899999976654432 11000 0
Q ss_pred ccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC---CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEE
Q psy307 495 DIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD---NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLI 571 (1019)
Q Consensus 495 ~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D---g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~La 571 (1019)
.........+.++|+|..+...... +.+...|..++...... ...... ....+..+|+|+++.
T Consensus 203 ----------~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~--~~~~~~--~~~~v~~~p~g~~~y 268 (381)
T COG3391 203 ----------VGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD--LPVGSG--APRGVAVDPAGKAAY 268 (381)
T ss_pred ----------cccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEec--cccccC--CCCceeECCCCCEEE
Confidence 0001122346677788765554433 58888888776322110 111110 245688999999988
Q ss_pred EEeC-CCeEEEEeCCCCceeeeeeccCC---CEEEEEEcCCC
Q psy307 572 SGDA-DGKCYIWDWKTTKLFKKWKAHDG---VCISTLWHPHE 609 (1019)
Q Consensus 572 sgs~-DG~I~IWDl~t~~~l~~l~~h~~---~V~sl~~sp~~ 609 (1019)
+... .+.+.+.|..+......+..... .+..+++.+..
T Consensus 269 v~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 269 VANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred EEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 8744 48999999999888877654432 35566666543
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.7 Score=50.73 Aligned_cols=221 Identities=13% Similarity=0.167 Sum_probs=118.8
Q ss_pred CCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC
Q psy307 347 SAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH 426 (1019)
Q Consensus 347 ~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~ 426 (1019)
+++.|+.|+.+| |.++++.......+.. +...|..+...++- +.|++- .|+.+.++++..-.
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~--------------~~llvL-sd~~l~~~~L~~l~ 67 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPEL--------------NLLLVL-SDGQLYVYDLDSLE 67 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEeccc--------------CEEEEE-cCCccEEEEchhhc
Confidence 467899999999 8888883333333322 22338888888765 333333 34999999984322
Q ss_pred eEEEE-------------EccccccEeEEE--EecCCCEEEEEEcCCeEEEEECCCC-----ceEEEEecCCceEEEEEe
Q psy307 427 RCVRT-------------YYGHRQAVRDIC--FNNTGTNFISAGYDRYLKLWDTESG-----ECISRFTSRKVAYCVKFH 486 (1019)
Q Consensus 427 ~~~~~-------------l~~H~~~V~sl~--fspdg~~l~S~s~Dg~I~lWDl~t~-----~~i~~~~~~~~v~~v~~~ 486 (1019)
..... .......+...+ -...+...+.+...++|.+|..... +..+.+.....+.++.|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~ 147 (275)
T PF00780_consen 68 PVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL 147 (275)
T ss_pred cccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe
Confidence 22100 111223344444 1234445555666678888877553 566778888888888888
Q ss_pred cCCCeeee---------ccC-CCceeeeCCCCC-----------cccEEEEcCCCCEEEEEecCCeEEEEEccCcccccc
Q psy307 487 PDEDKQHL---------DIP-VDMKYIADPTMH-----------SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNR 545 (1019)
Q Consensus 487 p~~~~~~~---------~~~-~~~~~i~~~~~~-----------~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~ 545 (1019)
++ ..++ +.. .....+...... ....+.--+++.+|++. |..-...|..+. ...
T Consensus 148 ~~--~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~~G~-~~r- 221 (275)
T PF00780_consen 148 GN--KICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNKNGE-PSR- 221 (275)
T ss_pred CC--EEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcCCCC-cCc-
Confidence 43 2322 222 111222111111 11222223345555543 333333344322 211
Q ss_pred eeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccC
Q psy307 546 KKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHD 597 (1019)
Q Consensus 546 ~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~ 597 (1019)
...+.-. ..+.++++ ...||+..+.+ .|.||++.++++++++...+
T Consensus 222 ~~~i~W~---~~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 222 KSTIQWS---SAPQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred ccEEEcC---CchhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEEECCC
Confidence 1222221 23445555 34577776654 59999999999999987544
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0037 Score=44.42 Aligned_cols=38 Identities=32% Similarity=0.603 Sum_probs=33.8
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEe
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWE 364 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWd 364 (1019)
+++..+.+|...|.+++|++. +.++++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPD-GKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCC-CCEEEEecCCCeEEEcC
Confidence 456788899999999999995 68999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.6 Score=54.05 Aligned_cols=239 Identities=14% Similarity=0.101 Sum_probs=116.4
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec-ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY-GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~-gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
.|+++.|.++ ..-|+.|...|.|.||....+.. +. .-..+-..+.+.+-+ ..++
T Consensus 3 ~v~~vs~a~~-t~Elav~~~~GeVv~~k~~~n~~----~~~~~~~~~~~~~~~~~~--------------------~~~~ 57 (395)
T PF08596_consen 3 SVTHVSFAPE-TLELAVGLESGEVVLFKFGKNQN----YGNREQPPDLDYNFRRFS--------------------LNNS 57 (395)
T ss_dssp -EEEEEEETT-TTEEEEEETTS-EEEEEEEE----------------------S----------------------GGGS
T ss_pred eEEEEEecCC-CceEEEEccCCcEEEEEcccCCC----CCccCCCcccCccccccc--------------------ccCC
Confidence 5899999997 45688888999999998732211 11 000111111111100 0011
Q ss_pred cEEEEEccC--------CCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCC---------
Q psy307 416 RVKLWEVYK--------EHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRK--------- 478 (1019)
Q Consensus 416 ~I~IWDl~~--------~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~--------- 478 (1019)
.-.+-|+.. +-.+...+....+.|++++.|.-| .++.|..+|.+.|.|++....+..-....
T Consensus 58 ~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~ 136 (395)
T PF08596_consen 58 PGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSS 136 (395)
T ss_dssp S-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS---
T ss_pred CcceEEehhhCCcccccccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeecccccccccccccc
Confidence 112223211 123455566678999999998555 78888889999999999888776633211
Q ss_pred ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC---CEEEEEecCCeEEEEEccC----cccccceeEEec
Q psy307 479 VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN---KWLACQSMDNKILIFSALN----RFKLNRKKTFEG 551 (1019)
Q Consensus 479 ~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg---~~Lasgs~Dg~I~iwd~~~----~~~~~~~~~l~g 551 (1019)
.+.++.|.. +.+..|+ -.+++|+..|.+.+|.+.- ++..........
T Consensus 137 ~vt~ieF~v--------------------------m~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~ 190 (395)
T PF08596_consen 137 YVTSIEFSV--------------------------MTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTN 190 (395)
T ss_dssp -EEEEEEEE--------------------------EE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--
T ss_pred CeeEEEEEE--------------------------EecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeecccc
Confidence 233333321 1111222 4688899999999998752 111111111111
Q ss_pred cccccceEEEE-EcCC-C--------------------CEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcC--
Q psy307 552 HMVAGYACSLD-FSPD-M--------------------SYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHP-- 607 (1019)
Q Consensus 552 h~~~~~V~~v~-fspd-g--------------------~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp-- 607 (1019)
+ .+.+..+. |+.+ | .++++ ..+..++|+...+.+..++.....-.+..+.+-+
T Consensus 191 ~--~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv-vSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~ 267 (395)
T PF08596_consen 191 H--DSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV-VSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTI 267 (395)
T ss_dssp S--S----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE-E-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE
T ss_pred C--CCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE-EcccceEEEeCCCCcccceeeccccccceEEEEeec
Confidence 1 13344333 3211 1 13433 4466799999988887665543322334444531
Q ss_pred --CCCcEEEEEeCCCcEEEEeccce
Q psy307 608 --HEPSKVVTAGWDAATAKVQDANI 630 (1019)
Q Consensus 608 --~~~~~l~s~s~Dg~I~iwwd~~i 630 (1019)
.+...|++-..+|.|+++--...
T Consensus 268 ~~~~~~~Lv~l~~~G~i~i~SLP~L 292 (395)
T PF08596_consen 268 SRNGGYCLVCLFNNGSIRIYSLPSL 292 (395)
T ss_dssp -EEEEEEEEEEETTSEEEEEETTT-
T ss_pred ccCCceEEEEEECCCcEEEEECCCc
Confidence 23367888889999977755544
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.027 Score=69.40 Aligned_cols=134 Identities=14% Similarity=0.066 Sum_probs=87.1
Q ss_pred cCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEE
Q psy307 456 YDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIF 535 (1019)
Q Consensus 456 ~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iw 535 (1019)
....|.-.|+++|+.+..+..+..+....+.|+.... ...+ ...++|-.++.+..|
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~a----------------------qlt~--e~tflGls~n~lfri 557 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFA----------------------QLTN--EQTFLGLSDNSLFRI 557 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEeccccccc----------------------ccCC--CceEEEECCCceEEe
Confidence 4578999999999999999877655455555542200 0111 234567778999999
Q ss_pred EccCcc-cccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eeeeeccCCCEEEEEEcCCCCcEE
Q psy307 536 SALNRF-KLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKL-FKKWKAHDGVCISTLWHPHEPSKV 613 (1019)
Q Consensus 536 d~~~~~-~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~-l~~l~~h~~~V~sl~~sp~~~~~l 613 (1019)
|.+-.. ++. .............+|++-+.+| +||.|+.+|.||+||- .|+. ...+.+-..+|++|..+.||...|
T Consensus 558 DpR~~~~k~v-~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwil 634 (794)
T PF08553_consen 558 DPRLSGNKLV-DSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWIL 634 (794)
T ss_pred ccCCCCCcee-eccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEE
Confidence 998532 110 0011111122446777777776 6899999999999994 4433 334566678999999999995444
Q ss_pred EEE
Q psy307 614 VTA 616 (1019)
Q Consensus 614 ~s~ 616 (1019)
+||
T Consensus 635 aTc 637 (794)
T PF08553_consen 635 ATC 637 (794)
T ss_pred Eee
Confidence 444
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0057 Score=43.36 Aligned_cols=38 Identities=34% Similarity=0.607 Sum_probs=33.8
Q ss_pred eEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEE
Q psy307 427 RCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWD 464 (1019)
Q Consensus 427 ~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWD 464 (1019)
.+...+..|...|.++.|++.+..+++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45666778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.56 E-value=1.5 Score=47.28 Aligned_cols=176 Identities=11% Similarity=0.041 Sum_probs=102.9
Q ss_pred cEEEEEeCCC--cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE-EEcCCeEEEEECCCCceEEEEecCCceEE
Q psy307 406 HLLLSCSMDC--RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS-AGYDRYLKLWDTESGECISRFTSRKVAYC 482 (1019)
Q Consensus 406 ~~L~sgs~Dg--~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S-~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~ 482 (1019)
.++-+.+.-| .|+.+|+.++......--...----.|+.. +..|.- .=.++...+||..+-+.+.++.....-..
T Consensus 57 ~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWG 134 (264)
T PF05096_consen 57 TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWG 134 (264)
T ss_dssp EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--E
T ss_pred EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEEEEecCCcceE
Confidence 5666776665 688899854443322222222222223333 233333 33578899999999988888765433333
Q ss_pred EEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEE
Q psy307 483 VKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562 (1019)
Q Consensus 483 v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~ 562 (1019)
+ + .+|+.|+.+.....|.++|..+......+..-.....-..++.+.
T Consensus 135 L-------------------------------t--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE 181 (264)
T PF05096_consen 135 L-------------------------------T--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELE 181 (264)
T ss_dssp E-------------------------------E--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEE
T ss_pred E-------------------------------E--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEE
Confidence 2 2 367778887778899999987653333333222222223456666
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec------------c---CCCEEEEEEcCCCCcEEEEEe
Q psy307 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA------------H---DGVCISTLWHPHEPSKVVTAG 617 (1019)
Q Consensus 563 fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~------------h---~~~V~sl~~sp~~~~~l~s~s 617 (1019)
|- +|...|-.=....|...|..+|+....+.. + ....++++|.|....+++||-
T Consensus 182 ~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 182 YI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 65 677777666677888999999988776521 1 357899999998877777764
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.24 Score=52.06 Aligned_cols=140 Identities=16% Similarity=0.123 Sum_probs=96.2
Q ss_pred CCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEe
Q psy307 448 GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQS 527 (1019)
Q Consensus 448 g~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs 527 (1019)
..+++.||..+.+.--|..+|+.+..-..+..+.+-+. . -|++++.|+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~-----------------------------v---vgdfVV~GC 70 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAI-----------------------------V---VGDFVVLGC 70 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeE-----------------------------E---ECCEEEEEE
Confidence 34677888889999999999887765544433322111 0 367899999
Q ss_pred cCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcC
Q psy307 528 MDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHP 607 (1019)
Q Consensus 528 ~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp 607 (1019)
..|.+++.+..++...........- -......+++..+.+|+.|++.+..|.++...+.+.+...+.-.+-+..|
T Consensus 71 y~g~lYfl~~~tGs~~w~f~~~~~v-----k~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 71 YSGGLYFLCVKTGSQIWNFVILETV-----KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred ccCcEEEEEecchhheeeeeehhhh-----ccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecC
Confidence 9999999999988555433333222 12356678999999999999999999999988888776555444555566
Q ss_pred CCCcEEEEEeCCCcEEEE
Q psy307 608 HEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 608 ~~~~~l~s~s~Dg~I~iw 625 (1019)
-. ..+..+...|.+...
T Consensus 146 g~-~sly~a~t~G~vlav 162 (354)
T KOG4649|consen 146 GD-GSLYAAITAGAVLAV 162 (354)
T ss_pred CC-ceEEEEeccceEEEE
Confidence 22 234455555665443
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.52 E-value=1.4 Score=50.46 Aligned_cols=261 Identities=15% Similarity=0.168 Sum_probs=122.5
Q ss_pred CCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccE-eEEE--------EcCCCCceeEEEeecCCCC
Q psy307 335 TKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAV-RDIC--------FNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 335 ~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V-~~i~--------fspdg~~~vs~i~~~p~~~ 405 (1019)
...+....|+|+ |+.++-.. ++.|.+++...+.....+..| ...| ..+. |.. -.++.|+|++.
T Consensus 42 ~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~i~nG~~dwvyeEEv~~~-----~~~~~WSpd~~ 113 (353)
T PF00930_consen 42 PPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPGIYNGVPDWVYEEEVFDR-----RSAVWWSPDSK 113 (353)
T ss_dssp ETTBSEEEE-SS-STEEEEEE-TTEEEEESSTTSEEEESES---TTTEEESB--HHHHHHTSSS-----SBSEEE-TTSS
T ss_pred ccccccceeecC-CCeeEEEe-cCceEEEECCCCCeEEecccc-ceeEEcCccceecccccccc-----ccceEECCCCC
Confidence 668899999997 66665553 688999988544322223333 1111 1111 000 02345556555
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEccccc---cEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEE-E-E----ec
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQ---AVRDICFNNTGTNFISAGYDRYLKLWDTESGECIS-R-F----TS 476 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~---~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~-~-~----~~ 476 (1019)
.+++.--.+..|..+.+.. +..... .+..+.+-.-|..... -.+.|+|+.+++... . . ..
T Consensus 114 ~la~~~~d~~~v~~~~~~~-------~~~~~~~yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~~~~~~~~~~~~~~ 182 (353)
T PF00930_consen 114 YLAFLRFDEREVPEYPLPD-------YSPPDSQYPEVESIRYPKAGDPNPR----VSLFVVDLASGKTTELDPPNSLNPQ 182 (353)
T ss_dssp EEEEEEEE-TTS-EEEEEE-------ESSSTESS-EEEEEE--BTTS---E----EEEEEEESSSTCCCEE---HHHHTS
T ss_pred EEEEEEECCcCCceEEeec-------cCCccccCCcccccccCCCCCcCCc----eEEEEEECCCCcEEEeeeccccCCC
Confidence 6666666666666665511 111111 2333333222322211 135667777776421 1 1 12
Q ss_pred CCceEEEEEecCCCeeee---------------ccCC-Cce-eeeCCCCCc---ccEEEEc-CCC-CEEEEEecCCe--E
Q psy307 477 RKVAYCVKFHPDEDKQHL---------------DIPV-DMK-YIADPTMHS---MPAVTSS-PNN-KWLACQSMDNK--I 532 (1019)
Q Consensus 477 ~~~v~~v~~~p~~~~~~~---------------~~~~-~~~-~i~~~~~~~---i~~v~~s-pdg-~~Lasgs~Dg~--I 532 (1019)
...+..+.|.+++..+.+ +... ... ......... .....+. +++ .+|.....+|. |
T Consensus 183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl 262 (353)
T PF00930_consen 183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL 262 (353)
T ss_dssp SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence 345667778777763332 1100 000 011111111 2244444 554 45555567774 4
Q ss_pred EEEEccCcccccceeEEeccccccceE-EEEEcCCCCEEE-EEeCC----CeEEEEeCCCCceeeeeeccCCCEEEEEEc
Q psy307 533 LIFSALNRFKLNRKKTFEGHMVAGYAC-SLDFSPDMSYLI-SGDAD----GKCYIWDWKTTKLFKKWKAHDGVCISTLWH 606 (1019)
Q Consensus 533 ~iwd~~~~~~~~~~~~l~gh~~~~~V~-~v~fspdg~~La-sgs~D----G~I~IWDl~t~~~l~~l~~h~~~V~sl~~s 606 (1019)
.+++..++. ...+.... -.|. -+.++++++.|. ++..+ ..|+.-++..+..+..+....+....+.|+
T Consensus 263 y~~~~~~~~----~~~lT~G~--~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~S 336 (353)
T PF00930_consen 263 YLYDLDGGK----PRQLTSGD--WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFS 336 (353)
T ss_dssp EEEETTSSE----EEESS-SS--S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-
T ss_pred EEEcccccc----eeccccCc--eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEEC
Confidence 555555442 12222211 3353 467888877654 44442 256666777344555565544444789999
Q ss_pred CCCCcEEEEEeCCC
Q psy307 607 PHEPSKVVTAGWDA 620 (1019)
Q Consensus 607 p~~~~~l~s~s~Dg 620 (1019)
|++..++.+++.-+
T Consensus 337 pdg~y~v~~~s~~~ 350 (353)
T PF00930_consen 337 PDGKYYVDTYSGPD 350 (353)
T ss_dssp TTSSEEEEEEESSS
T ss_pred CCCCEEEEEEcCCC
Confidence 99977777776543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.02 Score=67.47 Aligned_cols=139 Identities=13% Similarity=0.126 Sum_probs=94.2
Q ss_pred EeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC
Q psy307 439 VRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP 518 (1019)
Q Consensus 439 V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp 518 (1019)
|.--+++..+++++.|+.-|.+.+++-.+++....-.. .....+..+++|+
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~-----------------------------~~~~~~~~~~vs~ 86 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE-----------------------------GATGITCVRSVSS 86 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhccccc-----------------------------CccceEEEEEecc
Confidence 33337777889999999999999999776654321111 0223445677888
Q ss_pred CCCEEEEEecCCeEEEEEccCcccccceeEEeccc-cccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeeee
Q psy307 519 NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHM-VAGYACSLDFSPDMSYLISGDADGKCYIWDWKTT----KLFKKW 593 (1019)
Q Consensus 519 dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~-~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~----~~l~~l 593 (1019)
+..++|+|+..|.|.++-+...........-..+. +...|++++|++|+..|.+|+..|+|..-.+.+. -..+.+
T Consensus 87 ~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~i 166 (726)
T KOG3621|consen 87 VEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEI 166 (726)
T ss_pred hhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhcccccee
Confidence 99999999999999999887643322111111111 2367999999999999999999999999888772 112233
Q ss_pred eccCCCEEEEEEc
Q psy307 594 KAHDGVCISTLWH 606 (1019)
Q Consensus 594 ~~h~~~V~sl~~s 606 (1019)
-.-++.|..+...
T Consensus 167 l~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 167 LSEDSEIVQLDYL 179 (726)
T ss_pred eccCcceEEeecc
Confidence 3334566666554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.47 Score=55.72 Aligned_cols=221 Identities=11% Similarity=0.056 Sum_probs=100.6
Q ss_pred cCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe
Q psy307 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS 412 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs 412 (1019)
...-....+.++|. ++.++. +.||.-.|+.....+. .. .+.-...+|.+.+ .+++-.
T Consensus 30 ~~~~~p~~ls~npn-gr~v~V-~g~geY~iyt~~~~r~-k~-----~G~g~~~vw~~~n---------------~yAv~~ 86 (443)
T PF04053_consen 30 SCEIYPQSLSHNPN-GRFVLV-CGDGEYEIYTALAWRN-KA-----FGSGLSFVWSSRN---------------RYAVLE 86 (443)
T ss_dssp E-SS--SEEEE-TT-SSEEEE-EETTEEEEEETTTTEE-EE-----EEE-SEEEE-TSS---------------EEEEE-
T ss_pred CCCcCCeeEEECCC-CCEEEE-EcCCEEEEEEccCCcc-cc-----cCceeEEEEecCc---------------cEEEEE
Confidence 34445788999995 777776 5677777777422221 11 1233456666644 466666
Q ss_pred CCCcEEEE-EccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCe
Q psy307 413 MDCRVKLW-EVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDK 491 (1019)
Q Consensus 413 ~Dg~I~IW-Dl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~ 491 (1019)
..++|.|+ ++.........+. ..+..|-. |..|...+. +.|.+||+.+++.++.+...
T Consensus 87 ~~~~I~I~kn~~~~~~k~i~~~---~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~-------------- 145 (443)
T PF04053_consen 87 SSSTIKIYKNFKNEVVKSIKLP---FSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS-------------- 145 (443)
T ss_dssp TTS-EEEEETTEE-TT-----S---S-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---------------
T ss_pred CCCeEEEEEcCccccceEEcCC---cccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--------------
Confidence 68889986 3321110011111 12222222 776666654 48999999999998887643
Q ss_pred eeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCc--------ccccceeEEeccccccceEEEEE
Q psy307 492 QHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNR--------FKLNRKKTFEGHMVAGYACSLDF 563 (1019)
Q Consensus 492 ~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~--------~~~~~~~~l~gh~~~~~V~~v~f 563 (1019)
.+..+.|+++|.+++..+. ..+.|++.... ........+... ...|.+.+|
T Consensus 146 ------------------~vk~V~Ws~~g~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~--~~~IkSg~W 204 (443)
T PF04053_consen 146 ------------------AVKYVIWSDDGELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEI--SERIKSGCW 204 (443)
T ss_dssp ------------------E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE---S--SEEEE
T ss_pred ------------------CCcEEEEECCCCEEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEe--cceeEEEEE
Confidence 2445677788888888874 46666654321 000011222211 134666777
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 564 SPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 564 spdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
..| -++.+. .. .|+-+ -.|. ..++..-+.++.=+...+.. ..+.....|+.+..+
T Consensus 205 ~~d-~fiYtT-~~-~lkYl--~~Ge-~~~i~~ld~~~yllgy~~~~-~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 205 VED-CFIYTT-SN-HLKYL--VNGE-TGIIAHLDKPLYLLGYLPKE-NRLYLIDRDGNVISY 259 (443)
T ss_dssp ETT-EEEEE--TT-EEEEE--ETTE-EEEEEE-SS--EEEEEETTT-TEEEEE-TT--EEEE
T ss_pred EcC-EEEEEc-CC-eEEEE--EcCC-cceEEEcCCceEEEEEEccC-CEEEEEECCCCEEEE
Confidence 554 233332 22 55542 2222 12222223455555566644 356666666666443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.058 Score=62.95 Aligned_cols=132 Identities=12% Similarity=0.133 Sum_probs=79.4
Q ss_pred ceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCc
Q psy307 327 QVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAH 406 (1019)
Q Consensus 327 ~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~ 406 (1019)
.+.++.+|.. .-+|+||+..++++...||...||-.....+....+..-.+.-..-.|+|||+ .
T Consensus 232 ~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~-------------~ 295 (425)
T COG0823 232 VILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGS-------------K 295 (425)
T ss_pred eeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCC-------------E
Confidence 3445556544 47899998888889999998777755433333333333333333455666664 6
Q ss_pred EEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcC-Ce--EEEEECCCCceEEEE
Q psy307 407 LLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD-RY--LKLWDTESGECISRF 474 (1019)
Q Consensus 407 ~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~D-g~--I~lWDl~t~~~i~~~ 474 (1019)
++++.+..|.-.||-....+.....+....+.-..-.|+|||++|+..+.. |. |.+.|+.++..++.+
T Consensus 296 ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 296 IVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL 366 (425)
T ss_pred EEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence 677777778766666544444444444333333366899999998877753 43 555565555433333
|
|
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.21 Score=57.43 Aligned_cols=150 Identities=9% Similarity=0.118 Sum_probs=97.5
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR 427 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~ 427 (1019)
.-+|.++.....++--|+ ..++.+..+.-|.. |+-+.+.|+... ..-.+..-+.|-.|..|.-||.+-.+.
T Consensus 346 nlil~~~~~~~~l~klDI-E~GKIVeEWk~~~d-i~mv~~t~d~K~-------~Ql~~e~TlvGLs~n~vfriDpRv~~~ 416 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDI-ERGKIVEEWKFEDD-INMVDITPDFKF-------AQLTSEQTLVGLSDNSVFRIDPRVQGK 416 (644)
T ss_pred ceEeeCCCCcCcceeeec-ccceeeeEeeccCC-cceeeccCCcch-------hcccccccEEeecCCceEEecccccCc
Confidence 334556666677777788 56677888877766 777778887641 111123446677889999999976655
Q ss_pred -EEEEEcccc----ccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCcee
Q psy307 428 -CVRTYYGHR----QAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKY 502 (1019)
Q Consensus 428 -~~~~l~~H~----~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~ 502 (1019)
.+....+|. ....|.+-..+| +|+.||.+|.|++||- .+.... .
T Consensus 417 ~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AK-----------------------------T 465 (644)
T KOG2395|consen 417 NKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAK-----------------------------T 465 (644)
T ss_pred ceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhh-----------------------------h
Confidence 333334443 234454444444 7999999999999995 332211 1
Q ss_pred eeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy307 503 IADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSAL 538 (1019)
Q Consensus 503 i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~ 538 (1019)
........|..+..+.+|++|++.+ +..+.+.++.
T Consensus 466 AlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 466 ALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 1122345677888899999987765 6777777664
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.26 Score=45.59 Aligned_cols=101 Identities=17% Similarity=0.257 Sum_probs=64.4
Q ss_pred eEEEEEcC---CCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC
Q psy307 338 ISAIRWFP---KSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD 414 (1019)
Q Consensus 338 V~~i~fsp---d~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D 414 (1019)
|++++++. ++.+-|++||.|..||||+- ...+..+.. ...|++++-...+ .++.+..+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~---~e~~~Ei~e-~~~v~~L~~~~~~---------------~F~Y~l~N 62 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG---DEIVAEITE-TDKVTSLCSLGGG---------------RFAYALAN 62 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC---CcEEEEEec-ccceEEEEEcCCC---------------EEEEEecC
Confidence 66676654 44578999999999999974 345555543 3456666655543 68889999
Q ss_pred CcEEEEEccCCCeEEEEEccccccEeEEEEec---CCC-EEEEEEcCCeEE
Q psy307 415 CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN---TGT-NFISAGYDRYLK 461 (1019)
Q Consensus 415 g~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp---dg~-~l~S~s~Dg~I~ 461 (1019)
|+|-+|+- ..+..+.-..|. +.++++.. ||. -|++|-.+|.|-
T Consensus 63 GTVGvY~~--~~RlWRiKSK~~--~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 63 GTVGVYDR--SQRLWRIKSKNQ--VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred CEEEEEeC--cceeeeeccCCC--eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 99999874 222222222222 55554432 232 488888888764
|
|
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.02 Score=66.61 Aligned_cols=90 Identities=14% Similarity=0.180 Sum_probs=71.0
Q ss_pred cEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEe-EEEEecCCCEEEEEEcCCe
Q psy307 381 AVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVR-DICFNNTGTNFISAGYDRY 459 (1019)
Q Consensus 381 ~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~-sl~fspdg~~l~S~s~Dg~ 459 (1019)
.|.-+.|+|.- .+||.+..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.++.|-.||+
T Consensus 22 ~i~~~ewnP~~--------------dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~ 85 (665)
T KOG4640|consen 22 NIKRIEWNPKM--------------DLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT 85 (665)
T ss_pred ceEEEEEcCcc--------------chhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCCEEEEEecCCe
Confidence 45556666655 689999999999988873 666777776777777 9999999999999999999
Q ss_pred EEEEECCCCceEEE--EecCCceEEEEEe
Q psy307 460 LKLWDTESGECISR--FTSRKVAYCVKFH 486 (1019)
Q Consensus 460 I~lWDl~t~~~i~~--~~~~~~v~~v~~~ 486 (1019)
|++.|++++..+.. +.....+.++-|.
T Consensus 86 I~L~Dve~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 86 IRLHDVEKGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred EEEEEccCCCceeccccccccchheeecc
Confidence 99999999988877 4444555555554
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.11 E-value=1.2 Score=51.00 Aligned_cols=237 Identities=15% Similarity=0.150 Sum_probs=114.4
Q ss_pred CCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcc-
Q psy307 356 MDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG- 434 (1019)
Q Consensus 356 ~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~- 434 (1019)
..+.+.|+|+.+ ++. ..+......+....|+|+|. .++-. .++.|.+++...+.....+..|
T Consensus 21 ~~~~y~i~d~~~-~~~-~~l~~~~~~~~~~~~sP~g~--------------~~~~v-~~~nly~~~~~~~~~~~lT~dg~ 83 (353)
T PF00930_consen 21 FKGDYYIYDIET-GEI-TPLTPPPPKLQDAKWSPDGK--------------YIAFV-RDNNLYLRDLATGQETQLTTDGE 83 (353)
T ss_dssp EEEEEEEEETTT-TEE-EESS-EETTBSEEEE-SSST--------------EEEEE-ETTEEEEESSTTSEEEESES--T
T ss_pred cceeEEEEecCC-Cce-EECcCCccccccceeecCCC--------------eeEEE-ecCceEEEECCCCCeEEeccccc
Confidence 346788999944 333 23332356788888999884 33333 3567888877433222122222
Q ss_pred ------c---------cccEeEEEEecCCCEEEEEEcC-CeEEEEE---CCCCc----eEEEEec---CCceEEEEEecC
Q psy307 435 ------H---------RQAVRDICFNNTGTNFISAGYD-RYLKLWD---TESGE----CISRFTS---RKVAYCVKFHPD 488 (1019)
Q Consensus 435 ------H---------~~~V~sl~fspdg~~l~S~s~D-g~I~lWD---l~t~~----~i~~~~~---~~~v~~v~~~p~ 488 (1019)
- -+.-..+.|||||++|+....| ..|+.+. ..... .+..+.- +.....+.
T Consensus 84 ~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~---- 159 (353)
T PF00930_consen 84 PGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVS---- 159 (353)
T ss_dssp TTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEE----
T ss_pred eeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceE----
Confidence 0 1123567899999999887765 3343332 22221 1222221 11101110
Q ss_pred CCeeeeccCCCce-eee-----CCCCCcccEEEEcCCCCEEEEEec--CC---eEEEEEccCcccccceeEEeccccccc
Q psy307 489 EDKQHLDIPVDMK-YIA-----DPTMHSMPAVTSSPNNKWLACQSM--DN---KILIFSALNRFKLNRKKTFEGHMVAGY 557 (1019)
Q Consensus 489 ~~~~~~~~~~~~~-~i~-----~~~~~~i~~v~~spdg~~Lasgs~--Dg---~I~iwd~~~~~~~~~~~~l~gh~~~~~ 557 (1019)
..+++...... .+. ......+..+.|.++++.|+..-. +. .+.++|..++.... +.... ..++
T Consensus 160 --l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~-~~~e~---~~~W 233 (353)
T PF00930_consen 160 --LFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV-VLEET---SDGW 233 (353)
T ss_dssp --EEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE-EEEEE---SSSS
T ss_pred --EEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE-EEEec---CCcc
Confidence 11112211111 111 234556788999999984444432 22 46666776542211 11111 1122
Q ss_pred e---EEEEEc-CCCC-EEEEEeCCCe--EEEEeCCCCceeeeeeccCCCEEE-EEEcCCCCcEEEEEeCCC
Q psy307 558 A---CSLDFS-PDMS-YLISGDADGK--CYIWDWKTTKLFKKWKAHDGVCIS-TLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 558 V---~~v~fs-pdg~-~Lasgs~DG~--I~IWDl~t~~~l~~l~~h~~~V~s-l~~sp~~~~~l~s~s~Dg 620 (1019)
| ..+.|. +++. +|.....||. |++++..++. ...+....-.|.. +.|.+++..+++++..++
T Consensus 234 v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~ 303 (353)
T PF00930_consen 234 VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDN 303 (353)
T ss_dssp SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGG
T ss_pred eeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCC
Confidence 2 244554 5554 5555557774 5556665555 3455545556655 568888766666766543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.09 E-value=1.2 Score=49.69 Aligned_cols=110 Identities=13% Similarity=0.041 Sum_probs=70.5
Q ss_pred CcccEEEEcCCCCEEEEEe-cCCeEEEEEccC--cccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC-eEEEEeC
Q psy307 509 HSMPAVTSSPNNKWLACQS-MDNKILIFSALN--RFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG-KCYIWDW 584 (1019)
Q Consensus 509 ~~i~~v~~spdg~~Lasgs-~Dg~I~iwd~~~--~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG-~I~IWDl 584 (1019)
..-+.++||||++.+.... ..+.|.-|++.. +...............+..-.++...+|.+.+++-.+| .|.+|+.
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p 242 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP 242 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence 3456799999997776664 457888887752 11111111111111235566788888998886555554 8999998
Q ss_pred CCCceeeeeeccCCCEEEEEEcC-CCCcEEEEEeCC
Q psy307 585 KTTKLFKKWKAHDGVCISTLWHP-HEPSKVVTAGWD 619 (1019)
Q Consensus 585 ~t~~~l~~l~~h~~~V~sl~~sp-~~~~~l~s~s~D 619 (1019)
. |+++..+......+++++|-- +...+++|+...
T Consensus 243 d-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 243 D-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred C-CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 8 999999987766778888753 333444554443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.07 E-value=1.1 Score=49.91 Aligned_cols=167 Identities=11% Similarity=0.086 Sum_probs=92.9
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCCCeEEEEEc----ccccc-EeEEEEecCCCEEEEEEcCCeEEEEECCCCceEE--EE
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYY----GHRQA-VRDICFNNTGTNFISAGYDRYLKLWDTESGECIS--RF 474 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~----~H~~~-V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~--~~ 474 (1019)
|..+.-+.+-|.||.+.-..+...++..+... .-..+ +..-++...+..++-.+++|.|+--|+....... .+
T Consensus 144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~ 223 (342)
T PF06433_consen 144 PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPW 223 (342)
T ss_dssp EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEE
T ss_pred ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcc
Confidence 33445688999999999999976666543321 11122 2233555566667778889998888876554221 11
Q ss_pred ecCC-ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec--------CC--eEEEEEccCcccc
Q psy307 475 TSRK-VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM--------DN--KILIFSALNRFKL 543 (1019)
Q Consensus 475 ~~~~-~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~--------Dg--~I~iwd~~~~~~~ 543 (1019)
..-. .-..-.|-| +...-+++++..+.|.+-.. |+ .|-+||+.++.++
T Consensus 224 ~~~t~~e~~~~WrP---------------------GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv 282 (342)
T PF06433_consen 224 SLLTDAEKADGWRP---------------------GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRV 282 (342)
T ss_dssp ESS-HHHHHTTEEE----------------------SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEE
T ss_pred cccCccccccCcCC---------------------cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEE
Confidence 1000 000001222 22334566665544444321 22 5777888887444
Q ss_pred cceeEEeccccccceEEEEEcCCCC-EEEEE-eCCCeEEEEeCCCCceeeeeec
Q psy307 544 NRKKTFEGHMVAGYACSLDFSPDMS-YLISG-DADGKCYIWDWKTTKLFKKWKA 595 (1019)
Q Consensus 544 ~~~~~l~gh~~~~~V~~v~fspdg~-~Lasg-s~DG~I~IWDl~t~~~l~~l~~ 595 (1019)
..+... ..+.+|+.+.|.+ +|++. ..++.|.+||..+|+.++++..
T Consensus 283 ---~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 283 ---ARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ---EEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ---EEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 333321 2366888888776 55544 4579999999999999998874
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.05 E-value=4.3 Score=47.49 Aligned_cols=241 Identities=8% Similarity=0.029 Sum_probs=115.5
Q ss_pred CeEEEEEcCCCCcEEEEeeCCC----eEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe
Q psy307 337 GISAIRWFPKSAHLLLSCSMDC----RVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS 412 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg----~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs 412 (1019)
.+...+++|++..++++-+..| .|++.|+.++......+.... ...+.|.+++. .++++..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~-------------~~~y~~~ 189 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGK-------------GFFYTRF 189 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSS-------------EEEEEEC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCC-------------EEEEEEe
Confidence 3446788997555555545544 499999955433222222211 12277777774 3344432
Q ss_pred C----------CCcEEEEEccCCCeE-EEEEcccccc--EeEEEEecCCCEEEEEEcC----CeEEEEECCCC-----ce
Q psy307 413 M----------DCRVKLWEVYKEHRC-VRTYYGHRQA--VRDICFNNTGTNFISAGYD----RYLKLWDTESG-----EC 470 (1019)
Q Consensus 413 ~----------Dg~I~IWDl~~~~~~-~~~l~~H~~~--V~sl~fspdg~~l~S~s~D----g~I~lWDl~t~-----~~ 470 (1019)
. ...|+.|.+.+.... ...+...... ...+..++++++++..+.. ..+.+.|+..+ ..
T Consensus 190 ~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~ 269 (414)
T PF02897_consen 190 DEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKP 269 (414)
T ss_dssp STTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SE
T ss_pred CcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCc
Confidence 2 234788887544332 3444443332 5678899999986654432 34777777664 11
Q ss_pred EEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEe---cCCeEEEEEccCccccccee
Q psy307 471 ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQS---MDNKILIFSALNRFKLNRKK 547 (1019)
Q Consensus 471 i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs---~Dg~I~iwd~~~~~~~~~~~ 547 (1019)
.........+. ..+. +.++.+++... .++.|...++.+........
T Consensus 270 ~~l~~~~~~~~------------------------------~~v~-~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~ 318 (414)
T PF02897_consen 270 KLLSPREDGVE------------------------------YYVD-HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWT 318 (414)
T ss_dssp EEEEESSSS-E------------------------------EEEE-EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEE
T ss_pred EEEeCCCCceE------------------------------EEEE-ccCCEEEEeeCCCCCCcEEEEeccccccccccee
Confidence 11111111110 1111 11333333322 23567667776553222222
Q ss_pred EEeccccccceEEEEEcCCCCEE-EEEeCCC--eEEEEeCCCCceeeeeec-cCCCEEEEEEcCCCCcEEEEEeCCCcEE
Q psy307 548 TFEGHMVAGYACSLDFSPDMSYL-ISGDADG--KCYIWDWKTTKLFKKWKA-HDGVCISTLWHPHEPSKVVTAGWDAATA 623 (1019)
Q Consensus 548 ~l~gh~~~~~V~~v~fspdg~~L-asgs~DG--~I~IWDl~t~~~l~~l~~-h~~~V~sl~~sp~~~~~l~s~s~Dg~I~ 623 (1019)
.+..+.....+..+.. .+.+| +....++ .|+++++..+.....+.. -.+.|..+...++++.+.++.+.--+--
T Consensus 319 ~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~ 396 (414)
T PF02897_consen 319 VLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPP 396 (414)
T ss_dssp EEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEE
T ss_pred EEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCC
Confidence 4444443234555544 34444 4444444 689999984444444432 3345666666666655666655444333
Q ss_pred EE
Q psy307 624 KV 625 (1019)
Q Consensus 624 iw 625 (1019)
.+
T Consensus 397 ~~ 398 (414)
T PF02897_consen 397 TV 398 (414)
T ss_dssp EE
T ss_pred EE
Confidence 33
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=96.03 E-value=6.3 Score=49.13 Aligned_cols=106 Identities=9% Similarity=0.109 Sum_probs=73.4
Q ss_pred EEEEcCC-CCEEEEEec----------CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEE
Q psy307 513 AVTSSPN-NKWLACQSM----------DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYI 581 (1019)
Q Consensus 513 ~v~~spd-g~~Lasgs~----------Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~I 581 (1019)
++.|..| +.++++|+. .|.|.+|...... .++....+...+.+.++.. -+|++||.- ...|++
T Consensus 779 s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~---~L~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrL 852 (1096)
T KOG1897|consen 779 SCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN---SLELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRL 852 (1096)
T ss_pred eeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC---ceeeeeeeeeccceeehhh-hCCeEEEec--CcEEEE
Confidence 4446656 777887753 5788888887643 3344444444455555432 277777754 457999
Q ss_pred EeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 582 WDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 582 WDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
|+|.+.+.++.-..|..++..+...-.+ ..++.|..-+++.+.
T Consensus 853 ye~t~~~eLr~e~~~~~~~~aL~l~v~g-deI~VgDlm~Sitll 895 (1096)
T KOG1897|consen 853 YEWTTERELRIECNISNPIIALDLQVKG-DEIAVGDLMRSITLL 895 (1096)
T ss_pred EEccccceehhhhcccCCeEEEEEEecC-cEEEEeeccceEEEE
Confidence 9999998888777788888888887777 478888877777654
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.99 E-value=3.6 Score=46.00 Aligned_cols=269 Identities=12% Similarity=0.095 Sum_probs=144.7
Q ss_pred CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEE--Ecc-
Q psy307 358 CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRT--YYG- 434 (1019)
Q Consensus 358 g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~--l~~- 434 (1019)
+.|.|.|. ..++.+..+.. +-.-.+..+|+++.+..+-.|.. .+.-|-..-.|.+||.. +-.+... +..
T Consensus 17 ~rv~viD~-d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~s----R~~rG~RtDvv~~~D~~-TL~~~~EI~iP~k 88 (342)
T PF06433_consen 17 SRVYVIDA-DSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYS----RGTRGERTDVVEIWDTQ-TLSPTGEIEIPPK 88 (342)
T ss_dssp EEEEEEET-TTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEE----ETTEEEEEEEEEEEETT-TTEEEEEEEETTS
T ss_pred ceEEEEEC-CCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEe----ccccccceeEEEEEecC-cCcccceEecCCc
Confidence 57888887 44555555443 22334667899875544433321 22235556679999984 3333332 221
Q ss_pred cc----ccEeEEEEecCCCEEEEEEc--CCeEEEEECCCCceEEEEecCCceE--------EEEEecCCCeeeeccCCCc
Q psy307 435 HR----QAVRDICFNNTGTNFISAGY--DRYLKLWDTESGECISRFTSRKVAY--------CVKFHPDEDKQHLDIPVDM 500 (1019)
Q Consensus 435 H~----~~V~sl~fspdg~~l~S~s~--Dg~I~lWDl~t~~~i~~~~~~~~v~--------~v~~~p~~~~~~~~~~~~~ 500 (1019)
|. .....++++.||++++.... -..|.|.|+..++.+..+....... -...+.||....+......
T Consensus 89 ~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 89 PRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADG 168 (342)
T ss_dssp -B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTS
T ss_pred chheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCC
Confidence 11 12234588899998776543 4679999999998888776544221 2233445555444333222
Q ss_pred ee------eeCCCCCc-ccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEecc---------ccccceEEEEEc
Q psy307 501 KY------IADPTMHS-MPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGH---------MVAGYACSLDFS 564 (1019)
Q Consensus 501 ~~------i~~~~~~~-i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh---------~~~~~V~~v~fs 564 (1019)
+. +....... ...-++...+..++.-+.+|.|+-.|+..... .....+.-- ..++ -.-++++
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~-~~~~~~~~~t~~e~~~~WrPGG-~Q~~A~~ 246 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA-KFGKPWSLLTDAEKADGWRPGG-WQLIAYH 246 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE-EEEEEEESS-HHHHHTTEEE-S-SS-EEEE
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc-cccCcccccCccccccCcCCcc-eeeeeec
Confidence 11 12222221 22333444555566678899999988875421 112222110 0111 1236777
Q ss_pred CCCCEEEEEe---CCC-------eEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEe-CCCcEEEEeccceeee
Q psy307 565 PDMSYLISGD---ADG-------KCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAG-WDAATAKVQDANIVKI 633 (1019)
Q Consensus 565 pdg~~Lasgs---~DG-------~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s-~Dg~I~iwwd~~i~ki 633 (1019)
+....|...- .+| .|.++|+++++.+..+... .++.+++.+.+..-+|++.+ .++.+ .++|...++.
T Consensus 247 ~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l-~v~D~~tGk~ 324 (342)
T PF06433_consen 247 AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTL-DVYDAATGKL 324 (342)
T ss_dssp TTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEE-EEEETTT--E
T ss_pred cccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeE-EEEeCcCCcE
Confidence 6555444321 222 4888999999999998742 35778999988765676554 56777 4456666666
Q ss_pred eeecc
Q psy307 634 AVEME 638 (1019)
Q Consensus 634 ~~e~~ 638 (1019)
.....
T Consensus 325 ~~~~~ 329 (342)
T PF06433_consen 325 VRSIE 329 (342)
T ss_dssp EEEE-
T ss_pred Eeehh
Confidence 54443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.027 Score=65.62 Aligned_cols=92 Identities=20% Similarity=0.284 Sum_probs=70.6
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEe-EEEEcCCCCceeEEEeecCCCCcEEEEEeCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVR-DICFNNTGTNFISAIRWFPKSAHLLLSCSMD 414 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~-~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D 414 (1019)
-.|.-+.|+|. -.++|++..+|.|.+..++ .+.+.++.-|...|+ +++|.||| ++|+.|-.|
T Consensus 21 ~~i~~~ewnP~-~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DG--------------kllaVg~kd 83 (665)
T KOG4640|consen 21 INIKRIEWNPK-MDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDG--------------KLLAVGFKD 83 (665)
T ss_pred cceEEEEEcCc-cchhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCC--------------CEEEEEecC
Confidence 36778999995 8899999999999999884 455777777777777 99999999 799999999
Q ss_pred CcEEEEEccCCCeEEEEEccccccEeEEEE
Q psy307 415 CRVKLWEVYKEHRCVRTYYGHRQAVRDICF 444 (1019)
Q Consensus 415 g~I~IWDl~~~~~~~~~l~~H~~~V~sl~f 444 (1019)
|+|++.|+..+.........-...|.++.|
T Consensus 84 G~I~L~Dve~~~~l~~~~~s~e~~is~~~w 113 (665)
T KOG4640|consen 84 GTIRLHDVEKGGRLVSFLFSVETDISKGIW 113 (665)
T ss_pred CeEEEEEccCCCceeccccccccchheeec
Confidence 999999996655444333333334444444
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=95.87 E-value=2.1 Score=51.36 Aligned_cols=65 Identities=17% Similarity=0.040 Sum_probs=40.5
Q ss_pred cCCeEEEEEccCcccccceeEEecccc----ccce--EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec
Q psy307 528 MDNKILIFSALNRFKLNRKKTFEGHMV----AGYA--CSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA 595 (1019)
Q Consensus 528 ~Dg~I~iwd~~~~~~~~~~~~l~gh~~----~~~V--~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~ 595 (1019)
.+|.+.-+|+.++..+...... .+.. .... ..+.. .+.+|+.|+.||.|+.+|.++|+.+.+.+.
T Consensus 364 ~~G~l~AlD~~tG~~~W~~~~~-~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 364 GKGGLAALDPKTGKVVWEKREG-TIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CceEEEEEeCCCCcEeeEeeCC-ccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 3577888888777544322211 0000 0001 11222 567888999999999999999999888765
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=95.72 E-value=5.6 Score=46.19 Aligned_cols=91 Identities=11% Similarity=0.205 Sum_probs=58.3
Q ss_pred eeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccc--cceEEEEEcCC-------------
Q psy307 502 YIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVA--GYACSLDFSPD------------- 566 (1019)
Q Consensus 502 ~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~--~~V~~v~fspd------------- 566 (1019)
.........+.+++.+|++++.|+...=|.|.++|+..+..+ +.++|...+ +++....-...
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vv---rmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~ 377 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVV---RMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSR 377 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhh---hhhccCccceEEEEEeecccccccccccccCCCCc
Confidence 333344556789999999999999877899999999887433 444444322 11111000000
Q ss_pred -CCE-EEEEeCCCeEEEEeCCCCceeeeeec
Q psy307 567 -MSY-LISGDADGKCYIWDWKTTKLFKKWKA 595 (1019)
Q Consensus 567 -g~~-Lasgs~DG~I~IWDl~t~~~l~~l~~ 595 (1019)
..+ ++-.-.-|.|.||.+++|..+..+..
T Consensus 378 ~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 378 FALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 112 33455678999999999988877764
|
|
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.043 Score=67.55 Aligned_cols=99 Identities=19% Similarity=0.256 Sum_probs=76.4
Q ss_pred CCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCC
Q psy307 519 NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDG 598 (1019)
Q Consensus 519 dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~ 598 (1019)
.+.+++.|+..|.+..+|....-. ....+....++|++++|+.+|++++.|-.+|.|.+||...+++++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~----~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG----PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc----hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 456789999999999999876411 1223444458899999999999999999999999999999999998876665
Q ss_pred CEE---EEEEcCCCCcEEEEEeCCCcE
Q psy307 599 VCI---STLWHPHEPSKVVTAGWDAAT 622 (1019)
Q Consensus 599 ~V~---sl~~sp~~~~~l~s~s~Dg~I 622 (1019)
+.+ .+.|..++ +.++++...|.+
T Consensus 174 p~t~vi~v~~t~~n-S~llt~D~~Gsf 199 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQN-SKLLTSDTGGSF 199 (1206)
T ss_pred ccceEEEEEEeCCC-cEEEEccCCCce
Confidence 444 44555555 578888888763
|
|
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.12 Score=59.30 Aligned_cols=149 Identities=12% Similarity=0.108 Sum_probs=96.0
Q ss_pred CCCE-EEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEE
Q psy307 447 TGTN-FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLAC 525 (1019)
Q Consensus 447 dg~~-l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Las 525 (1019)
+.++ +.++.....|+-.|++.|+.+..+..+..+.-+.+.|+.....+ .+.+ -+.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql----------------------~~e~--Tlv 399 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQL----------------------TSEQ--TLV 399 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcc----------------------cccc--cEE
Confidence 4444 44555667789999999999999998887888888887542211 1122 235
Q ss_pred EecCCeEEEEEccCcccccceeEEeccc--cccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eeeeeccCCCEEE
Q psy307 526 QSMDNKILIFSALNRFKLNRKKTFEGHM--VAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKL-FKKWKAHDGVCIS 602 (1019)
Q Consensus 526 gs~Dg~I~iwd~~~~~~~~~~~~l~gh~--~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~-l~~l~~h~~~V~s 602 (1019)
|-.|+.|.-||.+-... ..+..-.+|. ......|.+-..+| +++.||.+|.|++||- .+.. -..+++-..+|..
T Consensus 400 GLs~n~vfriDpRv~~~-~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~h 476 (644)
T KOG2395|consen 400 GLSDNSVFRIDPRVQGK-NKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKH 476 (644)
T ss_pred eecCCceEEecccccCc-ceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceee
Confidence 66788999999873322 1222223332 11224455544455 7999999999999996 5443 4456778889999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEE
Q psy307 603 TLWHPHEPSKVVTAGWDAATAK 624 (1019)
Q Consensus 603 l~~sp~~~~~l~s~s~Dg~I~i 624 (1019)
+..+.+|..+|+|| +..+.+
T Consensus 477 VdvtadGKwil~Tc--~tyLlL 496 (644)
T KOG2395|consen 477 VDVTADGKWILATC--KTYLLL 496 (644)
T ss_pred EEeeccCcEEEEec--ccEEEE
Confidence 99999995434443 344434
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=95.34 E-value=3.4 Score=46.64 Aligned_cols=107 Identities=17% Similarity=0.212 Sum_probs=66.6
Q ss_pred ccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCC-Cce
Q psy307 511 MPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKT-TKL 589 (1019)
Q Consensus 511 i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t-~~~ 589 (1019)
|.+++.- +| .|+++. ++.|.+|++.....+.....+..+ ..++++... +.+++.|+....+.++.+.. ...
T Consensus 91 V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~---~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~ 162 (321)
T PF03178_consen 91 VTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSP---FYITSLSVF--KNYILVGDAMKSVSLLRYDEENNK 162 (321)
T ss_dssp EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BS---SSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-
T ss_pred ceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecce---EEEEEEecc--ccEEEEEEcccCEEEEEEEccCCE
Confidence 4444433 33 454444 689999999876523333333222 456666654 66999999888888886543 232
Q ss_pred eeeeec--cCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 590 FKKWKA--HDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 590 l~~l~~--h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
+..+.. ....++++.+-+++ ..++.+..+|.+.++.
T Consensus 163 l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~ 200 (321)
T PF03178_consen 163 LILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLR 200 (321)
T ss_dssp EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEE
T ss_pred EEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEE
Confidence 333322 23468888888777 4899999999997763
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=2.4 Score=51.81 Aligned_cols=208 Identities=12% Similarity=0.106 Sum_probs=101.4
Q ss_pred ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc
Q psy307 377 GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY 456 (1019)
Q Consensus 377 gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~ 456 (1019)
+....+.+.+++|+|..++....... ...|+.-.||-...++.......+. ....-.|+|+|+.+++.+.
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~--------~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~d 416 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGR--------GAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVD 416 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecC--------CCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEec
Confidence 33346788889999863322211000 1124333444332233332323332 3667799999998888764
Q ss_pred C-CeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEE-
Q psy307 457 D-RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILI- 534 (1019)
Q Consensus 457 D-g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~i- 534 (1019)
. ..+++.+-.....+..+.... ..........|..+.|||||..++... +|+|.+
T Consensus 417 g~~~~~v~~~~~~gql~~~~vd~----------------------ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va 473 (591)
T PRK13616 417 GNTVVRVIRDPATGQLARTPVDA----------------------SAVASRVPGPISELQLSRDGVRAAMII-GGKVYLA 473 (591)
T ss_pred CcceEEEeccCCCceEEEEeccC----------------------chhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEE
Confidence 3 223333321111111111000 000001234688899999999888776 577777
Q ss_pred --EEccCcc-cccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCC-Cceeeeeec--cCCCEEEEEEcCC
Q psy307 535 --FSALNRF-KLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKT-TKLFKKWKA--HDGVCISTLWHPH 608 (1019)
Q Consensus 535 --wd~~~~~-~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t-~~~l~~l~~--h~~~V~sl~~sp~ 608 (1019)
-....+. .+.....+.. .....+.++.|.+++.++ .+..++.-.+|.+.- |.....+.+ ...++.+++-++.
T Consensus 474 ~Vvr~~~G~~~l~~~~~l~~-~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~ 551 (591)
T PRK13616 474 VVEQTEDGQYALTNPREVGP-GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS 551 (591)
T ss_pred EEEeCCCCceeecccEEeec-ccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc
Confidence 3322331 1111111211 111335789999999865 445555455555432 222112232 2456777776652
Q ss_pred CCcEEEEEeCCCcE
Q psy307 609 EPSKVVTAGWDAAT 622 (1019)
Q Consensus 609 ~~~~l~s~s~Dg~I 622 (1019)
.++.+..+|.+
T Consensus 552 ---~iyv~~~~g~~ 562 (591)
T PRK13616 552 ---TVYVTDARAVL 562 (591)
T ss_pred ---eEEEEcCCceE
Confidence 35555556533
|
|
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.12 Score=63.79 Aligned_cols=111 Identities=14% Similarity=0.251 Sum_probs=75.6
Q ss_pred CCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC
Q psy307 335 TKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD 414 (1019)
Q Consensus 335 ~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D 414 (1019)
..+|.+.+. -+..++.|+..|.|-..|+..+-.....-..-.++|++++|+.+| .+++.|-.+
T Consensus 89 ~~~v~s~a~---~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg--------------~~l~~G~~~ 151 (1206)
T KOG2079|consen 89 AAGVISSAI---VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDG--------------SLLLAGLGD 151 (1206)
T ss_pred Ccceeeeee---eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCC--------------ceeccccCC
Confidence 344444443 245688888889998888744322222223345789999999999 689999999
Q ss_pred CcEEEEEccCCCeEEEEEccccccEeEE---EEecCCCEEEEEEcCCeEEEEEC
Q psy307 415 CRVKLWEVYKEHRCVRTYYGHRQAVRDI---CFNNTGTNFISAGYDRYLKLWDT 465 (1019)
Q Consensus 415 g~I~IWDl~~~~~~~~~l~~H~~~V~sl---~fspdg~~l~S~s~Dg~I~lWDl 465 (1019)
|.|.+||+ ..+..++.+..|..++.++ .+..++..++++...|. +|.+
T Consensus 152 G~V~v~D~-~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 152 GHVTVWDM-HRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CcEEEEEc-cCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 99999999 6667777776665554443 44455667777777775 5543
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.04 E-value=8.1 Score=43.83 Aligned_cols=61 Identities=20% Similarity=0.305 Sum_probs=38.6
Q ss_pred CCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEE
Q psy307 519 NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCY 580 (1019)
Q Consensus 519 dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~ 580 (1019)
.|.+|++.-..+.|....+...........+... ....+..+++.|||.+.++.+.+|.|+
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGG-FGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTT-SSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEcccc-CCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4556666666678888887644333223333222 123688999999999888888888764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=2.2 Score=52.15 Aligned_cols=206 Identities=9% Similarity=0.052 Sum_probs=100.9
Q ss_pred CCCCeEEEEEcCCCCcEEEEee-----CCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEE
Q psy307 334 HTKGISAIRWFPKSAHLLLSCS-----MDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs-----~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L 408 (1019)
....+...+++|++....++.. .|+.-.||-...++.......+. ....-.|+|+|..+.... +.....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~----dg~~~~ 421 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVV----DGNTVV 421 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEe----cCcceE
Confidence 3346889999998655555542 34444444332222222223333 378888999985332221 111111
Q ss_pred EE--EeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEE---EECCCCceEEEEecCCceEEE
Q psy307 409 LS--CSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKL---WDTESGECISRFTSRKVAYCV 483 (1019)
Q Consensus 409 ~s--gs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~l---WDl~t~~~i~~~~~~~~v~~v 483 (1019)
.. ....+.+.+.++ ..+.... ...+.|..+.|||||.+++... ++.|.+ -....|. ..+..
T Consensus 422 ~v~~~~~~gql~~~~v-d~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~------- 487 (591)
T PRK13616 422 RVIRDPATGQLARTPV-DASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTN------- 487 (591)
T ss_pred EEeccCCCceEEEEec-cCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecc-------
Confidence 11 123345554455 2222222 3456799999999999988765 455554 2222222 11100
Q ss_pred EEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEE
Q psy307 484 KFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDF 563 (1019)
Q Consensus 484 ~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~f 563 (1019)
...+.......+..+.|..++.++ ++..++...+|.+.-..... ..+.+......+..++-
T Consensus 488 ----------------~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~--~~~~~~n~~~~v~~vaa 548 (591)
T PRK13616 488 ----------------PREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNS--DALPSRNLSAPVVAVAA 548 (591)
T ss_pred ----------------cEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccc--cccCCCCccCceEEEec
Confidence 001111112234668898888855 55555544555443111111 11233222345666666
Q ss_pred cCCCCEEEEEeCCCeEE
Q psy307 564 SPDMSYLISGDADGKCY 580 (1019)
Q Consensus 564 spdg~~Lasgs~DG~I~ 580 (1019)
+++ -|+.++.+|.+.
T Consensus 549 ~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 549 SPS--TVYVTDARAVLQ 563 (591)
T ss_pred CCc--eEEEEcCCceEE
Confidence 653 455666676443
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=94.80 E-value=10 Score=43.75 Aligned_cols=202 Identities=13% Similarity=0.165 Sum_probs=84.1
Q ss_pred CcEEEEee-CCCeEEEEecCCC---cEEEEEecc---cC----ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCc
Q psy307 348 AHLLLSCS-MDCRVKLWEVYKE---RRCVRTYYG---HR----QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCR 416 (1019)
Q Consensus 348 g~lLaSgs-~Dg~I~IWdl~~~---~~~~~~~~g---h~----~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~ 416 (1019)
.++|+..+ ..+.|.|.|+..+ .++.+++.. +. ..-..+...|+|.-+|+++.= +.+ ..-|-
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd-~~G-------~g~Gg 158 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGD-ADG-------NGPGG 158 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEE-TTS--------S--E
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccC-CCC-------CCCCc
Confidence 44555555 7899999999632 233444432 11 122233344666444444321 110 11133
Q ss_pred EEEEEccCCCeEEEEEccc---cccEeEEEEecCCCEEEEEE--------------------cCCeEEEEECCCCceEEE
Q psy307 417 VKLWEVYKEHRCVRTYYGH---RQAVRDICFNNTGTNFISAG--------------------YDRYLKLWDTESGECISR 473 (1019)
Q Consensus 417 I~IWDl~~~~~~~~~l~~H---~~~V~sl~fspdg~~l~S~s--------------------~Dg~I~lWDl~t~~~i~~ 473 (1019)
+.+.|- .+-......... ...-..+.|.|..+.++|+. +..++.+||+.+.+.+++
T Consensus 159 f~llD~-~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~ 237 (461)
T PF05694_consen 159 FVLLDG-ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQT 237 (461)
T ss_dssp EEEE-T-TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEE
T ss_pred EEEEcC-ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeE
Confidence 444443 112222222221 22334557778777777765 346899999999999999
Q ss_pred EecC---CceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCE-EEEEecCCeEEEEEc-cCc-cccccee
Q psy307 474 FTSR---KVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKW-LACQSMDNKILIFSA-LNR-FKLNRKK 547 (1019)
Q Consensus 474 ~~~~---~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~-Lasgs~Dg~I~iwd~-~~~-~~~~~~~ 547 (1019)
+... ..+..+.|..+. +..+ ++.+...++|..|-- .++ ...+.+.
T Consensus 238 idLg~~g~~pLEvRflH~P-----------------------------~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi 288 (461)
T PF05694_consen 238 IDLGEEGQMPLEVRFLHDP-----------------------------DANYGFVGCALSSSIWRFYKDDDGEWAAEKVI 288 (461)
T ss_dssp EES-TTEEEEEEEEE-SST-----------------------------T--EEEEEEE--EEEEEEEE-ETTEEEEEEEE
T ss_pred EecCCCCCceEEEEecCCC-----------------------------CccceEEEEeccceEEEEEEcCCCCeeeeEEE
Confidence 9875 245556654332 2222 222223334444332 211 1111111
Q ss_pred EEeccc---------------cccceEEEEEcCCCCEEEEEe-CCCeEEEEeCCCC
Q psy307 548 TFEGHM---------------VAGYACSLDFSPDMSYLISGD-ADGKCYIWDWKTT 587 (1019)
Q Consensus 548 ~l~gh~---------------~~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl~t~ 587 (1019)
.+.... ...-|+.|.+|.|.++|...+ .+|.|+.||+...
T Consensus 289 ~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 289 DIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred ECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 111100 024578999999999987665 6899999999763
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.78 E-value=1.9 Score=46.74 Aligned_cols=165 Identities=10% Similarity=0.055 Sum_probs=106.2
Q ss_pred EccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcc
Q psy307 432 YYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSM 511 (1019)
Q Consensus 432 l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i 511 (1019)
..+-...|.++.|+|+.+.|++......-.||=...|+.++++.... -+..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-----------------------------~~Dp 131 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-----------------------------FSDP 131 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-----------------------------cCCh
Confidence 34555669999999999999999888888888778888888876532 1222
Q ss_pred cEEEEcCCCCEEEEEecCCeEEEEEccCccccccee----EEecccc-ccceEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy307 512 PAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKK----TFEGHMV-AGYACSLDFSPDMSYLISGDADGKCYIWDWKT 586 (1019)
Q Consensus 512 ~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~----~l~gh~~-~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t 586 (1019)
..+.+..+|+++++--.++.+.++.+.........+ .+..... ....-.++|+|....|..+-.-.-+.||.+..
T Consensus 132 E~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 132 ETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred hHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 345566677777777778888887765432211111 1111110 13356899999988888887777777777653
Q ss_pred Cc-e--eeeeeccC-------CCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 587 TK-L--FKKWKAHD-------GVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 587 ~~-~--l~~l~~h~-------~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+. . ++....+. ..|.++.|++..+.+++-+..++.+..+
T Consensus 212 ~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Ev 260 (316)
T COG3204 212 SPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEV 260 (316)
T ss_pred CCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEE
Confidence 32 1 11111121 2467888888776777777777666443
|
|
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.078 Score=54.89 Aligned_cols=106 Identities=16% Similarity=0.188 Sum_probs=59.4
Q ss_pred CCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC
Q psy307 347 SAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH 426 (1019)
Q Consensus 347 ~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~ 426 (1019)
.+.-++.|+.+|.|.+|+....+.....+..-...|.++. |.+ ....+..+++.||.|+.|++ ...
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I--p~~-----------~~~~~~c~~~~dg~ir~~n~-~p~ 134 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI--PNG-----------RDSSLGCVGAQDGRIRACNI-KPN 134 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceecc--ccc-----------cccceeEEeccCCceeeecc-ccC
Confidence 3556899999999999998533222222222222222221 111 12258899999999999999 555
Q ss_pred eEEEEEcccc-ccEeEEEEecCCCEEEEE--EcCCeEEEEECC
Q psy307 427 RCVRTYYGHR-QAVRDICFNNTGTNFISA--GYDRYLKLWDTE 466 (1019)
Q Consensus 427 ~~~~~l~~H~-~~V~sl~fspdg~~l~S~--s~Dg~I~lWDl~ 466 (1019)
+.+.....|. .++.....+..++.+.++ |.|..++.|++.
T Consensus 135 k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 135 KVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 5556666665 333333333334444444 445555555543
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.71 E-value=6.1 Score=44.19 Aligned_cols=193 Identities=14% Similarity=0.195 Sum_probs=97.6
Q ss_pred eecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCC
Q psy307 399 RWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRK 478 (1019)
Q Consensus 399 ~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~ 478 (1019)
.|.+..+.++.+--..+.|.-|+............+. +.++..-..+..|+++. .-+.+++.+++..+..+....
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~---~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGG---FSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCC---cccceeecCCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence 4666666777777788888888875443333333322 23333333444555443 335667766555532221100
Q ss_pred ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec-----------CCeEEEEEccCccccccee
Q psy307 479 VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM-----------DNKILIFSALNRFKLNRKK 547 (1019)
Q Consensus 479 ~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~-----------Dg~I~iwd~~~~~~~~~~~ 547 (1019)
........+.+.+.|+|.+.++... -|.|+.+|. .+ ...+
T Consensus 106 -------------------------~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g---~~~~ 156 (307)
T COG3386 106 -------------------------DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG---GVVR 156 (307)
T ss_pred -------------------------CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CC---CEEE
Confidence 0001122334455566655444332 133444443 22 2223
Q ss_pred EEeccccccceEEEEEcCCCCEEEEEeCC-CeEEEEeCCC--Cce-----eeeeeccCCCEEEEEEcCCCCcEEEEEeCC
Q psy307 548 TFEGHMVAGYACSLDFSPDMSYLISGDAD-GKCYIWDWKT--TKL-----FKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619 (1019)
Q Consensus 548 ~l~gh~~~~~V~~v~fspdg~~Lasgs~D-G~I~IWDl~t--~~~-----l~~l~~h~~~V~sl~~sp~~~~~l~s~s~D 619 (1019)
.+..+. ...+.++||||++.|+..... +.|+-|++.. +.. ...+..+.+..-.++...+| .+.+++.++
T Consensus 157 l~~~~~--~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~ 233 (307)
T COG3386 157 LLDDDL--TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG-NLWVAAVWG 233 (307)
T ss_pred eecCcE--EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC-CEEEecccC
Confidence 333433 346789999999888877664 7888887752 211 11122234445556666666 344355555
Q ss_pred C-cEEEEeccc
Q psy307 620 A-ATAKVQDAN 629 (1019)
Q Consensus 620 g-~I~iwwd~~ 629 (1019)
| .| ..++.+
T Consensus 234 g~~v-~~~~pd 243 (307)
T COG3386 234 GGRV-VRFNPD 243 (307)
T ss_pred CceE-EEECCC
Confidence 5 44 334444
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.41 Score=55.42 Aligned_cols=209 Identities=11% Similarity=0.083 Sum_probs=100.5
Q ss_pred EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEE--cc------ccccEeE
Q psy307 370 RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY--YG------HRQAVRD 441 (1019)
Q Consensus 370 ~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l--~~------H~~~V~s 441 (1019)
.+...+....++|++++.|.-| +++.|..+|.+.|.|+ .+...+..- .. ....|++
T Consensus 77 ~P~~l~~~~~g~vtal~~S~iG---------------Fvaigy~~G~l~viD~-RGPavI~~~~i~~~~~~~~~~~~vt~ 140 (395)
T PF08596_consen 77 LPLTLLDAKQGPVTALKNSDIG---------------FVAIGYESGSLVVIDL-RGPAVIYNENIRESFLSKSSSSYVTS 140 (395)
T ss_dssp EEEEEE---S-SEEEEEE-BTS---------------EEEEEETTSEEEEEET-TTTEEEEEEEGGG--T-SS----EEE
T ss_pred CchhheeccCCcEeEEecCCCc---------------EEEEEecCCcEEEEEC-CCCeEEeeccccccccccccccCeeE
Confidence 3444555668899999998777 8999999999999999 555544432 22 2346888
Q ss_pred EEEec-----CC---CEEEEEEcCCeEEEEECCC---CceEEEE-----ecCCceEEEE-EecCCCeeeeccCCCceeee
Q psy307 442 ICFNN-----TG---TNFISAGYDRYLKLWDTES---GECISRF-----TSRKVAYCVK-FHPDEDKQHLDIPVDMKYIA 504 (1019)
Q Consensus 442 l~fsp-----dg---~~l~S~s~Dg~I~lWDl~t---~~~i~~~-----~~~~~v~~v~-~~p~~~~~~~~~~~~~~~i~ 504 (1019)
+.|+- |+ -.+++|...|.+.+|.+-. +.....+ .....+..+. ++.+...... .
T Consensus 141 ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~---------A 211 (395)
T PF08596_consen 141 IEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESAL---------A 211 (395)
T ss_dssp EEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B----------
T ss_pred EEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCccc---------C
Confidence 88862 33 3488889999999997641 1111111 1112222221 1111110000 0
Q ss_pred CCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEE-----cCCCCEEEEEeCCCeE
Q psy307 505 DPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDF-----SPDMSYLISGDADGKC 579 (1019)
Q Consensus 505 ~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~f-----spdg~~Lasgs~DG~I 579 (1019)
.. ..+..+.-...-+.+++...+..|+++...+.... .+.+..+. ....+.+ ...+..|++-..+|.|
T Consensus 212 t~--~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~--~K~~~~~~---~~~~~~vv~~~~~~~~~~Lv~l~~~G~i 284 (395)
T PF08596_consen 212 TI--SAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGA--HKSFDDPF---LCSSASVVPTISRNGGYCLVCLFNNGSI 284 (395)
T ss_dssp BH--HHHHGGGGT----EEEEEE-SSEEEEE-TT---EE--EEE-SS-E---EEEEEEEEEEE-EEEEEEEEEEETTSEE
T ss_pred ch--hHhhccccCCCcCcEEEEEcccceEEEeCCCCccc--ceeecccc---ccceEEEEeecccCCceEEEEEECCCcE
Confidence 00 00000000001122444455889999988765322 22232211 1222333 2356678888999999
Q ss_pred EEEeCCCCceeeeeeccC----CCEEEEEEcCCCC
Q psy307 580 YIWDWKTTKLFKKWKAHD----GVCISTLWHPHEP 610 (1019)
Q Consensus 580 ~IWDl~t~~~l~~l~~h~----~~V~sl~~sp~~~ 610 (1019)
+++.+..-+.+..++.+. ..+....++++|.
T Consensus 285 ~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gd 319 (395)
T PF08596_consen 285 RIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGD 319 (395)
T ss_dssp EEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred EEEECCCchHhhcccCCCccccccccccEECCCCC
Confidence 999999988888776542 1233445566664
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=94.57 E-value=11 Score=43.07 Aligned_cols=215 Identities=13% Similarity=0.029 Sum_probs=101.3
Q ss_pred ecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcccc-ccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCC
Q psy307 400 WFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHR-QAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRK 478 (1019)
Q Consensus 400 ~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~-~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~ 478 (1019)
|.+++.++|+++..||.-.+|-+.-....+..+..+. .......++++++.++-......|+-.|+++.+....+..+.
T Consensus 43 ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~ 122 (386)
T PF14583_consen 43 FTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPD 122 (386)
T ss_dssp B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--T
T ss_pred cCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCc
Confidence 4444457888888888777776654555555555443 223356788998888777677899999999987655555443
Q ss_pred c-eEEEEEec--CCCeeee--------------------------------ccCCCceeeeCCCCCcccEEEEcCCCCEE
Q psy307 479 V-AYCVKFHP--DEDKQHL--------------------------------DIPVDMKYIADPTMHSMPAVTSSPNNKWL 523 (1019)
Q Consensus 479 ~-v~~v~~~p--~~~~~~~--------------------------------~~~~~~~~i~~~~~~~i~~v~~spdg~~L 523 (1019)
. .....|.. ++...+. ++..+...........+..+.++|....+
T Consensus 123 ~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~l 202 (386)
T PF14583_consen 123 DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTL 202 (386)
T ss_dssp TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEE
T ss_pred ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCE
Confidence 2 22344432 2222211 11111111111223345678888877666
Q ss_pred EEEecCC-----eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEE-----eCCCeEEEEeCCCCceeeee
Q psy307 524 ACQSMDN-----KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISG-----DADGKCYIWDWKTTKLFKKW 593 (1019)
Q Consensus 524 asgs~Dg-----~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasg-----s~DG~I~IWDl~t~~~l~~l 593 (1019)
++-|..| .-+||-++.... ..+.+..+.....+..=-|+|||..|.-- +.+..|.-+|+.+++.....
T Consensus 203 i~fCHEGpw~~Vd~RiW~i~~dg~--~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~ 280 (386)
T PF14583_consen 203 IMFCHEGPWDLVDQRIWTINTDGS--NVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM 280 (386)
T ss_dssp EEEEE-S-TTTSS-SEEEEETTS-----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred EEEeccCCcceeceEEEEEEcCCC--cceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence 6655444 235665542211 11222223322345556799999976542 23446778888888654332
Q ss_pred eccCCCEEEEEEcCCCCcEEEEEeCC
Q psy307 594 KAHDGVCISTLWHPHEPSKVVTAGWD 619 (1019)
Q Consensus 594 ~~h~~~V~sl~~sp~~~~~l~s~s~D 619 (1019)
.. ..+..+--++++ .+++-=|.|
T Consensus 281 ~~--p~~~H~~ss~Dg-~L~vGDG~d 303 (386)
T PF14583_consen 281 EM--PWCSHFMSSPDG-KLFVGDGGD 303 (386)
T ss_dssp EE---SEEEEEE-TTS-SEEEEEE--
T ss_pred eC--CceeeeEEcCCC-CEEEecCCC
Confidence 22 245566667777 455554444
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=94.45 E-value=9.3 Score=41.80 Aligned_cols=162 Identities=15% Similarity=0.161 Sum_probs=90.0
Q ss_pred CcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEE
Q psy307 405 AHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVK 484 (1019)
Q Consensus 405 ~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~ 484 (1019)
++.|+.|+.+| +.++++............. .|..+...++-+.+++-+ |+.+.++++..-..........
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~--~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~------ 76 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKLS--SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLA------ 76 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEeecc--eEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccc------
Confidence 36889998888 8999984333333333322 299999998888777665 5999999987654332111000
Q ss_pred EecCCCeeeeccCCCceeeeCCCCCcccEEE--EcCCCCEEEEEecCCeEEEEEccCcc-cc-cceeEEeccccccceEE
Q psy307 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVT--SSPNNKWLACQSMDNKILIFSALNRF-KL-NRKKTFEGHMVAGYACS 560 (1019)
Q Consensus 485 ~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~--~spdg~~Lasgs~Dg~I~iwd~~~~~-~~-~~~~~l~gh~~~~~V~~ 560 (1019)
.+... ...........+..++ -...+...++.....+|.+|...... .. ...+.+.- ...+.+
T Consensus 77 -~~~~~---------~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l---p~~~~~ 143 (275)
T PF00780_consen 77 -FPKSR---------SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL---PDPPSS 143 (275)
T ss_pred -ccccc---------cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc---CCCcEE
Confidence 00000 0000000111122222 12233344444456699998887531 11 22333333 256888
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeee
Q psy307 561 LDFSPDMSYLISGDADGKCYIWDWKTTKLFKK 592 (1019)
Q Consensus 561 v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~ 592 (1019)
++|. ++.++.|..++ ..+.|+.++.....
T Consensus 144 i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l 172 (275)
T PF00780_consen 144 IAFL--GNKICVGTSKG-FYLIDLNTGSPSEL 172 (275)
T ss_pred EEEe--CCEEEEEeCCc-eEEEecCCCCceEE
Confidence 9998 55677776654 78899987765443
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=94.40 E-value=5.5 Score=47.84 Aligned_cols=220 Identities=14% Similarity=0.126 Sum_probs=112.2
Q ss_pred cEEEEeeCCCeEEEEecCCCcEEEEEecccCccEe-EEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe
Q psy307 349 HLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVR-DICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR 427 (1019)
Q Consensus 349 ~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~-~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~ 427 (1019)
..++.++.++.|.-.|..+ ++.+..+........ +......+ +.. .++..++.++.+|.|..+|.. +++
T Consensus 62 g~vy~~~~~g~l~AlD~~t-G~~~W~~~~~~~~~~~~~~~~~~g------~~~--~~~~~V~v~~~~g~v~AlD~~-TG~ 131 (488)
T cd00216 62 GDMYFTTSHSALFALDAAT-GKVLWRYDPKLPADRGCCDVVNRG------VAY--WDPRKVFFGTFDGRLVALDAE-TGK 131 (488)
T ss_pred CEEEEeCCCCcEEEEECCC-ChhhceeCCCCCccccccccccCC------cEE--ccCCeEEEecCCCeEEEEECC-CCC
Confidence 3566777789998888844 444444332211000 00000000 000 011578888899999999984 445
Q ss_pred EEEEEccccc-----cE-eEEEEecCCCEEEEEE---------cCCeEEEEECCCCceEEEEecCCc-eEEEE-EecCCC
Q psy307 428 CVRTYYGHRQ-----AV-RDICFNNTGTNFISAG---------YDRYLKLWDTESGECISRFTSRKV-AYCVK-FHPDED 490 (1019)
Q Consensus 428 ~~~~l~~H~~-----~V-~sl~fspdg~~l~S~s---------~Dg~I~lWDl~t~~~i~~~~~~~~-v~~v~-~~p~~~ 490 (1019)
.+..+..... .+ .+..+. + ..++.++ .++.|.-.|..+|+.+..+..... ..... +.+
T Consensus 132 ~~W~~~~~~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~--- 206 (488)
T cd00216 132 QVWKFGNNDQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGP--- 206 (488)
T ss_pred EeeeecCCCCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCC---
Confidence 4444432221 01 111222 2 3444443 468899999999998887765311 10000 000
Q ss_pred eeeeccCCCceeeeCCCCCcc-cEEEEcCCCCEEEEEecCC------------------eEEEEEccCcccccceeEEec
Q psy307 491 KQHLDIPVDMKYIADPTMHSM-PAVTSSPNNKWLACQSMDN------------------KILIFSALNRFKLNRKKTFEG 551 (1019)
Q Consensus 491 ~~~~~~~~~~~~i~~~~~~~i-~~v~~spdg~~Lasgs~Dg------------------~I~iwd~~~~~~~~~~~~l~g 551 (1019)
...........+ ...++.+.+..+++++.++ .|.-+|..++........ ..
T Consensus 207 ---------~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~-~~ 276 (488)
T cd00216 207 ---------DRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQT-TP 276 (488)
T ss_pred ---------CcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeC-CC
Confidence 000000000111 2345555666777776554 688888888754432221 11
Q ss_pred cc-----c-ccce-EEEEEcCCCC---EEEEEeCCCeEEEEeCCCCceeeeee
Q psy307 552 HM-----V-AGYA-CSLDFSPDMS---YLISGDADGKCYIWDWKTTKLFKKWK 594 (1019)
Q Consensus 552 h~-----~-~~~V-~~v~fspdg~---~Lasgs~DG~I~IWDl~t~~~l~~l~ 594 (1019)
+. . ..++ ..+. .-+|. .++.++.+|.+...|..+|+.+-...
T Consensus 277 ~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 277 HDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred CCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 11 0 0011 1111 12343 68888899999999999999887654
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=94.39 E-value=1.1 Score=41.61 Aligned_cols=90 Identities=13% Similarity=0.054 Sum_probs=57.6
Q ss_pred CEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCE
Q psy307 521 KWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVC 600 (1019)
Q Consensus 521 ~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V 600 (1019)
+.|++||.|..|++|+-.. .+..+... ..|++++-... ..++.+..+|+|-+|+-. ..+..++.- ..+
T Consensus 16 ~eLlvGs~D~~IRvf~~~e-----~~~Ei~e~---~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRiKSK-~~~ 83 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDE-----IVAEITET---DKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRIKSK-NQV 83 (111)
T ss_pred ceEEEecCCcEEEEEeCCc-----EEEEEecc---cceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeeeccC-CCe
Confidence 6899999999999998543 22333332 45777776666 558888899999999742 223333322 235
Q ss_pred EEEEEcC---CCCcEEEEEeCCCcE
Q psy307 601 ISTLWHP---HEPSKVVTAGWDAAT 622 (1019)
Q Consensus 601 ~sl~~sp---~~~~~l~s~s~Dg~I 622 (1019)
+++++.. +|..-|++|=.+|.|
T Consensus 84 ~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 84 TSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred EEEEEEcCCCCCceEEEEEecCCeE
Confidence 5665443 343467777777766
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.32 E-value=15 Score=43.63 Aligned_cols=121 Identities=18% Similarity=0.313 Sum_probs=69.6
Q ss_pred CCeEEEEEcCCC---CcEEEEeeCCCeEEEEecCCCc----EEEEEe-cccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 336 KGISAIRWFPKS---AHLLLSCSMDCRVKLWEVYKER----RCVRTY-YGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 336 ~~V~~i~fspd~---g~lLaSgs~Dg~I~IWdl~~~~----~~~~~~-~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
..|..+.|.|.+ ..-|+.......|.||.+-... +.+..- ..... .+-..|.| |.|+|...-+
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e---~~pvLpQG------CVWHPk~~iL 127 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIRE---PFPVLPQG------CVWHPKKAIL 127 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccC---CcccCCCc------ccccCCCceE
Confidence 469999999852 2234455667899999884211 111110 00000 11123333 6788877544
Q ss_pred EEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc-CCeEEEEECC
Q psy307 408 LLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY-DRYLKLWDTE 466 (1019)
Q Consensus 408 L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~-Dg~I~lWDl~ 466 (1019)
.+-...| .-.++++......+..--...+-|.|.+|.+||++|+.+-. .=.-.+||-.
T Consensus 128 ~VLT~~d-vSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 128 TVLTARD-VSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEecCc-eeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 3333333 33456665555555444466788999999999999776543 3346788853
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=93.92 E-value=16 Score=42.67 Aligned_cols=29 Identities=17% Similarity=0.461 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVY 366 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~ 366 (1019)
+.|.++.|+.+ ..|+.-..||.++++|+.
T Consensus 81 ~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 81 GRIVGMGWTDD--EELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CCEEEEEECCC--CeEEEEEcCCEEEEEeCC
Confidence 78999999873 456667799999999984
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=93.38 E-value=3.1 Score=50.84 Aligned_cols=96 Identities=9% Similarity=0.030 Sum_probs=52.7
Q ss_pred CCCEEEEEecCC------eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCC
Q psy307 519 NNKWLACQSMDN------KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG-----KCYIWDWKTT 587 (1019)
Q Consensus 519 dg~~Lasgs~Dg------~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG-----~I~IWDl~t~ 587 (1019)
+|...++|+.++ ++..||..+.. ...+..+.... ....... -++.+.+.|+.|| +|..||..+.
T Consensus 427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~-W~~~~~M~~~R--~~~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSNCLNSVECYDPETNT-WTLIAPMNTRR--SGFGVAV--LNGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred CCEEEEEcCcCCCccccceEEEEcCCCCc-eeecCCccccc--ccceEEE--ECCEEEEECCccCCCccceEEEEcCCCC
Confidence 677778887554 56778876541 11122221111 1111122 2677888888776 3777888765
Q ss_pred ce--eeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcE
Q psy307 588 KL--FKKWKAHDGVCISTLWHPHEPSKVVTAGWDAAT 622 (1019)
Q Consensus 588 ~~--l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I 622 (1019)
+- +..+......+-.+.+ ++...+.||.||.-
T Consensus 502 ~W~~v~~m~~~rs~~g~~~~---~~~ly~vGG~~~~~ 535 (571)
T KOG4441|consen 502 QWTMVAPMTSPRSAVGVVVL---GGKLYAVGGFDGNN 535 (571)
T ss_pred ceeEcccCccccccccEEEE---CCEEEEEecccCcc
Confidence 43 3333333333333333 44788899988764
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.26 E-value=15 Score=40.08 Aligned_cols=216 Identities=14% Similarity=0.111 Sum_probs=114.4
Q ss_pred cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccc-cccEeEEEEecCCCEEEEE
Q psy307 376 YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGH-RQAVRDICFNNTGTNFISA 454 (1019)
Q Consensus 376 ~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H-~~~V~sl~fspdg~~l~S~ 454 (1019)
.|-...|.++.|+|+. +.|++......-.||=- ..+..+.+..-. -+..-.|.+..+|++.++-
T Consensus 82 ~g~~~nvS~LTynp~~--------------rtLFav~n~p~~iVElt-~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~d 146 (316)
T COG3204 82 LGETANVSSLTYNPDT--------------RTLFAVTNKPAAIVELT-KEGDLIRTIPLTGFSDPETIEYIGGNQFVIVD 146 (316)
T ss_pred ccccccccceeeCCCc--------------ceEEEecCCCceEEEEe-cCCceEEEecccccCChhHeEEecCCEEEEEe
Confidence 3444557777777766 45555555554444433 566776665321 2334456777777777777
Q ss_pred EcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEE
Q psy307 455 GYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILI 534 (1019)
Q Consensus 455 s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~i 534 (1019)
-.++.+.+..+.....+..+... .+.... ..........++|+|..+.|...-.-+=+.|
T Consensus 147 ER~~~l~~~~vd~~t~~~~~~~~----~i~L~~----------------~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I 206 (316)
T COG3204 147 ERDRALYLFTVDADTTVISAKVQ----KIPLGT----------------TNKKNKGFEGLAWDPVDHRLFVAKERNPIGI 206 (316)
T ss_pred hhcceEEEEEEcCCccEEeccce----EEeccc----------------cCCCCcCceeeecCCCCceEEEEEccCCcEE
Confidence 77888888877655333222211 000000 0001234567899999888888888887777
Q ss_pred EEccCcccccceeEEecccc-----ccceEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEE-cC
Q psy307 535 FSALNRFKLNRKKTFEGHMV-----AGYACSLDFSP-DMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLW-HP 607 (1019)
Q Consensus 535 wd~~~~~~~~~~~~l~gh~~-----~~~V~~v~fsp-dg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~-sp 607 (1019)
|.+......-.......+.. -.-+.++.|.+ .+.+|+.+..++.+.-.|. +|..+..+.-+.+. .++.- -|
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~lsL~~g~-~gL~~dip 284 (316)
T COG3204 207 FEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL-SGEVIELLSLTKGN-HGLSSDIP 284 (316)
T ss_pred EEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEec-CCCeeeeEEeccCC-CCCcccCC
Confidence 76653321111111111110 02356677876 4567777777887777775 34444444332221 11110 11
Q ss_pred CCCcEEEEEeCCCcEEEEeccce
Q psy307 608 HEPSKVVTAGWDAATAKVQDANI 630 (1019)
Q Consensus 608 ~~~~~l~s~s~Dg~I~iwwd~~i 630 (1019)
+- -=++-..+|+|+++...+.
T Consensus 285 qa--EGiamDd~g~lYIvSEPnl 305 (316)
T COG3204 285 QA--EGIAMDDDGNLYIVSEPNL 305 (316)
T ss_pred Cc--ceeEECCCCCEEEEecCCc
Confidence 11 1245556666766655544
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.28 Score=38.09 Aligned_cols=33 Identities=15% Similarity=0.403 Sum_probs=29.3
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q psy307 556 GYACSLDFSPDMSYLISGDADGKCYIWDWKTTKL 589 (1019)
Q Consensus 556 ~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~ 589 (1019)
..|.+++|+|...+||.|+.+|.|.++.+ +++.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 56889999999999999999999999998 5543
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=93.16 E-value=16 Score=40.13 Aligned_cols=248 Identities=10% Similarity=0.091 Sum_probs=130.0
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCC------CcEEEEEecc-----cCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYK------ERRCVRTYYG-----HRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~------~~~~~~~~~g-----h~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
.-+.|+++|. +.+-++....+...+||... ...++-++.. .....+.+.|+......++.- .-...
T Consensus 24 N~WGia~~p~-~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~--g~~~~ 100 (336)
T TIGR03118 24 NAWGLSYRPG-GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGE--GITGP 100 (336)
T ss_pred ccceeEecCC-CCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCC--Ccccc
Confidence 3467999994 78888888889999999851 2233344442 224567777776543222110 00123
Q ss_pred cEEEEEeCCCcEEEEEccCCCe----EEEEEc-cccccE-eEEEEecC--CCEEEEEE-cCCeEEEEECCCCceE--EEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHR----CVRTYY-GHRQAV-RDICFNNT--GTNFISAG-YDRYLKLWDTESGECI--SRF 474 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~----~~~~l~-~H~~~V-~sl~fspd--g~~l~S~s-~Dg~I~lWDl~t~~~i--~~~ 474 (1019)
..++.++.||+|.-|...-... ....+. +..+.| ..+++... +.+|..+. ..++|.|+|-.-.+.. ..|
T Consensus 101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence 4578899999999998632222 122222 112333 33444432 44444443 4577888774322211 001
Q ss_pred ecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEe--cc
Q psy307 475 TSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFE--GH 552 (1019)
Q Consensus 475 ~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~--gh 552 (1019)
.....+ ..|.|- .+..+ ...--|+...-.++++.=+.|..-|.|-+||+... .++.+. +.
T Consensus 181 ~DP~iP--agyAPF----------nIqni--g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~----l~~r~as~g~ 242 (336)
T TIGR03118 181 IDPALP--AGYAPF----------NVQNL--GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ----LLRRVASSGR 242 (336)
T ss_pred cCCCCC--CCCCCc----------ceEEE--CCeEEEEEEecCCcccccccCCCcceEEEEcCCCc----EEEEeccCCc
Confidence 100000 000000 00000 00001111122333333345555689999998764 223332 22
Q ss_pred ccccceEEEEEcC------CCCEEEEEeCCCeEEEEeCCCCceeeeeeccCC------CEEEEEEcC
Q psy307 553 MVAGYACSLDFSP------DMSYLISGDADGKCYIWDWKTTKLFKKWKAHDG------VCISTLWHP 607 (1019)
Q Consensus 553 ~~~~~V~~v~fsp------dg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~------~V~sl~~sp 607 (1019)
. .....|+..| .|.+|+---.||+|..+|..+++.+..+....+ .++.+.|..
T Consensus 243 L--NaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 243 L--NAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred c--cCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 2 2244566654 567777777899999999999998888876543 356777765
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.09 E-value=15 Score=39.70 Aligned_cols=208 Identities=14% Similarity=0.169 Sum_probs=105.5
Q ss_pred cEEEEEeCCCc-EEEEEccCCCeEE-------EEEccccccEeEEEEecCCCEEEEEEcC-----CeEEEEECCCC-ceE
Q psy307 406 HLLLSCSMDCR-VKLWEVYKEHRCV-------RTYYGHRQAVRDICFNNTGTNFISAGYD-----RYLKLWDTESG-ECI 471 (1019)
Q Consensus 406 ~~L~sgs~Dg~-I~IWDl~~~~~~~-------~~l~~H~~~V~sl~fspdg~~l~S~s~D-----g~I~lWDl~t~-~~i 471 (1019)
.-++.+-.-|+ ..++|......++ +.+.+|. +|||||.+|...-.| |.|-|||.+.+ +.+
T Consensus 81 ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrv 154 (366)
T COG3490 81 RAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRV 154 (366)
T ss_pred ceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEeccccccee
Confidence 44444444444 3466663333222 2244565 899999998876554 67999998744 233
Q ss_pred EEEecC-CceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC--CEEEEEecCCeEEEEEccCcccccceeE
Q psy307 472 SRFTSR-KVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN--KWLACQSMDNKILIFSALNRFKLNRKKT 548 (1019)
Q Consensus 472 ~~~~~~-~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg--~~Lasgs~Dg~I~iwd~~~~~~~~~~~~ 548 (1019)
..+..+ -.+..+.+.+|+...++... .+..+|+- .-|=.-++.-.+.+.|..++..+ .+.+
T Consensus 155 gE~~t~GiGpHev~lm~DGrtlvvanG---------------GIethpdfgR~~lNldsMePSlvlld~atG~li-ekh~ 218 (366)
T COG3490 155 GEFSTHGIGPHEVTLMADGRTLVVANG---------------GIETHPDFGRTELNLDSMEPSLVLLDAATGNLI-EKHT 218 (366)
T ss_pred cccccCCcCcceeEEecCCcEEEEeCC---------------ceecccccCccccchhhcCccEEEEeccccchh-hhcc
Confidence 444332 34455556555554333110 00011110 00111122334445554444222 1222
Q ss_pred EeccccccceEEEEEcCCCCEEEEEeCCCe-----EEEEeCCCCceeeeeec-------cCCCEEEEEEcCCCCcEEEEE
Q psy307 549 FEGHMVAGYACSLDFSPDMSYLISGDADGK-----CYIWDWKTTKLFKKWKA-------HDGVCISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 549 l~gh~~~~~V~~v~fspdg~~Lasgs~DG~-----I~IWDl~t~~~l~~l~~-------h~~~V~sl~~sp~~~~~l~s~ 616 (1019)
+......-.+..++..+||..++.+-..|- -.+=-...++.+.-+.. -..-|-+++.+.+. .+++..
T Consensus 219 Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~-glV~lT 297 (366)
T COG3490 219 LPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRD-GLVALT 297 (366)
T ss_pred CchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccC-CeEEEe
Confidence 321111144777888888876665433331 11111223444443322 12346678888766 478888
Q ss_pred eCCCcEEEEeccceeeeeee
Q psy307 617 GWDAATAKVQDANIVKIAVE 636 (1019)
Q Consensus 617 s~Dg~I~iwwd~~i~ki~~e 636 (1019)
+-.|.....||...+.+..+
T Consensus 298 SP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 298 SPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred cCCCCeEEEEEcCCCcEEec
Confidence 88888889999988766533
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=93.00 E-value=14 Score=38.91 Aligned_cols=95 Identities=13% Similarity=0.043 Sum_probs=59.7
Q ss_pred EEEEcCCCCEE-EEEecCCeEEEEE--ccCcccccceeEEeccc----cccceEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy307 513 AVTSSPNNKWL-ACQSMDNKILIFS--ALNRFKLNRKKTFEGHM----VAGYACSLDFSPDMSYLISGDADGKCYIWDWK 585 (1019)
Q Consensus 513 ~v~~spdg~~L-asgs~Dg~I~iwd--~~~~~~~~~~~~l~gh~----~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~ 585 (1019)
.++|+.+.+.+ ++-+.+-+|.-|| ..++...++...+.-.. ..-..-.+++..+|.+.+++-..|+|.-.|..
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~ 241 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPT 241 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCC
Confidence 45555555444 3445555666666 33433222222221111 00112235566788888888888999999999
Q ss_pred CCceeeeeeccCCCEEEEEEcC
Q psy307 586 TTKLFKKWKAHDGVCISTLWHP 607 (1019)
Q Consensus 586 t~~~l~~l~~h~~~V~sl~~sp 607 (1019)
+|+.+..++-....|++++|--
T Consensus 242 tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 242 TGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCcEEEEEEcCCCceEEEEecC
Confidence 9999999998888999999963
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=92.48 E-value=21 Score=39.79 Aligned_cols=158 Identities=11% Similarity=0.093 Sum_probs=76.6
Q ss_pred EccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcc
Q psy307 432 YYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSM 511 (1019)
Q Consensus 432 l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i 511 (1019)
...-.+.+..+.-+++|+++++++.-....-||--...-.. ........+
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~------------------------------~~r~~~~ri 189 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQP------------------------------HNRNSSRRI 189 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EE------------------------------EE--SSS-E
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceE------------------------------EccCcccee
Confidence 44556778888999999988777655555677643211100 011122445
Q ss_pred cEEEEcCCCCEEEEEecCCeEEEEEc-cCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q psy307 512 PAVTSSPNNKWLACQSMDNKILIFSA-LNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLF 590 (1019)
Q Consensus 512 ~~v~~spdg~~Lasgs~Dg~I~iwd~-~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l 590 (1019)
..+.|.|++...+++ ..|.|+.=+. ........ .........-.+..++|.+++...++|+. |.+ +.....|+.-
T Consensus 190 q~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~-~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW 265 (302)
T PF14870_consen 190 QSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSE-PIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTW 265 (302)
T ss_dssp EEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE----B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-
T ss_pred hhceecCCCCEEEEe-CCcEEEEccCCCCcccccc-ccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccc
Confidence 566677776655544 7788877762 22111110 00111111123789999999888877655 433 3455666665
Q ss_pred eeeec---cCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 591 KKWKA---HDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 591 ~~l~~---h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
...+. -.+.+..+.|.+.. .-...|.+|.+.+|
T Consensus 266 ~~~~~~~~~~~n~~~i~f~~~~--~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 266 QKDRVGENVPSNLYRIVFVNPD--KGFVLGQDGVLLRY 301 (302)
T ss_dssp EE-GGGTTSSS---EEEEEETT--EEEEE-STTEEEEE
T ss_pred eECccccCCCCceEEEEEcCCC--ceEEECCCcEEEEe
Confidence 55432 23467888887653 56677789988765
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.37 E-value=6 Score=40.74 Aligned_cols=176 Identities=13% Similarity=0.100 Sum_probs=91.7
Q ss_pred cEEEEEeCC--CcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE-EEcCCeEEEEECCCCceEEEEecCCceEE
Q psy307 406 HLLLSCSMD--CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS-AGYDRYLKLWDTESGECISRFTSRKVAYC 482 (1019)
Q Consensus 406 ~~L~sgs~D--g~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S-~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~ 482 (1019)
+++.+.+.- ..|++||+. +++.+....-....+..=-...-|.++.. .-.||.-..+|.++-+++..+.-...-..
T Consensus 57 ~i~esTG~yg~S~ir~~~L~-~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWg 135 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLT-TGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGWG 135 (262)
T ss_pred EEEEeccccccceeEEEecc-CceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCccee
Confidence 566665543 569999994 33333322111111111111112333332 23467778888888777776654433222
Q ss_pred EEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccce-eEEeccccccceEEE
Q psy307 483 VKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRK-KTFEGHMVAGYACSL 561 (1019)
Q Consensus 483 v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~-~~l~gh~~~~~V~~v 561 (1019)
+ ..+++.|+.+....+++.-|..+-.....+ .++.|... ..++.+
T Consensus 136 L---------------------------------t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv-~~LNEL 181 (262)
T COG3823 136 L---------------------------------TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPV-SKLNEL 181 (262)
T ss_pred e---------------------------------ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeec-ccccce
Confidence 2 225555666655566666665543222111 12222110 112233
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee------------ccCCCEEEEEEcCCCCcEEEEEe
Q psy307 562 DFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK------------AHDGVCISTLWHPHEPSKVVTAG 617 (1019)
Q Consensus 562 ~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~------------~h~~~V~sl~~sp~~~~~l~s~s 617 (1019)
.|- ||...|-.-.+..|...|..+|+.+..+. .|....+.+++.|+++++++||-
T Consensus 182 E~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 182 EWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred eee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 332 56555555555566666777777655442 24557889999999877777764
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=92.31 E-value=4 Score=49.65 Aligned_cols=112 Identities=13% Similarity=0.280 Sum_probs=70.0
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEe--cCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN--NTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCV 483 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fs--pdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v 483 (1019)
+..++.+....+.|||.....-.........+.|.++.|. |+|+.+++.|....|.++.-..... ....+
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy----~~~~p---- 113 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY----TNKGP---- 113 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh----hcCCc----
Confidence 3444455556899999955443333333567889999986 6889999999999999996321110 00000
Q ss_pred EEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEc
Q psy307 484 KFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSA 537 (1019)
Q Consensus 484 ~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~ 537 (1019)
+|. +.....+.....++|...+|.++|..++.. ++++.|+|-
T Consensus 114 ~w~----------~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 114 SWA----------PIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred ccc----------eeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 010 011122334455788999999999766544 578888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=91.98 E-value=36 Score=41.33 Aligned_cols=115 Identities=13% Similarity=0.136 Sum_probs=60.4
Q ss_pred cEEEEeeCCCeEEEEecCCCcEEEEEecccC-ccEe---EEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccC
Q psy307 349 HLLLSCSMDCRVKLWEVYKERRCVRTYYGHR-QAVR---DICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYK 424 (1019)
Q Consensus 349 ~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~-~~V~---~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~ 424 (1019)
..|+.++.++.|.-.|.. +++.+..+.... ..+. ++.+...+ +.. ....++.++.|+.+.-.|..+
T Consensus 70 g~vyv~s~~g~v~AlDa~-TGk~lW~~~~~~~~~~~~~~~~~~~~rg------~av---~~~~v~v~t~dg~l~ALDa~T 139 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAK-TGKELWKYDPKLPDDVIPVMCCDVVNRG------VAL---YDGKVFFGTLDARLVALDAKT 139 (527)
T ss_pred CEEEEECCCCcEEEEECC-CCceeeEecCCCCccccccccccccccc------ceE---ECCEEEEEcCCCEEEEEECCC
Confidence 356667778888888874 445454433211 1111 11011111 000 124677888899999999844
Q ss_pred CCeEEEEEcc--cc--ccEeE-EEEecCCCEEEEEE------cCCeEEEEECCCCceEEEEec
Q psy307 425 EHRCVRTYYG--HR--QAVRD-ICFNNTGTNFISAG------YDRYLKLWDTESGECISRFTS 476 (1019)
Q Consensus 425 ~~~~~~~l~~--H~--~~V~s-l~fspdg~~l~S~s------~Dg~I~lWDl~t~~~i~~~~~ 476 (1019)
++.+..... +. ..+.+ -... ++ .++.++ .+|.|.-+|.++|+.+..+..
T Consensus 140 -Gk~~W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 140 -GKVVWSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred -CCEEeecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 444433321 11 11211 1111 34 444443 268999999999998877643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.55 Score=48.79 Aligned_cols=75 Identities=16% Similarity=0.128 Sum_probs=50.2
Q ss_pred CCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccC
Q psy307 520 NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHD 597 (1019)
Q Consensus 520 g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~ 597 (1019)
+.-+++|+.+|.|.+|.............. +.. ...+.|.-..++.+..+++.||.|+.|+++-.+.+.....|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-~~e--~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-GEE--SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhc-ccc--cceeccccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence 467899999999999987622111111111 111 123333344466789999999999999999888888777777
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=91.71 E-value=25 Score=44.04 Aligned_cols=93 Identities=17% Similarity=0.241 Sum_probs=57.9
Q ss_pred ccEeEEEEecCCCEEEEEEcCCeEEEEECCC-CceEEEEec-CCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEE
Q psy307 437 QAVRDICFNNTGTNFISAGYDRYLKLWDTES-GECISRFTS-RKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAV 514 (1019)
Q Consensus 437 ~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t-~~~i~~~~~-~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v 514 (1019)
-.|..|.++|+|+.++..|..| |.|-.+.. ...-..+.. ...+.|-.+. .+..+........|..+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~-----------v~~~~~~~~~~~~i~qv 152 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVP-----------VDERFFTSNSSLEIKQV 152 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEE-----------echhhccCCCCceEEEE
Confidence 4688899999999998888755 44444421 111122222 1223333222 12223333445667789
Q ss_pred EEcCC---CCEEEEEecCCeEEEEEccCcc
Q psy307 515 TSSPN---NKWLACQSMDNKILIFSALNRF 541 (1019)
Q Consensus 515 ~~spd---g~~Lasgs~Dg~I~iwd~~~~~ 541 (1019)
.|+|. +..|++-+.|+++++||+....
T Consensus 153 ~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 153 RWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 99986 5889999999999999997544
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.044 Score=65.97 Aligned_cols=64 Identities=13% Similarity=0.112 Sum_probs=34.3
Q ss_pred EEEEEeC-CCeEEEEeCCCCcee--------eeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceee
Q psy307 569 YLISGDA-DGKCYIWDWKTTKLF--------KKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVK 632 (1019)
Q Consensus 569 ~Lasgs~-DG~I~IWDl~t~~~l--------~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~k 632 (1019)
++++++. +..+++|.....+++ .....|++.|..+..+.--...+++-+-|++|.+|.+.....
T Consensus 306 ~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~a~~ 378 (1283)
T KOG1916|consen 306 LRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRKAQP 378 (1283)
T ss_pred EEEecccCCcceeEeeccchhhhhhhcccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcchhhh
Confidence 3455443 446899987766655 111234444333221110112356677899999998876443
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.97 E-value=7.2 Score=47.64 Aligned_cols=67 Identities=7% Similarity=-0.002 Sum_probs=38.7
Q ss_pred CCCEEEEEecC------CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCce
Q psy307 519 NNKWLACQSMD------NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG--KCYIWDWKTTKL 589 (1019)
Q Consensus 519 dg~~Lasgs~D------g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG--~I~IWDl~t~~~ 589 (1019)
+|+..++|+.+ ..+..||..+.........+.... .....+.+ +|++.++|+.+| .+..||..+.+=
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r--~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL--SALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc--ccceeEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence 56777777654 246788887511222233333222 11222233 788889999888 677788776653
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=90.68 E-value=39 Score=39.42 Aligned_cols=194 Identities=11% Similarity=0.120 Sum_probs=96.3
Q ss_pred EeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC----cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcC
Q psy307 382 VRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC----RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD 457 (1019)
Q Consensus 382 V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg----~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~D 457 (1019)
+....++|+|. .++++-+..| .|++.|+.++......+..... ..+.|.++++.|+....|
T Consensus 126 ~~~~~~Spdg~-------------~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~--~~~~W~~d~~~~~y~~~~ 190 (414)
T PF02897_consen 126 LGGFSVSPDGK-------------RLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF--SSVSWSDDGKGFFYTRFD 190 (414)
T ss_dssp EEEEEETTTSS-------------EEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES--EEEEECTTSSEEEEEECS
T ss_pred eeeeeECCCCC-------------EEEEEecCCCCceEEEEEEECCCCcCcCCccccccc--ceEEEeCCCCEEEEEEeC
Confidence 34567778775 3444444444 4999999555333333332221 238999999988777654
Q ss_pred C-----------eEEEEECCCCceE--EEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCc-ccEEEEcCCCCEE
Q psy307 458 R-----------YLKLWDTESGECI--SRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHS-MPAVTSSPNNKWL 523 (1019)
Q Consensus 458 g-----------~I~lWDl~t~~~i--~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~-i~~v~~spdg~~L 523 (1019)
. .|..|.+.+...- ..+.. ..... ...+..++++++|
T Consensus 191 ~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~-----------------------------~~~~~~~~~~~~s~d~~~l 241 (414)
T PF02897_consen 191 EDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE-----------------------------PDEPFWFVSVSRSKDGRYL 241 (414)
T ss_dssp TTTSS-CCGCCEEEEEEETTS-GGG-EEEEC------------------------------TTCTTSEEEEEE-TTSSEE
T ss_pred cccccccCCCCcEEEEEECCCChHhCeeEEee-----------------------------cCCCcEEEEEEecCcccEE
Confidence 4 2566666554311 11111 11111 3457778899998
Q ss_pred EEEecC----CeEEEEEccCcc-cccceeEEeccccccceEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCce---eee
Q psy307 524 ACQSMD----NKILIFSALNRF-KLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD---ADGKCYIWDWKTTKL---FKK 592 (1019)
Q Consensus 524 asgs~D----g~I~iwd~~~~~-~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs---~DG~I~IWDl~t~~~---l~~ 592 (1019)
+..+.. ..+.+.++.... .......+..... +....+... ++.+++... ..+.|.-.++.+... ...
T Consensus 242 ~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~-~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~ 319 (414)
T PF02897_consen 242 FISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED-GVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTV 319 (414)
T ss_dssp EEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS-S-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEE
T ss_pred EEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC-ceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeE
Confidence 865443 356777776530 0111222222221 222233333 444444443 245777778877653 224
Q ss_pred eeccCC--CEEEEEEcCCCCcEEEEEeCCCcEE
Q psy307 593 WKAHDG--VCISTLWHPHEPSKVVTAGWDAATA 623 (1019)
Q Consensus 593 l~~h~~--~V~sl~~sp~~~~~l~s~s~Dg~I~ 623 (1019)
+-.|.. .+..+.. .+..++++.-.++.-+
T Consensus 320 l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~ 350 (414)
T PF02897_consen 320 LIPEDEDVSLEDVSL--FKDYLVLSYRENGSSR 350 (414)
T ss_dssp EE--SSSEEEEEEEE--ETTEEEEEEEETTEEE
T ss_pred EcCCCCceeEEEEEE--ECCEEEEEEEECCccE
Confidence 445554 3444443 3445666666666443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=90.21 E-value=62 Score=40.98 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=24.8
Q ss_pred CCC---EEEEEeCCCeEEEEeCCCCceeeeee
Q psy307 566 DMS---YLISGDADGKCYIWDWKTTKLFKKWK 594 (1019)
Q Consensus 566 dg~---~Lasgs~DG~I~IWDl~t~~~l~~l~ 594 (1019)
+|+ .|+.++.+|.+++.|-++|+++...+
T Consensus 455 ~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 455 DGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 664 78999999999999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=90.06 E-value=20 Score=38.87 Aligned_cols=154 Identities=12% Similarity=0.118 Sum_probs=80.3
Q ss_pred cEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeE
Q psy307 381 AVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYL 460 (1019)
Q Consensus 381 ~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I 460 (1019)
.+.+.++++++.. +.+....++.-.+|-....+.....+.+ ..+..-.|++++...+....+...
T Consensus 25 ~~~s~AvS~dg~~-------------~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~ 89 (253)
T PF10647_consen 25 DVTSPAVSPDGSR-------------VAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGV 89 (253)
T ss_pred cccceEECCCCCe-------------EEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCce
Confidence 6788888988852 2222222333333333222222222222 256666899997766666656666
Q ss_pred EEEE-CCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCC-cccEEEEcCCCCEEEEEe---cCCeEEEE
Q psy307 461 KLWD-TESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMH-SMPAVTSSPNNKWLACQS---MDNKILIF 535 (1019)
Q Consensus 461 ~lWD-l~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~-~i~~v~~spdg~~Lasgs---~Dg~I~iw 535 (1019)
+++. ...+.... ..+.+ .... .|..+.+||||..++.-. .++.|.+-
T Consensus 90 ~~~~~~~~g~~~~--------~~v~~--------------------~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va 141 (253)
T PF10647_consen 90 RVVRDSASGTGEP--------VEVDW--------------------PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVA 141 (253)
T ss_pred EEEEecCCCccee--------EEecc--------------------cccCCceEEEEECCCCcEEEEEEecCCCCeEEEE
Confidence 6663 22222110 00111 0111 677888899998887765 34677766
Q ss_pred EccCcccc---cceeEE-eccccccceEEEEEcCCCCEEEEEeCCC
Q psy307 536 SALNRFKL---NRKKTF-EGHMVAGYACSLDFSPDMSYLISGDADG 577 (1019)
Q Consensus 536 d~~~~~~~---~~~~~l-~gh~~~~~V~~v~fspdg~~Lasgs~DG 577 (1019)
-+.....- ...... ........+..+.|.+++.+++.+...+
T Consensus 142 ~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 142 GVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred EEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 54321110 000000 1111125688999999999887776544
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=89.89 E-value=9.8 Score=45.06 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=43.7
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC-CeEEEEeCC
Q psy307 513 AVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD-GKCYIWDWK 585 (1019)
Q Consensus 513 ~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D-G~I~IWDl~ 585 (1019)
.+.|||....|++-.....-.+++++.... ..+..+++ .|.|.|.+|.+||+.|+.+-.. =.-+|||-.
T Consensus 117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi~~---~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 117 GCVWHPKKAILTVLTARDVSVLPSVHCDSS-RVKADIKT---SGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cccccCCCceEEEEecCceeEeeeeeeCCc-eEEEeccC---CceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 466788888887776666556666653321 11222333 3779999999999987765433 245788743
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=89.73 E-value=11 Score=39.27 Aligned_cols=166 Identities=11% Similarity=0.169 Sum_probs=89.2
Q ss_pred cEEEEEeCCCcEEEEEccC-CCeEEEEEccccccEeEEEEecCCCEEEEEEcCC------eEEEE-ECCCC----ceEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYK-EHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDR------YLKLW-DTESG----ECISR 473 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~-~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg------~I~lW-Dl~t~----~~i~~ 473 (1019)
+.|+.+...+.|.+|++.. .......+..- +.|..+.++..|++++|--.+. .+|+| |.+.. ..+..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 4555557778899999963 33445555444 8899999999999999875432 45554 22111 11111
Q ss_pred EecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCccc-cccee--EE-
Q psy307 474 FTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFK-LNRKK--TF- 549 (1019)
Q Consensus 474 ~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~-~~~~~--~l- 549 (1019)
.++-++-.....-........+.-|......+++..|-..-|+.|+ ++.+.+|.+..... ..... .|
T Consensus 108 --------RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe 178 (215)
T PF14761_consen 108 --------RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFE 178 (215)
T ss_pred --------EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEech
Confidence 0110111000000112234455556667788888888655566665 68899998764422 11111 11
Q ss_pred ---eccccccceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy307 550 ---EGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDW 584 (1019)
Q Consensus 550 ---~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl 584 (1019)
-.|.....+..+++ -+.|+|..+.. .+++..+
T Consensus 179 ~~l~~~~~~~~p~~v~i--c~~yiA~~s~~-ev~Vlkl 213 (215)
T PF14761_consen 179 RSLIDHIDNFKPTQVAI--CEGYIAVMSDL-EVLVLKL 213 (215)
T ss_pred hhhhheecCceEEEEEE--EeeEEEEecCC-EEEEEEE
Confidence 11222223445555 35677776544 4666544
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=89.32 E-value=16 Score=41.98 Aligned_cols=62 Identities=13% Similarity=-0.001 Sum_probs=36.4
Q ss_pred cceEEEEEcCCCCEEEEEeCC-------------------CeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEE
Q psy307 556 GYACSLDFSPDMSYLISGDAD-------------------GKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 556 ~~V~~v~fspdg~~Lasgs~D-------------------G~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~ 616 (1019)
.....++|.|||.+.++-+.. |.|.-+|..+++....-.++ .....++|+|+| .++++-
T Consensus 124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G-~l~~td 201 (367)
T TIGR02604 124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWG-DVFFCD 201 (367)
T ss_pred ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCC-CEEEEc
Confidence 346789999999866544421 44555665554432222233 345789999987 455554
Q ss_pred eCC
Q psy307 617 GWD 619 (1019)
Q Consensus 617 s~D 619 (1019)
..+
T Consensus 202 n~~ 204 (367)
T TIGR02604 202 NDD 204 (367)
T ss_pred cCC
Confidence 433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=89.30 E-value=1 Score=34.98 Aligned_cols=33 Identities=9% Similarity=-0.032 Sum_probs=29.1
Q ss_pred cccEeEEEEecCCCEEEEEEcCCeEEEEECCCCc
Q psy307 436 RQAVRDICFNNTGTNFISAGYDRYLKLWDTESGE 469 (1019)
Q Consensus 436 ~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~ 469 (1019)
...|.+++|+|....|+.++.||.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 456889999999999999999999999998 444
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=89.09 E-value=35 Score=37.01 Aligned_cols=120 Identities=19% Similarity=0.229 Sum_probs=73.6
Q ss_pred cEeEEEEecCCCEEEEEEcCC--eEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEE
Q psy307 438 AVRDICFNNTGTNFISAGYDR--YLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVT 515 (1019)
Q Consensus 438 ~V~sl~fspdg~~l~S~s~Dg--~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~ 515 (1019)
-...+.|..+|..+-|.+.-| .|+.+|+.+|+.......+..... ..++
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~Fg-----------------------------EGit 96 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFG-----------------------------EGIT 96 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--E-----------------------------EEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccc-----------------------------eeEE
Confidence 345677877888888888766 699999999998776654432211 1122
Q ss_pred EcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec
Q psy307 516 SSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA 595 (1019)
Q Consensus 516 ~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~ 595 (1019)
.. +++.....=.++...+||..+- ..+.++.-.. .++ .++ .||+.|+..+....|+++|..+.+..+++..
T Consensus 97 ~~-~d~l~qLTWk~~~~f~yd~~tl---~~~~~~~y~~-EGW--GLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 97 IL-GDKLYQLTWKEGTGFVYDPNTL---KKIGTFPYPG-EGW--GLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp EE-TTEEEEEESSSSEEEEEETTTT---EEEEEEE-SS-S----EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred EE-CCEEEEEEecCCeEEEEccccc---eEEEEEecCC-cce--EEE--cCCCEEEEECCccceEEECCcccceEEEEEE
Confidence 22 2233344446889999999765 3334443321 243 444 4777888887788999999998887776654
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=88.99 E-value=12 Score=45.56 Aligned_cols=115 Identities=12% Similarity=0.177 Sum_probs=67.6
Q ss_pred cEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEe--cCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEE
Q psy307 438 AVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFT--SRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVT 515 (1019)
Q Consensus 438 ~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~--~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~ 515 (1019)
...-+.-+.-++.-++-+....+.|||.+.+....... ....|..+.|..
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWts---------------------------- 82 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTS---------------------------- 82 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeee----------------------------
Confidence 33444444444444444445579999999887543332 345555555532
Q ss_pred EcCCCCEEEEEecCCeEEEEEcc-----C-cccccceeE--EeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy307 516 SSPNNKWLACQSMDNKILIFSAL-----N-RFKLNRKKT--FEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDW 584 (1019)
Q Consensus 516 ~spdg~~Lasgs~Dg~I~iwd~~-----~-~~~~~~~~~--l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl 584 (1019)
.|+|+.+++-+..+.|.+|.-. + ......++. +..++ ..+|.+..|.++|.+++.+ +..+.|+|-
T Consensus 83 -t~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T-~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 83 -TPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHT-PHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred -cCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCC-CCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 5678888888888888888542 1 111112222 22232 2457889999999766544 346888873
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=88.61 E-value=45 Score=37.17 Aligned_cols=113 Identities=15% Similarity=0.185 Sum_probs=59.9
Q ss_pred eeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEE
Q psy307 503 IADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIW 582 (1019)
Q Consensus 503 i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IW 582 (1019)
+.......+..+..+++|+++++++..+...-||--.. .. ..+. ......|..+.|+|++.+.+.+ ..|.|++=
T Consensus 139 ~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~-~w---~~~~-r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s 212 (302)
T PF14870_consen 139 VVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT-TW---QPHN-RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFS 212 (302)
T ss_dssp EE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S-S----EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEE
T ss_pred cccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc-cc---eEEc-cCccceehhceecCCCCEEEEe-CCcEEEEc
Confidence 34445567788888999999999887777777875432 01 1111 1123569999999998876655 78888887
Q ss_pred e-CCCCceeee----eeccCCCEEEEEEcCCCCcEEEEEeCCCcEE
Q psy307 583 D-WKTTKLFKK----WKAHDGVCISTLWHPHEPSKVVTAGWDAATA 623 (1019)
Q Consensus 583 D-l~t~~~l~~----l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~ 623 (1019)
+ ......... +..-.-.+.+++|.+++ .+.+++..|++.
T Consensus 213 ~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~--~~wa~gg~G~l~ 256 (302)
T PF14870_consen 213 DDPDDGETWSEPIIPIKTNGYGILDLAYRPPN--EIWAVGGSGTLL 256 (302)
T ss_dssp E-TTEEEEE---B-TTSS--S-EEEEEESSSS---EEEEESTT-EE
T ss_pred cCCCCccccccccCCcccCceeeEEEEecCCC--CEEEEeCCccEE
Confidence 7 222222111 22223358999999886 355555666653
|
|
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=88.31 E-value=16 Score=44.54 Aligned_cols=52 Identities=15% Similarity=0.326 Sum_probs=38.8
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee--ccCCCEEEEEEcCC
Q psy307 556 GYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK--AHDGVCISTLWHPH 608 (1019)
Q Consensus 556 ~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~--~h~~~V~sl~~sp~ 608 (1019)
+.+..+..||++++|+.-..+|.|.+-+....+.+..+. .|.- .-.++|+-+
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~-p~qm~Wcgn 270 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDP-PKQMAWCGN 270 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCc-hHhceeecC
Confidence 447789999999999999999999999988777776665 2332 235556543
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=88.05 E-value=52 Score=37.20 Aligned_cols=119 Identities=17% Similarity=0.205 Sum_probs=63.0
Q ss_pred cEeEEEEecCCCEEEEEEcC------CeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcc
Q psy307 438 AVRDICFNNTGTNFISAGYD------RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSM 511 (1019)
Q Consensus 438 ~V~sl~fspdg~~l~S~s~D------g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i 511 (1019)
..-+|++.++|..+++.-.+ ..|..++.. |+.+..+..+.. +.+... ...........
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~-----~~~~~~----------~~~~~~~N~G~ 149 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAA-----FLPDAN----------GTSGRRNNRGF 149 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccc-----cccccC----------ccccccCCCCe
Confidence 34477887778777776666 677777766 666555532211 000000 00112334567
Q ss_pred cEEEEcCCCCEEEEEec-----CC--e-------EEEE--EccCcccccceeEEeccc-----cccceEEEEEcCCCCEE
Q psy307 512 PAVTSSPNNKWLACQSM-----DN--K-------ILIF--SALNRFKLNRKKTFEGHM-----VAGYACSLDFSPDMSYL 570 (1019)
Q Consensus 512 ~~v~~spdg~~Lasgs~-----Dg--~-------I~iw--d~~~~~~~~~~~~l~gh~-----~~~~V~~v~fspdg~~L 570 (1019)
.+++++|+|+.|++... |+ . ++++ |..+.........+.-.. ....+..+.+-+++++|
T Consensus 150 E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lL 229 (326)
T PF13449_consen 150 EGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLL 229 (326)
T ss_pred EEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEE
Confidence 78999999996665532 22 1 4444 443311111111111111 23558889999999977
Q ss_pred EE
Q psy307 571 IS 572 (1019)
Q Consensus 571 as 572 (1019)
+.
T Consensus 230 vL 231 (326)
T PF13449_consen 230 VL 231 (326)
T ss_pred EE
Confidence 64
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=87.33 E-value=31 Score=37.43 Aligned_cols=155 Identities=8% Similarity=0.011 Sum_probs=81.9
Q ss_pred CeEEEEEcCCCCcEEEEee--CCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC
Q psy307 337 GISAIRWFPKSAHLLLSCS--MDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD 414 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs--~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D 414 (1019)
.+.+.++++++..+.+... ....+.++.. .......+.+ ..+....|++++ .+.+....+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g--~~l~~PS~d~~g--------------~~W~v~~~~ 86 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTG--GSLTRPSWDPDG--------------WVWTVDDGS 86 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccC--CccccccccCCC--------------CEEEEEcCC
Confidence 6888999998655555553 3344555543 3222222232 256667777776 455555556
Q ss_pred CcEEEEE-ccCCCeEEEEEcc--ccccEeEEEEecCCCEEEEEEc---CCeEEEEECCCCceEEEEecCCceEEEEEecC
Q psy307 415 CRVKLWE-VYKEHRCVRTYYG--HRQAVRDICFNNTGTNFISAGY---DRYLKLWDTESGECISRFTSRKVAYCVKFHPD 488 (1019)
Q Consensus 415 g~I~IWD-l~~~~~~~~~l~~--H~~~V~sl~fspdg~~l~S~s~---Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~ 488 (1019)
...+++. ............. -.+.|..+.+||||.+++.... ++.|.+=-+.... +
T Consensus 87 ~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~------------------~ 148 (253)
T PF10647_consen 87 GGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDG------------------D 148 (253)
T ss_pred CceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCC------------------C
Confidence 6666663 2122211222211 1228999999999999776652 4555554332110 0
Q ss_pred CCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC
Q psy307 489 EDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN 530 (1019)
Q Consensus 489 ~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg 530 (1019)
+....+ .....+.......+..+.|.+++.+++.+...+
T Consensus 149 g~~~~l---~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 149 GVPRRL---TGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred CCccee---ccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 000000 001112223345778899999998877766544
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=87.05 E-value=98 Score=39.27 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=66.6
Q ss_pred CCcccEEEEcCCC------CEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEE
Q psy307 508 MHSMPAVTSSPNN------KWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYI 581 (1019)
Q Consensus 508 ~~~i~~v~~spdg------~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~I 581 (1019)
...+.|+.++|-| ++++.|..+..+.+.-............+.+......|.-.++-.|+.+|.++..||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 4567888888742 3788998888766654433322222222333333344555667667889999999998754
Q ss_pred --EeCCCCceeeeeecc--CCCEEEEEEcCCCCcEEEEEeCCCcE
Q psy307 582 --WDWKTTKLFKKWKAH--DGVCISTLWHPHEPSKVVTAGWDAAT 622 (1019)
Q Consensus 582 --WDl~t~~~l~~l~~h--~~~V~sl~~sp~~~~~l~s~s~Dg~I 622 (1019)
.|..+|..-..-+.| ..++.--.|+..+...++++|.--.+
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~v 654 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTV 654 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEE
Confidence 455666543322222 23444445665555556665544444
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.92 E-value=16 Score=44.61 Aligned_cols=52 Identities=8% Similarity=0.119 Sum_probs=30.3
Q ss_pred CCCEEEEEeCCC------eEEEEeCCC-C--ceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCC
Q psy307 566 DMSYLISGDADG------KCYIWDWKT-T--KLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 566 dg~~Lasgs~DG------~I~IWDl~t-~--~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
+|++.+.|+.++ .+..||..+ . ..+..+.........+.. ++.+.++||.||
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~~iyv~Gg~~~ 523 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DNTIMMLHCYES 523 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE---CCEEEEEeeecc
Confidence 577667776542 467899876 3 334444433333233333 336888888887
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=86.47 E-value=13 Score=39.00 Aligned_cols=106 Identities=10% Similarity=0.119 Sum_probs=65.5
Q ss_pred eeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecC--C----CcEEEEEecccCccEeEEEEcCCCCceeEEEeecCC
Q psy307 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVY--K----ERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPK 403 (1019)
Q Consensus 330 ~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~--~----~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~ 403 (1019)
.+.+.-+--+.++|+.+...+-++-+.+-+|.-||.. + .++.+..+... .+ .=..-|||. ++ ..
T Consensus 152 ~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~-~~--~e~~~PDGm----~I---D~ 221 (310)
T KOG4499|consen 152 LIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKS-QP--FESLEPDGM----TI---DT 221 (310)
T ss_pred eeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccC-CC--cCCCCCCcc----eE---cc
Confidence 3333334456788988756666777888899889842 1 11222222211 00 001124441 11 12
Q ss_pred CCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec
Q psy307 404 SAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN 446 (1019)
Q Consensus 404 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp 446 (1019)
.+++.++.-..|+|...|. .+++.+..+.-....|+|+||--
T Consensus 222 eG~L~Va~~ng~~V~~~dp-~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 222 EGNLYVATFNGGTVQKVDP-TTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCcEEEEEecCcEEEEECC-CCCcEEEEEEcCCCceEEEEecC
Confidence 4467788888899999999 77777777777789999999963
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=85.93 E-value=77 Score=37.00 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=38.9
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCC
Q psy307 556 GYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGV 599 (1019)
Q Consensus 556 ~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~ 599 (1019)
..+.+++.+|++++.|+.+.=|+|.++|+.++..++.++|-...
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA 351 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA 351 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc
Confidence 34778999999999999988899999999999999999987653
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=85.71 E-value=6.9 Score=45.23 Aligned_cols=141 Identities=15% Similarity=0.194 Sum_probs=83.8
Q ss_pred CCCEEE-EEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEE
Q psy307 447 TGTNFI-SAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLAC 525 (1019)
Q Consensus 447 dg~~l~-S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Las 525 (1019)
+.+.|+ .|+.-..+.-.|++.|+.+..+..+..+ .+.|.|....... . +.+.| +
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qm----------------------t-~eqtl-v 532 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQM----------------------T-DEQTL-V 532 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhc----------------------C-ccceE-E
Confidence 444433 4555567888899999999998887766 6777776431110 1 11223 3
Q ss_pred EecCCeEEEEEccCcccccceeEEeccccccceEEEEEcC----CCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEE
Q psy307 526 QSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP----DMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCI 601 (1019)
Q Consensus 526 gs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp----dg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~ 601 (1019)
|-.+..|.-.|.+-.. +.+...... .+++.-.||. ...|+|.|+..|.|++||--.-+....+++-...|.
T Consensus 533 GlS~~svFrIDPR~~g--NKi~v~esK---dY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk 607 (776)
T COG5167 533 GLSDYSVFRIDPRARG--NKIKVVESK---DYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIK 607 (776)
T ss_pred eecccceEEecccccC--Cceeeeeeh---hccccccccccccccCceEEEecCCCceeeehhhcchhhhcCccccccee
Confidence 4445555555554321 112211111 2233333333 345899999999999999544344445667777899
Q ss_pred EEEEcCCCCcEEEEEe
Q psy307 602 STLWHPHEPSKVVTAG 617 (1019)
Q Consensus 602 sl~~sp~~~~~l~s~s 617 (1019)
.+..+.+|...|+||-
T Consensus 608 ~idvta~Gk~ilaTCk 623 (776)
T COG5167 608 HIDVTANGKHILATCK 623 (776)
T ss_pred eeEeecCCcEEEEeec
Confidence 9999999965555553
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=85.43 E-value=35 Score=39.81 Aligned_cols=168 Identities=10% Similarity=0.056 Sum_probs=88.4
Q ss_pred eeeccCCCCeEEEEEcCCCCcEEE-EeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 329 HTWEGHTKGISAIRWFPKSAHLLL-SCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 329 ~~l~gH~~~V~~i~fspd~g~lLa-Sgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
....|.+-.+..+-.+..+..+|+ .|+.-..+.--|+ .-++.+..+.-|... -+.|.|... |..-.+..
T Consensus 460 s~~~GKSidp~K~mlh~~dssli~~dg~~~~kLykmDI-ErGkvveeW~~~ddv--vVqy~p~~k-------f~qmt~eq 529 (776)
T COG5167 460 SDDGGKSIDPEKIMLHDNDSSLIYLDGGERDKLYKMDI-ERGKVVEEWDLKDDV--VVQYNPYFK-------FQQMTDEQ 529 (776)
T ss_pred cCCCCCcCChhhceeecCCcceEEecCCCcccceeeec-ccceeeeEeecCCcc--eeecCCchh-------HHhcCccc
Confidence 333343333444444443444444 4555556666666 445666676666554 456666542 11111223
Q ss_pred EEEEeCCCcEEEEEccCCCeEEEEEcc----ccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEE
Q psy307 408 LLSCSMDCRVKLWEVYKEHRCVRTYYG----HRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCV 483 (1019)
Q Consensus 408 L~sgs~Dg~I~IWDl~~~~~~~~~l~~----H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v 483 (1019)
-+.|-.+..|.-.|.+..+..+..... ......|..- ..+.+++.||..|-|++||--.-+.
T Consensus 530 tlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rA------------- 595 (776)
T COG5167 530 TLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRA------------- 595 (776)
T ss_pred eEEeecccceEEecccccCCceeeeeehhcccccccccccc-ccCceEEEecCCCceeeehhhcchh-------------
Confidence 345555666666666555432222211 1111222222 2345899999999999999422111
Q ss_pred EEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEcc
Q psy307 484 KFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSAL 538 (1019)
Q Consensus 484 ~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~ 538 (1019)
+.........|..+..+.+|+++++.| ...+.+-|+.
T Consensus 596 -----------------KtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 596 -----------------KTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred -----------------hhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 111112234566778888999888776 5677777765
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=84.95 E-value=3.4 Score=31.35 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCC--cEEEEeeCCCeEEEEecCC
Q psy307 336 KGISAIRWFPKSA--HLLLSCSMDCRVKLWEVYK 367 (1019)
Q Consensus 336 ~~V~~i~fspd~g--~lLaSgs~Dg~I~IWdl~~ 367 (1019)
++|.++.|+|..+ .+|+-+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4789999998766 7999999999999999953
|
It contains a characteristic DLL sequence motif. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=84.82 E-value=1.2e+02 Score=38.20 Aligned_cols=113 Identities=6% Similarity=0.002 Sum_probs=56.6
Q ss_pred CeEEEEEcCCCCcEEEEeeCC----CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe
Q psy307 337 GISAIRWFPKSAHLLLSCSMD----CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS 412 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~D----g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs 412 (1019)
.+..+.++|++..++++...+ ..|++-|+.++..+...+.+ .. ..++|++|+. .++++..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~~--~~~~w~~D~~-------------~~~y~~~ 191 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-VE--PSFVWANDSW-------------TFYYVRK 191 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-cc--eEEEEeeCCC-------------EEEEEEe
Confidence 467788999744444443333 35777787433211111211 11 3467777664 3444433
Q ss_pred C-----CCcEEEEEccCCC-eEEEEEccccccEe-EEEEecCCCEEEEEEc---CCeEEEEEC
Q psy307 413 M-----DCRVKLWEVYKEH-RCVRTYYGHRQAVR-DICFNNTGTNFISAGY---DRYLKLWDT 465 (1019)
Q Consensus 413 ~-----Dg~I~IWDl~~~~-~~~~~l~~H~~~V~-sl~fspdg~~l~S~s~---Dg~I~lWDl 465 (1019)
. ...|..+++.+.. .....+........ .+..+.++++++..+. ++.+.+++.
T Consensus 192 ~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 192 HPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred cCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 2 2467777875442 22233333222232 3333447777554443 346888884
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=84.22 E-value=86 Score=36.07 Aligned_cols=59 Identities=10% Similarity=0.110 Sum_probs=36.9
Q ss_pred cccEeEEEEecCCCEEEEEEcC-------------------CeEEEEECCCCceEEEEecCCceEEEEEecCCCeeee
Q psy307 436 RQAVRDICFNNTGTNFISAGYD-------------------RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL 494 (1019)
Q Consensus 436 ~~~V~sl~fspdg~~l~S~s~D-------------------g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~ 494 (1019)
......++|.|||...++.+.. |.|.-+|..+++....-.....+..++|+|++.....
T Consensus 123 ~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 123 HHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFC 200 (367)
T ss_pred cccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEE
Confidence 3557789999999876655521 4466666665554322233355678899888765443
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=83.99 E-value=65 Score=40.48 Aligned_cols=95 Identities=17% Similarity=0.226 Sum_probs=55.3
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEE-------EcCCCCceeEEEeecCCC--Cc
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDIC-------FNNTGTNFISAIRWFPKS--AH 406 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~-------fspdg~~~vs~i~~~p~~--~~ 406 (1019)
-.|..|.++|. |++|+..|..|.+.+ .+.........+.+-...|.|-. |..+....|..+.|+|.. +.
T Consensus 85 f~v~~i~~n~~-g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPT-GSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECCC-CCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 36888999995 777777777655444 33111000111222222222222 222333445567787774 57
Q ss_pred EEEEEeCCCcEEEEEccCCCeEEEEE
Q psy307 407 LLLSCSMDCRVKLWEVYKEHRCVRTY 432 (1019)
Q Consensus 407 ~L~sgs~Dg~I~IWDl~~~~~~~~~l 432 (1019)
.|+.-..|+++++||+.....+.+++
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred eEEEEecCCEEEEEecCCCCCCeEEE
Confidence 88899999999999997655555544
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=83.84 E-value=61 Score=39.86 Aligned_cols=119 Identities=12% Similarity=0.091 Sum_probs=62.7
Q ss_pred eeCCCCCcccEEEEcCCCCEEEEEecCC-----eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC
Q psy307 503 IADPTMHSMPAVTSSPNNKWLACQSMDN-----KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG 577 (1019)
Q Consensus 503 i~~~~~~~i~~v~~spdg~~Lasgs~Dg-----~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG 577 (1019)
...+..+.-..++|-|.|..+++-..|| .|..+..++-..-. ..+.- .....+..++|.-....++.+ ...
T Consensus 241 ~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGe--f~lr~-~~dEk~~~~~wn~~s~vlav~-~~n 316 (1243)
T COG5290 241 ASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGE--FDLRV-GCDEKAFLENWNLLSTVLAVA-EGN 316 (1243)
T ss_pred ccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCC--ccccC-CchhhhhhhhhhHHHHHHHHh-hcc
Confidence 3444445555689999999999877554 45555433211000 00000 011224456666555544443 445
Q ss_pred eEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 578 KCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 578 ~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.|.+|-.++-.-.-+..-.-..+.-+.|||.....+.-.+...-.+++
T Consensus 317 ~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~~V~ 364 (1243)
T COG5290 317 LLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFRDGERILRVF 364 (1243)
T ss_pred eEEEEEccceEEEEEEeecCCCcceeeeccccCcEEEEecCCeEEEEE
Confidence 799997655432222222223466789999876666555544333333
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=83.71 E-value=25 Score=39.84 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=22.4
Q ss_pred EeEEEEecCCCEEEEEEcCCeEEEEECCCCc
Q psy307 439 VRDICFNNTGTNFISAGYDRYLKLWDTESGE 469 (1019)
Q Consensus 439 V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~ 469 (1019)
.++|+|.|+|+.|+ +...|.|++++ ..+.
T Consensus 4 P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~ 32 (331)
T PF07995_consen 4 PRSMAFLPDGRLLV-AERSGRIWVVD-KDGS 32 (331)
T ss_dssp EEEEEEETTSCEEE-EETTTEEEEEE-TTTE
T ss_pred ceEEEEeCCCcEEE-EeCCceEEEEe-CCCc
Confidence 46789999987766 46699999999 4444
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=83.51 E-value=36 Score=42.16 Aligned_cols=118 Identities=14% Similarity=0.184 Sum_probs=73.7
Q ss_pred CCCcccEEEEc--CCCCEEEEEecCCeEEEEEccCcc---------------cccceeEEeccccccceEEEEEc--CCC
Q psy307 507 TMHSMPAVTSS--PNNKWLACQSMDNKILIFSALNRF---------------KLNRKKTFEGHMVAGYACSLDFS--PDM 567 (1019)
Q Consensus 507 ~~~~i~~v~~s--pdg~~Lasgs~Dg~I~iwd~~~~~---------------~~~~~~~l~gh~~~~~V~~v~fs--pdg 567 (1019)
..+.|+.+.+. -+...|+.+..||.|.+|.+..-. ......-+.- .....+.+++++ ...
T Consensus 99 ~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~ 177 (717)
T PF08728_consen 99 FPHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKS 177 (717)
T ss_pred CCceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcc
Confidence 45666665554 355788999999999999763210 0000001111 122457889998 788
Q ss_pred CEEEEEeCCCeEEEEeCCC--Cceee-eeeccCCCEEEEEEcCCC--Cc---EEEEEeCCCcEEEE
Q psy307 568 SYLISGDADGKCYIWDWKT--TKLFK-KWKAHDGVCISTLWHPHE--PS---KVVTAGWDAATAKV 625 (1019)
Q Consensus 568 ~~Lasgs~DG~I~IWDl~t--~~~l~-~l~~h~~~V~sl~~sp~~--~~---~l~s~s~Dg~I~iw 625 (1019)
++||+++....|.||-... .+... .-..|...|.+|+|.++. +. +|++++-.|.+.+|
T Consensus 178 rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~ 243 (717)
T PF08728_consen 178 RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTF 243 (717)
T ss_pred eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEE
Confidence 8899888888888876543 22111 111245568888888765 22 78889999988664
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=83.51 E-value=0.22 Score=56.71 Aligned_cols=143 Identities=13% Similarity=0.160 Sum_probs=95.8
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC
Q psy307 441 DICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN 520 (1019)
Q Consensus 441 sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg 520 (1019)
...|-+.+..++.++.+..+..||-. |+........ +....++|.-+|
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~t-------------------------------g~aldm~wDkeg 86 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNPT-------------------------------GKALDMAWDKEG 86 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhh-cceecccCCc-------------------------------hhHhhhhhcccc
Confidence 34677777778888888888888843 3322222211 112234444455
Q ss_pred CEE-EEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCC
Q psy307 521 KWL-ACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGV 599 (1019)
Q Consensus 521 ~~L-asgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~ 599 (1019)
..+ +.+-..+.+.+||+.+..... -.+.+.. .. .-+.|++.+..++.|...|.+.|++..+.+.+-....|...
T Consensus 87 dvlavlAek~~piylwd~n~eytqq--LE~gg~~-s~--sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RR 161 (615)
T KOG2247|consen 87 DVLAVLAEKTGPIYLWDVNSEYTQQ--LESGGTS-SK--SLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRR 161 (615)
T ss_pred chhhhhhhcCCCeeechhhhhhHHH--HhccCcc-hH--HHHhhccCCccccccccccceEEEeccchhhhhhhcccccc
Confidence 444 445567899999998653221 1111211 11 12689999999999999999999999888877766668889
Q ss_pred EEEEEEcCCCCcEEEEEeCCCcE
Q psy307 600 CISTLWHPHEPSKVVTAGWDAAT 622 (1019)
Q Consensus 600 V~sl~~sp~~~~~l~s~s~Dg~I 622 (1019)
+++++|.+.+ +++.++.|..+
T Consensus 162 gtq~av~lEd--~vil~dcd~~L 182 (615)
T KOG2247|consen 162 GTQIAVTLED--YVILCDCDNTL 182 (615)
T ss_pred eeEEEecccc--eeeecCcHHHH
Confidence 9999999976 68888887665
|
|
| >KOG4460|consensus | Back alignment and domain information |
|---|
Probab=83.34 E-value=26 Score=40.88 Aligned_cols=92 Identities=17% Similarity=0.201 Sum_probs=57.1
Q ss_pred cEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCC-ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEE
Q psy307 438 AVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRK-VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTS 516 (1019)
Q Consensus 438 ~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~-~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~ 516 (1019)
.|..+..++.|..++-+|.+|.+.++=.+....-..+..++ .+.|-.+.-+ .........-.+..++|
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~-----------~~~ftss~~ltl~Qa~W 173 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVA-----------ERFFTSSTSLTLKQAAW 173 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccc-----------ceeeccCCceeeeeccc
Confidence 46777889999999988889876655333222223344332 3344333222 12222223334567888
Q ss_pred cCCC---CEEEEEecCCeEEEEEccCc
Q psy307 517 SPNN---KWLACQSMDNKILIFSALNR 540 (1019)
Q Consensus 517 spdg---~~Lasgs~Dg~I~iwd~~~~ 540 (1019)
+|+. ..|..-+.|+.|++||+...
T Consensus 174 HP~S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 174 HPSSILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred cCCccCCceEEEEecCcEEEEEecCCc
Confidence 8875 67888888999999998754
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=83.10 E-value=20 Score=43.93 Aligned_cols=94 Identities=15% Similarity=0.141 Sum_probs=50.2
Q ss_pred CCCEEEEEecCC-----eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC------eEEEEeCCCC
Q psy307 519 NNKWLACQSMDN-----KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG------KCYIWDWKTT 587 (1019)
Q Consensus 519 dg~~Lasgs~Dg-----~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG------~I~IWDl~t~ 587 (1019)
+|...++|+.|| +|..||..+. .......+.... .....+. -+|.+.++|+.+| ++..||..+.
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~-~W~~va~m~~~r--~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTN-KWTPVAPMLTRR--SGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETN 454 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCC-cccccCCCCcce--eeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCC
Confidence 677888898886 5777887653 111111111111 1111122 2788888888664 4678887765
Q ss_pred c--eeeeeeccCCCEEEEEEcCCCCcEEEEEeCCC
Q psy307 588 K--LFKKWKAHDGVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 588 ~--~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
+ .+..+..-... .+++.. ++.+.+.||.||
T Consensus 455 ~W~~~~~M~~~R~~-~g~a~~--~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 455 TWTLIAPMNTRRSG-FGVAVL--NGKIYVVGGFDG 486 (571)
T ss_pred ceeecCCccccccc-ceEEEE--CCEEEEECCccC
Confidence 3 23333221111 123222 236888888887
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=82.75 E-value=53 Score=39.90 Aligned_cols=64 Identities=13% Similarity=0.112 Sum_probs=32.2
Q ss_pred CCCEEEEEecC--------CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC-----CeEEEEeCC
Q psy307 519 NNKWLACQSMD--------NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD-----GKCYIWDWK 585 (1019)
Q Consensus 519 dg~~Lasgs~D--------g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D-----G~I~IWDl~ 585 (1019)
++..++.|+.+ ..+.+||..+.. ......+.... .....+.+ ++++++.|+.+ +.+.+||..
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~r--~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 511 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNK-WTELSSLNFPR--INASLCIF--NNKIYVVGGDKYEYYINEIEVYDDK 511 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCc-eeeCCCCCccc--ccceEEEE--CCEEEEEcCCcCCcccceeEEEeCC
Confidence 55666666543 237888876531 11111111111 11112222 67777777654 467888876
Q ss_pred CC
Q psy307 586 TT 587 (1019)
Q Consensus 586 t~ 587 (1019)
+.
T Consensus 512 ~~ 513 (534)
T PHA03098 512 TN 513 (534)
T ss_pred CC
Confidence 64
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=82.45 E-value=1.1e+02 Score=35.89 Aligned_cols=153 Identities=14% Similarity=0.175 Sum_probs=82.6
Q ss_pred CCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEc---CCCCcEEEEeeCCCeEEEEecCCC-----
Q psy307 297 QGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWF---PKSAHLLLSCSMDCRVKLWEVYKE----- 368 (1019)
Q Consensus 297 ~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fs---pd~g~lLaSgs~Dg~I~IWdl~~~----- 368 (1019)
....++.|+..|.++++...... +-+..++-. ..-..+|..|..- +......++.=.-..+.||.+...
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~--~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNE--FQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CccEEEEeccccEEEEEccCCCC--CCCccEEEE-EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcc
Confidence 34678899999999999764322 222222111 1223577776642 222222333344566666666211
Q ss_pred ---cEEEEEecccCc--cEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcc--ccccEeE
Q psy307 369 ---RRCVRTYYGHRQ--AVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG--HRQAVRD 441 (1019)
Q Consensus 369 ---~~~~~~~~gh~~--~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~--H~~~V~s 441 (1019)
.-.+.....|.- ....++.-|-| ...+..+|..-+.||.+.+++- ..-...+.+.+ +.++
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fg---------g~~~~~~IcVQS~DG~L~~feq-e~~~f~~~lp~~llPgP--- 179 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFG---------GVKGRDFICVQSMDGSLSFFEQ-ESFAFSRFLPDFLLPGP--- 179 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECC---------CCCCceEEEEEecCceEEEEeC-CcEEEEEEcCCCCCCcC---
Confidence 011222222221 11222222211 1223578999999999999985 22222233332 3344
Q ss_pred EEEecCCCEEEEEEcCCeEEEEEC
Q psy307 442 ICFNNTGTNFISAGYDRYLKLWDT 465 (1019)
Q Consensus 442 l~fspdg~~l~S~s~Dg~I~lWDl 465 (1019)
++|.+....|++++.+..|.-|..
T Consensus 180 l~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 180 LCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred eEEeecCCEEEEecCceeEEEecH
Confidence 488888889999999988888865
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=81.34 E-value=14 Score=45.00 Aligned_cols=73 Identities=12% Similarity=0.253 Sum_probs=45.9
Q ss_pred CcEEEEEeCCCcEEEEEccC---CC-eEEEEEcc-c--------------------cccEeEEEEec----CCCEEEEEE
Q psy307 405 AHLLLSCSMDCRVKLWEVYK---EH-RCVRTYYG-H--------------------RQAVRDICFNN----TGTNFISAG 455 (1019)
Q Consensus 405 ~~~L~sgs~Dg~I~IWDl~~---~~-~~~~~l~~-H--------------------~~~V~sl~fsp----dg~~l~S~s 455 (1019)
+..++.+..||.+....... .+ ........ + .+.+..++++. +..++++.+
T Consensus 158 ~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~ 237 (547)
T PF11715_consen 158 EANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLS 237 (547)
T ss_dssp SSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEE
T ss_pred CCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEe
Confidence 35777888898888887753 22 22221111 1 23455566665 677899999
Q ss_pred cCCeEEEEECCCCceEEEEecC
Q psy307 456 YDRYLKLWDTESGECISRFTSR 477 (1019)
Q Consensus 456 ~Dg~I~lWDl~t~~~i~~~~~~ 477 (1019)
.|+++|+||+.+++++.+....
T Consensus 238 ~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 238 RDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTSEEEEEETTTTCEEEEEETT
T ss_pred CCCeEEEEECCCCeEEEEeccc
Confidence 9999999999999998877654
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1019 | ||||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 8e-24 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 9e-24 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-23 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-23 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-23 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 3e-23 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 3e-23 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 3e-23 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 3e-23 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-23 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 3e-23 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-23 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 3e-23 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 4e-23 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 4e-23 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 4e-23 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 4e-23 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 4e-17 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 8e-13 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 7e-12 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 7e-10 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 9e-10 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 1e-09 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 2e-09 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 5e-09 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 5e-05 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 1e-08 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 2e-08 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 2e-08 | ||
| 3acp_A | 417 | Crystal Structure Of Yeast Rpn14, A Chaperone Of Th | 2e-08 | ||
| 3vl1_A | 420 | Crystal Structure Of Yeast Rpn14 Length = 420 | 2e-08 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 4e-08 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 4e-08 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 4e-08 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 4e-08 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 1e-07 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 1e-07 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 1e-06 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 6e-04 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 3e-06 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 2e-05 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 3e-06 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 4e-06 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 4e-06 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 5e-06 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 6e-06 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 6e-05 | ||
| 3a98_B | 203 | Crystal Structure Of The Complex Of The Interacting | 7e-06 | ||
| 2vsz_A | 149 | Crystal Structure Of The Elmo1 Ph Domain Length = 1 | 7e-06 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-05 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-05 | ||
| 3zwl_B | 369 | Structure Of Eukaryotic Translation Initiation Fact | 2e-05 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 2e-05 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 2e-05 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 6e-05 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 2e-05 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 6e-05 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-05 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 2e-05 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 2e-05 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 2e-05 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 3e-05 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 3e-05 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 3e-05 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 4e-05 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 1e-04 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 5e-04 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-04 | ||
| 3jpx_A | 402 | Eed: A Novel Histone Trimethyllysine Binder Within | 3e-04 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 4e-04 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 4e-04 | ||
| 2qxv_A | 361 | Structural Basis Of Ezh2 Recognition By Eed Length | 4e-04 | ||
| 3iiy_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 5e-04 | ||
| 3jzn_A | 366 | Structure Of Eed In Apo Form Length = 366 | 5e-04 | ||
| 3iiw_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 5e-04 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 5e-04 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 5e-04 | ||
| 4g56_B | 357 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 6e-04 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 7e-04 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 7e-04 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 7e-04 |
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417 | Back alignment and structure |
|
| >pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3A98|B Chain B, Crystal Structure Of The Complex Of The Interacting Regions Of Dock2 And Elmo1 Length = 203 | Back alignment and structure |
|
| >pdb|2VSZ|A Chain A, Crystal Structure Of The Elmo1 Ph Domain Length = 149 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361 | Back alignment and structure |
|
| >pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366 | Back alignment and structure |
|
| >pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1019 | |||
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.98 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.98 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.98 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.98 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.98 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.98 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.98 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.98 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.98 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.97 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.97 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.97 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.97 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.97 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.97 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.97 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.97 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.97 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.97 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.96 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.96 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.96 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.96 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.96 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.96 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.95 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.95 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.95 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.95 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.94 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.94 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.94 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.94 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.94 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.94 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.93 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.93 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.93 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.93 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.93 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.93 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.93 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.92 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.91 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.91 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.91 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.9 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.89 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.87 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.87 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.85 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.84 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.84 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.83 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.83 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.82 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.81 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.81 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.8 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.8 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.8 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.79 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.79 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.78 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.78 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.77 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.77 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.76 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.76 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.74 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.73 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.73 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.72 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.72 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.72 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.7 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.7 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.69 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.68 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.68 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.68 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.65 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.65 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.63 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.6 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.59 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.58 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.58 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.57 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.53 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.53 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.53 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.52 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.51 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.51 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.5 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.48 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.47 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.45 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.44 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.44 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 99.39 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.38 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.35 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.35 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.34 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.33 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.33 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.33 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.32 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.27 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.27 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.24 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.24 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.24 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.23 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.22 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.19 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.18 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.17 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.17 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.17 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.14 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.13 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.11 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.1 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.09 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.08 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.07 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.06 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.05 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.01 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.0 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.0 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.97 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.96 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.89 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.88 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.88 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.84 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.8 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.78 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.76 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.73 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.7 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.7 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.64 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.63 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.61 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.57 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.56 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.52 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.5 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.48 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.46 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.46 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.45 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.31 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.28 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.28 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.27 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.24 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.23 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.19 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.19 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.18 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.15 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.09 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.08 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.01 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.0 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.92 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.88 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.86 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.82 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.8 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.8 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.78 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.77 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.76 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.72 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.71 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.69 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.66 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.65 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.65 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.64 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.6 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.57 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.53 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.49 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.48 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.46 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.45 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.45 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.36 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.35 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.35 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.35 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.33 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.31 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.3 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.26 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.22 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.16 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.13 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.11 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.04 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.02 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.98 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.9 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.88 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.86 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.72 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.7 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.61 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.59 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.55 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.5 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.48 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.21 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.2 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.11 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 95.9 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 95.88 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 95.8 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 95.8 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 95.72 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 95.71 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 95.42 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.33 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 95.19 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 94.79 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 94.69 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.61 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 94.19 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 93.93 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 93.02 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 92.99 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 92.91 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 92.72 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 92.61 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 92.32 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 92.29 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 92.26 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 91.75 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 91.64 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 91.58 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 90.92 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 90.84 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 89.72 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 89.36 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 89.3 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 88.93 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 88.5 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 87.87 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 85.96 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 85.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 85.52 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 82.55 |
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=390.20 Aligned_cols=402 Identities=15% Similarity=0.162 Sum_probs=306.4
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC-CcEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-ERRC 371 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~-~~~~ 371 (1019)
.++++|+.++++. +..+.+|+... .+...++.+|.+.|++++|+|+ +.+|+||+.||+|+|||+.. ...+
T Consensus 25 ~~spdg~~l~~~~-~~~v~l~~~~~-------~~~~~~~~~h~~~v~~~~~spd-g~~lasg~~d~~v~lWd~~~~~~~~ 95 (611)
T 1nr0_A 25 GNTPAGDKIQYCN-GTSVYTVPVGS-------LTDTEIYTEHSHQTTVAKTSPS-GYYCASGDVHGNVRIWDTTQTTHIL 95 (611)
T ss_dssp EECTTSSEEEEEE-TTEEEEEETTC-------SSCCEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEESSSTTCCE
T ss_pred eeCCCCCEEEeCC-CCEEEEecCCC-------cccCeEecCCCCceEEEEECCC-CcEEEEEeCCCCEEEeECCCCccee
Confidence 4688999999986 56999998753 3457789999999999999996 89999999999999999853 3345
Q ss_pred EEEecccCccEeEEEEcCCCCcee-------------------------------EEEeecCCCCcEEEEEeCCCcEEEE
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFI-------------------------------SAIRWFPKSAHLLLSCSMDCRVKLW 420 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~v-------------------------------s~i~~~p~~~~~L~sgs~Dg~I~IW 420 (1019)
...+.+|.+.|.+++|+|+|..++ .+++|+|+.+..|++|+.|++|++|
T Consensus 96 ~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lw 175 (611)
T 1nr0_A 96 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF 175 (611)
T ss_dssp EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEE
T ss_pred eEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEE
Confidence 667889999999999999987553 4567888887789999999999999
Q ss_pred EccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEe--------cCCceEEEEEecCCCee
Q psy307 421 EVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFT--------SRKVAYCVKFHPDEDKQ 492 (1019)
Q Consensus 421 Dl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~--------~~~~v~~v~~~p~~~~~ 492 (1019)
|. ...++...+.+|...|.+++|+|+|++|++++.|++|++||+.+++++..+. +...+.+++|+|++..+
T Consensus 176 d~-~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 254 (611)
T 1nr0_A 176 EG-PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 254 (611)
T ss_dssp ET-TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEE
T ss_pred EC-CCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEE
Confidence 98 5678888999999999999999999999999999999999999999988883 45689999999998755
Q ss_pred ee----------ccCCC--------------------------------------------ceeeeCCCCCcccEEEEcC
Q psy307 493 HL----------DIPVD--------------------------------------------MKYIADPTMHSMPAVTSSP 518 (1019)
Q Consensus 493 ~~----------~~~~~--------------------------------------------~~~i~~~~~~~i~~v~~sp 518 (1019)
+. +.... .......|...|.+++|+|
T Consensus 255 ~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp 334 (611)
T 1nr0_A 255 ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA 334 (611)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC
Confidence 43 11110 0012235667899999999
Q ss_pred CCCEEEEEecCCeEEEEEccCcccccce----------------------------e-----------------EEecc-
Q psy307 519 NNKWLACQSMDNKILIFSALNRFKLNRK----------------------------K-----------------TFEGH- 552 (1019)
Q Consensus 519 dg~~Lasgs~Dg~I~iwd~~~~~~~~~~----------------------------~-----------------~l~gh- 552 (1019)
+|++|++++.|++|++||+.++...... + .+.++
T Consensus 335 dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~ 414 (611)
T 1nr0_A 335 DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQP 414 (611)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCE
T ss_pred CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCC
Confidence 9999999999999999998754221100 0 00000
Q ss_pred -------------------------------ccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--eeeeeccCCC
Q psy307 553 -------------------------------MVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKL--FKKWKAHDGV 599 (1019)
Q Consensus 553 -------------------------------~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~--l~~l~~h~~~ 599 (1019)
.....+.+++|+|||++|++|+.||+|+|||+.++.. +.. .+|...
T Consensus 415 ~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~ 493 (611)
T 1nr0_A 415 LGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAE 493 (611)
T ss_dssp EEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSC
T ss_pred cEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCc
Confidence 0013467899999999999999999999999987654 334 689999
Q ss_pred EEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeee--ccccCCceeecccccccchhhhhhhcccccCCCceeEEEee
Q psy307 600 CISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVE--MEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFS 677 (1019)
Q Consensus 600 V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e--~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~s 677 (1019)
|.+++|+|++ .+|++++.|++|++|.-....+.... ...+.. .+....+++...+++..+
T Consensus 494 v~~v~fspdg-~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~-----------------~V~~v~fspdg~~lasgs 555 (611)
T 1nr0_A 494 ITSVAFSNNG-AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA-----------------KVACVSWSPDNVRLATGS 555 (611)
T ss_dssp EEEEEECTTS-SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS-----------------CEEEEEECTTSSEEEEEE
T ss_pred eEEEEECCCC-CEEEEEcCCCCEEEEEcCCCCceeeeeeeeeccc-----------------ceeEEEECCCCCEEEEEE
Confidence 9999999998 69999999999977643321222111 000111 111223333344555555
Q ss_pred cCCCceEEeccccc--c-----cc-CCceEEEEecCCccHHHHHhhcCCCchhhHHH
Q psy307 678 ETNNKNYITEKNRN--E-----IK-NGSVLRLAFSASKTADDILSKLSDKNASLEEK 726 (1019)
Q Consensus 678 d~~~~~~it~~~~~--~-----I~-ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~~ 726 (1019)
.++...+|...... . .| .+.|.+++|+|++ + |++++.|++|+||+.
T Consensus 556 ~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~--~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 556 LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--T-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp TTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETT--E-EEEEETTSCEEEEEC
T ss_pred CCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCC--E-EEEecCCCCEEEEec
Confidence 55556666654322 1 25 6889999999998 5 999999999999975
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=365.15 Aligned_cols=406 Identities=22% Similarity=0.353 Sum_probs=309.0
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
+++++|+++++++.|+.|++|+.. .++++++.+|.+.|++++|+|+ +.+|++|+.|++|+|||+ .++++
T Consensus 23 a~spdg~~las~~~d~~v~iWd~~--------~~~~~~l~gh~~~V~~l~fspd-g~~las~~~d~~i~vWd~--~~~~~ 91 (577)
T 2ymu_A 23 AFSPDGQTIASASDDKTVKLWNRN--------GQLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNR--NGQLL 91 (577)
T ss_dssp EECTTSSCEEEEETTSEEEEECTT--------SCEEEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEET--TSCEE
T ss_pred EECCCCCEEEEEeCCCEEEEEECC--------CCEEEEEeCCCCCEEEEEECCC-CCEEEEEeCCCEEEEEEC--CCCEE
Confidence 467899999999999999999743 3578899999999999999996 889999999999999997 35678
Q ss_pred EEecccCccEeEEEEcCCCCceeEE-------------------------------------------------------
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISA------------------------------------------------------- 397 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~------------------------------------------------------- 397 (1019)
..+.+|...|.+++|+|++..++++
T Consensus 92 ~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (577)
T 2ymu_A 92 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ 171 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSC
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceecccccee
Confidence 8999999999999999999877543
Q ss_pred --------------EeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEE
Q psy307 398 --------------IRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLW 463 (1019)
Q Consensus 398 --------------i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lW 463 (1019)
+.|+| ++.+|++++.||.|++||. .++.+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 172 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~w~~--~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w 248 (577)
T 2ymu_A 172 LLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 248 (577)
T ss_dssp EEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT--TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred eeeeccCCCcceeeeeecC-CCCEEEEEcCCCEEEEEeC--CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 11222 2457899999999999996 567888899999999999999999999999999999999
Q ss_pred ECCCCceEEEEec-CCceEEEEEecCCCeeeecc----------CCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeE
Q psy307 464 DTESGECISRFTS-RKVAYCVKFHPDEDKQHLDI----------PVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKI 532 (1019)
Q Consensus 464 Dl~t~~~i~~~~~-~~~v~~v~~~p~~~~~~~~~----------~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I 532 (1019)
|. +++.+..+.. ...+.+++|+|++..++... ..........+...+.+++++|++++|++++.|+.|
T Consensus 249 ~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i 327 (577)
T 2ymu_A 249 NR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 327 (577)
T ss_dssp CT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeE
Confidence 96 4566666664 46789999999987655422 222233345567789999999999999999999999
Q ss_pred EEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcE
Q psy307 533 LIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSK 612 (1019)
Q Consensus 533 ~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~ 612 (1019)
++||.... ....+.+|. ..+.+++|+|+|++|++|+.||.|++||. +++.+..+.+|...|.+++|+|++ .+
T Consensus 328 ~~w~~~~~----~~~~~~~~~--~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg-~~ 399 (577)
T 2ymu_A 328 KLWNRNGQ----HLQTLTGHS--SSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG-QT 399 (577)
T ss_dssp EEEETTSC----EEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTS-SC
T ss_pred EEEeCCCC----eeEEEeCCC--CCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCC-CE
Confidence 99998653 345667776 67999999999999999999999999994 678899999999999999999998 68
Q ss_pred EEEEeCCCcEEEEeccceeeeeeeccccCCcee--ec--ccccccchhhhhhhcccc--------------------cCC
Q psy307 613 VVTAGWDAATAKVQDANIVKIAVEMEKQVPQLY--QF--NQTLTLSSIIQEICSGWS--------------------LSD 668 (1019)
Q Consensus 613 l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~--~l--~~~~~LSs~~~~~~~~ws--------------------ls~ 668 (1019)
|++++.|+.|++| +.+- +......++...+. .+ +.....+...+..+..|+ +++
T Consensus 400 l~~~~~d~~v~~~-~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~sp 477 (577)
T 2ymu_A 400 IASASDDKTVKLW-NRNG-QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP 477 (577)
T ss_dssp EEEEETTSEEEEE-CTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECT
T ss_pred EEEEeCCCEEEEE-eCCC-CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcC
Confidence 9999999999765 4432 22222222222211 11 111111111222223333 222
Q ss_pred CceeEEEeecCCCceEEeccccccc-----cCCceEEEEecCCccHHHHHhhcCCCchhhHHH
Q psy307 669 SEQYALQFSETNNKNYITEKNRNEI-----KNGSVLRLAFSASKTADDILSKLSDKNASLEEK 726 (1019)
Q Consensus 669 ~e~~al~~sd~~~~~~it~~~~~~I-----~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~~ 726 (1019)
...+++..+.+....+|.. ++..+ |.+.|++++|+|++ +.|++++.|++|+||+.
T Consensus 478 d~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg--~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 478 DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG--QTIASASDDKTVKLWNR 537 (577)
T ss_dssp TSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEEEECT
T ss_pred CCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCC--CEEEEEECcCEEEEEeC
Confidence 2223333333333444442 22222 68899999999998 78999999999999984
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-37 Score=355.24 Aligned_cols=288 Identities=23% Similarity=0.447 Sum_probs=251.4
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
...+.||.++|++++|+|+ +.+|++|+.||+|+|||+ ..+.+..++.+|...|.+++|+|++ .+
T Consensus 101 ~~~l~gh~~~V~~~~~~p~-~~~l~s~s~Dg~i~vwd~-~~~~~~~~l~~h~~~V~~v~~~~~~--------------~~ 164 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDY-ETGDFERTLKGHTDSVQDISFDHSG--------------KL 164 (410)
T ss_dssp SCEEECCSSCEEEEEECSS-SSEEEEEESSSCEEEEET-TTCCCCEEECCCSSCEEEEEECTTS--------------SE
T ss_pred eEeecccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEEC-CCCcEEEEEeccCCcEEEEEEcCCC--------------CE
Confidence 4578999999999999996 789999999999999999 5567788999999999999999998 69
Q ss_pred EEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEec
Q psy307 408 LLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHP 487 (1019)
Q Consensus 408 L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p 487 (1019)
|++|+.||+|++||+ ....++..+.+|...|.+++|+|++++|++|+.|++|++||++++.++.++..+.
T Consensus 165 l~sgs~D~~i~iwd~-~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~--------- 234 (410)
T 1vyh_C 165 LASCSADMTIKLWDF-QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR--------- 234 (410)
T ss_dssp EEEEETTSCCCEEET-TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS---------
T ss_pred EEEEeCCCeEEEEeC-CCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCC---------
Confidence 999999999999999 6677889999999999999999999999999999999999999999887775432
Q ss_pred CCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCC-
Q psy307 488 DEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPD- 566 (1019)
Q Consensus 488 ~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspd- 566 (1019)
..+.++.++|+|.+|++|+.||.|++||+.++ .....+.+|. ..|.+++|+|+
T Consensus 235 ---------------------~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~---~~~~~~~~h~--~~v~~~~~~~~~ 288 (410)
T 1vyh_C 235 ---------------------EWVRMVRPNQDGTLIASCSNDQTVRVWVVATK---ECKAELREHR--HVVECISWAPES 288 (410)
T ss_dssp ---------------------SCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCS--SCEEEEEECCSC
T ss_pred ---------------------ccEEEEEECCCCCEEEEEcCCCeEEEEECCCC---ceeeEecCCC--ceEEEEEEcCcc
Confidence 44667788889999999999999999999876 4456777887 77999999996
Q ss_pred -------------------CCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEec
Q psy307 567 -------------------MSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQD 627 (1019)
Q Consensus 567 -------------------g~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd 627 (1019)
|.+|++|+.||+|++||+.+++++..+.+|.+.|.+++|+|++ .+|++|+.||+|++| +
T Consensus 289 ~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vw-d 366 (410)
T 1vyh_C 289 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVW-D 366 (410)
T ss_dssp GGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS-SCEEEEETTTEEEEE-C
T ss_pred cccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCC-CEEEEEeCCCeEEEE-E
Confidence 6799999999999999999999999999999999999999988 689999999999776 2
Q ss_pred cceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCc
Q psy307 628 ANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASK 707 (1019)
Q Consensus 628 ~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~ 707 (1019)
.... . ....+ ..|.+.|.+++|+|++
T Consensus 367 ~~~~--------------------------------------~-~~~~~---------------~~h~~~v~~l~~~~~~ 392 (410)
T 1vyh_C 367 YKNK--------------------------------------R-CMKTL---------------NAHEHFVTSLDFHKTA 392 (410)
T ss_dssp CTTS--------------------------------------C-CCEEE---------------ECCSSCEEEEEECSSS
T ss_pred CCCC--------------------------------------c-eEEEE---------------cCCCCcEEEEEEcCCC
Confidence 2110 0 00011 0367789999999998
Q ss_pred cHHHHHhhcCCCchhhHH
Q psy307 708 TADDILSKLSDKNASLEE 725 (1019)
Q Consensus 708 ~a~~Ilt~~~d~~i~lw~ 725 (1019)
+.|++++.|++|++|+
T Consensus 393 --~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 393 --PYVVTGSVDQTVKVWE 408 (410)
T ss_dssp --SCEEEEETTSEEEEEC
T ss_pred --CEEEEEeCCCcEEEEe
Confidence 7899999999999996
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=353.26 Aligned_cols=291 Identities=24% Similarity=0.413 Sum_probs=252.8
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVR 373 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~ 373 (1019)
++++|+.+++++.|+.|++|+... .+.+.++.+|.+.|++++|+|+ +.+|++|+.||+|+|||+ ....++.
T Consensus 116 ~~p~~~~l~s~s~Dg~i~vwd~~~-------~~~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~D~~i~iwd~-~~~~~~~ 186 (410)
T 1vyh_C 116 FHPVFSVMVSASEDATIKVWDYET-------GDFERTLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDF-QGFECIR 186 (410)
T ss_dssp ECSSSSEEEEEESSSCEEEEETTT-------CCCCEEECCCSSCEEEEEECTT-SSEEEEEETTSCCCEEET-TSSCEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEECCC-------CcEEEEEeccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeC-CCCceeE
Confidence 677899999999999999998763 3457899999999999999995 789999999999999999 5667889
Q ss_pred EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE
Q psy307 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS 453 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S 453 (1019)
++.+|...|.+++|+|++ .+|++|+.|++|++||+ ..+.++..+.+|...|.++.|+|++.+|++
T Consensus 187 ~~~~h~~~V~~v~~~p~~--------------~~l~s~s~D~~i~~wd~-~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s 251 (410)
T 1vyh_C 187 TMHGHDHNVSSVSIMPNG--------------DHIVSASRDKTIKMWEV-QTGYCVKTFTGHREWVRMVRPNQDGTLIAS 251 (410)
T ss_dssp CCCCCSSCEEEEEECSSS--------------SEEEEEETTSEEEEEET-TTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred EEcCCCCCEEEEEEeCCC--------------CEEEEEeCCCeEEEEEC-CCCcEEEEEeCCCccEEEEEECCCCCEEEE
Confidence 999999999999999998 68999999999999999 567788899999999999999999999999
Q ss_pred EEcCCeEEEEECCCCceEEEEecC-CceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeE
Q psy307 454 AGYDRYLKLWDTESGECISRFTSR-KVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKI 532 (1019)
Q Consensus 454 ~s~Dg~I~lWDl~t~~~i~~~~~~-~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I 532 (1019)
|+.|++|++||+.++++...+..+ ..+.+++|+|+.......... ..........|.+|++|+.|+.|
T Consensus 252 ~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~g~~l~sgs~D~~i 320 (410)
T 1vyh_C 252 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT-----------GSETKKSGKPGPFLLSGSRDKTI 320 (410)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC-----------SCC-------CCEEEEEETTSEE
T ss_pred EcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc-----------cccccccCCCCCEEEEEeCCCeE
Confidence 999999999999999999888654 678899999986533221110 01112233468899999999999
Q ss_pred EEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcE
Q psy307 533 LIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSK 612 (1019)
Q Consensus 533 ~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~ 612 (1019)
++||+.++ .....+.+|. ..|.+++|+|+|++|++|+.||+|+|||+.+++++..+.+|...|++++|+|++ .+
T Consensus 321 ~iwd~~~~---~~~~~~~~h~--~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~ 394 (410)
T 1vyh_C 321 KMWDVSTG---MCLMTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA-PY 394 (410)
T ss_dssp EEEETTTT---EEEEEEECCS--SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSS-SC
T ss_pred EEEECCCC---ceEEEEECCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCC-CE
Confidence 99999887 4557788887 779999999999999999999999999999999999999999999999999998 58
Q ss_pred EEEEeCCCcEEEE
Q psy307 613 VVTAGWDAATAKV 625 (1019)
Q Consensus 613 l~s~s~Dg~I~iw 625 (1019)
|++||.||+|++|
T Consensus 395 l~sgs~D~~i~vW 407 (410)
T 1vyh_C 395 VVTGSVDQTVKVW 407 (410)
T ss_dssp EEEEETTSEEEEE
T ss_pred EEEEeCCCcEEEE
Confidence 9999999999777
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=359.31 Aligned_cols=376 Identities=22% Similarity=0.316 Sum_probs=298.7
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.+.++|+.+++++.|+.|++|+.. .+.+..+.+|.+.|.+++|+|+ +.+|++++.|+.|++||. ..+++
T Consensus 187 ~~~~~~~~l~~~~~d~~v~~w~~~--------~~~~~~~~~~~~~v~~~~~s~d-g~~l~~~~~d~~i~~w~~--~~~~~ 255 (577)
T 2ymu_A 187 AFSPDGQTIASASDDKTVKLWNRN--------GQLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNR--NGQLL 255 (577)
T ss_dssp EECTTSSCEEEEETTSEEEEECTT--------SCEEEEEECCSSCEEEEEECTT-SSCEEEEETTSCEEEECT--TSCEE
T ss_pred eecCCCCEEEEEcCCCEEEEEeCC--------CcEEEEEecCCCCEEEEEECCC-CCEEEEEeCCCEEEEEeC--CCCEE
Confidence 356789999999999999999743 3567889999999999999996 789999999999999996 34678
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
..+.+|...|.+++|+|++ ..|++++.|+.|++||. .++....+.+|...|.+++|+|+++.|+
T Consensus 256 ~~~~~~~~~v~~v~~~~d~--------------~~l~~~~~d~~i~~w~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 319 (577)
T 2ymu_A 256 QTLTGHSSSVNGVAFRPDG--------------QTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDGQTIA 319 (577)
T ss_dssp EEECCCSSCEEEEEECTTS--------------SEEEEEETTSCEEEEET--TSCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEEecCCCCEEEEEEcCCC--------------CEEEEEeCCCEEEEEeC--CCcEEEEEecCCCCeEEEEECCCCCEEE
Confidence 8899999999999999998 68999999999999996 4567888999999999999999999999
Q ss_pred EEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCC----------CceeeeCCCCCcccEEEEcCCCCE
Q psy307 453 SAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPV----------DMKYIADPTMHSMPAVTSSPNNKW 522 (1019)
Q Consensus 453 S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~----------~~~~i~~~~~~~i~~v~~spdg~~ 522 (1019)
+++.|++|++||...............+.+++|+|++..++..... ........+...|.+++|+|+|++
T Consensus 320 t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 399 (577)
T 2ymu_A 320 SASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT 399 (577)
T ss_dssp EEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSC
T ss_pred EEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCE
Confidence 9999999999998765543333345778999999998866553222 222233456778999999999999
Q ss_pred EEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEE
Q psy307 523 LACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCIS 602 (1019)
Q Consensus 523 Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~s 602 (1019)
|++++.|+.|++||... .....+.+|. ..|.+++|+||+++|++++.||.|++||. +++.+..+.+|...|.+
T Consensus 400 l~~~~~d~~v~~~~~~~----~~~~~~~~~~--~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~ 472 (577)
T 2ymu_A 400 IASASDDKTVKLWNRNG----QLLQTLTGHS--SSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRG 472 (577)
T ss_dssp EEEEETTSEEEEECTTC----CEEEEEECCS--SCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEE
T ss_pred EEEEeCCCEEEEEeCCC----CEEEEecCCC--CCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEE
Confidence 99999999999999643 3456778887 67999999999999999999999999995 67888999999999999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCc
Q psy307 603 TLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNK 682 (1019)
Q Consensus 603 l~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~ 682 (1019)
++|+|++ .+|++++.|++|++|. .+ .+......++...+.. ..+++...+++..+.+...
T Consensus 473 ~~~spd~-~~las~~~d~~i~iw~-~~-~~~~~~~~~h~~~v~~-----------------l~~s~dg~~l~s~~~dg~v 532 (577)
T 2ymu_A 473 VAFSPDG-QTIASASDDKTVKLWN-RN-GQLLQTLTGHSSSVRG-----------------VAFSPDGQTIASASDDKTV 532 (577)
T ss_dssp EEECTTS-CEEEEEETTSEEEEEE-TT-SCEEEEEECCSSCEEE-----------------EEECTTSSCEEEEETTSEE
T ss_pred EEEcCCC-CEEEEEeCCCEEEEEc-CC-CCEEEEEeCCCCCEEE-----------------EEEcCCCCEEEEEECcCEE
Confidence 9999998 6999999999997764 32 2233233332222211 1122222233333333344
Q ss_pred eEEecccccc-----ccCCceEEEEecCCccHHHHHhhcCCCchhhHH
Q psy307 683 NYITEKNRNE-----IKNGSVLRLAFSASKTADDILSKLSDKNASLEE 725 (1019)
Q Consensus 683 ~~it~~~~~~-----I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~ 725 (1019)
.+|.. .+.. -|.+.|++++|+||+ +.|++++.|++|++|+
T Consensus 533 ~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg--~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 533 KLWNR-NGQLLQTLTGHSSSVWGVAFSPDG--QTIASASSDKTVKLWN 577 (577)
T ss_dssp EEECT-TSCEEEEEECCSSCEEEEEECTTS--SCEEEEETTSCEEEEC
T ss_pred EEEeC-CCCEEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCCEEEEeC
Confidence 44442 2222 278999999999998 7899999999999995
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-36 Score=336.03 Aligned_cols=272 Identities=17% Similarity=0.290 Sum_probs=240.9
Q ss_pred CCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEe
Q psy307 296 YQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTY 375 (1019)
Q Consensus 296 ~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~ 375 (1019)
.+++.+++++.|+.|++|+..... .....++.||...|.+++|+|+ +.++++|+.|++|++||+ ..++++..+
T Consensus 46 ~~~~~l~tgs~D~~v~vW~~~~~~-----~~~~~~l~gh~~~v~~~~~~~~-~~~l~s~s~D~~i~lWd~-~~~~~~~~~ 118 (321)
T 3ow8_A 46 ENSETVVTGSLDDLVKVWKWRDER-----LDLQWSLEGHQLGVVSVDISHT-LPIAASSSLDAHIRLWDL-ENGKQIKSI 118 (321)
T ss_dssp ---CEEEEEETTSCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEET-TTTEEEEEE
T ss_pred CCCCEEEEEcCCCCEEEEECCCCC-----eeeeeeeccCCCCEEEEEECCC-CCEEEEEeCCCcEEEEEC-CCCCEEEEE
Confidence 467899999999999999875322 1345678999999999999996 789999999999999999 556788889
Q ss_pred cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEE
Q psy307 376 YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG 455 (1019)
Q Consensus 376 ~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s 455 (1019)
..|...+.+++|+|++ .+|++|+.||.|++||+ ..+.....+..|...|.+++|+|++++|++|+
T Consensus 119 ~~~~~~~~~~~~spdg--------------~~l~~g~~dg~v~i~~~-~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~ 183 (321)
T 3ow8_A 119 DAGPVDAWTLAFSPDS--------------QYLATGTHVGKVNIFGV-ESGKKEYSLDTRGKFILSIAYSPDGKYLASGA 183 (321)
T ss_dssp ECCTTCCCCEEECTTS--------------SEEEEECTTSEEEEEET-TTCSEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred eCCCccEEEEEECCCC--------------CEEEEEcCCCcEEEEEc-CCCceeEEecCCCceEEEEEECCCCCEEEEEc
Confidence 9999999999999999 69999999999999999 55566777888999999999999999999999
Q ss_pred cCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEE
Q psy307 456 YDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIF 535 (1019)
Q Consensus 456 ~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iw 535 (1019)
.||.|++||+++++++..+.. +...|.+++|+|++++|++++.||.|++|
T Consensus 184 ~dg~i~iwd~~~~~~~~~~~~------------------------------h~~~v~~l~~spd~~~l~s~s~dg~i~iw 233 (321)
T 3ow8_A 184 IDGIINIFDIATGKLLHTLEG------------------------------HAMPIRSLTFSPDSQLLVTASDDGYIKIY 233 (321)
T ss_dssp TTSCEEEEETTTTEEEEEECC------------------------------CSSCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred CCCeEEEEECCCCcEEEEEcc------------------------------cCCceeEEEEcCCCCEEEEEcCCCeEEEE
Confidence 999999999999988776653 23567788899999999999999999999
Q ss_pred EccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEE
Q psy307 536 SALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVT 615 (1019)
Q Consensus 536 d~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s 615 (1019)
|+... .....+.+|. ..|.+++|+|+|++|++|+.||+|+|||+.+++++.++.+|.+.|.+++|+|++ .+|++
T Consensus 234 d~~~~---~~~~~~~~h~--~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g-~~l~s 307 (321)
T 3ow8_A 234 DVQHA---NLAGTLSGHA--SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG-SKIVS 307 (321)
T ss_dssp ETTTC---CEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEE
T ss_pred ECCCc---ceeEEEcCCC--CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCC-CEEEE
Confidence 99876 3457788887 779999999999999999999999999999999999999999999999999998 68999
Q ss_pred EeCCCcEEEE
Q psy307 616 AGWDAATAKV 625 (1019)
Q Consensus 616 ~s~Dg~I~iw 625 (1019)
++.||+|++|
T Consensus 308 ~~~d~~i~vw 317 (321)
T 3ow8_A 308 VGDDQEIHIY 317 (321)
T ss_dssp EETTCCEEEE
T ss_pred EeCCCeEEEE
Confidence 9999999776
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=337.83 Aligned_cols=294 Identities=20% Similarity=0.318 Sum_probs=248.7
Q ss_pred cceeeeccCCCCeEEEEEcCC---CCcEEEEeeCCCeEEEEecCCCc-EEEEEecccCccEeEEEEcCCCCceeEEEeec
Q psy307 326 TQVHTWEGHTKGISAIRWFPK---SAHLLLSCSMDCRVKLWEVYKER-RCVRTYYGHRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd---~g~lLaSgs~Dg~I~IWdl~~~~-~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
.....+.+|.+.|++++|+|+ ++.+|+||+.|++|+||++.... .+...+.+|...|.+++|++++
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~---------- 92 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL---------- 92 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS----------
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC----------
Confidence 445677899999999999985 36799999999999999985443 3455789999999999999998
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceE
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY 481 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~ 481 (1019)
.++++|+.|++|++||+ ..++.+..+..|...+.+++|+|++++|++++.|+.|++||+++++....+..+
T Consensus 93 ----~~l~s~s~D~~i~lWd~-~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~---- 163 (321)
T 3ow8_A 93 ----PIAASSSLDAHIRLWDL-ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR---- 163 (321)
T ss_dssp ----SEEEEEETTSEEEEEET-TTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECS----
T ss_pred ----CEEEEEeCCCcEEEEEC-CCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCC----
Confidence 68999999999999999 667788889999999999999999999999999999999999998876655432
Q ss_pred EEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEE
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSL 561 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v 561 (1019)
...+.+++|+|+|++|++|+.||.|++||+.++ ..+..+.+|. ..|.++
T Consensus 164 --------------------------~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~---~~~~~~~~h~--~~v~~l 212 (321)
T 3ow8_A 164 --------------------------GKFILSIAYSPDGKYLASGAIDGIINIFDIATG---KLLHTLEGHA--MPIRSL 212 (321)
T ss_dssp --------------------------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCS--SCCCEE
T ss_pred --------------------------CceEEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEcccC--CceeEE
Confidence 234667888999999999999999999999887 4457788887 679999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccC
Q psy307 562 DFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQV 641 (1019)
Q Consensus 562 ~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v 641 (1019)
+|+|++++|++|+.||+|+|||+.+++.+..+.+|...|.+++|+|++ .+|++++.||+|++| +....+
T Consensus 213 ~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iw-d~~~~~--------- 281 (321)
T 3ow8_A 213 TFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD-THFVSSSSDKSVKVW-DVGTRT--------- 281 (321)
T ss_dssp EECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEE-ETTTTE---------
T ss_pred EEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEE-eCCCCE---------
Confidence 999999999999999999999999999999999999999999999998 699999999999776 221100
Q ss_pred CceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCch
Q psy307 642 PQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNA 721 (1019)
Q Consensus 642 ~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i 721 (1019)
....+. -|.+.|.+++|+|++ +.|++++.|++|
T Consensus 282 ------------------------------~~~~~~---------------~h~~~v~~v~~s~~g--~~l~s~~~d~~i 314 (321)
T 3ow8_A 282 ------------------------------CVHTFF---------------DHQDQVWGVKYNGNG--SKIVSVGDDQEI 314 (321)
T ss_dssp ------------------------------EEEEEC---------------CCSSCEEEEEECTTS--SEEEEEETTCCE
T ss_pred ------------------------------EEEEEc---------------CCCCcEEEEEECCCC--CEEEEEeCCCeE
Confidence 111111 256789999999998 679999999999
Q ss_pred hhHHHH
Q psy307 722 SLEEKT 727 (1019)
Q Consensus 722 ~lw~~~ 727 (1019)
++|+.+
T Consensus 315 ~vwd~p 320 (321)
T 3ow8_A 315 HIYDCP 320 (321)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 999753
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=334.37 Aligned_cols=274 Identities=20% Similarity=0.276 Sum_probs=241.0
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc---E
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER---R 370 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~---~ 370 (1019)
++++|+.+++++.|+.|++|+... .+.+..+.+|...|.+++|+|+ +.+|++|+.|+.|++|++.... .
T Consensus 63 ~s~d~~~l~s~s~Dg~v~iWd~~~-------~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~ 134 (340)
T 1got_B 63 WGTDSRLLLSASQDGKLIIWDSYT-------TNKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVR 134 (340)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTT-------CCEEEEEECSSSCEEEEEECTT-SSEEEEEETTCEEEEEETTTCSBSCE
T ss_pred ECCCCCEEEEEeCCCcEEEEECCC-------CCcceEeecCCccEEEEEECCC-CCEEEEEeCCCeEEEEECccCCCcce
Confidence 578899999999999999998653 3567889999999999999995 8899999999999999995432 5
Q ss_pred EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCE
Q psy307 371 CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTN 450 (1019)
Q Consensus 371 ~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~ 450 (1019)
....+.+|...|.++.|++++ .+++++.|++|++||+ ..+.++..+.+|.+.|.+++|+|++++
T Consensus 135 ~~~~~~~h~~~v~~~~~~~~~---------------~l~s~s~d~~i~~wd~-~~~~~~~~~~~h~~~v~~~~~~~~~~~ 198 (340)
T 1got_B 135 VSRELAGHTGYLSCCRFLDDN---------------QIVTSSGDTTCALWDI-ETGQQTTTFTGHTGDVMSLSLAPDTRL 198 (340)
T ss_dssp EEEEEECCSSCEEEEEEEETT---------------EEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred eEEEecCCCccEEEEEECCCC---------------cEEEEECCCcEEEEEC-CCCcEEEEEcCCCCceEEEEECCCCCE
Confidence 667788999999999998876 5899999999999999 667888999999999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC
Q psy307 451 FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN 530 (1019)
Q Consensus 451 l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg 530 (1019)
|++|+.|++|++||++++.++..+.. +...|.+++|+|++++|++|+.||
T Consensus 199 l~sg~~d~~v~~wd~~~~~~~~~~~~------------------------------h~~~v~~v~~~p~~~~l~s~s~d~ 248 (340)
T 1got_B 199 FVSGACDASAKLWDVREGMCRQTFTG------------------------------HESDINAICFFPNGNAFATGSDDA 248 (340)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEECC------------------------------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEeCCCcEEEEECCCCeeEEEEcC------------------------------CcCCEEEEEEcCCCCEEEEEcCCC
Confidence 99999999999999999988776653 234577788899999999999999
Q ss_pred eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCC
Q psy307 531 KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEP 610 (1019)
Q Consensus 531 ~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~ 610 (1019)
+|++||++.... ...+..+.....|.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++
T Consensus 249 ~v~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg- 324 (340)
T 1got_B 249 TCRLFDLRADQE---LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG- 324 (340)
T ss_dssp CEEEEETTTTEE---EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-
T ss_pred cEEEEECCCCcE---EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCC-
Confidence 999999987632 3344333333569999999999999999999999999999999999999999999999999998
Q ss_pred cEEEEEeCCCcEEEE
Q psy307 611 SKVVTAGWDAATAKV 625 (1019)
Q Consensus 611 ~~l~s~s~Dg~I~iw 625 (1019)
.+|+|||.||+|++|
T Consensus 325 ~~l~s~s~D~~i~iW 339 (340)
T 1got_B 325 MAVATGSWDSFLKIW 339 (340)
T ss_dssp SCEEEEETTSCEEEE
T ss_pred CEEEEEcCCccEEec
Confidence 689999999999887
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=330.52 Aligned_cols=303 Identities=19% Similarity=0.322 Sum_probs=240.8
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC----cEEEEEecccCccEeEEEEcCCCCceeEEEeec
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE----RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~----~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
.+..++.||.+.|++++|+|+++.+|+||+.|++|++|++... +.++..+.+|...|.+++|+|++
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg---------- 77 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG---------- 77 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS----------
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC----------
Confidence 4567899999999999999977799999999999999998432 34678899999999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEec-CCce
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTS-RKVA 480 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~-~~~v 480 (1019)
.+|++|+.|++|++||+ ..++++..+.+|...|.+++|+|++.+|++|+.|++|++||++. .++..+.. ...+
T Consensus 78 ----~~l~s~s~D~~v~~wd~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v 151 (319)
T 3frx_A 78 ----AYALSASWDKTLRLWDV-ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWV 151 (319)
T ss_dssp ----SEEEEEETTSEEEEEET-TTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCE
T ss_pred ----CEEEEEeCCCEEEEEEC-CCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcE
Confidence 69999999999999999 67788899999999999999999999999999999999999974 45555443 3455
Q ss_pred EEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEE
Q psy307 481 YCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560 (1019)
Q Consensus 481 ~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~ 560 (1019)
.++.+.|... ..+++..|++++.|+.|++||+.+. .....+.+|. ..|.+
T Consensus 152 ~~~~~~~~~~-------------------------~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~h~--~~v~~ 201 (319)
T 3frx_A 152 SQVRVVPNEK-------------------------ADDDSVTIISAGNDKMVKAWNLNQF---QIEADFIGHN--SNINT 201 (319)
T ss_dssp EEEEECCC-------------------------------CCEEEEEETTSCEEEEETTTT---EEEEEECCCC--SCEEE
T ss_pred EEEEEccCCC-------------------------CCCCccEEEEEeCCCEEEEEECCcc---hhheeecCCC--CcEEE
Confidence 6666655421 1235668999999999999999875 3456777887 77999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeecccc
Q psy307 561 LDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQ 640 (1019)
Q Consensus 561 v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~ 640 (1019)
++|+|+|++|++|+.||+|+|||+.+++.+..+..+ ..|.+++|+|++ .++++++.+ .+++| +.+.........
T Consensus 202 ~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~-~~la~~~~~-~i~v~-~~~~~~~~~~~~-- 275 (319)
T 3frx_A 202 LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNR-YWLAAATAT-GIKVF-SLDPQYLVDDLR-- 275 (319)
T ss_dssp EEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSS-SEEEEEETT-EEEEE-EETTEEEEEEEC--
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCC-CEEEEEcCC-CcEEE-EeCcCeeeeccC--
Confidence 999999999999999999999999999999998865 579999999998 577776655 46555 322211110000
Q ss_pred CCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCc
Q psy307 641 VPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKN 720 (1019)
Q Consensus 641 v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~ 720 (1019)
.. . ......+...|.+++|||++ +.|++++.|++
T Consensus 276 -------------------------------------~~-~------~~~~~~~~~~v~~~~~spdg--~~l~sg~~Dg~ 309 (319)
T 3frx_A 276 -------------------------------------PE-F------AGYSKAAEPHAVSLAWSADG--QTLFAGYTDNV 309 (319)
T ss_dssp -------------------------------------CC-C------TTCCGGGCCCEEEEEECTTS--SEEEEEETTSC
T ss_pred -------------------------------------cc-c------cccccCcCcceeEEEECCCC--CEEEEeecCce
Confidence 00 0 00011346678899999999 88999999999
Q ss_pred hhhHHH
Q psy307 721 ASLEEK 726 (1019)
Q Consensus 721 i~lw~~ 726 (1019)
|++|+.
T Consensus 310 i~vWd~ 315 (319)
T 3frx_A 310 IRVWQV 315 (319)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999974
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-35 Score=331.63 Aligned_cols=292 Identities=17% Similarity=0.239 Sum_probs=247.3
Q ss_pred CccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCC
Q psy307 324 PKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPK 403 (1019)
Q Consensus 324 p~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~ 403 (1019)
+.+...+++||.+.|++++|+|+ +.+|++|+.||+|+|||+ ..+..+..+..|...|.+++|+|++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d-~~~l~s~s~Dg~v~iWd~-~~~~~~~~~~~~~~~v~~~~~s~~~------------ 109 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDS-YTTNKVHAIPLRSSWVMTCAYAPSG------------ 109 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEET-TTCCEEEEEECSSSCEEEEEECTTS------------
T ss_pred cchhheeecCCCCceEEEEECCC-CCEEEEEeCCCcEEEEEC-CCCCcceEeecCCccEEEEEECCCC------------
Confidence 34567899999999999999996 889999999999999999 4556778889999999999999998
Q ss_pred CCcEEEEEeCCCcEEEEEccCCC---eEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCce
Q psy307 404 SAHLLLSCSMDCRVKLWEVYKEH---RCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVA 480 (1019)
Q Consensus 404 ~~~~L~sgs~Dg~I~IWDl~~~~---~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v 480 (1019)
.+|++|+.|+.|++|++.... .....+.+|.+.|.++.|++++. +++++.|++|++||+++++++..+..+
T Consensus 110 --~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h--- 183 (340)
T 1got_B 110 --NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGH--- 183 (340)
T ss_dssp --SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCC---
T ss_pred --CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCC---
Confidence 699999999999999996543 56778899999999999998874 899999999999999999887766532
Q ss_pred EEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEE
Q psy307 481 YCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560 (1019)
Q Consensus 481 ~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~ 560 (1019)
...|.+++|+|++++|++|+.||.|++||++++ .....+.+|. ..|.+
T Consensus 184 ---------------------------~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~---~~~~~~~~h~--~~v~~ 231 (340)
T 1got_B 184 ---------------------------TGDVMSLSLAPDTRLFVSGACDASAKLWDVREG---MCRQTFTGHE--SDINA 231 (340)
T ss_dssp ---------------------------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---SEEEEECCCS--SCEEE
T ss_pred ---------------------------CCceEEEEECCCCCEEEEEeCCCcEEEEECCCC---eeEEEEcCCc--CCEEE
Confidence 345677888889999999999999999999876 4457788887 67999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec--cCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeecc
Q psy307 561 LDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA--HDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEME 638 (1019)
Q Consensus 561 v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~--h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~ 638 (1019)
++|+|+|++|++|+.||+|++||+++++.+..+.. +...|.+++|+|++ .++++|+.||.|++|. ....
T Consensus 232 v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd-~~~~------- 302 (340)
T 1got_B 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWD-ALKA------- 302 (340)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEE-TTTC-------
T ss_pred EEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCC-CEEEEECCCCeEEEEE-cccC-------
Confidence 99999999999999999999999999988777653 33579999999998 6999999999997762 2110
Q ss_pred ccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCC
Q psy307 639 KQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSD 718 (1019)
Q Consensus 639 ~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d 718 (1019)
. ....+. -|.++|.+++|+|++ +.|++++.|
T Consensus 303 -------------------------------~-~~~~~~---------------~h~~~v~~~~~s~dg--~~l~s~s~D 333 (340)
T 1got_B 303 -------------------------------D-RAGVLA---------------GHDNRVSCLGVTDDG--MAVATGSWD 333 (340)
T ss_dssp -------------------------------C-EEEEEE---------------CCSSCEEEEEECTTS--SCEEEEETT
T ss_pred -------------------------------c-EeeEee---------------cCCCcEEEEEEcCCC--CEEEEEcCC
Confidence 0 001111 367889999999998 789999999
Q ss_pred CchhhHH
Q psy307 719 KNASLEE 725 (1019)
Q Consensus 719 ~~i~lw~ 725 (1019)
++|+||+
T Consensus 334 ~~i~iWd 340 (340)
T 1got_B 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred ccEEecC
Confidence 9999995
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=336.52 Aligned_cols=281 Identities=19% Similarity=0.288 Sum_probs=226.4
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCC---CCccC-CccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPP---DRCFL-PKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE 368 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~---~~~~l-p~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~ 368 (1019)
.++++|+.+++++ |.++++|+.... ..... ..........|..+|++++|+|+ ..|++|+.||+|+|||+..+
T Consensus 37 ~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~l~~~s~dg~v~lWd~~~~ 113 (344)
T 4gqb_B 37 RYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE--RGILVASDSGAVELWELDEN 113 (344)
T ss_dssp EECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT--TEEEEEETTSEEEEEEECTT
T ss_pred EECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC--CeEEEEECCCEEEEEeccCC
Confidence 4788999888776 778888863210 00111 11223334457789999999996 46889999999999999654
Q ss_pred cE---EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEe
Q psy307 369 RR---CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN 445 (1019)
Q Consensus 369 ~~---~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fs 445 (1019)
.. ......+|...|++++|+|+| ++|++|+.||+|++||+ ..++++..+.+|.+.|.+++|+
T Consensus 114 ~~~~~~~~~~~~H~~~V~~v~~spdg--------------~~l~sgs~d~~i~iwd~-~~~~~~~~~~~h~~~V~~~~~~ 178 (344)
T 4gqb_B 114 ETLIVSKFCKYEHDDIVSTVSVLSSG--------------TQAVSGSKDICIKVWDL-AQQVVLSSYRAHAAQVTCVAAS 178 (344)
T ss_dssp SSCEEEEEEEECCSSCEEEEEECTTS--------------SEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEEC
T ss_pred CceeEeeccccCCCCCEEEEEECCCC--------------CEEEEEeCCCeEEEEEC-CCCcEEEEEcCcCCceEEEEec
Confidence 32 223456899999999999999 69999999999999999 6788999999999999999999
Q ss_pred cCCC-EEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC-CCEE
Q psy307 446 NTGT-NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN-NKWL 523 (1019)
Q Consensus 446 pdg~-~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd-g~~L 523 (1019)
+++. .|++++.|++|++||++++++...+.... +...+.+++|+|+ +++|
T Consensus 179 ~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~p~~~~~l 230 (344)
T 4gqb_B 179 PHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA----------------------------PGYLPTSLAWHPQQSEVF 230 (344)
T ss_dssp SSCTTEEEEEETTSCEEEEETTSSSCEEECC--------------------------------CCCEEEEEECSSCTTEE
T ss_pred CCCCCceeeeccccccccccccccceeeeeecce----------------------------eeccceeeeecCCCCcce
Confidence 9985 68999999999999999998877654321 1234556777774 5788
Q ss_pred EEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEE
Q psy307 524 ACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM-SYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCIS 602 (1019)
Q Consensus 524 asgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg-~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~s 602 (1019)
++|+.||.|++||++++ ..+..+.+|. ..|.+++|+|+| ++|++|+.||+|+|||+.+++++ .+.+|.+.|++
T Consensus 231 ~sg~~dg~v~~wd~~~~---~~~~~~~~h~--~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~ 304 (344)
T 4gqb_B 231 VFGDENGTVSLVDTKST---SCVLSSAVHS--QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRD 304 (344)
T ss_dssp EEEETTSEEEEEESCC-----CCEEEECCS--SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEE
T ss_pred EEeccCCcEEEEECCCC---cEEEEEcCCC--CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEE
Confidence 99999999999999887 4557888987 779999999998 58999999999999999998765 56899999999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEE
Q psy307 603 TLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 603 l~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
++|+|++..+|+|||.||+|++|
T Consensus 305 v~~sp~~~~llas~s~D~~v~~w 327 (344)
T 4gqb_B 305 ATWSPLNHSLLTTVGWDHQVVHH 327 (344)
T ss_dssp EEECSSSTTEEEEEETTSCEEEE
T ss_pred EEEeCCCCeEEEEEcCCCeEEEE
Confidence 99999997788999999999766
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-35 Score=325.31 Aligned_cols=275 Identities=21% Similarity=0.268 Sum_probs=238.2
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.++++|+.+++++.|+.|++|+... ...+..+.+|..+|.+++|+|+ +.+|++|+.|++|++||+ ..++++
T Consensus 20 ~fsp~~~~l~s~~~dg~v~lWd~~~-------~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~s~d~~i~vwd~-~~~~~~ 90 (304)
T 2ynn_A 20 DFHPTEPWVLTTLYSGRVELWNYET-------QVEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRIRVFNY-NTGEKV 90 (304)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTT-------TEEEEEEECCSSCEEEEEEEGG-GTEEEEEETTSEEEEEET-TTCCEE
T ss_pred EECCCCCEEEEEcCCCcEEEEECCC-------CceeEEeeccCCcEEEEEEeCC-CCEEEEECCCCEEEEEEC-CCCcEE
Confidence 4678999999999999999998763 3567899999999999999995 889999999999999999 556778
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec-CCCEE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN-TGTNF 451 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp-dg~~l 451 (1019)
..+.+|...|.+++|+|++ .+|++|+.||+|++||+.....+...+.+|...|.+++|+| ++..|
T Consensus 91 ~~~~~h~~~v~~~~~~~~~--------------~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l 156 (304)
T 2ynn_A 91 VDFEAHPDYIRSIAVHPTK--------------PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156 (304)
T ss_dssp EEEECCSSCEEEEEECSSS--------------SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEE
T ss_pred EEEeCCCCcEEEEEEcCCC--------------CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEE
Confidence 8999999999999999998 68999999999999999777788889999999999999999 67899
Q ss_pred EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC--CCCEEEEEecC
Q psy307 452 ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP--NNKWLACQSMD 529 (1019)
Q Consensus 452 ~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp--dg~~Lasgs~D 529 (1019)
++|+.|++|++||++++.....+.. .+...+..+.++| ++.+|++|+.|
T Consensus 157 ~sgs~D~~v~iwd~~~~~~~~~~~~-----------------------------~~~~~v~~~~~~~~~~~~~l~s~s~D 207 (304)
T 2ynn_A 157 ASGCLDRTVKVWSLGQSTPNFTLTT-----------------------------GQERGVNYVDYYPLPDKPYMITASDD 207 (304)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEEC-----------------------------CCTTCEEEEEECCSTTCCEEEEEETT
T ss_pred EEEeCCCeEEEEECCCCCccceecc-----------------------------CCcCcEEEEEEEEcCCCCEEEEEcCC
Confidence 9999999999999987765444332 1223344555554 77899999999
Q ss_pred CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCC
Q psy307 530 NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609 (1019)
Q Consensus 530 g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~ 609 (1019)
++|++||+.++ .....+.+|. ..|.+++|+|++.+|++|+.||+|+|||+.+++++.++..|...+.+++|+|++
T Consensus 208 ~~i~iWd~~~~---~~~~~~~~h~--~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (304)
T 2ynn_A 208 LTIKIWDYQTK---SCVATLEGHM--SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282 (304)
T ss_dssp SEEEEEETTTT---EEEEEEECCS--SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTC
T ss_pred CeEEEEeCCCC---ccceeeCCCC--CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCC
Confidence 99999999887 4567888987 679999999999999999999999999999999999999999999999999988
Q ss_pred Cc-EEEEEeCCCcEEEE
Q psy307 610 PS-KVVTAGWDAATAKV 625 (1019)
Q Consensus 610 ~~-~l~s~s~Dg~I~iw 625 (1019)
.. ++++|+.||.+ +|
T Consensus 283 ~~~~~asg~~~g~~-~~ 298 (304)
T 2ynn_A 283 RKNYIASGFDNGFT-VL 298 (304)
T ss_dssp GGGCEEEEETTEEE-EE
T ss_pred CceEEEEecCCceE-EE
Confidence 54 47777766654 44
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=354.73 Aligned_cols=313 Identities=18% Similarity=0.258 Sum_probs=247.3
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCc----------------cC-----------------------Cccceeeecc
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRC----------------FL-----------------------PKTQVHTWEG 333 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~----------------~l-----------------------p~~~i~~l~g 333 (1019)
.++++|+++++++.|+.|+||+....... +. ..+.+.++.+
T Consensus 66 ~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~g 145 (611)
T 1nr0_A 66 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG 145 (611)
T ss_dssp EECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCC
T ss_pred EECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecC
Confidence 45678888888888888888876321100 00 1123456789
Q ss_pred CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC
Q psy307 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM 413 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~ 413 (1019)
|.+.|++++|+|++..+|++|+.|++|++||. ...++..++.+|...|.+++|+|+| .+|++|+.
T Consensus 146 h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~-~~~~~~~~l~~H~~~V~~v~fspdg--------------~~las~s~ 210 (611)
T 1nr0_A 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEG-PPFKFKSTFGEHTKFVHSVRYNPDG--------------SLFASTGG 210 (611)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTSCEEEEET-TTBEEEEEECCCSSCEEEEEECTTS--------------SEEEEEET
T ss_pred CCCCceEEEECCCCCeEEEEEeCCCeEEEEEC-CCCeEeeeeccccCceEEEEECCCC--------------CEEEEEEC
Confidence 99999999999975567999999999999998 5668889999999999999999999 69999999
Q ss_pred CCcEEEEEccCCCeEEEEEc-------cccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEe-----------
Q psy307 414 DCRVKLWEVYKEHRCVRTYY-------GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFT----------- 475 (1019)
Q Consensus 414 Dg~I~IWDl~~~~~~~~~l~-------~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~----------- 475 (1019)
|++|++||+ ..+.+...+. +|.+.|.+++|+|+|++|++++.|++|++||+++++++.++.
T Consensus 211 D~~i~lwd~-~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~ 289 (611)
T 1nr0_A 211 DGTIVLYNG-VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG 289 (611)
T ss_dssp TSCEEEEET-TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEE
T ss_pred CCcEEEEEC-CCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEE
Confidence 999999999 4555666663 799999999999999999999999999999999987765542
Q ss_pred ---------------------------------cCCceEEEEEecCCCeeee----------ccCCCce-----------
Q psy307 476 ---------------------------------SRKVAYCVKFHPDEDKQHL----------DIPVDMK----------- 501 (1019)
Q Consensus 476 ---------------------------------~~~~v~~v~~~p~~~~~~~----------~~~~~~~----------- 501 (1019)
+...+.+++|+|++..++. +......
T Consensus 290 ~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~ 369 (611)
T 1nr0_A 290 IIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATM 369 (611)
T ss_dssp EEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSC
T ss_pred EEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcce
Confidence 2346889999998765443 1100000
Q ss_pred ---------------------eeeC---------------------------------------------------CCCC
Q psy307 502 ---------------------YIAD---------------------------------------------------PTMH 509 (1019)
Q Consensus 502 ---------------------~i~~---------------------------------------------------~~~~ 509 (1019)
.+.. .+..
T Consensus 370 v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~ 449 (611)
T 1nr0_A 370 ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISY 449 (611)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSS
T ss_pred EEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCC
Confidence 0000 0123
Q ss_pred cccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCC-Cc
Q psy307 510 SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKT-TK 588 (1019)
Q Consensus 510 ~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t-~~ 588 (1019)
.+.+++|+|+|++|++|+.|++|++||+.++.. ..... .+|. ..|.+++|+|||++|++++.|++|++||+.+ ++
T Consensus 450 ~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~-~~~~~-~~h~--~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~ 525 (611)
T 1nr0_A 450 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV-SEVKT-IVHP--AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE 525 (611)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEEEETTEE-EEEEE-EECS--SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE
T ss_pred CceEEEEeCCCCEEEEeCCCCeEEEEEccCCce-eeeec-cCCC--CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCc
Confidence 456899999999999999999999999976421 12233 5665 6799999999999999999999999999988 66
Q ss_pred eeee--eeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 589 LFKK--WKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 589 ~l~~--l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
++.. +.+|.+.|.+++|+|++ .+|+++|.|++|++|.
T Consensus 526 ~~~~~~~~~H~~~V~~v~fspdg-~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 526 LAHTNSWTFHTAKVACVSWSPDN-VRLATGSLDNSVIVWN 564 (611)
T ss_dssp ESCCCCCCCCSSCEEEEEECTTS-SEEEEEETTSCEEEEE
T ss_pred eeeeeeeeecccceeEEEECCCC-CEEEEEECCCcEEEEE
Confidence 6554 34599999999999998 6999999999997763
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-35 Score=330.95 Aligned_cols=308 Identities=20% Similarity=0.334 Sum_probs=241.0
Q ss_pred cceeeeccCCC-CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE-EE-EecccCccEeEEEEcCCCCceeEEEeecC
Q psy307 326 TQVHTWEGHTK-GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC-VR-TYYGHRQAVRDICFNNTGTNFISAIRWFP 402 (1019)
Q Consensus 326 ~~i~~l~gH~~-~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~-~~-~~~gh~~~V~~i~fspdg~~~vs~i~~~p 402 (1019)
.++.++.+|.+ .|.+++|+|+ +.+|++|+.||+|+|||+...... .. ...+|...|.+++|+|++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~-g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g----------- 73 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPA-GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG----------- 73 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTT-SSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS-----------
T ss_pred EEeeeecCCCCCcEEEEEECCC-CCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC-----------
Confidence 56788999998 9999999996 889999999999999999554322 22 346899999999999998
Q ss_pred CCCcEEEEEeCCCcEEEEEccCCC-eEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceE
Q psy307 403 KSAHLLLSCSMDCRVKLWEVYKEH-RCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY 481 (1019)
Q Consensus 403 ~~~~~L~sgs~Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~ 481 (1019)
.+|++|+.|++|++||+.... .++..+.+|...|.+++|+|++++|++|+.|++|++||++++......
T Consensus 74 ---~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~------- 143 (345)
T 3fm0_A 74 ---NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV------- 143 (345)
T ss_dssp ---SEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEE-------
T ss_pred ---CEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEE-------
Confidence 699999999999999995543 567889999999999999999999999999999999999876432111
Q ss_pred EEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEE
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSL 561 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v 561 (1019)
.....+...|.+++|+|++.+|++++.|+.|++||..... ......+.+|. ..|.++
T Consensus 144 --------------------~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~-~~~~~~~~~h~--~~v~~l 200 (345)
T 3fm0_A 144 --------------------SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD-WVCCATLEGHE--STVWSL 200 (345)
T ss_dssp --------------------EEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTE-EEEEEEECCCS--SCEEEE
T ss_pred --------------------EEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCC-EEEEEEecCCC--CceEEE
Confidence 1112344667889999999999999999999999987652 12346778887 779999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCC---------------ceeeeeec-cCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 562 DFSPDMSYLISGDADGKCYIWDWKTT---------------KLFKKWKA-HDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 562 ~fspdg~~Lasgs~DG~I~IWDl~t~---------------~~l~~l~~-h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+|+|+|++|++|+.||+|+|||.... +++.++.+ |...|.+++|+|++ ..+++++.|+.|++|
T Consensus 201 ~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~vw 279 (345)
T 3fm0_A 201 AFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT-GALATACGDDAIRVF 279 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT-CCEEEEETTSCEEEE
T ss_pred EECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC-CEEEEEeCCCeEEEE
Confidence 99999999999999999999996321 23444554 88899999999998 589999999999877
Q ss_pred eccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecC
Q psy307 626 QDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSA 705 (1019)
Q Consensus 626 wd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSP 705 (1019)
..... ..+. ...+.+.. .....|.+.|.+++|+|
T Consensus 280 ~~~~~---------~~~~-------------------------~~~~~~~~------------~~~~~h~~~V~~v~~~p 313 (345)
T 3fm0_A 280 QEDPN---------SDPQ-------------------------QPTFSLTA------------HLHQAHSQDVNCVAWNP 313 (345)
T ss_dssp EECTT---------SCTT-------------------------SCCEEEEE------------EETTSSSSCEEEEEECS
T ss_pred EeCCC---------CCcc-------------------------eeeEEEEe------------eecccccCcEeEeEEeC
Confidence 32110 0000 00010000 00124778999999999
Q ss_pred CccHHHHHhhcCCCchhhHHH
Q psy307 706 SKTADDILSKLSDKNASLEEK 726 (1019)
Q Consensus 706 d~~a~~Ilt~~~d~~i~lw~~ 726 (1019)
++ ...|++++.||+|++|+.
T Consensus 314 ~~-~~~laS~s~Dg~v~~W~~ 333 (345)
T 3fm0_A 314 KE-PGLLASCSDDGEVAFWKY 333 (345)
T ss_dssp SS-TTEEEEEETTSCEEEEEE
T ss_pred CC-ceEEEEcCCCCcEEEEEe
Confidence 86 236889999999999983
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=326.74 Aligned_cols=275 Identities=18% Similarity=0.265 Sum_probs=239.3
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC-----
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE----- 368 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~----- 368 (1019)
++++|+.+++++.|+.|++|+... .+..+.+..|...|.+++|+|+ +.+|++|+.|+.|++|++...
T Consensus 72 ~s~d~~~l~s~s~Dg~v~vWd~~~-------~~~~~~~~~~~~~v~~~~~sp~-g~~lasg~~d~~i~v~~~~~~~~~~~ 143 (354)
T 2pbi_B 72 WCKDKRRIVSSSQDGKVIVWDSFT-------TNKEHAVTMPCTWVMACAYAPS-GCAIACGGLDNKCSVYPLTFDKNENM 143 (354)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTT-------CCEEEEEECSSSCCCEEEECTT-SSEEEEESTTSEEEEEECCCCTTCCS
T ss_pred ECCCCCEEEEEeCCCeEEEEECCC-------CCcceEEecCCCCEEEEEECCC-CCEEEEeeCCCCEEEEEEeccccccc
Confidence 577899999999999999998653 3567788999999999999995 899999999999999998432
Q ss_pred cEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec--
Q psy307 369 RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN-- 446 (1019)
Q Consensus 369 ~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp-- 446 (1019)
......+.+|...|.+++|+|++ ..|++|+.|++|++||+ ..++++..+.+|...|.+++|+|
T Consensus 144 ~~~~~~~~~h~~~v~~~~~~~~~--------------~~l~t~s~D~~v~lwd~-~~~~~~~~~~~h~~~v~~~~~~~~~ 208 (354)
T 2pbi_B 144 AAKKKSVAMHTNYLSACSFTNSD--------------MQILTASGDGTCALWDV-ESGQLLQSFHGHGADVLCLDLAPSE 208 (354)
T ss_dssp GGGCEEEEECSSCEEEEEECSSS--------------SEEEEEETTSEEEEEET-TTCCEEEEEECCSSCEEEEEECCCS
T ss_pred cccceeeeccCCcEEEEEEeCCC--------------CEEEEEeCCCcEEEEeC-CCCeEEEEEcCCCCCeEEEEEEeCC
Confidence 13456677899999999999988 68999999999999999 66778899999999999999987
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE
Q psy307 447 TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ 526 (1019)
Q Consensus 447 dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg 526 (1019)
+++.|++|+.||+|++||+++++++..+.. |...|.+++|+|++.+|+++
T Consensus 209 ~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~------------------------------h~~~v~~v~~~p~~~~l~s~ 258 (354)
T 2pbi_B 209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFET------------------------------HESDVNSVRYYPSGDAFASG 258 (354)
T ss_dssp SCCEEEEEETTSCEEEEETTTCCEEEEECC------------------------------CSSCEEEEEECTTSSEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEecC------------------------------CCCCeEEEEEeCCCCEEEEE
Confidence 468999999999999999999988776653 23457778888899999999
Q ss_pred ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEc
Q psy307 527 SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWH 606 (1019)
Q Consensus 527 s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~s 606 (1019)
+.|++|++||++... ....+..+.....+.+++|+|+|++|++|+.||.|+|||+.+++.+..+.+|.+.|.+++|+
T Consensus 259 s~D~~v~lwd~~~~~---~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s 335 (354)
T 2pbi_B 259 SDDATCRLYDLRADR---EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS 335 (354)
T ss_dssp ETTSCEEEEETTTTE---EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC
T ss_pred eCCCeEEEEECCCCc---EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEEC
Confidence 999999999998763 23444444333568899999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEE
Q psy307 607 PHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 607 p~~~~~l~s~s~Dg~I~iw 625 (1019)
|++ .+|++|+.||+|++|
T Consensus 336 pdg-~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 336 PDG-TAFCSGSWDHTLRVW 353 (354)
T ss_dssp TTS-SCEEEEETTSEEEEE
T ss_pred CCC-CEEEEEcCCCCEEec
Confidence 998 699999999999887
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-34 Score=318.14 Aligned_cols=258 Identities=19% Similarity=0.298 Sum_probs=219.4
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
+..++|++|.+.|++++|+|+ +.+|++|+.||+|+|||+ ..+.+++.+.+|..+|.+++|+|++
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~-~~~l~s~~~dg~v~lWd~-~~~~~~~~~~~~~~~v~~~~~~~~~-------------- 67 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVELWNY-ETQVEVRSIQVTETPVRAGKFIARK-------------- 67 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEET-TTTEEEEEEECCSSCEEEEEEEGGG--------------
T ss_pred eeEEeecCCCCceEEEEECCC-CCEEEEEcCCCcEEEEEC-CCCceeEEeeccCCcEEEEEEeCCC--------------
Confidence 456789999999999999996 889999999999999999 5567888999999999999999998
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceE-EEEecCCceEEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECI-SRFTSRKVAYCVK 484 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i-~~~~~~~~v~~v~ 484 (1019)
++|++|+.|++|++||+ ..++++..+.+|...|.+++|+|++++|++|+.|++|++||++++... ..+.
T Consensus 68 ~~l~s~s~d~~i~vwd~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~--------- 137 (304)
T 2ynn_A 68 NWIIVGSDDFRIRVFNY-NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--------- 137 (304)
T ss_dssp TEEEEEETTSEEEEEET-TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC---------
T ss_pred CEEEEECCCCEEEEEEC-CCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc---------
Confidence 69999999999999999 667788899999999999999999999999999999999999877432 3332
Q ss_pred EecCCCeeeeccCCCceeeeCCCCCcccEEEEcC-CCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEE
Q psy307 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP-NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDF 563 (1019)
Q Consensus 485 ~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~f 563 (1019)
.|...|.+++|+| ++..|++|+.|++|++||+...... .....+|. ..+..+.|
T Consensus 138 ---------------------~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~--~~~~~~~~--~~v~~~~~ 192 (304)
T 2ynn_A 138 ---------------------GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN--FTLTTGQE--RGVNYVDY 192 (304)
T ss_dssp ---------------------CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS--EEEECCCT--TCEEEEEE
T ss_pred ---------------------ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc--ceeccCCc--CcEEEEEE
Confidence 2345677778887 5789999999999999999765322 22223343 45788888
Q ss_pred cC--CCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeee
Q psy307 564 SP--DMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVE 636 (1019)
Q Consensus 564 sp--dg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e 636 (1019)
+| ++.+|++|+.||+|+|||+++++++.++.+|...|.+++|+|++ .+|++|+.||+|++| +....+....
T Consensus 193 ~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iW-d~~~~~~~~~ 265 (304)
T 2ynn_A 193 YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIW-NSSTYKVEKT 265 (304)
T ss_dssp CCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEE-ETTTCCEEEE
T ss_pred EEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCC-CEEEEEcCCCeEEEE-ECCCCceeee
Confidence 76 78899999999999999999999999999999999999999998 599999999999665 5544444433
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-34 Score=324.18 Aligned_cols=291 Identities=15% Similarity=0.201 Sum_probs=242.8
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
+...+++||.+.|++++|+|+ +.+|+||+.||+|+|||. ........+..|...|.+++|+|+|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d-~~~l~s~s~Dg~v~vWd~-~~~~~~~~~~~~~~~v~~~~~sp~g-------------- 118 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKD-KRRIVSSSQDGKVIVWDS-FTTNKEHAVTMPCTWVMACAYAPSG-------------- 118 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEET-TTCCEEEEEECSSSCCCEEEECTTS--------------
T ss_pred EEEEEecCCCCeEEEEEECCC-CCEEEEEeCCCeEEEEEC-CCCCcceEEecCCCCEEEEEECCCC--------------
Confidence 567899999999999999996 789999999999999998 4456677888899999999999999
Q ss_pred cEEEEEeCCCcEEEEEccCC-----CeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCce
Q psy307 406 HLLLSCSMDCRVKLWEVYKE-----HRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVA 480 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~-----~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v 480 (1019)
.+|++|+.|+.+++|++... ......+.+|...|.+++|+|++..|++++.|++|++||+++++++..+..+.
T Consensus 119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~-- 196 (354)
T 2pbi_B 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHG-- 196 (354)
T ss_dssp SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS--
T ss_pred CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCC--
Confidence 68999999999999998432 13456677899999999999999999999999999999999999888876542
Q ss_pred EEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC--CCCEEEEEecCCeEEEEEccCcccccceeEEeccccccce
Q psy307 481 YCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP--NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYA 558 (1019)
Q Consensus 481 ~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp--dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V 558 (1019)
..+.+++++| +|++|++|+.||.|++||++++ .....+.+|. ..|
T Consensus 197 ----------------------------~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~---~~~~~~~~h~--~~v 243 (354)
T 2pbi_B 197 ----------------------------ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG---QCVQAFETHE--SDV 243 (354)
T ss_dssp ----------------------------SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC---CEEEEECCCS--SCE
T ss_pred ----------------------------CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC---cEEEEecCCC--CCe
Confidence 2333444444 5789999999999999999887 4457788887 779
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc--CCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeee
Q psy307 559 CSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH--DGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVE 636 (1019)
Q Consensus 559 ~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h--~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e 636 (1019)
.+++|+|+|.+|++|+.||+|++||+++++.+..+..+ ...+.+++|+|++ .++++++.||+|++| +...
T Consensus 244 ~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vw-d~~~------ 315 (354)
T 2pbi_B 244 NSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG-RLLFAGYNDYTINVW-DVLK------ 315 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSCEEEE-ETTT------
T ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCC-CEEEEEECCCcEEEE-ECCC------
Confidence 99999999999999999999999999998887776543 3478999999998 699999999999776 2210
Q ss_pred ccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhc
Q psy307 637 MEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKL 716 (1019)
Q Consensus 637 ~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~ 716 (1019)
+... ..+ .-|.+.|.+++|+|++ +.|++++
T Consensus 316 --------------------------------~~~~-~~l---------------~~h~~~v~~l~~spdg--~~l~sgs 345 (354)
T 2pbi_B 316 --------------------------------GSRV-SIL---------------FGHENRVSTLRVSPDG--TAFCSGS 345 (354)
T ss_dssp --------------------------------CSEE-EEE---------------CCCSSCEEEEEECTTS--SCEEEEE
T ss_pred --------------------------------CceE-EEE---------------ECCCCcEEEEEECCCC--CEEEEEc
Confidence 0000 000 0367789999999999 7899999
Q ss_pred CCCchhhHH
Q psy307 717 SDKNASLEE 725 (1019)
Q Consensus 717 ~d~~i~lw~ 725 (1019)
.|++|++|+
T Consensus 346 ~D~~v~vW~ 354 (354)
T 2pbi_B 346 WDHTLRVWA 354 (354)
T ss_dssp TTSEEEEEC
T ss_pred CCCCEEecC
Confidence 999999994
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=321.34 Aligned_cols=285 Identities=21% Similarity=0.323 Sum_probs=231.4
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-EE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-RC 371 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~~ 371 (1019)
.++++|+.+++++.|+.|++|+...... ........+|.+.|++++|+|+ +.+|++|+.|++|+||++.... .+
T Consensus 23 ~~sp~g~~las~~~D~~i~iw~~~~~~~----~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~s~D~~v~iw~~~~~~~~~ 97 (345)
T 3fm0_A 23 AWNPAGTLLASCGGDRRIRIWGTEGDSW----ICKSVLSEGHQRTVRKVAWSPC-GNYLASASFDATTCIWKKNQDDFEC 97 (345)
T ss_dssp EECTTSSCEEEEETTSCEEEEEEETTEE----EEEEEECSSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECCC-EEE
T ss_pred EECCCCCEEEEEcCCCeEEEEEcCCCcc----eeeeeeccccCCcEEEEEECCC-CCEEEEEECCCcEEEEEccCCCeEE
Confidence 4678999999999999999998753211 0112234799999999999995 8899999999999999985443 57
Q ss_pred EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC--eEEEEEccccccEeEEEEecCCC
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH--RCVRTYYGHRQAVRDICFNNTGT 449 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~--~~~~~l~~H~~~V~sl~fspdg~ 449 (1019)
+..+.+|...|.+++|+|++ ++|++|+.|++|++||+.... .++..+.+|...|.+++|+|+++
T Consensus 98 ~~~~~~h~~~v~~v~~sp~~--------------~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 98 VTTLEGHENEVKSVAWAPSG--------------NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp EEEECCCSSCEEEEEECTTS--------------SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred EEEccCCCCCceEEEEeCCC--------------CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence 78899999999999999998 799999999999999996543 56778899999999999999999
Q ss_pred EEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC
Q psy307 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD 529 (1019)
Q Consensus 450 ~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D 529 (1019)
+|++++.|++|++||++++...... ....|...|.+++|+|+|++|++++.|
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~~~----------------------------~~~~h~~~v~~l~~sp~g~~l~s~s~D 215 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVCCA----------------------------TLEGHESTVWSLAFDPSGQRLASCSDD 215 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEE----------------------------EECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEeCCCcEEEEEecCCCEEEEE----------------------------EecCCCCceEEEEECCCCCEEEEEeCC
Confidence 9999999999999998776432111 112345678889999999999999999
Q ss_pred CeEEEEEccCcccc------------cceeEEec-cccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-------
Q psy307 530 NKILIFSALNRFKL------------NRKKTFEG-HMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKL------- 589 (1019)
Q Consensus 530 g~I~iwd~~~~~~~------------~~~~~l~g-h~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~------- 589 (1019)
++|++|+....... ..+..+.+ |. ..|.+++|+|++.+|++++.|+.|++|+...+..
T Consensus 216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~ 293 (345)
T 3fm0_A 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHS--RTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFS 293 (345)
T ss_dssp SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCS--SCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEE
T ss_pred CeEEEeccccCCCCccceeeccCCccceeEEecCCCC--CcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEE
Confidence 99999997432111 12233444 44 6799999999999999999999999999876431
Q ss_pred --eeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 590 --FKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 590 --l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
.....+|.+.|++++|+|+++.+|+|||.||+|++|.
T Consensus 294 ~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 294 LTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332 (345)
T ss_dssp EEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence 2233589999999999999867999999999997764
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=325.59 Aligned_cols=281 Identities=20% Similarity=0.316 Sum_probs=225.3
Q ss_pred CCCCCCCeeeeCCC------CCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecC
Q psy307 293 PTDYQGRSFLHPPH------DVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVY 366 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~------D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~ 366 (1019)
.++++|+.+++++. |+.+++|+...... .........+|...|++++|+|+ + .+++++.||+|+|||+.
T Consensus 49 ~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~---~~~~~~~~~~~~~~V~~~~~s~d-~-~~l~~s~dg~v~lWd~~ 123 (357)
T 4g56_B 49 RYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP---NESLCTAGVQTEAGVTDVAWVSE-K-GILVASDSGAVELWEIL 123 (357)
T ss_dssp EECSSSCEEEEEECSSSSSCCEEEEEESSCC------CGGGCSEEEECSSCEEEEEEETT-T-EEEEEETTSCEEEC---
T ss_pred EECCCCCEEEEEcCCCCccccCeEEEEECCCCCc---ceeEecccCCCCCCEEEEEEcCC-C-CEEEEECCCEEEEeecc
Confidence 57889999999987 66788886643221 22344566789999999999996 4 46678899999999995
Q ss_pred CCcEE---EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEE
Q psy307 367 KERRC---VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDIC 443 (1019)
Q Consensus 367 ~~~~~---~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~ 443 (1019)
..... .....+|...|.+++|+|++ ++|++|+.||.|++||+ ..+.++..+.+|...|.+++
T Consensus 124 ~~~~~~~~~~~~~~h~~~V~~v~~spdg--------------~~l~sgs~dg~v~iwd~-~~~~~~~~~~~h~~~v~~v~ 188 (357)
T 4g56_B 124 EKESLLVNKFAKYEHDDIVKTLSVFSDG--------------TQAVSGGKDFSVKVWDL-SQKAVLKSYNAHSSEVNCVA 188 (357)
T ss_dssp -----CCCCEEECCCSSCEEEEEECSSS--------------SEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEE
T ss_pred ccceeEEEeeccCCCCCCEEEEEECCCC--------------CEEEEEeCCCeEEEEEC-CCCcEEEEEcCCCCCEEEEE
Confidence 43321 13455899999999999999 69999999999999999 67788999999999999999
Q ss_pred EecCCC-EEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC-CC
Q psy307 444 FNNTGT-NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN-NK 521 (1019)
Q Consensus 444 fspdg~-~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd-g~ 521 (1019)
|++++. .+++++.|++|++||+++++++..+.. ..+...+.+++|+|+ +.
T Consensus 189 ~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~----------------------------~~~~~~v~~v~~sp~~~~ 240 (357)
T 4g56_B 189 ACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF----------------------------CASDTIPTSVTWHPEKDD 240 (357)
T ss_dssp ECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC----------------------------TTCCSCEEEEEECTTSTT
T ss_pred EccCCCceeeeeccCCceEEEECCCCceeeeeee----------------------------ccccccccchhhhhcccc
Confidence 999885 689999999999999998876543321 112344667777876 56
Q ss_pred EEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeeeeccCCCE
Q psy307 522 WLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM-SYLISGDADGKCYIWDWKTTKLFKKWKAHDGVC 600 (1019)
Q Consensus 522 ~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg-~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V 600 (1019)
+|++|+.|+.|++||++++ .....+.+|. ..|.+++|+|++ ++|++|+.||+|+|||+.+++++..+ +|.+.|
T Consensus 241 ~la~g~~d~~i~~wd~~~~---~~~~~~~~~~--~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V 314 (357)
T 4g56_B 241 TFACGDETGNVSLVNIKNP---DSAQTSAVHS--QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFV 314 (357)
T ss_dssp EEEEEESSSCEEEEESSCG---GGCEEECCCS--SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCE
T ss_pred eEEEeecccceeEEECCCC---cEeEEEeccc--eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCE
Confidence 8899999999999999887 4457788887 679999999987 58999999999999999999887765 799999
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEec
Q psy307 601 ISTLWHPHEPSKVVTAGWDAATAKVQD 627 (1019)
Q Consensus 601 ~sl~~sp~~~~~l~s~s~Dg~I~iwwd 627 (1019)
++++|+|.++.+|+|||.||+|++|.-
T Consensus 315 ~~vafsP~d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 315 TGVAWSPLDHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp EEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred EEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence 999999954479999999999988753
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-34 Score=375.31 Aligned_cols=402 Identities=16% Similarity=0.250 Sum_probs=299.0
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.++++|+.+++++.|+.|++|+... .+.+.++.+|.+.|++++|+|+ +.+|++|+.||.|+|||+ ..++++
T Consensus 622 ~~s~~~~~l~s~~~d~~i~vw~~~~-------~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~-~~~~~~ 692 (1249)
T 3sfz_A 622 CFSQDGQRIASCGADKTLQVFKAET-------GEKLLDIKAHEDEVLCCAFSSD-DSYIATCSADKKVKIWDS-ATGKLV 692 (1249)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTT-------CCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEET-TTCCEE
T ss_pred EECCCCCEEEEEeCCCeEEEEECCC-------CCEEEEeccCCCCEEEEEEecC-CCEEEEEeCCCeEEEEEC-CCCceE
Confidence 3678999999999999999998763 3568899999999999999996 889999999999999999 556788
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
..+.+|...|.+++|+|++. ..++++|+.||.|++||+ ..+.+...+.+|.+.|.+++|+|++++|+
T Consensus 693 ~~~~~~~~~v~~~~~~~~~~------------~~~l~sg~~d~~v~vwd~-~~~~~~~~~~~h~~~v~~~~~sp~~~~l~ 759 (1249)
T 3sfz_A 693 HTYDEHSEQVNCCHFTNKSN------------HLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDDELLA 759 (1249)
T ss_dssp EEEECCSSCEEEEEECSSSS------------CCEEEEEETTSCEEEEET-TSSSEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred EEEcCCCCcEEEEEEecCCC------------ceEEEEEeCCCeEEEEEC-CCcchhheecCCCCCEEEEEEecCCCEEE
Confidence 99999999999999999652 258999999999999999 66778889999999999999999999999
Q ss_pred EEEcCCeEEEEECCCCceEEEEecCC--------------ceEEEEEecCCCeeeeccCCC-----------ceeeeCCC
Q psy307 453 SAGYDRYLKLWDTESGECISRFTSRK--------------VAYCVKFHPDEDKQHLDIPVD-----------MKYIADPT 507 (1019)
Q Consensus 453 S~s~Dg~I~lWDl~t~~~i~~~~~~~--------------~v~~v~~~p~~~~~~~~~~~~-----------~~~i~~~~ 507 (1019)
+++.||+|++||+.+++....+.... .+.+++|+|++...+...... .......+
T Consensus 760 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~ 839 (1249)
T 3sfz_A 760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH 839 (1249)
T ss_dssp EEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSS
T ss_pred EEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCC
Confidence 99999999999999998877765322 567889999988766533211 12233367
Q ss_pred CCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEe----
Q psy307 508 MHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWD---- 583 (1019)
Q Consensus 508 ~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWD---- 583 (1019)
...+.+++|+|++.++++++.||.|++||+.++ .....+.+|. +.|.+++|+|+|++|++++.||.|++||
T Consensus 840 ~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~---~~~~~~~~h~--~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~ 914 (1249)
T 3sfz_A 840 HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR---LKVADCRGHL--SWVHGVMFSPDGSSFLTASDDQTIRVWETKKV 914 (1249)
T ss_dssp SSCCCEEEECSSTTEEEEECSSSCEEEEETTTT---EEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEEHHHH
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC---ceeeecCCCc--cceEEEEECCCCCEEEEEeCCCeEEEEEcccc
Confidence 788999999999999999999999999999876 3345566665 5577777777777777776666666665
Q ss_pred ---------------------------------------------------------------------------CCCCc
Q psy307 584 ---------------------------------------------------------------------------WKTTK 588 (1019)
Q Consensus 584 ---------------------------------------------------------------------------l~t~~ 588 (1019)
+.+++
T Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~ 994 (1249)
T 3sfz_A 915 CKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR 994 (1249)
T ss_dssp HSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS
T ss_pred ceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc
Confidence 34455
Q ss_pred eeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceee--c-ccccccchhhhhhhcccc
Q psy307 589 LFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQ--F-NQTLTLSSIIQEICSGWS 665 (1019)
Q Consensus 589 ~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~--l-~~~~~LSs~~~~~~~~ws 665 (1019)
.+..+.+|.+.|.+++|+|++ .++++++.||.|++| +....+.... ..+...+.. + .....++...+..+..|+
T Consensus 995 ~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vw-d~~~~~~~~~-~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A 995 VFSSGVGHKKAVRHIQFTADG-KTLISSSEDSVIQVW-NWQTGDYVFL-QAHQETVKDFRLLQDSRLLSWSFDGTVKVWN 1071 (1249)
T ss_dssp CEEECCCCSSCCCCEEECSSS-SCEEEECSSSBEEEE-ETTTTEEECC-BCCSSCEEEEEECSSSEEEEEESSSEEEEEE
T ss_pred eeeecccCCCceEEEEECCCC-CEEEEEcCCCEEEEE-ECCCCceEEE-ecCCCcEEEEEEcCCCcEEEEECCCcEEEEE
Confidence 566677899999999999998 689999999999766 4333322211 111111110 0 011111111122222333
Q ss_pred cC---------------------CCceeEEEeecCCCceEEeccccccc-----cCCceEEEEecCCccHHHHHhhcCCC
Q psy307 666 LS---------------------DSEQYALQFSETNNKNYITEKNRNEI-----KNGSVLRLAFSASKTADDILSKLSDK 719 (1019)
Q Consensus 666 ls---------------------~~e~~al~~sd~~~~~~it~~~~~~I-----~ng~Vl~LafSPd~~a~~Ilt~~~d~ 719 (1019)
+. +...+++..+.++...+|.......+ |.+.|.+++|||++ +.|++++.||
T Consensus 1072 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg--~~lat~~~dg 1149 (1249)
T 3sfz_A 1072 VITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDG--ILLATGDDNG 1149 (1249)
T ss_dssp TTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSS--SEEEEEETTS
T ss_pred CCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCC--CEEEEEeCCC
Confidence 22 12222223333334445554444433 58889999999998 7899999999
Q ss_pred chhhHHH
Q psy307 720 NASLEEK 726 (1019)
Q Consensus 720 ~i~lw~~ 726 (1019)
+|++|+.
T Consensus 1150 ~i~vwd~ 1156 (1249)
T 3sfz_A 1150 EIRIWNV 1156 (1249)
T ss_dssp CCCEEES
T ss_pred EEEEEEC
Confidence 9999984
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=318.68 Aligned_cols=297 Identities=18% Similarity=0.262 Sum_probs=229.1
Q ss_pred ccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC-cEEEEEe-cc-cCccEeEEEEcCCCCceeEEEeec
Q psy307 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE-RRCVRTY-YG-HRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 325 ~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~-~~~~~~~-~g-h~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
.+++.++++|.+.|++++|+|+ +|++|+.||+|+|||+... ..+...+ .+ |...|.+++|+|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~---------- 70 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT---------- 70 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS----------
T ss_pred cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC----------
Confidence 3567899999999999999985 9999999999999999543 2455556 45 99999999999998
Q ss_pred CCCCcEEEEEeCCCcEEEEEccC------CCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCC----ceE
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYK------EHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESG----ECI 471 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~------~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~----~~i 471 (1019)
.+|++|+.|++|+|||+.. ...++..+.+|...|.+++|+|++++|++|+.|++|++||++.. +++
T Consensus 71 ----~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~ 146 (330)
T 2hes_X 71 ----SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECI 146 (330)
T ss_dssp ----SEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEE
T ss_pred ----CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEE
Confidence 6999999999999999843 23567889999999999999999999999999999999999532 222
Q ss_pred EEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEec
Q psy307 472 SRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEG 551 (1019)
Q Consensus 472 ~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~g 551 (1019)
..+ ..|...|.+++|+|++.+|++++.|++|++||...+. ......+.+
T Consensus 147 ~~~------------------------------~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~-~~~~~~~~~ 195 (330)
T 2hes_X 147 SVL------------------------------QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD-WECVAVLNG 195 (330)
T ss_dssp EEE------------------------------CCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECC
T ss_pred EEe------------------------------ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC-eeEEEEccC
Confidence 222 2344667888999999999999999999999987542 234567888
Q ss_pred cccccceEEEEEcCC--CCEEEEEeCCCeEEEEeCCCC--------ceeeeeec-cCCCEEEEEEcCCCCcEEEEEeCCC
Q psy307 552 HMVAGYACSLDFSPD--MSYLISGDADGKCYIWDWKTT--------KLFKKWKA-HDGVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 552 h~~~~~V~~v~fspd--g~~Lasgs~DG~I~IWDl~t~--------~~l~~l~~-h~~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
|. +.|.+++|+|+ +.+|++|+.||+|+|||+.++ .....+.. |...|.+++|++++ +|++++.||
T Consensus 196 h~--~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg 271 (330)
T 2hes_X 196 HE--GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADG 271 (330)
T ss_dssp CS--SCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTS
T ss_pred CC--CcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCC
Confidence 87 77999999998 779999999999999999765 34455554 89999999999764 799999999
Q ss_pred cEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCc-eeEEEeecCCCceEEeccccccccCC-ce
Q psy307 621 ATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSE-QYALQFSETNNKNYITEKNRNEIKNG-SV 698 (1019)
Q Consensus 621 ~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e-~~al~~sd~~~~~~it~~~~~~I~ng-~V 698 (1019)
+|++|. ... ++ ...... ..-|.. .|
T Consensus 272 ~v~iw~-~~~--------------------------------------~~~~~~~~~--------------~~~h~~~~v 298 (330)
T 2hes_X 272 VLAVYE-EVD--------------------------------------GEWKVFAKR--------------ALCHGVYEI 298 (330)
T ss_dssp CEEEEE-EET--------------------------------------TEEEEEEEE--------------SCTTTTSCE
T ss_pred EEEEEE-cCC--------------------------------------CceEEEecc--------------ccccccceE
Confidence 998773 110 00 000000 002444 78
Q ss_pred EEEEecCCccHHHHHhhcCCCchhhHHH
Q psy307 699 LRLAFSASKTADDILSKLSDKNASLEEK 726 (1019)
Q Consensus 699 l~LafSPd~~a~~Ilt~~~d~~i~lw~~ 726 (1019)
.+++|+|....+.|++++.|++|+||+.
T Consensus 299 ~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 299 NVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp EEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred EEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 8999999422267899999999999973
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-33 Score=308.14 Aligned_cols=280 Identities=27% Similarity=0.493 Sum_probs=238.9
Q ss_pred ccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCC
Q psy307 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKS 404 (1019)
Q Consensus 325 ~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~ 404 (1019)
.....++.||.+.|++++|+|+ +.+|++|+.||.|++|++ ..++....+.+|...|.+++|+|++
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~-~~~~~~~~~~~h~~~v~~~~~~~~~------------- 77 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGA-YDGKFEKTISGHKLGISDVAWSSDS------------- 77 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEET-TTCCEEEEECCCSSCEEEEEECTTS-------------
T ss_pred ceeEEEEcccCCcEEEEEECCC-CCEEEEeeCCCeEEEEeC-CCcccchhhccCCCceEEEEEcCCC-------------
Confidence 3567889999999999999995 889999999999999999 4556788899999999999999998
Q ss_pred CcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecC-CceEEE
Q psy307 405 AHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSR-KVAYCV 483 (1019)
Q Consensus 405 ~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~-~~v~~v 483 (1019)
++|++|+.||.|++||+ ..+.++..+.+|...|.+++|+|++++|++++.|++|++||+++++++..+..+ ..+.++
T Consensus 78 -~~l~s~~~d~~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 155 (312)
T 4ery_A 78 -NLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 155 (312)
T ss_dssp -SEEEEEETTSEEEEEET-TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred -CEEEEECCCCEEEEEEC-CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEE
Confidence 69999999999999999 566788899999999999999999999999999999999999999999888765 678999
Q ss_pred EEecCCCeeeeccCCC------------ceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEec
Q psy307 484 KFHPDEDKQHLDIPVD------------MKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEG 551 (1019)
Q Consensus 484 ~~~p~~~~~~~~~~~~------------~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~g 551 (1019)
.|+|++...+...... ...+...+...+..++|+|++++|++++.||.|++||+.++ .....+.+
T Consensus 156 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~ 232 (312)
T 4ery_A 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTG 232 (312)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---EEEEEECS
T ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEEe
Confidence 9999887655422211 11223344566888999999999999999999999999876 34566777
Q ss_pred cccccceEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEe--CCCcEEEE
Q psy307 552 HMVAGYACSLDFS-PDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAG--WDAATAKV 625 (1019)
Q Consensus 552 h~~~~~V~~v~fs-pdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s--~Dg~I~iw 625 (1019)
|..........++ +++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++ .++++++ .|++|++|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~~~~~d~~i~~W 308 (312)
T 4ery_A 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 308 (312)
T ss_dssp SCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSS-SEEEEEECTTTCCEEEE
T ss_pred cCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcC-CceEEEEccCCccEEEe
Confidence 7644333333444 688999999999999999999999999999999999999999998 5888886 69999776
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-34 Score=324.62 Aligned_cols=287 Identities=18% Similarity=0.244 Sum_probs=219.3
Q ss_pred cCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC----------CcEEEEEecccCccEeEEEEcCCCCceeEEEeecC
Q psy307 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK----------ERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFP 402 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~----------~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p 402 (1019)
.|...|.+++|+|+ |.+|++++ |+++++||... ..........|...|.+++|+|++
T Consensus 28 ~~~~~v~~~~fs~d-G~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~----------- 94 (344)
T 4gqb_B 28 CMERQLEAARYRSD-GALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER----------- 94 (344)
T ss_dssp SCCSEEEEEEECTT-SCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-----------
T ss_pred cccCCEEEEEECCC-CCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-----------
Confidence 56778999999996 78888877 77888887310 001111122355678888888875
Q ss_pred CCCcEEEEEeCCCcEEEEEccCCCe---EEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCc
Q psy307 403 KSAHLLLSCSMDCRVKLWEVYKEHR---CVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKV 479 (1019)
Q Consensus 403 ~~~~~L~sgs~Dg~I~IWDl~~~~~---~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~ 479 (1019)
.|++|+.||+|+|||+..... ....+.+|.+.|++++|+|+|++|++|+.|++|++||+++++++..+..+
T Consensus 95 ----~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h-- 168 (344)
T 4gqb_B 95 ----GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH-- 168 (344)
T ss_dssp ----EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC--
T ss_pred ----eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCc--
Confidence 688999999999999965442 23345689999999999999999999999999999999999988877643
Q ss_pred eEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC-CEEEEEecCCeEEEEEccCcccccceeEEeccccccce
Q psy307 480 AYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN-KWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYA 558 (1019)
Q Consensus 480 v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg-~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V 558 (1019)
...|.+++|+|++ .+|++++.|++|++||++++.. ...+..+.....+
T Consensus 169 ----------------------------~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~---~~~~~~~~~~~~~ 217 (344)
T 4gqb_B 169 ----------------------------AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP---ASQIGCSAPGYLP 217 (344)
T ss_dssp ----------------------------SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC---EEECC----CCCE
T ss_pred ----------------------------CCceEEEEecCCCCCceeeeccccccccccccccce---eeeeecceeeccc
Confidence 2445566667766 4789999999999999988743 3444333333568
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeec
Q psy307 559 CSLDFSP-DMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEM 637 (1019)
Q Consensus 559 ~~v~fsp-dg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~ 637 (1019)
.+++|+| ++++|++|+.||+|+|||+++++++.++.+|...|++++|+|++..+|++|+.||+|++| |....
T Consensus 218 ~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vw-d~~~~------ 290 (344)
T 4gqb_B 218 TSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVL-DSSLS------ 290 (344)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEE-CTTCC------
T ss_pred eeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEE-ECCCC------
Confidence 9999999 467899999999999999999999999999999999999999987789999999999776 32211
Q ss_pred cccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcC
Q psy307 638 EKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLS 717 (1019)
Q Consensus 638 ~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~ 717 (1019)
+ .+.+ .-|.+.|.+++|||++. ..+++++.
T Consensus 291 --------------------------------~--~~~~---------------~~H~~~V~~v~~sp~~~-~llas~s~ 320 (344)
T 4gqb_B 291 --------------------------------E--LFRS---------------QAHRDFVRDATWSPLNH-SLLTTVGW 320 (344)
T ss_dssp --------------------------------E--EEEE---------------CCCSSCEEEEEECSSST-TEEEEEET
T ss_pred --------------------------------c--EEEE---------------cCCCCCEEEEEEeCCCC-eEEEEEcC
Confidence 0 0110 13678899999999972 33568899
Q ss_pred CCchhhHHH
Q psy307 718 DKNASLEEK 726 (1019)
Q Consensus 718 d~~i~lw~~ 726 (1019)
|++|++|+.
T Consensus 321 D~~v~~w~v 329 (344)
T 4gqb_B 321 DHQVVHHVV 329 (344)
T ss_dssp TSCEEEEEC
T ss_pred CCeEEEEEC
Confidence 999999974
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-34 Score=325.51 Aligned_cols=309 Identities=15% Similarity=0.204 Sum_probs=225.6
Q ss_pred eeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeC------CCeEEEEecCCCc---EE
Q psy307 301 FLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSM------DCRVKLWEVYKER---RC 371 (1019)
Q Consensus 301 ~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~------Dg~I~IWdl~~~~---~~ 371 (1019)
++.+..+.....|+.++ ....+|.+.|++++|+|| |.+|++|+. |+.|++|+..... ..
T Consensus 19 ~~~~~g~~~~~~w~~p~-----------~~p~~H~~~V~~v~fSpD-G~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~ 86 (357)
T 4g56_B 19 YFQSNGSSKGSAWGRPV-----------TAPACMEVQIGAVRYRRD-GALLLAASSLSSRTWGGSIWVFKDPEGAPNESL 86 (357)
T ss_dssp --------------------------------CCCSEEEEEEECSS-SCEEEEEECSSSSSCCEEEEEESSCC---CGGG
T ss_pred EEecCCCccccccCCCC-----------CCcccccCCEEEEEECCC-CCEEEEEcCCCCccccCeEEEEECCCCCcceeE
Confidence 34444455566776542 123579999999999996 899999997 7889999874322 12
Q ss_pred EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeE---EEEEccccccEeEEEEecCC
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRC---VRTYYGHRQAVRDICFNNTG 448 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~---~~~l~~H~~~V~sl~fspdg 448 (1019)
.....+|...|.+++|+|++ .+++++.||+|+|||+...... .....+|...|.+++|+|++
T Consensus 87 ~~~~~~~~~~V~~~~~s~d~---------------~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 151 (357)
T 4g56_B 87 CTAGVQTEAGVTDVAWVSEK---------------GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG 151 (357)
T ss_dssp CSEEEECSSCEEEEEEETTT---------------EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS
T ss_pred ecccCCCCCCEEEEEEcCCC---------------CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC
Confidence 23445788999999999987 4667899999999999544322 23456899999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC-CEEEEEe
Q psy307 449 TNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN-KWLACQS 527 (1019)
Q Consensus 449 ~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg-~~Lasgs 527 (1019)
++|++|+.|++|++||+++++++..+..+ ...|.+++|+|++ .++++++
T Consensus 152 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~h------------------------------~~~v~~v~~s~~~~~~~~s~~ 201 (357)
T 4g56_B 152 TQAVSGGKDFSVKVWDLSQKAVLKSYNAH------------------------------SSEVNCVAACPGKDTIFLSCG 201 (357)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCC------------------------------SSCEEEEEECTTCSSCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEcCC------------------------------CCCEEEEEEccCCCceeeeec
Confidence 99999999999999999999888777643 2345566666666 4788999
Q ss_pred cCCeEEEEEccCcccccceeEEeccccccceEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEc
Q psy307 528 MDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPD-MSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWH 606 (1019)
Q Consensus 528 ~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspd-g~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~s 606 (1019)
.||.|++||++++... ..+..+.....+.+++|+|+ +.+|++|+.|+.|++||+++++.+..+.+|...|++++|+
T Consensus 202 ~dg~v~~wd~~~~~~~---~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~s 278 (357)
T 4g56_B 202 EDGRILLWDTRKPKPA---TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYS 278 (357)
T ss_dssp TTSCEEECCTTSSSCB---CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEEC
T ss_pred cCCceEEEECCCCcee---eeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEc
Confidence 9999999999876433 33333333467999999997 5689999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEe
Q psy307 607 PHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYIT 686 (1019)
Q Consensus 607 p~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it 686 (1019)
|++..+|++|+.||+|++| |.+..+ . +. .
T Consensus 279 p~~~~~lasgs~D~~i~iw-d~~~~~---------------------------------------~-~~----------~ 307 (357)
T 4g56_B 279 YHSSPFLASISEDCTVAVL-DADFSE---------------------------------------V-FR----------D 307 (357)
T ss_dssp SSSSCCEEEEETTSCEEEE-CTTSCE---------------------------------------E-EE----------E
T ss_pred CCCCCEEEEEeCCCEEEEE-ECCCCc---------------------------------------E-eE----------E
Confidence 9987789999999999776 332110 0 00 0
Q ss_pred ccccccccCCceEEEEecC-CccHHHHHhhcCCCchhhHHHH
Q psy307 687 EKNRNEIKNGSVLRLAFSA-SKTADDILSKLSDKNASLEEKT 727 (1019)
Q Consensus 687 ~~~~~~I~ng~Vl~LafSP-d~~a~~Ilt~~~d~~i~lw~~~ 727 (1019)
.-|.+.|++|+||| ++ ..|++++.|++|++|+..
T Consensus 308 -----~~H~~~V~~vafsP~d~--~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 308 -----LSHRDFVTGVAWSPLDH--SKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp -----CCCSSCEEEEEECSSST--TEEEEEETTSCEEEEECC
T ss_pred -----CCCCCCEEEEEEeCCCC--CEEEEEcCCCeEEEEECC
Confidence 02677899999999 55 678999999999999853
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=324.96 Aligned_cols=265 Identities=20% Similarity=0.370 Sum_probs=223.9
Q ss_pred ccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEE-------
Q psy307 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISA------- 397 (1019)
Q Consensus 325 ~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~------- 397 (1019)
..+.+++.||.+.|++++|+|+ +.+|+||+.||+|+|||+ ..+.....+.+|...|.+++|+|+|..++++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~-~~~l~s~s~D~~v~iWd~-~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~ 133 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPE-KNWIVSASQDGRLIVWNA-LTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACS 133 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTT-SSCEEEEETTSEEEEEET-TTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCE
T ss_pred eEEeecccccccEEEEEEEcCC-CCEEEEEeCCCeEEEEEC-CCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEE
Confidence 3567899999999999999996 789999999999999999 5567788999999999999999998766543
Q ss_pred -----------------------------EeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEE-----ccccccEeEEE
Q psy307 398 -----------------------------IRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY-----YGHRQAVRDIC 443 (1019)
Q Consensus 398 -----------------------------i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l-----~~H~~~V~sl~ 443 (1019)
+.|+|..+..|++|+.|++|++||+ ..+..+..+ .+|...|.+++
T Consensus 134 iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~-~~~~~~~~~~~~~~~~h~~~v~~~~ 212 (380)
T 3iz6_a 134 IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDV-TTGQRISIFGSEFPSGHTADVLSLS 212 (380)
T ss_dssp EEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECT-TTCCEEEEECCCSSSSCCSCEEEEE
T ss_pred EEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEc-CCCcEEEEeecccCCCCccCeEEEE
Confidence 3466666778999999999999999 455566665 68999999999
Q ss_pred Eec-CCCEEEEEEcCCeEEEEECCC-CceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCC
Q psy307 444 FNN-TGTNFISAGYDRYLKLWDTES-GECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK 521 (1019)
Q Consensus 444 fsp-dg~~l~S~s~Dg~I~lWDl~t-~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~ 521 (1019)
|++ ++++|++|+.|++|++||++. +.++..+. .|...|.+++|+|+++
T Consensus 213 ~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~------------------------------~h~~~v~~v~~~p~~~ 262 (380)
T 3iz6_a 213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYH------------------------------GHEGDINSVKFFPDGQ 262 (380)
T ss_dssp ECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC------------------------------CCSSCCCEEEECTTSS
T ss_pred eecCCCCEEEEEECCCeEEEEECCCCCcceEEEC------------------------------CcCCCeEEEEEecCCC
Confidence 987 788999999999999999974 34433332 3456788999999999
Q ss_pred EEEEEecCCeEEEEEccCcccccceeEEecccc-----ccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee---
Q psy307 522 WLACQSMDNKILIFSALNRFKLNRKKTFEGHMV-----AGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKW--- 593 (1019)
Q Consensus 522 ~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~-----~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l--- 593 (1019)
+|++|+.||+|++||++++.. ...+..+.. ...+.+++|+|+|++|++|+.||.|++||+.+++.+..+
T Consensus 263 ~l~s~s~D~~i~lwd~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 339 (380)
T 3iz6_a 263 RFGTGSDDGTCRLFDMRTGHQ---LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL 339 (380)
T ss_dssp EEEEECSSSCEEEEETTTTEE---EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS
T ss_pred eEEEEcCCCeEEEEECCCCcE---EEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecc
Confidence 999999999999999998733 344443321 134889999999999999999999999999999888777
Q ss_pred -eccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 594 -KAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 594 -~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
.+|.+.|.+++|+|++ .+|+|||.||+|++|.
T Consensus 340 ~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 340 QNSHEGRISCLGLSSDG-SALCTGSWDKNLKIWA 372 (380)
T ss_dssp CSSCCCCCCEEEECSSS-SEEEEECTTSCEEEEE
T ss_pred cCCCCCceEEEEECCCC-CEEEEeeCCCCEEEEe
Confidence 6899999999999998 6999999999998873
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=312.35 Aligned_cols=277 Identities=22% Similarity=0.401 Sum_probs=224.0
Q ss_pred cceeeeccCCCCeEEEEE-----cCCCCcEEEEeeCCCeEEEEecCCC------cEEEEEecccCccEeEEEEcCCCCce
Q psy307 326 TQVHTWEGHTKGISAIRW-----FPKSAHLLLSCSMDCRVKLWEVYKE------RRCVRTYYGHRQAVRDICFNNTGTNF 394 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~f-----spd~g~lLaSgs~Dg~I~IWdl~~~------~~~~~~~~gh~~~V~~i~fspdg~~~ 394 (1019)
.+..+++||.+.|++++| ++.++.+|+||+.|++|+|||+... +.+...+.+|...|.+++|+|++
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~--- 88 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN--- 88 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST---
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC---
Confidence 467789999999999999 7745889999999999999998542 35677899999999999999998
Q ss_pred eEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEE
Q psy307 395 ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRF 474 (1019)
Q Consensus 395 vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~ 474 (1019)
.+|++|+.|++|++||+ ..+.++..+.+|...|.+++|+|++++|++++.|++|++||+... +....
T Consensus 89 -----------~~l~s~s~D~~v~lwd~-~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~ 155 (343)
T 2xzm_R 89 -----------CFAISSSWDKTLRLWDL-RTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSS 155 (343)
T ss_dssp -----------TEEEEEETTSEEEEEET-TSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEEC
T ss_pred -----------CEEEEEcCCCcEEEEEC-CCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeee
Confidence 68999999999999999 566788889999999999999999999999999999999999843 33333
Q ss_pred e----cCCceEEEEEecCCC----------eeee----------ccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC
Q psy307 475 T----SRKVAYCVKFHPDED----------KQHL----------DIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN 530 (1019)
Q Consensus 475 ~----~~~~v~~v~~~p~~~----------~~~~----------~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg 530 (1019)
. +...+.+++|+|++. ..+. +...........|...|.+++|+|+|++|++|+.||
T Consensus 156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg 235 (343)
T 2xzm_R 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDK 235 (343)
T ss_dssp CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTC
T ss_pred ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCC
Confidence 2 345688999999762 1211 212222233456778899999999999999999999
Q ss_pred eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee--eee-----------ccC
Q psy307 531 KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFK--KWK-----------AHD 597 (1019)
Q Consensus 531 ~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~--~l~-----------~h~ 597 (1019)
.|++||+..... ....+. +. ..|.+++|+|++.++++| .|+.|++||+.+++... .+. +|.
T Consensus 236 ~v~iwd~~~~~~--~~~~~~-~~--~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (343)
T 2xzm_R 236 KLLIWDILNLTY--PQREFD-AG--STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN 309 (343)
T ss_dssp EEEEEESSCCSS--CSEEEE-CS--SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSC
T ss_pred eEEEEECCCCcc--cceeec-CC--CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCC
Confidence 999999954322 223332 22 459999999999988755 57789999998876543 443 688
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 598 GVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 598 ~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
..|.+++|+|++ .+|++|+.||+|++|
T Consensus 310 ~~v~~~~~sp~g-~~l~sg~~Dg~v~~w 336 (343)
T 2xzm_R 310 PQCTSLAWNALG-KKLFAGFTDGVIRTF 336 (343)
T ss_dssp CCEEEEEECSSS-CCEEEEETTSEEEEE
T ss_pred CceEEEEECCCC-CeEEEecCCceEEEE
Confidence 899999999998 589999999999776
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=308.96 Aligned_cols=271 Identities=20% Similarity=0.337 Sum_probs=230.7
Q ss_pred CCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec
Q psy307 297 QGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY 376 (1019)
Q Consensus 297 ~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~ 376 (1019)
.++.+++++.|+.|++|+...... ....++.++++|...|++++|+|+ +.+|++|+.|++|+|||+ ..++++..+.
T Consensus 29 ~~~~l~s~s~D~~v~~W~~~~~~~--~~~~~~~~~~~h~~~v~~~~~s~d-g~~l~s~s~D~~v~~wd~-~~~~~~~~~~ 104 (319)
T 3frx_A 29 QPNLLLSASRDKTLISWKLTGDDQ--KFGVPVRSFKGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDV-ATGETYQRFV 104 (319)
T ss_dssp CTTEEEEEETTSEEEEEEEEEETT--EEEEEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEET-TTTEEEEEEE
T ss_pred CccEEEEecCCccEEEecCCCCCc--cccccceEEeCCcccEEEEEECCC-CCEEEEEeCCCEEEEEEC-CCCCeeEEEc
Confidence 358899999999999998753221 123467889999999999999996 889999999999999999 5667889999
Q ss_pred ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecC------CCE
Q psy307 377 GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT------GTN 450 (1019)
Q Consensus 377 gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspd------g~~ 450 (1019)
+|...|.+++|+|++ .+|++|+.|++|++||+. +.++..+.+|...|.++.|+|. +..
T Consensus 105 ~h~~~v~~~~~~~~~--------------~~l~s~s~D~~i~vwd~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 168 (319)
T 3frx_A 105 GHKSDVMSVDIDKKA--------------SMIISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVT 168 (319)
T ss_dssp CCSSCEEEEEECTTS--------------CEEEEEETTSCEEEEETT--SCEEEEECCCSSCEEEEEECCC------CCE
T ss_pred cCCCcEEEEEEcCCC--------------CEEEEEeCCCeEEEEECC--CCeEEEEeccCCcEEEEEEccCCCCCCCccE
Confidence 999999999999998 699999999999999983 5678889999999999999985 448
Q ss_pred EEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC
Q psy307 451 FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN 530 (1019)
Q Consensus 451 l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg 530 (1019)
|++++.|++|++||++++++...+.. |...|.+++++|+|++|++++.||
T Consensus 169 l~s~~~d~~i~~wd~~~~~~~~~~~~------------------------------h~~~v~~~~~sp~g~~l~s~~~dg 218 (319)
T 3frx_A 169 IISAGNDKMVKAWNLNQFQIEADFIG------------------------------HNSNINTLTASPDGTLIASAGKDG 218 (319)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECC------------------------------CCSCEEEEEECTTSSEEEEEETTC
T ss_pred EEEEeCCCEEEEEECCcchhheeecC------------------------------CCCcEEEEEEcCCCCEEEEEeCCC
Confidence 99999999999999998876655543 335677888899999999999999
Q ss_pred eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee--------ccCCCEEE
Q psy307 531 KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK--------AHDGVCIS 602 (1019)
Q Consensus 531 ~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~--------~h~~~V~s 602 (1019)
.|++||+.++. ....+..+ ..|.+++|+|+|.+|++++.+ .+++|++..+..+..+. .|...+.+
T Consensus 219 ~i~iwd~~~~~---~~~~~~~~---~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 291 (319)
T 3frx_A 219 EIMLWNLAAKK---AMYTLSAQ---DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVS 291 (319)
T ss_dssp EEEEEETTTTE---EEEEEECC---SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEE
T ss_pred eEEEEECCCCc---EEEEecCC---CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeE
Confidence 99999998763 34555554 569999999999999988765 49999999887776654 35667999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEE
Q psy307 603 TLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 603 l~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
++|+|+| .+|++|+.||.|++|
T Consensus 292 ~~~spdg-~~l~sg~~Dg~i~vW 313 (319)
T 3frx_A 292 LAWSADG-QTLFAGYTDNVIRVW 313 (319)
T ss_dssp EEECTTS-SEEEEEETTSCEEEE
T ss_pred EEECCCC-CEEEEeecCceEEEE
Confidence 9999998 699999999999776
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=330.93 Aligned_cols=399 Identities=15% Similarity=0.146 Sum_probs=296.2
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCC-eEEEEEcC--CCCcEEEEeeCCCeEEEEecCC--
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKG-ISAIRWFP--KSAHLLLSCSMDCRVKLWEVYK-- 367 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~-V~~i~fsp--d~g~lLaSgs~Dg~I~IWdl~~-- 367 (1019)
.++++|+.++.+. ++.+.+|+..... .+.+.+..+.+|.+. |++++|+| + +.+|++|+.||.|+|||+..
T Consensus 25 ~~spdg~~l~~~~-~~~v~v~~~~~~~---~~~~~~~~~~~h~~~~v~~~~~sp~~~-~~~l~s~~~dg~v~vw~~~~~~ 99 (615)
T 1pgu_A 25 SYDPTTNAIAYPC-GKSAFVRCLDDGD---SKVPPVVQFTGHGSSVVTTVKFSPIKG-SQYLCSGDESGKVIVWGWTFDK 99 (615)
T ss_dssp EEETTTTEEEEEE-TTEEEEEECCSSC---CSSCSEEEECTTTTSCEEEEEECSSTT-CCEEEEEETTSEEEEEEEEEEG
T ss_pred EECCCCCEEEEec-CCeEEEEECCCCC---CccccceEEecCCCceEEEEEECcCCC-CCEEEEecCCCEEEEEeCCCCc
Confidence 4678899999887 8899999876321 122568899999999 99999999 7 78999999999999999943
Q ss_pred -----CcEEEEEecccCccEeEEEEcCCCCcee-------------------------------EEEeecCCCCcEEEEE
Q psy307 368 -----ERRCVRTYYGHRQAVRDICFNNTGTNFI-------------------------------SAIRWFPKSAHLLLSC 411 (1019)
Q Consensus 368 -----~~~~~~~~~gh~~~V~~i~fspdg~~~v-------------------------------s~i~~~p~~~~~L~sg 411 (1019)
...++..+.+|...|.+++|+|++..++ .++.|+|++..+++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 179 (615)
T 1pgu_A 100 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV 179 (615)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred ccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEE
Confidence 3467788899999999999999987654 4567888887799999
Q ss_pred eCCCcEEEEEccCCCeEEEEEccccc---cEeEEEEecC-CCEEEEEEcCCeEEEEECCCCceEEEE-----ecCCceEE
Q psy307 412 SMDCRVKLWEVYKEHRCVRTYYGHRQ---AVRDICFNNT-GTNFISAGYDRYLKLWDTESGECISRF-----TSRKVAYC 482 (1019)
Q Consensus 412 s~Dg~I~IWDl~~~~~~~~~l~~H~~---~V~sl~fspd-g~~l~S~s~Dg~I~lWDl~t~~~i~~~-----~~~~~v~~ 482 (1019)
+.|+.|++||+ ...+++..+.+|.. .|.+++|+|+ +++|++++.||.|++||+++++.+..+ .+...+.+
T Consensus 180 ~~d~~v~vwd~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~ 258 (615)
T 1pgu_A 180 GDDGSVVFYQG-PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 258 (615)
T ss_dssp ETTTEEEEEET-TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred eCCCcEEEEeC-CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEE
Confidence 99999999998 67788899999999 9999999999 999999999999999999999999998 55678999
Q ss_pred EEEecCCCeeeeccCCCceeeeCC-----------C----CCcccEEEEcCCCCEEEEEecCCeEEEEEccCccccccee
Q psy307 483 VKFHPDEDKQHLDIPVDMKYIADP-----------T----MHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKK 547 (1019)
Q Consensus 483 v~~~p~~~~~~~~~~~~~~~i~~~-----------~----~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~ 547 (1019)
+.|+ ++..++.........+++. + ...+.++.++ ++.++++++.||.|++||+.++.. ..
T Consensus 259 ~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~---~~ 333 (615)
T 1pgu_A 259 LSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEV---LK 333 (615)
T ss_dssp EEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEE---EE
T ss_pred EEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcE---EE
Confidence 9999 7665554322222222111 1 2345566664 899999999999999999876422 22
Q ss_pred EEeccc-------------------------------cccc---------------------------------------
Q psy307 548 TFEGHM-------------------------------VAGY--------------------------------------- 557 (1019)
Q Consensus 548 ~l~gh~-------------------------------~~~~--------------------------------------- 557 (1019)
.+.+|. ....
T Consensus 334 ~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~ 413 (615)
T 1pgu_A 334 TISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVAS 413 (615)
T ss_dssp EECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEE
T ss_pred EEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEE
Confidence 333322 0012
Q ss_pred -----------------------------------eEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCcee-eeeeccCCCE
Q psy307 558 -----------------------------------ACSLDFSPDMSYLISGDA-DGKCYIWDWKTTKLF-KKWKAHDGVC 600 (1019)
Q Consensus 558 -----------------------------------V~~v~fspdg~~Lasgs~-DG~I~IWDl~t~~~l-~~l~~h~~~V 600 (1019)
+.+++|+ +++|++|+. ||.|++||+.+++.. ..+.+|...|
T Consensus 414 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v 491 (615)
T 1pgu_A 414 ANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP 491 (615)
T ss_dssp ECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCE
T ss_pred EcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCce
Confidence 2233333 556666777 778888888776655 6677899999
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccc-cCCceeecccccccchhhhhhhcccccCC----------C
Q psy307 601 ISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEK-QVPQLYQFNQTLTLSSIIQEICSGWSLSD----------S 669 (1019)
Q Consensus 601 ~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~-~v~ql~~l~~~~~LSs~~~~~~~~wsls~----------~ 669 (1019)
.+++|+|++ .+|++++.||.|++| +....+......+ +...+.. ..+++ .
T Consensus 492 ~~~~~s~~g-~~l~~~~~dg~i~iw-~~~~~~~~~~~~~~h~~~v~~-----------------~~~sp~~~~~~~~~~~ 552 (615)
T 1pgu_A 492 SYISISPSE-TYIAAGDVMGKILLY-DLQSREVKTSRWAFRTSKINA-----------------ISWKPAEKGANEEEIE 552 (615)
T ss_dssp EEEEECTTS-SEEEEEETTSCEEEE-ETTTTEEEECCSCCCSSCEEE-----------------EEECCCC------CCS
T ss_pred EEEEECCCC-CEEEEcCCCCeEEEe-eCCCCcceeEeecCCCCceeE-----------------EEEcCccccccccccC
Confidence 999999998 699999999999665 5544444333322 2211111 11222 3
Q ss_pred ceeEEEeecCCCceEEecccc-ccc-----cCCceEEEEecCCccHHHHHhhcCCCchhhHHH
Q psy307 670 EQYALQFSETNNKNYITEKNR-NEI-----KNGSVLRLAFSASKTADDILSKLSDKNASLEEK 726 (1019)
Q Consensus 670 e~~al~~sd~~~~~~it~~~~-~~I-----~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~~ 726 (1019)
..+++..+.++...+|..... ..+ |.+.|.+++|+|++ + |+++..|+.|++|+.
T Consensus 553 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~--~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 553 EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS--T-LVSSGADACIKRWNV 612 (615)
T ss_dssp CCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT--E-EEEEETTSCEEEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCC--C-eEEecCCceEEEEee
Confidence 334444444555556655544 222 68899999999999 5 999999999999974
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=314.97 Aligned_cols=273 Identities=18% Similarity=0.315 Sum_probs=225.9
Q ss_pred cCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCc------------------cEeEEEEcCCCCce
Q psy307 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQ------------------AVRDICFNNTGTNF 394 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~------------------~V~~i~fspdg~~~ 394 (1019)
+|.+.|++++|+|+ +.+|++|+ |+.++||++ ..+..+..+.+|.. .|.+++|+|+|
T Consensus 62 ~h~~~V~~v~fspd-g~~la~g~-~~~v~i~~~-~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg--- 135 (393)
T 1erj_A 62 DHTSVVCCVKFSND-GEYLATGC-NKTTQVYRV-SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG--- 135 (393)
T ss_dssp ECSSCCCEEEECTT-SSEEEEEC-BSCEEEEET-TTCCEEEEECC-----------------CCCCBEEEEEECTTS---
T ss_pred CCCCEEEEEEECCC-CCEEEEEc-CCcEEEEEe-cCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC---
Confidence 69999999999996 78899876 789999999 44556666665542 36777777776
Q ss_pred eEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEE
Q psy307 395 ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRF 474 (1019)
Q Consensus 395 vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~ 474 (1019)
++|++|+.|+.|++||+ ..++.+..+.+|...|.+++|+|++++|++++.|++|++||++++++...+
T Consensus 136 -----------~~l~s~~~d~~i~iwd~-~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 203 (393)
T 1erj_A 136 -----------KFLATGAEDRLIRIWDI-ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203 (393)
T ss_dssp -----------SEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred -----------CEEEEEcCCCeEEEEEC-CCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence 68999999999999999 667888899999999999999999999999999999999999999999999
Q ss_pred ecCCceEEEEEec-CCCeeeeccCCCceeee------------------CCCCCcccEEEEcCCCCEEEEEecCCeEEEE
Q psy307 475 TSRKVAYCVKFHP-DEDKQHLDIPVDMKYIA------------------DPTMHSMPAVTSSPNNKWLACQSMDNKILIF 535 (1019)
Q Consensus 475 ~~~~~v~~v~~~p-~~~~~~~~~~~~~~~i~------------------~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iw 535 (1019)
.....+.+++++| ++..++.........++ ..|...|.+++|+|+|++|++|+.||.|++|
T Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~w 283 (393)
T 1erj_A 204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283 (393)
T ss_dssp ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 8888999999999 55544432211111111 3466789999999999999999999999999
Q ss_pred EccCccc---------ccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEc
Q psy307 536 SALNRFK---------LNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWH 606 (1019)
Q Consensus 536 d~~~~~~---------~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~s 606 (1019)
|+.+... ......+.+|. ..|.+++|+|++.+|++|+.||.|++||+.+++++..+.+|.+.|.+++|+
T Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~ 361 (393)
T 1erj_A 284 NLQNANNKSDSKTPNSGTCEVTYIGHK--DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 361 (393)
T ss_dssp EC---------------CEEEEEECCS--SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred ECCCCCCcccccCCCCCcceEEEeccc--CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEec
Confidence 9975421 12345677787 679999999999999999999999999999999999999999999999998
Q ss_pred C------CCCcEEEEEeCCCcEEEEe
Q psy307 607 P------HEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 607 p------~~~~~l~s~s~Dg~I~iww 626 (1019)
+ ++ .+|+|||.||+|++|.
T Consensus 362 ~~~~~~p~~-~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 362 NGSSLGPEY-NVFATGSGDCKARIWK 386 (393)
T ss_dssp SSCTTCTTC-EEEEEEETTSEEEEEE
T ss_pred CCcCcCCCC-CEEEEECCCCcEEECc
Confidence 7 34 6899999999998873
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=305.30 Aligned_cols=301 Identities=22% Similarity=0.348 Sum_probs=241.0
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC----cEEEEEecccCccEeEEEEcCCCCceeEEEeec
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE----RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~----~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
++..+|+||++.|++|+|+|+++++|+|||.||+|+|||+... ..+.+.+.+|...|.+++|+|++
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg---------- 98 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG---------- 98 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS----------
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC----------
Confidence 4567899999999999999987899999999999999998543 34678899999999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceE
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY 481 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~ 481 (1019)
.+|++|+.|+.|++|+. ...........+...+..+.+++++..|++++.|+.+++||+..........
T Consensus 99 ----~~l~s~~~d~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~------ 167 (340)
T 4aow_A 99 ----QFALSGSWDGTLRLWDL-TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD------ 167 (340)
T ss_dssp ----SEEEEEETTSEEEEEET-TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS------
T ss_pred ----CEEEEEcccccceEEee-cccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe------
Confidence 69999999999999999 6667777788888999999999999999999999999999987654432211
Q ss_pred EEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC--CCEEEEEecCCeEEEEEccCcccccceeEEeccccccceE
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN--NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYAC 559 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd--g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~ 559 (1019)
..+...+..++++++ ..++++++.|+.|++||+.+. .....+.+|. +.|.
T Consensus 168 -----------------------~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~---~~~~~~~~h~--~~v~ 219 (340)
T 4aow_A 168 -----------------------ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC---KLKTNHIGHT--GYLN 219 (340)
T ss_dssp -----------------------SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT---EEEEEECCCS--SCEE
T ss_pred -----------------------ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC---ceeeEecCCC--CcEE
Confidence 122344555556554 457889999999999999876 4457778887 7799
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccc
Q psy307 560 SLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEK 639 (1019)
Q Consensus 560 ~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~ 639 (1019)
+++|+|+|++|++|+.||.|++||+.+++.+..+..+ ..|.+++|+|++ .+++++.|+.|++| +.+........
T Consensus 220 ~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~--~~~~~~~d~~i~iw-d~~~~~~~~~~-- 293 (340)
T 4aow_A 220 TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNR--YWLCAATGPSIKIW-DLEGKIIVDEL-- 293 (340)
T ss_dssp EEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSS--SEEEEEETTEEEEE-ETTTTEEEEEE--
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCC--ceeeccCCCEEEEE-ECCCCeEEEec--
Confidence 9999999999999999999999999999999988765 479999999986 57788889999776 33221111000
Q ss_pred cCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCC
Q psy307 640 QVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDK 719 (1019)
Q Consensus 640 ~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~ 719 (1019)
... . . ......|.+.|++++|+|++ +.|++++.||
T Consensus 294 -------------------------------------~~~--~-~---~~~~~~h~~~v~~l~~s~dg--~~l~sgs~Dg 328 (340)
T 4aow_A 294 -------------------------------------KQE--V-I---STSSKAEPPQCTSLAWSADG--QTLFAGYTDN 328 (340)
T ss_dssp -------------------------------------CCC-------------CCCCCEEEEEECTTS--SEEEEEETTS
T ss_pred -------------------------------------ccc--c-e---eeeccCCCCCEEEEEECCCC--CEEEEEeCCC
Confidence 000 0 0 00011467889999999998 7899999999
Q ss_pred chhhHHH
Q psy307 720 NASLEEK 726 (1019)
Q Consensus 720 ~i~lw~~ 726 (1019)
+|+||++
T Consensus 329 ~v~iW~~ 335 (340)
T 4aow_A 329 LVRVWQV 335 (340)
T ss_dssp CEEEEEE
T ss_pred EEEEEeC
Confidence 9999974
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-32 Score=306.76 Aligned_cols=273 Identities=20% Similarity=0.305 Sum_probs=213.9
Q ss_pred eeeeCCCCCceeeecCCCCCCccCCccceeee-cc-CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC------CcEE
Q psy307 300 SFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTW-EG-HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK------ERRC 371 (1019)
Q Consensus 300 ~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l-~g-H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~------~~~~ 371 (1019)
.+++++.|+.|++|+..... .+.+.++ .+ |.+.|++++|+|+ +.+|++|+.|++|+|||+.. ...+
T Consensus 26 ~las~~~D~~i~lw~~~~~~-----~~~~~~~~~~~h~~~v~~v~~sp~-~~~las~s~D~~v~iw~~~~~~~~~~~~~~ 99 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDD-----FTLIDVLDETAHKKAIRSVAWRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDL 99 (330)
T ss_dssp EEEEEESSSCEEEEECSSSC-----CEEEEEECTTCCCSCEEEEEECTT-SSEEEEEETTSCEEEEEC-------CCCEE
T ss_pred EEEEEcCCCEEEEEEecCCC-----eEEEEEEecCCccCCEEEEEECCC-CCEEEEEeCCCcEEEEEcccCcCcccccee
Confidence 89999999999999876321 2345555 45 9999999999996 78999999999999999842 2356
Q ss_pred EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCC---CeEEEEEccccccEeEEEEecCC
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE---HRCVRTYYGHRQAVRDICFNNTG 448 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~---~~~~~~l~~H~~~V~sl~fspdg 448 (1019)
+..+.+|...|.+++|+|++ .+|++|+.|++|++||+... ..++..+.+|...|.+++|+|++
T Consensus 100 ~~~~~~h~~~V~~v~~sp~g--------------~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 165 (330)
T 2hes_X 100 LAIIEGHENEVKGVAWSNDG--------------YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE 165 (330)
T ss_dssp EEEEC----CEEEEEECTTS--------------CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSS
T ss_pred EEEEcCCCCcEEEEEECCCC--------------CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCC
Confidence 78899999999999999998 69999999999999999533 36788899999999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCC--ceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC--CCEEE
Q psy307 449 TNFISAGYDRYLKLWDTESG--ECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN--NKWLA 524 (1019)
Q Consensus 449 ~~l~S~s~Dg~I~lWDl~t~--~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd--g~~La 524 (1019)
.+|++++.|++|++||..++ +++..+.. |...|.+++|+|+ +.+|+
T Consensus 166 ~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~------------------------------h~~~v~~~~~~~~~~~~~l~ 215 (330)
T 2hes_X 166 ALLASSSYDDTVRIWKDYDDDWECVAVLNG------------------------------HEGTVWSSDFDKTEGVFRLC 215 (330)
T ss_dssp SEEEEEETTSCEEEEEEETTEEEEEEEECC------------------------------CSSCEEEEEECCSSSSCEEE
T ss_pred CEEEEEcCCCeEEEEECCCCCeeEEEEccC------------------------------CCCcEEEEEecCCCCeeEEE
Confidence 99999999999999998765 34444432 3345666777777 67899
Q ss_pred EEecCCeEEEEEccCcccc-----cceeEEec-cccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeee-eec
Q psy307 525 CQSMDNKILIFSALNRFKL-----NRKKTFEG-HMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK--LFKK-WKA 595 (1019)
Q Consensus 525 sgs~Dg~I~iwd~~~~~~~-----~~~~~l~g-h~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~--~l~~-l~~ 595 (1019)
+++.|++|++||+...... .....+.+ |. ..|.+++|++++ +|++|+.||+|+|||..+++ .+.. +.+
T Consensus 216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~ 292 (330)
T 2hes_X 216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK--RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALC 292 (330)
T ss_dssp EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS--SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCT
T ss_pred EEeCCCeEEEEEecCCCccccceeEEeeecccccc--cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccc
Confidence 9999999999998754211 12233333 54 679999999766 79999999999999998773 3333 467
Q ss_pred cCC-CEEEEEEcCC-CCcEEEEEeCCCcEEEE
Q psy307 596 HDG-VCISTLWHPH-EPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 596 h~~-~V~sl~~sp~-~~~~l~s~s~Dg~I~iw 625 (1019)
|.. .|.+++|+|. ++.+|++||.||+|++|
T Consensus 293 h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W 324 (330)
T 2hes_X 293 HGVYEINVVKWLELNGKTILATGGDDGIVNFW 324 (330)
T ss_dssp TTTSCEEEEEEC-----CCEEEEETTSEEEEE
T ss_pred cccceEEEEEEecCCCceEEEEecCCCcEEEE
Confidence 887 8999999994 33689999999999776
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-33 Score=320.98 Aligned_cols=292 Identities=16% Similarity=0.240 Sum_probs=242.4
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.++++|+.++++..|+.+++|+.... +....+.+| ..+....|+|+ +.+|++|+.||.|++||+ ..+.+.
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~-------~~~~~~~~~-~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~-~~~~~~ 132 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIR-------DGSKMLKRA-DYTAVDTAKLQ-MRRFILGTTEGDIKVLDS-NFNLQR 132 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSE-------ETTTTSCSC-CEEEEEEECSS-SCEEEEEETTSCEEEECT-TSCEEE
T ss_pred eeeecCCeEEEEEcCCcEEEEEeccc-------ceeeEEecC-CceEEEEEecC-CCEEEEEECCCCEEEEeC-CCccee
Confidence 46778999999999999999987632 233445566 34445567774 889999999999999999 566778
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
..+.+|...|.+++|+|++ .+|++|+.||.|++||+ ..++.+..+.+|...|.+++|+|++++|+
T Consensus 133 ~~~~~h~~~v~~~~~~~~~--------------~~l~s~s~d~~i~iwd~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 197 (420)
T 3vl1_A 133 EIDQAHVSEITKLKFFPSG--------------EALISSSQDMQLKIWSV-KDGSNPRTLIGHRATVTDIAIIDRGRNVL 197 (420)
T ss_dssp EETTSSSSCEEEEEECTTS--------------SEEEEEETTSEEEEEET-TTCCCCEEEECCSSCEEEEEEETTTTEEE
T ss_pred eecccccCccEEEEECCCC--------------CEEEEEeCCCeEEEEeC-CCCcCceEEcCCCCcEEEEEEcCCCCEEE
Confidence 8888999999999999998 69999999999999999 55667788899999999999999999999
Q ss_pred EEEcCCeEEEEECCCCceEEEEec----CCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec
Q psy307 453 SAGYDRYLKLWDTESGECISRFTS----RKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM 528 (1019)
Q Consensus 453 S~s~Dg~I~lWDl~t~~~i~~~~~----~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~ 528 (1019)
+++.|++|++||+++++++..+.. ...+.++.+.|..... +...+...+.+++|+|++++|++|+.
T Consensus 198 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------~~~~~~~~v~~~~~s~~~~~l~~~~~ 267 (420)
T 3vl1_A 198 SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ----------LHEISTSKKNNLEFGTYGKYVIAGHV 267 (420)
T ss_dssp EEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS----------CGGGCCCCCCTTCSSCTTEEEEEEET
T ss_pred EEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce----------eeecccCcccceEEcCCCCEEEEEcC
Confidence 999999999999999999998864 4568888888875432 22334567888999999999999999
Q ss_pred CCeEEEEEccCcccccceeEE-eccccccceEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCce-eeeeec-cCCCEEEEE
Q psy307 529 DNKILIFSALNRFKLNRKKTF-EGHMVAGYACSLDFSPDMS-YLISGDADGKCYIWDWKTTKL-FKKWKA-HDGVCISTL 604 (1019)
Q Consensus 529 Dg~I~iwd~~~~~~~~~~~~l-~gh~~~~~V~~v~fspdg~-~Lasgs~DG~I~IWDl~t~~~-l~~l~~-h~~~V~sl~ 604 (1019)
||.|++||+.++... ..+ .+|. ..|.+++|+|++. +|++|+.||.|++||+++++. +..+.+ |...|.++.
T Consensus 268 dg~i~i~d~~~~~~~---~~~~~~~~--~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 342 (420)
T 3vl1_A 268 SGVITVHNVFSKEQT---IQLPSKFT--CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY 342 (420)
T ss_dssp TSCEEEEETTTCCEE---EEECCTTS--SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEE
T ss_pred CCeEEEEECCCCcee---EEcccccC--CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEE
Confidence 999999999876432 333 3454 6799999999999 999999999999999998754 777877 666788885
Q ss_pred EcCCCCcEEEEEeCCCcEEEEe
Q psy307 605 WHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 605 ~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
|. ++ .++++++.||+|++|.
T Consensus 343 ~~-~~-~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 343 FA-AG-ALFVSSGFDTSIKLDI 362 (420)
T ss_dssp EE-TT-EEEEEETTTEEEEEEE
T ss_pred eC-CC-CEEEEecCCccEEEEe
Confidence 54 55 6999999999998773
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=323.99 Aligned_cols=366 Identities=14% Similarity=0.223 Sum_probs=268.4
Q ss_pred CCCCCCCC-eeeeC----------CCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeE
Q psy307 292 DPTDYQGR-SFLHP----------PHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRV 360 (1019)
Q Consensus 292 ~~~~~~gr-~~~~~----------~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I 360 (1019)
-.++++|+ .++++ +.|+.|++|+....... +.+..+ +|...|++++|+|+ +.+|++|+.||.|
T Consensus 18 ~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~----~~~~~~-~~~~~v~~~~~s~~-~~~l~~~~~dg~v 91 (416)
T 2pm9_A 18 FAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE----KPIASL-QVDSKFNDLDWSHN-NKIIAGALDNGSL 91 (416)
T ss_dssp CCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC----SCSCCC-CCSSCEEEEEECSS-SSCEEEEESSSCE
T ss_pred EeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC----cEEEEE-ecCCceEEEEECCC-CCeEEEEccCCeE
Confidence 35677887 78888 88999999988643211 123333 58999999999995 7899999999999
Q ss_pred EEEecCC---CcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC------eE--E
Q psy307 361 KLWEVYK---ERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH------RC--V 429 (1019)
Q Consensus 361 ~IWdl~~---~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~------~~--~ 429 (1019)
++||+.. ...++..+.+|...|.+++|+|++. .+|++|+.||.|++||+.... .. .
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-------------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 158 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQD-------------NVLASGGNNGEIFIWDMNKCTESPSNYTPLTP 158 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSST-------------TBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCCCC-------------CEEEEEcCCCeEEEEECCCCcccccccccccc
Confidence 9999965 2457888999999999999999832 789999999999999996554 22 2
Q ss_pred EEEccccccEeEEEEecC-CCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCC
Q psy307 430 RTYYGHRQAVRDICFNNT-GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTM 508 (1019)
Q Consensus 430 ~~l~~H~~~V~sl~fspd-g~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~ 508 (1019)
..+.+|...|.+++|+|+ +..|++++.|+.|++||+++++++..+..+... ..+.
T Consensus 159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------------------------~~~~ 214 (416)
T 2pm9_A 159 GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN------------------------SGIK 214 (416)
T ss_dssp CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS------------------------SCCC
T ss_pred ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc------------------------cccC
Confidence 234689999999999999 788999999999999999999887776543110 1124
Q ss_pred CcccEEEEcCCC-CEEEEEecCC---eEEEEEccCcccccceeEEe-ccccccceEEEEEcC-CCCEEEEEeCCCeEEEE
Q psy307 509 HSMPAVTSSPNN-KWLACQSMDN---KILIFSALNRFKLNRKKTFE-GHMVAGYACSLDFSP-DMSYLISGDADGKCYIW 582 (1019)
Q Consensus 509 ~~i~~v~~spdg-~~Lasgs~Dg---~I~iwd~~~~~~~~~~~~l~-gh~~~~~V~~v~fsp-dg~~Lasgs~DG~I~IW 582 (1019)
..+.+++|+|++ .++++++.|+ .|++||+++.. .....+. +|. ..|.+++|+| ++++|++|+.||.|++|
T Consensus 215 ~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~--~~~~~~~~~~~--~~v~~~~~s~~~~~~l~s~~~dg~v~~w 290 (416)
T 2pm9_A 215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN--TPLQTLNQGHQ--KGILSLDWCHQDEHLLLSSGRDNTVLLW 290 (416)
T ss_dssp CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT--SCSBCCCSCCS--SCEEEEEECSSCSSCEEEEESSSEEEEE
T ss_pred CceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC--CCcEEeecCcc--CceeEEEeCCCCCCeEEEEeCCCCEEEe
Confidence 567788888887 6899999998 99999998753 2234555 676 6799999999 99999999999999999
Q ss_pred eCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhc
Q psy307 583 DWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICS 662 (1019)
Q Consensus 583 Dl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~ 662 (1019)
|+.+++.+..+.+|.+.|.+++|+|+++.++++++.||.|++|. ............ ...... ...+.
T Consensus 291 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~-~~~~~~~~~~~~-----------~~~~~~-~~~~~ 357 (416)
T 2pm9_A 291 NPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQT-LQNLTNTLDEQE-----------TETKQQ-ESETD 357 (416)
T ss_dssp CSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEE-SCCCCCSSCC-------------------------
T ss_pred eCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEE-ccCCCCCccccc-----------cccccc-CCccc
Confidence 99999999999999999999999999867999999999997763 332211111000 000000 00000
Q ss_pred ccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCchhhHHH
Q psy307 663 GWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNASLEEK 726 (1019)
Q Consensus 663 ~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~~ 726 (1019)
.|. .+...+ .......... ....-+..+|.+++|||++ +.|+++..|++|+||+.
T Consensus 358 ~~~--~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg--~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 358 FWN--NVSREE----SKEKPSVFHL-QAPTWYGEPSPAAHWAFGG--KLVQITPDGKGVSITNP 412 (416)
T ss_dssp ---------------CCSCCCSSCC-CCCSTTCCCSCCCEEETTT--EEECBCTTSSCBCCBCC
T ss_pred ccc--cccccc----cccccccccc-cCCccccCCccceEEeeCC--eEEEEeCCCCeEEEEEe
Confidence 000 000000 0000000000 1111256678899999999 88999999999999974
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-32 Score=339.34 Aligned_cols=278 Identities=21% Similarity=0.286 Sum_probs=243.0
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.++++|+.++++..|+.|.+|+... .+.+.++.+|.+.|++++|+|+ +.+|++|+.||.|+|||+ ..++.+
T Consensus 20 ~~sp~~~~la~~~~~g~v~iwd~~~-------~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~-~~~~~~ 90 (814)
T 3mkq_A 20 DFHPTEPWVLTTLYSGRVEIWNYET-------QVEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRIRVFNY-NTGEKV 90 (814)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTT-------TEEEEEEECCSSCEEEEEEEGG-GTEEEEEETTSEEEEEET-TTCCEE
T ss_pred EECCCCCEEEEEeCCCEEEEEECCC-------CceEEEEecCCCcEEEEEEeCC-CCEEEEEeCCCeEEEEEC-CCCcEE
Confidence 4678999999999999999998753 4578899999999999999995 889999999999999999 556778
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec-CCCEE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN-TGTNF 451 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp-dg~~l 451 (1019)
..+.+|...|++++|+|++ .+|++|+.||.|++||+.........+.+|...|.+++|+| ++..|
T Consensus 91 ~~~~~~~~~v~~~~~s~~~--------------~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 156 (814)
T 3mkq_A 91 VDFEAHPDYIRSIAVHPTK--------------PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156 (814)
T ss_dssp EEEECCSSCEEEEEECSSS--------------SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred EEEecCCCCEEEEEEeCCC--------------CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEE
Confidence 8899999999999999999 68999999999999999777788999999999999999999 88899
Q ss_pred EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC--CCCEEEEEecC
Q psy307 452 ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP--NNKWLACQSMD 529 (1019)
Q Consensus 452 ~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp--dg~~Lasgs~D 529 (1019)
++++.||+|++||+.++.....+.. .+...+.+++|+| ++.+|++++.|
T Consensus 157 ~~~~~dg~v~vwd~~~~~~~~~~~~-----------------------------~~~~~v~~~~~~~~~~~~~l~~~~~d 207 (814)
T 3mkq_A 157 ASGCLDRTVKVWSLGQSTPNFTLTT-----------------------------GQERGVNYVDYYPLPDKPYMITASDD 207 (814)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEEC-----------------------------CCTTCCCEEEECCSTTCCEEEEECTT
T ss_pred EEEeCCCeEEEEECCCCcceeEEec-----------------------------CCCCCEEEEEEEECCCCCEEEEEeCC
Confidence 9999999999999987765444332 2235567788888 89999999999
Q ss_pred CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCC
Q psy307 530 NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609 (1019)
Q Consensus 530 g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~ 609 (1019)
|.|++||+.++ .....+.+|. ..|.+++|+|+|++|++|+.||.|++||+.+++.+..+..|...+.+++|+|++
T Consensus 208 g~i~~~d~~~~---~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 282 (814)
T 3mkq_A 208 LTIKIWDYQTK---SCVATLEGHM--SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282 (814)
T ss_dssp SEEEEEETTTT---EEEEEEECCS--SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTC
T ss_pred CEEEEEECCCC---cEEEEEcCCC--CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCC
Confidence 99999999876 3456777776 679999999999999999999999999999999999999999999999999998
Q ss_pred CcEEEEEeCCCcEEEEec
Q psy307 610 PSKVVTAGWDAATAKVQD 627 (1019)
Q Consensus 610 ~~~l~s~s~Dg~I~iwwd 627 (1019)
...+++++.|+.+.+|+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~ 300 (814)
T 3mkq_A 283 RKNYIASGFDNGFTVLSL 300 (814)
T ss_dssp GGGEEEEEETTEEEEEEC
T ss_pred CceEEEEEeCCCEEEEEc
Confidence 655566666777767653
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=333.38 Aligned_cols=313 Identities=23% Similarity=0.328 Sum_probs=241.0
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC----cEEEEEecccCccEeEEEEcCCCCceeEEEeec
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE----RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~----~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
+....+++|++.|++|+|+|+++.+|+|||.||+|+||++... +.+.+.+.+|...|.+++|+|++
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g---------- 442 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG---------- 442 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS----------
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC----------
Confidence 3445789999999999999988899999999999999998543 35667899999999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceE
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY 481 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~ 481 (1019)
.+|++|+.||+|+|||+ ..+.+...+.+|...|.+++|+|++++|++|+.|++|++||+...........
T Consensus 443 ----~~l~sgs~Dg~v~vwd~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~----- 512 (694)
T 3dm0_A 443 ----QFALSGSWDGELRLWDL-AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEG----- 512 (694)
T ss_dssp ----SEEEEEETTSEEEEEET-TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS-----
T ss_pred ----CEEEEEeCCCcEEEEEC-CCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccC-----
Confidence 69999999999999999 66788889999999999999999999999999999999999865432211110
Q ss_pred EEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC--CEEEEEecCCeEEEEEccCcccccceeEEeccccccceE
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN--KWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYAC 559 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg--~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~ 559 (1019)
...|...|.+++|+|++ ..|++++.|++|++||+.+. .....+.+|. +.|.
T Consensus 513 ----------------------~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~---~~~~~~~~h~--~~v~ 565 (694)
T 3dm0_A 513 ----------------------GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC---KLRSTLAGHT--GYVS 565 (694)
T ss_dssp ----------------------TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC---CEEEEECCCS--SCEE
T ss_pred ----------------------CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC---cEEEEEcCCC--CCEE
Confidence 12344567788888876 68999999999999999876 4457788887 7799
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccc
Q psy307 560 SLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEK 639 (1019)
Q Consensus 560 ~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~ 639 (1019)
+++|+|+|++|++|+.||+|+|||+.+++.+..+..+ ..|.+++|+|++ .++++ +.|+.|++ |+............
T Consensus 566 ~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~-~~l~~-~~~~~i~i-wd~~~~~~~~~~~~ 641 (694)
T 3dm0_A 566 TVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSPNR-YWLCA-ATEHGIKI-WDLESKSIVEDLKV 641 (694)
T ss_dssp EEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS-SCEEEEEECSSS-SEEEE-EETTEEEE-EETTTTEEEEEECC
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC-CcEEEEEEcCCC-cEEEE-EcCCCEEE-EECCCCCChhhhcc
Confidence 9999999999999999999999999999998888654 579999999987 45554 55666755 55544333322211
Q ss_pred cCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCC
Q psy307 640 QVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDK 719 (1019)
Q Consensus 640 ~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~ 719 (1019)
....... . ....... ...-+...|.+++|||++ +.|++++.||
T Consensus 642 ~~~~~~~-------~-----------~~~~~~~-----------------~~~~~~~~~~~l~~spdg--~~l~sgs~Dg 684 (694)
T 3dm0_A 642 DLKAEAE-------K-----------ADNSGPA-----------------ATKRKVIYCTSLNWSADG--STLFSGYTDG 684 (694)
T ss_dssp CCC---------------------------------------------------CCCCEEEEEECTTS--SEEEEEETTS
T ss_pred ccccccc-------c-----------ccccccc-----------------cCCceeEEeeeEEEcCCC--CEEEEEcCCC
Confidence 1100000 0 0000000 000112247789999999 7899999999
Q ss_pred chhhHHH
Q psy307 720 NASLEEK 726 (1019)
Q Consensus 720 ~i~lw~~ 726 (1019)
+|++|+.
T Consensus 685 ~i~iW~i 691 (694)
T 3dm0_A 685 VIRVWGI 691 (694)
T ss_dssp EEEEEEC
T ss_pred eEEEEec
Confidence 9999973
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=319.14 Aligned_cols=251 Identities=16% Similarity=0.148 Sum_probs=202.3
Q ss_pred eeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEE
Q psy307 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 330 ~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L 408 (1019)
.+..|.++|++++|+|+ +.+|++|+.||.|+|||+.... +++..+.+|...|.+++|+|++ ++|
T Consensus 6 ~~~~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~--------------~~l 70 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQ-RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS--------------NRI 70 (377)
T ss_dssp EEEECSSCCSCCEECSS-SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT--------------CCE
T ss_pred eEecCCCcEEEEEECCC-CCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC--------------CEE
Confidence 34557789999999995 8899999999999999995443 7788899999999999999998 689
Q ss_pred EEEeCCCcEEEEEccCCC--eEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCce---EEEEecCCceEEE
Q psy307 409 LSCSMDCRVKLWEVYKEH--RCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGEC---ISRFTSRKVAYCV 483 (1019)
Q Consensus 409 ~sgs~Dg~I~IWDl~~~~--~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~---i~~~~~~~~v~~v 483 (1019)
++|+.||.|++||+.... .....+.+|...|.+++|+|++++|++++.|++|++||+++++. ...+.
T Consensus 71 ~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------- 142 (377)
T 3dwl_C 71 VTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLK-------- 142 (377)
T ss_dssp EEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEEC--------
T ss_pred EEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEee--------
Confidence 999999999999995443 36777889999999999999999999999999999999987652 22222
Q ss_pred EEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcc---------------cccceeE
Q psy307 484 KFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRF---------------KLNRKKT 548 (1019)
Q Consensus 484 ~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~---------------~~~~~~~ 548 (1019)
.++...+.+++|+|++++|++++.||.|++||+.... .......
T Consensus 143 ---------------------~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (377)
T 3dwl_C 143 ---------------------RPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAE 201 (377)
T ss_dssp ---------------------SSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEEC
T ss_pred ---------------------cccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhc
Confidence 2255678889999999999999999999999985321 0122333
Q ss_pred EeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce----eeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEE
Q psy307 549 FEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKL----FKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAK 624 (1019)
Q Consensus 549 l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~----l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~i 624 (1019)
+ +|. +.|.+++|+|+|++|++|+.||.|+|||+.+++. +..+.+|...|.+++|+|++ .+|++++.|+ +.+
T Consensus 202 ~-~~~--~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~-~~~ 276 (377)
T 3dwl_C 202 Y-PSG--GWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES-AIVAAGYNYS-PIL 276 (377)
T ss_dssp C-CCS--SSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT-EEEEEESSSS-EEE
T ss_pred c-cCC--ceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC-CEEEEEcCCc-EEE
Confidence 4 565 7799999999999999999999999999999987 88899999999999999998 5777776555 447
Q ss_pred Eeccc
Q psy307 625 VQDAN 629 (1019)
Q Consensus 625 wwd~~ 629 (1019)
||...
T Consensus 277 ~~~~~ 281 (377)
T 3dwl_C 277 LQGNE 281 (377)
T ss_dssp ECCCC
T ss_pred EEeCC
Confidence 77764
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=296.22 Aligned_cols=263 Identities=18% Similarity=0.264 Sum_probs=208.0
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC-CcEEEEEecccCccEeEEEEcCC--CCceeEEEeecCCC
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-ERRCVRTYYGHRQAVRDICFNNT--GTNFISAIRWFPKS 404 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~-~~~~~~~~~gh~~~V~~i~fspd--g~~~vs~i~~~p~~ 404 (1019)
+..+.+|.+.|++++|+|+ +.+|++|+.|++|+|||+.. ..+++.++.+|..+|.+++|+++ +
T Consensus 2 ~~~~~~h~~~V~~~~~s~~-g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g------------- 67 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYY-GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG------------- 67 (297)
T ss_dssp CEECCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGC-------------
T ss_pred ceeccCCcCceEEEEECCC-CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcC-------------
Confidence 3567899999999999996 88999999999999999954 34678899999999999999864 4
Q ss_pred CcEEEEEeCCCcEEEEEccCCC-eEEEEEccccccEeEEEEecC--CCEEEEEEcCCeEEEEECCCCce--EEEEe-cCC
Q psy307 405 AHLLLSCSMDCRVKLWEVYKEH-RCVRTYYGHRQAVRDICFNNT--GTNFISAGYDRYLKLWDTESGEC--ISRFT-SRK 478 (1019)
Q Consensus 405 ~~~L~sgs~Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~fspd--g~~l~S~s~Dg~I~lWDl~t~~~--i~~~~-~~~ 478 (1019)
.+|++|+.|++|++||+.... ..+..+.+|...|.+++|+|+ +.+|++++.|++|++||++++.. ...+. +..
T Consensus 68 -~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~ 146 (297)
T 2pm7_B 68 -TILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146 (297)
T ss_dssp -SEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS
T ss_pred -CEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccC
Confidence 699999999999999996543 456778899999999999997 88999999999999999987632 22333 335
Q ss_pred ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCccc-ccceeEEeccccccc
Q psy307 479 VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFK-LNRKKTFEGHMVAGY 557 (1019)
Q Consensus 479 ~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~-~~~~~~l~gh~~~~~ 557 (1019)
.+.+++|+|+..... ......+++++|++|+.|++|++||+.+... ......+.+|. ..
T Consensus 147 ~v~~~~~~p~~~~~~------------------~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~--~~ 206 (297)
T 2pm7_B 147 GVNSASWAPATIEED------------------GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS--DW 206 (297)
T ss_dssp CEEEEEECCCC------------------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS--SC
T ss_pred ccceEeecCCccccc------------------ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCC--Cc
Confidence 567777777532100 0000123468999999999999999986532 22456788887 77
Q ss_pred eEEEEEcCCC---CEEEEEeCCCeEEEEeCCCCc---eeeee--eccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 558 ACSLDFSPDM---SYLISGDADGKCYIWDWKTTK---LFKKW--KAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 558 V~~v~fspdg---~~Lasgs~DG~I~IWDl~t~~---~l~~l--~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
|.+++|+|++ .+|++|+.||+|+|||+.++. ....+ ..|...|.+++|+|++ .+|++++.||+|++|.
T Consensus 207 V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 207 VRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWK 282 (297)
T ss_dssp EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEETTSCEEEEE
T ss_pred eEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCC-CEEEEEcCCCcEEEEE
Confidence 9999999995 899999999999999998753 12233 5678899999999998 6899999999998773
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=307.41 Aligned_cols=335 Identities=16% Similarity=0.191 Sum_probs=254.2
Q ss_pred eccCCCCeEEEEEcCCCCc-EEEEeeCCCeEEEEec----CCCcE-----EEEEecc----------cCccEeEEEEcCC
Q psy307 331 WEGHTKGISAIRWFPKSAH-LLLSCSMDCRVKLWEV----YKERR-----CVRTYYG----------HRQAVRDICFNNT 390 (1019)
Q Consensus 331 l~gH~~~V~~i~fspd~g~-lLaSgs~Dg~I~IWdl----~~~~~-----~~~~~~g----------h~~~V~~i~fspd 390 (1019)
...|.+.|++++|+|+ +. +|++|+.||.|++|++ ..... ....+.. |...|.+++|+|+
T Consensus 41 ~~~~~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 119 (425)
T 1r5m_A 41 EIVKLDNIVSSTWNPL-DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD 119 (425)
T ss_dssp EEEECSCCSEEEECSS-CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred eeeccCceEEEEECCC-CCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence 3456699999999997 56 9999999999999999 55442 3333433 6789999999998
Q ss_pred CCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCce
Q psy307 391 GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGEC 470 (1019)
Q Consensus 391 g~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~ 470 (1019)
+ .+|++|+.||.|++|| ..+..+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.
T Consensus 120 ~--------------~~l~~~~~dg~i~i~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 120 G--------------NSIVTGVENGELRLWN--KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp S--------------SEEEEEETTSCEEEEE--TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred C--------------CEEEEEeCCCeEEEEe--CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence 8 6999999999999999 56778888999999999999999999999999999999999999999
Q ss_pred EEEEecCCc----------------eEEEEEecCCCeeee---------ccCC-CceeeeCCCCCcccEEEEcCCCCEEE
Q psy307 471 ISRFTSRKV----------------AYCVKFHPDEDKQHL---------DIPV-DMKYIADPTMHSMPAVTSSPNNKWLA 524 (1019)
Q Consensus 471 i~~~~~~~~----------------v~~v~~~p~~~~~~~---------~~~~-~~~~i~~~~~~~i~~v~~spdg~~La 524 (1019)
+..+..+.. +.++.|+|++..... +... ........+...+.+++|+|++++|+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL 263 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence 888876543 778888887543322 1111 11223345677899999999999999
Q ss_pred EEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEE
Q psy307 525 CQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTL 604 (1019)
Q Consensus 525 sgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~ 604 (1019)
+++.||.|++||+.++ .....+.+|. ..+.+++|+|++ ++++++.||.|++||+.+++.+..+..|...|.+++
T Consensus 264 ~~~~d~~i~i~d~~~~---~~~~~~~~~~--~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 337 (425)
T 1r5m_A 264 SASDDGTLRIWHGGNG---NSQNCFYGHS--QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGR 337 (425)
T ss_dssp EEETTSCEEEECSSSB---SCSEEECCCS--SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred EEcCCCEEEEEECCCC---ccceEecCCC--ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEE
Confidence 9999999999999876 3446666776 679999999999 999999999999999999999999999999999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceE
Q psy307 605 WHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNY 684 (1019)
Q Consensus 605 ~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~ 684 (1019)
|+|++ .+|++++.||.|++| +....+.. ...+. ..... .+...... ....
T Consensus 338 ~s~~~-~~l~~~~~dg~i~i~-~~~~~~~~------~~~~~---------~~~~~---~~~~~~~~-~~~~--------- 387 (425)
T 1r5m_A 338 ISQDG-QKYAVAFMDGQVNVY-DLKKLNSK------SRSLY---------GNRDG---ILNPLPIP-LYAS--------- 387 (425)
T ss_dssp ECTTS-SEEEEEETTSCEEEE-ECHHHHC--------------------------------CEECC-EEEE---------
T ss_pred EcCCC-CEEEEEECCCeEEEE-ECCCCccc------eeeee---------ccccc---ccCcccch-hhhh---------
Confidence 99998 699999999999776 33221100 00000 00000 00000000 0000
Q ss_pred EeccccccccCC--ceEEEEecCCccHHHHHhhcCCCchhhHHH
Q psy307 685 ITEKNRNEIKNG--SVLRLAFSASKTADDILSKLSDKNASLEEK 726 (1019)
Q Consensus 685 it~~~~~~I~ng--~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~~ 726 (1019)
-..|.+ .|.+++|+|++ +.|+++..||.|++|+.
T Consensus 388 ------~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 388 ------YQSSQDNDYIFDLSWNCAG--NKISVAYSLQEGSVVAI 423 (425)
T ss_dssp ------ECCTTCCCCEEEEEECTTS--SEEEEEESSSCCEEEEC
T ss_pred ------hcCcccCCceEEEEccCCC--ceEEEEecCceEEEEee
Confidence 012433 89999999998 68889999999999963
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-31 Score=339.73 Aligned_cols=414 Identities=11% Similarity=0.098 Sum_probs=281.7
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
+++++|+.+++++.|+.|++|+.... ..... ..|...|++++|+| +.+|++++.|++|+|||+. .++++
T Consensus 24 afspdg~~lAsgs~Dg~I~lw~~~~~-------~~~~~-~~~~~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~-~~~~~ 92 (902)
T 2oaj_A 24 AFDFTQNLLAIATVTGEVHIYGQQQV-------EVVIK-LEDRSAIKEMRFVK--GIYLVVINAKDTVYVLSLY-SQKVL 92 (902)
T ss_dssp EEETTTTEEEEEETTSEEEEECSTTC-------EEEEE-CSSCCCEEEEEEET--TTEEEEEETTCEEEEEETT-TCSEE
T ss_pred EECCCCCEEEEEeCCCEEEEEeCCCc-------EEEEE-cCCCCCEEEEEEcC--CCEEEEEECcCeEEEEECC-CCcEE
Confidence 46789999999999999999976431 22333 35888999999999 4599999999999999994 45667
Q ss_pred EEecccCccEeEEEEcCCCCceeE----------------------------------------EEeecCCCCcEEEEEe
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFIS----------------------------------------AIRWFPKSAHLLLSCS 412 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs----------------------------------------~i~~~p~~~~~L~sgs 412 (1019)
..+. |...|++++|+|++..+++ +++|+|.+...|++|+
T Consensus 93 ~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~ 171 (902)
T 2oaj_A 93 TTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY 171 (902)
T ss_dssp EEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC
T ss_pred EEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe
Confidence 7775 6789999999999876543 4567777778999999
Q ss_pred CCCcEEEEEccCCCeEEEEEccc------------------cccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEE
Q psy307 413 MDCRVKLWEVYKEHRCVRTYYGH------------------RQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRF 474 (1019)
Q Consensus 413 ~Dg~I~IWDl~~~~~~~~~l~~H------------------~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~ 474 (1019)
.||.| +||+ ..++++..+..| ...|.+++|+|+|++|++++.||+|++||+++++++...
T Consensus 172 ~dg~v-lWd~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r 249 (902)
T 2oaj_A 172 EYVTL-TYSL-VENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMAR 249 (902)
T ss_dssp SSCEE-EEET-TTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred CCCcE-EEEC-CCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEE
Confidence 99999 9999 556777777665 578999999999999999999999999999999887642
Q ss_pred e-------------------cCCceEEEEEecC----CCeeee-c-cCC-----Cceeee--------------------
Q psy307 475 T-------------------SRKVAYCVKFHPD----EDKQHL-D-IPV-----DMKYIA-------------------- 504 (1019)
Q Consensus 475 ~-------------------~~~~v~~v~~~p~----~~~~~~-~-~~~-----~~~~i~-------------------- 504 (1019)
. ....+.+++|++. +...++ . ... ....+.
T Consensus 250 ~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~ 329 (902)
T 2oaj_A 250 TVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYA 329 (902)
T ss_dssp CSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHH
T ss_pred eecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhc
Confidence 1 1236889999653 222222 1 110 111111
Q ss_pred ---------CCCCCcccEEEEcC----------CCCEEEEEecCCeEEEEEccCcccccc--------------------
Q psy307 505 ---------DPTMHSMPAVTSSP----------NNKWLACQSMDNKILIFSALNRFKLNR-------------------- 545 (1019)
Q Consensus 505 ---------~~~~~~i~~v~~sp----------dg~~Lasgs~Dg~I~iwd~~~~~~~~~-------------------- 545 (1019)
..+...+..+.+.+ ++..+++++.||.|++||+.++.....
T Consensus 330 ~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~ 409 (902)
T 2oaj_A 330 NPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMA 409 (902)
T ss_dssp SCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEE
T ss_pred CccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEE
Confidence 12345566666654 344788999999999999865421110
Q ss_pred ------------------eeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--eee----e-----cc
Q psy307 546 ------------------KKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLF--KKW----K-----AH 596 (1019)
Q Consensus 546 ------------------~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l--~~l----~-----~h 596 (1019)
...+.||. ..+.+++|+|+|++|++|+.||+|++||+.++... ..+ . +|
T Consensus 410 s~~~~~~w~~~~~~~~~~~~~l~G~~--~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h 487 (902)
T 2oaj_A 410 ASVPNKLWLGALSAAQNKDYLLKGGV--RTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAK 487 (902)
T ss_dssp EEEEHHHHHHHHHTTBCCCCSCCCSB--CCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSS
T ss_pred EEcCHHHHHHHHhcccCCCCcccCCc--CCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCC
Confidence 00123333 34556788999999999999999999999887532 111 1 78
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeee--------e---------ccccCCceee------------c
Q psy307 597 DGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAV--------E---------MEKQVPQLYQ------------F 647 (1019)
Q Consensus 597 ~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~--------e---------~~~~v~ql~~------------l 647 (1019)
...|.+++|+|++ .+||+|+.||+|++| +....+... . .......... +
T Consensus 488 ~~~V~svafspdg-~~LAsgs~DgtV~lw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 565 (902)
T 2oaj_A 488 ELAVDKISFAAET-LELAVSIETGDVVLF-KYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF 565 (902)
T ss_dssp SCCEEEEEEETTT-TEEEEEETTSCEEEE-EEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred CCceeEEEecCCC-CeEEEEecCcEEEEE-EecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence 8999999999998 699999999999776 333221100 0 0000000000 0
Q ss_pred ccccccchhhhhhhcccccCCCceeEEEeecCCCceEEecccccc-----------ccCCceEEEEec-----CCc-cHH
Q psy307 648 NQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNE-----------IKNGSVLRLAFS-----ASK-TAD 710 (1019)
Q Consensus 648 ~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~-----------I~ng~Vl~LafS-----Pd~-~a~ 710 (1019)
.....+.. ....+....+++.. ++...+.+....+|....... -|.+.|++|+|| ||+ ..+
T Consensus 566 ~~~~~l~~-h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~ 643 (902)
T 2oaj_A 566 MPSTAVHA-NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSI 643 (902)
T ss_dssp EEEEEECC-CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEE
T ss_pred ceeEEEEc-CCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcce
Confidence 00000110 11122222344333 555555555555666444322 356679999999 884 246
Q ss_pred HHHhhcCCCchhhHHH
Q psy307 711 DILSKLSDKNASLEEK 726 (1019)
Q Consensus 711 ~Ilt~~~d~~i~lw~~ 726 (1019)
.|++++.|++|++|+.
T Consensus 644 ~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 644 LMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEEEETTSEEEEEEE
T ss_pred EEEEEecCCcEEEEEE
Confidence 7999999999999985
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-30 Score=287.93 Aligned_cols=302 Identities=13% Similarity=0.126 Sum_probs=246.0
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc--E
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER--R 370 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~--~ 370 (1019)
.++++|+.++.+..++.+..|.... ........+|.+.|++++|+|+ +.+|++++ ||.|++||+.... .
T Consensus 16 ~~s~dg~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 16 HVTADGQMQPVPFPPDALIGPGIPR-------HARQINTLNHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EECSSSCEEECCCCTTSSSSTTCCS-------EEEEEEEECCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred EECCCCCEEEeecCCCcEeccccCC-------ccccceeccCCCceEEEEEecC-CcEEEEcC-CCeEEEEECCCCCcee
Confidence 4678999998888777666664331 1223344589999999999995 78899998 9999999996432 1
Q ss_pred EEEEec--ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC-eEEEEEccccccEeEEEEecC
Q psy307 371 CVRTYY--GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH-RCVRTYYGHRQAVRDICFNNT 447 (1019)
Q Consensus 371 ~~~~~~--gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~fspd 447 (1019)
.+..+. +|...|.+++|+|++ ++|++++.||.|++||+.... .....+.+|...|.+++|+|+
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~--------------~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 152 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDG--------------CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD 152 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTS--------------SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT
T ss_pred eeecccccCCCCcEEEEEEcCCC--------------CEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCC
Confidence 233333 789999999999988 689999999999999995543 256778899999999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCceEEEEec-CCceEEEEEecCCCeeeeccCC----------CceeeeCCCCCcccEEEE
Q psy307 448 GTNFISAGYDRYLKLWDTESGECISRFTS-RKVAYCVKFHPDEDKQHLDIPV----------DMKYIADPTMHSMPAVTS 516 (1019)
Q Consensus 448 g~~l~S~s~Dg~I~lWDl~t~~~i~~~~~-~~~v~~v~~~p~~~~~~~~~~~----------~~~~i~~~~~~~i~~v~~ 516 (1019)
++++++++.||.|++||+++++.+..+.. ...+.+++|+|++...+..... ........+...+.+++|
T Consensus 153 ~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~ 232 (337)
T 1gxr_A 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGY 232 (337)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred CCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEE
Confidence 99999999999999999999999988875 4678999999998766553222 222222234567889999
Q ss_pred cCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc
Q psy307 517 SPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH 596 (1019)
Q Consensus 517 spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h 596 (1019)
+|++++|++++.||.|++||+.+.. ...+..|. ..+.+++|+|+|++|++++.||.|++||+.+++.+... .|
T Consensus 233 s~~~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~ 305 (337)
T 1gxr_A 233 CPTGEWLAVGMESSNVEVLHVNKPD----KYQLHLHE--SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KE 305 (337)
T ss_dssp CTTSSEEEEEETTSCEEEEETTSSC----EEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-EC
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCC----eEEEcCCc--cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cC
Confidence 9999999999999999999998753 23556665 77999999999999999999999999999999887544 57
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 597 DGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 597 ~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
...|.+++|+|++ .++++++.||.|++|
T Consensus 306 ~~~v~~~~~s~~~-~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 306 SSSVLSCDISVDD-KYIVTGSGDKKATVY 333 (337)
T ss_dssp SSCEEEEEECTTS-CEEEEEETTSCEEEE
T ss_pred CCcEEEEEECCCC-CEEEEecCCCeEEEE
Confidence 8899999999998 699999999999776
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=299.60 Aligned_cols=265 Identities=19% Similarity=0.292 Sum_probs=201.6
Q ss_pred eeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-EEEEEecccCccEeEEEEcCC--CCceeEEEeecCCCCc
Q psy307 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-RCVRTYYGHRQAVRDICFNNT--GTNFISAIRWFPKSAH 406 (1019)
Q Consensus 330 ~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~~~~~~~gh~~~V~~i~fspd--g~~~vs~i~~~p~~~~ 406 (1019)
.+.+|.+.|++++|+|+ +.+|++|+.|++|+|||+.... .++..+.+|...|.+++|+++ + .
T Consensus 8 ~~~~H~~~V~~v~~s~~-g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~--------------~ 72 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYY-GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG--------------N 72 (316)
T ss_dssp ------CCEEEEEECGG-GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGS--------------S
T ss_pred ecccccCeEEEeeEcCC-CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCC--------------C
Confidence 46799999999999996 8899999999999999996543 357789999999999999863 4 6
Q ss_pred EEEEEeCCCcEEEEEccCCC-eEEEEEccccccEeEEEEecC--CCEEEEEEcCCeEEEEECCCCceEE---EEe-cCCc
Q psy307 407 LLLSCSMDCRVKLWEVYKEH-RCVRTYYGHRQAVRDICFNNT--GTNFISAGYDRYLKLWDTESGECIS---RFT-SRKV 479 (1019)
Q Consensus 407 ~L~sgs~Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~fspd--g~~l~S~s~Dg~I~lWDl~t~~~i~---~~~-~~~~ 479 (1019)
+|++|+.|++|++||+.... .....+.+|...|.+++|+|+ +.+|++|+.|++|++||++++.... .+. +...
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~ 152 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIG 152 (316)
T ss_dssp CEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSC
T ss_pred EEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCC
Confidence 89999999999999996543 467788999999999999998 7899999999999999998764221 111 1234
Q ss_pred eEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceE
Q psy307 480 AYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYAC 559 (1019)
Q Consensus 480 v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~ 559 (1019)
+.++.|+|+.....+ +.... . ...+++++|++|+.|++|++||+...........+.+|. ..|.
T Consensus 153 v~~~~~~~~~~~~~~--------~~~~~-~-----~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~--~~V~ 216 (316)
T 3bg1_A 153 CNAVSWAPAVVPGSL--------IDHPS-G-----QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHS--DWVR 216 (316)
T ss_dssp BCCCEECCCCCC--------------CC-S-----CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCS--SCEE
T ss_pred cceEEEccccCCccc--------ccccc-c-----cCccccceEEEecCCCeEEEEEeCCCCccceeeecccCC--CceE
Confidence 556666665320000 00000 0 001235789999999999999997543333456678887 7799
Q ss_pred EEEEcCCC----CEEEEEeCCCeEEEEeCCCCc----eeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 560 SLDFSPDM----SYLISGDADGKCYIWDWKTTK----LFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 560 ~v~fspdg----~~Lasgs~DG~I~IWDl~t~~----~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
+++|+|++ .+|++|+.||+|+|||+.+.. ....+..|.+.|.+++|+|++ .+|++++.||+|++|.
T Consensus 217 ~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 217 DVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA-NILAVSGGDNKVTLWK 290 (316)
T ss_dssp EEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTT-CCEEEEESSSCEEEEE
T ss_pred EEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEE
Confidence 99999987 899999999999999997631 234566789999999999998 6899999999998873
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=345.65 Aligned_cols=376 Identities=18% Similarity=0.237 Sum_probs=282.4
Q ss_pred ceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCc
Q psy307 327 QVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAH 406 (1019)
Q Consensus 327 ~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~ 406 (1019)
....+.+|.+.|++++|+|+ +.+|++|+.||+|+|||+ ..+.++..+.+|...|.+++|+|+| .
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~vw~~-~~~~~~~~~~~h~~~v~~~~~s~~~--------------~ 670 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQD-GQRIASCGADKTLQVFKA-ETGEKLLDIKAHEDEVLCCAFSSDD--------------S 670 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEET-TTCCEEEEECCCSSCEEEEEECTTS--------------S
T ss_pred ceEEEecccccEEEEEECCC-CCEEEEEeCCCeEEEEEC-CCCCEEEEeccCCCCEEEEEEecCC--------------C
Confidence 34578899999999999996 889999999999999999 5567788999999999999999998 6
Q ss_pred EEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec--CCCEEEEEEcCCeEEEEECCCCceEEEEecC-CceEEE
Q psy307 407 LLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN--TGTNFISAGYDRYLKLWDTESGECISRFTSR-KVAYCV 483 (1019)
Q Consensus 407 ~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp--dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~-~~v~~v 483 (1019)
+|++|+.||.|++||+ .+++++..+.+|...|.+++|+| ++..+++|+.|++|++||+++++++..+..+ ..+.++
T Consensus 671 ~l~s~~~d~~v~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~ 749 (1249)
T 3sfz_A 671 YIATCSADKKVKIWDS-ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749 (1249)
T ss_dssp EEEEEETTSEEEEEET-TTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEE
T ss_pred EEEEEeCCCeEEEEEC-CCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEE
Confidence 9999999999999999 56788899999999999999999 4557999999999999999999999888755 678999
Q ss_pred EEecCCCeeeeccCCCceeeeC------------------------CCCCcccEEEEcCCCCEEEEEecCCeEEEEEccC
Q psy307 484 KFHPDEDKQHLDIPVDMKYIAD------------------------PTMHSMPAVTSSPNNKWLACQSMDNKILIFSALN 539 (1019)
Q Consensus 484 ~~~p~~~~~~~~~~~~~~~i~~------------------------~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~ 539 (1019)
+|+|++...+.........+++ .....+.+++|+|+|+.+++++ ++.|.+||+.+
T Consensus 750 ~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~ 828 (1249)
T 3sfz_A 750 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHT 828 (1249)
T ss_dssp EECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTT
T ss_pred EEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecC
Confidence 9999987665533222222111 1123678899999999999987 79999999987
Q ss_pred cccccceeEE-eccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeC
Q psy307 540 RFKLNRKKTF-EGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGW 618 (1019)
Q Consensus 540 ~~~~~~~~~l-~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~ 618 (1019)
+... ..+ .+|. ..+.+++|+|++.++++|+.||.|++||+.++..+..+.+|.+.|.+++|+|++ ..+++++.
T Consensus 829 ~~~~---~~~~~~~~--~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg-~~l~s~s~ 902 (1249)
T 3sfz_A 829 SGLL---AEIHTGHH--STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG-SSFLTASD 902 (1249)
T ss_dssp CCEE---EEEECSSS--SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEET
T ss_pred CCce---eEEcCCCC--CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCC-CEEEEEeC
Confidence 7433 333 3555 679999999999999999999999999999999999999999999999999998 68999999
Q ss_pred CCcEEEEeccceeee---------eeeccccCCceeecc----------cccccchhhhhhhcccccCCCceeEEEeecC
Q psy307 619 DAATAKVQDANIVKI---------AVEMEKQVPQLYQFN----------QTLTLSSIIQEICSGWSLSDSEQYALQFSET 679 (1019)
Q Consensus 619 Dg~I~iwwd~~i~ki---------~~e~~~~v~ql~~l~----------~~~~LSs~~~~~~~~wsls~~e~~al~~sd~ 679 (1019)
||.|++|.-...... ............... .................+++...+++....+
T Consensus 903 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~ 982 (1249)
T 3sfz_A 903 DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDED 982 (1249)
T ss_dssp TSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETT
T ss_pred CCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCC
Confidence 999987742211000 000000000000000 0000000001111122233333344444444
Q ss_pred CCceEEeccccccc-----cCCceEEEEecCCccHHHHHhhcCCCchhhHHHHH
Q psy307 680 NNKNYITEKNRNEI-----KNGSVLRLAFSASKTADDILSKLSDKNASLEEKTA 728 (1019)
Q Consensus 680 ~~~~~it~~~~~~I-----~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~~~~ 728 (1019)
+...++.......+ |.+.|.+++|+|++ +.+++++.|++|++|+.-.
T Consensus 983 g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg--~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 983 GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG--KTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp SCCEEEETTTTSCEEECCCCSSCCCCEEECSSS--SCEEEECSSSBEEEEETTT
T ss_pred CCEEEEEcCCCceeeecccCCCceEEEEECCCC--CEEEEEcCCCEEEEEECCC
Confidence 44545554444333 68899999999998 7899999999999998533
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-30 Score=293.74 Aligned_cols=315 Identities=19% Similarity=0.298 Sum_probs=242.5
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
.....+.+|.+.|++++|+|+ +.+|++|+.||.|++||+ ..++.+..+.+|...|.+++|+|++
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~h~~~v~~~~~~~~~-------------- 86 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKE-GDLLFSCSKDSSASVWYS-LNGERLGTLDGHTGTIWSIDVDCFT-------------- 86 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTT-SCEEEEEESSSCEEEEET-TTCCEEEEECCCSSCEEEEEECTTS--------------
T ss_pred cccEEEEEeeceEEEEEEcCC-CCEEEEEeCCCEEEEEeC-CCchhhhhhhhcCCcEEEEEEcCCC--------------
Confidence 345678999999999999995 889999999999999999 5567888999999999999999988
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcC-----CeEEEEECCCCceEEEEec--CC
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD-----RYLKLWDTESGECISRFTS--RK 478 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~D-----g~I~lWDl~t~~~i~~~~~--~~ 478 (1019)
++|++++.||.|++||+ ..++++..+. |...|.+++|+|+++++++++.+ +.|++||+..+.....+.. ..
T Consensus 87 ~~l~s~~~dg~i~iwd~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 164 (369)
T 3zwl_B 87 KYCVTGSADYSIKLWDV-SNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE 164 (369)
T ss_dssp SEEEEEETTTEEEEEET-TTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS
T ss_pred CEEEEEeCCCeEEEEEC-CCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccc
Confidence 68999999999999999 4556666666 88999999999999999999999 9999999876543222111 00
Q ss_pred ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccce
Q psy307 479 VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYA 558 (1019)
Q Consensus 479 ~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V 558 (1019)
.+. ..........+.+++|+|++++|++++.||.|++||+.+.. .....+..|. ..|
T Consensus 165 ~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~--~~v 221 (369)
T 3zwl_B 165 PIH-------------------KIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY--EYVDSIDLHE--KSI 221 (369)
T ss_dssp CSE-------------------EEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT--EEEEEEECCS--SCE
T ss_pred eee-------------------eccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc--EeEEEEecCC--Cce
Confidence 111 11111122378899999999999999999999999998732 3456677776 679
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeecc
Q psy307 559 CSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEME 638 (1019)
Q Consensus 559 ~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~ 638 (1019)
.+++|+|++++|++++.||.|++||+.+++.+..+. +...+.+++|+|++ .++++++.++.+.+|-.....
T Consensus 222 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~------- 292 (369)
T 3zwl_B 222 SDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSANE------- 292 (369)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSS-SEEEEEECCC------------------
T ss_pred eEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCC-ceEEEeecCCCceEEEEecCC-------
Confidence 999999999999999999999999999999998887 67789999999998 688888888866443111000
Q ss_pred ccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCC
Q psy307 639 KQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSD 718 (1019)
Q Consensus 639 ~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d 718 (1019)
....+..|+...+.... . + ..|.+.|.+++|+|++ +.|+++..|
T Consensus 293 ------------------~~~~i~~~d~~~~~~~~-~---------~------~~~~~~v~~~~~s~~~--~~l~s~~~d 336 (369)
T 3zwl_B 293 ------------------GKFEARFYHKIFEEEIG-R---------V------QGHFGPLNTVAISPQG--TSYASGGED 336 (369)
T ss_dssp --------------------CEEEEEETTTCCEEE-E---------E------ECCSSCEEEEEECTTS--SEEEEEETT
T ss_pred ------------------CcceeEEEecCCCcchh-h---------e------ecccCcEEEEEECCCC--CEEEEEcCC
Confidence 00011122222222110 0 0 1367899999999998 789999999
Q ss_pred CchhhHHH
Q psy307 719 KNASLEEK 726 (1019)
Q Consensus 719 ~~i~lw~~ 726 (1019)
|.|++|+.
T Consensus 337 g~v~iw~~ 344 (369)
T 3zwl_B 337 GFIRLHHF 344 (369)
T ss_dssp SEEEEEEE
T ss_pred CeEEEEEC
Confidence 99999984
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-32 Score=321.57 Aligned_cols=281 Identities=11% Similarity=0.045 Sum_probs=211.4
Q ss_pred CCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCC-----CCcEEEEeeCCCeEEEEecCCCc
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPK-----SAHLLLSCSMDCRVKLWEVYKER 369 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd-----~g~lLaSgs~Dg~I~IWdl~~~~ 369 (1019)
+++++.+++++.|+.|+||+...... ......++.+|.+.|.+++|+|+ ++.+||+|+.||+|+|||+....
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~---~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~ 246 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTL---HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNA 246 (524)
T ss_dssp ------------CEEEEEEEEETTTC---CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCS
T ss_pred chhhhhhccCCCCceEEEEEccCCCC---CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCc
Confidence 57788899999999999998754321 11234567889999999999996 25799999999999999995432
Q ss_pred ----------EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccE
Q psy307 370 ----------RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAV 439 (1019)
Q Consensus 370 ----------~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V 439 (1019)
.+...+.+|...|.+++|++++ .|++|+.||+|++||+.....+...+.+|...|
T Consensus 247 ~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~---------------~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V 311 (524)
T 2j04_B 247 TDVHVFKMCEKPSLTLSLADSLITTFDFLSPT---------------TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYI 311 (524)
T ss_dssp SSSSEEECCCSCSEEECCTTTCEEEEEESSSS---------------EEEEEETTSEEEEEETTBCSSCSEEEECSSSCE
T ss_pred cccccceeecCceEEEEcCCCCEEEEEecCCC---------------eEEEEeCCCEEEEEECCCCCCceEEeecccccE
Confidence 1234678898999998888643 799999999999999976656667789999999
Q ss_pred eEE--EEecCC-CEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEE
Q psy307 440 RDI--CFNNTG-TNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTS 516 (1019)
Q Consensus 440 ~sl--~fspdg-~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~ 516 (1019)
.+| +|+|++ .+|+|||.|++|+|||+++++++..+..+. ....+.+++|
T Consensus 312 ~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~----------------------------~~~~v~~v~f 363 (524)
T 2j04_B 312 LSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF----------------------------RGSNLVPVVY 363 (524)
T ss_dssp EEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC----------------------------SCCSCCCEEE
T ss_pred EEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc----------------------------ccCcccceEe
Confidence 999 578887 899999999999999998877654433210 1123667889
Q ss_pred cCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCC----------
Q psy307 517 SPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKT---------- 586 (1019)
Q Consensus 517 spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t---------- 586 (1019)
+|+++.+++++.|++|++||++++. ....+.+|. +.|.+++|+|+|++|++|+.||+|+|||+..
T Consensus 364 sp~~~~l~s~~~d~tv~lwd~~~~~---~~~~l~gH~--~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~ 438 (524)
T 2j04_B 364 CPQIYSYIYSDGASSLRAVPSRAAF---AVHPLVSRE--TTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSS 438 (524)
T ss_dssp ETTTTEEEEECSSSEEEEEETTCTT---CCEEEEECS--SCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC----
T ss_pred CCCcCeEEEeCCCCcEEEEECcccc---cceeeecCC--CceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCc
Confidence 9999999999999999999998863 346677887 7899999999999999999999999998532
Q ss_pred ----------------------------------CceeeeeeccCCCEEEEEEcCCC--CcEEEEEeCCCcEEEEe
Q psy307 587 ----------------------------------TKLFKKWKAHDGVCISTLWHPHE--PSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 587 ----------------------------------~~~l~~l~~h~~~V~sl~~sp~~--~~~l~s~s~Dg~I~iww 626 (1019)
+..+.++.+|.+.|.+++|+|++ ..++++|+.||.|++|.
T Consensus 439 ~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 439 ATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp --CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred cceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 11123345688899999999996 25899999999998874
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-30 Score=292.45 Aligned_cols=284 Identities=18% Similarity=0.289 Sum_probs=233.3
Q ss_pred CCccceeeeccCCCCeEEEEEcCCC--CcEEEEeeCCCeEEEEecCC-CcEEEEEecccCccEeEEEEcCCCCceeEEEe
Q psy307 323 LPKTQVHTWEGHTKGISAIRWFPKS--AHLLLSCSMDCRVKLWEVYK-ERRCVRTYYGHRQAVRDICFNNTGTNFISAIR 399 (1019)
Q Consensus 323 lp~~~i~~l~gH~~~V~~i~fspd~--g~lLaSgs~Dg~I~IWdl~~-~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~ 399 (1019)
.|.+.+..+.+|.+.|++++|+|++ +.+|++|+.||.|+|||+.. .......+.+|...|.+++|+|++
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------- 98 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG-------- 98 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS--------
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC--------
Confidence 4667888999999999999999976 79999999999999999976 444448889999999999999998
Q ss_pred ecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEE--ecCCCEEEEEEcCCeEEEEECCCCceEEEEecC
Q psy307 400 WFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICF--NNTGTNFISAGYDRYLKLWDTESGECISRFTSR 477 (1019)
Q Consensus 400 ~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~f--spdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~ 477 (1019)
.+|++|+.||.|++||+. .+..+. +.+|...|.+++| ++++.+|++++.||.|++||+++++++..+..+
T Consensus 99 ------~~l~s~~~dg~v~iwd~~-~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 170 (368)
T 3mmy_A 99 ------SKVFTASCDKTAKMWDLS-SNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP 170 (368)
T ss_dssp ------SEEEEEETTSEEEEEETT-TTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS
T ss_pred ------CEEEEEcCCCcEEEEEcC-CCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC
Confidence 689999999999999994 444444 6779999999999 899999999999999999999999999999888
Q ss_pred CceEEEEEecCC--------CeeeeccCCC---ceeeeCCCCCcccEEEEcCCCCE----EEEEecCCeEEEEEccCccc
Q psy307 478 KVAYCVKFHPDE--------DKQHLDIPVD---MKYIADPTMHSMPAVTSSPNNKW----LACQSMDNKILIFSALNRFK 542 (1019)
Q Consensus 478 ~~v~~v~~~p~~--------~~~~~~~~~~---~~~i~~~~~~~i~~v~~spdg~~----Lasgs~Dg~I~iwd~~~~~~ 542 (1019)
..+.++.+.++. ....++.... .........+.+.++++.+++.. +++++.||.|++|++.....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~ 250 (368)
T 3mmy_A 171 ERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP 250 (368)
T ss_dssp SCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH
T ss_pred CCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc
Confidence 777777766531 1122222211 12222334455667777666655 99999999999999987654
Q ss_pred ccceeEEeccccc----------cceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcE
Q psy307 543 LNRKKTFEGHMVA----------GYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSK 612 (1019)
Q Consensus 543 ~~~~~~l~gh~~~----------~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~ 612 (1019)
......+.+|... ..|.+++|+|+|++|++|+.||.|+|||+.+++++..+.+|.+.|.+++|+|++ .+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g-~~ 329 (368)
T 3mmy_A 251 AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNG-NI 329 (368)
T ss_dssp HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTS-SC
T ss_pred cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCC-Ce
Confidence 4556677777521 169999999999999999999999999999999999999999999999999998 68
Q ss_pred EEEEeCCCcEE
Q psy307 613 VVTAGWDAATA 623 (1019)
Q Consensus 613 l~s~s~Dg~I~ 623 (1019)
|++++.|+..+
T Consensus 330 l~~~s~d~~~~ 340 (368)
T 3mmy_A 330 FAYASSYDWSK 340 (368)
T ss_dssp EEEEECCCSTT
T ss_pred EEEEecccccc
Confidence 99999888543
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-30 Score=321.62 Aligned_cols=272 Identities=21% Similarity=0.325 Sum_probs=225.1
Q ss_pred CCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec
Q psy307 297 QGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY 376 (1019)
Q Consensus 297 ~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~ 376 (1019)
.++.+++++.|+.|++|+...... ......+.+.+|.+.|++++|+|+ +.+|+||+.||+|+|||+ ..+.+++.+.
T Consensus 394 ~~~~l~s~s~D~~i~~W~~~~~~~--~~~~~~~~~~~h~~~v~~v~~s~~-g~~l~sgs~Dg~v~vwd~-~~~~~~~~~~ 469 (694)
T 3dm0_A 394 NADIIVSASRDKSIILWKLTKDDK--AYGVAQRRLTGHSHFVEDVVLSSD-GQFALSGSWDGELRLWDL-AAGVSTRRFV 469 (694)
T ss_dssp CCSEEEEEETTSEEEEEECCCSTT--CSCEEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEET-TTTEEEEEEE
T ss_pred CCCEEEEEeCCCcEEEEEccCCCc--ccccccceecCCCCcEEEEEECCC-CCEEEEEeCCCcEEEEEC-CCCcceeEEe
Confidence 357899999999999998764322 223456789999999999999996 889999999999999999 5667888999
Q ss_pred ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEE---ccccccEeEEEEecCC--CEE
Q psy307 377 GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY---YGHRQAVRDICFNNTG--TNF 451 (1019)
Q Consensus 377 gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l---~~H~~~V~sl~fspdg--~~l 451 (1019)
+|...|.+++|+|++ .+|++|+.|++|++||+.. ....... .+|...|.+++|+|++ ..|
T Consensus 470 ~h~~~v~~~~~s~~~--------------~~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 534 (694)
T 3dm0_A 470 GHTKDVLSVAFSLDN--------------RQIVSASRDRTIKLWNTLG-ECKYTISEGGEGHRDWVSCVRFSPNTLQPTI 534 (694)
T ss_dssp CCSSCEEEEEECTTS--------------SCEEEEETTSCEEEECTTS-CEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred CCCCCEEEEEEeCCC--------------CEEEEEeCCCEEEEEECCC-CcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence 999999999999998 6899999999999999843 2222222 4789999999999987 579
Q ss_pred EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCe
Q psy307 452 ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNK 531 (1019)
Q Consensus 452 ~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~ 531 (1019)
++++.|++|++||++++++...+.. |...|.+++|+|+|++|++|+.||.
T Consensus 535 ~s~s~d~~v~vwd~~~~~~~~~~~~------------------------------h~~~v~~v~~spdg~~l~sg~~Dg~ 584 (694)
T 3dm0_A 535 VSASWDKTVKVWNLSNCKLRSTLAG------------------------------HTGYVSTVAVSPDGSLCASGGKDGV 584 (694)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECC------------------------------CSSCEEEEEECTTSSEEEEEETTSB
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcC------------------------------CCCCEEEEEEeCCCCEEEEEeCCCe
Confidence 9999999999999998887665543 3356778888999999999999999
Q ss_pred EEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccC--------------
Q psy307 532 ILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHD-------------- 597 (1019)
Q Consensus 532 I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~-------------- 597 (1019)
|++||+.++.. +..+..+ ..+.+++|+|++.+|++++ ++.|+|||+.+++.+..+..+.
T Consensus 585 i~iwd~~~~~~---~~~~~~~---~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (694)
T 3dm0_A 585 VLLWDLAEGKK---LYSLEAN---SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAA 657 (694)
T ss_dssp CEEEETTTTEE---EECCBCS---SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC-------------
T ss_pred EEEEECCCCce---EEEecCC---CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccccccccccccc
Confidence 99999988733 2333333 5699999999999888775 5569999999998887765332
Q ss_pred -----CCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 598 -----GVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 598 -----~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
..|++++|+|++ .+|++|+.||+|++|
T Consensus 658 ~~~~~~~~~~l~~spdg-~~l~sgs~Dg~i~iW 689 (694)
T 3dm0_A 658 TKRKVIYCTSLNWSADG-STLFSGYTDGVIRVW 689 (694)
T ss_dssp ---CCCCEEEEEECTTS-SEEEEEETTSEEEEE
T ss_pred CCceeEEeeeEEEcCCC-CEEEEEcCCCeEEEE
Confidence 137899999998 699999999999777
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-30 Score=293.09 Aligned_cols=288 Identities=13% Similarity=0.222 Sum_probs=227.4
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeC---CCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSM---DCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFP 402 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~---Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p 402 (1019)
...+.+++|.+.|++++|+|++..++++|+. ||.|+|||+...........+|...|.+++|+|++.
T Consensus 9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------- 78 (357)
T 3i2n_A 9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSL---------- 78 (357)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCT----------
T ss_pred HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCC----------
Confidence 4456678999999999999986677888887 999999999655443344458999999999999830
Q ss_pred CCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEE------ecCCCEEEEEEcCCeEEEEECCCCc-eEEEEe
Q psy307 403 KSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICF------NNTGTNFISAGYDRYLKLWDTESGE-CISRFT 475 (1019)
Q Consensus 403 ~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~f------spdg~~l~S~s~Dg~I~lWDl~t~~-~i~~~~ 475 (1019)
++.+|++|+.||.|++||+......+..+.+|...|.++.| +|+++.|++++.||+|++||++++. .+..+.
T Consensus 79 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 157 (357)
T 3i2n_A 79 -QQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME 157 (357)
T ss_dssp -TTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEEC
T ss_pred -CCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecc
Confidence 12689999999999999996665588889999999999955 6889999999999999999999987 666665
Q ss_pred cC-----CceEEEE----EecCCCeeeecc----------CCCceeeeCCCCCcccEEEEcC---CCCEEEEEecCCeEE
Q psy307 476 SR-----KVAYCVK----FHPDEDKQHLDI----------PVDMKYIADPTMHSMPAVTSSP---NNKWLACQSMDNKIL 533 (1019)
Q Consensus 476 ~~-----~~v~~v~----~~p~~~~~~~~~----------~~~~~~i~~~~~~~i~~v~~sp---dg~~Lasgs~Dg~I~ 533 (1019)
.+ ..+.++. |+|++...+... ..........+...+.+++|+| ++.+|++++.||.|+
T Consensus 158 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 237 (357)
T 3i2n_A 158 PVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFH 237 (357)
T ss_dssp CCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred ccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence 42 2677777 667776555422 2222223344567899999999 999999999999999
Q ss_pred EEEccCccccccee--EEeccccccceEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC-------------------ceee
Q psy307 534 IFSALNRFKLNRKK--TFEGHMVAGYACSLDFSPDMS-YLISGDADGKCYIWDWKTT-------------------KLFK 591 (1019)
Q Consensus 534 iwd~~~~~~~~~~~--~l~gh~~~~~V~~v~fspdg~-~Lasgs~DG~I~IWDl~t~-------------------~~l~ 591 (1019)
+||+.++....... .+.+|. ..|.+++|+|+++ +|++|+.||.|++||+.++ +.+.
T Consensus 238 i~d~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (357)
T 3i2n_A 238 VFDMRTQHPTKGFASVSEKAHK--STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQ 315 (357)
T ss_dssp EEEEEEEETTTEEEEEEEECCS--SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEE
T ss_pred EEeCcCCCcccceeeeccCCCc--CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceee
Confidence 99998764433222 334676 7799999999999 8999999999999999754 4677
Q ss_pred eeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 592 KWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 592 ~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
.+.+|.+.|.+++|+|++..++++++.||.|++|.
T Consensus 316 ~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 316 NVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp EEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred ccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEE
Confidence 78899999999999999954444899999997773
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.5e-30 Score=297.34 Aligned_cols=307 Identities=11% Similarity=0.133 Sum_probs=249.6
Q ss_pred CCCCCCC-eeeeCCCCCceeeecC----CCCCCcc---CCccceeeec------cCCCCeEEEEEcCCCCcEEEEeeCCC
Q psy307 293 PTDYQGR-SFLHPPHDVGTNLRSD----TPPDRCF---LPKTQVHTWE------GHTKGISAIRWFPKSAHLLLSCSMDC 358 (1019)
Q Consensus 293 ~~~~~gr-~~~~~~~D~~v~lw~~----~~~~~~~---lp~~~i~~l~------gH~~~V~~i~fspd~g~lLaSgs~Dg 358 (1019)
.++++|+ .+++++.|+.|++|+. ....... ......+.+. +|.+.|++++|+|+ +.+|++|+.||
T Consensus 52 ~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg 130 (425)
T 1r5m_A 52 TWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD-GNSIVTGVENG 130 (425)
T ss_dssp EECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT-SSEEEEEETTS
T ss_pred EECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC-CCEEEEEeCCC
Confidence 3678899 9999999999999988 4322100 0111122222 37889999999995 88999999999
Q ss_pred eEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcccccc
Q psy307 359 RVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQA 438 (1019)
Q Consensus 359 ~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~ 438 (1019)
.|++||. .+..+..+.+|...|.+++|+|++ .+|++++.||.|++||+ ..+..+..+..|...
T Consensus 131 ~i~i~~~--~~~~~~~~~~~~~~v~~~~~~~~~--------------~~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~~~ 193 (425)
T 1r5m_A 131 ELRLWNK--TGALLNVLNFHRAPIVSVKWNKDG--------------THIISMDVENVTILWNV-ISGTVMQHFELKETG 193 (425)
T ss_dssp CEEEEET--TSCEEEEECCCCSCEEEEEECTTS--------------SEEEEEETTCCEEEEET-TTTEEEEEECCC---
T ss_pred eEEEEeC--CCCeeeeccCCCccEEEEEECCCC--------------CEEEEEecCCeEEEEEC-CCCcEEEEeeccccC
Confidence 9999994 556788899999999999999998 68999999999999999 567778888888777
Q ss_pred ---------------EeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEec-CCceEEEEEecCCCeeeeccCCC---
Q psy307 439 ---------------VRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTS-RKVAYCVKFHPDEDKQHLDIPVD--- 499 (1019)
Q Consensus 439 ---------------V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~-~~~v~~v~~~p~~~~~~~~~~~~--- 499 (1019)
+.+++|++++ .+++++.||.|++||+++++.+..+.. ...+.+++|+|++..++......
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 272 (425)
T 1r5m_A 194 GSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLR 272 (425)
T ss_dssp ------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred ccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 9999999975 689999999999999999988888764 46789999999987655522211
Q ss_pred --------ceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEE
Q psy307 500 --------MKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLI 571 (1019)
Q Consensus 500 --------~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~La 571 (1019)
.......+...+.+++|+|++ ++++++.||.|++||+.++ .....+..|. ..+.+++|+|+|++|+
T Consensus 273 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~--~~i~~~~~s~~~~~l~ 346 (425)
T 1r5m_A 273 IWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN---TLLALSIVDG--VPIFAGRISQDGQKYA 346 (425)
T ss_dssp EECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT---EEEEEEECTT--CCEEEEEECTTSSEEE
T ss_pred EEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC---cEeEecccCC--ccEEEEEEcCCCCEEE
Confidence 122334467789999999999 9999999999999999876 3456667776 6799999999999999
Q ss_pred EEeCCCeEEEEeCCCCc--------------------eeeeeeccCC--CEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 572 SGDADGKCYIWDWKTTK--------------------LFKKWKAHDG--VCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 572 sgs~DG~I~IWDl~t~~--------------------~l~~l~~h~~--~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+|+.||.|++||+.+++ ++..+.+|.. .|.+++|+|++ .+|++++.||.|++|
T Consensus 347 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw 421 (425)
T 1r5m_A 347 VAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG-NKISVAYSLQEGSVV 421 (425)
T ss_dssp EEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTS-SEEEEEESSSCCEEE
T ss_pred EEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC-ceEEEEecCceEEEE
Confidence 99999999999999988 8899999976 99999999998 599999999999776
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-29 Score=284.57 Aligned_cols=276 Identities=20% Similarity=0.305 Sum_probs=231.3
Q ss_pred CCCC-CCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 294 TDYQ-GRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 294 ~~~~-gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
++++ ++.+++++.|+.|++|+...... ....+..++++|...|++++|+|+ +.+|++|+.||.|++|+. ......
T Consensus 46 ~sp~~~~~l~S~s~D~~i~vWd~~~~~~--~~~~~~~~l~~h~~~V~~~~~s~d-g~~l~s~~~d~~i~~~~~-~~~~~~ 121 (340)
T 4aow_A 46 TTPQFPDMILSASRDKTIIMWKLTRDET--NYGIPQRALRGHSHFVSDVVISSD-GQFALSGSWDGTLRLWDL-TTGTTT 121 (340)
T ss_dssp ECTTCTTEEEEEETTSCEEEEEECCSSS--CSEEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEET-TTTEEE
T ss_pred EeCCCCCEEEEEcCCCeEEEEECCCCCc--ccceeeEEEeCCCCCEEEEEECCC-CCEEEEEcccccceEEee-ccccee
Confidence 4555 68999999999999999765332 234567889999999999999996 889999999999999999 455666
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCC--CE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTG--TN 450 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg--~~ 450 (1019)
.....+...+..+.+++++ .+|++|+.|+.+++||+...........+|...|.+++|++++ ..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~--------------~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 187 (340)
T 4aow_A 122 RRFVGHTKDVLSVAFSSDN--------------RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 187 (340)
T ss_dssp EEEECCSSCEEEEEECTTS--------------SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred eeecCCCCceeEEEEeecC--------------ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence 7777888889999998888 6899999999999999977777777788999999999999875 46
Q ss_pred EEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC
Q psy307 451 FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN 530 (1019)
Q Consensus 451 l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg 530 (1019)
+++++.|++|++||+++++++..+.. +...|.+++|+|++++|++|+.||
T Consensus 188 ~~s~~~d~~i~i~d~~~~~~~~~~~~------------------------------h~~~v~~~~~s~~~~~l~s~s~Dg 237 (340)
T 4aow_A 188 IVSCGWDKLVKVWNLANCKLKTNHIG------------------------------HTGYLNTVTVSPDGSLCASGGKDG 237 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECC------------------------------CSSCEEEEEECTTSSEEEEEETTC
T ss_pred EEEEcCCCEEEEEECCCCceeeEecC------------------------------CCCcEEEEEECCCCCEEEEEeCCC
Confidence 88999999999999999887766643 234577788899999999999999
Q ss_pred eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee---------eccCCCEE
Q psy307 531 KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKW---------KAHDGVCI 601 (1019)
Q Consensus 531 ~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l---------~~h~~~V~ 601 (1019)
.|++||+.+.. .+..+.++ ..+.++.|+|++.++ +++.||.|+|||++++..+..+ .+|...|+
T Consensus 238 ~i~iwd~~~~~---~~~~~~~~---~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~ 310 (340)
T 4aow_A 238 QAMLWDLNEGK---HLYTLDGG---DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCT 310 (340)
T ss_dssp EEEEEETTTTE---EEEEEECS---SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEE
T ss_pred eEEEEEeccCc---eeeeecCC---ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEE
Confidence 99999998763 34555554 569999999998755 5567999999999988776654 36888999
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 602 STLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 602 sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+++|+|++ .+|++|+.||+|++|
T Consensus 311 ~l~~s~dg-~~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 311 SLAWSADG-QTLFAGYTDNLVRVW 333 (340)
T ss_dssp EEEECTTS-SEEEEEETTSCEEEE
T ss_pred EEEECCCC-CEEEEEeCCCEEEEE
Confidence 99999998 699999999999776
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-29 Score=287.19 Aligned_cols=272 Identities=16% Similarity=0.230 Sum_probs=233.1
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.++++|+.+++++.|+.|++|+... .+.+.++.+|.+.|++++|+|+ +.+|++++.||.|++||+ ..++++
T Consensus 39 ~~s~~~~~l~~~~~dg~i~vwd~~~-------~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~-~~~~~~ 109 (369)
T 3zwl_B 39 KYNKEGDLLFSCSKDSSASVWYSLN-------GERLGTLDGHTGTIWSIDVDCF-TKYCVTGSADYSIKLWDV-SNGQCV 109 (369)
T ss_dssp EECTTSCEEEEEESSSCEEEEETTT-------CCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEET-TTCCEE
T ss_pred EEcCCCCEEEEEeCCCEEEEEeCCC-------chhhhhhhhcCCcEEEEEEcCC-CCEEEEEeCCCeEEEEEC-CCCcEE
Confidence 3577899999999999999998653 3568899999999999999995 889999999999999999 455666
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC-----CcEEEEEccCCC----------eEEEEEccccc
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD-----CRVKLWEVYKEH----------RCVRTYYGHRQ 437 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D-----g~I~IWDl~~~~----------~~~~~l~~H~~ 437 (1019)
..+. |...|.+++|+|++ .+|++++.+ |.|++||+.... .....+..|.+
T Consensus 110 ~~~~-~~~~v~~~~~~~~~--------------~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (369)
T 3zwl_B 110 ATWK-SPVPVKRVEFSPCG--------------NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG 174 (369)
T ss_dssp EEEE-CSSCEEEEEECTTS--------------SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred EEee-cCCCeEEEEEccCC--------------CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence 6666 88899999999998 688999998 999999996543 23445566766
Q ss_pred --cEeEEEEecCCCEEEEEEcCCeEEEEECCC-CceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEE
Q psy307 438 --AVRDICFNNTGTNFISAGYDRYLKLWDTES-GECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAV 514 (1019)
Q Consensus 438 --~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t-~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v 514 (1019)
.+.+++|+|+++.|++++.||.|++||+++ +..+..+.. +...+.++
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------------------~~~~v~~~ 224 (369)
T 3zwl_B 175 LDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL------------------------------HEKSISDM 224 (369)
T ss_dssp CCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC------------------------------CSSCEEEE
T ss_pred ccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec------------------------------CCCceeEE
Confidence 999999999999999999999999999998 565555543 23457778
Q ss_pred EEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC--------------eEE
Q psy307 515 TSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG--------------KCY 580 (1019)
Q Consensus 515 ~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG--------------~I~ 580 (1019)
+|+|++++|++++.||.|++||+.++. ....+. +. ..+.+++|+|+++++++++.++ .++
T Consensus 225 ~~~~~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~-~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 298 (369)
T 3zwl_B 225 QFSPDLTYFITSSRDTNSFLVDVSTLQ---VLKKYE-TD--CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEAR 298 (369)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCC---EEEEEE-CS--SCEEEEEECSSSSEEEEEECCC-------------CEEE
T ss_pred EECCCCCEEEEecCCceEEEEECCCCc---eeeeec-CC--CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeE
Confidence 888999999999999999999998763 334444 22 6799999999999999999988 899
Q ss_pred EEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 581 IWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 581 IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+||+.+++.+..+.+|.+.|.+++|+|++ .+|++++.||.|++|
T Consensus 299 ~~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~v~iw 342 (369)
T 3zwl_B 299 FYHKIFEEEIGRVQGHFGPLNTVAISPQG-TSYASGGEDGFIRLH 342 (369)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEE
T ss_pred EEecCCCcchhheecccCcEEEEEECCCC-CEEEEEcCCCeEEEE
Confidence 99999999999999999999999999988 699999999999776
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=9.1e-31 Score=305.83 Aligned_cols=295 Identities=12% Similarity=0.121 Sum_probs=233.2
Q ss_pred CCC-CCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecC--CCcE
Q psy307 294 TDY-QGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVY--KERR 370 (1019)
Q Consensus 294 ~~~-~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~--~~~~ 370 (1019)
+.+ +|+.+++++.|+.|++|+........ ..+....+ +|.+.|++++|+|+ +.+|++|+.||.|++||+. ..++
T Consensus 71 ~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~~~~-~h~~~v~~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~ 147 (437)
T 3gre_A 71 VSPGETPYLITGSDQGVIKIWNLKEIIVGE-VYSSSLTY-DCSSTVTQITMIPN-FDAFAVSSKDGQIIVLKVNHYQQES 147 (437)
T ss_dssp EECSSSCEEEEEETTSEEEEEEHHHHHTTC-CCSCSEEE-ECSSCEEEEEECTT-SSEEEEEETTSEEEEEEEEEEEETT
T ss_pred ECCCCCCEEEEecCCceEEEeECcccccCc-ccceeeec-cCCCCEEEEEEeCC-CCEEEEEeCCCEEEEEEeccccCCc
Confidence 456 89999999999999999875411110 11223333 59999999999995 8899999999999999984 2445
Q ss_pred EEEEecccCccEeEEEEcCC-CCceeEEEee-cCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcc--ccccEeEEEEec
Q psy307 371 CVRTYYGHRQAVRDICFNNT-GTNFISAIRW-FPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG--HRQAVRDICFNN 446 (1019)
Q Consensus 371 ~~~~~~gh~~~V~~i~fspd-g~~~vs~i~~-~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~--H~~~V~sl~fsp 446 (1019)
+.....+| .|..+.|+++ ....+.++.+ ...++.+|++|+.||.|++||+ ...+++..+.+ |.+.|.+++|+|
T Consensus 148 ~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~h~~~v~~~~~s~ 224 (437)
T 3gre_A 148 EVKFLNCE--CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDI-RTLERLQIIENSPRHGAVSSICIDE 224 (437)
T ss_dssp EEEEEEEE--EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEET-TTCCEEEEEECCGGGCCEEEEEECT
T ss_pred eeeccccc--eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCeeeEEEccCCCCCceEEEEECC
Confidence 56666666 7888888874 2233444443 2334579999999999999999 56677888877 899999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceEEEEe--cCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEE
Q psy307 447 TGTNFISAGYDRYLKLWDTESGECISRFT--SRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLA 524 (1019)
Q Consensus 447 dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~--~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~La 524 (1019)
++++|++|+.||+|++||+++++++..+. +...+.+++|+|. ++|++.+|+
T Consensus 225 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~---------------------------~s~~~~~l~ 277 (437)
T 3gre_A 225 ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF---------------------------YGKNSVIVV 277 (437)
T ss_dssp TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTT---------------------------TCTTEEEEE
T ss_pred CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccc---------------------------cCCCccEEE
Confidence 99999999999999999999999988774 3445666666553 356788999
Q ss_pred EEecCCeEEEEEccCcccccceeEEeccc------------------------cccceEEEEEcCCCCEEEEEeCCCeEE
Q psy307 525 CQSMDNKILIFSALNRFKLNRKKTFEGHM------------------------VAGYACSLDFSPDMSYLISGDADGKCY 580 (1019)
Q Consensus 525 sgs~Dg~I~iwd~~~~~~~~~~~~l~gh~------------------------~~~~V~~v~fspdg~~Lasgs~DG~I~ 580 (1019)
+|+.||.|++||+.++. ....+.+|. ....|.+++|+ ++++|++|+.||.|+
T Consensus 278 s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~ 353 (437)
T 3gre_A 278 GGSSKTFLTIWNFVKGH---CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIV 353 (437)
T ss_dssp EESTTEEEEEEETTTTE---EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEE
T ss_pred EEcCCCcEEEEEcCCCc---EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEE
Confidence 99999999999998763 234444332 23568899999 789999999999999
Q ss_pred EEeCCCCceeeeeec-------------------------------------cCCCEEEEEEcCC-CCcEEEEEeCCCcE
Q psy307 581 IWDWKTTKLFKKWKA-------------------------------------HDGVCISTLWHPH-EPSKVVTAGWDAAT 622 (1019)
Q Consensus 581 IWDl~t~~~l~~l~~-------------------------------------h~~~V~sl~~sp~-~~~~l~s~s~Dg~I 622 (1019)
+||+.+++.+..+.+ |...|++++|+++ +..+|++|+.||.|
T Consensus 354 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I 433 (437)
T 3gre_A 354 MFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLI 433 (437)
T ss_dssp EEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCE
T ss_pred EEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceE
Confidence 999999988777765 8889999999998 33699999999999
Q ss_pred EEE
Q psy307 623 AKV 625 (1019)
Q Consensus 623 ~iw 625 (1019)
++|
T Consensus 434 ~iw 436 (437)
T 3gre_A 434 GIF 436 (437)
T ss_dssp EEE
T ss_pred EEe
Confidence 887
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-30 Score=290.33 Aligned_cols=262 Identities=19% Similarity=0.311 Sum_probs=218.0
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc---EEEEEecccCccEeEEEEcC--CCCceeEEEeecC
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER---RCVRTYYGHRQAVRDICFNN--TGTNFISAIRWFP 402 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~---~~~~~~~gh~~~V~~i~fsp--dg~~~vs~i~~~p 402 (1019)
...+.||.+.|++++|+|+ +.+|++|+.||.|+|||+.... .....+.+|...|.+++|+| ++
T Consensus 4 ~~~~~gH~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~----------- 71 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFY-GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYG----------- 71 (351)
T ss_dssp CCEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGC-----------
T ss_pred cccCcccccceeEEEEcCC-CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCC-----------
Confidence 3467899999999999995 8899999999999999995433 56778899999999999998 46
Q ss_pred CCCcEEEEEeCCCcEEEEEccCCC--------eEEEEEccccccEeEEEEecC--CCEEEEEEcCCeEEEEECCCCceEE
Q psy307 403 KSAHLLLSCSMDCRVKLWEVYKEH--------RCVRTYYGHRQAVRDICFNNT--GTNFISAGYDRYLKLWDTESGECIS 472 (1019)
Q Consensus 403 ~~~~~L~sgs~Dg~I~IWDl~~~~--------~~~~~l~~H~~~V~sl~fspd--g~~l~S~s~Dg~I~lWDl~t~~~i~ 472 (1019)
.+|++|+.||.|++||+.... ..+..+.+|...|.+++|+|+ +.+|++++.||.|++||+++++.+.
T Consensus 72 ---~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 148 (351)
T 3f3f_A 72 ---RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLR 148 (351)
T ss_dssp ---SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTT
T ss_pred ---CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhc
Confidence 699999999999999996543 678889999999999999999 9999999999999999999887654
Q ss_pred EEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC---CCEEEEEecCCeEEEEEccCcccccceeEE
Q psy307 473 RFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN---NKWLACQSMDNKILIFSALNRFKLNRKKTF 549 (1019)
Q Consensus 473 ~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd---g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l 549 (1019)
.+.....+..+.+ ....+...+.+++|+|+ +.++++++.++.+.+|+...+ .......+
T Consensus 149 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~ 210 (351)
T 3f3f_A 149 SWTLTSEMKVLSI-----------------PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG-KLHVAAKL 210 (351)
T ss_dssp CCEEEEEEESCSC-----------------CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS-CEEEEEEC
T ss_pred ccccccccccccc-----------------ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC-ceeeeeec
Confidence 4332211111111 12235567889999997 999999999999987776654 33345667
Q ss_pred eccccccceEEEEEcCCC----CEEEEEeCCCeEEEEeCCCC--------------------------------------
Q psy307 550 EGHMVAGYACSLDFSPDM----SYLISGDADGKCYIWDWKTT-------------------------------------- 587 (1019)
Q Consensus 550 ~gh~~~~~V~~v~fspdg----~~Lasgs~DG~I~IWDl~t~-------------------------------------- 587 (1019)
.+|. ..|.+++|+|++ ++|++|+.||.|++||+.++
T Consensus 211 ~~h~--~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (351)
T 3f3f_A 211 PGHK--SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKA 288 (351)
T ss_dssp CCCC--SCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------------
T ss_pred CCCC--cceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceee
Confidence 7776 779999999998 89999999999999999875
Q ss_pred --------ceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 588 --------KLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 588 --------~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+.+..+.+|.+.|++++|+|++ .+|++++.||.|++|
T Consensus 289 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~v~iw 333 (351)
T 3f3f_A 289 ELQSNLQVELLSEHDDHNGEVWSVSWNLTG-TILSSAGDDGKVRLW 333 (351)
T ss_dssp --CCSEEEEEEEEECTTSSCEEEEEECSSS-CCEEEEETTSCEEEE
T ss_pred eecccccccEEEEEecccccEEEEEEcCCC-CEEEEecCCCcEEEE
Confidence 6677888999999999999998 699999999999776
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.98 E-value=5.7e-30 Score=290.88 Aligned_cols=294 Identities=13% Similarity=0.150 Sum_probs=227.8
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-EEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-RCV 372 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~~~ 372 (1019)
++++|+.+++++.|+.|++|+..... .+.+..+.+|.+.|++++|+|+ +.+|++|+.||.|++||+.... ...
T Consensus 16 ~s~~~~~l~~~~~d~~v~i~~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~ 89 (372)
T 1k8k_C 16 WNKDRTQIAICPNNHEVHIYEKSGNK-----WVQVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPT 89 (372)
T ss_dssp ECTTSSEEEEECSSSEEEEEEEETTE-----EEEEEEEECCSSCEEEEEEETT-TTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCCCc-----EEeeeeecCCCCcccEEEEeCC-CCEEEEEcCCCeEEEEECCCCeeeee
Confidence 56789999999999999999875321 1268889999999999999995 8899999999999999995433 223
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe---EEEEEccccccEeEEEEecCCC
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR---CVRTYYGHRQAVRDICFNNTGT 449 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~---~~~~l~~H~~~V~sl~fspdg~ 449 (1019)
..+.+|...|.+++|+|++ .+|++|+.||.|++||+..... ......+|...|.+++|+|+++
T Consensus 90 ~~~~~~~~~v~~~~~~~~~--------------~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 155 (372)
T 1k8k_C 90 LVILRINRAARCVRWAPNE--------------KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV 155 (372)
T ss_dssp EECCCCSSCEEEEEECTTS--------------SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS
T ss_pred EEeecCCCceeEEEECCCC--------------CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC
Confidence 3457899999999999998 6899999999999999966542 3344477999999999999999
Q ss_pred EEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC
Q psy307 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD 529 (1019)
Q Consensus 450 ~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D 529 (1019)
+|++++.||.|++||++........... .|... ............+...+.+++|+|++++|++++.|
T Consensus 156 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~------~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 223 (372)
T 1k8k_C 156 LLAAGSCDFKCRIFSAYIKEVEERPAPT------PWGSK------MPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD 223 (372)
T ss_dssp EEEEEETTSCEEEEECCCTTTSCCCCCB------TTBSC------CCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred EEEEEcCCCCEEEEEccccccccccccc------ccccc------cchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC
Confidence 9999999999999997532210000000 00000 00000111122455678889999999999999999
Q ss_pred CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCC--Cce------------------
Q psy307 530 NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKT--TKL------------------ 589 (1019)
Q Consensus 530 g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t--~~~------------------ 589 (1019)
|.|++||+.++ ..+..+.+|. ..+.+++|+|++.+|++| .||.|++||+.+ ++.
T Consensus 224 ~~i~i~d~~~~---~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (372)
T 1k8k_C 224 STVCLADADKK---MAVATLASET--LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLT 297 (372)
T ss_dssp TEEEEEEGGGT---TEEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------C
T ss_pred CEEEEEECCCC---ceeEEEccCC--CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcc
Confidence 99999999877 3456777776 679999999999999888 899999999987 421
Q ss_pred --------------e------eee-eccCCCEEEEEEcCCCC---cEEEEEeCCCcEEEE
Q psy307 590 --------------F------KKW-KAHDGVCISTLWHPHEP---SKVVTAGWDAATAKV 625 (1019)
Q Consensus 590 --------------l------~~l-~~h~~~V~sl~~sp~~~---~~l~s~s~Dg~I~iw 625 (1019)
. ..+ .+|.+.|++++|++.++ .+|+|||.||.|++|
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W 357 (372)
T 1k8k_C 298 ARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 357 (372)
T ss_dssp HHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEE
T ss_pred hhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEE
Confidence 0 333 48999999999886654 699999999999776
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-31 Score=301.07 Aligned_cols=323 Identities=12% Similarity=0.167 Sum_probs=243.0
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-----EEEEEecccCccEeEEEEcCC----CCceeE
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-----RCVRTYYGHRQAVRDICFNNT----GTNFIS 396 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-----~~~~~~~gh~~~V~~i~fspd----g~~~vs 396 (1019)
....++.+|.+.|++++|+| .+|++|+.||.|+|||+.... .++..+.+|...|.+++|+|+ +..
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~--- 80 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFE--- 80 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEE---
T ss_pred hhhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcc---
Confidence 45678899999999999988 599999999999999995543 257788899999999999987 400
Q ss_pred EEeecCCCCcEEEEEeCCCcEEEEEccCCCe----EEEEEccc-----cccEeEEEEe----cCCCE-EEEEEcCCeEEE
Q psy307 397 AIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR----CVRTYYGH-----RQAVRDICFN----NTGTN-FISAGYDRYLKL 462 (1019)
Q Consensus 397 ~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~----~~~~l~~H-----~~~V~sl~fs----pdg~~-l~S~s~Dg~I~l 462 (1019)
..+|++++.||.|++||+..... ....+..| ...|.+++|+ |+++. |++++.||.|++
T Consensus 81 --------~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i 152 (397)
T 1sq9_A 81 --------LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI 152 (397)
T ss_dssp --------EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred --------ccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEE
Confidence 04899999999999999954432 27788888 5999999999 99999 999999999999
Q ss_pred EECCC------CceEE-----EEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCe
Q psy307 463 WDTES------GECIS-----RFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNK 531 (1019)
Q Consensus 463 WDl~t------~~~i~-----~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~ 531 (1019)
||+++ ++.+. .+... ......+...+.+++|+|++ +|++++.||.
T Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~ 208 (397)
T 1sq9_A 153 WKFHPFADESNSLTLNWSPTLELQGT-----------------------VESPMTPSQFATSVDISERG-LIATGFNNGT 208 (397)
T ss_dssp EEEESSSSHHHHTTTCCCCEEEEEEE-----------------------ECCSSSSCCCCCEEEECTTS-EEEEECTTSE
T ss_pred EeCCccccccccceeeccCcceeeee-----------------------eccccCCCCCceEEEECCCc-eEEEEeCCCc
Confidence 99987 44322 11100 00113456778999999999 9999999999
Q ss_pred EEEEEccCcccccceeEEec---c---ccccceEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeeeec-------
Q psy307 532 ILIFSALNRFKLNRKKTFEG---H---MVAGYACSLDFSPDMSYLISGDAD---GKCYIWDWKTTKLFKKWKA------- 595 (1019)
Q Consensus 532 I~iwd~~~~~~~~~~~~l~g---h---~~~~~V~~v~fspdg~~Lasgs~D---G~I~IWDl~t~~~l~~l~~------- 595 (1019)
|++||+.+. .....+.+ | . ..+.+++|+|++++|++|+.| |.|++||+.+++.+..+.+
T Consensus 209 i~i~d~~~~---~~~~~~~~~~~h~~~~--~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~ 283 (397)
T 1sq9_A 209 VQISELSTL---RPLYNFESQHSMINNS--NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQA 283 (397)
T ss_dssp EEEEETTTT---EEEEEEECCC---CCC--CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC------
T ss_pred EEEEECCCC---ceeEEEeccccccccC--CccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccc
Confidence 999999876 34466666 6 5 679999999999999999999 9999999999999999998
Q ss_pred ------cCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCC
Q psy307 596 ------HDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDS 669 (1019)
Q Consensus 596 ------h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~ 669 (1019)
|...|.+++|+|++ .+|++++.||.|++| +....+............ .. .
T Consensus 284 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~----------~~------------~ 339 (397)
T 1sq9_A 284 SLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFW-DVKTKERITTLNMHCDDI----------EI------------E 339 (397)
T ss_dssp --CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEE-ETTTTEEEEEEECCGGGC----------SS------------G
T ss_pred cccccccCCcEEEEEECCCC-CEEEEEeCCCeEEEE-EcCCCceeEEEecccCcc----------cc------------h
Confidence 99999999999998 699999999999765 443322221111000000 00 0
Q ss_pred ceeEEEeecCCCceEEeccccccccCCceEEEEecCCc--------cHHHHHhhcCCCchhhHHH
Q psy307 670 EQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASK--------TADDILSKLSDKNASLEEK 726 (1019)
Q Consensus 670 e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~--------~a~~Ilt~~~d~~i~lw~~ 726 (1019)
+. ...+. ......|.++|.+++|+|++ +.+.|+++..|+.|++|+.
T Consensus 340 ~~----~~~g~-------~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 340 ED----ILAVD-------EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp GG----CCCBC-------TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred hh----hhccc-------cccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 00 00000 00112468899999999996 2246999999999999973
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=311.07 Aligned_cols=351 Identities=9% Similarity=0.072 Sum_probs=243.3
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeee-ccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC---C
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTW-EGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK---E 368 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l-~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~---~ 368 (1019)
.+.+.|+.++++. .|+.. .+.+.++ .+|.+.|++++|+|.++.+|++|+.||+|+|||+.. .
T Consensus 34 ~f~~~~~~~~~~~------~w~~~--------g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~ 99 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR--------GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG 99 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC--------CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT
T ss_pred hcCCccccccccc------ccccc--------ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC
Confidence 3566677666654 36432 4677888 999999999999993388999999999999999843 2
Q ss_pred c--EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEcc--CCCeEEEEEcc----------
Q psy307 369 R--RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVY--KEHRCVRTYYG---------- 434 (1019)
Q Consensus 369 ~--~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~--~~~~~~~~l~~---------- 434 (1019)
. .+...+ +|...|.+++|+|++ .+|++|+.||.|++||+. ..+.....+.+
T Consensus 100 ~~~~~~~~~-~h~~~v~~~~~~~~~--------------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~ 164 (437)
T 3gre_A 100 EVYSSSLTY-DCSSTVTQITMIPNF--------------DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKN 164 (437)
T ss_dssp CCCSCSEEE-ECSSCEEEEEECTTS--------------SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGG
T ss_pred cccceeeec-cCCCCEEEEEEeCCC--------------CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccC
Confidence 1 122233 599999999999988 699999999999999994 22333332222
Q ss_pred --ccccEeEEE--EecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCc
Q psy307 435 --HRQAVRDIC--FNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHS 510 (1019)
Q Consensus 435 --H~~~V~sl~--fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~ 510 (1019)
+...+.++. +++++.+|++++.|++|++||+++++++..+... .+...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----------------------------~h~~~ 216 (437)
T 3gre_A 165 FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS----------------------------PRHGA 216 (437)
T ss_dssp GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC----------------------------GGGCC
T ss_pred cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC----------------------------CCCCc
Confidence 455677776 5578999999999999999999999888777641 12345
Q ss_pred ccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEe-ccccccceEEEEE----cCCCCEEEEEeCCCeEEEEeCC
Q psy307 511 MPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFE-GHMVAGYACSLDF----SPDMSYLISGDADGKCYIWDWK 585 (1019)
Q Consensus 511 i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~-gh~~~~~V~~v~f----spdg~~Lasgs~DG~I~IWDl~ 585 (1019)
|.+++|+|++++|++|+.||.|++||++.+ .....+. +|. ..|.+++| +|++.+|++|+.||.|+|||+.
T Consensus 217 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~--~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 217 VSSICIDEECCVLILGTTRGIIDIWDIRFN---VLIRSWSFGDH--APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEEBCTTC--EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred eEEEEECCCCCEEEEEcCCCeEEEEEcCCc---cEEEEEecCCC--CceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence 777888899999999999999999999876 3345554 454 56999955 4578899999999999999999
Q ss_pred CCceeeeeecc--------------------------CCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccc
Q psy307 586 TTKLFKKWKAH--------------------------DGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEK 639 (1019)
Q Consensus 586 t~~~l~~l~~h--------------------------~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~ 639 (1019)
+++.+..+.+| ...|.+++|+ ++ .+|++|+.||.|++| +....+......+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d~~i~~w-d~~~~~~~~~~~~ 368 (437)
T 3gre_A 292 KGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEATSSIVMF-SLNELSSSKAVIS 368 (437)
T ss_dssp TTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGGTEEEEE-ETTCGGGCEEEEC
T ss_pred CCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEecCCCCeEEEE-ECCCcccceEEec
Confidence 99988777644 4557888888 45 699999999999665 4443332222222
Q ss_pred cCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCC
Q psy307 640 QVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDK 719 (1019)
Q Consensus 640 ~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~ 719 (1019)
+......+... .+.....+.+...+.... ........|.+.|++++|+|+.....|+++..||
T Consensus 369 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG 431 (437)
T 3gre_A 369 PSRFSDVFIPT--------------QVTANLTMLLRKMKRTST---HSVDDSLYHHDIINSISTCEVDETPLLVACDNSG 431 (437)
T ss_dssp C--CCCEEEEE--------------EEETTEEEEEEECC----------------CCCEEEEEEEESSSSEEEEEEETTS
T ss_pred ccccCceEEEE--------------EeecceEEEEEecccccc---cccCcccccccceeeEeeeccCCceEEEEEcCCc
Confidence 21111110000 001111111111000000 0001112378999999999994447899999999
Q ss_pred chhhHH
Q psy307 720 NASLEE 725 (1019)
Q Consensus 720 ~i~lw~ 725 (1019)
.|+||+
T Consensus 432 ~I~iw~ 437 (437)
T 3gre_A 432 LIGIFQ 437 (437)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 999994
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=278.47 Aligned_cols=272 Identities=17% Similarity=0.234 Sum_probs=231.0
Q ss_pred CccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCC
Q psy307 324 PKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPK 403 (1019)
Q Consensus 324 p~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~ 403 (1019)
+.+.++++.+|.+.|++++| |+ +.+|++|+.||.|++||+ ........+..|...|.+++|+|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~-~~~l~s~~~dg~v~vw~~-~~~~~~~~~~~~~~~v~~~~~~~~~------------ 71 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VD-DSKVASVSRDGTVRLWSK-DDQWLGTVVYTGQGFLNSVCYDSEK------------ 71 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EE-TTEEEEEETTSEEEEEEE-SSSEEEEEEEECSSCEEEEEEETTT------------
T ss_pred cHHHHHHhhCCCCCcEEEEe-cC-CCEEEEEEcCCcEEEEEC-CCCEEEEEeecCCccEEEEEECCCC------------
Confidence 45778899999999999999 74 788999999999999999 5667788889999999999999998
Q ss_pred CCcEEEEEeCCCcEEEEEccCC--CeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEec-CCce
Q psy307 404 SAHLLLSCSMDCRVKLWEVYKE--HRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTS-RKVA 480 (1019)
Q Consensus 404 ~~~~L~sgs~Dg~I~IWDl~~~--~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~-~~~v 480 (1019)
.+|++|+.||.|++|++... ......+.+|...|.+++| +++.+++++.|+.|++|| .++.+..+.. ...+
T Consensus 72 --~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v 145 (313)
T 3odt_A 72 --ELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASV 145 (313)
T ss_dssp --TEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCE
T ss_pred --CEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCce
Confidence 79999999999999999654 3667888999999999999 578999999999999999 6666666664 4678
Q ss_pred EEEEEec-CCCeeee----------ccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEE
Q psy307 481 YCVKFHP-DEDKQHL----------DIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTF 549 (1019)
Q Consensus 481 ~~v~~~p-~~~~~~~----------~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l 549 (1019)
.++.+.| ++...+. +...........+...+.+++++|++. +++++.||.|++||+.++ .....+
T Consensus 146 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~---~~~~~~ 221 (313)
T 3odt_A 146 WDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG---DVLRTY 221 (313)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC---CEEEEE
T ss_pred eEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch---hhhhhh
Confidence 8999988 5554443 211222223334778899999999998 999999999999999876 445677
Q ss_pred eccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 550 EGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 550 ~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.+|. +.|.+++|+|+| .|++|+.||.|++||+.+++.+..+..|...|.+++|+|++. +++++.||.|++|
T Consensus 222 ~~~~--~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~iw 292 (313)
T 3odt_A 222 EGHE--SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD--IIVGSSDNLVRIF 292 (313)
T ss_dssp ECCS--SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC--EEEEETTSCEEEE
T ss_pred hcCC--ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC--EEEEeCCCcEEEE
Confidence 7787 779999999999 588999999999999999999999999999999999999984 7789999999776
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-31 Score=317.34 Aligned_cols=317 Identities=10% Similarity=0.053 Sum_probs=215.1
Q ss_pred EEEeeCCCeEEEEecCCCcE---EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC-
Q psy307 351 LLSCSMDCRVKLWEVYKERR---CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH- 426 (1019)
Q Consensus 351 LaSgs~Dg~I~IWdl~~~~~---~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~- 426 (1019)
|++|+.|++|+|||+..... ...++.+|.+.|.+++|+|++. +.+ ++.+|++|+.||+|+|||+....
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~-------~~~-~~~~LAs~s~DgtvrlWd~~~~~~ 247 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCH-------APH-LVGCLSFVSQEGTINFLEIIDNAT 247 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCC-------CSS-SSCEEEEEETTSCEEEEECCCCSS
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCC-------CCC-CCceEEEEecCCeEEEEEcCCCcc
Confidence 44466889999999854331 1244677888999999999731 111 23699999999999999995442
Q ss_pred ---------eEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCce-EEEEecCCceEEEEEecCCCeeeecc
Q psy307 427 ---------RCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGEC-ISRFTSRKVAYCVKFHPDEDKQHLDI 496 (1019)
Q Consensus 427 ---------~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~-i~~~~~~~~v~~v~~~p~~~~~~~~~ 496 (1019)
.+...+.+|...|++++|++++ .|++|+.||+|++||++++.. ...+.
T Consensus 248 ~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~--------------------- 305 (524)
T 2j04_B 248 DVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQ--------------------- 305 (524)
T ss_dssp SSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEE---------------------
T ss_pred ccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEee---------------------
Confidence 1234678999999999999864 899999999999999987532 22222
Q ss_pred CCCceeeeCCCCCcccEE--EEcCCC-CEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEE
Q psy307 497 PVDMKYIADPTMHSMPAV--TSSPNN-KWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISG 573 (1019)
Q Consensus 497 ~~~~~~i~~~~~~~i~~v--~~spdg-~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasg 573 (1019)
.|...|.++ +++|+| .+|++++.|++|+|||+++.. ....+.+|...+.|.+++|+|+++.++++
T Consensus 306 ---------~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~---~~~~~~~~~~~~~v~~v~fsp~~~~l~s~ 373 (524)
T 2j04_B 306 ---------VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA---TTKTTVSRFRGSNLVPVVYCPQIYSYIYS 373 (524)
T ss_dssp ---------CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH---HHCEEEEECSCCSCCCEEEETTTTEEEEE
T ss_pred ---------cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC---cccccccccccCcccceEeCCCcCeEEEe
Confidence 234556666 467787 899999999999999998763 33456666533457889999999999999
Q ss_pred eCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeeccccccc
Q psy307 574 DADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTL 653 (1019)
Q Consensus 574 s~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~L 653 (1019)
+.|++|++||++++.++.++.+|.+.|++++|+|++ .+|++||.||+|++| +... +........ + .......+
T Consensus 374 ~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lw-d~~~-~~~~~~~~~--~--~~~~~~~v 446 (524)
T 2j04_B 374 DGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLH-PMVLAGSADGSLIIT-NAAR-RLLHGIKNS--S--ATQKSLRL 446 (524)
T ss_dssp CSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSC-CBCEEEETTTEEECC-BSCS-STTTCC----------CCCCEE
T ss_pred CCCCcEEEEECcccccceeeecCCCceEEEEeCCCC-CeEEEEECCCEEEEE-echH-hhccccccC--c--cceeeeEE
Confidence 999999999999999989999999999999999998 589999999999775 4321 111000000 0 00000000
Q ss_pred chhhhhhhcccccCCCceeEEEeecCCCceEEe--ccccccc--cCCceEEEEecCCcc-HHHHHhhcCCCchhhHH
Q psy307 654 SSIIQEICSGWSLSDSEQYALQFSETNNKNYIT--EKNRNEI--KNGSVLRLAFSASKT-ADDILSKLSDKNASLEE 725 (1019)
Q Consensus 654 Ss~~~~~~~~wsls~~e~~al~~sd~~~~~~it--~~~~~~I--~ng~Vl~LafSPd~~-a~~Ilt~~~d~~i~lw~ 725 (1019)
-.|.+++..... ...++.....+. ......+ |.+.|.+++|+|++. ...+++|..+|.|+||+
T Consensus 447 --------~~v~~sp~g~~~-~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 447 --------WKWDYSIKDDKY-RIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp --------EECBCCSSSCEE-EECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred --------EEeccCCCCCeE-EccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 012333222221 222221111111 1111112 578999999999974 35688888899999997
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-30 Score=292.92 Aligned_cols=272 Identities=13% Similarity=0.093 Sum_probs=220.7
Q ss_pred CCCCCC-CeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE
Q psy307 293 PTDYQG-RSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC 371 (1019)
Q Consensus 293 ~~~~~g-r~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~ 371 (1019)
.++++| +.+++++.|+.|++|+...... .....+.+|.+.|++++|+|+++.+|++|+.||.|++||+.. ..
T Consensus 80 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~ 152 (383)
T 3ei3_B 80 EWHPTHPTTVAVGSKGGDIILWDYDVQNK-----TSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG--SV 152 (383)
T ss_dssp EECSSCTTEEEEEEBTSCEEEEETTSTTC-----EEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS--CE
T ss_pred EECCCCCCEEEEEcCCCeEEEEeCCCccc-----ceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC--Cc
Confidence 356778 8999999999999998874321 223334589999999999996689999999999999999953 44
Q ss_pred EEEecc---cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCC
Q psy307 372 VRTYYG---HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTG 448 (1019)
Q Consensus 372 ~~~~~g---h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg 448 (1019)
+..+.. |...|.+++|+|++ .+|++|+.||.|++||+ .+..+..+.+|...|.+++|+|++
T Consensus 153 ~~~~~~~~~~~~~v~~~~~~~~~--------------~~l~~~~~d~~i~i~d~--~~~~~~~~~~h~~~v~~~~~~~~~ 216 (383)
T 3ei3_B 153 IQVFAKTDSWDYWYCCVDVSVSR--------------QMLATGDSTGRLLLLGL--DGHEIFKEKLHKAKVTHAEFNPRC 216 (383)
T ss_dssp EEEEECCCCSSCCEEEEEEETTT--------------TEEEEEETTSEEEEEET--TSCEEEEEECSSSCEEEEEECSSC
T ss_pred eEEEeccCCCCCCeEEEEECCCC--------------CEEEEECCCCCEEEEEC--CCCEEEEeccCCCcEEEEEECCCC
Confidence 555544 44889999999988 69999999999999998 467888899999999999999999
Q ss_pred C-EEEEEEcCCeEEEEECCC----CceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC-CCCE
Q psy307 449 T-NFISAGYDRYLKLWDTES----GECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP-NNKW 522 (1019)
Q Consensus 449 ~-~l~S~s~Dg~I~lWDl~t----~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp-dg~~ 522 (1019)
+ .|++++.|++|++||+++ +.++..+. +...+.+++|+| ++.+
T Consensus 217 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-------------------------------~~~~v~~~~~s~~~~~~ 265 (383)
T 3ei3_B 217 DWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-------------------------------HEKPVNAAYFNPTDSTK 265 (383)
T ss_dssp TTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-------------------------------CSSCEEEEEECTTTSCE
T ss_pred CCEEEEEeCCCEEEEEeCCCCCcccceEEEec-------------------------------CCCceEEEEEcCCCCCE
Confidence 9 899999999999999987 44444333 334567778888 8999
Q ss_pred EEEEecCCeEEEEEccCcccccceeEEecccc---------------ccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy307 523 LACQSMDNKILIFSALNRFKLNRKKTFEGHMV---------------AGYACSLDFSPDMSYLISGDADGKCYIWDWKTT 587 (1019)
Q Consensus 523 Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~---------------~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~ 587 (1019)
|++++.|+.|++||+.+.... ..+.+|.. .+.+..++|+|+|++ +|+.||.|+|||+.++
T Consensus 266 l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~ 340 (383)
T 3ei3_B 266 LLTTDQRNEIRVYSSYDWSKP---DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG 340 (383)
T ss_dssp EEEEESSSEEEEEETTBTTSC---SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC
T ss_pred EEEEcCCCcEEEEECCCCccc---cccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC
Confidence 999999999999999876433 33433321 134555777888877 8889999999999999
Q ss_pred ceeeeeec--cCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 588 KLFKKWKA--HDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 588 ~~l~~l~~--h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+.+..+.+ |.+.+..++|+|++ .+|++++ ||.|++|
T Consensus 341 ~~~~~l~~~~~~~~~~~~~~s~~g-~~l~s~s-d~~i~iw 378 (383)
T 3ei3_B 341 GLVHQLRDPNAAGIISLNKFSPTG-DVLASGM-GFNILIW 378 (383)
T ss_dssp CEEEEECBTTBCSCCCEEEECTTS-SEEEEEE-TTEEEEE
T ss_pred ceeeeecCCCCCceEEEEEEecCc-cEEEEec-CCcEEEE
Confidence 99999987 55778888999998 5888887 9999776
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-30 Score=291.07 Aligned_cols=252 Identities=16% Similarity=0.145 Sum_probs=208.2
Q ss_pred eeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEE
Q psy307 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 330 ~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L 408 (1019)
.+..|.++|++++|+|+ +.+|++|+.||.|++||+.... .++..+.+|...|.+++|+|++ .+|
T Consensus 3 ~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--------------~~l 67 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS--------------NRI 67 (372)
T ss_dssp EEESCSSCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT--------------TEE
T ss_pred eecccCCCeEEEEECCC-CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC--------------CEE
Confidence 34569999999999996 8899999999999999994432 2788899999999999999988 699
Q ss_pred EEEeCCCcEEEEEccCCC-eEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEec
Q psy307 409 LSCSMDCRVKLWEVYKEH-RCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHP 487 (1019)
Q Consensus 409 ~sgs~Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p 487 (1019)
++++.||.|++||+.... .....+..|...|.+++|+|++++|++++.|+.|++||++.+......
T Consensus 68 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~------------- 134 (372)
T 1k8k_C 68 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC------------- 134 (372)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE-------------
T ss_pred EEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee-------------
Confidence 999999999999994443 223345789999999999999999999999999999999876532111
Q ss_pred CCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCc---------------ccccceeEEecc
Q psy307 488 DEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNR---------------FKLNRKKTFEGH 552 (1019)
Q Consensus 488 ~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~---------------~~~~~~~~l~gh 552 (1019)
......+...+.+++|+|++++|++++.||.|++||+... ........+.+|
T Consensus 135 -------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (372)
T 1k8k_C 135 -------------KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS 201 (372)
T ss_dssp -------------EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC
T ss_pred -------------eeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC
Confidence 1112234567888999999999999999999999996421 011344556666
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 553 MVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 553 ~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
. ..+.+++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++ .+++++ .||.|++|.
T Consensus 202 ~--~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~ 271 (372)
T 1k8k_C 202 C--GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITES-SLVAAG-HDCFPVLFT 271 (372)
T ss_dssp S--SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEE
T ss_pred C--CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCC-CEEEEE-eCCeEEEEE
Confidence 5 779999999999999999999999999999999999999999999999999987 455555 999997763
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=295.90 Aligned_cols=278 Identities=13% Similarity=0.126 Sum_probs=231.6
Q ss_pred CeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCC---CC---cEEEEeeCCCeEEEEecCCCcEE-
Q psy307 299 RSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPK---SA---HLLLSCSMDCRVKLWEVYKERRC- 371 (1019)
Q Consensus 299 r~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd---~g---~lLaSgs~Dg~I~IWdl~~~~~~- 371 (1019)
+.+++++.|+.|++|+..... ...+...+..+.+|...|++++|+|+ ++ .+|++|+.||.|++||+.. ...
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~-~~~~ 104 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLD-NENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR-EDET 104 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCT-TCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEE-CTTT
T ss_pred CeEEEEcCCCEEEEEECCCcc-cccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccC-Cccc
Confidence 789999999999999987543 12334578899999999999999995 27 8999999999999999943 333
Q ss_pred ----EEEeccc-----CccEeEEEEc----CCCCceeEEEeecCCCCcE-EEEEeCCCcEEEEEccCC-----CeEEE--
Q psy307 372 ----VRTYYGH-----RQAVRDICFN----NTGTNFISAIRWFPKSAHL-LLSCSMDCRVKLWEVYKE-----HRCVR-- 430 (1019)
Q Consensus 372 ----~~~~~gh-----~~~V~~i~fs----pdg~~~vs~i~~~p~~~~~-L~sgs~Dg~I~IWDl~~~-----~~~~~-- 430 (1019)
+..+.+| ...|.+++|+ |++ .+ |++|+.||.|++||+... ...+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 170 (397)
T 1sq9_A 105 KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL--------------SHRLVATDVKGTTYIWKFHPFADESNSLTLNWS 170 (397)
T ss_dssp CCEEEEEECCSCTTGGGSCEEEEEEECCC------------------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC
T ss_pred ccccceeecccccccCCCcEEEEEEeeccCCCC--------------ceEEEEEeCCCcEEEEeCCccccccccceeecc
Confidence 7778888 5899999999 887 57 999999999999999650 22222
Q ss_pred ---EE-------ccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCc
Q psy307 431 ---TY-------YGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDM 500 (1019)
Q Consensus 431 ---~l-------~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~ 500 (1019)
.+ ..|...|.+++|+|++ .|++++.|+.|++||+++++++..+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------------------- 226 (397)
T 1sq9_A 171 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ----------------------- 226 (397)
T ss_dssp CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC-----------------------
T ss_pred CcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecc-----------------------
Confidence 55 4589999999999999 9999999999999999998887766540
Q ss_pred eeeeCCC---CCcccEEEEcCCCCEEEEEecC---CeEEEEEccCcccccceeEEec-------------cccccceEEE
Q psy307 501 KYIADPT---MHSMPAVTSSPNNKWLACQSMD---NKILIFSALNRFKLNRKKTFEG-------------HMVAGYACSL 561 (1019)
Q Consensus 501 ~~i~~~~---~~~i~~v~~spdg~~Lasgs~D---g~I~iwd~~~~~~~~~~~~l~g-------------h~~~~~V~~v 561 (1019)
..+ ...+.+++|+|++++|++++.| |.|++||+.++ .....+.+ |. ..|.++
T Consensus 227 ----~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~ 297 (397)
T 1sq9_A 227 ----HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHS--SWVMSL 297 (397)
T ss_dssp ----C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBS--SCEEEE
T ss_pred ----ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC---cccceeccCcccccccccccccC--CcEEEE
Confidence 002 3557778888999999999999 99999999876 34466666 65 779999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee------cc---------------CCCEEEEEEcCCCC---------c
Q psy307 562 DFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK------AH---------------DGVCISTLWHPHEP---------S 611 (1019)
Q Consensus 562 ~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~------~h---------------~~~V~sl~~sp~~~---------~ 611 (1019)
+|+|++++|++|+.||.|+|||+.+++.+..+. +| ...|.+++|+|++. .
T Consensus 298 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 377 (397)
T 1sq9_A 298 SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNE 377 (397)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSC
T ss_pred EECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccc
Confidence 999999999999999999999999999999999 88 89999999999973 5
Q ss_pred EEEEEeCCCcEEEE
Q psy307 612 KVVTAGWDAATAKV 625 (1019)
Q Consensus 612 ~l~s~s~Dg~I~iw 625 (1019)
+|++++.||.|++|
T Consensus 378 ~l~s~~~dg~i~iw 391 (397)
T 1sq9_A 378 SLCCVCLDRSIRWF 391 (397)
T ss_dssp EEEEEETTTEEEEE
T ss_pred eEEEecCCCcEEEE
Confidence 89999999999766
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-30 Score=294.53 Aligned_cols=246 Identities=13% Similarity=0.105 Sum_probs=196.1
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEe--cccCccEeEEEEcC-CCCceeEEEeecC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTY--YGHRQAVRDICFNN-TGTNFISAIRWFP 402 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~--~gh~~~V~~i~fsp-dg~~~vs~i~~~p 402 (1019)
+...++.+|.+.|++++|+|++..+|++|+.||.|+|||+... .....+ .+|...|.+++|+| ++
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~----------- 131 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-NKTSFIQGMGPGDAITGMKFNQFNT----------- 131 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST-TCEEEECCCSTTCBEEEEEEETTEE-----------
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-ccceeeecCCcCCceeEEEeCCCCC-----------
Confidence 4567889999999999999975489999999999999999543 333444 47999999999998 44
Q ss_pred CCCcEEEEEeCCCcEEEEEccCCCeEEEEEcc---ccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCc
Q psy307 403 KSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG---HRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKV 479 (1019)
Q Consensus 403 ~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~---H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~ 479 (1019)
.+|++++.|+.|++||+.. .....+.. |...|.+++|+|++++|++++.|+.|++||+ +++++..+..
T Consensus 132 ---~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~--- 202 (383)
T 3ei3_B 132 ---NQLFVSSIRGATTLRDFSG--SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKL--- 202 (383)
T ss_dssp ---EEEEEEETTTEEEEEETTS--CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEEC---
T ss_pred ---CEEEEEeCCCEEEEEECCC--CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEecc---
Confidence 7999999999999999953 44555544 4588999999999999999999999999999 4555555443
Q ss_pred eEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCC-EEEEEecCCeEEEEEccCcccc-cceeEEeccccccc
Q psy307 480 AYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK-WLACQSMDNKILIFSALNRFKL-NRKKTFEGHMVAGY 557 (1019)
Q Consensus 480 v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~-~Lasgs~Dg~I~iwd~~~~~~~-~~~~~l~gh~~~~~ 557 (1019)
+...|.+++|+|+++ +|++++.|+.|++||+.+.... .....+ +|. ..
T Consensus 203 ---------------------------h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~--~~ 252 (383)
T 3ei3_B 203 ---------------------------HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHE--KP 252 (383)
T ss_dssp ---------------------------SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECS--SC
T ss_pred ---------------------------CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCC--Cc
Confidence 335567788888888 8999999999999999874321 223333 565 77
Q ss_pred eEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeeeeccC-----------------CCEEEEEEcCCCCcEEEEEeCC
Q psy307 558 ACSLDFSP-DMSYLISGDADGKCYIWDWKTTKLFKKWKAHD-----------------GVCISTLWHPHEPSKVVTAGWD 619 (1019)
Q Consensus 558 V~~v~fsp-dg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~-----------------~~V~sl~~sp~~~~~l~s~s~D 619 (1019)
|.+++|+| +|++|++++.||.|++||+.+++.+..+.+|. +.+..++|+|++. + +++.|
T Consensus 253 v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~-~--s~s~d 329 (383)
T 3ei3_B 253 VNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ-L--LLNDK 329 (383)
T ss_dssp EEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT-T--CTTCC
T ss_pred eEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcc-c--ccCCC
Confidence 99999999 99999999999999999999998877777653 3444566666663 3 77788
Q ss_pred CcEEEE
Q psy307 620 AATAKV 625 (1019)
Q Consensus 620 g~I~iw 625 (1019)
|.|++|
T Consensus 330 ~~i~iw 335 (383)
T 3ei3_B 330 RTIDIY 335 (383)
T ss_dssp CCEEEE
T ss_pred CeEEEE
Confidence 888665
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-31 Score=299.73 Aligned_cols=296 Identities=13% Similarity=0.103 Sum_probs=220.6
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc--E
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER--R 370 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~--~ 370 (1019)
.++++|+.+++++.|+.|++|+..... .+.+.++.+|.+.|++++|+|+ +.+|++|+.||.|++||+.... .
T Consensus 18 ~~s~~g~~l~~~~~d~~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~d~~v~vwd~~~~~~~~ 91 (377)
T 3dwl_C 18 AFNSQRTEFVTTTATNQVELYEQDGNG-----WKHARTFSDHDKIVTCVDWAPK-SNRIVTCSQDRNAYVYEKRPDGTWK 91 (377)
T ss_dssp EECSSSSEEECCCSSSCBCEEEEETTE-----EEECCCBCCCSSCEEEEEECTT-TCCEEEEETTSSEEEC------CCC
T ss_pred EECCCCCEEEEecCCCEEEEEEccCCc-----eEEEEEEecCCceEEEEEEeCC-CCEEEEEeCCCeEEEEEcCCCCcee
Confidence 467789999999999999999876321 1567789999999999999996 7899999999999999995433 2
Q ss_pred EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe--EEEEEcc-ccccEeEEEEecC
Q psy307 371 CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR--CVRTYYG-HRQAVRDICFNNT 447 (1019)
Q Consensus 371 ~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~--~~~~l~~-H~~~V~sl~fspd 447 (1019)
....+.+|...|.+++|+|++ .+|++|+.|+.|++||+..... +...+.+ |...|.+++|+|+
T Consensus 92 ~~~~~~~~~~~v~~~~~~~~~--------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 157 (377)
T 3dwl_C 92 QTLVLLRLNRAATFVRWSPNE--------------DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN 157 (377)
T ss_dssp CEEECCCCSSCEEEEECCTTS--------------SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT
T ss_pred eeeEecccCCceEEEEECCCC--------------CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC
Confidence 567788999999999999998 6899999999999999955443 4667777 9999999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCC-ceeeeCCCCCcccEEEEcCCCCEEEEE
Q psy307 448 GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVD-MKYIADPTMHSMPAVTSSPNNKWLACQ 526 (1019)
Q Consensus 448 g~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~-~~~i~~~~~~~i~~v~~spdg~~Lasg 526 (1019)
+++|++++.|++|++||++.+......... +.+.. .+.. ..... .+...+.+++|+|++++|+++
T Consensus 158 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---------~~~~~----~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~ 223 (377)
T 3dwl_C 158 NVLLAAGCADRKAYVLSAYVRDVDAKPEAS---------VWGSR----LPFNTVCAEY-PSGGWVHAVGFSPSGNALAYA 223 (377)
T ss_dssp SSEEEEEESSSCEEEEEECCSSCC-CCCSC---------SSCSC----CCEEEEEECC-CCSSSEEEEEECTTSSCEEEE
T ss_pred CCEEEEEeCCCEEEEEEEEecccCCCcccc---------ccccc----cchhhhhhcc-cCCceEEEEEECCCCCEEEEE
Confidence 999999999999999998755422111100 00000 0000 01111 566779999999999999999
Q ss_pred ecCCeEEEEEccCcccc-cceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--ee-------------
Q psy307 527 SMDNKILIFSALNRFKL-NRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK--LF------------- 590 (1019)
Q Consensus 527 s~Dg~I~iwd~~~~~~~-~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~--~l------------- 590 (1019)
+.||.|++||+.++... ..+..+.+|. ..|.+++|+|+|++|++|+.++.+ +|+..... ..
T Consensus 224 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (377)
T 3dwl_C 224 GHDSSVTIAYPSAPEQPPRALITVKLSQ--LPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFT 300 (377)
T ss_dssp ETTTEEC-CEECSTTSCEEECCCEECSS--SCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBS
T ss_pred eCCCcEEEEECCCCCCcceeeEeecCCC--CceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccc
Confidence 99999999999887431 1156677776 679999999999999999877766 66654211 00
Q ss_pred ---------------------eee----------------eccCCCEEEEEEcCCCCc---EEEEEeCCCcEEEE
Q psy307 591 ---------------------KKW----------------KAHDGVCISTLWHPHEPS---KVVTAGWDAATAKV 625 (1019)
Q Consensus 591 ---------------------~~l----------------~~h~~~V~sl~~sp~~~~---~l~s~s~Dg~I~iw 625 (1019)
..+ ..|.+.|+++++.+.++. .++|||.||.|++|
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iW 375 (377)
T 3dwl_C 301 HTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLW 375 (377)
T ss_dssp SSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred cccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEe
Confidence 001 139999999998776544 69999999999877
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-30 Score=321.37 Aligned_cols=254 Identities=19% Similarity=0.301 Sum_probs=219.1
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
+..+++.+|.+.|++++|+|+ +.+|++|+.||.|+|||+ ..+..+..+.+|..+|.+++|+|++
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~-~~~la~~~~~g~v~iwd~-~~~~~~~~~~~~~~~v~~~~~s~~~-------------- 67 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVEIWNY-ETQVEVRSIQVTETPVRAGKFIARK-------------- 67 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEET-TTTEEEEEEECCSSCEEEEEEEGGG--------------
T ss_pred ccceeeecCCCceEEEEECCC-CCEEEEEeCCCEEEEEEC-CCCceEEEEecCCCcEEEEEEeCCC--------------
Confidence 456789999999999999996 889999999999999999 5567888999999999999999998
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEEEecCCceEEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESG-ECISRFTSRKVAYCVK 484 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~-~~i~~~~~~~~v~~v~ 484 (1019)
.+|++|+.||.|++||+ ..+..+..+.+|.+.|.+++|+|++++|++++.||+|++||+.++ .+...+..
T Consensus 68 ~~l~~~~~dg~i~vw~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-------- 138 (814)
T 3mkq_A 68 NWIIVGSDDFRIRVFNY-NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-------- 138 (814)
T ss_dssp TEEEEEETTSEEEEEET-TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC--------
T ss_pred CEEEEEeCCCeEEEEEC-CCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC--------
Confidence 68999999999999999 567788889999999999999999999999999999999999876 44443332
Q ss_pred EecCCCeeeeccCCCceeeeCCCCCcccEEEEcC-CCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEE
Q psy307 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP-NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDF 563 (1019)
Q Consensus 485 ~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~f 563 (1019)
+...+.+++|+| ++..|++++.||.|++||+.++.. ...+..+. ...+.+++|
T Consensus 139 ----------------------~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~---~~~~~~~~-~~~v~~~~~ 192 (814)
T 3mkq_A 139 ----------------------HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---NFTLTTGQ-ERGVNYVDY 192 (814)
T ss_dssp ----------------------CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC---SEEEECCC-TTCCCEEEE
T ss_pred ----------------------CCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc---eeEEecCC-CCCEEEEEE
Confidence 334567777888 788999999999999999977633 33444332 255889999
Q ss_pred cC--CCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceee
Q psy307 564 SP--DMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVK 632 (1019)
Q Consensus 564 sp--dg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~k 632 (1019)
+| ++.+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++ .++++++.||.|++| +....+
T Consensus 193 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vw-d~~~~~ 261 (814)
T 3mkq_A 193 YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIW-NSSTYK 261 (814)
T ss_dssp CCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEE-ETTTCS
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEE-ECCCCc
Confidence 99 99999999999999999999999999999999999999999998 599999999999776 444333
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=285.30 Aligned_cols=280 Identities=16% Similarity=0.212 Sum_probs=226.3
Q ss_pred eeeccCCCCeEEEEEcCC---CCcEEEEeeCCCeEEEEecCCCcEEEEEecc-----cCccEeEEEEcCCCCceeEEEee
Q psy307 329 HTWEGHTKGISAIRWFPK---SAHLLLSCSMDCRVKLWEVYKERRCVRTYYG-----HRQAVRDICFNNTGTNFISAIRW 400 (1019)
Q Consensus 329 ~~l~gH~~~V~~i~fspd---~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g-----h~~~V~~i~fspdg~~~vs~i~~ 400 (1019)
....+|.+.|++++|+|+ +...+++++.++.|++||+.. ...+..+.. |...|.+++|+|++.
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------- 82 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHS-QGEIRLLQSYVDADADENFYTCAWTYDSN-------- 82 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECG-GGCEEEEEEEECSCTTCCEEEEEEEECTT--------
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCC-CcEEEeeeeccccCCCCcEEEEEeccCCC--------
Confidence 345699999999999984 456777777788999999953 334444443 557799999988841
Q ss_pred cCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec-CCCEEEEEEcCCeEEEEECCCCceEEEE----e
Q psy307 401 FPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN-TGTNFISAGYDRYLKLWDTESGECISRF----T 475 (1019)
Q Consensus 401 ~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp-dg~~l~S~s~Dg~I~lWDl~t~~~i~~~----~ 475 (1019)
.++.+|++|+.||.|++||+ ..++.+..+.+|...|.+++|+| ++.+|++++.||+|++||+++++.+..+ .
T Consensus 83 --~~~~~l~~~~~dg~i~v~d~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 159 (366)
T 3k26_A 83 --TSHPLLAVAGSRGIIRIINP-ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 159 (366)
T ss_dssp --TCCEEEEEEETTCEEEEECT-TTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTS
T ss_pred --CCCCEEEEecCCCEEEEEEc-hhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccc
Confidence 11369999999999999999 56677888999999999999999 8999999999999999999999999888 3
Q ss_pred cCCceEEEEEecCCCeeeeccCCCceeee---------------------------------------CCCCCcccEEEE
Q psy307 476 SRKVAYCVKFHPDEDKQHLDIPVDMKYIA---------------------------------------DPTMHSMPAVTS 516 (1019)
Q Consensus 476 ~~~~v~~v~~~p~~~~~~~~~~~~~~~i~---------------------------------------~~~~~~i~~v~~ 516 (1019)
....+.+++|+|++..++.........++ ..+...|.+++|
T Consensus 160 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (366)
T 3k26_A 160 HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW 239 (366)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred ccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence 55789999999988766552222111111 126778999999
Q ss_pred cCCCCEEEEEecCCeEEEEEccCccc-----------ccceeEEeccccccceEEEEEcCC--CCEEEEEeCCCeEEEEe
Q psy307 517 SPNNKWLACQSMDNKILIFSALNRFK-----------LNRKKTFEGHMVAGYACSLDFSPD--MSYLISGDADGKCYIWD 583 (1019)
Q Consensus 517 spdg~~Lasgs~Dg~I~iwd~~~~~~-----------~~~~~~l~gh~~~~~V~~v~fspd--g~~Lasgs~DG~I~IWD 583 (1019)
+ +++|++++.||.|++||+.+... ......+.+|. ..|.+++|+|+ |++|++|+.||.|++||
T Consensus 240 ~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd 315 (366)
T 3k26_A 240 L--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ--CDIWYMRFSMDFWQKMLALGNQVGKLYVWD 315 (366)
T ss_dssp E--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS--CCSSCCCCEECTTSSEEEEECTTSCEEEEE
T ss_pred c--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC--CcEEEEEEcCCCCCcEEEEEecCCcEEEEE
Confidence 8 77999999999999999976532 12356667776 66889999999 99999999999999999
Q ss_pred CCCCce----eeeeecc--CCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 584 WKTTKL----FKKWKAH--DGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 584 l~t~~~----l~~l~~h--~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+.+++. ...+.+| .+.|.+++|+|++ .+|++++.||.|++|
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw 362 (366)
T 3k26_A 316 LEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS-SILIAVCDDASIWRW 362 (366)
T ss_dssp CCSSSGGGCEEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEE
T ss_pred CCCCCCccccceEEcccccCCceEEEEeCCCC-CeEEEEeCCCEEEEE
Confidence 999864 3477777 7899999999988 699999999999776
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=285.10 Aligned_cols=270 Identities=19% Similarity=0.288 Sum_probs=214.7
Q ss_pred CCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEe
Q psy307 296 YQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTY 375 (1019)
Q Consensus 296 ~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~ 375 (1019)
.+|+.+++++.|+.|++|+............+..++.+|...|++++|+|+ +.+|++|+.||+|+|||+ ..++++..+
T Consensus 37 ~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~lwd~-~~~~~~~~~ 114 (343)
T 2xzm_R 37 EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE-NCFAISSSWDKTLRLWDL-RTGTTYKRF 114 (343)
T ss_dssp CCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS-TTEEEEEETTSEEEEEET-TSSCEEEEE
T ss_pred CCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC-CCEEEEEcCCCcEEEEEC-CCCcEEEEE
Confidence 389999999999999999876543322234567889999999999999995 889999999999999999 556778899
Q ss_pred cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEc---cccccEeEEEEecCC----
Q psy307 376 YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYY---GHRQAVRDICFNNTG---- 448 (1019)
Q Consensus 376 ~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~---~H~~~V~sl~fspdg---- 448 (1019)
.+|...|.+++|+|++ .+|++|+.|++|++||+. ........ +|...|.+++|+|++
T Consensus 115 ~~h~~~v~~v~~sp~~--------------~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 178 (343)
T 2xzm_R 115 VGHQSEVYSVAFSPDN--------------RQILSAGAEREIKLWNIL--GECKFSSAEKENHSDWVSCVRYSPIMKSAN 178 (343)
T ss_dssp ECCCSCEEEEEECSST--------------TEEEEEETTSCEEEEESS--SCEEEECCTTTSCSSCEEEEEECCCCCSCS
T ss_pred cCCCCcEEEEEECCCC--------------CEEEEEcCCCEEEEEecc--CCceeeeecccCCCceeeeeeecccccccc
Confidence 9999999999999998 689999999999999995 23333333 789999999999987
Q ss_pred ------CEEEEEEcCCeEEEEECCCCceEEEEec-CCceEEEEEecCCCeeeeccCCCceeeeC-----------CCCCc
Q psy307 449 ------TNFISAGYDRYLKLWDTESGECISRFTS-RKVAYCVKFHPDEDKQHLDIPVDMKYIAD-----------PTMHS 510 (1019)
Q Consensus 449 ------~~l~S~s~Dg~I~lWDl~t~~~i~~~~~-~~~v~~v~~~p~~~~~~~~~~~~~~~i~~-----------~~~~~ 510 (1019)
.+|++++.|++|++||. .++....+.. ...+.+++|+|++..++.........+++ .+.+.
T Consensus 179 ~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~ 257 (343)
T 2xzm_R 179 KVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGST 257 (343)
T ss_dssp CCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSC
T ss_pred ccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCc
Confidence 78999999999999994 4566666654 46799999999988765533222222222 13456
Q ss_pred ccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEe-----------ccccccceEEEEEcCCCCEEEEEeCCCeE
Q psy307 511 MPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFE-----------GHMVAGYACSLDFSPDMSYLISGDADGKC 579 (1019)
Q Consensus 511 i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~-----------gh~~~~~V~~v~fspdg~~Lasgs~DG~I 579 (1019)
+.+++|+|++.+++++ .|+.|++|++.+..... ...+. +|. ..+.+++|+|+|++|++|+.||.|
T Consensus 258 v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~g~~l~sg~~Dg~v 333 (343)
T 2xzm_R 258 INQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAP-VCTIEAEPITKAEGQKGKN--PQCTSLAWNALGKKLFAGFTDGVI 333 (343)
T ss_dssp EEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCS-EEECCCCSGGGBTTBCCSC--CCEEEEEECSSSCCEEEEETTSEE
T ss_pred EEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCc-eEEeecCcchhhhhhcCCC--CceEEEEECCCCCeEEEecCCceE
Confidence 8999999999887755 58889999997653321 11222 444 669999999999999999999999
Q ss_pred EEEeCCCCc
Q psy307 580 YIWDWKTTK 588 (1019)
Q Consensus 580 ~IWDl~t~~ 588 (1019)
++|++.++.
T Consensus 334 ~~w~~~~g~ 342 (343)
T 2xzm_R 334 RTFSFETSA 342 (343)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEccC
Confidence 999987653
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-30 Score=295.44 Aligned_cols=253 Identities=21% Similarity=0.315 Sum_probs=211.3
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.++++|+.+++++.|+.+++|+................+.||.+.|.+++|+|+++..|++|+.|++|++||+. .+.++
T Consensus 115 ~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~-~~~~~ 193 (380)
T 3iz6_a 115 AFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT-TGQRI 193 (380)
T ss_dssp EECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTT-TCCEE
T ss_pred EECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcC-CCcEE
Confidence 46789999999999999999998653322223345678999999999999999878889999999999999994 45556
Q ss_pred EEe-----cccCccEeEEEEcC-CCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec
Q psy307 373 RTY-----YGHRQAVRDICFNN-TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN 446 (1019)
Q Consensus 373 ~~~-----~gh~~~V~~i~fsp-dg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp 446 (1019)
..+ .+|...|.+++|++ ++ .+|++|+.||+|++||++.....+..+.+|.+.|.+++|+|
T Consensus 194 ~~~~~~~~~~h~~~v~~~~~~~~~~--------------~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p 259 (380)
T 3iz6_a 194 SIFGSEFPSGHTADVLSLSINSLNA--------------NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP 259 (380)
T ss_dssp EEECCCSSSSCCSCEEEEEECSSSC--------------CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECT
T ss_pred EEeecccCCCCccCeEEEEeecCCC--------------CEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEec
Confidence 655 67888999888876 44 79999999999999999777788899999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE
Q psy307 447 TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ 526 (1019)
Q Consensus 447 dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg 526 (1019)
++++|++|+.||+|++||++++.++..+..+... ...+...+.+++|+|+|++|++|
T Consensus 260 ~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~-----------------------~~~~~~~v~~~~~s~~g~~l~~g 316 (380)
T 3iz6_a 260 DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR-----------------------NDNELPIVTSVAFSISGRLLFAG 316 (380)
T ss_dssp TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSS-----------------------SCCSSCSCSEEEECSSSSEEEEE
T ss_pred CCCeEEEEcCCCeEEEEECCCCcEEEEecccccc-----------------------cccccCceEEEEECCCCCEEEEE
Confidence 9999999999999999999999887766542100 01123457899999999999999
Q ss_pred ecCCeEEEEEccCcccccceeEE----eccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy307 527 SMDNKILIFSALNRFKLNRKKTF----EGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK 588 (1019)
Q Consensus 527 s~Dg~I~iwd~~~~~~~~~~~~l----~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~ 588 (1019)
+.||.|++||+..+... ..+ .+|. +.|.+++|+|||++|++|+.||+|+||++...+
T Consensus 317 ~~dg~i~vwd~~~~~~~---~~~~~~~~~h~--~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 317 YSNGDCYVWDTLLAEMV---LNLGTLQNSHE--GRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CTTSCEEEEETTTCCEE---EEECCSCSSCC--CCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ECCCCEEEEECCCCceE---EEEecccCCCC--CceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999999876332 333 4565 779999999999999999999999999987654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-29 Score=288.97 Aligned_cols=269 Identities=23% Similarity=0.330 Sum_probs=221.7
Q ss_pred CCeeeeCCCCCceeeecCCCCCCccCCcccee--eeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEe
Q psy307 298 GRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVH--TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTY 375 (1019)
Q Consensus 298 gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~--~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~ 375 (1019)
+..++.+ .|+.|+||+.... ++++ .+.+|...|++|+|+|+ +.+|++|+.||+|+|||+ ..+++++.+
T Consensus 116 ~n~lAvg-ld~tV~lWd~~tg-------~~~~~~~~~~~~~~V~sv~fspd-g~~lasgs~Dg~v~iWd~-~~~~~~~~~ 185 (420)
T 4gga_A 116 GNVLAVA-LDNSVYLWSASSG-------DILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDV-QQQKRLRNM 185 (420)
T ss_dssp TSEEEEE-ETTEEEEEETTTC-------CEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSCEEEEET-TTTEEEEEE
T ss_pred CCEEEEE-eCCEEEEEECCCC-------CEEEEEEecCCCCcEEEEEECCC-CCEEEEEECCCeEEEEEc-CCCcEEEEE
Confidence 3455555 6999999987632 3333 45678889999999996 889999999999999999 567889999
Q ss_pred cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEE
Q psy307 376 YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG 455 (1019)
Q Consensus 376 ~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s 455 (1019)
.+|...|.++.+++ .+|++|+.|+.+++||.......+..+.+|...+..+.|+|+++++++++
T Consensus 186 ~~h~~~v~~~s~~~----------------~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~ 249 (420)
T 4gga_A 186 TSHSARVGSLSWNS----------------YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG 249 (420)
T ss_dssp CCCSSCEEEEEEET----------------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eCCCCceEEEeeCC----------------CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeee
Confidence 99999999887753 58999999999999999888888999999999999999999999999999
Q ss_pred cCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCC-EEEE--EecCCeE
Q psy307 456 YDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK-WLAC--QSMDNKI 532 (1019)
Q Consensus 456 ~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~-~Las--gs~Dg~I 532 (1019)
.|+.|++||..+++.... .......+...|.+++|+|.+. .+++ |+.|++|
T Consensus 250 ~D~~v~i~~~~~~~~~~~--------------------------~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I 303 (420)
T 4gga_A 250 NDNLVNVWPSAPGEGGWV--------------------------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 303 (420)
T ss_dssp TTSCEEEEESSCCSSCSC--------------------------CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEE
T ss_pred ccccceEEeeccccccce--------------------------eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEE
Confidence 999999999987653110 0011223445566777777654 4444 4579999
Q ss_pred EEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCC
Q psy307 533 LIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD--ADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEP 610 (1019)
Q Consensus 533 ~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs--~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~ 610 (1019)
++||+.++. ....+..+ ..++++.|+|+++.+++++ .||.|+|||+.+++++.++.+|.+.|++++|+|++
T Consensus 304 ~iwd~~t~~---~~~~~~~~---~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg- 376 (420)
T 4gga_A 304 RIWNVCSGA---CLSAVDAH---SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG- 376 (420)
T ss_dssp EEEETTTTE---EEEEEECS---SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-
T ss_pred EEEeCCccc---cceeeccc---cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-
Confidence 999999873 34555555 5688999999999988765 78999999999999999999999999999999998
Q ss_pred cEEEEEeCCCcEEEE
Q psy307 611 SKVVTAGWDAATAKV 625 (1019)
Q Consensus 611 ~~l~s~s~Dg~I~iw 625 (1019)
.+|+|||.||+|++|
T Consensus 377 ~~l~S~s~D~tvriW 391 (420)
T 4gga_A 377 ATVASAAADETLRLW 391 (420)
T ss_dssp SCEEEEETTTEEEEE
T ss_pred CEEEEEecCCeEEEE
Confidence 689999999999877
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=290.73 Aligned_cols=269 Identities=22% Similarity=0.295 Sum_probs=225.0
Q ss_pred CCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeecc-CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEE
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEG-HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVR 373 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~g-H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~ 373 (1019)
+..+..+++++.|+.|.+|+.... +....+.. |.+.|++++|+|+ +.+|++|+.||.|++||+ ..++.+.
T Consensus 100 ~~s~~~l~~~~~d~~v~lw~~~~~-------~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~-~~~~~~~ 170 (401)
T 4aez_A 100 DWSNLNVVAVALERNVYVWNADSG-------SVSALAETDESTYVASVKWSHD-GSFLSVGLGNGLVDIYDV-ESQTKLR 170 (401)
T ss_dssp EECTTSEEEEEETTEEEEEETTTC-------CEEEEEECCTTCCEEEEEECTT-SSEEEEEETTSCEEEEET-TTCCEEE
T ss_pred eecCCCEEEEECCCeEEEeeCCCC-------cEeEeeecCCCCCEEEEEECCC-CCEEEEECCCCeEEEEEC-cCCeEEE
Confidence 334566888999999999987642 33445544 8999999999995 889999999999999999 5567788
Q ss_pred EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE
Q psy307 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS 453 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S 453 (1019)
.+.+|...|.+++|++ ++|++|+.||.|++||++........+.+|.+.|.+++|+|++++|++
T Consensus 171 ~~~~~~~~v~~~~~~~----------------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 234 (401)
T 4aez_A 171 TMAGHQARVGCLSWNR----------------HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLAS 234 (401)
T ss_dssp EECCCSSCEEEEEEET----------------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred EecCCCCceEEEEECC----------------CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEE
Confidence 8999999999999843 589999999999999997788889999999999999999999999999
Q ss_pred EEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC-CEEEEEe--cCC
Q psy307 454 AGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN-KWLACQS--MDN 530 (1019)
Q Consensus 454 ~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg-~~Lasgs--~Dg 530 (1019)
++.|+.|++||+++++++..+.. +...+.+++|+|++ .++++++ .|+
T Consensus 235 ~~~d~~v~iwd~~~~~~~~~~~~------------------------------~~~~v~~~~~~p~~~~ll~~~~gs~d~ 284 (401)
T 4aez_A 235 GGNDNVVQIWDARSSIPKFTKTN------------------------------HNAAVKAVAWCPWQSNLLATGGGTMDK 284 (401)
T ss_dssp EETTSCEEEEETTCSSEEEEECC------------------------------CSSCCCEEEECTTSTTEEEEECCTTTC
T ss_pred EeCCCeEEEccCCCCCccEEecC------------------------------CcceEEEEEECCCCCCEEEEecCCCCC
Confidence 99999999999999887665543 23456777788866 4555554 799
Q ss_pred eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEE--EeCCCeEEEEeCCCCceee--eeeccCCCEEEEEEc
Q psy307 531 KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLIS--GDADGKCYIWDWKTTKLFK--KWKAHDGVCISTLWH 606 (1019)
Q Consensus 531 ~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Las--gs~DG~I~IWDl~t~~~l~--~l~~h~~~V~sl~~s 606 (1019)
.|++||+.++. ....+..+ ..+.+++|+|+|+++++ |+.||.|+|||+.+++... .+.+|.+.|.+++|+
T Consensus 285 ~i~i~d~~~~~---~~~~~~~~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s 358 (401)
T 4aez_A 285 QIHFWNAATGA---RVNTVDAG---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS 358 (401)
T ss_dssp EEEEEETTTCC---EEEEEECS---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEEC
T ss_pred EEEEEECCCCC---EEEEEeCC---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEEC
Confidence 99999998773 33445433 56999999999999999 5589999999999866544 467899999999999
Q ss_pred CCCCcEEEEEeCCCcEEEE
Q psy307 607 PHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 607 p~~~~~l~s~s~Dg~I~iw 625 (1019)
|++ .+|++++.||.|++|
T Consensus 359 ~dg-~~l~s~~~dg~i~iw 376 (401)
T 4aez_A 359 PDG-RILSTAASDENLKFW 376 (401)
T ss_dssp TTS-SEEEEECTTSEEEEE
T ss_pred CCC-CEEEEEeCCCcEEEE
Confidence 998 699999999999766
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=306.00 Aligned_cols=249 Identities=14% Similarity=0.118 Sum_probs=192.5
Q ss_pred ceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC-cEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 327 QVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE-RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 327 ~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~-~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
......+|...|+||+|+|.++.+||+|+.||.|+|||+... ......+.+|.+.|++|+|+|.+.
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~------------- 177 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNT------------- 177 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCT-------------
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCC-------------
Confidence 345677899999999999977889999999999999999643 344556789999999999987431
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEcc--ccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYG--HRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCV 483 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~--H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v 483 (1019)
.+|++|+.||+|++||+. +......... +...+.+++|+|++.+|++|+.||+|++||++.. .+..+
T Consensus 178 ~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~--------- 246 (435)
T 4e54_B 178 NQFYASSMEGTTRLQDFK-GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNL--------- 246 (435)
T ss_dssp TEEEEECSSSCEEEEETT-SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCS---------
T ss_pred CEEEEEeCCCEEEEeecc-CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEE---------
Confidence 799999999999999994 3333333333 3456889999999999999999999999998643 22222
Q ss_pred EEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCC-EEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEE
Q psy307 484 KFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK-WLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562 (1019)
Q Consensus 484 ~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~-~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~ 562 (1019)
..|...|.+++|+|++. +|++|+.|+.|++||++............+|. ..|.+++
T Consensus 247 ---------------------~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~--~~v~~~~ 303 (435)
T 4e54_B 247 ---------------------RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHR--HPVNAAC 303 (435)
T ss_dssp ---------------------BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCS--SCEEECC
T ss_pred ---------------------ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeecc--cccccee
Confidence 22445677788888875 68899999999999998764443344445665 6799999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCC------CEEEEEEcCCCCcEEEEEeCCCcE
Q psy307 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDG------VCISTLWHPHEPSKVVTAGWDAAT 622 (1019)
Q Consensus 563 fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~------~V~sl~~sp~~~~~l~s~s~Dg~I 622 (1019)
|+|+|++|++|+.||.|+|||+.++.....+..|.. .+..+.|+|++...+++.+.|+.+
T Consensus 304 ~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 369 (435)
T 4e54_B 304 FSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNF 369 (435)
T ss_dssp BCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTS
T ss_pred ECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCe
Confidence 999999999999999999999999988887776643 345677899875333333445544
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-29 Score=284.86 Aligned_cols=265 Identities=19% Similarity=0.263 Sum_probs=209.2
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC-CcEEEEEecccCccEeEEEEcCC--CCceeEEEeecC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-ERRCVRTYYGHRQAVRDICFNNT--GTNFISAIRWFP 402 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~-~~~~~~~~~gh~~~V~~i~fspd--g~~~vs~i~~~p 402 (1019)
+++.++.+|.+.|++++|+|+ +.+|++|+.||.|+|||+.. ....+..+.+|...|.+++|+++ +
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----------- 69 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG----------- 69 (379)
T ss_dssp ---CCEEECCCCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-----------
T ss_pred CccEEecCCcccEEEEEEcCC-CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCC-----------
Confidence 456789999999999999996 88999999999999999953 55677889999999999999876 5
Q ss_pred CCCcEEEEEeCCCcEEEEEccCCC-eEEEEEccccccEeEEEEecC--CCEEEEEEcCCeEEEEECCCCceE--EEE-ec
Q psy307 403 KSAHLLLSCSMDCRVKLWEVYKEH-RCVRTYYGHRQAVRDICFNNT--GTNFISAGYDRYLKLWDTESGECI--SRF-TS 476 (1019)
Q Consensus 403 ~~~~~L~sgs~Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~fspd--g~~l~S~s~Dg~I~lWDl~t~~~i--~~~-~~ 476 (1019)
.+|++|+.||.|++||+.... ..+..+.+|...|.+++|+|+ +.+|++++.|+.|++||++++... ..+ .+
T Consensus 70 ---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 146 (379)
T 3jrp_A 70 ---TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH 146 (379)
T ss_dssp ---SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECC
T ss_pred ---CEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCC
Confidence 799999999999999995443 377888899999999999999 999999999999999999887432 222 22
Q ss_pred CCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccc-cceeEEeccccc
Q psy307 477 RKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKL-NRKKTFEGHMVA 555 (1019)
Q Consensus 477 ~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~-~~~~~l~gh~~~ 555 (1019)
...+.+++|+|..... .......+++.+|++++.||.|++||++..... .....+.+|.
T Consensus 147 ~~~v~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~-- 206 (379)
T 3jrp_A 147 AIGVNSASWAPATIEE------------------DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS-- 206 (379)
T ss_dssp TTCEEEEEECCCC----------------------------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS--
T ss_pred CCceEEEEEcCccccc------------------cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEeccc--
Confidence 3445555555432100 000111347999999999999999999865332 2345677776
Q ss_pred cceEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCc-----eeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 556 GYACSLDFSPD---MSYLISGDADGKCYIWDWKTTK-----LFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 556 ~~V~~v~fspd---g~~Lasgs~DG~I~IWDl~t~~-----~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
..|.+++|+|+ +.+|++|+.||.|+|||+.++. .+.....|...|.+++|+|++ .+|++++.||.|++|.
T Consensus 207 ~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 207 DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWK 284 (379)
T ss_dssp SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEESSSSEEEEE
T ss_pred CcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCC-CEEEEecCCCcEEEEe
Confidence 77999999999 8999999999999999999864 222334588899999999998 5899999999997763
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-30 Score=291.51 Aligned_cols=282 Identities=10% Similarity=0.047 Sum_probs=216.8
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCC-------eEEEEecCCCcE---------EEEEecccCccEeEEEEcCCCCceeEEEe
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDC-------RVKLWEVYKERR---------CVRTYYGHRQAVRDICFNNTGTNFISAIR 399 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg-------~I~IWdl~~~~~---------~~~~~~gh~~~V~~i~fspdg~~~vs~i~ 399 (1019)
-+|+|++|+|+ +++|++||.|. .|++|++..... ....+.+|...|.+++++.+. ++.+
T Consensus 15 ~PV~sv~fs~d-g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~--~~~g-- 89 (365)
T 4h5i_A 15 YPAYGAKFLNN-DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGI--ILVG-- 89 (365)
T ss_dssp SCEEEEEEEET-TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTE--EEEE--
T ss_pred CCEEEEEEeCC-CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCE--EEEE--
Confidence 48999999996 89999987643 599999854321 123467888888888776432 1111
Q ss_pred ecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEE--------ccccccEeEEEEecCCCEEEEEE--cCCeEEEEECCCCc
Q psy307 400 WFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY--------YGHRQAVRDICFNNTGTNFISAG--YDRYLKLWDTESGE 469 (1019)
Q Consensus 400 ~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l--------~~H~~~V~sl~fspdg~~l~S~s--~Dg~I~lWDl~t~~ 469 (1019)
..++...|++|+.|+.+++|++......+... ..+...+.+++|+|||+++++++ .|++|+|||+++++
T Consensus 90 -~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~ 168 (365)
T 4h5i_A 90 -CNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT 168 (365)
T ss_dssp -CCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE
T ss_pred -ECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc
Confidence 11223455566778999999986554333322 22445689999999999977554 78999999999999
Q ss_pred eEEEEecCCceEEEEEecCCCeeeeccCCCce------------eeeCCCCCcccEEEEcCCCCEEEEEecCC----eEE
Q psy307 470 CISRFTSRKVAYCVKFHPDEDKQHLDIPVDMK------------YIADPTMHSMPAVTSSPNNKWLACQSMDN----KIL 533 (1019)
Q Consensus 470 ~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~------------~i~~~~~~~i~~v~~spdg~~Lasgs~Dg----~I~ 533 (1019)
++..+.++..+.+++|+|++...+........ .....+...+.+++|+|+++++++++.|+ .++
T Consensus 169 ~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~ 248 (365)
T 4h5i_A 169 EKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLT 248 (365)
T ss_dssp EEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEE
T ss_pred EEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEe
Confidence 99999988899999999999876653322211 12234556788999999999999999887 688
Q ss_pred EEEccCccc-ccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee-eccCCCEEEEEEcCCCCc
Q psy307 534 IFSALNRFK-LNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKW-KAHDGVCISTLWHPHEPS 611 (1019)
Q Consensus 534 iwd~~~~~~-~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l-~~h~~~V~sl~~sp~~~~ 611 (1019)
+|++..... ......+.+|. ..|++++|+|||++||+|+.||+|+|||+.+++++.++ .+|.+.|++++|+|++ .
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~--~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg-~ 325 (365)
T 4h5i_A 249 KISIKSGNTSVLRSKQVTNRF--KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDS-T 325 (365)
T ss_dssp EEEEETTEEEEEEEEEEESSC--SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTS-C
T ss_pred ecccccceecceeeeeecCCC--CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCC-C
Confidence 898875422 22234566776 67999999999999999999999999999999999885 7999999999999998 6
Q ss_pred EEEEEeCCCcEEEEe
Q psy307 612 KVVTAGWDAATAKVQ 626 (1019)
Q Consensus 612 ~l~s~s~Dg~I~iww 626 (1019)
+|+|||.|++|++|.
T Consensus 326 ~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 326 YVASVSAANTIHIIK 340 (365)
T ss_dssp EEEEEETTSEEEEEE
T ss_pred EEEEEeCCCeEEEEE
Confidence 999999999998873
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-29 Score=291.93 Aligned_cols=266 Identities=18% Similarity=0.298 Sum_probs=213.9
Q ss_pred cceeeeccCCCCe-EEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCC
Q psy307 326 TQVHTWEGHTKGI-SAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKS 404 (1019)
Q Consensus 326 ~~i~~l~gH~~~V-~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~ 404 (1019)
....++.+|.+.| +++.+. +.+|++|+.||+|++||+ ..++++..+.+|...|.+++|++++
T Consensus 112 ~~~~~l~~h~~~v~~~~~~~---~~~l~sgs~dg~i~vwd~-~~~~~~~~~~~h~~~V~~l~~~~~~------------- 174 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDS-INKKFLLQLSGHDGGVWALKYAHGG------------- 174 (464)
T ss_dssp CEEEEEECCSSSCEEEEEEE---TTEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEECSTT-------------
T ss_pred cceEEEcCCCCCcEEEEEEC---CCEEEEEcCCCcEEEEEC-CCCcEEEEEeCCCcCEEEEEEcCCC-------------
Confidence 3456899999885 666664 469999999999999999 5667889999999999999998875
Q ss_pred CcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEe--cCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEE
Q psy307 405 AHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN--NTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYC 482 (1019)
Q Consensus 405 ~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fs--pdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~ 482 (1019)
+|++|+.||+|++||+ ..+.++..+.+|.+.|.+++|+ +++.++++++.|++|++||++++..............
T Consensus 175 --~l~s~s~dg~i~vwd~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~ 251 (464)
T 3v7d_B 175 --ILVSGSTDRTVRVWDI-KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251 (464)
T ss_dssp --EEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSE
T ss_pred --EEEEEeCCCCEEEEEC-CCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcce
Confidence 7999999999999999 6677889999999999999999 4778999999999999999998876544433322222
Q ss_pred EEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEE
Q psy307 483 VKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562 (1019)
Q Consensus 483 v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~ 562 (1019)
+.+.|..... .......+...+ .+++++++++++++.||.|++||+.++ .....+.+|. ..|.+++
T Consensus 252 ~~~~~~~~~~-------~~~~~~~~~~~v--~~~~~~~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~--~~v~~~~ 317 (464)
T 3v7d_B 252 VFHTPEENPY-------FVGVLRGHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQM---KCLYILSGHT--DRIYSTI 317 (464)
T ss_dssp EESCGGGCTT-------EEEEECCCSSCE--EEEEEETTEEEEEETTSCEEEEETTTT---EEEEEECCCS--SCEEEEE
T ss_pred EeeccCCCeE-------EEEEccCccceE--EEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEecCCC--CCEEEEE
Confidence 3333322111 111222333334 445788999999999999999999876 4457777887 7799999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEecc
Q psy307 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDA 628 (1019)
Q Consensus 563 fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~ 628 (1019)
|+|++++|++|+.||.|++||+.+++++..+.+|...|.+++|++ .++++++.||+|++|.-.
T Consensus 318 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~ 380 (464)
T 3v7d_B 318 YDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDAN 380 (464)
T ss_dssp EETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS---SEEEEEETTSEEEEEETT
T ss_pred EcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECC
Confidence 999999999999999999999999999999999999999999983 589999999999776443
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-29 Score=301.04 Aligned_cols=299 Identities=16% Similarity=0.277 Sum_probs=244.1
Q ss_pred CCCCCCCeeeeCCCC----CceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC
Q psy307 293 PTDYQGRSFLHPPHD----VGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE 368 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D----~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~ 368 (1019)
.++++|+.+++++.+ +.|.+|+. .+.+..+.+|.+.|++++|+|++..+|++|+.||.|++||+ ..
T Consensus 123 ~~s~~~~~l~~~~~~~~~~~~v~~~d~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~-~~ 192 (615)
T 1pgu_A 123 SWDFEGRRLCVVGEGRDNFGVFISWDS---------GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG-PP 192 (615)
T ss_dssp EECTTSSEEEEEECCSSCSEEEEETTT---------CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEET-TT
T ss_pred EEeCCCCEEEEeccCCCCccEEEEEEC---------CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeC-CC
Confidence 356889999999887 68888873 24678899999999999999975559999999999999998 66
Q ss_pred cEEEEEecccCc---cEeEEEEcCC-CCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEE-c---cccccEe
Q psy307 369 RRCVRTYYGHRQ---AVRDICFNNT-GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY-Y---GHRQAVR 440 (1019)
Q Consensus 369 ~~~~~~~~gh~~---~V~~i~fspd-g~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l-~---~H~~~V~ 440 (1019)
.+++..+.+|.. .|.+++|+|+ + .+|++++.||.|++||+ ..++.+..+ . +|...|.
T Consensus 193 ~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------~~l~~~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~v~ 257 (615)
T 1pgu_A 193 FKFSASDRTHHKQGSFVRDVEFSPDSG--------------EFVITVGSDRKISCFDG-KSGEFLKYIEDDQEPVQGGIF 257 (615)
T ss_dssp BEEEEEECSSSCTTCCEEEEEECSTTC--------------CEEEEEETTCCEEEEET-TTCCEEEECCBTTBCCCSCEE
T ss_pred cceeeeecccCCCCceEEEEEECCCCC--------------CEEEEEeCCCeEEEEEC-CCCCEeEEecccccccCCceE
Confidence 788889999999 9999999998 7 69999999999999999 556677777 6 8999999
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecC-----Cc------------------------------------
Q psy307 441 DICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSR-----KV------------------------------------ 479 (1019)
Q Consensus 441 sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~-----~~------------------------------------ 479 (1019)
+++|+ ++++|++++.|+.|++||+++++++..+..+ ..
T Consensus 258 ~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~ 336 (615)
T 1pgu_A 258 ALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTIS 336 (615)
T ss_dssp EEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEEC
T ss_pred EEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEe
Confidence 99999 9999999999999999999988877665543 11
Q ss_pred -----eE---------------------------------EEEEecCCCeeee----------ccC--------------
Q psy307 480 -----AY---------------------------------CVKFHPDEDKQHL----------DIP-------------- 497 (1019)
Q Consensus 480 -----v~---------------------------------~v~~~p~~~~~~~----------~~~-------------- 497 (1019)
+. +++|.+ +..++. +..
T Consensus 337 ~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s 415 (615)
T 1pgu_A 337 GHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSK-AQEYSSISWDDTLKVNGITKHEFGSQPKVASAN 415 (615)
T ss_dssp CCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCS-TTCCEEEETTTEEEETTEEEEECSSCEEEEEEC
T ss_pred CCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECC-CcEEEEEeCCCCEEEEEcccCcccCCceEEEEc
Confidence 11 222211 111000 000
Q ss_pred --------------------------------------------------CCce------------eeeCCCCCcccEEE
Q psy307 498 --------------------------------------------------VDMK------------YIADPTMHSMPAVT 515 (1019)
Q Consensus 498 --------------------------------------------------~~~~------------~i~~~~~~~i~~v~ 515 (1019)
.... .....+...+.+++
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~ 495 (615)
T 1pgu_A 416 NDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYIS 495 (615)
T ss_dssp SSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEE
T ss_pred CCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEE
Confidence 0000 12234566788999
Q ss_pred EcCCCCEEEEEecCCeEEEEEccCcccccceeEEec-cccccceEEEEEcC----------CCCEEEEEeCCCeEEEEeC
Q psy307 516 SSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEG-HMVAGYACSLDFSP----------DMSYLISGDADGKCYIWDW 584 (1019)
Q Consensus 516 ~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~g-h~~~~~V~~v~fsp----------dg~~Lasgs~DG~I~IWDl 584 (1019)
|+|++++|++++.||.|++||+.++. ....+.+ |. ..|++++|+| ++++|++|+.||.|++||+
T Consensus 496 ~s~~g~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~h~--~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 570 (615)
T 1pgu_A 496 ISPSETYIAAGDVMGKILLYDLQSRE---VKTSRWAFRT--SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 570 (615)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTE---EEECCSCCCS--SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred ECCCCCEEEEcCCCCeEEEeeCCCCc---ceeEeecCCC--CceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEEC
Confidence 99999999999999999999998773 3455555 65 7799999999 9999999999999999999
Q ss_pred CCC-ceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 585 KTT-KLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 585 ~t~-~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.++ +++..+.+|.+.|.+++|+|++ . |++++.||+|++|
T Consensus 571 ~~~~~~~~~~~~h~~~v~~l~~s~~~-~-l~s~~~d~~v~iw 610 (615)
T 1pgu_A 571 KRPMKIIKALNAHKDGVNNLLWETPS-T-LVSSGADACIKRW 610 (615)
T ss_dssp SCTTCCEEETTSSTTCEEEEEEEETT-E-EEEEETTSCEEEE
T ss_pred CCCceechhhhcCccceEEEEEcCCC-C-eEEecCCceEEEE
Confidence 998 7899999999999999999998 5 9999999999776
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=295.74 Aligned_cols=296 Identities=16% Similarity=0.244 Sum_probs=225.3
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCC----ccCCccceeeeccCC------------CCeEEEEEcCCCC-cEEEEee
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDR----CFLPKTQVHTWEGHT------------KGISAIRWFPKSA-HLLLSCS 355 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~----~~lp~~~i~~l~gH~------------~~V~~i~fspd~g-~lLaSgs 355 (1019)
.++++|+.+++++.|+.|++|+...... .....+.+..+.+|. +.|++++|+|++. .+|++|+
T Consensus 35 ~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s 114 (447)
T 3dw8_B 35 EFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLST 114 (447)
T ss_dssp EECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeC
Confidence 3567899999999999999999875431 112334688899998 8999999999733 7899999
Q ss_pred CCCeEEEEecCCCcE--------------------------------------EEEE-ecccCccEeEEEEcCCCCceeE
Q psy307 356 MDCRVKLWEVYKERR--------------------------------------CVRT-YYGHRQAVRDICFNNTGTNFIS 396 (1019)
Q Consensus 356 ~Dg~I~IWdl~~~~~--------------------------------------~~~~-~~gh~~~V~~i~fspdg~~~vs 396 (1019)
.||.|++||+..... +.+. ..+|...|.+++|+|++
T Consensus 115 ~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----- 189 (447)
T 3dw8_B 115 NDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY----- 189 (447)
T ss_dssp CSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS-----
T ss_pred CCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC-----
Confidence 999999999843221 1112 36899999999999988
Q ss_pred EEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEE-------EccccccEeEEEEecCC-CEEEEEEcCCeEEEEECCCC
Q psy307 397 AIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRT-------YYGHRQAVRDICFNNTG-TNFISAGYDRYLKLWDTESG 468 (1019)
Q Consensus 397 ~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~-------l~~H~~~V~sl~fspdg-~~l~S~s~Dg~I~lWDl~t~ 468 (1019)
.+|++| .||.|++||+......+.. +.+|...|.+++|+|++ +.|++|+.||+|++||++++
T Consensus 190 ---------~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 190 ---------ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp ---------SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred ---------CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence 688888 7999999999655655553 56899999999999998 99999999999999999988
Q ss_pred ce----EEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccC-cccc
Q psy307 469 EC----ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALN-RFKL 543 (1019)
Q Consensus 469 ~~----i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~-~~~~ 543 (1019)
+. +..+..+..... ......+...+.+++|+|+|++|++++. +.|++||+.. +
T Consensus 260 ~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~--- 317 (447)
T 3dw8_B 260 ALCDRHSKLFEEPEDPSN------------------RSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN--- 317 (447)
T ss_dssp SSSCTTCEEECCC-----------------------CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS---
T ss_pred ccccceeeEeccCCCccc------------------cccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc---
Confidence 75 455544321100 0011123347889999999999999998 9999999986 4
Q ss_pred cceeEEeccccccc-------------eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec---------------
Q psy307 544 NRKKTFEGHMVAGY-------------ACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA--------------- 595 (1019)
Q Consensus 544 ~~~~~l~gh~~~~~-------------V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~--------------- 595 (1019)
..+..+.+|..... +..++|+|+|++|++|+.||.|+|||+.+++.+. +.+
T Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~ 396 (447)
T 3dw8_B 318 RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRK 396 (447)
T ss_dssp SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCC
T ss_pred cccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCcc
Confidence 34466666642111 3348999999999999999999999999987653 222
Q ss_pred ------------------cCCCEEEEEEcCCCCcEEEEEeCCCcEEEEecc
Q psy307 596 ------------------HDGVCISTLWHPHEPSKVVTAGWDAATAKVQDA 628 (1019)
Q Consensus 596 ------------------h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~ 628 (1019)
+...|.+++|+|++ .+|++++.++ +++|++.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~-~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 397 VCASGKRKKDEISVDSLDFNKKILHTAWHPKE-NIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp EECSSCCCTTCEEGGGCCTTSCCCEEEECSSS-SEEEEECSSC-EEEEECC
T ss_pred ccccCCcccccccccccccCCceeEEEECCCC-CEEEEEecce-eeeeccc
Confidence 23468899999998 5888887775 6677654
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-29 Score=276.17 Aligned_cols=289 Identities=21% Similarity=0.330 Sum_probs=223.9
Q ss_pred cEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCC
Q psy307 369 RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTG 448 (1019)
Q Consensus 369 ~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg 448 (1019)
.....++.+|...|++++|+|++ ++|++|+.||.|++|++ ..+.....+.+|...|.+++|+|++
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~--------------~~l~s~~~dg~i~iw~~-~~~~~~~~~~~h~~~v~~~~~~~~~ 77 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNG--------------EWLASSSADKLIKIWGA-YDGKFEKTISGHKLGISDVAWSSDS 77 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTS--------------SEEEEEETTSCEEEEET-TTCCEEEEECCCSSCEEEEEECTTS
T ss_pred ceeEEEEcccCCcEEEEEECCCC--------------CEEEEeeCCCeEEEEeC-CCcccchhhccCCCceEEEEEcCCC
Confidence 45667889999999999999998 69999999999999999 5667788899999999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec
Q psy307 449 TNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM 528 (1019)
Q Consensus 449 ~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~ 528 (1019)
++|++++.|+.|++||+++++++..+..+ ...+.+++|+|++++|++|+.
T Consensus 78 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~------------------------------~~~v~~~~~~~~~~~l~s~~~ 127 (312)
T 4ery_A 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGH------------------------------SNYVFCCNFNPQSNLIVSGSF 127 (312)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECC------------------------------SSCEEEEEECSSSSEEEEEET
T ss_pred CEEEEECCCCEEEEEECCCCcEEEEEcCC------------------------------CCCEEEEEEcCCCCEEEEEeC
Confidence 99999999999999999999887766543 244667788889999999999
Q ss_pred CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee-ccCCCEEEEEEcC
Q psy307 529 DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK-AHDGVCISTLWHP 607 (1019)
Q Consensus 529 Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~-~h~~~V~sl~~sp 607 (1019)
||.|++||+.++ .....+..|. ..|.+++|+|+|++|++|+.||.|++||+.+++.+..+. .|...+..++|+|
T Consensus 128 d~~i~iwd~~~~---~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (312)
T 4ery_A 128 DESVRIWDVKTG---KCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202 (312)
T ss_dssp TSCEEEEETTTC---CEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT
T ss_pred CCcEEEEECCCC---EEEEEecCCC--CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC
Confidence 999999999876 3456777776 679999999999999999999999999999999887764 4567899999999
Q ss_pred CCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEec
Q psy307 608 HEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITE 687 (1019)
Q Consensus 608 ~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~ 687 (1019)
++ .++++++.||.|++| +....+......++....... ...+.. .+..+++..+.++...+|..
T Consensus 203 ~~-~~l~~~~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~l~sg~~dg~i~vwd~ 266 (312)
T 4ery_A 203 NG-KYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYCI-------------FANFSV-TGGKWIVSGSEDNLVYIWNL 266 (312)
T ss_dssp TS-SEEEEEETTTEEEEE-ETTTTEEEEEECSSCCSSSCC-------------CEEEEC-SSSCEEEECCTTSCEEEEET
T ss_pred CC-CEEEEEcCCCeEEEE-ECCCCcEEEEEEecCCceEEE-------------EEEEEe-CCCcEEEEECCCCEEEEEEC
Confidence 98 699999999999665 554444433333222111000 000111 12223333333344445554
Q ss_pred cccccc-----cCCceEEEEecCCccHHHHHhhc--CCCchhhHH
Q psy307 688 KNRNEI-----KNGSVLRLAFSASKTADDILSKL--SDKNASLEE 725 (1019)
Q Consensus 688 ~~~~~I-----~ng~Vl~LafSPd~~a~~Ilt~~--~d~~i~lw~ 725 (1019)
.....+ |.+.|.+++|+|++ +.+++++ .|++|++|+
T Consensus 267 ~~~~~~~~~~~h~~~v~~~~~~p~~--~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 267 QTKEIVQKLQGHTDVVISTACHPTE--NIIASAALENDKTIKLWK 309 (312)
T ss_dssp TTCCEEEEECCCSSCEEEEEECSSS--SEEEEEECTTTCCEEEEE
T ss_pred CCchhhhhhhccCCcEEEEeecCcC--CceEEEEccCCccEEEec
Confidence 444333 68899999999998 6677665 699999996
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=279.38 Aligned_cols=242 Identities=20% Similarity=0.291 Sum_probs=196.2
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCC-CCcEEEEeeCCCeEEEEecCCCc-E
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPK-SAHLLLSCSMDCRVKLWEVYKER-R 370 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd-~g~lLaSgs~Dg~I~IWdl~~~~-~ 370 (1019)
.++++|+.+++++.|+.|++|+.... ..+++.++.+|.+.|++++|+|+ .+.+|+||+.||+|+|||+.... .
T Consensus 16 ~~s~~g~~las~s~D~~v~iw~~~~~-----~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~ 90 (297)
T 2pm7_B 16 VMDYYGKRMATCSSDKTIKIFEVEGE-----THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS 90 (297)
T ss_dssp EECTTSSEEEEEETTSCEEEEEBCSS-----CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC
T ss_pred EECCCCCEEEEEeCCCEEEEEecCCC-----CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE
Confidence 46788999999999999999987632 12467899999999999999864 47899999999999999996432 4
Q ss_pred EEEEecccCccEeEEEEcCC--CCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe-EEEEEccccccEeEEEEecC
Q psy307 371 CVRTYYGHRQAVRDICFNNT--GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR-CVRTYYGHRQAVRDICFNNT 447 (1019)
Q Consensus 371 ~~~~~~gh~~~V~~i~fspd--g~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~-~~~~l~~H~~~V~sl~fspd 447 (1019)
.+..+.+|...|.+++|+|+ + .+|++|+.||+|++||+..... ....+.+|...|.+++|+|+
T Consensus 91 ~~~~~~~h~~~v~~v~~~p~~~g--------------~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~ 156 (297)
T 2pm7_B 91 QIAVHAVHSASVNSVQWAPHEYG--------------PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (297)
T ss_dssp CCEEECCCSSCEEEEEECCGGGC--------------SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred EEEEeecCCCceeEEEeCcCCCC--------------cEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence 56678899999999999987 5 6899999999999999965532 24667899999999999997
Q ss_pred -------------CCEEEEEEcCCeEEEEECCCCc----eEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCc
Q psy307 448 -------------GTNFISAGYDRYLKLWDTESGE----CISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHS 510 (1019)
Q Consensus 448 -------------g~~l~S~s~Dg~I~lWDl~t~~----~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~ 510 (1019)
+++|++|+.|++|++||++++. +...+. .|...
T Consensus 157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~------------------------------~H~~~ 206 (297)
T 2pm7_B 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE------------------------------GHSDW 206 (297)
T ss_dssp C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC------------------------------CCSSC
T ss_pred cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec------------------------------CCCCc
Confidence 5789999999999999998765 222232 34456
Q ss_pred ccEEEEcCC---CCEEEEEecCCeEEEEEccCcccccceeEE--eccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy307 511 MPAVTSSPN---NKWLACQSMDNKILIFSALNRFKLNRKKTF--EGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWK 585 (1019)
Q Consensus 511 i~~v~~spd---g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l--~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~ 585 (1019)
|.+++|+|+ +.+|++++.|++|++||+...........+ .+|. ..|.+++|+|+|++|++|+.||+|+||+..
T Consensus 207 V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 207 VRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP--DVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCS--SCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred eEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCC--CcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 777777777 489999999999999999764221112223 2343 679999999999999999999999999976
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=288.63 Aligned_cols=259 Identities=23% Similarity=0.466 Sum_probs=223.5
Q ss_pred CCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEE
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRT 374 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~ 374 (1019)
.++|+.+++++.|+.|++|+... .+.+.++.+|.+.|++++|++ .+|++|+.||+|++||+ ..++++..
T Consensus 126 ~~~g~~l~sg~~dg~i~vwd~~~-------~~~~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i~vwd~-~~~~~~~~ 194 (445)
T 2ovr_B 126 QFCGNRIVSGSDDNTLKVWSAVT-------GKCLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNA-ETGECIHT 194 (445)
T ss_dssp EEETTEEEEEETTSCEEEEETTT-------CCEEEECCCCSSCEEEEEEET---TEEEEEETTSCEEEEET-TTTEEEEE
T ss_pred EEcCCEEEEEECCCcEEEEECCC-------CcEEEEEcCCCCCEEEEEecC---CEEEEEeCCCeEEEEEC-CcCcEEEE
Confidence 45689999999999999998763 356889999999999999974 59999999999999999 55688899
Q ss_pred ecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEE
Q psy307 375 YYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISA 454 (1019)
Q Consensus 375 ~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~ 454 (1019)
+.+|...|.++.|++ ..+++|+.||.|++||+ ..++++..+.+|...|.+++| +++.++++
T Consensus 195 ~~~h~~~v~~~~~~~----------------~~l~s~s~dg~i~~wd~-~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~ 255 (445)
T 2ovr_B 195 LYGHTSTVRCMHLHE----------------KRVVSGSRDATLRVWDI-ETGQCLHVLMGHVAAVRCVQY--DGRRVVSG 255 (445)
T ss_dssp ECCCSSCEEEEEEET----------------TEEEEEETTSEEEEEES-SSCCEEEEEECCSSCEEEEEE--CSSCEEEE
T ss_pred ECCCCCcEEEEEecC----------------CEEEEEeCCCEEEEEEC-CCCcEEEEEcCCcccEEEEEE--CCCEEEEE
Confidence 999999999998853 57999999999999999 567788889999999999999 78899999
Q ss_pred EcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEE
Q psy307 455 GYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILI 534 (1019)
Q Consensus 455 s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~i 534 (1019)
+.||.|++||+++++++..+..+ ...+.++++ ++.++++++.||.|++
T Consensus 256 ~~dg~i~iwd~~~~~~~~~~~~~------------------------------~~~v~~~~~--~~~~l~~~~~d~~i~i 303 (445)
T 2ovr_B 256 AYDFMVKVWDPETETCLHTLQGH------------------------------TNRVYSLQF--DGIHVVSGSLDTSIRV 303 (445)
T ss_dssp ETTSCEEEEEGGGTEEEEEECCC------------------------------SSCEEEEEE--CSSEEEEEETTSCEEE
T ss_pred cCCCEEEEEECCCCcEeEEecCC------------------------------CCceEEEEE--CCCEEEEEeCCCeEEE
Confidence 99999999999998887766533 233445555 7889999999999999
Q ss_pred EEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec---cCCCEEEEEEcCCCCc
Q psy307 535 FSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA---HDGVCISTLWHPHEPS 611 (1019)
Q Consensus 535 wd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~---h~~~V~sl~~sp~~~~ 611 (1019)
||+.++ .....+.+|. ..+.++.+ ++.++++|+.||.|++||+.+++.+..+.+ |...|.+++|++ .
T Consensus 304 ~d~~~~---~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~ 373 (445)
T 2ovr_B 304 WDVETG---NCIHTLTGHQ--SLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---N 373 (445)
T ss_dssp EETTTC---CEEEEECCCC--SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---S
T ss_pred EECCCC---CEEEEEcCCc--ccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---C
Confidence 999887 4456777776 56777776 577999999999999999999999999986 888999999963 5
Q ss_pred EEEEEeCCCcEEEE
Q psy307 612 KVVTAGWDAATAKV 625 (1019)
Q Consensus 612 ~l~s~s~Dg~I~iw 625 (1019)
++++++.||.|++|
T Consensus 374 ~l~s~~~dg~v~iw 387 (445)
T 2ovr_B 374 FVITSSDDGTVKLW 387 (445)
T ss_dssp EEEEEETTSEEEEE
T ss_pred EEEEEeCCCeEEEE
Confidence 89999999999776
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-29 Score=290.10 Aligned_cols=277 Identities=19% Similarity=0.229 Sum_probs=224.2
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.+.++|+.+++++.|+.|++|+.. ..+.+..+.+|.+.|++++|+|+ +.+|++|+.||.|++||+ ..++++
T Consensus 104 ~~~~~~~~l~~~~~dg~i~iwd~~-------~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~-~~~~~~ 174 (420)
T 3vl1_A 104 TAKLQMRRFILGTTEGDIKVLDSN-------FNLQREIDQAHVSEITKLKFFPS-GEALISSSQDMQLKIWSV-KDGSNP 174 (420)
T ss_dssp EECSSSCEEEEEETTSCEEEECTT-------SCEEEEETTSSSSCEEEEEECTT-SSEEEEEETTSEEEEEET-TTCCCC
T ss_pred EEecCCCEEEEEECCCCEEEEeCC-------CcceeeecccccCccEEEEECCC-CCEEEEEeCCCeEEEEeC-CCCcCc
Confidence 356789999999999999999865 23567778899999999999996 789999999999999999 455677
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcc---ccccEeE--------
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG---HRQAVRD-------- 441 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~---H~~~V~s-------- 441 (1019)
..+.+|...|.+++|+|++ .+|++|+.||.|++||+ ..++.+..+.. |...|.+
T Consensus 175 ~~~~~h~~~v~~~~~~~~~--------------~~l~s~~~d~~v~iwd~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 239 (420)
T 3vl1_A 175 RTLIGHRATVTDIAIIDRG--------------RNVLSASLDGTIRLWEC-GTGTTIHTFNRKENPHDGVNSIALFVGTD 239 (420)
T ss_dssp EEEECCSSCEEEEEEETTT--------------TEEEEEETTSCEEEEET-TTTEEEEEECBTTBTTCCEEEEEEEECCC
T ss_pred eEEcCCCCcEEEEEEcCCC--------------CEEEEEcCCCcEEEeEC-CCCceeEEeecCCCCCCCccEEEEecCCc
Confidence 8889999999999999998 68999999999999999 55677777764 3344444
Q ss_pred -------------EEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCC
Q psy307 442 -------------ICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTM 508 (1019)
Q Consensus 442 -------------l~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~ 508 (1019)
++|+|++++|++++.||.|++||+++++.+..+.. .+.
T Consensus 240 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------------------------~~~ 290 (420)
T 3vl1_A 240 RQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS-----------------------------KFT 290 (420)
T ss_dssp SSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC-----------------------------TTS
T ss_pred ceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc-----------------------------ccC
Confidence 45578899999999999999999998886655432 233
Q ss_pred CcccEEEEcCCCC-EEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy307 509 HSMPAVTSSPNNK-WLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTT 587 (1019)
Q Consensus 509 ~~i~~v~~spdg~-~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~ 587 (1019)
..+.+++|+|++. +|++|+.||.|++||+.++.. ....+.+|. ...+.++. ++++++|++|+.||.|++||+...
T Consensus 291 ~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~~~-~~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 291 CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC--PVGEFLINE-GTPINNVY-FAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--CSEEEEEST-TSCEEEEE-EETTEEEEEETTTEEEEEEEECCT
T ss_pred CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC--chhhhhccC-CCCceEEE-eCCCCEEEEecCCccEEEEeccCC
Confidence 5677888888888 999999999999999987632 245565543 25677775 457889999999999999998773
Q ss_pred ---------ceeeeeeccCCCEEEEEEcCCCCc--EEEEEeCCCcEEEEe
Q psy307 588 ---------KLFKKWKAHDGVCISTLWHPHEPS--KVVTAGWDAATAKVQ 626 (1019)
Q Consensus 588 ---------~~l~~l~~h~~~V~sl~~sp~~~~--~l~s~s~Dg~I~iww 626 (1019)
.....+.+|.+.|.+++|+|++.. .++++|.+|.+.+|.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 367 ESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp TCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred CCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence 223345678889999999999831 677778888887774
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-30 Score=297.80 Aligned_cols=281 Identities=11% Similarity=0.176 Sum_probs=230.0
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc---
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER--- 369 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~--- 369 (1019)
.++++|+.++++..|+.|++|+...... ..+.+..+.+|.+.|++++|+|+++.+|++|+.||.|++||+....
T Consensus 74 ~~s~~~~~l~~~~~dg~v~vw~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 74 DWSHNNKIIAGALDNGSLELYSTNEANN---AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp EECSSSSCEEEEESSSCEEEECCSSTTS---CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCT
T ss_pred EECCCCCeEEEEccCCeEEEeecccccc---cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 3577899999999999999998764221 2347889999999999999999768999999999999999996543
Q ss_pred ---EE--EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccc------ccc
Q psy307 370 ---RC--VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGH------RQA 438 (1019)
Q Consensus 370 ---~~--~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H------~~~ 438 (1019)
.. ...+.+|...|.+++|+|++. .+|++++.||.|++||+ .....+..+..| ...
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------~~l~~~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~ 216 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSLA-------------HVFASAGSSNFASIWDL-KAKKEVIHLSYTSPNSGIKQQ 216 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSCT-------------TEEEEESSSSCEEEEET-TTTEEEEEECCCCCSSCCCCC
T ss_pred ccccccccccccCCCCCeeEEEeCCCCC-------------cEEEEEcCCCCEEEEEC-CCCCcceEEeccccccccCCc
Confidence 22 223467899999999998842 78999999999999999 556777777776 789
Q ss_pred EeEEEEecCC-CEEEEEEcCC---eEEEEECCCCc-eEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccE
Q psy307 439 VRDICFNNTG-TNFISAGYDR---YLKLWDTESGE-CISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPA 513 (1019)
Q Consensus 439 V~sl~fspdg-~~l~S~s~Dg---~I~lWDl~t~~-~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~ 513 (1019)
|.+++|+|++ ..+++++.|+ .|++||++++. ++..+. ..+...+.+
T Consensus 217 v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~-----------------------------~~~~~~v~~ 267 (416)
T 2pm9_A 217 LSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN-----------------------------QGHQKGILS 267 (416)
T ss_dssp EEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC-----------------------------SCCSSCEEE
T ss_pred eEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee-----------------------------cCccCceeE
Confidence 9999999997 5899999999 99999998763 222221 134466788
Q ss_pred EEEcC-CCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceee
Q psy307 514 VTSSP-NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM-SYLISGDADGKCYIWDWKTTKLFK 591 (1019)
Q Consensus 514 v~~sp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg-~~Lasgs~DG~I~IWDl~t~~~l~ 591 (1019)
++|+| ++.+|++++.||.|++||+.++ ..+..+.+|. ..|.+++|+|++ .+|++++.||.|+|||+.++....
T Consensus 268 ~~~s~~~~~~l~s~~~dg~v~~wd~~~~---~~~~~~~~~~--~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 268 LDWCHQDEHLLLSSGRDNTVLLWNPESA---EQLSQFPARG--NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp EEECSSCSSCEEEEESSSEEEEECSSSC---CEEEEEECSS--SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred EEeCCCCCCeEEEEeCCCCEEEeeCCCC---ccceeecCCC--CceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 88898 8999999999999999999887 4457777887 679999999999 899999999999999998776433
Q ss_pred eeec-----------------------------------cCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 592 KWKA-----------------------------------HDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 592 ~l~~-----------------------------------h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.... |..++.+++|+|+| .+|++++.||+|++|
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~la~~~~d~~v~~w 410 (416)
T 2pm9_A 343 DEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGG-KLVQITPDGKGVSIT 410 (416)
T ss_dssp CC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTT-EEECBCTTSSCBCCB
T ss_pred ccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCC-eEEEEeCCCCeEEEE
Confidence 2211 66778899999998 799999999999665
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-29 Score=319.00 Aligned_cols=413 Identities=10% Similarity=0.021 Sum_probs=265.0
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccce-------eeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEec
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQV-------HTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEV 365 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i-------~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl 365 (1019)
.++++|+.++++..|+.|++|+...... .+ ..+ ..+++|.+.|++++|+|+++.+|++|+.||.| +||+
T Consensus 105 ~~sp~g~~l~sgs~dg~V~lwd~~~~~~--~~-~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~ 180 (902)
T 2oaj_A 105 DTDASLDWMLIGLQNGSMIVYDIDRDQL--SS-FKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSL 180 (902)
T ss_dssp ECCTTCSEEEEEETTSCEEEEETTTTEE--EE-EEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEET
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCcc--cc-ceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEEC
Confidence 4678999999999999999999864321 00 001 45689999999999999767899999999999 9999
Q ss_pred CCCcEEEEEeccc------------------CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe
Q psy307 366 YKERRCVRTYYGH------------------RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR 427 (1019)
Q Consensus 366 ~~~~~~~~~~~gh------------------~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~ 427 (1019)
...+++..+.+| ...|.+++|+|+| .+|++|+.||+|++||+.. ++
T Consensus 181 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg--------------~~lasgs~Dg~i~lWd~~~-g~ 244 (902)
T 2oaj_A 181 -VENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS--------------LHIITIHEDNSLVFWDANS-GH 244 (902)
T ss_dssp -TTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS--------------SEEEEEETTCCEEEEETTT-CC
T ss_pred -CCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC--------------CEEEEEECCCeEEEEECCC-Cc
Confidence 456777777766 4679999999988 6999999999999999955 44
Q ss_pred EEEE--E---cc-------------ccccEeEEEEec----CC-CEEEEEEcCC-----eEEEEE---------------
Q psy307 428 CVRT--Y---YG-------------HRQAVRDICFNN----TG-TNFISAGYDR-----YLKLWD--------------- 464 (1019)
Q Consensus 428 ~~~~--l---~~-------------H~~~V~sl~fsp----dg-~~l~S~s~Dg-----~I~lWD--------------- 464 (1019)
++.. + .. |...|.+++|++ ++ ..+++|+.|. .|.+|+
T Consensus 245 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~ 324 (902)
T 2oaj_A 245 MIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGM 324 (902)
T ss_dssp EEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHH
T ss_pred EEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhh
Confidence 4432 2 12 345799999954 33 3456665542 555555
Q ss_pred --------------------------------------------------------CCCCceEEE-------Ee-cCCce
Q psy307 465 --------------------------------------------------------TESGECISR-------FT-SRKVA 480 (1019)
Q Consensus 465 --------------------------------------------------------l~t~~~i~~-------~~-~~~~v 480 (1019)
+.+|..... +. ++..+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v 404 (902)
T 2oaj_A 325 KNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLA 404 (902)
T ss_dssp HHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBE
T ss_pred hhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCe
Confidence 322211100 00 00122
Q ss_pred EEEEE----------------------------------ecCCCeeee----------ccCCCc----eee--------e
Q psy307 481 YCVKF----------------------------------HPDEDKQHL----------DIPVDM----KYI--------A 504 (1019)
Q Consensus 481 ~~v~~----------------------------------~p~~~~~~~----------~~~~~~----~~i--------~ 504 (1019)
.++++ +|++..++. +..... ..+ .
T Consensus 405 ~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~ 484 (902)
T 2oaj_A 405 TTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLN 484 (902)
T ss_dssp EEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTT
T ss_pred eEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcC
Confidence 23332 233222221 111110 000 0
Q ss_pred CCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCccc------------------------------------------
Q psy307 505 DPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFK------------------------------------------ 542 (1019)
Q Consensus 505 ~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~------------------------------------------ 542 (1019)
..+...|.+++|+|+|++||+|+.||+|++|++.++..
T Consensus 485 ~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 564 (902)
T 2oaj_A 485 KAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQG 564 (902)
T ss_dssp CSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEE
T ss_pred CCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCc
Confidence 14556799999999999999999999999999976521
Q ss_pred ccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee-----eee-ccCCCEEEEEEc-----CCC--
Q psy307 543 LNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFK-----KWK-AHDGVCISTLWH-----PHE-- 609 (1019)
Q Consensus 543 ~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~-----~l~-~h~~~V~sl~~s-----p~~-- 609 (1019)
..++..+.+|. +.|++++||||| +||+|+.||+|+|||+.++..+. .+. +|.+.|++++|+ |||
T Consensus 565 ~~~~~~l~~h~--~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~ 641 (902)
T 2oaj_A 565 FMPSTAVHANK--GKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYS 641 (902)
T ss_dssp EEEEEEECCCS--CSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSE
T ss_pred cceeEEEEcCC--CcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCc
Confidence 12356677787 789999999999 99999999999999998877654 343 889999999999 886
Q ss_pred CcEEEEEeCCCcEEEEecc---ceeeeeeecccc--------CCceeecc--cccccchhhhhhhccccc-CCCceeEEE
Q psy307 610 PSKVVTAGWDAATAKVQDA---NIVKIAVEMEKQ--------VPQLYQFN--QTLTLSSIIQEICSGWSL-SDSEQYALQ 675 (1019)
Q Consensus 610 ~~~l~s~s~Dg~I~iwwd~---~i~ki~~e~~~~--------v~ql~~l~--~~~~LSs~~~~~~~~wsl-s~~e~~al~ 675 (1019)
+.+|++|+.||+|++|. . ..++......++ +..+..++ ......+. ...+....- .....+++.
T Consensus 642 ~~~l~sgs~D~tv~~wd-~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~-~~~~~~l~~~~~~~~~~l~ 719 (902)
T 2oaj_A 642 SILMVCGTDMGEVITYK-ILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLAT-IPKMQNLSKGLCIPGIVLI 719 (902)
T ss_dssp EEEEEEEETTSEEEEEE-EEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCB-HHHHHGGGGTCCCCEEEEE
T ss_pred ceEEEEEecCCcEEEEE-EecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCC-HHHHhccCCCCCCCeEEEE
Confidence 37999999999997764 3 222222222222 11121121 00000000 000111110 012223333
Q ss_pred eecCCCceEEecccccccc---C--CceEEE---E------ecCCccHHHHHhhcCCCchhhHHHHHHhhhe
Q psy307 676 FSETNNKNYITEKNRNEIK---N--GSVLRL---A------FSASKTADDILSKLSDKNASLEEKTAAEFYC 733 (1019)
Q Consensus 676 ~sd~~~~~~it~~~~~~I~---n--g~Vl~L---a------fSPd~~a~~Ilt~~~d~~i~lw~~~~~e~~~ 733 (1019)
.+ ....+++.....+.++ . ..+..+ . +++++ ..|++..+||+|++|..+..|-+.
T Consensus 720 ~~-~~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~--~~l~~~~~~g~i~~~s~p~l~~~~ 788 (902)
T 2oaj_A 720 TG-FDDIRLITLGKSKSTHKGFKYPLAATGLSYISTVEKNNDRKNL--TVIITLEINGHLRVFTIPDFKEQM 788 (902)
T ss_dssp EC-SSEEEEECTTCCCEEEEECSSCEEEEEEEEEEEECSSSCEEEE--EEEEEEETTSEEEEEETTTCCEEE
T ss_pred Ee-ccceEEEeCccccceeeEcccceeeeEEEEEEeccccccccCc--eEEEEEeCCCcEEEEECcchHHHh
Confidence 33 3455666665554442 2 233343 4 56766 678999999999999976665444
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-28 Score=269.09 Aligned_cols=272 Identities=21% Similarity=0.283 Sum_probs=217.9
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceee--eccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHT--WEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC 371 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~--l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~ 371 (1019)
++.++ .++. +.|++|++|+... ++++++ +.+|...|++++|+|+ +.+|++|+.||+|++||+ ..+++
T Consensus 33 WS~~~-~lAv-g~D~tV~iWd~~t-------g~~~~~~~~~~~~~~V~~v~~~~~-~~~l~sgs~Dg~v~iw~~-~~~~~ 101 (318)
T 4ggc_A 33 WSSGN-VLAV-ALDNSVYLWSASS-------GDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDV-QQQKR 101 (318)
T ss_dssp ECTTS-EEEE-EETTEEEEEETTT-------CCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSEEEEEET-TTTEE
T ss_pred ECCCC-EEEE-EeCCEEEEEECCC-------CCEEEEEEecCCCCeEEEEEECCC-CCEEEEEECCCcEEEeec-CCcee
Confidence 34343 5555 4699999998763 334444 4578889999999996 889999999999999999 56788
Q ss_pred EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEE
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNF 451 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l 451 (1019)
+..+.+|...+.++.+.+ .++++|+.++.+++|+.......+..+.+|...+.++.+++++++|
T Consensus 102 ~~~~~~h~~~~~~~~~~~----------------~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 165 (318)
T 4ggc_A 102 LRNMTSHSARVGSLSWNS----------------YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHL 165 (318)
T ss_dssp EEEEECCSSCEEEEEEET----------------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred EEEecCccceEEEeecCC----------------CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEE
Confidence 999999999888766543 5899999999999999988888999999999999999999999999
Q ss_pred EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCE---EEEEec
Q psy307 452 ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKW---LACQSM 528 (1019)
Q Consensus 452 ~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~---Lasgs~ 528 (1019)
++++.|++|++||+++++..... ......+...+.++.++|++.. +++++.
T Consensus 166 ~s~~~d~~i~iwd~~~~~~~~~~--------------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 219 (318)
T 4ggc_A 166 ASGGNDNLVNVWPSAPGEGGWVP--------------------------LQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 219 (318)
T ss_dssp EEEETTSCEEEEESSCBTTBSCC--------------------------SEEECCCCSCEEEEEECTTSTTEEEEEECTT
T ss_pred EEEecCcceeEEECCCCcccccc--------------------------eeeecccCCceEEEEecCCCCcEEEEEecCC
Confidence 99999999999999876532111 0111223344556666665543 346678
Q ss_pred CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeeeeeccCCCEEEEEEc
Q psy307 529 DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD--ADGKCYIWDWKTTKLFKKWKAHDGVCISTLWH 606 (1019)
Q Consensus 529 Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs--~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~s 606 (1019)
++.|++||...... .... .+. ..+..+.|+|++..+++++ .||.|+|||+.+++++.++.+|.+.|++++|+
T Consensus 220 ~~~i~lwd~~~~~~---~~~~-~~~--~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~s 293 (318)
T 4ggc_A 220 DRHIRIWNVCSGAC---LSAV-DAH--SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS 293 (318)
T ss_dssp TCEEEEEETTTCCE---EEEE-ECS--SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred CCEEEEEecccccc---cccc-cce--eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 89999999887532 2222 232 5688999999999887654 79999999999999999999999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEE
Q psy307 607 PHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 607 p~~~~~l~s~s~Dg~I~iw 625 (1019)
|++ .+|+|||.||+|++|
T Consensus 294 pdg-~~l~S~s~D~~v~iW 311 (318)
T 4ggc_A 294 PDG-ATVASAAADETLRLW 311 (318)
T ss_dssp TTS-SCEEEEETTTEEEEE
T ss_pred CCC-CEEEEEecCCeEEEE
Confidence 998 689999999999877
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-29 Score=287.50 Aligned_cols=273 Identities=15% Similarity=0.195 Sum_probs=219.3
Q ss_pred eeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc------EEEEE
Q psy307 301 FLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER------RCVRT 374 (1019)
Q Consensus 301 ~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~------~~~~~ 374 (1019)
+++++.|+.|.+|+...... ....+..+.+|.+.|++++|+|.++.+|++|+.||.|+|||+.... .++..
T Consensus 50 ~~~~~~~g~i~v~~~~~~~~---~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~ 126 (402)
T 2aq5_A 50 ICEASGGGAFLVLPLGKTGR---VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVIT 126 (402)
T ss_dssp EBCCSSSCCEEEEETTCCEE---CCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEE
T ss_pred EEEEcCCCEEEEEECccCCC---CCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEE
Confidence 44578899999998754322 1245667899999999999999658999999999999999996543 56788
Q ss_pred ecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEE--ccccccEeEEEEecCCCEEE
Q psy307 375 YYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY--YGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 375 ~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l--~~H~~~V~sl~fspdg~~l~ 452 (1019)
+.+|...|.+++|+|++. .+|++|+.||.|++||+ ..+..+..+ .+|...|.+++|+|++++|+
T Consensus 127 ~~~h~~~v~~~~~~p~~~-------------~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 127 LEGHTKRVGIVAWHPTAQ-------------NVLLSAGCDNVILVWDV-GTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp EECCSSCEEEEEECSSBT-------------TEEEEEETTSCEEEEET-TTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred ecCCCCeEEEEEECcCCC-------------CEEEEEcCCCEEEEEEC-CCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 899999999999999873 58999999999999999 566778888 89999999999999999999
Q ss_pred EEEcCCeEEEEECCCCceEEEE-ecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE---ec
Q psy307 453 SAGYDRYLKLWDTESGECISRF-TSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ---SM 528 (1019)
Q Consensus 453 S~s~Dg~I~lWDl~t~~~i~~~-~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg---s~ 528 (1019)
+++.||.|++||+++++++..+ ..+. ...+.+++|+|++.+|++| +.
T Consensus 193 ~~~~d~~i~iwd~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~l~~g~~~~~ 243 (402)
T 2aq5_A 193 TSCRDKRVRVIEPRKGTVVAEKDRPHE-----------------------------GTRPVHAVFVSEGKILTTGFSRMS 243 (402)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECSSC-----------------------------SSSCCEEEECSTTEEEEEEECTTC
T ss_pred EEecCCcEEEEeCCCCceeeeeccCCC-----------------------------CCcceEEEEcCCCcEEEEeccCCC
Confidence 9999999999999998877666 2221 1236678889999999999 78
Q ss_pred CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCce-eeeeec--cCCCEEEEE
Q psy307 529 DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLI-SGDADGKCYIWDWKTTKL-FKKWKA--HDGVCISTL 604 (1019)
Q Consensus 529 Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~La-sgs~DG~I~IWDl~t~~~-l~~l~~--h~~~V~sl~ 604 (1019)
|+.|++||+.+.........+ .+. ..+.+++|+|+|++|+ +|+.||.|++||+.+++. +..+.. |.+.|.+++
T Consensus 244 d~~i~iwd~~~~~~~~~~~~~-~~~--~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~ 320 (402)
T 2aq5_A 244 ERQVALWDTKHLEEPLSLQEL-DTS--SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMG 320 (402)
T ss_dssp CEEEEEEETTBCSSCSEEEEC-CCC--SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEE
T ss_pred CceEEEEcCccccCCceEEec-cCC--CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceE
Confidence 999999999876432112222 233 5689999999999986 556799999999999884 555554 458999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEE
Q psy307 605 WHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 605 ~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
|+|++ .+++ +.|+.+++|
T Consensus 321 ~sp~~-~~~~--s~~~~~~~~ 338 (402)
T 2aq5_A 321 YMPKR-GLEV--NKCEIARFY 338 (402)
T ss_dssp ECCGG-GSCG--GGTEEEEEE
T ss_pred Eeccc-ccce--ecceeEEEE
Confidence 99998 4554 355666554
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=296.31 Aligned_cols=282 Identities=13% Similarity=0.094 Sum_probs=213.5
Q ss_pred CCC-CCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 294 TDY-QGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 294 ~~~-~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
+++ .++.+++|+.|+.|+||+..... ...+..+.||.+.|++|+|+|.++.+|+||+.||+|+|||+.. ....
T Consensus 127 ~~P~~~~~lasGs~dg~i~lWd~~~~~-----~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~-~~~~ 200 (435)
T 4e54_B 127 WHPTHPSTVAVGSKGGDIMLWNFGIKD-----KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NILR 200 (435)
T ss_dssp ECSSCTTCEEEEETTSCEEEECSSCCS-----CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS-CEEE
T ss_pred EeCCCCCEEEEEeCCCEEEEEECCCCC-----ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC-Ccee
Confidence 444 56789999999999999876432 2345667899999999999997789999999999999999943 3322
Q ss_pred EEec--ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCC-
Q psy307 373 RTYY--GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT- 449 (1019)
Q Consensus 373 ~~~~--gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~- 449 (1019)
.... .+...+.+++|+|++ .+|++|+.||.|++||+. ++.+..+.+|...|.+++|+|++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--------------~~l~~g~~dg~i~~wd~~--~~~~~~~~~h~~~v~~v~~~p~~~~ 264 (435)
T 4e54_B 201 VFASSDTINIWFCSLDVSASS--------------RMVVTGDNVGNVILLNMD--GKELWNLRMHKKKVTHVALNPCCDW 264 (435)
T ss_dssp EEECCSSCSCCCCCEEEETTT--------------TEEEEECSSSBEEEEESS--SCBCCCSBCCSSCEEEEEECTTCSS
T ss_pred EEeccCCCCccEEEEEECCCC--------------CEEEEEeCCCcEeeeccC--cceeEEEecccceEEeeeecCCCce
Confidence 2222 334467889999888 699999999999999983 456677889999999999999986
Q ss_pred EEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC
Q psy307 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD 529 (1019)
Q Consensus 450 ~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D 529 (1019)
.|++|+.|++|+|||+++++....+. ....|...|.+++|+|+|.+|++++.|
T Consensus 265 ~~~s~s~d~~v~iwd~~~~~~~~~~~---------------------------~~~~h~~~v~~~~~spdg~~l~s~~~D 317 (435)
T 4e54_B 265 FLATASVDQTVKIWDLRQVRGKASFL---------------------------YSLPHRHPVNAACFSPDGARLLTTDQK 317 (435)
T ss_dssp EEEEEETTSBCCEEETTTCCSSSCCS---------------------------BCCBCSSCEEECCBCTTSSEEEEEESS
T ss_pred EEEEecCcceeeEEecccccccceEE---------------------------EeeeccccccceeECCCCCeeEEEcCC
Confidence 68899999999999998765322111 112355678899999999999999999
Q ss_pred CeEEEEEccCcccccceeEEeccccc----cceEEEEEcCCCCEEEEEe------------CCCeEEEEeCCCCceeeee
Q psy307 530 NKILIFSALNRFKLNRKKTFEGHMVA----GYACSLDFSPDMSYLISGD------------ADGKCYIWDWKTTKLFKKW 593 (1019)
Q Consensus 530 g~I~iwd~~~~~~~~~~~~l~gh~~~----~~V~~v~fspdg~~Lasgs------------~DG~I~IWDl~t~~~l~~l 593 (1019)
|.|++||+.++.. ...+.+|... ..+..+.|+|++.++++++ .++.|++||..+++.+..+
T Consensus 318 ~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l 394 (435)
T 4e54_B 318 SEIRVYSASQWDC---PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL 394 (435)
T ss_dssp SCEEEEESSSSSS---EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE
T ss_pred CEEEEEECCCCcc---ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE
Confidence 9999999987633 2334333211 1233456667666666554 3457999999999998887
Q ss_pred e-ccCCCEEEE-EEcCCCCcEEEEEeCCCcEEEEeccce
Q psy307 594 K-AHDGVCIST-LWHPHEPSKVVTAGWDAATAKVQDANI 630 (1019)
Q Consensus 594 ~-~h~~~V~sl-~~sp~~~~~l~s~s~Dg~I~iwwd~~i 630 (1019)
. +|...|.++ +|+|++ .+|++|+ |++|++ |+..-
T Consensus 395 ~~~~~~~v~s~~~fspdg-~~lasg~-d~~i~i-W~~~~ 430 (435)
T 4e54_B 395 YDPESSGISSLNEFNPMG-DTLASAM-GYHILI-WSQQE 430 (435)
T ss_dssp CCSSCCCCCCEEEECTTS-SCEEEEC-SSEEEE-CCCC-
T ss_pred eCCCCCcEEEEEEECCCC-CEEEEEc-CCcEEE-EECCc
Confidence 5 677888887 699998 5777765 788855 55543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-28 Score=283.12 Aligned_cols=273 Identities=22% Similarity=0.359 Sum_probs=228.5
Q ss_pred CCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEE
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRT 374 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~ 374 (1019)
..+++.+++++.|+.|++|+... .+.+.++.+|.+.|++++|+|+ + +|++|+.||+|++||+ ..++++..
T Consensus 129 ~~~~~~l~sgs~dg~i~vwd~~~-------~~~~~~~~~h~~~V~~l~~~~~-~-~l~s~s~dg~i~vwd~-~~~~~~~~ 198 (464)
T 3v7d_B 129 QFEDNYVITGADDKMIRVYDSIN-------KKFLLQLSGHDGGVWALKYAHG-G-ILVSGSTDRTVRVWDI-KKGCCTHV 198 (464)
T ss_dssp EEETTEEEEEETTSCEEEEETTT-------TEEEEEECCCSSCEEEEEECST-T-EEEEEETTSCEEEEET-TTTEEEEE
T ss_pred EECCCEEEEEcCCCcEEEEECCC-------CcEEEEEeCCCcCEEEEEEcCC-C-EEEEEeCCCCEEEEEC-CCCcEEEE
Confidence 34678999999999999998753 4578899999999999999996 3 9999999999999999 55678899
Q ss_pred ecccCccEeEEEEcC--CCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe----------------------EEE
Q psy307 375 YYGHRQAVRDICFNN--TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR----------------------CVR 430 (1019)
Q Consensus 375 ~~gh~~~V~~i~fsp--dg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~----------------------~~~ 430 (1019)
+.+|...|.+++|++ ++ .+|++|+.||.|++||+..... ...
T Consensus 199 ~~~h~~~v~~l~~~~~~~~--------------~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (464)
T 3v7d_B 199 FEGHNSTVRCLDIVEYKNI--------------KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG 264 (464)
T ss_dssp ECCCSSCEEEEEEEESSSC--------------EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEE
T ss_pred ECCCCCccEEEEEecCCCC--------------CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEE
Confidence 999999999999985 44 7899999999999999965432 366
Q ss_pred EEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCc
Q psy307 431 TYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHS 510 (1019)
Q Consensus 431 ~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~ 510 (1019)
.+.+|...|.++ +++++++++++.||+|++||+++++++..+.. +...
T Consensus 265 ~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~------------------------------~~~~ 312 (464)
T 3v7d_B 265 VLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG------------------------------HTDR 312 (464)
T ss_dssp EECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECC------------------------------CSSC
T ss_pred EccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecC------------------------------CCCC
Confidence 788999999877 56889999999999999999999988776643 2345
Q ss_pred ccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q psy307 511 MPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLF 590 (1019)
Q Consensus 511 i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l 590 (1019)
+.+++++|+++++++|+.||.|++||+.++ .....+.+|. ..|.+++|+ +.+|++|+.||.|++||+.++...
T Consensus 313 v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~--~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~ 385 (464)
T 3v7d_B 313 IYSTIYDHERKRCISASMDTTIRIWDLENG---ELMYTLQGHT--ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK 385 (464)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEETTTT---EEEEEECCCS--SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCC---cEEEEEeCCC--CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCcee
Confidence 677888889999999999999999999887 4557788887 779999997 689999999999999999998776
Q ss_pred eeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeee
Q psy307 591 KKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIA 634 (1019)
Q Consensus 591 ~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~ 634 (1019)
.... |...+..++|+|++ .++++++ ||.|++| +....+..
T Consensus 386 ~~~~-~~~~~~~~~~~~~~-~~l~~~~-dg~i~iw-d~~~g~~~ 425 (464)
T 3v7d_B 386 FSYH-HTNLSAITTFYVSD-NILVSGS-ENQFNIY-NLRSGKLV 425 (464)
T ss_dssp EEEE-CTTCCCEEEEEECS-SEEEEEE-TTEEEEE-ETTTCCEE
T ss_pred eeec-CCCCccEEEEEeCC-CEEEEec-CCeEEEE-ECCCCcEE
Confidence 6553 56677888999988 5888887 8988655 55444443
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=277.41 Aligned_cols=273 Identities=15% Similarity=0.214 Sum_probs=226.9
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc--EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER--RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~--~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
+....+|.+.|++++|+|+ +.+|++|+.||.|+||++.... .....+.+|...|.+++|+|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------- 68 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-------------- 68 (342)
T ss_dssp EECSSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS--------------
T ss_pred eecccCCCCcEEEEEEcCC-CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC--------------
Confidence 3445689999999999995 8899999999999999996543 2345566899999999999988
Q ss_pred c-EEEEEeCCCcEEEEEc-cCCCeEEEEEcc--ccccEeEEEEecCCCEEEEEEcCCeEEEEECCC---------CceEE
Q psy307 406 H-LLLSCSMDCRVKLWEV-YKEHRCVRTYYG--HRQAVRDICFNNTGTNFISAGYDRYLKLWDTES---------GECIS 472 (1019)
Q Consensus 406 ~-~L~sgs~Dg~I~IWDl-~~~~~~~~~l~~--H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t---------~~~i~ 472 (1019)
. +|++|+.||.|++||+ .... ...+.+ |...|.+++|+| +..|++++.|+.|++||+++ ++++.
T Consensus 69 ~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (342)
T 1yfq_A 69 DLQIYVGTVQGEILKVDLIGSPS--FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp SEEEEEEETTSCEEEECSSSSSS--EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred CcEEEEEcCCCeEEEEEeccCCc--eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee
Confidence 7 8999999999999998 5543 377788 999999999999 99999999999999999988 77777
Q ss_pred EEecCCceEEEEEecCC--------CeeeeccCC----CceeeeCCCCCcccEEEEcC-CCCEEEEEecCCeEEEEEccC
Q psy307 473 RFTSRKVAYCVKFHPDE--------DKQHLDIPV----DMKYIADPTMHSMPAVTSSP-NNKWLACQSMDNKILIFSALN 539 (1019)
Q Consensus 473 ~~~~~~~v~~v~~~p~~--------~~~~~~~~~----~~~~i~~~~~~~i~~v~~sp-dg~~Lasgs~Dg~I~iwd~~~ 539 (1019)
.+.....+.+++|+|++ ....++... ........+...+.+++|+| +++++++++.||.|++|++..
T Consensus 146 ~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 146 NTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp SSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred EEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcC
Confidence 77777889999999876 111112222 12234445667789999999 999999999999999999976
Q ss_pred cc---cccceeEEecccc-------ccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc-CCCEEEEEEcCC
Q psy307 540 RF---KLNRKKTFEGHMV-------AGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH-DGVCISTLWHPH 608 (1019)
Q Consensus 540 ~~---~~~~~~~l~gh~~-------~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h-~~~V~sl~~sp~ 608 (1019)
.. .......+.+|.. ...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+| .+.|.+++ |+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~ 303 (342)
T 1yfq_A 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CS 303 (342)
T ss_dssp TCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--EC
T ss_pred CCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CC
Confidence 51 0134566777752 247999999999999999999999999999999999999998 99999999 88
Q ss_pred CCcEEEEEeCCCc
Q psy307 609 EPSKVVTAGWDAA 621 (1019)
Q Consensus 609 ~~~~l~s~s~Dg~ 621 (1019)
+ .+|++++.||.
T Consensus 304 ~-~~l~s~s~Dg~ 315 (342)
T 1yfq_A 304 D-NILCLATSDDT 315 (342)
T ss_dssp S-SEEEEEEECTH
T ss_pred C-CeEEEEecCCc
Confidence 7 69999999998
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-28 Score=278.70 Aligned_cols=264 Identities=19% Similarity=0.341 Sum_probs=215.3
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCC------------------CCeEEEEEcCCCCcEEEEe
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHT------------------KGISAIRWFPKSAHLLLSC 354 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~------------------~~V~~i~fspd~g~lLaSg 354 (1019)
.++++|+.++++. ++.+++|+.... +.+..+.+|. ..|++++|+|+ +.+|++|
T Consensus 71 ~fspdg~~la~g~-~~~v~i~~~~~g-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-g~~l~s~ 141 (393)
T 1erj_A 71 KFSNDGEYLATGC-NKTTQVYRVSDG-------SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD-GKFLATG 141 (393)
T ss_dssp EECTTSSEEEEEC-BSCEEEEETTTC-------CEEEEECC-----------------CCCCBEEEEEECTT-SSEEEEE
T ss_pred EECCCCCEEEEEc-CCcEEEEEecCC-------CEEEEecCccccccccccccccccCCCceeEEEEEECCC-CCEEEEE
Confidence 4678999999876 789999987532 3344454443 34999999995 8899999
Q ss_pred eCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcc
Q psy307 355 SMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG 434 (1019)
Q Consensus 355 s~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~ 434 (1019)
+.||.|+|||+ ..++++..+.+|...|.+++|+|++ .+|++|+.|++|++||+ ..+.+...+.
T Consensus 142 ~~d~~i~iwd~-~~~~~~~~~~~h~~~v~~~~~~p~~--------------~~l~s~s~d~~v~iwd~-~~~~~~~~~~- 204 (393)
T 1erj_A 142 AEDRLIRIWDI-ENRKIVMILQGHEQDIYSLDYFPSG--------------DKLVSGSGDRTVRIWDL-RTGQCSLTLS- 204 (393)
T ss_dssp ETTSCEEEEET-TTTEEEEEECCCSSCEEEEEECTTS--------------SEEEEEETTSEEEEEET-TTTEEEEEEE-
T ss_pred cCCCeEEEEEC-CCCcEEEEEccCCCCEEEEEEcCCC--------------CEEEEecCCCcEEEEEC-CCCeeEEEEE-
Confidence 99999999999 5667888999999999999999998 68999999999999999 4555555554
Q ss_pred ccccEeEEEEec-CCCEEEEEEcCCeEEEEECCCCceEEEEe--------cCCceEEEEEecCCCeeeeccCCCce----
Q psy307 435 HRQAVRDICFNN-TGTNFISAGYDRYLKLWDTESGECISRFT--------SRKVAYCVKFHPDEDKQHLDIPVDMK---- 501 (1019)
Q Consensus 435 H~~~V~sl~fsp-dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~--------~~~~v~~v~~~p~~~~~~~~~~~~~~---- 501 (1019)
+...|.+++|+| ++++|++|+.|++|++||++++.++..+. +...+.+++|+|++..++........
T Consensus 205 ~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd 284 (393)
T 1erj_A 205 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284 (393)
T ss_dssp CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 567899999999 89999999999999999999999887762 34678999999998766542221111
Q ss_pred -------------------eeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEE
Q psy307 502 -------------------YIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562 (1019)
Q Consensus 502 -------------------~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~ 562 (1019)
.....|...|.+++++|++.+|++|+.||.|++||+.++ .....+.+|. ..|.+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~---~~~~~l~~h~--~~v~~v~ 359 (393)
T 1erj_A 285 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHR--NSVISVA 359 (393)
T ss_dssp C---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCS--SCEEEEE
T ss_pred CCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC---eEEEEECCCC--CCEEEEE
Confidence 122346667889999999999999999999999999887 3457788887 6799999
Q ss_pred EcC------CCCEEEEEeCCCeEEEEeCCCC
Q psy307 563 FSP------DMSYLISGDADGKCYIWDWKTT 587 (1019)
Q Consensus 563 fsp------dg~~Lasgs~DG~I~IWDl~t~ 587 (1019)
|++ ++.+|++|+.||+|+||++...
T Consensus 360 ~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 360 VANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp ECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred ecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 876 6889999999999999997643
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-28 Score=283.30 Aligned_cols=260 Identities=22% Similarity=0.422 Sum_probs=222.9
Q ss_pred CCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEE
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRT 374 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~ 374 (1019)
..+|+.+++++.|+.|++|+... .+.+.++.+|.+.|++++| ++.+|++|+.||.|++||+ ..++++..
T Consensus 140 ~~d~~~l~~g~~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~-~~~~~~~~ 208 (435)
T 1p22_A 140 QYDDQKIVSGLRDNTIKIWDKNT-------LECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDV-NTGEMLNT 208 (435)
T ss_dssp ECCSSEEEEEESSSCEEEEESSS-------CCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEES-SSCCEEEE
T ss_pred EECCCEEEEEeCCCeEEEEeCCC-------CeEEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEEC-CCCcEEEE
Confidence 34789999999999999998753 4568889999999999998 3679999999999999999 55678889
Q ss_pred ecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe--EEEEEccccccEeEEEEecCCCEEE
Q psy307 375 YYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR--CVRTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 375 ~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~--~~~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
+.+|...|.+++|++ .++++|+.||.|++||+..... ....+.+|...|.+++| ++++++
T Consensus 209 ~~~h~~~v~~l~~~~----------------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~ 270 (435)
T 1p22_A 209 LIHHCEAVLHLRFNN----------------GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIV 270 (435)
T ss_dssp ECCCCSCEEEEECCT----------------TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEE
T ss_pred EcCCCCcEEEEEEcC----------------CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEE
Confidence 999999999998863 4899999999999999965443 34778899999999999 778999
Q ss_pred EEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeE
Q psy307 453 SAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKI 532 (1019)
Q Consensus 453 S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I 532 (1019)
+|+.||+|++||+++++++..+..+. ..+.++.+ ++.++++|+.||.|
T Consensus 271 s~~~dg~i~vwd~~~~~~~~~~~~~~------------------------------~~v~~~~~--~~~~l~~g~~dg~i 318 (435)
T 1p22_A 271 SASGDRTIKVWNTSTCEFVRTLNGHK------------------------------RGIACLQY--RDRLVVSGSSDNTI 318 (435)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCS------------------------------SCEEEEEE--ETTEEEEEETTSCE
T ss_pred EEeCCCeEEEEECCcCcEEEEEcCCC------------------------------CcEEEEEe--CCCEEEEEeCCCeE
Confidence 99999999999999999888776432 23344444 46799999999999
Q ss_pred EEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---------eeeeeeccCCCEEEE
Q psy307 533 LIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK---------LFKKWKAHDGVCIST 603 (1019)
Q Consensus 533 ~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~---------~l~~l~~h~~~V~sl 603 (1019)
++||+.++ .....+.+|. ..|.+++| ++.+|++|+.||.|++||+.++. .+..+.+|.+.|.++
T Consensus 319 ~iwd~~~~---~~~~~~~~h~--~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 391 (435)
T 1p22_A 319 RLWDIECG---ACLRVLEGHE--ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL 391 (435)
T ss_dssp EEEETTTC---CEEEEECCCS--SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred EEEECCCC---CEEEEEeCCc--CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEE
Confidence 99999887 4557788887 67999998 88999999999999999998776 788999999999999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEE
Q psy307 604 LWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 604 ~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+| ++ ..+++++.||+|++|
T Consensus 392 ~~--~~-~~l~s~s~Dg~i~iw 410 (435)
T 1p22_A 392 QF--DE-FQIVSSSHDDTILIW 410 (435)
T ss_dssp EE--CS-SCEEECCSSSEEEEE
T ss_pred Ee--CC-CEEEEEeCCCEEEEE
Confidence 99 44 589999999999776
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=285.17 Aligned_cols=259 Identities=19% Similarity=0.284 Sum_probs=202.2
Q ss_pred cCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc----------EEEEEecccC------------ccEeEEEEcCC
Q psy307 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER----------RCVRTYYGHR------------QAVRDICFNNT 390 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~----------~~~~~~~gh~------------~~V~~i~fspd 390 (1019)
.|.+.|++++|+|+ +.+|++|+.||.|+|||+.... ++...+.+|. ..|.+++|+|+
T Consensus 26 ~~~~~V~~v~~s~~-g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHS-GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECSS-SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECCC-CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 36789999999995 8999999999999999995443 2678889998 88999999887
Q ss_pred CCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe--------------------------------------EEEE-
Q psy307 391 GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR--------------------------------------CVRT- 431 (1019)
Q Consensus 391 g~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~--------------------------------------~~~~- 431 (1019)
+. ..+|++++.||.|++||+..... +...
T Consensus 105 ~~------------~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
T 3dw8_B 105 KN------------AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172 (447)
T ss_dssp CS------------SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred CC------------cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence 62 14899999999999999854221 1112
Q ss_pred EccccccEeEEEEecCCCEEEEEEcCCeEEEEECCC-CceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCc
Q psy307 432 YYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTES-GECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHS 510 (1019)
Q Consensus 432 l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t-~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~ 510 (1019)
..+|...|.+++|+|++++|++| .|++|++||+++ ++++..+... | .....+...
T Consensus 173 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~---------~--------------~~~~~~~~~ 228 (447)
T 3dw8_B 173 ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIK---------P--------------ANMEELTEV 228 (447)
T ss_dssp CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECC---------C--------------SSGGGCCCC
T ss_pred ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecc---------c--------------ccccccCcc
Confidence 36899999999999999999998 899999999984 3333332110 0 012235567
Q ss_pred ccEEEEcCCC-CEEEEEecCCeEEEEEccCccc-ccceeEEeccccc----------cceEEEEEcCCCCEEEEEeCCCe
Q psy307 511 MPAVTSSPNN-KWLACQSMDNKILIFSALNRFK-LNRKKTFEGHMVA----------GYACSLDFSPDMSYLISGDADGK 578 (1019)
Q Consensus 511 i~~v~~spdg-~~Lasgs~Dg~I~iwd~~~~~~-~~~~~~l~gh~~~----------~~V~~v~fspdg~~Lasgs~DG~ 578 (1019)
|.+++|+|++ .+|++|+.||.|++||++++.. ......+.+|... +.|.+++|+|+|++|++++. |.
T Consensus 229 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~ 307 (447)
T 3dw8_B 229 ITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS 307 (447)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE
T ss_pred eEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce
Confidence 8899999998 9999999999999999987642 1124667776520 27999999999999999999 99
Q ss_pred EEEEeCCC-CceeeeeeccCCC---------------EEEEEEcCCCCcEEEEEeCCCcEEEEecccee
Q psy307 579 CYIWDWKT-TKLFKKWKAHDGV---------------CISTLWHPHEPSKVVTAGWDAATAKVQDANIV 631 (1019)
Q Consensus 579 I~IWDl~t-~~~l~~l~~h~~~---------------V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ 631 (1019)
|+|||+.+ ++++..+.+|... +..++|+|++ .+|++++.||.|++| +....
T Consensus 308 v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-~~l~s~s~dg~v~iw-d~~~~ 374 (447)
T 3dw8_B 308 VKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD-SVVMTGSYNNFFRMF-DRNTK 374 (447)
T ss_dssp EEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS-SEEEEECSTTEEEEE-ETTTC
T ss_pred EEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCC-CEEEEeccCCEEEEE-EcCCC
Confidence 99999997 8899999988642 3349999998 689999999999665 54443
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-27 Score=262.76 Aligned_cols=264 Identities=16% Similarity=0.298 Sum_probs=223.1
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeec--cCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-E
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWE--GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-R 370 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~--gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~ 370 (1019)
++++|+.++++. |+.+++|+...... ...+..+. +|...|++++|+|+ +.+|++|+.||.|++||+.... .
T Consensus 59 ~~~~~~~l~~~~-dg~i~iw~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~ 132 (337)
T 1gxr_A 59 ISNPTRHVYTGG-KGCVKVWDISHPGN----KSPVSQLDCLNRDNYIRSCKLLPD-GCTLIVGGEASTLSIWDLAAPTPR 132 (337)
T ss_dssp ECSSSSEEEEEC-BSEEEEEETTSTTC----CSCSEEEECSCTTSBEEEEEECTT-SSEEEEEESSSEEEEEECCCC--E
T ss_pred EecCCcEEEEcC-CCeEEEEECCCCCc----eeeeecccccCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEEECCCCCcc
Confidence 567899999998 99999998864331 12233343 89999999999995 8899999999999999995443 2
Q ss_pred EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCE
Q psy307 371 CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTN 450 (1019)
Q Consensus 371 ~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~ 450 (1019)
....+.+|...|.+++|+|++ ++|++++.||.|++||+ ..++.+..+.+|...|.+++|+|+++.
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~--------------~~l~~~~~dg~v~~~d~-~~~~~~~~~~~~~~~i~~~~~~~~~~~ 197 (337)
T 1gxr_A 133 IKAELTSSAPACYALAISPDS--------------KVCFSCCSDGNIAVWDL-HNQTLVRQFQGHTDGASCIDISNDGTK 197 (337)
T ss_dssp EEEEEECSSSCEEEEEECTTS--------------SEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred eeeecccCCCceEEEEECCCC--------------CEEEEEeCCCcEEEEeC-CCCceeeeeecccCceEEEEECCCCCE
Confidence 566788999999999999988 68999999999999999 567888899999999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeecc----------CCCceeeeCCCCCcccEEEEcCCC
Q psy307 451 FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDI----------PVDMKYIADPTMHSMPAVTSSPNN 520 (1019)
Q Consensus 451 l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~----------~~~~~~i~~~~~~~i~~v~~spdg 520 (1019)
|++++.|+.|++||+++++.+..+.....+.+++|+|++...+... ..........+...+.+++|+|++
T Consensus 198 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 277 (337)
T 1gxr_A 198 LWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCG 277 (337)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTS
T ss_pred EEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCC
Confidence 9999999999999999999999998888999999999987665532 222233345567789999999999
Q ss_pred CEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy307 521 KWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDW 584 (1019)
Q Consensus 521 ~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl 584 (1019)
++|++++.||.|++||+.++... .. ..|. ..+.+++|+|++++|++++.||.|++||+
T Consensus 278 ~~l~~~~~dg~i~~~~~~~~~~~---~~-~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 278 KWFVSTGKDNLLNAWRTPYGASI---FQ-SKES--SSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SEEEEEETTSEEEEEETTTCCEE---EE-EECS--SCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CEEEEecCCCcEEEEECCCCeEE---EE-ecCC--CcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 99999999999999999876432 22 2343 67999999999999999999999999996
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-29 Score=279.41 Aligned_cols=244 Identities=18% Similarity=0.284 Sum_probs=194.5
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCC-CCcEEEEeeCCCeEEEEecCCCc-E
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPK-SAHLLLSCSMDCRVKLWEVYKER-R 370 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd-~g~lLaSgs~Dg~I~IWdl~~~~-~ 370 (1019)
.++++|+.+++++.|+.|++|+..... ..++.++.+|.+.|++++|+|+ ++.+|+||+.|++|+|||+.... .
T Consensus 20 ~~s~~g~~lasgs~D~~v~lwd~~~~~-----~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~ 94 (316)
T 3bg1_A 20 QMDYYGTRLATCSSDRSVKIFDVRNGG-----QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWE 94 (316)
T ss_dssp EECGGGCEEEEEETTTEEEEEEEETTE-----EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCC
T ss_pred eEcCCCCEEEEEeCCCeEEEEEecCCC-----cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcce
Confidence 356789999999999999999875321 1356789999999999999863 47899999999999999996532 4
Q ss_pred EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe--EEEEEccccccEeEEEEecC-
Q psy307 371 CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR--CVRTYYGHRQAVRDICFNNT- 447 (1019)
Q Consensus 371 ~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~--~~~~l~~H~~~V~sl~fspd- 447 (1019)
+...+.+|...|.+++|+|++. +.+|++|+.|++|++||+..... ....+.+|...|.+++|+|+
T Consensus 95 ~~~~~~~h~~~V~~v~~~p~~~------------g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 95 KSHEHAGHDSSVNSVCWAPHDY------------GLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp EEEEECCCSSCCCEEEECCTTT------------CSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred EEEEccCCCCceEEEEECCCCC------------CcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence 6677889999999999999731 16899999999999999965433 24556789999999999997
Q ss_pred ----------------CCEEEEEEcCCeEEEEECCCCc---eEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCC
Q psy307 448 ----------------GTNFISAGYDRYLKLWDTESGE---CISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTM 508 (1019)
Q Consensus 448 ----------------g~~l~S~s~Dg~I~lWDl~t~~---~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~ 508 (1019)
+++|++|+.|++|++||++.+. ++..+. .|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~------------------------------~h~ 212 (316)
T 3bg1_A 163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE------------------------------AHS 212 (316)
T ss_dssp CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB------------------------------CCS
T ss_pred CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc------------------------------cCC
Confidence 4689999999999999987542 222222 234
Q ss_pred CcccEEEEcCCC----CEEEEEecCCeEEEEEccCccc-ccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy307 509 HSMPAVTSSPNN----KWLACQSMDNKILIFSALNRFK-LNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWD 583 (1019)
Q Consensus 509 ~~i~~v~~spdg----~~Lasgs~Dg~I~iwd~~~~~~-~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWD 583 (1019)
..|.+++|+|++ .+|++++.||+|++|++.+... ......+.+|. ..|.+++|+|+|++|++|+.||+|+||+
T Consensus 213 ~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~--~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 213 DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFN--DVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp SCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECS--SCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred CceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCC--CcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 556677777765 7899999999999999876311 11123445565 6799999999999999999999999999
Q ss_pred CC
Q psy307 584 WK 585 (1019)
Q Consensus 584 l~ 585 (1019)
..
T Consensus 291 ~~ 292 (316)
T 3bg1_A 291 ES 292 (316)
T ss_dssp EC
T ss_pred EC
Confidence 75
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-27 Score=271.24 Aligned_cols=300 Identities=12% Similarity=0.089 Sum_probs=224.4
Q ss_pred CCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEe-----------
Q psy307 307 DVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTY----------- 375 (1019)
Q Consensus 307 D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~----------- 375 (1019)
+..+++|+... .+....+.+|.+.|++++|+|.++.+|++|+.||.|++||+.... ....+
T Consensus 22 ~~~~~v~~~~~-------~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~ 93 (408)
T 4a11_B 22 ESTRRVLGLEL-------NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSS-RQSYYTCKAVCSIGRD 93 (408)
T ss_dssp HHHHHHHTEEE-------CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCS-SSSCEEECEEEEECTT
T ss_pred cCcceeecccc-------CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCc-ccceEecccccccccc
Confidence 34556665442 245678889999999999999448899999999999999995432 22111
Q ss_pred --cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCC---CE
Q psy307 376 --YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTG---TN 450 (1019)
Q Consensus 376 --~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg---~~ 450 (1019)
.+|...|.+++|+|++. .+|++++.||.|++||+ ..+.....+. +...+.++.|++.+ ..
T Consensus 94 ~~~~~~~~v~~~~~~~~~~-------------~~l~s~~~d~~i~iwd~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 158 (408)
T 4a11_B 94 HPDVHRYSVETVQWYPHDT-------------GMFTSSSFDKTLKVWDT-NTLQTADVFN-FEETVYSHHMSPVSTKHCL 158 (408)
T ss_dssp CTTCCSSCEEEEEECTTCT-------------TCEEEEETTSEEEEEET-TTTEEEEEEE-CSSCEEEEEECSSCSSCCE
T ss_pred ccccCCCcEEEEEEccCCC-------------cEEEEEeCCCeEEEeeC-CCCccceecc-CCCceeeeEeecCCCCCcE
Confidence 25888999998888432 68999999999999999 4555555554 78889999999854 48
Q ss_pred EEEEEcCCeEEEEECCCCceEEEEec-CCceEEEEEecCCCe-eeeccCCCceeee------------------------
Q psy307 451 FISAGYDRYLKLWDTESGECISRFTS-RKVAYCVKFHPDEDK-QHLDIPVDMKYIA------------------------ 504 (1019)
Q Consensus 451 l~S~s~Dg~I~lWDl~t~~~i~~~~~-~~~v~~v~~~p~~~~-~~~~~~~~~~~i~------------------------ 504 (1019)
+++++.|+.|++||+++++++..+.. ...+.+++|+|++.. .+.........++
T Consensus 159 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 238 (408)
T 4a11_B 159 VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVE 238 (408)
T ss_dssp EEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTT
T ss_pred EEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeec
Confidence 99999999999999999998888874 467999999999885 3332211111111
Q ss_pred ---CCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEE
Q psy307 505 ---DPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYI 581 (1019)
Q Consensus 505 ---~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~I 581 (1019)
..+...+.+++|+|++++|++++.||.|++||+.++.................+........+..+++++.||.|++
T Consensus 239 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 318 (408)
T 4a11_B 239 SANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAV 318 (408)
T ss_dssp TSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEE
T ss_pred cccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEE
Confidence 34667789999999999999999999999999987643221111000000011111222334556777788999999
Q ss_pred EeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEecccee
Q psy307 582 WDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIV 631 (1019)
Q Consensus 582 WDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ 631 (1019)
||+.+++.+..+.+|.+.|.+++|+|++ .+|++++.||.|++| +....
T Consensus 319 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw-~~~~~ 366 (408)
T 4a11_B 319 YTVYSGEQITMLKGHYKTVDCCVFQSNF-QELYSGSRDCNILAW-VPSLY 366 (408)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEE-EECC-
T ss_pred EECcCCcceeeeccCCCeEEEEEEcCCC-CEEEEECCCCeEEEE-eCCCC
Confidence 9999999999999999999999999998 699999999999765 44443
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-28 Score=281.13 Aligned_cols=252 Identities=20% Similarity=0.324 Sum_probs=210.9
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC---------cEEEEEecccCccEeEEEEcCCCCceeEEE
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE---------RRCVRTYYGHRQAVRDICFNNTGTNFISAI 398 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~---------~~~~~~~~gh~~~V~~i~fspdg~~~vs~i 398 (1019)
+....+|.+.|++++|+|+++.+|++|+.||.|+||++... ...+..+.+|...|.+++|+|++.
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~------ 194 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN------ 194 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST------
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC------
Confidence 34567899999999999976889999999999999999542 566788899999999999999873
Q ss_pred eecCCCCcEEEEEeCCCcEEEEEccCCCe------EEEEEccccccEeEEEEec-CCCEEEEEEcCCeEEEEECCCCc--
Q psy307 399 RWFPKSAHLLLSCSMDCRVKLWEVYKEHR------CVRTYYGHRQAVRDICFNN-TGTNFISAGYDRYLKLWDTESGE-- 469 (1019)
Q Consensus 399 ~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~------~~~~l~~H~~~V~sl~fsp-dg~~l~S~s~Dg~I~lWDl~t~~-- 469 (1019)
.+|++|+.||.|++||+..... ....+.+|...|.+++|+| ++..|++++.||.|++||++++.
T Consensus 195 -------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~ 267 (430)
T 2xyi_A 195 -------GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS 267 (430)
T ss_dssp -------TEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS
T ss_pred -------CeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC
Confidence 4899999999999999965321 2466779999999999999 67789999999999999998763
Q ss_pred -eEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCC-EEEEEecCCeEEEEEccCccccccee
Q psy307 470 -CISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK-WLACQSMDNKILIFSALNRFKLNRKK 547 (1019)
Q Consensus 470 -~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~-~Lasgs~Dg~I~iwd~~~~~~~~~~~ 547 (1019)
.+..+. .+...+.+++|+|++. +|++|+.||.|++||++... ..+.
T Consensus 268 ~~~~~~~------------------------------~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~ 315 (430)
T 2xyi_A 268 KPSHTVD------------------------------AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLH 315 (430)
T ss_dssp SCSEEEE------------------------------CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSE
T ss_pred cceeEee------------------------------cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeE
Confidence 222222 2345677888888886 68899999999999998742 3456
Q ss_pred EEeccccccceEEEEEcCCCC-EEEEEeCCCeEEEEeCCC--------------CceeeeeeccCCCEEEEEEcCCCCcE
Q psy307 548 TFEGHMVAGYACSLDFSPDMS-YLISGDADGKCYIWDWKT--------------TKLFKKWKAHDGVCISTLWHPHEPSK 612 (1019)
Q Consensus 548 ~l~gh~~~~~V~~v~fspdg~-~Lasgs~DG~I~IWDl~t--------------~~~l~~l~~h~~~V~sl~~sp~~~~~ 612 (1019)
.+.+|. +.|.+++|+|+++ +|++|+.||.|+|||+.. .+++..+.+|...|.+++|+|+++.+
T Consensus 316 ~~~~h~--~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 393 (430)
T 2xyi_A 316 SFESHK--DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWI 393 (430)
T ss_dssp EEECCS--SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTE
T ss_pred EeecCC--CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCE
Confidence 777776 7799999999995 799999999999999987 36777888999999999999999669
Q ss_pred EEEEeCCCcEEEEe
Q psy307 613 VVTAGWDAATAKVQ 626 (1019)
Q Consensus 613 l~s~s~Dg~I~iww 626 (1019)
+++++.||.|++|.
T Consensus 394 l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 394 ICSVSEDNIMQVWQ 407 (430)
T ss_dssp EEEEETTSEEEEEE
T ss_pred EEEEECCCCEEEeE
Confidence 99999999997773
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=275.35 Aligned_cols=290 Identities=16% Similarity=0.185 Sum_probs=223.1
Q ss_pred eeccCCCCe--EEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecc-cCccEeEEEEcCCCCceeEEEeecCCCCc
Q psy307 330 TWEGHTKGI--SAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG-HRQAVRDICFNNTGTNFISAIRWFPKSAH 406 (1019)
Q Consensus 330 ~l~gH~~~V--~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g-h~~~V~~i~fspdg~~~vs~i~~~p~~~~ 406 (1019)
...+|...+ .+++|++ ..+++++.||.|++||+.. +.....+.. |...|.+++|+|++ .
T Consensus 86 ~~~~~~~~~~~~~~~~s~---~~l~~~~~d~~v~lw~~~~-~~~~~~~~~~~~~~v~~v~~s~~~--------------~ 147 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSN---LNVVAVALERNVYVWNADS-GSVSALAETDESTYVASVKWSHDG--------------S 147 (401)
T ss_dssp ECTTCCCCTTCBCEEECT---TSEEEEEETTEEEEEETTT-CCEEEEEECCTTCCEEEEEECTTS--------------S
T ss_pred eCCCCcCCceEEEEeecC---CCEEEEECCCeEEEeeCCC-CcEeEeeecCCCCCEEEEEECCCC--------------C
Confidence 344676654 4566654 3578889999999999954 444555444 88999999999988 6
Q ss_pred EEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCC-CceEEEEecCCceEEEEE
Q psy307 407 LLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTES-GECISRFTSRKVAYCVKF 485 (1019)
Q Consensus 407 ~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t-~~~i~~~~~~~~v~~v~~ 485 (1019)
+|++|+.||.|++||+ ..+..+..+.+|...|.+++| +++.|++++.||.|++||++. +..+..+..
T Consensus 148 ~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------- 215 (401)
T 4aez_A 148 FLSVGLGNGLVDIYDV-ESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQG--------- 215 (401)
T ss_dssp EEEEEETTSCEEEEET-TTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEEC---------
T ss_pred EEEEECCCCeEEEEEC-cCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcC---------
Confidence 9999999999999999 566788889999999999999 457999999999999999984 444443332
Q ss_pred ecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcC
Q psy307 486 HPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP 565 (1019)
Q Consensus 486 ~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp 565 (1019)
+...+.+++|+|++++|++|+.||.|++||+.++ .....+.+|. ..|.+++|+|
T Consensus 216 ---------------------~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~---~~~~~~~~~~--~~v~~~~~~p 269 (401)
T 4aez_A 216 ---------------------HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS---IPKFTKTNHN--AAVKAVAWCP 269 (401)
T ss_dssp ---------------------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS---SEEEEECCCS--SCCCEEEECT
T ss_pred ---------------------CCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC---CccEEecCCc--ceEEEEEECC
Confidence 3456778888999999999999999999999876 3446666776 6799999999
Q ss_pred CCC-EEEEEe--CCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEE--eCCCcEEEEeccceeeeeeecccc
Q psy307 566 DMS-YLISGD--ADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTA--GWDAATAKVQDANIVKIAVEMEKQ 640 (1019)
Q Consensus 566 dg~-~Lasgs--~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~--s~Dg~I~iwwd~~i~ki~~e~~~~ 640 (1019)
++. ++++|+ .||.|++||+.+++.+..+. |...|.+++|+|++ ..++++ +.||.|++|. ....+.
T Consensus 270 ~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~-~~l~~~~g~~dg~i~v~~-~~~~~~------- 339 (401)
T 4aez_A 270 WQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHS-KEIMSTHGFPDNNLSIWS-YSSSGL------- 339 (401)
T ss_dssp TSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSS-SEEEEEECTTTCEEEEEE-EETTEE-------
T ss_pred CCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCC-CeEEEEeecCCCcEEEEe-cCCccc-------
Confidence 765 566655 79999999999999998886 56689999999998 467774 4899997762 110000
Q ss_pred CCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCc
Q psy307 641 VPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKN 720 (1019)
Q Consensus 641 v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~ 720 (1019)
.....+ .-|.+.|++++|+|++ +.|++++.||+
T Consensus 340 ------------------------------~~~~~~---------------~~h~~~v~~~~~s~dg--~~l~s~~~dg~ 372 (401)
T 4aez_A 340 ------------------------------TKQVDI---------------PAHDTRVLYSALSPDG--RILSTAASDEN 372 (401)
T ss_dssp ------------------------------EEEEEE---------------ECCSSCCCEEEECTTS--SEEEEECTTSE
T ss_pred ------------------------------eeEEEe---------------cCCCCCEEEEEECCCC--CEEEEEeCCCc
Confidence 000000 1356789999999998 78999999999
Q ss_pred hhhHHHHHHhhh
Q psy307 721 ASLEEKTAAEFY 732 (1019)
Q Consensus 721 i~lw~~~~~e~~ 732 (1019)
|++|+....+.+
T Consensus 373 i~iw~~~~~~~~ 384 (401)
T 4aez_A 373 LKFWRVYDGDHV 384 (401)
T ss_dssp EEEEECCC----
T ss_pred EEEEECCCCccc
Confidence 999986544433
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=269.14 Aligned_cols=281 Identities=13% Similarity=0.050 Sum_probs=217.8
Q ss_pred CCCCCCCee-eeCCC---CCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCC--CcEEEEeeCCCeEEEEecC
Q psy307 293 PTDYQGRSF-LHPPH---DVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKS--AHLLLSCSMDCRVKLWEVY 366 (1019)
Q Consensus 293 ~~~~~gr~~-~~~~~---D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~--g~lLaSgs~Dg~I~IWdl~ 366 (1019)
.+.++|..+ ++++. |+.|++|+...... ......+|...|++++|+|++ +.+|++|+.||.|++||+.
T Consensus 25 ~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 98 (357)
T 3i2n_A 25 KWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL------KLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE 98 (357)
T ss_dssp EECTTSSEEEEEEC--CCCEEEEEEEECSSSE------EEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT
T ss_pred EEcCCCceEEEecCccCCCcEEEEEeCCCCcc------cceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC
Confidence 356777655 46655 89999998764321 112234899999999999974 7899999999999999996
Q ss_pred CCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccc----cEeEE
Q psy307 367 KERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQ----AVRDI 442 (1019)
Q Consensus 367 ~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~----~V~sl 442 (1019)
....++..+.+|...|.++.|.+. ++|+|+ +.+|++|+.||.|++||+......+..+..|.+ .|.++
T Consensus 99 ~~~~~~~~~~~~~~~v~~~~~~~~-------~~~s~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 99 APEMPVYSVKGHKEIINAIDGIGG-------LGIGEG-APEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp SCSSCSEEECCCSSCEEEEEEESG-------GGCC-C-CCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred CCCccEEEEEecccceEEEeeccc-------cccCCC-ccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence 555478889999999999966431 011121 168999999999999999766657777766655 89999
Q ss_pred E----EecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEec---CCCeeeeccCCCcee-------------
Q psy307 443 C----FNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHP---DEDKQHLDIPVDMKY------------- 502 (1019)
Q Consensus 443 ~----fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p---~~~~~~~~~~~~~~~------------- 502 (1019)
+ |+|++++|++++.||.|++||+++++..........+.+++|+| ++...+.........
T Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 250 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF 250 (357)
T ss_dssp EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEE
T ss_pred EEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccce
Confidence 8 78899999999999999999999999888878888999999999 776655422211111
Q ss_pred ---eeCCCCCcccEEEEcCCCC-EEEEEecCCeEEEEEccCcccc----------------cceeEEeccccccceEEEE
Q psy307 503 ---IADPTMHSMPAVTSSPNNK-WLACQSMDNKILIFSALNRFKL----------------NRKKTFEGHMVAGYACSLD 562 (1019)
Q Consensus 503 ---i~~~~~~~i~~v~~spdg~-~Lasgs~Dg~I~iwd~~~~~~~----------------~~~~~l~gh~~~~~V~~v~ 562 (1019)
....+...+.+++|+|++. +|++++.||.|++||+...... ..+..+.+|. ..|.+++
T Consensus 251 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~v~~~~ 328 (357)
T 3i2n_A 251 ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLST--QPISSLD 328 (357)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCS--SCEEEEE
T ss_pred eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCC--CCeeEEE
Confidence 1125778899999999998 8999999999999999864322 3466777786 7799999
Q ss_pred EcCCCCEEE-EEeCCCeEEEEeCCCCce
Q psy307 563 FSPDMSYLI-SGDADGKCYIWDWKTTKL 589 (1019)
Q Consensus 563 fspdg~~La-sgs~DG~I~IWDl~t~~~ 589 (1019)
|+|+|++|+ +|+.||.|+|||+.+.+.
T Consensus 329 ~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 329 WSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp ECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred EcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 999999998 899999999999987654
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=276.93 Aligned_cols=243 Identities=19% Similarity=0.240 Sum_probs=197.2
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcE---EEEEecccCccEeEEEEcC-CCCceeEEEeecCCCCcEEEEEe
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERR---CVRTYYGHRQAVRDICFNN-TGTNFISAIRWFPKSAHLLLSCS 412 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~---~~~~~~gh~~~V~~i~fsp-dg~~~vs~i~~~p~~~~~L~sgs 412 (1019)
....++++|+...++++|+.||.|+||++...++ .+..+.+|...|.+++|+| ++ .+|++|+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~--------------~~l~s~s 101 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHND--------------NVIASGS 101 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCT--------------TEEEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCC--------------CEEEEEe
Confidence 3446888997556677789999999999965543 3456789999999999999 66 7999999
Q ss_pred CCCcEEEEEccCCC------eEEEEEccccccEeEEEEecCC-CEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEE
Q psy307 413 MDCRVKLWEVYKEH------RCVRTYYGHRQAVRDICFNNTG-TNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKF 485 (1019)
Q Consensus 413 ~Dg~I~IWDl~~~~------~~~~~l~~H~~~V~sl~fspdg-~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~ 485 (1019)
.||.|++||+.... .++..+.+|...|.+++|+|++ ..|++++.|++|++||+++++++..+..
T Consensus 102 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------- 172 (402)
T 2aq5_A 102 EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP--------- 172 (402)
T ss_dssp TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT---------
T ss_pred CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec---------
Confidence 99999999996543 5678889999999999999998 6999999999999999999987766620
Q ss_pred ecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEE-eccccccceEEEEEc
Q psy307 486 HPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTF-EGHMVAGYACSLDFS 564 (1019)
Q Consensus 486 ~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l-~gh~~~~~V~~v~fs 564 (1019)
..+...+.+++|+|++++|++++.||.|++||++++. ....+ .+|.. ..+.++.|+
T Consensus 173 -------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~-~~~~~~~~~ 229 (402)
T 2aq5_A 173 -------------------DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT---VVAEKDRPHEG-TRPVHAVFV 229 (402)
T ss_dssp -------------------TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE---EEEEEECSSCS-SSCCEEEEC
T ss_pred -------------------CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc---eeeeeccCCCC-CcceEEEEc
Confidence 1233567788888999999999999999999998763 34555 56652 347889999
Q ss_pred CCCCEEEEE---eCCCeEEEEeCCCCce-eeeee-ccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 565 PDMSYLISG---DADGKCYIWDWKTTKL-FKKWK-AHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 565 pdg~~Lasg---s~DG~I~IWDl~t~~~-l~~l~-~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
|+|++|++| +.||.|++||+.+++. +.... .|...+.+++|+|++..++++++.||.|++|
T Consensus 230 ~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~ 295 (402)
T 2aq5_A 230 SEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYF 295 (402)
T ss_dssp STTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEE
T ss_pred CCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEE
Confidence 999999999 7999999999998765 33333 4677899999999985444566689999776
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-28 Score=284.77 Aligned_cols=346 Identities=9% Similarity=0.039 Sum_probs=243.5
Q ss_pred CCCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE
Q psy307 292 DPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC 371 (1019)
Q Consensus 292 ~~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~ 371 (1019)
-.++++|+.+++++.|++|+ +.. ....++||.+.|.+++|+|++ .++.+.+|+.. . ..
T Consensus 21 v~~SpDG~~iASas~D~TV~--d~~----------~~~~l~gh~~~v~~V~FsPdg--------~~~~~~~~~~~-~-~~ 78 (588)
T 2j04_A 21 LTWARDGTLYLTTFPDISIG--QPK----------YAKDINCNSKNLFHVKEFPLE--------FENKLDFELAQ-Q-NG 78 (588)
T ss_dssp EEECTTSCEEEECSSSEEEE--EEC----------CCSCCSSBGGGTEEEEEECCC--------CCCTTTTSCCC-S-SC
T ss_pred EEECCCCCEEEEEcCCceee--ccc----------ccceecCCCccEEEEEECCCC--------CcceEEEEeCC-C-ce
Confidence 35789999999999999998 321 123447999999999999973 56666666642 1 11
Q ss_pred EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccc-----cEeEEEEec
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQ-----AVRDICFNN 446 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~-----~V~sl~fsp 446 (1019)
...+ .|...|.+++|+|+| .+|++++.||.|++||... ++..+. |.. .|.+++|||
T Consensus 79 ~~~~-~~~~~V~~vawSPdG--------------~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSP 139 (588)
T 2j04_A 79 LLNS-QPVCYPRVCKPSPID--------------DWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNP 139 (588)
T ss_dssp SSTT-SCSCCEEEEEECSSS--------------SCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECS
T ss_pred Eeec-CCCCcEEEEEECCCC--------------CEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcC
Confidence 1122 568889999999999 6899999999999999522 666667 665 599999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCce-------EEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC
Q psy307 447 TGTNFISAGYDRYLKLWDTESGEC-------ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN 519 (1019)
Q Consensus 447 dg~~l~S~s~Dg~I~lWDl~t~~~-------i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd 519 (1019)
||++|++|+.||+|+|||+.++.. +.++..+. ..|...|.+++|+|+
T Consensus 140 DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~--------------------------~gh~~~V~sVawSPd 193 (588)
T 2j04_A 140 IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSD--------------------------AGSKDWVTHIVWYED 193 (588)
T ss_dssp SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSC--------------------------TTCCCCEEEEEEETT
T ss_pred CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccc--------------------------ccccccEEEEEEcCC
Confidence 999999999999999999998752 34433211 224567888999999
Q ss_pred CCEEEEEecCCeEEEEEccCcccccceeEEe-ccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCC
Q psy307 520 NKWLACQSMDNKILIFSALNRFKLNRKKTFE-GHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDG 598 (1019)
Q Consensus 520 g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~-gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~ 598 (1019)
| +++++.|++|++||+.++.......++. +|. ..|.+++|+ |++||+++ +|+|++||+.+++......+|.+
T Consensus 194 g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~--~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~ 266 (588)
T 2j04_A 194 V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASR--RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLE 266 (588)
T ss_dssp E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCS--SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCS
T ss_pred c--EEEEeCCCeEEEEECCCCccccceeeeccccc--CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCc
Confidence 9 8889999999999998764222234563 665 679999999 68999987 69999999998887444448999
Q ss_pred CEEEEEE--cCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEe
Q psy307 599 VCISTLW--HPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQF 676 (1019)
Q Consensus 599 ~V~sl~~--sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~ 676 (1019)
.|.+++| +|++ ..+++++.||+ ++|.... +.+.....+.+..+.....|....++.. .+
T Consensus 267 ~V~~va~~~s~d~-~~La~a~edG~-klw~~d~---------------~~~spd~~l~a~~d~~v~lW~~~g~~l~--~~ 327 (588)
T 2j04_A 267 NFHIIPLNHEKES-TILLMSNKTSY-KVLLEDE---------------LHVTADNIIAPYLEKKFKKWSTIWNEFN--NY 327 (588)
T ss_dssp CCCEEEETTCSSC-EEEEECSSCEE-EEEESSS---------------EEEECCCSSHHHHHHHHHHTTTTTTSSS--SS
T ss_pred eEEEEEeeeCCCC-CEEEEEcCCCC-EEEeecc---------------EEECCCceEEEEcCCEEEEEECCCCcee--ee
Confidence 9999999 9998 68999999999 6664331 1222333333334666667766433311 00
Q ss_pred ecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcC-CCchhhHHHHHHhhheeeeeeeccchhhhhh
Q psy307 677 SETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLS-DKNASLEEKTAAEFYCICIVLLNKTWKEMRA 748 (1019)
Q Consensus 677 sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~-d~~i~lw~~~~~e~~~~~i~~~~~~~~~~~a 748 (1019)
-.+..|.+++|||++ +.++++.. +..+-=++...+-.+.++.+-+.+.|..-..
T Consensus 328 ----------------~~~~~I~~va~SPdG--~~lA~~~~i~~~~~~y~i~s~~~~~i~f~pL~~~w~~~~~ 382 (588)
T 2j04_A 328 ----------------ETTLVIHGISLSPDG--YSIAIVYDMERVAFKYKIASEQSFNIMFAPLYHTWTISER 382 (588)
T ss_dssp ----------------CCEEEEEEEEECTTS--SEEEEEEEEECSSCCCCCSSSCCEEEEEEESSSCCCCCTT
T ss_pred ----------------ccceEEEEEEECCCC--CEEEEEEeccCceeEEeeccceEEEEEEEEccchhccCCC
Confidence 014457889999998 44444433 2221111222333455666666666655443
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=299.39 Aligned_cols=265 Identities=19% Similarity=0.264 Sum_probs=207.4
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC-CcEEEEEecccCccEeEEEEcCC--CCceeEEEeecCCC
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-ERRCVRTYYGHRQAVRDICFNNT--GTNFISAIRWFPKS 404 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~-~~~~~~~~~gh~~~V~~i~fspd--g~~~vs~i~~~p~~ 404 (1019)
+.++.||.+.|++++|+|+ +.+|++|+.||.|+|||+.. ...++..+.+|..+|.+++|+++ +
T Consensus 2 ~~~l~gH~~~V~~l~~s~d-g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~------------- 67 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG------------- 67 (753)
T ss_dssp ------CCCCEEEECCCSS-SCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSC-------------
T ss_pred eeecccCcceeEEEEECCC-CCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCC-------------
Confidence 4578999999999999996 78999999999999999953 45778889999999999999987 5
Q ss_pred CcEEEEEeCCCcEEEEEccCCC-eEEEEEccccccEeEEEEecC--CCEEEEEEcCCeEEEEECCCCceE--EEE-ecCC
Q psy307 405 AHLLLSCSMDCRVKLWEVYKEH-RCVRTYYGHRQAVRDICFNNT--GTNFISAGYDRYLKLWDTESGECI--SRF-TSRK 478 (1019)
Q Consensus 405 ~~~L~sgs~Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~fspd--g~~l~S~s~Dg~I~lWDl~t~~~i--~~~-~~~~ 478 (1019)
.+|++|+.||.|++||+.... ..+..+.+|...|.+++|+|+ ++.+++|+.||+|++||++++... ..+ .+..
T Consensus 68 -~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~ 146 (753)
T 3jro_A 68 -TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146 (753)
T ss_dssp -SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS
T ss_pred -CEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC
Confidence 799999999999999995543 377888999999999999999 999999999999999999887322 222 2334
Q ss_pred ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccc-cceeEEeccccccc
Q psy307 479 VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKL-NRKKTFEGHMVAGY 557 (1019)
Q Consensus 479 ~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~-~~~~~l~gh~~~~~ 557 (1019)
.+.++.|+|.... ........+++.+|++|+.||.|++||++++... .....+.+|. +.
T Consensus 147 ~v~~l~~~p~~~~------------------~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~--~~ 206 (753)
T 3jro_A 147 GVNSASWAPATIE------------------EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS--DW 206 (753)
T ss_dssp CEEEEEECCCC---------------------------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCS--SC
T ss_pred ceEEEEecCcccc------------------cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCC--Cc
Confidence 4555555553110 0000111336899999999999999999875332 3445677777 77
Q ss_pred eEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCc-----eeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccc
Q psy307 558 ACSLDFSPD---MSYLISGDADGKCYIWDWKTTK-----LFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDAN 629 (1019)
Q Consensus 558 V~~v~fspd---g~~Lasgs~DG~I~IWDl~t~~-----~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~ 629 (1019)
|.+++|+|+ |.+|++|+.||.|++||+.++. .+.....|.+.|++++|+|++ .++++++.||.|++| +.+
T Consensus 207 V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~Dg~I~vw-d~~ 284 (753)
T 3jro_A 207 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLW-KEN 284 (753)
T ss_dssp EEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTT-CCEEEECSSSCEECC-BCC
T ss_pred EEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCC-CEEEEEcCCCEEEEE-ecC
Confidence 999999999 9999999999999999999874 344445688999999999998 689999999999665 443
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-26 Score=269.01 Aligned_cols=256 Identities=21% Similarity=0.431 Sum_probs=218.5
Q ss_pred CCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecc
Q psy307 298 GRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG 377 (1019)
Q Consensus 298 gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g 377 (1019)
+..+++++.|+.|++|+... .+.+.++.+|...|.+++|++ ..|++|+.||.|++||+ ..++++..+.+
T Consensus 169 ~~~l~s~~~dg~i~vwd~~~-------~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~-~~~~~~~~~~~ 237 (445)
T 2ovr_B 169 DNIIISGSTDRTLKVWNAET-------GECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDI-ETGQCLHVLMG 237 (445)
T ss_dssp TTEEEEEETTSCEEEEETTT-------TEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEES-SSCCEEEEEEC
T ss_pred CCEEEEEeCCCeEEEEECCc-------CcEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEEC-CCCcEEEEEcC
Confidence 67899999999999998763 356889999999999999964 57999999999999999 55677888999
Q ss_pred cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcC
Q psy307 378 HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD 457 (1019)
Q Consensus 378 h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~D 457 (1019)
|...|.+++| ++ .++++|+.||.|++||+ ..+.++..+.+|...|.+++| ++.++++++.|
T Consensus 238 ~~~~v~~~~~--~~--------------~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d 298 (445)
T 2ovr_B 238 HVAAVRCVQY--DG--------------RRVVSGAYDFMVKVWDP-ETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLD 298 (445)
T ss_dssp CSSCEEEEEE--CS--------------SCEEEEETTSCEEEEEG-GGTEEEEEECCCSSCEEEEEE--CSSEEEEEETT
T ss_pred CcccEEEEEE--CC--------------CEEEEEcCCCEEEEEEC-CCCcEeEEecCCCCceEEEEE--CCCEEEEEeCC
Confidence 9999999988 44 57999999999999999 567888899999999999999 78999999999
Q ss_pred CeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEc
Q psy307 458 RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSA 537 (1019)
Q Consensus 458 g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~ 537 (1019)
++|++||+++++++..+..+. ..+.++. ++++++++|+.||.|++||+
T Consensus 299 ~~i~i~d~~~~~~~~~~~~~~------------------------------~~v~~~~--~~~~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 299 TSIRVWDVETGNCIHTLTGHQ------------------------------SLTSGME--LKDNILVSGNADSTVKIWDI 346 (445)
T ss_dssp SCEEEEETTTCCEEEEECCCC------------------------------SCEEEEE--EETTEEEEEETTSCEEEEET
T ss_pred CeEEEEECCCCCEEEEEcCCc------------------------------ccEEEEE--EeCCEEEEEeCCCeEEEEEC
Confidence 999999999999887765432 1222333 35679999999999999999
Q ss_pred cCcccccceeEEeccc-cccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee-----eccCCCEEEEEEcCCCCc
Q psy307 538 LNRFKLNRKKTFEGHM-VAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKW-----KAHDGVCISTLWHPHEPS 611 (1019)
Q Consensus 538 ~~~~~~~~~~~l~gh~-~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l-----~~h~~~V~sl~~sp~~~~ 611 (1019)
.++. ....+.++. ....|.+++|+ +++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|++ .
T Consensus 347 ~~~~---~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~ 420 (445)
T 2ovr_B 347 KTGQ---CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK-L 420 (445)
T ss_dssp TTCC---EEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSE-E
T ss_pred CCCc---EEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCE-E
Confidence 8763 445665521 23779999995 689999999999999999999999888 4788899999999988 6
Q ss_pred EEEEEeCCCc
Q psy307 612 KVVTAGWDAA 621 (1019)
Q Consensus 612 ~l~s~s~Dg~ 621 (1019)
.+++|+.||+
T Consensus 421 ~la~~~~dg~ 430 (445)
T 2ovr_B 421 VCAVGSRNGT 430 (445)
T ss_dssp EEEEECSSSS
T ss_pred EEEEcccCCC
Confidence 8999999998
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-27 Score=265.51 Aligned_cols=264 Identities=20% Similarity=0.284 Sum_probs=207.4
Q ss_pred CCeeeeCCCCCceeeecCCCCCCccCCccceeeecc-----CCCCeEEEEEcCCC---CcEEEEeeCCCeEEEEecCCCc
Q psy307 298 GRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEG-----HTKGISAIRWFPKS---AHLLLSCSMDCRVKLWEVYKER 369 (1019)
Q Consensus 298 gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~g-----H~~~V~~i~fspd~---g~lLaSgs~Dg~I~IWdl~~~~ 369 (1019)
...++.+..++.|.+|+.... +.+..+.+ |...|++++|+|++ +.+|++|+.||.|++||+ ...
T Consensus 34 ~~~~~~~~~~~~v~vw~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~-~~~ 105 (366)
T 3k26_A 34 DPLVFATVGSNRVTLYECHSQ-------GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINP-ITM 105 (366)
T ss_dssp SCEEEEEEETTEEEEEEECGG-------GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECT-TTC
T ss_pred CceEEEECCCCEEEEEEcCCC-------cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEc-hhc
Confidence 344556666779999987632 22333333 66889999999963 569999999999999999 456
Q ss_pred EEEEEecccCccEeEEEEcC-CCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEE---ccccccEeEEEEe
Q psy307 370 RCVRTYYGHRQAVRDICFNN-TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY---YGHRQAVRDICFN 445 (1019)
Q Consensus 370 ~~~~~~~gh~~~V~~i~fsp-dg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l---~~H~~~V~sl~fs 445 (1019)
+++..+.+|...|.+++|+| ++ .+|++|+.||.|++||+ ..+..+..+ .+|...|.+++|+
T Consensus 106 ~~~~~~~~~~~~i~~~~~~~~~~--------------~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 106 QCIKHYVGHGNAINELKFHPRDP--------------NLLLSVSKDHALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp CEEEEEESCCSCEEEEEECSSCT--------------TEEEEEETTSCEEEEET-TTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred eEeeeecCCCCcEEEEEECCCCC--------------CEEEEEeCCCeEEEEEe-ecCeEEEEecccccccCceeEEEEC
Confidence 77888999999999999999 66 79999999999999999 556777777 7899999999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCceEEEEe-----------------------------cCCceEEEEEecCCCeeee--
Q psy307 446 NTGTNFISAGYDRYLKLWDTESGECISRFT-----------------------------SRKVAYCVKFHPDEDKQHL-- 494 (1019)
Q Consensus 446 pdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~-----------------------------~~~~v~~v~~~p~~~~~~~-- 494 (1019)
|++++|++++.||.|++||+++++....+. ....+.+++|+ +...+.
T Consensus 171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 248 (366)
T 3k26_A 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS 248 (366)
T ss_dssp TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence 999999999999999999999876543332 44667788887 222222
Q ss_pred --------ccCCC---------------ceeeeCCCCCcccEEEEcCC--CCEEEEEecCCeEEEEEccCccccc-ceeE
Q psy307 495 --------DIPVD---------------MKYIADPTMHSMPAVTSSPN--NKWLACQSMDNKILIFSALNRFKLN-RKKT 548 (1019)
Q Consensus 495 --------~~~~~---------------~~~i~~~~~~~i~~v~~spd--g~~Lasgs~Dg~I~iwd~~~~~~~~-~~~~ 548 (1019)
+.... .......+...+.+++|+|+ +++|++|+.||.|++||+.++.... ....
T Consensus 249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 328 (366)
T 3k26_A 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT 328 (366)
T ss_dssp SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence 11110 12223345567889999999 9999999999999999998765433 3456
Q ss_pred EeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy307 549 FEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKT 586 (1019)
Q Consensus 549 l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t 586 (1019)
+.+|.....|.+++|+|+|++|++|+.||.|+|||+.+
T Consensus 329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 77775458899999999999999999999999999853
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-27 Score=270.49 Aligned_cols=309 Identities=11% Similarity=0.085 Sum_probs=200.3
Q ss_pred CCCeeeeCCCCCceeeecCCCCCCccCCc---cceeeeccCCCCeEEEEEc-------------------CCCCcEEEEe
Q psy307 297 QGRSFLHPPHDVGTNLRSDTPPDRCFLPK---TQVHTWEGHTKGISAIRWF-------------------PKSAHLLLSC 354 (1019)
Q Consensus 297 ~gr~~~~~~~D~~v~lw~~~~~~~~~lp~---~~i~~l~gH~~~V~~i~fs-------------------pd~g~lLaSg 354 (1019)
.+..++..++|+.|.+|............ ..+..+ .|...+.++.|+ |.++.+|++|
T Consensus 29 ~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~ 107 (393)
T 4gq1_A 29 SCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTI-QTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLACV 107 (393)
T ss_dssp GGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEE-ECSSCEEEEEECTTCEEECC----------CCEEEEEEEEE
T ss_pred CCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEE-ecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEEE
Confidence 34445666678889998654332211111 111111 233344444433 2246689999
Q ss_pred eCCCeEEEEecCCCcE----EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEE
Q psy307 355 SMDCRVKLWEVYKERR----CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVR 430 (1019)
Q Consensus 355 s~Dg~I~IWdl~~~~~----~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~ 430 (1019)
+.|++|+|||+..... .+..+.||.+.|.+++|+|... ...+.++++|++|+.|++|+|||+ ..+.++.
T Consensus 108 ~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~------~~~~~d~~~las~s~D~tv~~Wd~-~~~~~~~ 180 (393)
T 4gq1_A 108 CQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYS------ADNRLAEQVIASVGDDCTLIIWRL-TDEGPIL 180 (393)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEEC------TTCSEEEEEEEEEETTSEEEEEEE-ETTEEEE
T ss_pred eCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccc------cccCCCCCEEEEEECCCeEEEEEC-CCCceee
Confidence 9999999999955432 2345789999999999987210 011223379999999999999999 4556677
Q ss_pred EEccccccEeEEEEecCCC-EEEEEEcCCeEEEEECCCCceEEEEecCC---ceEEEEEecCCCeeeeccCCCceeeeCC
Q psy307 431 TYYGHRQAVRDICFNNTGT-NFISAGYDRYLKLWDTESGECISRFTSRK---VAYCVKFHPDEDKQHLDIPVDMKYIADP 506 (1019)
Q Consensus 431 ~l~~H~~~V~sl~fspdg~-~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~---~v~~v~~~p~~~~~~~~~~~~~~~i~~~ 506 (1019)
.+.+|...|.+++|+|++. +|++++.|++|++||+++++......... ...++...+. ..........
T Consensus 181 ~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~--------~~~~~~~~~~ 252 (393)
T 4gq1_A 181 AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTL--------PLVNTCHSSG 252 (393)
T ss_dssp EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESG--------GGC------C
T ss_pred eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccc--------cceeeeeccc
Confidence 7788999999999999875 79999999999999999987765543221 1111111111 1111222345
Q ss_pred CCCcccEEEEc-CCCCEEEEEecCCeEEEEEccCcccccceeEEeccc----------------cccceEEEEEcC--CC
Q psy307 507 TMHSMPAVTSS-PNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHM----------------VAGYACSLDFSP--DM 567 (1019)
Q Consensus 507 ~~~~i~~v~~s-pdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~----------------~~~~V~~v~fsp--dg 567 (1019)
+...+.++.|+ |+|+.|++++.|+++++||+..+... ..+..|. ...+.....|+| ++
T Consensus 253 ~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (393)
T 4gq1_A 253 IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY---NEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMD 329 (393)
T ss_dssp CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTT
T ss_pred ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC---ceEeeecCccccEEEccccccccccCcceeEEEccCCCC
Confidence 66778888886 89999999999999999999765322 2222221 011122233444 45
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 568 SYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 568 ~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
.++++|+.||+|+|||+.+++.+..+..|..+|.+++|+|+| ++|++++.||.+ +|.
T Consensus 330 ~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG-~~LA~as~~Gv~-lvr 386 (393)
T 4gq1_A 330 YFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDG-SHLAIATEGSVL-LTR 386 (393)
T ss_dssp EEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTS-SEEEEEESSEEE-EEE
T ss_pred EEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCC-CEEEEEeCCCeE-EEE
Confidence 578889999999999999999999999999999999999999 689999877644 553
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-26 Score=267.45 Aligned_cols=288 Identities=19% Similarity=0.352 Sum_probs=225.9
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
+....+|...|+|++| ++.+|++|+.||.|++||+ ..++++..+.+|...|.+++| ++ .+
T Consensus 126 ~~~~~~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~-~~~~~~~~~~~h~~~v~~l~~--~~--------------~~ 185 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDK-NTLECKRILTGHTGSVLCLQY--DE--------------RV 185 (435)
T ss_dssp EECCCSSCCCEEEEEC---CSSEEEEEESSSCEEEEES-SSCCEEEEECCCSSCEEEEEC--CS--------------SE
T ss_pred EecccCCCCcEEEEEE---CCCEEEEEeCCCeEEEEeC-CCCeEEEEEcCCCCcEEEEEE--CC--------------CE
Confidence 3445678889999987 3679999999999999999 566788899999999999988 44 68
Q ss_pred EEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEec
Q psy307 408 LLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHP 487 (1019)
Q Consensus 408 L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p 487 (1019)
|++|+.||.|++||+ ..++.+..+.+|...|.+++|+ +..+++|+.||+|++||++++......
T Consensus 186 l~sg~~dg~i~vwd~-~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~------------- 249 (435)
T 1p22_A 186 IITGSSDSTVRVWDV-NTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLR------------- 249 (435)
T ss_dssp EEEEETTSCEEEEES-SSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEE-------------
T ss_pred EEEEcCCCeEEEEEC-CCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceee-------------
Confidence 999999999999999 5667889999999999999996 469999999999999999887643211
Q ss_pred CCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCC
Q psy307 488 DEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM 567 (1019)
Q Consensus 488 ~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg 567 (1019)
.....+...+.++++ ++++|++|+.||.|++||+.++ .....+.+|. ..|.++.| ++
T Consensus 250 --------------~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~--~~v~~~~~--~~ 306 (435)
T 1p22_A 250 --------------RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC---EFVRTLNGHK--RGIACLQY--RD 306 (435)
T ss_dssp --------------EEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC---CEEEEEECCS--SCEEEEEE--ET
T ss_pred --------------eEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC---cEEEEEcCCC--CcEEEEEe--CC
Confidence 111223445666666 7889999999999999999887 4457778887 67888888 57
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeec
Q psy307 568 SYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQF 647 (1019)
Q Consensus 568 ~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l 647 (1019)
.++++|+.||.|++||+.+++.+..+.+|...|.+++| ++ .++++|+.||.|++| +..... .+..
T Consensus 307 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~-~~l~sg~~dg~i~vw-d~~~~~--------~~~~--- 371 (435)
T 1p22_A 307 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DN-KRIVSGAYDGKIKVW-DLVAAL--------DPRA--- 371 (435)
T ss_dssp TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEE-EHHHHT--------STTS---
T ss_pred CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cC-CEEEEEeCCCcEEEE-ECCCCC--------Cccc---
Confidence 89999999999999999999999999999999999999 34 689999999999776 321110 0000
Q ss_pred ccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCchhhHHHH
Q psy307 648 NQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNASLEEKT 727 (1019)
Q Consensus 648 ~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~~~ 727 (1019)
..+......+ .-|.+.|.+++|.+. .|++++.||+|++|+..
T Consensus 372 -------------------~~~~~~~~~~---------------~~h~~~v~~l~~~~~----~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 372 -------------------PAGTLCLRTL---------------VEHSGRVFRLQFDEF----QIVSSSHDDTILIWDFL 413 (435)
T ss_dssp -------------------CTTTTEEEEE---------------CCCSSCCCCEEECSS----CEEECCSSSEEEEEC--
T ss_pred -------------------cccchheeec---------------cCCCCCeEEEEeCCC----EEEEEeCCCEEEEEECC
Confidence 0000011111 136778899999443 49999999999999853
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-26 Score=261.36 Aligned_cols=313 Identities=15% Similarity=0.205 Sum_probs=211.1
Q ss_pred CCC-CCCeeeeCCCCCceeeecCCCCCCccCCc-cc-----eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecC
Q psy307 294 TDY-QGRSFLHPPHDVGTNLRSDTPPDRCFLPK-TQ-----VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVY 366 (1019)
Q Consensus 294 ~~~-~gr~~~~~~~D~~v~lw~~~~~~~~~lp~-~~-----i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~ 366 (1019)
+++ +|+.+++++.|+.|++|+........... .. .....+|.+.|++++|+|+++.+|++|+.||.|++||+.
T Consensus 51 ~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 130 (408)
T 4a11_B 51 IEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTN 130 (408)
T ss_dssp ECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETT
T ss_pred EecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCC
Confidence 566 89999999999999999987543211100 00 011246999999999999778899999999999999994
Q ss_pred CCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec
Q psy307 367 KERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN 446 (1019)
Q Consensus 367 ~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp 446 (1019)
..+....+. +...+.++.+++.+. +..++++|+.||.|++||+ ..+..+..+.+|...|.+++|+|
T Consensus 131 -~~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~v~~~d~-~~~~~~~~~~~~~~~v~~~~~~~ 196 (408)
T 4a11_B 131 -TLQTADVFN-FEETVYSHHMSPVST-----------KHCLVAVGTRGPKVQLCDL-KSGSCSHILQGHRQEILAVSWSP 196 (408)
T ss_dssp -TTEEEEEEE-CSSCEEEEEECSSCS-----------SCCEEEEEESSSSEEEEES-SSSCCCEEECCCCSCEEEEEECS
T ss_pred -CCccceecc-CCCceeeeEeecCCC-----------CCcEEEEEcCCCeEEEEeC-CCcceeeeecCCCCcEEEEEECC
Confidence 455555554 777889998888652 2358999999999999999 55677788999999999999999
Q ss_pred CCCE-EEEEEcCCeEEEEECCCCc-eEEEE----------------ecCCceEEEEEecCCCeeeeccCCCceeeeCCCC
Q psy307 447 TGTN-FISAGYDRYLKLWDTESGE-CISRF----------------TSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTM 508 (1019)
Q Consensus 447 dg~~-l~S~s~Dg~I~lWDl~t~~-~i~~~----------------~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~ 508 (1019)
++++ |++++.||.|++||++++. ++..+ .+...+.+++|+|++..++.........+++...
T Consensus 197 ~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 197 RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 9984 8899999999999998875 44443 2346789999999987766543333233322211
Q ss_pred ----------------CcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEE
Q psy307 509 ----------------HSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLIS 572 (1019)
Q Consensus 509 ----------------~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Las 572 (1019)
..+........+..+++++.++.|++||+.++ ..+..+.+|. +.|.+++|+|+|++|++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~--~~v~~~~~s~~~~~l~s 351 (408)
T 4a11_B 277 GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---EQITMLKGHY--KTVDCCVFQSNFQELYS 351 (408)
T ss_dssp CCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---CEEEEECCCS--SCEEEEEEETTTTEEEE
T ss_pred CccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC---cceeeeccCC--CeEEEEEEcCCCCEEEE
Confidence 11222333344567777888999999999887 4557788887 77999999999999999
Q ss_pred EeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEecc
Q psy307 573 GDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDA 628 (1019)
Q Consensus 573 gs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~ 628 (1019)
|+.||.|++||+.+++.+.....+.. ...+.+.....+.+++.|+.+++|...
T Consensus 352 ~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 352 GSRDCNILAWVPSLYEPVPDDDETTT---KSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp EETTSCEEEEEECC------------------------------------------
T ss_pred ECCCCeEEEEeCCCCCccCCCCceEe---ccccccccceeecccCccCceeecCCc
Confidence 99999999999999988776554332 233444444566778888999887443
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=261.90 Aligned_cols=254 Identities=19% Similarity=0.271 Sum_probs=204.9
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCC-CCcEEEEeeCCCeEEEEecCCCc-E
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPK-SAHLLLSCSMDCRVKLWEVYKER-R 370 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd-~g~lLaSgs~Dg~I~IWdl~~~~-~ 370 (1019)
.++++|+.+++++.|+.|++|+.... ..+.+..+.+|.+.|++++|+|+ ++.+|++|+.||.|++||+.... .
T Consensus 18 ~~s~~~~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 92 (379)
T 3jrp_A 18 VLDYYGKRLATCSSDKTIKIFEVEGE-----THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS 92 (379)
T ss_dssp EECSSSSEEEEEETTSCEEEEEEETT-----EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEE
T ss_pred EEcCCCCEEEEEECCCcEEEEecCCC-----cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCcee
Confidence 35778999999999999999987532 23567889999999999999874 27899999999999999995543 3
Q ss_pred EEEEecccCccEeEEEEcCC--CCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC-eEEEEEccccccEeEEEEec-
Q psy307 371 CVRTYYGHRQAVRDICFNNT--GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH-RCVRTYYGHRQAVRDICFNN- 446 (1019)
Q Consensus 371 ~~~~~~gh~~~V~~i~fspd--g~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~fsp- 446 (1019)
.+..+.+|...|.+++|+|+ + .+|++++.||.|++||+.... .....+.+|...|.+++|+|
T Consensus 93 ~~~~~~~~~~~v~~~~~~~~~~~--------------~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 158 (379)
T 3jrp_A 93 QIAVHAVHSASVNSVQWAPHEYG--------------PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 158 (379)
T ss_dssp EEEEECCCSSCEEEEEECCGGGC--------------SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred EeeeecCCCcceEEEEeCCCCCC--------------CEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence 67788899999999999998 6 699999999999999996553 34556789999999999999
Q ss_pred ------------CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEE
Q psy307 447 ------------TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAV 514 (1019)
Q Consensus 447 ------------dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v 514 (1019)
++..|++++.|+.|++||++++....... .....+...+.++
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------------------~~~~~h~~~v~~~ 212 (379)
T 3jrp_A 159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE--------------------------STLEGHSDWVRDV 212 (379)
T ss_dssp C----------CTTCEEEEEETTSCEEEEEEETTTTEEEEE--------------------------EEECCCSSCEEEE
T ss_pred cccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeE--------------------------EEEecccCcEeEE
Confidence 69999999999999999998765322111 1112344667888
Q ss_pred EEcCC---CCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q psy307 515 TSSPN---NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFK 591 (1019)
Q Consensus 515 ~~spd---g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~ 591 (1019)
+|+|+ +.+|++++.||.|++||+..+........+........|.+++|+|+|++|++++.||.|++||+.++....
T Consensus 213 ~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 292 (379)
T 3jrp_A 213 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 292 (379)
T ss_dssp EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEE
T ss_pred EECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCccc
Confidence 88999 899999999999999999876432222333332233779999999999999999999999999998654433
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-26 Score=255.57 Aligned_cols=253 Identities=17% Similarity=0.248 Sum_probs=204.1
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCC-CCcEEEEeeCCCeEEEEecCCCc---
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPK-SAHLLLSCSMDCRVKLWEVYKER--- 369 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd-~g~lLaSgs~Dg~I~IWdl~~~~--- 369 (1019)
++++|+.+++++.|+.|++|+...... ..+.+..+.+|.+.|++++|+|. ++.+|++|+.||.|++||+....
T Consensus 19 ~~~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~ 95 (351)
T 3f3f_A 19 YDFYGRHVATCSSDQHIKVFKLDKDTS---NWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEEC 95 (351)
T ss_dssp ECSSSSEEEEEETTSEEEEEEECSSSC---CEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTT
T ss_pred EcCCCCEEEEeeCCCeEEEEECCCCCC---cceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccc
Confidence 567899999999999999998864321 23567889999999999999995 38899999999999999995432
Q ss_pred -----EEEEEecccCccEeEEEEcCC--CCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeE-----EEE------
Q psy307 370 -----RCVRTYYGHRQAVRDICFNNT--GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRC-----VRT------ 431 (1019)
Q Consensus 370 -----~~~~~~~gh~~~V~~i~fspd--g~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~-----~~~------ 431 (1019)
+++..+.+|...|.+++|+|+ + .+|++++.||.|++||+...... ...
T Consensus 96 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 96 SGRRWNKLCTLNDSKGSLYSVKFAPAHLG--------------LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI 161 (351)
T ss_dssp SSCSEEEEEEECCCSSCEEEEEECCGGGC--------------SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred cccCcceeeeecccCCceeEEEEcCCCCC--------------cEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence 668888999999999999998 7 68999999999999999544311 011
Q ss_pred -EccccccEeEEEEecC---CCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCC
Q psy307 432 -YYGHRQAVRDICFNNT---GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPT 507 (1019)
Q Consensus 432 -l~~H~~~V~sl~fspd---g~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~ 507 (1019)
..+|...+.+++|+|+ +..+++++.|+.+.+|+...+....... ...+
T Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~h 213 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAK----------------------------LPGH 213 (351)
T ss_dssp CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEE----------------------------CCCC
T ss_pred ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeee----------------------------cCCC
Confidence 1268889999999997 8999999999999888887765422111 1224
Q ss_pred CCcccEEEEcCCC----CEEEEEecCCeEEEEEccCcc------------------------------------------
Q psy307 508 MHSMPAVTSSPNN----KWLACQSMDNKILIFSALNRF------------------------------------------ 541 (1019)
Q Consensus 508 ~~~i~~v~~spdg----~~Lasgs~Dg~I~iwd~~~~~------------------------------------------ 541 (1019)
...|.+++|+|++ ++|++++.||.|++||+....
T Consensus 214 ~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (351)
T 3f3f_A 214 KSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSN 293 (351)
T ss_dssp CSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCS
T ss_pred CcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccc
Confidence 4567788888887 899999999999999998641
Q ss_pred -cccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee
Q psy307 542 -KLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKW 593 (1019)
Q Consensus 542 -~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l 593 (1019)
....+..+.+|. ..|++++|+|+|++|++|+.||.|+|||+.+++.+..+
T Consensus 294 ~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 294 LQVELLSEHDDHN--GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEEEEEEECTTS--SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred ccccEEEEEeccc--ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 113445567776 67999999999999999999999999999988665544
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-25 Score=244.52 Aligned_cols=278 Identities=16% Similarity=0.239 Sum_probs=212.9
Q ss_pred eEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEe--cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 338 ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTY--YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 338 V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~--~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
+++|+||++ .+|++| .|++|+|||+ .++++++.+ .+|...|.+++|+|++ ++|++|+.||
T Consensus 28 ~~~l~WS~~--~~lAvg-~D~tV~iWd~-~tg~~~~~~~~~~~~~~V~~v~~~~~~--------------~~l~sgs~Dg 89 (318)
T 4ggc_A 28 LNLVDWSSG--NVLAVA-LDNSVYLWSA-SSGDILQLLQMEQPGEYISSVAWIKEG--------------NYLAVGTSSA 89 (318)
T ss_dssp CBCEEECTT--SEEEEE-ETTEEEEEET-TTCCEEEEEECCSTTCCEEEEEECTTS--------------SEEEEEETTS
T ss_pred ceEEEECCC--CEEEEE-eCCEEEEEEC-CCCCEEEEEEecCCCCeEEEEEECCCC--------------CEEEEEECCC
Confidence 578999985 366665 5999999999 455666655 4678889999999999 7999999999
Q ss_pred cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCce-EEEEecCCceEEEEEecCCCeeee
Q psy307 416 RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGEC-ISRFTSRKVAYCVKFHPDEDKQHL 494 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~-i~~~~~~~~v~~v~~~p~~~~~~~ 494 (1019)
+|++||+ ..++++..+.+|...+.++.+ ++..+++++.++.+++|+...+.. +..+.
T Consensus 90 ~v~iw~~-~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~------------------- 147 (318)
T 4ggc_A 90 EVQLWDV-QQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLS------------------- 147 (318)
T ss_dssp EEEEEET-TTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEE-------------------
T ss_pred cEEEeec-CCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEc-------------------
Confidence 9999999 677889999999998887655 568999999999999999877643 22222
Q ss_pred ccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCccccc-ceeEEeccccccceEEEEEcCCCCE---E
Q psy307 495 DIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLN-RKKTFEGHMVAGYACSLDFSPDMSY---L 570 (1019)
Q Consensus 495 ~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~-~~~~l~gh~~~~~V~~v~fspdg~~---L 570 (1019)
.+...+..+.+++++++|++++.||.|++||+.++.... .......+. +.|.++.++|++.. +
T Consensus 148 -----------~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~ 214 (318)
T 4ggc_A 148 -----------GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ--GAVKAVAWCPWQSNVLAT 214 (318)
T ss_dssp -----------CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCC--SCEEEEEECTTSTTEEEE
T ss_pred -----------CccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccC--CceEEEEecCCCCcEEEE
Confidence 233556678888999999999999999999998754322 233344444 67999999997763 3
Q ss_pred EEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEE-EeCCCcEEEEeccceeeeeeeccccCCceeeccc
Q psy307 571 ISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVT-AGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQ 649 (1019)
Q Consensus 571 asgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s-~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~ 649 (1019)
++|+.+++|++||..+........ |...+..+.|+|++..++++ ++.||.|++| +...
T Consensus 215 ~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iw-d~~~------------------- 273 (318)
T 4ggc_A 215 GGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIW-KYPT------------------- 273 (318)
T ss_dssp EECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEE-ETTT-------------------
T ss_pred EecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEE-ECCC-------------------
Confidence 467789999999999888766554 56679999999998544433 3378999776 2211
Q ss_pred ccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCchhhHHH
Q psy307 650 TLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNASLEEK 726 (1019)
Q Consensus 650 ~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~~ 726 (1019)
++ ....+. -|.+.|++++|+|++ +.|++++.|++|+||+.
T Consensus 274 -------------------~~-~~~~l~---------------gH~~~V~~l~~spdg--~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 274 -------------------MA-KVAELK---------------GHTSRVLSLTMSPDG--ATVASAAADETLRLWRC 313 (318)
T ss_dssp -------------------CC-EEEEEC---------------CCSSCEEEEEECTTS--SCEEEEETTTEEEEECC
T ss_pred -------------------Cc-EEEEEc---------------CCCCCEEEEEEcCCC--CEEEEEecCCeEEEEEC
Confidence 00 111111 367889999999998 78999999999999985
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-26 Score=258.89 Aligned_cols=271 Identities=10% Similarity=0.031 Sum_probs=204.2
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC-----
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK----- 367 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~----- 367 (1019)
...+++..+++++.|+.|++|+.... +.+.++. .+.|.++.|+|. +++|+.|++|++|+...
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~-------~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~ 109 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDS-------KTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITIL 109 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSS-------SCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCC-------cEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEe
Confidence 34567889999999999999987632 3345554 567888999985 99999999999998742
Q ss_pred ---CcEEEEEe-cccCccEeEEEEcC--CCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEE-ccccccEe
Q psy307 368 ---ERRCVRTY-YGHRQAVRDICFNN--TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY-YGHRQAVR 440 (1019)
Q Consensus 368 ---~~~~~~~~-~gh~~~V~~i~fsp--dg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l-~~H~~~V~ 440 (1019)
....+..+ .+|...|.+++|+| ++ .++++|+.||+|++||+.. +.+.... ..|...|.
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~~i~ 174 (343)
T 3lrv_A 110 DSKTNKVLREIEVDSANEIIYMYGHNEVNT--------------EYFIWADNRGTIGFQSYED-DSQYIVHSAKSDVEYS 174 (343)
T ss_dssp ETTTCCEEEEEECCCSSCEEEEECCC---C--------------CEEEEEETTCCEEEEESSS-SCEEEEECCCSSCCCC
T ss_pred ecCCcceeEEeecCCCCCEEEEEcCCCCCC--------------CEEEEEeCCCcEEEEECCC-CcEEEEEecCCCCceE
Confidence 22223333 36778899999998 77 7999999999999999954 4445555 45566899
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCceE-EEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC
Q psy307 441 DICFNNTGTNFISAGYDRYLKLWDTESGECI-SRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN 519 (1019)
Q Consensus 441 sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i-~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd 519 (1019)
+++|+|++.+|++|+.||.|++||+++++.+ ..+.. .|...|.+++|+|+
T Consensus 175 ~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~-----------------------------~h~~~v~~l~fs~~ 225 (343)
T 3lrv_A 175 SGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV-----------------------------DEEAKIKEVKFADN 225 (343)
T ss_dssp EEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC-----------------------------CTTSCEEEEEECTT
T ss_pred EEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec-----------------------------cCCCCEEEEEEeCC
Confidence 9999999999999999999999999988765 43332 14467788889999
Q ss_pred CCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeeeeeccCC
Q psy307 520 NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA-DGKCYIWDWKTTKLFKKWKAHDG 598 (1019)
Q Consensus 520 g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~-DG~I~IWDl~t~~~l~~l~~h~~ 598 (1019)
|.+|++++ |+.|++||++.......+..+..|.......+++|+|+|++|++++. |+.|+||++.+....... .
T Consensus 226 g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~ 300 (343)
T 3lrv_A 226 GYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----D 300 (343)
T ss_dssp SSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----E
T ss_pred CCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----c
Confidence 99999999 55999999998754433443333321111146999999999999998 999999999766543332 4
Q ss_pred CEEEEEEcC---CCCcEEEEEeCCCcEEEEe
Q psy307 599 VCISTLWHP---HEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 599 ~V~sl~~sp---~~~~~l~s~s~Dg~I~iww 626 (1019)
++..+.|.+ +. ..+++++.||.+.++.
T Consensus 301 ~~~~~~~~~~~~~~-~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 301 EESALCLQSDTADF-TDMDVVCGDGGIAAIL 330 (343)
T ss_dssp EEEECCC----CCC-CEEEEEEETTEEEEEE
T ss_pred CceeEecCcccccc-ceeEEEecCCceEEEE
Confidence 677888988 55 5889999999998764
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-25 Score=264.20 Aligned_cols=237 Identities=14% Similarity=0.082 Sum_probs=190.2
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC-CcEEEEEec--ccCccEeEEEEcCCCCceeEEEeecCCCCcEE
Q psy307 332 EGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-ERRCVRTYY--GHRQAVRDICFNNTGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 332 ~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~-~~~~~~~~~--gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L 408 (1019)
.+|.+.|++++|+|++..++++|+.||.|+|||+.. .+.++..+. .|...|.+++|+|++ .+|
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--------------~~l 164 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD--------------TTV 164 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS--------------SEE
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC--------------CEE
Confidence 367778999999997444459999999999999952 455666665 567899999999998 689
Q ss_pred EEEeCCCcEEEEEccCCCe---EEEEEccccccEeEEEEecC---CCEEEEEEcCCeEEEEECCCCceEEEEecCCceEE
Q psy307 409 LSCSMDCRVKLWEVYKEHR---CVRTYYGHRQAVRDICFNNT---GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYC 482 (1019)
Q Consensus 409 ~sgs~Dg~I~IWDl~~~~~---~~~~l~~H~~~V~sl~fspd---g~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~ 482 (1019)
++|+.||.|++|++..... +...+.+|...|.+++|+|+ +++|++++.|++|++||+++++++..+.
T Consensus 165 ~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~------- 237 (450)
T 2vdu_B 165 IIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL------- 237 (450)
T ss_dssp EEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC-------
T ss_pred EEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee-------
Confidence 9999999999999954332 33467889999999999999 9999999999999999999887765532
Q ss_pred EEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEecc----------
Q psy307 483 VKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGH---------- 552 (1019)
Q Consensus 483 v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh---------- 552 (1019)
..+...|.+++|+ ++++|++++.|+.|++||+.++.. +..+..+
T Consensus 238 ----------------------~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~---~~~~~~~~~~~~~~~~~ 291 (450)
T 2vdu_B 238 ----------------------FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN---LSTFDYNSLIKPYLNDQ 291 (450)
T ss_dssp ----------------------CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE---EEEEECHHHHGGGCCTT
T ss_pred ----------------------cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE---eeeecchhhhhhhhhhc
Confidence 1234567788888 999999999999999999988743 3333321
Q ss_pred -------------ccccceEEEEEcCCCCEEEEEe-CCCeEEEEeC--CCC---ceeeeeeccCCCEEEEEEcCCCCcEE
Q psy307 553 -------------MVAGYACSLDFSPDMSYLISGD-ADGKCYIWDW--KTT---KLFKKWKAHDGVCISTLWHPHEPSKV 613 (1019)
Q Consensus 553 -------------~~~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl--~t~---~~l~~l~~h~~~V~sl~~sp~~~~~l 613 (1019)
.....+.+++|+|++++|++++ .|+.|+|||+ .++ +.+..+..| +.|.+++|+|++ ++
T Consensus 292 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~--~~ 368 (450)
T 2vdu_B 292 HLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE--FQ 368 (450)
T ss_dssp SBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE--EE
T ss_pred ccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc--EE
Confidence 1124688999999999999998 8999999999 665 677788888 789999999953 55
Q ss_pred EEEeC
Q psy307 614 VTAGW 618 (1019)
Q Consensus 614 ~s~s~ 618 (1019)
++++.
T Consensus 369 v~~~~ 373 (450)
T 2vdu_B 369 VTLDN 373 (450)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 55543
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-25 Score=243.83 Aligned_cols=263 Identities=18% Similarity=0.194 Sum_probs=215.9
Q ss_pred CCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC--cEEEE
Q psy307 296 YQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE--RRCVR 373 (1019)
Q Consensus 296 ~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~--~~~~~ 373 (1019)
++|+.+++++.|+.|++|+... .+....+.+|.+.|.+++|+|+ +.+|++|+.||.|++|++... .+.+.
T Consensus 27 ~~~~~l~s~~~dg~v~vw~~~~-------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~~~~~~~~~~~~~ 98 (313)
T 3odt_A 27 VDDSKVASVSRDGTVRLWSKDD-------QWLGTVVYTGQGFLNSVCYDSE-KELLLFGGKDTMINGVPLFATSGEDPLY 98 (313)
T ss_dssp EETTEEEEEETTSEEEEEEESS-------SEEEEEEEECSSCEEEEEEETT-TTEEEEEETTSCEEEEETTCCTTSCC-C
T ss_pred cCCCEEEEEEcCCcEEEEECCC-------CEEEEEeecCCccEEEEEECCC-CCEEEEecCCCeEEEEEeeecCCCCccc
Confidence 6788999999999999998752 3567888999999999999995 889999999999999998643 35677
Q ss_pred EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec-CCCEEE
Q psy307 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN-TGTNFI 452 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp-dg~~l~ 452 (1019)
.+.+|...|.+++| ++ .+|++++.||.|++|| .......+..|...|.+++|+| ++..++
T Consensus 99 ~~~~~~~~i~~~~~--~~--------------~~l~~~~~d~~i~~~d---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 159 (313)
T 3odt_A 99 TLIGHQGNVCSLSF--QD--------------GVVISGSWDKTAKVWK---EGSLVYNLQAHNASVWDAKVVSFSENKFL 159 (313)
T ss_dssp EECCCSSCEEEEEE--ET--------------TEEEEEETTSEEEEEE---TTEEEEEEECCSSCEEEEEEEETTTTEEE
T ss_pred chhhcccCEEEEEe--cC--------------CEEEEEeCCCCEEEEc---CCcEEEecccCCCceeEEEEccCCCCEEE
Confidence 88999999999998 33 5899999999999999 6778888999999999999998 899999
Q ss_pred EEEcCCeEEEEECCCCceEEEEe--cCCceEEEEEecCCCeeee---------ccC-CCceeeeCCCCCcccEEEEcCCC
Q psy307 453 SAGYDRYLKLWDTESGECISRFT--SRKVAYCVKFHPDEDKQHL---------DIP-VDMKYIADPTMHSMPAVTSSPNN 520 (1019)
Q Consensus 453 S~s~Dg~I~lWDl~t~~~i~~~~--~~~~v~~v~~~p~~~~~~~---------~~~-~~~~~i~~~~~~~i~~v~~spdg 520 (1019)
+++.||.|++|| .++....+. ....+.+++|+|++..... +.. .........+...+.+++|+|++
T Consensus 160 ~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 237 (313)
T 3odt_A 160 TASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG 237 (313)
T ss_dssp EEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred EEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC
Confidence 999999999999 455666665 4578899999998772211 221 11222334567789999999999
Q ss_pred CEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee
Q psy307 521 KWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK 594 (1019)
Q Consensus 521 ~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~ 594 (1019)
.|++++.||.|++||+.++ .....+..|. ..|.+++|+|+|+ +++++.||.|++||+.+++......
T Consensus 238 -~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~--~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 238 -DIVSCGEDRTVRIWSKENG---SLKQVITLPA--ISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp -CEEEEETTSEEEEECTTTC---CEEEEEECSS--SCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred -CEEEEecCCEEEEEECCCC---ceeEEEeccC--ceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 6889999999999999887 4456777776 6799999999998 5678999999999999987765543
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-25 Score=258.25 Aligned_cols=251 Identities=20% Similarity=0.300 Sum_probs=203.7
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.++++|+.+++|+.|+.|++|+... .+++.++.+|...|.+++++ +.+|++|+.|+.+++||.......+
T Consensus 154 ~fspdg~~lasgs~Dg~v~iWd~~~-------~~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~ 223 (420)
T 4gga_A 154 AWIKEGNYLAVGTSSAEVQLWDVQQ-------QKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHV 223 (420)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTT-------TEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEE
T ss_pred EECCCCCEEEEEECCCeEEEEEcCC-------CcEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceee
Confidence 4678999999999999999998763 46788999999999999985 4699999999999999998778888
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC---eEEEEEccccccEeEEEEecCCC
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH---RCVRTYYGHRQAVRDICFNNTGT 449 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~---~~~~~l~~H~~~V~sl~fspdg~ 449 (1019)
..+.+|...+..+.++|++ .++++++.|+.|++|+..... ..+.....|.+.|.+++|+|.+.
T Consensus 224 ~~~~~h~~~~~~~~~~~~g--------------~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~ 289 (420)
T 4gga_A 224 ATLSGHSQEVCGLRWAPDG--------------RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 289 (420)
T ss_dssp EEEECCSSCEEEEEECTTS--------------SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCT
T ss_pred EEecccccceeeeeecCCC--------------CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcc
Confidence 9999999999999999998 699999999999999995443 34677888999999999999766
Q ss_pred E-EEEE--EcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE
Q psy307 450 N-FISA--GYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ 526 (1019)
Q Consensus 450 ~-l~S~--s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg 526 (1019)
. ++++ +.|++|++||+.+++++..+..+..+.+ +.++|+++.++++
T Consensus 290 ~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~-------------------------------~~~~~~~~~lv~~ 338 (420)
T 4gga_A 290 NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS-------------------------------ILWSPHYKELISG 338 (420)
T ss_dssp TEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEE-------------------------------EEEETTTTEEEEE
T ss_pred cEEEEEeecCCCEEEEEeCCccccceeeccccceee-------------------------------eeecCCCCeEEEE
Confidence 4 4443 4799999999999999888776655544 4455666777765
Q ss_pred e--cCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEE
Q psy307 527 S--MDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCIST 603 (1019)
Q Consensus 527 s--~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl 603 (1019)
+ .||.|+|||+.++ ..+..+.+|. +.|.+++|+|||++|+||+.||+|+|||+....+....+.+...+...
T Consensus 339 sg~~d~~I~iwd~~~~---~~v~~l~gH~--~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~ 412 (420)
T 4gga_A 339 HGFAQNQLVIWKYPTM---AKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKS 412 (420)
T ss_dssp ECTTTCCEEEEETTTC---CEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-------------
T ss_pred EecCCCEEEEEECCCC---cEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccc
Confidence 4 7899999999887 4567889997 779999999999999999999999999998877766666555444333
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-24 Score=244.11 Aligned_cols=273 Identities=8% Similarity=0.092 Sum_probs=213.6
Q ss_pred CeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEeccc
Q psy307 299 RSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGH 378 (1019)
Q Consensus 299 r~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh 378 (1019)
..++++..|+.|++|+... .+++..+.+|. .+.+++|+|++..++++++.|+.|++||+ ..++++..+..+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~-------~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~-~~~~~~~~~~~~ 73 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS-------NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDT-ATNNVIATVPAG 73 (391)
T ss_dssp EEEEEETTTTEEEEEETTT-------TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEET-TTTEEEEEEECS
T ss_pred EEEEEcCCCCEEEEEECCC-------CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEEC-CCCeEEEEEECC
Confidence 4678889999999998753 35677788776 58999999975556688889999999999 556777777665
Q ss_pred CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEE-EEEEcC
Q psy307 379 RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNF-ISAGYD 457 (1019)
Q Consensus 379 ~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l-~S~s~D 457 (1019)
. .+.+++|+|++. .++++++.++.|++||+ ..++.+..+..| ..+.+++|+|+++.+ ++++.|
T Consensus 74 ~-~v~~~~~spdg~-------------~l~~~~~~~~~v~v~d~-~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~ 137 (391)
T 1l0q_A 74 S-SPQGVAVSPDGK-------------QVYVTNMASSTLSVIDT-TSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGD 137 (391)
T ss_dssp S-SEEEEEECTTSS-------------EEEEEETTTTEEEEEET-TTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTT
T ss_pred C-CccceEECCCCC-------------EEEEEECCCCEEEEEEC-CCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCC
Confidence 5 899999999883 34456667899999999 556666666654 468999999999987 677789
Q ss_pred CeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEE-EEEecCCeEEEEE
Q psy307 458 RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWL-ACQSMDNKILIFS 536 (1019)
Q Consensus 458 g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~L-asgs~Dg~I~iwd 536 (1019)
+.|++||+.+++++..+..+..+ ..++|+|+++++ ++++.++.|++||
T Consensus 138 ~~v~~~d~~~~~~~~~~~~~~~~-------------------------------~~~~~~~dg~~l~~~~~~~~~v~~~d 186 (391)
T 1l0q_A 138 KTVSVINTVTKAVINTVSVGRSP-------------------------------KGIAVTPDGTKVYVANFDSMSISVID 186 (391)
T ss_dssp TEEEEEETTTTEEEEEEECCSSE-------------------------------EEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCcEEEEEecCCCc-------------------------------ceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 99999999999887776654433 355667778777 5777889999999
Q ss_pred ccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEE
Q psy307 537 ALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD---ADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKV 613 (1019)
Q Consensus 537 ~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs---~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l 613 (1019)
+.++. ....+..+ ..+.+++|+|+|++|++++ .++.|++||+.+++.+..+..|. .+.+++|+|++..++
T Consensus 187 ~~~~~---~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~ 259 (391)
T 1l0q_A 187 TVTNS---VIDTVKVE---AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVY 259 (391)
T ss_dssp TTTTE---EEEEEECS---SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEE
T ss_pred CCCCe---EEEEEecC---CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEE
Confidence 98763 23344332 4688999999999999888 68999999999999999988776 478999999986555
Q ss_pred EEEeCCCcEEEEeccceeeeee
Q psy307 614 VTAGWDAATAKVQDANIVKIAV 635 (1019)
Q Consensus 614 ~s~s~Dg~I~iwwd~~i~ki~~ 635 (1019)
++++.|+.|++ |+....+...
T Consensus 260 ~s~~~d~~v~v-~d~~~~~~~~ 280 (391)
T 1l0q_A 260 VALSFXNTVSV-IDTATNTITA 280 (391)
T ss_dssp EEETTTTEEEE-EETTTTEEEE
T ss_pred EEcCCCCEEEE-EECCCCcEEE
Confidence 78889999866 4555444433
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-24 Score=240.31 Aligned_cols=259 Identities=12% Similarity=0.128 Sum_probs=184.4
Q ss_pred eEEEEEcCCCC-c-EEEEeeCCCeEEEEecCCCc--EEEEEecccCccEeEEEEcCCCCcee------------EEEeec
Q psy307 338 ISAIRWFPKSA-H-LLLSCSMDCRVKLWEVYKER--RCVRTYYGHRQAVRDICFNNTGTNFI------------SAIRWF 401 (1019)
Q Consensus 338 V~~i~fspd~g-~-lLaSgs~Dg~I~IWdl~~~~--~~~~~~~gh~~~V~~i~fspdg~~~v------------s~i~~~ 401 (1019)
|.++.|-..+. . .+++++ ...|++|+..... ++++++.+|..+|..+.+.||...++ .+++++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 55666644322 2 445554 5799999995542 88999999999999999999766553 346677
Q ss_pred CCC---CcEEEEEe--------------------CCCcEEEEEccCCCeEEEEEccccccEeEEEEec---CCCEEEEEE
Q psy307 402 PKS---AHLLLSCS--------------------MDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN---TGTNFISAG 455 (1019)
Q Consensus 402 p~~---~~~L~sgs--------------------~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp---dg~~l~S~s 455 (1019)
|++ ...+++++ .|+.|++|++...++.+..+.+|...+..++|++ ++..|++++
T Consensus 121 pd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS 200 (356)
T 2w18_A 121 SDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTT 200 (356)
T ss_dssp -----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEE
T ss_pred CCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEec
Confidence 761 23333333 3999999999887888899999999999999999 779999999
Q ss_pred cCCeEEEEECCCCceEEEEecCC----ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC-CEEEEEecCC
Q psy307 456 YDRYLKLWDTESGECISRFTSRK----VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN-KWLACQSMDN 530 (1019)
Q Consensus 456 ~Dg~I~lWDl~t~~~i~~~~~~~----~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg-~~Lasgs~Dg 530 (1019)
.|++|+|||+.+|+++.++..+. .+.+++|+|++...+... ++.+ ..+++|+.|+
T Consensus 201 ~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s--------------------~~~~~w~laSGs~D~ 260 (356)
T 2w18_A 201 IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLS--------------------HPCAKESESLRSPVF 260 (356)
T ss_dssp TTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC--------------------------------CCE
T ss_pred CCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEec--------------------cCCCcceeeccCCCc
Confidence 99999999999999999997432 345566777654221100 1111 2367899999
Q ss_pred eEEEEEccCcccccceeEE-----eccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEE-EEE
Q psy307 531 KILIFSALNRFKLNRKKTF-----EGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCI-STL 604 (1019)
Q Consensus 531 ~I~iwd~~~~~~~~~~~~l-----~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~-sl~ 604 (1019)
+|++||..++..+ ..+ .+|. +.+.+..+ ++.++++|+.||+|+|||+.+++++.++.+|...+. +++
T Consensus 261 tIklWd~~tgk~l---~v~~~~~p~Gh~--~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~va 333 (356)
T 2w18_A 261 QLIVINPKTTLSV---GVMLYCLPPGQA--GRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVK 333 (356)
T ss_dssp EEEEEETTTTEEE---EEEEECCCTTCC--CCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEE
T ss_pred EEEEEECCCCEEE---EEEEeeccCCCc--ceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEE
Confidence 9999999877433 222 3554 33444444 488999999999999999999999999999987655 589
Q ss_pred EcCCCCcEEEEEeCCCcEEEE
Q psy307 605 WHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 605 ~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
|+|+| .+|++|+.|++|++|
T Consensus 334 fSPDG-~~LaSGS~D~TIklW 353 (356)
T 2w18_A 334 WSGTD-SHLLAGQKDGNIFVY 353 (356)
T ss_dssp ECSSS-SEEEEECTTSCEEEE
T ss_pred ECCCC-CEEEEEECCCcEEEe
Confidence 99998 699999999999887
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=255.69 Aligned_cols=241 Identities=12% Similarity=0.087 Sum_probs=178.1
Q ss_pred CCeeeeCCCCCceeeecCCCCCCccC--CccceeeeccCCCCeEEEEEcCCCCcEEE--EeeCCCeEEEEecCCCcEEEE
Q psy307 298 GRSFLHPPHDVGTNLRSDTPPDRCFL--PKTQVHTWEGHTKGISAIRWFPKSAHLLL--SCSMDCRVKLWEVYKERRCVR 373 (1019)
Q Consensus 298 gr~~~~~~~D~~v~lw~~~~~~~~~l--p~~~i~~l~gH~~~V~~i~fspd~g~lLa--Sgs~Dg~I~IWdl~~~~~~~~ 373 (1019)
+..++.+..|..+++|+......... ..........+...|.+++|+|| |++|+ +++.|++|+|||+ ...+++.
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD-g~~la~as~~~d~~i~iwd~-~~~~~~~ 171 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE-GTVAAIASSKVPAIMRIIDP-SDLTEKF 171 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT-SSCEEEEESCSSCEEEEEET-TTTEEEE
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC-CCEEEEEECCCCCEEEEeEC-CCCcEEE
Confidence 34456667788888887653321111 11112223455667999999997 66654 5568999999999 4556666
Q ss_pred EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEE-EEEccccccEeEEEEecCCCEEE
Q psy307 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCV-RTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
.+. |...|.+++|+|+| ++|++++.++ +++|+........ ....+|...|.+++|+|+++.++
T Consensus 172 ~~~-~~~~V~~v~fspdg--------------~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~ 235 (365)
T 4h5i_A 172 EIE-TRGEVKDLHFSTDG--------------KVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLI 235 (365)
T ss_dssp EEE-CSSCCCEEEECTTS--------------SEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEE
T ss_pred EeC-CCCceEEEEEccCC--------------ceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEE
Confidence 664 77889999999999 6888888555 5555554444433 44567999999999999999999
Q ss_pred EEEcCC----eEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec
Q psy307 453 SAGYDR----YLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM 528 (1019)
Q Consensus 453 S~s~Dg----~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~ 528 (1019)
+++.|+ .+++||+..+....... .....+...|.+++|+|+|++||+|+.
T Consensus 236 ~~s~d~~~~~~i~~~~~~~~~~~~~~~--------------------------~~~~~~~~~V~~~~~Spdg~~lasgs~ 289 (365)
T 4h5i_A 236 AASLKKGKGIVLTKISIKSGNTSVLRS--------------------------KQVTNRFKGITSMDVDMKGELAVLASN 289 (365)
T ss_dssp EEEESSSCCEEEEEEEEETTEEEEEEE--------------------------EEEESSCSCEEEEEECTTSCEEEEEET
T ss_pred EEecCCcceeEEeecccccceecceee--------------------------eeecCCCCCeEeEEECCCCCceEEEcC
Confidence 999987 68889877654321110 111234466888999999999999999
Q ss_pred CCeEEEEEccCcccccceeE-EeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy307 529 DNKILIFSALNRFKLNRKKT-FEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTT 587 (1019)
Q Consensus 529 Dg~I~iwd~~~~~~~~~~~~-l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~ 587 (1019)
|++|+|||+.++ ..+.. +.+|. ..|++++|||||++||+|+.|++|+|||+...
T Consensus 290 D~~V~iwd~~~~---~~~~~~~~gH~--~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 290 DNSIALVKLKDL---SMSKIFKQAHS--FAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TSCEEEEETTTT---EEEEEETTSSS--SCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCEEEEEECCCC---cEEEEecCccc--CCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999887 33455 46787 77999999999999999999999999999643
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=260.87 Aligned_cols=273 Identities=16% Similarity=0.228 Sum_probs=206.8
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCC---------CeEEEEEccccccEeEEE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE---------HRCVRTYYGHRQAVRDIC 443 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~---------~~~~~~l~~H~~~V~sl~ 443 (1019)
....+|.+.|++++|+|++. .+|++|+.||.|++||+... ......+.+|...|.+++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~-------------~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 188 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNA-------------CVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLS 188 (430)
T ss_dssp EEEEEESSCCSEEEEETTEE-------------EEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEE
T ss_pred EEEEcCCCcEEEEEECCCCC-------------cEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEE
Confidence 44567888888888888632 78999999999999999652 567788899999999999
Q ss_pred EecCCC-EEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC-CCC
Q psy307 444 FNNTGT-NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP-NNK 521 (1019)
Q Consensus 444 fspdg~-~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp-dg~ 521 (1019)
|+|++. +|++|+.||+|++||+.++....... ........+...|.+++|+| ++.
T Consensus 189 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----------------------~~~~~~~~h~~~v~~v~~~p~~~~ 245 (430)
T 2xyi_A 189 WNPNLNGYLLSASDDHTICLWDINATPKEHRVI-----------------------DAKNIFTGHTAVVEDVAWHLLHES 245 (430)
T ss_dssp ECTTSTTEEEEECTTSCEEEEETTSCCBGGGEE-----------------------ECSEEECCCSSCEEEEEECSSCTT
T ss_pred eCCCCCCeEEEEeCCCeEEEEeCCCCCCCCcee-----------------------ccceeecCCCCCEeeeEEeCCCCC
Confidence 999998 99999999999999998743110000 00112234556788899998 678
Q ss_pred EEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCC-EEEEEeCCCeEEEEeCCC-CceeeeeeccCCC
Q psy307 522 WLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMS-YLISGDADGKCYIWDWKT-TKLFKKWKAHDGV 599 (1019)
Q Consensus 522 ~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~-~Lasgs~DG~I~IWDl~t-~~~l~~l~~h~~~ 599 (1019)
+|++++.||.|++||+++.........+..|. ..|.+++|+|++. ++++|+.||.|++||+++ +.++..+.+|.+.
T Consensus 246 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~ 323 (430)
T 2xyi_A 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT--AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE 323 (430)
T ss_dssp EEEEEETTSEEEEEETTCSCSSSCSEEEECCS--SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC
T ss_pred EEEEEeCCCeEEEEECCCCCCCcceeEeecCC--CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC
Confidence 99999999999999999764334556677776 6799999999997 689999999999999998 5678899999999
Q ss_pred EEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecC
Q psy307 600 CISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSET 679 (1019)
Q Consensus 600 V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~ 679 (1019)
|.+++|+|++..++++++.||+|++|.-....... ..... .. .+......+
T Consensus 324 v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~-----------------~~~~~-~~--------~~~~~~~~~--- 374 (430)
T 2xyi_A 324 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ-----------------STEDA-ED--------GPPELLFIH--- 374 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCC-----------------CHHHH-HH--------CCTTEEEEC---
T ss_pred EEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcccc-----------------Ccccc-cc--------CCcceEEEc---
Confidence 99999999997789999999999776322211000 00000 00 001111111
Q ss_pred CCceEEeccccccccCCceEEEEecCCccHH-HHHhhcCCCchhhHHH
Q psy307 680 NNKNYITEKNRNEIKNGSVLRLAFSASKTAD-DILSKLSDKNASLEEK 726 (1019)
Q Consensus 680 ~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~-~Ilt~~~d~~i~lw~~ 726 (1019)
.-|.+.|.+++|+|++ + .|+++..|+.|++|+.
T Consensus 375 ------------~~h~~~v~~~~~~p~~--~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 375 ------------GGHTAKISDFSWNPNE--PWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp ------------CCCSSCEEEEEECSSS--TTEEEEEETTSEEEEEEE
T ss_pred ------------CCCCCCceEEEECCCC--CCEEEEEECCCCEEEeEc
Confidence 1356789999999998 5 7889999999999984
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.5e-24 Score=246.42 Aligned_cols=296 Identities=13% Similarity=0.116 Sum_probs=229.0
Q ss_pred eeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEE-----Ee
Q psy307 301 FLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVR-----TY 375 (1019)
Q Consensus 301 ~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~-----~~ 375 (1019)
++.+..++.+.+|....... ..+.+..+..|. .+.+++|+| ++.++++++.|+.|++||+.. ++... .+
T Consensus 92 ~~~~~~~~~~~l~~~d~~~~---~~~~~~~~~~~~-~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~ 165 (433)
T 3bws_A 92 RIRKPEELNEKLIALDKEGI---THRFISRFKTGF-QPKSVRFID-NTRLAIPLLEDEGMDVLDINS-GQTVRLSPPEKY 165 (433)
T ss_dssp EESSGGGGTTCEEECCBTTC---SEEEEEEEECSS-CBCCCEESS-SSEEEEEBTTSSSEEEEETTT-CCEEEECCCHHH
T ss_pred eecccCCCceEEEEECCCCC---cceEEEEEcCCC-CceEEEEeC-CCeEEEEeCCCCeEEEEECCC-CeEeeecCcccc
Confidence 34566677677776543211 124455666654 466999999 689999999999999999944 45555 45
Q ss_pred cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEE
Q psy307 376 YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG 455 (1019)
Q Consensus 376 ~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s 455 (1019)
.+|...|.+++|++++ .++++++.|+.|++||+ ..++.+..+..|...+.+++|+|+++.+++++
T Consensus 166 ~~~~~~v~~~~~~~~~--------------~~~~s~~~d~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (433)
T 3bws_A 166 KKKLGFVETISIPEHN--------------ELWVSQMQANAVHVFDL-KTLAYKATVDLTGKWSKILLYDPIRDLVYCSN 230 (433)
T ss_dssp HTTCCEEEEEEEGGGT--------------EEEEEEGGGTEEEEEET-TTCCEEEEEECSSSSEEEEEEETTTTEEEEEE
T ss_pred cccCCceeEEEEcCCC--------------EEEEEECCCCEEEEEEC-CCceEEEEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 5888999999999888 78999999999999999 56677788889999999999999999886555
Q ss_pred -cCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccC--------CCceeeeCC----------CCCcccEEEE
Q psy307 456 -YDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIP--------VDMKYIADP----------TMHSMPAVTS 516 (1019)
Q Consensus 456 -~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~--------~~~~~i~~~----------~~~~i~~v~~ 516 (1019)
.|+.|++||+++++.+..+..+..+.+++|+|++...++... .....+.+. +...+..++|
T Consensus 231 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 310 (433)
T 3bws_A 231 WISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVS 310 (433)
T ss_dssp TTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEE
T ss_pred cCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEE
Confidence 799999999999999999988888999999999876655321 111112221 1235678999
Q ss_pred cCCCCEE-EEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC---------------CCeEE
Q psy307 517 SPNNKWL-ACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA---------------DGKCY 580 (1019)
Q Consensus 517 spdg~~L-asgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~---------------DG~I~ 580 (1019)
+|+++.+ ++++.|+.|++||+.++.. ...+. +. ..+.+++|+|+|++|++++. ||.|+
T Consensus 311 ~~~g~~l~~~~~~~~~v~v~d~~~~~~---~~~~~-~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~ 384 (433)
T 3bws_A 311 GNTENKIYVSDMCCSKIEVYDLKEKKV---QKSIP-VF--DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVY 384 (433)
T ss_dssp CSSTTEEEEEETTTTEEEEEETTTTEE---EEEEE-CS--SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEE
T ss_pred CCCCCEEEEEecCCCEEEEEECCCCcE---EEEec-CC--CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEE
Confidence 9999755 6668999999999987632 33443 22 56889999999999888876 57999
Q ss_pred EEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEe-CCCcEEEE
Q psy307 581 IWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAG-WDAATAKV 625 (1019)
Q Consensus 581 IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s-~Dg~I~iw 625 (1019)
+||+.+++.+..+..+ ..+.+++|+|++. ++++++ .|++|.+|
T Consensus 385 ~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~-~l~~~~~~d~~i~v~ 428 (433)
T 3bws_A 385 VIDTTTDTVKEFWEAG-NQPTGLDVSPDNR-YLVISDFLDHQIRVY 428 (433)
T ss_dssp EEETTTTEEEEEEECS-SSEEEEEECTTSC-EEEEEETTTTEEEEE
T ss_pred EEECCCCcEEEEecCC-CCCceEEEcCCCC-EEEEEECCCCeEEEE
Confidence 9999999999888764 4789999999984 666655 59999776
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-24 Score=241.67 Aligned_cols=270 Identities=10% Similarity=0.111 Sum_probs=189.1
Q ss_pred ccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCC
Q psy307 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKS 404 (1019)
Q Consensus 325 ~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~ 404 (1019)
.+.+.++.+|.+.|++++|+|+ +.+|++|+.|| ++||++. ......... ...+..+++.+++.
T Consensus 9 ~~~~~~~~~h~~~V~~v~fs~d-g~~la~g~~~~-~~iw~~~-~~~~~~~~~--~~~~~~~~~~~~~~------------ 71 (355)
T 3vu4_A 9 RNPIVPENHVSNPVTDYEFNQD-QSCLILSTLKS-FEIYNVH-PVAHIMSQE--MRHLSKVRMLHRTN------------ 71 (355)
T ss_dssp ----------CCCCCEEEECTT-SSEEEEECSSE-EEEEEET-TEEEEEEEE--CSCCCEEEECTTSS------------
T ss_pred cCCccccccCCCceEEEEECCC-CCEEEEEcCCE-EEEEecC-Ccceeeeee--cCCeEEEEEcCCCC------------
Confidence 3456678999999999999996 78999888775 7899984 344333322 22466666666652
Q ss_pred CcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEEEecCCceEEE
Q psy307 405 AHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESG-ECISRFTSRKVAYCV 483 (1019)
Q Consensus 405 ~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~-~~i~~~~~~~~v~~v 483 (1019)
.++++|+.|++|++||+ ..++++..+. |...|.+++|+++. ++++ .|+.|++||+.++ +.+..+.. ....+
T Consensus 72 -~~~~~~~~d~~v~iWd~-~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~ 143 (355)
T 3vu4_A 72 -YVAFVTGVKEVVHIWDD-VKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR--FGGVC 143 (355)
T ss_dssp -EEEEECSSTTEEEEEET-TTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEE
T ss_pred -EEEEEECCccEEEEEEC-CCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc--CCceE
Confidence 45577888999999999 5566777665 67799999998754 4443 5899999999988 55444433 22222
Q ss_pred EEe----------cCCCeeeeccCCCc-----------------eeeeCCCCCcccEEEEcCCCCEEEEEecCCe-EEEE
Q psy307 484 KFH----------PDEDKQHLDIPVDM-----------------KYIADPTMHSMPAVTSSPNNKWLACQSMDNK-ILIF 535 (1019)
Q Consensus 484 ~~~----------p~~~~~~~~~~~~~-----------------~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~-I~iw 535 (1019)
+++ .++...+++..... ......|...|.+++|+|+|++|++|+.||+ |++|
T Consensus 144 ~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iw 223 (355)
T 3vu4_A 144 EFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVF 223 (355)
T ss_dssp EEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred EEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 222 23334444443322 3445678889999999999999999999998 9999
Q ss_pred EccCcccccceeEEe-c-cccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--eeee-----------------
Q psy307 536 SALNRFKLNRKKTFE-G-HMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLF--KKWK----------------- 594 (1019)
Q Consensus 536 d~~~~~~~~~~~~l~-g-h~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l--~~l~----------------- 594 (1019)
|+.++ ..+..+. + |. +.|.+++|+|+|++|++|+.||+|+|||+..+... ..+.
T Consensus 224 d~~~~---~~~~~~~~g~h~--~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (355)
T 3vu4_A 224 KTEDG---VLVREFRRGLDR--ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNF 298 (355)
T ss_dssp ETTTC---CEEEEEECTTCC--SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEE
T ss_pred ECCCC---cEEEEEEcCCCC--CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEE
Confidence 99987 3456676 4 65 77999999999999999999999999999765321 1110
Q ss_pred ----ccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 595 ----AHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 595 ----~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.+......++|++++ ..+++++.||.+.+|
T Consensus 299 ~~~~~~~~~~~~~a~~~d~-~~l~~~~~dg~~~~~ 332 (355)
T 3vu4_A 299 KLSVDKHVRGCKIAWISES-SLVVVWPHTRMIETF 332 (355)
T ss_dssp ECCCCTTCCCCEEEESSSS-EEEEEETTTTEEEEE
T ss_pred EeccCCCCCceEEEEeCCC-CEEEEEeCCCeEEEE
Confidence 111233668999998 689999999998776
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-24 Score=242.12 Aligned_cols=224 Identities=9% Similarity=0.012 Sum_probs=171.0
Q ss_pred CCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccC--
Q psy307 347 SAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-- 424 (1019)
Q Consensus 347 ~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~-- 424 (1019)
++.+|++|+.||+|++||+.. ++.+..+. ...|.++.| +|. +++|+.|++|++|+...
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~-~~~~~~~~--~~~v~~~~~-------------~~~----~~s~s~D~~i~~w~~~~~~ 106 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKD-SKTITTIT--TPNPRTGGE-------------HPA----IISRGPCNRLLLLYPGNQI 106 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESS-SSCEEEEE--EECCCTTCC-------------CCS----EEEECSTTEEEEEETTTEE
T ss_pred CCCEEEEECCCCcEEEEECCC-CcEEEEEe--cCCceeeee-------------CCc----eEEecCCCeEEEEEccCce
Confidence 378999999999999999944 44455444 234444444 343 89999999999997642
Q ss_pred ------CCeEEEE-EccccccEeEEEEec--CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeec
Q psy307 425 ------EHRCVRT-YYGHRQAVRDICFNN--TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLD 495 (1019)
Q Consensus 425 ------~~~~~~~-l~~H~~~V~sl~fsp--dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~ 495 (1019)
....+.. ..+|.+.|.+++|+| ++++|++++.||+|++||+++++++.....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~------------------- 167 (343)
T 3lrv_A 107 TILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA------------------- 167 (343)
T ss_dssp EEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC-------------------
T ss_pred EEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec-------------------
Confidence 2332333 347788999999999 999999999999999999999887544322
Q ss_pred cCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEec-cccccceEEEEEcCCCCEEEEEe
Q psy307 496 IPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEG-HMVAGYACSLDFSPDMSYLISGD 574 (1019)
Q Consensus 496 ~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~g-h~~~~~V~~v~fspdg~~Lasgs 574 (1019)
.+...+.+++|+|+|.+|++|+.||.|++||++++... ...+.+ |. +.|.+++|+|+|.+|++|+
T Consensus 168 ----------~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~--~~~~~~~h~--~~v~~l~fs~~g~~l~s~~ 233 (343)
T 3lrv_A 168 ----------KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA--SSRFPVDEE--AKIKEVKFADNGYWMVVEC 233 (343)
T ss_dssp ----------CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC--CEECCCCTT--SCEEEEEECTTSSEEEEEE
T ss_pred ----------CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC--ccEEeccCC--CCEEEEEEeCCCCEEEEEe
Confidence 12245788999999999999999999999999987322 145566 76 7899999999999999999
Q ss_pred CCCeEEEEeCCCCceeeeeec---cCCCEE--EEEEcCCCCcEEEEEeC-CCcEEEE
Q psy307 575 ADGKCYIWDWKTTKLFKKWKA---HDGVCI--STLWHPHEPSKVVTAGW-DAATAKV 625 (1019)
Q Consensus 575 ~DG~I~IWDl~t~~~l~~l~~---h~~~V~--sl~~sp~~~~~l~s~s~-Dg~I~iw 625 (1019)
|+.|+|||+++++.+..+.. |...+. +++|+|++ .++++++. |+.|++|
T Consensus 234 -~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~s~~d~~i~v~ 288 (343)
T 3lrv_A 234 -DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG-KNMIAYSNESNSLTIY 288 (343)
T ss_dssp -SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTS-SEEEEEETTTTEEEEE
T ss_pred -CCeEEEEEcCCCCcceeecccccccccccceEEEECCCC-CEEEEecCCCCcEEEE
Confidence 55999999999987766554 444444 69999998 68888888 9998776
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.3e-25 Score=274.71 Aligned_cols=250 Identities=20% Similarity=0.257 Sum_probs=202.8
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCC-CcEEEEeeCCCeEEEEecCCCc-E
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKS-AHLLLSCSMDCRVKLWEVYKER-R 370 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~-g~lLaSgs~Dg~I~IWdl~~~~-~ 370 (1019)
.++++|+.+++++.|+.|++|+.... ..+.+.++.+|.+.|++++|+|+. +.+|++|+.||.|++||+.... .
T Consensus 16 ~~s~dg~~latg~~dg~I~vwd~~~~-----~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~ 90 (753)
T 3jro_A 16 VLDYYGKRLATCSSDKTIKIFEVEGE-----THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS 90 (753)
T ss_dssp CCCSSSCCEEEEETTTEEEEEEEETT-----EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEE
T ss_pred EECCCCCeEEEEECCCcEEEEecCCC-----CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccc
Confidence 46788999999999999999987532 235678999999999999999853 7899999999999999995542 3
Q ss_pred EEEEecccCccEeEEEEcCC--CCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC-eEEEEEccccccEeEEEEec-
Q psy307 371 CVRTYYGHRQAVRDICFNNT--GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH-RCVRTYYGHRQAVRDICFNN- 446 (1019)
Q Consensus 371 ~~~~~~gh~~~V~~i~fspd--g~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~fsp- 446 (1019)
.+..+.+|...|.+++|+|+ + .++++|+.||.|++||+.... .....+.+|...|.+++|+|
T Consensus 91 ~~~~~~~h~~~V~~v~~sp~~~~--------------~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~ 156 (753)
T 3jro_A 91 QIAVHAVHSASVNSVQWAPHEYG--------------PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (753)
T ss_dssp EEEEECCCSSCEEEEEECCGGGC--------------SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred ccccccCCCCCeEEEEECCCCCC--------------CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence 67788899999999999998 6 799999999999999996552 34556788999999999999
Q ss_pred ------------CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEE
Q psy307 447 ------------TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAV 514 (1019)
Q Consensus 447 ------------dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v 514 (1019)
++..|++|+.||+|++||++++....... .....|...|.++
T Consensus 157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~--------------------------~~~~~h~~~V~~l 210 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE--------------------------STLEGHSDWVRDV 210 (753)
T ss_dssp C---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE--------------------------EEECCCSSCEEEE
T ss_pred ccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee--------------------------eeecCCCCcEEEE
Confidence 58999999999999999998764221110 1112345678888
Q ss_pred EEcCC---CCEEEEEecCCeEEEEEccCcccccc--eeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q psy307 515 TSSPN---NKWLACQSMDNKILIFSALNRFKLNR--KKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKL 589 (1019)
Q Consensus 515 ~~spd---g~~Lasgs~Dg~I~iwd~~~~~~~~~--~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~ 589 (1019)
+|+|+ +.+|++++.||.|++||+.++..... .....+|. +.|.+++|+|+|++|++|+.||.|+|||+.++..
T Consensus 211 ~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~--~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 211 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP--DVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp EECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCS--SCCCCEEECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred EeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCC--CceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence 88999 89999999999999999987532211 12222343 6789999999999999999999999999986543
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-25 Score=254.53 Aligned_cols=256 Identities=9% Similarity=0.074 Sum_probs=178.7
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcC-------CCCcEEEEeeCCCeEEEEecC
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFP-------KSAHLLLSCSMDCRVKLWEVY 366 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fsp-------d~g~lLaSgs~Dg~I~IWdl~ 366 (1019)
....++.+++++.|++|+||+...... .....+.++.||++.|++|+|+| .++++|+|||.|++|+|||+.
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~--~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETI--ITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEE--EEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCcc--ceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 455677899999999999998764321 12235667899999999999987 237899999999999999994
Q ss_pred CCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEE-----------------
Q psy307 367 KERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCV----------------- 429 (1019)
Q Consensus 367 ~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~----------------- 429 (1019)
. ..++..+.+|...|.+++|+|++. .+|++|+.||+|++||+.......
T Consensus 175 ~-~~~~~~~~~~~~~v~~v~~~p~~~-------------~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~ 240 (393)
T 4gq1_A 175 D-EGPILAGYPLSSPGISVQFRPSNP-------------NQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLN 240 (393)
T ss_dssp T-TEEEEEEEECSSCEEEEEEETTEE-------------EEEEEEETTSEEEEEETTCCC----------CSCCCSEEEE
T ss_pred C-CceeeeecCCCCCcEEEEECCCCC-------------ceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecc
Confidence 4 456667778889999999998773 589999999999999995443211
Q ss_pred -------EEEccccccEeEEEEe-cCCCEEEEEEcCCeEEEEECCCCceEEEEecC-CceEEEEEecCCCeeeeccCCCc
Q psy307 430 -------RTYYGHRQAVRDICFN-NTGTNFISAGYDRYLKLWDTESGECISRFTSR-KVAYCVKFHPDEDKQHLDIPVDM 500 (1019)
Q Consensus 430 -------~~l~~H~~~V~sl~fs-pdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~-~~v~~v~~~p~~~~~~~~~~~~~ 500 (1019)
....+|...|.++.|+ ++++.|++++.|+++++||+.++.....+..+ ..+..+.+.|+....
T Consensus 241 ~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------- 312 (393)
T 4gq1_A 241 TLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGI-------- 312 (393)
T ss_dssp SGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEE--------
T ss_pred cccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccc--------
Confidence 1234688889999987 79999999999999999999988776666433 334444444442211
Q ss_pred eeeeCCCCCcccEEEEcC--CCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCe
Q psy307 501 KYIADPTMHSMPAVTSSP--NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGK 578 (1019)
Q Consensus 501 ~~i~~~~~~~i~~v~~sp--dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~ 578 (1019)
... .......++| ++.++++|+.||.|++||+.++. ....+.+|. ..|.+++|+|||++||+++.+|
T Consensus 313 ----~~~-~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~---~~~~~~~~~--~~V~svafspdG~~LA~as~~G- 381 (393)
T 4gq1_A 313 ----SLF-PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD---SNSIPIQLG--MPIVDFCWHQDGSHLAIATEGS- 381 (393)
T ss_dssp ----CSS-CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT---CCEEEEECS--SCEEEEEECTTSSEEEEEESSE-
T ss_pred ----ccc-CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc---EEEEecCCC--CcEEEEEEcCCCCEEEEEeCCC-
Confidence 111 1222333443 45567788899999999998773 335555665 6799999999999999998777
Q ss_pred EEEEeC
Q psy307 579 CYIWDW 584 (1019)
Q Consensus 579 I~IWDl 584 (1019)
+.+|.+
T Consensus 382 v~lvrL 387 (393)
T 4gq1_A 382 VLLTRL 387 (393)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 555654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-25 Score=260.49 Aligned_cols=299 Identities=9% Similarity=0.047 Sum_probs=205.1
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEE
Q psy307 332 EGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSC 411 (1019)
Q Consensus 332 ~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sg 411 (1019)
+.-...|.+|+|+|| |+++||++.|++|+ |. ... ..+.+|.+.|.+++|+|+|
T Consensus 12 ~~~~~~v~sv~~SpD-G~~iASas~D~TV~--d~-~~~---~~l~gh~~~v~~V~FsPdg-------------------- 64 (588)
T 2j04_A 12 KEFEDWKNNLTWARD-GTLYLTTFPDISIG--QP-KYA---KDINCNSKNLFHVKEFPLE-------------------- 64 (588)
T ss_dssp CCCSSSSCCEEECTT-SCEEEECSSSEEEE--EE-CCC---SCCSSBGGGTEEEEEECCC--------------------
T ss_pred hHhhccEEEEEECCC-CCEEEEEcCCceee--cc-ccc---ceecCCCccEEEEEECCCC--------------------
Confidence 344578999999996 89999999999999 65 222 3447999999999999987
Q ss_pred eCCCcEEEEEccCCCeEEEEEc-cccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCC
Q psy307 412 SMDCRVKLWEVYKEHRCVRTYY-GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDED 490 (1019)
Q Consensus 412 s~Dg~I~IWDl~~~~~~~~~l~-~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~ 490 (1019)
.++.+.+|+.. .. ..+. .|...|.+++|||+|.+|++++.||+|++||..+ ++..+. +..
T Consensus 65 -~~~~~~~~~~~-~~---~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~----------- 125 (588)
T 2j04_A 65 -FENKLDFELAQ-QN---GLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKG----------- 125 (588)
T ss_dssp -CCCTTTTSCCC-SS---CSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSS-----------
T ss_pred -CcceEEEEeCC-Cc---eEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCC-----------
Confidence 35555555541 11 1222 5688899999999999999999999999999543 333332 110
Q ss_pred eeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccc----cceeEE----eccccccceEEEE
Q psy307 491 KQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKL----NRKKTF----EGHMVAGYACSLD 562 (1019)
Q Consensus 491 ~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~----~~~~~l----~gh~~~~~V~~v~ 562 (1019)
......+.+++|||+|++|++|+.||+|++||+.++... ..+.++ .+|. ..|.+++
T Consensus 126 --------------~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~--~~V~sVa 189 (588)
T 2j04_A 126 --------------NLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSK--DWVTHIV 189 (588)
T ss_dssp --------------CSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCC--CCEEEEE
T ss_pred --------------ccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccccc--ccEEEEE
Confidence 001135778999999999999999999999999876321 124565 4554 6899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCce---eeeee-ccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeecc
Q psy307 563 FSPDMSYLISGDADGKCYIWDWKTTKL---FKKWK-AHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEME 638 (1019)
Q Consensus 563 fspdg~~Lasgs~DG~I~IWDl~t~~~---l~~l~-~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~ 638 (1019)
|+||| +++++.|++|++||+.+++. .++++ +|...|.+++|+ + ..+++++ +|+|++| +..-.+......
T Consensus 190 wSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLW-d~~~~~~~~~~~ 262 (588)
T 2j04_A 190 WYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKI-DLKNYSISSLKT 262 (588)
T ss_dssp EETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEE-ETTTTEEEEEEC
T ss_pred EcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C-CEEEEEe-CCeEEEE-ECCCCeEEEEEc
Confidence 99999 88889999999999988774 35674 788899999999 4 5888887 6888665 444333322211
Q ss_pred ccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCC
Q psy307 639 KQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSD 718 (1019)
Q Consensus 639 ~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d 718 (1019)
++...+.. +.+. .-+++...+..+.++. .+|... .++++|++ +.+++ .|
T Consensus 263 gh~~~V~~----va~~----------~s~d~~~La~a~edG~--klw~~d-----------~~~~spd~--~l~a~--~d 311 (588)
T 2j04_A 263 GSLENFHI----IPLN----------HEKESTILLMSNKTSY--KVLLED-----------ELHVTADN--IIAPY--LE 311 (588)
T ss_dssp SCCSCCCE----EEET----------TCSSCEEEEECSSCEE--EEEESS-----------SEEEECCC--SSHHH--HH
T ss_pred CCCceEEE----EEee----------eCCCCCEEEEEcCCCC--EEEeec-----------cEEECCCc--eEEEE--cC
Confidence 22222111 1110 0012222333333332 344422 27799999 33333 49
Q ss_pred CchhhHHHHHHh
Q psy307 719 KNASLEEKTAAE 730 (1019)
Q Consensus 719 ~~i~lw~~~~~e 730 (1019)
+++++|++-..+
T Consensus 312 ~~v~lW~~~g~~ 323 (588)
T 2j04_A 312 KKFKKWSTIWNE 323 (588)
T ss_dssp HHHHHTTTTTTS
T ss_pred CEEEEEECCCCc
Confidence 999999964444
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.6e-24 Score=249.42 Aligned_cols=242 Identities=13% Similarity=0.117 Sum_probs=186.0
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcE--EEEEecccC----------------------------------
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERR--CVRTYYGHR---------------------------------- 379 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~--~~~~~~gh~---------------------------------- 379 (1019)
.++.+++|+|+ |.+|+++ .++.|++||+.++.. .+..+..+.
T Consensus 5 ~p~~~v~~s~d-g~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSRD-GSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECSS-SSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecCC-CCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 47899999997 5655554 588999999854431 445554332
Q ss_pred --------------------ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccC-CCeEEEEEc--ccc
Q psy307 380 --------------------QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-EHRCVRTYY--GHR 436 (1019)
Q Consensus 380 --------------------~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~-~~~~~~~l~--~H~ 436 (1019)
..|.+++|+|++ ..++++|+.||.|++||+.. .+.++..+. .|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-------------~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 149 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDE-------------SRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFS 149 (450)
T ss_dssp -----------------CCCCCEEEEEECTTS-------------SEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCC-------------CEEEEEECCCCeEEEEECcCCCCceeeeeecccCC
Confidence 245555555555 34469999999999999952 556666665 567
Q ss_pred ccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEE
Q psy307 437 QAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTS 516 (1019)
Q Consensus 437 ~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~ 516 (1019)
..|.+++|+|++++|++++.||.|++|++.++..... .......+...|.+++|
T Consensus 150 ~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~--------------------------~~~~~~~h~~~v~~~~~ 203 (450)
T 2vdu_B 150 KRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKF--------------------------TQEPILGHVSMLTDVHL 203 (450)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSC--------------------------CCCCSEECSSCEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccc--------------------------cceeeecccCceEEEEE
Confidence 8999999999999999999999999999987653210 00011124456788889
Q ss_pred cCC---CCEEEEEecCCeEEEEEccCcccccceeE-EeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee
Q psy307 517 SPN---NKWLACQSMDNKILIFSALNRFKLNRKKT-FEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKK 592 (1019)
Q Consensus 517 spd---g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~-l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~ 592 (1019)
+|+ +++|++++.|+.|++||+.++. .... +.+|. +.|.+++|+ +|++|++|+.||+|+|||+.+++++..
T Consensus 204 sp~~~~~~~l~s~~~d~~i~vwd~~~~~---~~~~~~~~h~--~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~ 277 (450)
T 2vdu_B 204 IKDSDGHQFIITSDRDEHIKISHYPQCF---IVDKWLFGHK--HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLST 277 (450)
T ss_dssp EECTTSCEEEEEEETTSCEEEEEESCTT---CEEEECCCCS--SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEE
T ss_pred cCCCCCCcEEEEEcCCCcEEEEECCCCc---eeeeeecCCC--CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeee
Confidence 999 9999999999999999998763 3344 45776 779999999 999999999999999999999999888
Q ss_pred eecc-------------------------CCCEEEEEEcCCCCcEEEEEe-CCCcEEEE
Q psy307 593 WKAH-------------------------DGVCISTLWHPHEPSKVVTAG-WDAATAKV 625 (1019)
Q Consensus 593 l~~h-------------------------~~~V~sl~~sp~~~~~l~s~s-~Dg~I~iw 625 (1019)
+..+ ...|.+++|+|++ .++++++ .|+.|++|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw 335 (450)
T 2vdu_B 278 FDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIIL 335 (450)
T ss_dssp EECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS-SEEEEEETTCSEEEEE
T ss_pred ecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEE
Confidence 8633 3578999999988 5777777 89999776
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-23 Score=235.64 Aligned_cols=288 Identities=14% Similarity=0.150 Sum_probs=210.9
Q ss_pred CCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccC-CCeEEEEEccccccEeEEEEe
Q psy307 367 KERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-EHRCVRTYYGHRQAVRDICFN 445 (1019)
Q Consensus 367 ~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~-~~~~~~~l~~H~~~V~sl~fs 445 (1019)
...+.+..+.+|...|++++|+|++. ++.+|++|+.||.|++||+.. .......+.+|...|.+++|+
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~-----------~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~ 95 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTL-----------PGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWS 95 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTS-----------SSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEEC
T ss_pred CCcceeEeccCCCCceEEEEEcCCCC-----------CceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEEC
Confidence 34456778899999999999999830 016999999999999999976 444448899999999999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEE--ecCCCeeeeccCCCceeeeCCCCCc--------ccEEE
Q psy307 446 NTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKF--HPDEDKQHLDIPVDMKYIADPTMHS--------MPAVT 515 (1019)
Q Consensus 446 pdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~--~p~~~~~~~~~~~~~~~i~~~~~~~--------i~~v~ 515 (1019)
|++++|++++.||.|++||+++++++....+...+.++.| +|++..++.........+++..... -...+
T Consensus 96 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 175 (368)
T 3mmy_A 96 DDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYC 175 (368)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEE
T ss_pred cCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceE
Confidence 9999999999999999999999999888888888999999 6666544443322223333221111 12333
Q ss_pred EcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCE----EEEEeCCCeEEEEeCCCC---c
Q psy307 516 SSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSY----LISGDADGKCYIWDWKTT---K 588 (1019)
Q Consensus 516 ~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~----Lasgs~DG~I~IWDl~t~---~ 588 (1019)
+.+.+..+++++.++.+.+|++...... ..... ......+.++++.+++.. +++|+.||.|++||+... .
T Consensus 176 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~ 252 (368)
T 3mmy_A 176 ADVIYPMAVVATAERGLIVYQLENQPSE--FRRIE-SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK 252 (368)
T ss_dssp EEEETTEEEEEEGGGCEEEEECSSSCEE--EEECC-CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHH
T ss_pred EEecCCeeEEEeCCCcEEEEEeccccch--hhhcc-ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccc
Confidence 4444567888888999999998764221 11111 111233556666655544 999999999999999987 5
Q ss_pred eeeeeeccCC------------CEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchh
Q psy307 589 LFKKWKAHDG------------VCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSI 656 (1019)
Q Consensus 589 ~l~~l~~h~~------------~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~ 656 (1019)
.+..+.+|.. .|.+++|+|++ .+|++++.||.|++| +....+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iw-d~~~~~------------------------ 306 (368)
T 3mmy_A 253 DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFW-DKDART------------------------ 306 (368)
T ss_dssp HSEEEECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEE-ETTTTE------------------------
T ss_pred cceeeeeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEE-ECCCCc------------------------
Confidence 6778888876 79999999998 689999999999776 321100
Q ss_pred hhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCchhhHHH
Q psy307 657 IQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNASLEEK 726 (1019)
Q Consensus 657 ~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~~ 726 (1019)
....+ ..|.++|.+++|+|++ +.|++++.|+..+.|+.
T Consensus 307 ---------------~~~~~---------------~~~~~~v~~~~~s~~g--~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 307 ---------------KLKTS---------------EQLDQPISACCFNHNG--NIFAYASSYDWSKGHEF 344 (368)
T ss_dssp ---------------EEEEC---------------CCCSSCEEEEEECTTS--SCEEEEECCCSTTCGGG
T ss_pred ---------------EEEEe---------------cCCCCCceEEEECCCC--CeEEEEecccccccccc
Confidence 01111 1356789999999999 88999999988776663
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-23 Score=234.76 Aligned_cols=238 Identities=11% Similarity=0.079 Sum_probs=171.3
Q ss_pred EEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeE
Q psy307 362 LWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRD 441 (1019)
Q Consensus 362 IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~s 441 (1019)
||++ ..+.++..+.+|...|.+++|+|+| .+|++|+.+| ++||++. ........ +...+..
T Consensus 3 i~s~-~~~~~~~~~~~h~~~V~~v~fs~dg--------------~~la~g~~~~-~~iw~~~-~~~~~~~~--~~~~~~~ 63 (355)
T 3vu4_A 3 LGSM-ITRNPIVPENHVSNPVTDYEFNQDQ--------------SCLILSTLKS-FEIYNVH-PVAHIMSQ--EMRHLSK 63 (355)
T ss_dssp -----------------CCCCCEEEECTTS--------------SEEEEECSSE-EEEEEET-TEEEEEEE--ECSCCCE
T ss_pred cccc-cccCCccccccCCCceEEEEECCCC--------------CEEEEEcCCE-EEEEecC-Ccceeeee--ecCCeEE
Confidence 4554 3445666778999999999999999 6888888775 7899984 33433332 2235788
Q ss_pred EEEecCCCEE-EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCC---------cc
Q psy307 442 ICFNNTGTNF-ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMH---------SM 511 (1019)
Q Consensus 442 l~fspdg~~l-~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~---------~i 511 (1019)
+++.++++.+ ++++.|++|++||+.+++++..+.....+.++.++++......+ ....+.+.... ..
T Consensus 64 ~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~~~ 140 (355)
T 3vu4_A 64 VRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYG---DVISVFKFGNPWKRITDDIRFG 140 (355)
T ss_dssp EEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEET---TEEEEEESSTTCCBSSCCEEEE
T ss_pred EEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEc---CEEEEEECCCCceeeEEeccCC
Confidence 8999988887 56778899999999999999999988899999998864322211 11111111111 23
Q ss_pred cEEEEcCCCCEEEE--EecCCeEEEEEccCcccc------------cc-eeEEeccccccceEEEEEcCCCCEEEEEeCC
Q psy307 512 PAVTSSPNNKWLAC--QSMDNKILIFSALNRFKL------------NR-KKTFEGHMVAGYACSLDFSPDMSYLISGDAD 576 (1019)
Q Consensus 512 ~~v~~spdg~~Las--gs~Dg~I~iwd~~~~~~~------------~~-~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D 576 (1019)
..+++++ .++++ |+.||.|++||+.++... .. ...+.+|. +.|.+++|+|+|++|++|+.|
T Consensus 141 ~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~--~~v~~~~~s~~g~~l~s~s~d 216 (355)
T 3vu4_A 141 GVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT--NPIKMVRLNRKSDMVATCSQD 216 (355)
T ss_dssp EEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCS--SCEEEEEECTTSSEEEEEETT
T ss_pred ceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccC--CceEEEEECCCCCEEEEEeCC
Confidence 3466677 56666 588999999999865310 11 56788887 779999999999999999999
Q ss_pred Ce-EEEEeCCCCceeeeee-c-cCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 577 GK-CYIWDWKTTKLFKKWK-A-HDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 577 G~-I~IWDl~t~~~l~~l~-~-h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
|+ |+|||+.+++.+..+. + |.+.|.+++|+|++ .+|++++.||+|++|.
T Consensus 217 ~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 217 GTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFE 268 (355)
T ss_dssp CSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEE
T ss_pred CCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEE
Confidence 98 9999999999999998 5 99999999999998 6999999999997763
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-22 Score=227.28 Aligned_cols=244 Identities=11% Similarity=-0.002 Sum_probs=191.2
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC--eEEEEEccccccEeEEEEecCCC-
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH--RCVRTYYGHRQAVRDICFNNTGT- 449 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~--~~~~~l~~H~~~V~sl~fspdg~- 449 (1019)
....+|...|.+++|+|++ .+|++|+.||.|++||+.... .....+.+|...|.+++|+|+++
T Consensus 5 ~~~~~h~~~v~~~~~s~~~--------------~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 70 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSK--------------SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL 70 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGG--------------TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE
T ss_pred ecccCCCCcEEEEEEcCCC--------------CEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc
Confidence 3456899999999999988 689999999999999996554 23455669999999999999999
Q ss_pred EEEEEEcCCeEEEEEC-CCCceEEEEe--cCCceEEEEEecCCCeeeeccCCCcee-------------------eeCCC
Q psy307 450 NFISAGYDRYLKLWDT-ESGECISRFT--SRKVAYCVKFHPDEDKQHLDIPVDMKY-------------------IADPT 507 (1019)
Q Consensus 450 ~l~S~s~Dg~I~lWDl-~t~~~i~~~~--~~~~v~~v~~~p~~~~~~~~~~~~~~~-------------------i~~~~ 507 (1019)
+|++++.||.|++||+ .+++...... +...+.+++|+| +...+......... ....+
T Consensus 71 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 149 (342)
T 1yfq_A 71 QIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKV 149 (342)
T ss_dssp EEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSS
T ss_pred EEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEee
Confidence 9999999999999999 8887644334 567899999999 55444321111111 11125
Q ss_pred CCcccEEEEcCCCCEEEEEecCCeEEEEEccC-cccccceeEEeccccccceEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q psy307 508 MHSMPAVTSSPNNKWLACQSMDNKILIFSALN-RFKLNRKKTFEGHMVAGYACSLDFSP-DMSYLISGDADGKCYIWDWK 585 (1019)
Q Consensus 508 ~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~-~~~~~~~~~l~gh~~~~~V~~v~fsp-dg~~Lasgs~DG~I~IWDl~ 585 (1019)
...+.+++++|++ +++++.|+.|++||+.+ .... .......|. ..+.+++|+| +++++++|+.||.|++|++.
T Consensus 150 ~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~--~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~ 224 (342)
T 1yfq_A 150 KNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN-GTIEESGLK--YQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224 (342)
T ss_dssp CCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCC-CEEEECSCS--SCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred CCceEEEEecCCc--EEEEeCCCeEEEEECCcccccc-ceeeecCCC--CceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence 5678899999887 99999999999999987 4321 222333444 6799999999 99999999999999999998
Q ss_pred CC------ceeeeeeccCC---------CEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeecc
Q psy307 586 TT------KLFKKWKAHDG---------VCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEME 638 (1019)
Q Consensus 586 t~------~~l~~l~~h~~---------~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~ 638 (1019)
.. +....+..|.. .|.+++|+|++ .+|++++.||.|++| +....+......
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vw-d~~~~~~~~~~~ 290 (342)
T 1yfq_A 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCW-NLQTRKKIKNFA 290 (342)
T ss_dssp TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEE-ETTTTEEEEECC
T ss_pred CCCcccccccceeeecccccccccccceeEEEEEEcCCC-CEEEEecCCceEEEE-cCccHhHhhhhh
Confidence 87 78888888865 99999999998 689999999999665 555444443333
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.8e-23 Score=225.66 Aligned_cols=245 Identities=13% Similarity=0.138 Sum_probs=177.9
Q ss_pred eeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCC------------------------C----CcEE
Q psy307 300 SFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPK------------------------S----AHLL 351 (1019)
Q Consensus 300 ~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd------------------------~----g~lL 351 (1019)
.++++. ...|+||+..... .-+.+++|++|+.+|..|.+.|| + +..+
T Consensus 56 ~~~~~~-~~~v~lw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l 130 (356)
T 2w18_A 56 CIITAC-EDVVSLWKALDAW----QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVL 130 (356)
T ss_dssp EEEEEE-SSEEEEEEESSSS----BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEE
T ss_pred EEEEec-cceEEEcccCCCc----cceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEE
Confidence 445554 4689999876432 22578899999876666555551 3 4566
Q ss_pred EEeeCCCeEEEEecCCCcEEEEE-ecccCccEeEEEEcCCCCceeE---------EEeecC--CCCcEEEEEeCCCcEEE
Q psy307 352 LSCSMDCRVKLWEVYKERRCVRT-YYGHRQAVRDICFNNTGTNFIS---------AIRWFP--KSAHLLLSCSMDCRVKL 419 (1019)
Q Consensus 352 aSgs~Dg~I~IWdl~~~~~~~~~-~~gh~~~V~~i~fspdg~~~vs---------~i~~~p--~~~~~L~sgs~Dg~I~I 419 (1019)
++++. .+++|++ .+++.+.+ ..+|.+.|..++++|+|....+ .++|++ .++.+|++|+.|++|+|
T Consensus 131 ~s~g~--~~~v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkI 207 (356)
T 2w18_A 131 LKSGN--IKAVLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVI 207 (356)
T ss_dssp EEEEE--EEEEEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEE
T ss_pred EeCCC--eEEEEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEE
Confidence 76663 4888998 45666666 6789999999999999875432 345555 56789999999999999
Q ss_pred EEccCCCeEEEEEcccc---ccEeEEEEecCCCEE------------EEEEcCCeEEEEECCCCceEEEEecCCceEEEE
Q psy307 420 WEVYKEHRCVRTYYGHR---QAVRDICFNNTGTNF------------ISAGYDRYLKLWDTESGECISRFTSRKVAYCVK 484 (1019)
Q Consensus 420 WDl~~~~~~~~~l~~H~---~~V~sl~fspdg~~l------------~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~ 484 (1019)
||+ .+++++.++.+|. ..+.+++|+|+|.++ ++|+.|++|++||..+++++..+. +.
T Consensus 208 WDl-~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~-------~~ 279 (356)
T 2w18_A 208 WNL-KTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVML-------YC 279 (356)
T ss_dssp EET-TTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEE-------EC
T ss_pred EEC-CCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEE-------ee
Confidence 999 6678888887654 467788999999876 568899999999999998876442 11
Q ss_pred EecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEc
Q psy307 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564 (1019)
Q Consensus 485 ~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fs 564 (1019)
+ |++. ....+..+.++.++++++.|++|+|||+.++ ..+.++.+|.. ..+.+++||
T Consensus 280 ~-p~Gh-------------------~~~~lsg~~sg~~lASgS~DgTIkIWDl~tG---k~l~tL~gH~~-~vvs~vafS 335 (356)
T 2w18_A 280 L-PPGQ-------------------AGRFLEGDVKDHCAAAILTSGTIAIWDLLLG---QCTALLPPVSD-QHWSFVKWS 335 (356)
T ss_dssp C-CTTC-------------------CCCEEEEEEETTEEEEEETTSCEEEEETTTC---SEEEEECCC---CCCCEEEEC
T ss_pred c-cCCC-------------------cceeEccccCCCEEEEEcCCCcEEEEECCCC---cEEEEecCCCC-CeEEEEEEC
Confidence 1 2221 1112233344789999999999999999988 45678888862 224468999
Q ss_pred CCCCEEEEEeCCCeEEEEeC
Q psy307 565 PDMSYLISGDADGKCYIWDW 584 (1019)
Q Consensus 565 pdg~~Lasgs~DG~I~IWDl 584 (1019)
|||++|++|+.|++|+|||+
T Consensus 336 PDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 336 GTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SSSSEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEEECCCcEEEecC
Confidence 99999999999999999995
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-21 Score=228.37 Aligned_cols=268 Identities=13% Similarity=0.116 Sum_probs=207.2
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVR 373 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~ 373 (1019)
+++.++.++++..|+.|.+|+....... .......+.+|.+.|.+++|+|+ +.++++++.|+.|++||+ ..++++.
T Consensus 130 ~s~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~v~~~d~-~~~~~~~ 205 (433)
T 3bws_A 130 FIDNTRLAIPLLEDEGMDVLDINSGQTV--RLSPPEKYKKKLGFVETISIPEH-NELWVSQMQANAVHVFDL-KTLAYKA 205 (433)
T ss_dssp ESSSSEEEEEBTTSSSEEEEETTTCCEE--EECCCHHHHTTCCEEEEEEEGGG-TEEEEEEGGGTEEEEEET-TTCCEEE
T ss_pred EeCCCeEEEEeCCCCeEEEEECCCCeEe--eecCcccccccCCceeEEEEcCC-CEEEEEECCCCEEEEEEC-CCceEEE
Confidence 4557788888888999999987643210 00111156799999999999885 889999999999999999 4556778
Q ss_pred EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE
Q psy307 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS 453 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S 453 (1019)
.+..|...+.+++|+|++. .++++++.|+.|++||+ ..++.+..+..+ ..+.+++|+|+++.+++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~-------------~l~~~~~~~~~i~~~d~-~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~ 270 (433)
T 3bws_A 206 TVDLTGKWSKILLYDPIRD-------------LVYCSNWISEDISVIDR-KTKLEIRKTDKI-GLPRGLLLSKDGKELYI 270 (433)
T ss_dssp EEECSSSSEEEEEEETTTT-------------EEEEEETTTTEEEEEET-TTTEEEEECCCC-SEEEEEEECTTSSEEEE
T ss_pred EEcCCCCCeeEEEEcCCCC-------------EEEEEecCCCcEEEEEC-CCCcEEEEecCC-CCceEEEEcCCCCEEEE
Confidence 8888999999999999883 34456668999999999 456666666654 45999999999999998
Q ss_pred EE--------cCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeec-cCCCceee----------eCCCCCcccEE
Q psy307 454 AG--------YDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLD-IPVDMKYI----------ADPTMHSMPAV 514 (1019)
Q Consensus 454 ~s--------~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~-~~~~~~~i----------~~~~~~~i~~v 514 (1019)
++ .|+.|++||+.+++.+..+.....+.+++|+|++....+. .......+ ...+...+.++
T Consensus 271 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~ 350 (433)
T 3bws_A 271 AQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTI 350 (433)
T ss_dssp EEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEE
T ss_pred EECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeE
Confidence 88 4889999999999988888766788899999998755442 11111111 11234567899
Q ss_pred EEcCCCCEEEEEec---------------CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC-CCe
Q psy307 515 TSSPNNKWLACQSM---------------DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA-DGK 578 (1019)
Q Consensus 515 ~~spdg~~Lasgs~---------------Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~-DG~ 578 (1019)
+|+|+|+++++++. ||.|++||+.++. ....+.++ ..+.+++|+|+|++|++++. ||.
T Consensus 351 ~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~---~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~d~~ 424 (433)
T 3bws_A 351 ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT---VKEFWEAG---NQPTGLDVSPDNRYLVISDFLDHQ 424 (433)
T ss_dssp EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE---EEEEEECS---SSEEEEEECTTSCEEEEEETTTTE
T ss_pred EEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc---EEEEecCC---CCCceEEEcCCCCEEEEEECCCCe
Confidence 99999999988876 5799999998763 33455443 56899999999999988875 999
Q ss_pred EEEEeCCC
Q psy307 579 CYIWDWKT 586 (1019)
Q Consensus 579 I~IWDl~t 586 (1019)
|++|++..
T Consensus 425 i~v~~~~~ 432 (433)
T 3bws_A 425 IRVYRRDG 432 (433)
T ss_dssp EEEEEETT
T ss_pred EEEEEecC
Confidence 99999763
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=8.9e-21 Score=217.26 Aligned_cols=245 Identities=9% Similarity=0.091 Sum_probs=191.8
Q ss_pred CCCCCCCee-eeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE
Q psy307 293 PTDYQGRSF-LHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC 371 (1019)
Q Consensus 293 ~~~~~gr~~-~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~ 371 (1019)
.++++|+.+ +++..|+.|++|+... .+.+..+..|. .|.+++|+|++..++++++.|+.|++||+ ..++.
T Consensus 38 ~~s~dg~~l~~~~~~d~~i~v~d~~~-------~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~-~~~~~ 108 (391)
T 1l0q_A 38 VISPDGTKVYVANAHSNDVSIIDTAT-------NNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDT-TSNTV 108 (391)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEETTT-------TEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEET-TTTEE
T ss_pred EECCCCCEEEEECCCCCeEEEEECCC-------CeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEEC-CCCeE
Confidence 467788876 6777899999998753 34566777666 99999999975555567778899999999 45566
Q ss_pred EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEE
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNF 451 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l 451 (1019)
+..+..| ..+.+++|+|++. .++++++.|+.|++||+ ..++.+..+..| ..+.+++|+|+++.+
T Consensus 109 ~~~~~~~-~~~~~~~~s~dg~-------------~l~~~~~~~~~v~~~d~-~~~~~~~~~~~~-~~~~~~~~~~dg~~l 172 (391)
T 1l0q_A 109 AGTVKTG-KSPLGLALSPDGK-------------KLYVTNNGDKTVSVINT-VTKAVINTVSVG-RSPKGIAVTPDGTKV 172 (391)
T ss_dssp EEEEECS-SSEEEEEECTTSS-------------EEEEEETTTTEEEEEET-TTTEEEEEEECC-SSEEEEEECTTSSEE
T ss_pred EEEEeCC-CCcceEEECCCCC-------------EEEEEeCCCCEEEEEEC-CCCcEEEEEecC-CCcceEEECCCCCEE
Confidence 6666654 4678899988883 34478888999999999 556777777665 456899999999987
Q ss_pred -EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEe---
Q psy307 452 -ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQS--- 527 (1019)
Q Consensus 452 -~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs--- 527 (1019)
++++.|+.|++||+++++++..+..... +.+++++|+|++|++++
T Consensus 173 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~g~~l~~~~~~~ 221 (391)
T 1l0q_A 173 YVANFDSMSISVIDTVTNSVIDTVKVEAA-------------------------------PSGIAVNPEGTKAYVTNVDK 221 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSSE-------------------------------EEEEEECTTSSEEEEEEECS
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEecCCC-------------------------------ccceEECCCCCEEEEEecCc
Confidence 5677889999999999987766654333 34566778888888887
Q ss_pred cCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCceeeeeeccCCC
Q psy307 528 MDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYL-ISGDADGKCYIWDWKTTKLFKKWKAHDGV 599 (1019)
Q Consensus 528 ~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~L-asgs~DG~I~IWDl~t~~~l~~l~~h~~~ 599 (1019)
.++.|++||+.++. ....+..+ ..+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..|..+
T Consensus 222 ~~~~v~~~d~~~~~---~~~~~~~~---~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 222 YFNTVSMIDTGTNK---ITARIPVG---PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP 288 (391)
T ss_dssp SCCEEEEEETTTTE---EEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred CCCcEEEEECCCCe---EEEEEecC---CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence 68999999998763 34555555 347889999999987 67788999999999999999988877654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.3e-21 Score=221.86 Aligned_cols=268 Identities=11% Similarity=0.079 Sum_probs=202.5
Q ss_pred ceeeecC--CCCCCccCCccce--eeeccCCCCeEEEEEcCC-------------CCcEEEEeeCC------CeEEEEec
Q psy307 309 GTNLRSD--TPPDRCFLPKTQV--HTWEGHTKGISAIRWFPK-------------SAHLLLSCSMD------CRVKLWEV 365 (1019)
Q Consensus 309 ~v~lw~~--~~~~~~~lp~~~i--~~l~gH~~~V~~i~fspd-------------~g~lLaSgs~D------g~I~IWdl 365 (1019)
.++||+. ... +++ .++.+|...+..+++++. .+..++.++.+ +.|++||+
T Consensus 94 ~i~lwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~ 166 (415)
T 2hqs_A 94 AYQLVDTGGAPG-------TVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDY 166 (415)
T ss_dssp EEEEEECSSSTT-------CEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEET
T ss_pred EEEEEeCCCCCC-------CEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcC
Confidence 8999987 422 334 568999999988887751 03445555443 79999998
Q ss_pred CCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC---cEEEEEccCCCeEEEEEccccccEeEE
Q psy307 366 YKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC---RVKLWEVYKEHRCVRTYYGHRQAVRDI 442 (1019)
Q Consensus 366 ~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg---~I~IWDl~~~~~~~~~l~~H~~~V~sl 442 (1019)
.. ...+.+.+|...|.+++|+|+| +.|++++.++ .|++||+.. ++. ..+..|...+.++
T Consensus 167 ~g--~~~~~l~~~~~~v~~~~~Spdg--------------~~la~~s~~~~~~~i~~~d~~t-g~~-~~l~~~~~~~~~~ 228 (415)
T 2hqs_A 167 DG--YNQFVVHRSPQPLMSPAWSPDG--------------SKLAYVTFESGRSALVIQTLAN-GAV-RQVASFPRHNGAP 228 (415)
T ss_dssp TS--CSCEEEEEESSCEEEEEECTTS--------------SEEEEEECTTSSCEEEEEETTT-CCE-EEEECCSSCEEEE
T ss_pred CC--CCCEEEeCCCCcceeeEEcCCC--------------CEEEEEEecCCCcEEEEEECCC-CcE-EEeecCCCcccCE
Confidence 43 4467788899999999999999 6888888875 999999954 444 3567788899999
Q ss_pred EEecCCCEEE-EEEcCCe--EEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCC---cee----------eeCC
Q psy307 443 CFNNTGTNFI-SAGYDRY--LKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVD---MKY----------IADP 506 (1019)
Q Consensus 443 ~fspdg~~l~-S~s~Dg~--I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~---~~~----------i~~~ 506 (1019)
+|+|+|++|+ +++.|+. |.+||+.++++.........+.+++|+|++..+++..... ..+ ....
T Consensus 229 ~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~ 308 (415)
T 2hqs_A 229 AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW 308 (415)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC
T ss_pred EEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEec
Confidence 9999999887 6666654 9999999988754444556788999999998766533211 111 1122
Q ss_pred CCCcccEEEEcCCCCEEEEEecC---CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC---eEE
Q psy307 507 TMHSMPAVTSSPNNKWLACQSMD---NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG---KCY 580 (1019)
Q Consensus 507 ~~~~i~~v~~spdg~~Lasgs~D---g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG---~I~ 580 (1019)
+...+..++|+|+|++|++++.+ +.|.+||+.++.. ..+..+ ..+.+++|+|||++|++++.++ .|+
T Consensus 309 ~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~----~~l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l~ 381 (415)
T 2hqs_A 309 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----QVLSST---FLDETPSLAPNGTMVIYSSSQGMGSVLN 381 (415)
T ss_dssp SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE----EECCCS---SSCEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE----EEecCC---CCcCCeEEcCCCCEEEEEEcCCCccEEE
Confidence 34456789999999999988865 5899999987632 234444 2588999999999999988877 799
Q ss_pred EEeCCCCceeeeeeccCCCEEEEEEcCCC
Q psy307 581 IWDWKTTKLFKKWKAHDGVCISTLWHPHE 609 (1019)
Q Consensus 581 IWDl~t~~~l~~l~~h~~~V~sl~~sp~~ 609 (1019)
+||+. +.....+..|.+.|.+++|+|..
T Consensus 382 ~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 382 LVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred EEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 99986 56677889999999999999964
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5e-20 Score=221.60 Aligned_cols=317 Identities=10% Similarity=0.049 Sum_probs=229.6
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecC-CCcEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVY-KERRC 371 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~-~~~~~ 371 (1019)
.++++|+.+++...|+.|.+|+.. ..+++.++..+.. +.+++|+|+ +++|++++.|++|.+||+. ...++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~-------t~~~~~~i~~g~~-~~~v~~spd-g~~l~v~~~d~~V~v~D~~~~t~~~ 214 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGD-------SKKIVKVIDTGYA-VHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTK 214 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETT-------TCCEEEEEECSTT-EEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECC-------CceEEEEEecCcc-cceEEECCC-CCEEEEECCCCeEEEEECcCCCCcE
Confidence 367788999999999999999765 3456778873333 999999996 8899999999999999993 34567
Q ss_pred EEEecccCccEeEEEEcC----CCCceeEEEeecCCCCcEEEEEe-CCCcEEEEEccCCCeEEEEEcc----------cc
Q psy307 372 VRTYYGHRQAVRDICFNN----TGTNFISAIRWFPKSAHLLLSCS-MDCRVKLWEVYKEHRCVRTYYG----------HR 436 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fsp----dg~~~vs~i~~~p~~~~~L~sgs-~Dg~I~IWDl~~~~~~~~~l~~----------H~ 436 (1019)
+.++.. ...+..++|+| +| ++|++++ .+++|.+||. .+.+++..+.. |.
T Consensus 215 ~~~i~~-g~~p~~va~sp~~~~dg--------------~~l~v~~~~~~~v~v~D~-~t~~~~~~i~~~g~~~~~~~~~~ 278 (543)
T 1nir_A 215 VAEIKI-GIEARSVESSKFKGYED--------------RYTIAGAYWPPQFAIMDG-ETLEPKQIVSTRGMTVDTQTYHP 278 (543)
T ss_dssp EEEEEC-CSEEEEEEECCSTTCTT--------------TEEEEEEEESSEEEEEET-TTCCEEEEEECCEECSSSCCEES
T ss_pred EEEEec-CCCcceEEeCCCcCCCC--------------CEEEEEEccCCeEEEEec-cccccceeecccCcccCcccccc
Confidence 777764 45679999999 88 5777776 5899999998 56666666654 33
Q ss_pred c-cEeEEEEecCCCE-EEEEEcCCeEEEEECCCCceEE--EEecCCceEEEEEecCCCeeeeccC-CCc---------ee
Q psy307 437 Q-AVRDICFNNTGTN-FISAGYDRYLKLWDTESGECIS--RFTSRKVAYCVKFHPDEDKQHLDIP-VDM---------KY 502 (1019)
Q Consensus 437 ~-~V~sl~fspdg~~-l~S~s~Dg~I~lWDl~t~~~i~--~~~~~~~v~~v~~~p~~~~~~~~~~-~~~---------~~ 502 (1019)
. .+.++.++|++.. +++...+++|.+||+.+++.+. .+.....+..+.|+|++....+... ... +.
T Consensus 279 ~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l 358 (543)
T 1nir_A 279 EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL 358 (543)
T ss_dssp CCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred CCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE
Confidence 3 7899999998776 5566678999999998876544 5666677889999999986544111 111 11
Q ss_pred ---eeC---CCCCcccEEEEcCC-CCEEEEEe-cCCeEEEEEccCccc----ccceeEEeccccccceEEEEEcCCCCEE
Q psy307 503 ---IAD---PTMHSMPAVTSSPN-NKWLACQS-MDNKILIFSALNRFK----LNRKKTFEGHMVAGYACSLDFSPDMSYL 570 (1019)
Q Consensus 503 ---i~~---~~~~~i~~v~~spd-g~~Lasgs-~Dg~I~iwd~~~~~~----~~~~~~l~gh~~~~~V~~v~fspdg~~L 570 (1019)
+.. +|......+ ++|+ +..+++++ .|++|.+||+.+... ...++++.+|. +.+..++++|||++|
T Consensus 359 ~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g--~~~~~v~~~pdg~~l 435 (543)
T 1nir_A 359 SALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG--GGSLFIKTHPKSSHL 435 (543)
T ss_dssp EEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC--SCCCCEECCTTCCEE
T ss_pred EEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC--CCceEEEcCCCCCcE
Confidence 111 122112222 4677 66666665 589999999987211 45678888876 456789999999999
Q ss_pred EEEe-------CCCeEEEEeCCCCcee-eee--------eccCCCEEEEEEcCCCCcEEEEEe----CCCcEEEEeccce
Q psy307 571 ISGD-------ADGKCYIWDWKTTKLF-KKW--------KAHDGVCISTLWHPHEPSKVVTAG----WDAATAKVQDANI 630 (1019)
Q Consensus 571 asgs-------~DG~I~IWDl~t~~~l-~~l--------~~h~~~V~sl~~sp~~~~~l~s~s----~Dg~I~iwwd~~i 630 (1019)
++++ .+++|.|||+.+++.. ..+ ..+...+..+.|+|+|...+++.. .|+.|.+ ||...
T Consensus 436 ~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v-~D~~t 514 (543)
T 1nir_A 436 YVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVV-VDDKT 514 (543)
T ss_dssp EECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEE-EETTT
T ss_pred EEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEE-EECCC
Confidence 9987 3679999999999876 443 345678999999999964444432 3788866 66666
Q ss_pred eeeeeecc
Q psy307 631 VKIAVEME 638 (1019)
Q Consensus 631 ~ki~~e~~ 638 (1019)
.+......
T Consensus 515 ~~~~~~i~ 522 (543)
T 1nir_A 515 LKLKAVVK 522 (543)
T ss_dssp TEEEEEEC
T ss_pred ceEEEeec
Confidence 66554433
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-20 Score=214.69 Aligned_cols=266 Identities=10% Similarity=0.043 Sum_probs=195.7
Q ss_pred CCeEEEEEcCCCCcEEEEee----CCC----eEEEEec--CCCcEEE-EEecccCccEeEEEEcCC--------CCceeE
Q psy307 336 KGISAIRWFPKSAHLLLSCS----MDC----RVKLWEV--YKERRCV-RTYYGHRQAVRDICFNNT--------GTNFIS 396 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs----~Dg----~I~IWdl--~~~~~~~-~~~~gh~~~V~~i~fspd--------g~~~vs 396 (1019)
..|....|++.+..++++|+ .|| .|+|||+ ....... ..+.+|...+..+++++. |..
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~--- 139 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK--- 139 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSC---
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCC---
Confidence 46777888888778888887 467 9999999 6654332 568889888888777641 100
Q ss_pred EEeecCCCCcEEEEEeCC------CcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCC---eEEEEECCC
Q psy307 397 AIRWFPKSAHLLLSCSMD------CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDR---YLKLWDTES 467 (1019)
Q Consensus 397 ~i~~~p~~~~~L~sgs~D------g~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg---~I~lWDl~t 467 (1019)
.+.+ ..++.++.+ +.|++||+. +.....+.+|...|.+++|+|+|++|++++.|+ .|++||+.+
T Consensus 140 ----~~~~-~~l~~~s~~~~~~~~~~i~i~d~~--g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t 212 (415)
T 2hqs_A 140 ----GAFR-TRIAYVVQTNGGQFPYELRVSDYD--GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN 212 (415)
T ss_dssp ----CCTT-CEEEEEEECSSSSCCEEEEEEETT--SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT
T ss_pred ----CcCC-CEEEEEEecCCCCccceEEEEcCC--CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC
Confidence 0011 344444443 799999984 344677788999999999999999999999885 999999999
Q ss_pred CceEEEEecCCceEEEEEecCCCeeeeccC-------------CCceeeeCCCCCcccEEEEcCCCCEEEEEecC-C--e
Q psy307 468 GECISRFTSRKVAYCVKFHPDEDKQHLDIP-------------VDMKYIADPTMHSMPAVTSSPNNKWLACQSMD-N--K 531 (1019)
Q Consensus 468 ~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~-------------~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D-g--~ 531 (1019)
+++.........+.+++|+|++..+++... .........+...+.+++|+|+|++|++++.+ + .
T Consensus 213 g~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~ 292 (415)
T 2hqs_A 213 GAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ 292 (415)
T ss_dssp CCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred CcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcE
Confidence 988765556678899999999987664211 11111222344567889999999999988864 4 6
Q ss_pred EEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeeeeccCCCEEEEEEcCC
Q psy307 532 ILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD---GKCYIWDWKTTKLFKKWKAHDGVCISTLWHPH 608 (1019)
Q Consensus 532 I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D---G~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~ 608 (1019)
|.+||+.++. ...+..+. ..+.+++|+|||++|++++.+ +.|++||+.+++.. .+..|. .+.+++|+|+
T Consensus 293 i~~~d~~~~~----~~~l~~~~--~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spd 364 (415)
T 2hqs_A 293 VYKVNINGGA----PQRITWEG--SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPN 364 (415)
T ss_dssp EEEEETTSSC----CEECCCSS--SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTT
T ss_pred EEEEECCCCC----EEEEecCC--CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCC
Confidence 8888887653 12333333 568899999999999988764 58999999998774 455554 7899999999
Q ss_pred CCcEEEEEeCCC
Q psy307 609 EPSKVVTAGWDA 620 (1019)
Q Consensus 609 ~~~~l~s~s~Dg 620 (1019)
+ ..|++++.|+
T Consensus 365 g-~~l~~~s~~~ 375 (415)
T 2hqs_A 365 G-TMVIYSSSQG 375 (415)
T ss_dssp S-SEEEEEEEET
T ss_pred C-CEEEEEEcCC
Confidence 8 5777777666
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-19 Score=195.37 Aligned_cols=257 Identities=12% Similarity=0.081 Sum_probs=184.9
Q ss_pred eCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEeccc-Ccc
Q psy307 303 HPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGH-RQA 381 (1019)
Q Consensus 303 ~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh-~~~ 381 (1019)
..+.|+.|.+|+.... ....+..|.+.|.+++|+|+ +.+|++++ ++.|.+||+...++......+| ...
T Consensus 17 ~~~~~~~i~~~d~~~~--------~~~~~~~~~~~v~~~~~spd-g~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~ 86 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR--------KMRVVWQTPELFEAPNWSPD-GKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATIC 86 (297)
T ss_dssp -CCCCEEEEEEETTTT--------EEEEEEEESSCCEEEEECTT-SSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCB
T ss_pred CCCcceeEEEEeCCCC--------ceeeeccCCcceEeeEECCC-CCEEEEEc-CCeEEEEeCCCCCCceEecccccccc
Confidence 3457889999986532 23456778999999999996 77888776 8899999995414555555555 467
Q ss_pred EeEEEEcCCCCceeEEEeecCCCCcEEEEEe--CCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEE-EEEcCC
Q psy307 382 VRDICFNNTGTNFISAIRWFPKSAHLLLSCS--MDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFI-SAGYDR 458 (1019)
Q Consensus 382 V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs--~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~-S~s~Dg 458 (1019)
|.+++|+|+| ++|++++ .++.+.||.+.........+..+. .+.+++|+|+++.|+ +++.|+
T Consensus 87 ~~~~~~spdg--------------~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~ 151 (297)
T 2ojh_A 87 NNDHGISPDG--------------ALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQ 151 (297)
T ss_dssp CSCCEECTTS--------------SEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETT
T ss_pred ccceEECCCC--------------CEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCC
Confidence 8899999998 5777777 445677776643333344444444 488999999999877 788899
Q ss_pred eEEEEECC--CCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEe-cCCeEEEE
Q psy307 459 YLKLWDTE--SGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQS-MDNKILIF 535 (1019)
Q Consensus 459 ~I~lWDl~--t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs-~Dg~I~iw 535 (1019)
.++||+++ ++... .+. .+...+.+++|+|+|++|++++ .++.+.+|
T Consensus 152 ~~~l~~~~~~~~~~~-~~~------------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~ 200 (297)
T 2ojh_A 152 VFDIYSMDIDSGVET-RLT------------------------------HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIW 200 (297)
T ss_dssp EEEEEEEETTTCCEE-ECC------------------------------CSSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred ceEEEEEECCCCcce-Ecc------------------------------cCCCccccceECCCCCEEEEEecCCCCccEE
Confidence 99999853 33321 111 1224566788899999888766 58999999
Q ss_pred EccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC-----------CeEEEEeCCCCce--eeeeeccCCCEEE
Q psy307 536 SALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD-----------GKCYIWDWKTTKL--FKKWKAHDGVCIS 602 (1019)
Q Consensus 536 d~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D-----------G~I~IWDl~t~~~--l~~l~~h~~~V~s 602 (1019)
++.... .....+..+. ..+.+++|+|+|++|++++.+ +.|++||+.+++. +..+.+|...+.+
T Consensus 201 ~~~~~~--~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 276 (297)
T 2ojh_A 201 RVRVDG--SSVERITDSA--YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNS 276 (297)
T ss_dssp EEETTS--SCEEECCCCS--EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCS
T ss_pred EECCCC--CCcEEEecCC--cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCccccc
Confidence 886221 2234455554 568899999999999888766 5699999998866 4445578889999
Q ss_pred EEEcCCCCcEEEEEeCCC
Q psy307 603 TLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 603 l~~sp~~~~~l~s~s~Dg 620 (1019)
++|+|++. .|++++.|.
T Consensus 277 ~~~spdg~-~l~~~~~~~ 293 (297)
T 2ojh_A 277 PNWSPDGD-EFAYVRYFP 293 (297)
T ss_dssp CCBCTTSS-EEEEEEECC
T ss_pred ceECCCCC-EEEEEEecc
Confidence 99999994 666665543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-18 Score=194.94 Aligned_cols=277 Identities=8% Similarity=0.073 Sum_probs=184.2
Q ss_pred eeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCC-CeEEEEecC--C-CcEEEEEe
Q psy307 300 SFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMD-CRVKLWEVY--K-ERRCVRTY 375 (1019)
Q Consensus 300 ~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~D-g~I~IWdl~--~-~~~~~~~~ 375 (1019)
.+++...|+.|.+|+...... .+.+.. ..|...+.+++|+|+ +.+|++++.+ +.|.+|++. . ....+..+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~spd-g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 80 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGA----LTLTQV-VDVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALTFAAES 80 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSC----EEEEEE-EECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred EEEeCCCCCeEEEEEECCCCc----EEEeee-EecCCCCceEEECCC-CCEEEEeecCCCeEEEEEecCCCCceeecccc
Confidence 455557899999998753111 122333 357788999999996 6667777765 999999995 2 22344455
Q ss_pred cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEE-eCCCcEEEEEccCC--CeEEEEEccccccEeEEEEecCCCEEE
Q psy307 376 YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSC-SMDCRVKLWEVYKE--HRCVRTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 376 ~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sg-s~Dg~I~IWDl~~~--~~~~~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
..+. .+.+++|+|+| ++|+++ ..++.|.+||+... ......+..+ ..+.+++|+|+|++++
T Consensus 81 ~~~~-~~~~~~~s~dg--------------~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~ 144 (343)
T 1ri6_A 81 ALPG-SLTHISTDHQG--------------QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLW 144 (343)
T ss_dssp ECSS-CCSEEEECTTS--------------SEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEE
T ss_pred ccCC-CCcEEEEcCCC--------------CEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEE
Confidence 5444 78888898888 455444 45899999999521 2233444433 4588899999999988
Q ss_pred EEE-cCCeEEEEECCC-CceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEe-cC
Q psy307 453 SAG-YDRYLKLWDTES-GECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQS-MD 529 (1019)
Q Consensus 453 S~s-~Dg~I~lWDl~t-~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs-~D 529 (1019)
+++ .++.|.+||+.+ ++....... . ........+..++|+|+|+++++++ .+
T Consensus 145 ~~~~~~~~v~~~d~~~~~~~~~~~~~-------~------------------~~~~~~~~~~~~~~~pdg~~l~~~~~~~ 199 (343)
T 1ri6_A 145 VPALKQDRICLFTVSDDGHLVAQDPA-------E------------------VTTVEGAGPRHMVFHPNEQYAYCVNELN 199 (343)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEE-------E------------------EECSTTCCEEEEEECTTSSEEEEEETTT
T ss_pred EecCCCCEEEEEEecCCCceeeeccc-------c------------------cccCCCCCcceEEECCCCCEEEEEeCCC
Confidence 888 899999999987 543221100 0 0001112345688999999776554 78
Q ss_pred CeEEEEEccCc-ccccceeEEe----ccccccceEEEEEcCCCCEEE-EEeCCCeEEEEeCC--C--CceeeeeeccCCC
Q psy307 530 NKILIFSALNR-FKLNRKKTFE----GHMVAGYACSLDFSPDMSYLI-SGDADGKCYIWDWK--T--TKLFKKWKAHDGV 599 (1019)
Q Consensus 530 g~I~iwd~~~~-~~~~~~~~l~----gh~~~~~V~~v~fspdg~~La-sgs~DG~I~IWDl~--t--~~~l~~l~~h~~~ 599 (1019)
+.|.+|++... .......... ++.....+..++|+|+|++|+ ++..++.|.+||+. + .+.+..+..+..
T Consensus 200 ~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~- 278 (343)
T 1ri6_A 200 SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ- 278 (343)
T ss_dssp TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-
T ss_pred CEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-
Confidence 99999999531 1111122222 112224577899999999877 45578999999998 3 345555655554
Q ss_pred EEEEEEcCCCCcEEEEEe-CCCcEEEE
Q psy307 600 CISTLWHPHEPSKVVTAG-WDAATAKV 625 (1019)
Q Consensus 600 V~sl~~sp~~~~~l~s~s-~Dg~I~iw 625 (1019)
+.+++|+|++. ++++++ .++.|.+|
T Consensus 279 ~~~~~~s~dg~-~l~~~~~~~~~v~v~ 304 (343)
T 1ri6_A 279 PRGFNVDHSGK-YLIAAGQKSHHISVY 304 (343)
T ss_dssp CCCEEECTTSS-EEEEECTTTCEEEEE
T ss_pred cceEEECCCCC-EEEEecCCCCeEEEE
Confidence 88999999985 555555 67888665
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-18 Score=194.30 Aligned_cols=267 Identities=10% Similarity=0.006 Sum_probs=187.5
Q ss_pred EEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEE
Q psy307 341 IRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLW 420 (1019)
Q Consensus 341 i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IW 420 (1019)
..|.++++.++++++.++.|.+||+. .++.+..+..+...+ .++|+|+|. .+++++..++.|.+|
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~-~~~~s~dg~-------------~l~~~~~~~~~i~~~ 67 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTD-TLEILNQITLGYDFV-DTAITSDCS-------------NVVVTSDFCQTLVQI 67 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETT-TCCEEEEEECCCCEE-EEEECSSSC-------------EEEEEESTTCEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCc-ccceeeeEEccCCcc-eEEEcCCCC-------------EEEEEeCCCCeEEEE
Confidence 34566667778899999999999994 456666666666667 999999883 244444558999999
Q ss_pred EccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCC---eEEEEECCCCceEEEEecCCceEEEEEecCCCeeeec-c
Q psy307 421 EVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDR---YLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLD-I 496 (1019)
Q Consensus 421 Dl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg---~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~-~ 496 (1019)
|+.........+..+...+.+++|+|+|++++++..++ .|.+||+.+++.+..+.....+.+++|+|++....+. .
T Consensus 68 d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 147 (331)
T 3u4y_A 68 ETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDR 147 (331)
T ss_dssp ECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEE
T ss_pred ECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEec
Confidence 99544433666777777766699999999998555553 8999999999999999888888999999999755442 2
Q ss_pred CCCc-ee---------------eeCCCCCcccEEEEcCCCCEEEEE-ecCCeEEEEEccCcccccceeEEeccccccceE
Q psy307 497 PVDM-KY---------------IADPTMHSMPAVTSSPNNKWLACQ-SMDNKILIFSALNRFKLNRKKTFEGHMVAGYAC 559 (1019)
Q Consensus 497 ~~~~-~~---------------i~~~~~~~i~~v~~spdg~~Lasg-s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~ 559 (1019)
.... .. ...........++|+|+|++++++ ..++.|.+||+.++........+..+ ..+.
T Consensus 148 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~---~~~~ 224 (331)
T 3u4y_A 148 SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN---NLPG 224 (331)
T ss_dssp TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS---SCCC
T ss_pred CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC---CCCc
Confidence 1111 11 011223446789999999966554 46899999999876442224445443 4567
Q ss_pred EEEEcCCCCEEEEEe-CCCeEEEEeCCCCce--eeeeecc----CC---CEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 560 SLDFSPDMSYLISGD-ADGKCYIWDWKTTKL--FKKWKAH----DG---VCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 560 ~v~fspdg~~Lasgs-~DG~I~IWDl~t~~~--l~~l~~h----~~---~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.++|+|||++|+.++ .++.|.+||+.+++. +..+..+ .. .+.+++|+|++..+++++..++.|.+|
T Consensus 225 ~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 300 (331)
T 3u4y_A 225 TIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVF 300 (331)
T ss_dssp CEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEE
Confidence 899999999776554 578899999999877 4444322 22 235689999995444555556677554
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4e-19 Score=230.83 Aligned_cols=269 Identities=7% Similarity=-0.022 Sum_probs=201.8
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
...+.+|.+.|.++.|+++ .++++++.||.++||.+...+.....+..|. .+..++|+|+| +.
T Consensus 196 ~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG--------------~~ 258 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDG--------------RR 258 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESS--------------SC
T ss_pred eEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCC--------------CE
Confidence 3456889999999999985 7788888999999998754444455666665 45677888888 45
Q ss_pred EEEEeCCCcEEEEEccCCCeEEEEEcc-----------ccccEeEEEEe-cCCCEEEEEEcCCeEEEEECCCCceEEEEe
Q psy307 408 LLSCSMDCRVKLWEVYKEHRCVRTYYG-----------HRQAVRDICFN-NTGTNFISAGYDRYLKLWDTESGECISRFT 475 (1019)
Q Consensus 408 L~sgs~Dg~I~IWDl~~~~~~~~~l~~-----------H~~~V~sl~fs-pdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~ 475 (1019)
|+.+ .++.|.+||+ ...... .+.+ |...+.+++|+ |+|+++++++ ++.|.+|++.++.......
T Consensus 259 la~~-~~~~i~~~d~-~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~ 334 (1045)
T 1k32_A 259 ILFS-KGGSIYIFNP-DTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPE 334 (1045)
T ss_dssp EEEE-ETTEEEEECT-TTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSC
T ss_pred EEEE-eCCEEEEecC-CceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccC
Confidence 5555 4899999998 333333 5544 45579999999 9999999887 8899999999887654333
Q ss_pred cCC-ceEEEEEecCCCeeee-----------ccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccc
Q psy307 476 SRK-VAYCVKFHPDEDKQHL-----------DIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKL 543 (1019)
Q Consensus 476 ~~~-~v~~v~~~p~~~~~~~-----------~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~ 543 (1019)
... .+..++|+ ++..+++ +...........+...+..++|+|+|++|++++.++.|++||+.++.
T Consensus 335 ~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~-- 411 (1045)
T 1k32_A 335 PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK-- 411 (1045)
T ss_dssp CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC--
T ss_pred CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc--
Confidence 334 67788888 6654333 11111111112445667899999999999999999999999998763
Q ss_pred cceeEEeccccccceEEEEEcCCCCEEEEEeCCC----------eEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEE
Q psy307 544 NRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG----------KCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKV 613 (1019)
Q Consensus 544 ~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG----------~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l 613 (1019)
......+|. +.+.+++|||||++|++++.++ .|++||+.+++ +..+..|...+.+++|+|+| ..|
T Consensus 412 -~~~~~~~~~--~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG-~~l 486 (1045)
T 1k32_A 412 -PTVIERSRE--AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADS-KNL 486 (1045)
T ss_dssp -EEEEEECSS--SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTS-CEE
T ss_pred -eEEeccCCC--CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCC-CEE
Confidence 334444665 5678899999999999887654 89999999887 67777888889999999999 578
Q ss_pred EEEeCCCcEEEE
Q psy307 614 VTAGWDAATAKV 625 (1019)
Q Consensus 614 ~s~s~Dg~I~iw 625 (1019)
++++.++....|
T Consensus 487 ~~~s~~~~~~~~ 498 (1045)
T 1k32_A 487 YYLSYRSLDPSP 498 (1045)
T ss_dssp EEEESCCCCCEE
T ss_pred EEEecccCCcCc
Confidence 888887776665
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.4e-18 Score=204.64 Aligned_cols=261 Identities=13% Similarity=0.127 Sum_probs=196.2
Q ss_pred EcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEc
Q psy307 343 WFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422 (1019)
Q Consensus 343 fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl 422 (1019)
|+|+ +.++++++.|++|.+||. ..++++.++..+.. +..++|+|+| ++|++++.|++|.+||+
T Consensus 145 ~~p~-~~~~vs~~~d~~V~v~D~-~t~~~~~~i~~g~~-~~~v~~spdg--------------~~l~v~~~d~~V~v~D~ 207 (543)
T 1nir_A 145 LDLP-NLFSVTLRDAGQIALVDG-DSKKIVKVIDTGYA-VHISRMSASG--------------RYLLVIGRDARIDMIDL 207 (543)
T ss_dssp CCGG-GEEEEEEGGGTEEEEEET-TTCCEEEEEECSTT-EEEEEECTTS--------------CEEEEEETTSEEEEEET
T ss_pred cCCC-CEEEEEEcCCCeEEEEEC-CCceEEEEEecCcc-cceEEECCCC--------------CEEEEECCCCeEEEEEC
Confidence 6774 788999999999999999 55677888873333 8899999999 68999999999999999
Q ss_pred c-CCCeEEEEEccccccEeEEEEec----CCCEEEEEEc-CCeEEEEECCCCceEEEEecC------------CceEEEE
Q psy307 423 Y-KEHRCVRTYYGHRQAVRDICFNN----TGTNFISAGY-DRYLKLWDTESGECISRFTSR------------KVAYCVK 484 (1019)
Q Consensus 423 ~-~~~~~~~~l~~H~~~V~sl~fsp----dg~~l~S~s~-Dg~I~lWDl~t~~~i~~~~~~------------~~v~~v~ 484 (1019)
. .+.+++..+. +...+.+++|+| +|++++++++ +++|.+||..+++++.++... ..+..+.
T Consensus 208 ~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~ 286 (543)
T 1nir_A 208 WAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII 286 (543)
T ss_dssp TSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEE
T ss_pred cCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEE
Confidence 3 3456677776 455679999999 9999998885 899999999999999888652 2577899
Q ss_pred EecCCCeeeeccCCCce-ee------------eCCCCCcccEEEEcCCCCEEEEEe-cCCeEEEEEccCcccccceeEEe
Q psy307 485 FHPDEDKQHLDIPVDMK-YI------------ADPTMHSMPAVTSSPNNKWLACQS-MDNKILIFSALNRFKLNRKKTFE 550 (1019)
Q Consensus 485 ~~p~~~~~~~~~~~~~~-~i------------~~~~~~~i~~v~~spdg~~Lasgs-~Dg~I~iwd~~~~~~~~~~~~l~ 550 (1019)
++|++...++....... .+ .......+..+.|+|+|++|++++ .+++|.+||+.++.. ...+.
T Consensus 287 ~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l---~~~i~ 363 (543)
T 1nir_A 287 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL---SALVD 363 (543)
T ss_dssp ECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE---EEEEE
T ss_pred ECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE---EEeec
Confidence 99987655442211110 00 112334567899999999876654 589999999998743 34444
Q ss_pred c----cccccceEEEEEcCC-CCEEEEEe-CCCeEEEEeCCC-------CceeeeeeccCCCEEEEEEcCCCCcEEEEEe
Q psy307 551 G----HMVAGYACSLDFSPD-MSYLISGD-ADGKCYIWDWKT-------TKLFKKWKAHDGVCISTLWHPHEPSKVVTAG 617 (1019)
Q Consensus 551 g----h~~~~~V~~v~fspd-g~~Lasgs-~DG~I~IWDl~t-------~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s 617 (1019)
. |. +....+ ++|+ |.+++++. .|++|.|||+.+ ++.++++.+|.+.+..+++||++ ..|++++
T Consensus 364 ~g~~ph~--g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg-~~l~v~~ 439 (543)
T 1nir_A 364 VGKTPHP--GRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDT 439 (543)
T ss_dssp CSSSBCC--TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC-CEEEECC
T ss_pred cCCCCCC--CCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCC-CcEEEec
Confidence 3 32 222223 4777 66677775 689999999998 89999999998888999999998 5777776
Q ss_pred -------CCCcEEEEeccc
Q psy307 618 -------WDAATAKVQDAN 629 (1019)
Q Consensus 618 -------~Dg~I~iwwd~~ 629 (1019)
.+++|.+| |.+
T Consensus 440 ~~~~~~~~~~~v~v~-d~~ 457 (543)
T 1nir_A 440 TFNPDARISQSVAVF-DLK 457 (543)
T ss_dssp TTCSSHHHHTCEEEE-ETT
T ss_pred CCCCCcccCceEEEE-ECC
Confidence 26688554 544
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-18 Score=213.40 Aligned_cols=297 Identities=9% Similarity=0.001 Sum_probs=207.8
Q ss_pred CCCCCCCCeeeeCCC-CC-----ceeeecCCCCCCccCCccceeeeccCC------------------------CCeEEE
Q psy307 292 DPTDYQGRSFLHPPH-DV-----GTNLRSDTPPDRCFLPKTQVHTWEGHT------------------------KGISAI 341 (1019)
Q Consensus 292 ~~~~~~gr~~~~~~~-D~-----~v~lw~~~~~~~~~lp~~~i~~l~gH~------------------------~~V~~i 341 (1019)
..++++|+.++++.. |+ .|.+|+..... ....+.+|. ..|.++
T Consensus 42 ~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 42 PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ-------TRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp EEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC-------EEEEECGGGTC--------------------CCEESCCC
T ss_pred ceEecCCCEEEEEeccCCCCcccEEEEEECCCCc-------eeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 357889999999887 87 89999876432 233333332 238999
Q ss_pred EEcCCCCcEEEEeeCCCeEEEEecCCCc-EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEE
Q psy307 342 RWFPKSAHLLLSCSMDCRVKLWEVYKER-RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLW 420 (1019)
Q Consensus 342 ~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IW 420 (1019)
+|+|| |++|++++. +.|.+||+.... .....+..|...+.+++|+||| ++|+.++ ++.|++|
T Consensus 115 ~~SpD-g~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG--------------~~la~~~-~~~i~~~ 177 (741)
T 2ecf_A 115 QWSPD-AQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKG--------------GFVSFIR-GRNLWVI 177 (741)
T ss_dssp EECTT-SSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTS--------------SEEEEEE-TTEEEEE
T ss_pred EECCC-CCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCC--------------CEEEEEe-CCcEEEE
Confidence 99996 777777776 999999995431 0345577788889999999999 5677666 4699999
Q ss_pred EccCCCeEEEEEcccccc----------------EeEEEEecCCCEEEEEEcCC--------------------------
Q psy307 421 EVYKEHRCVRTYYGHRQA----------------VRDICFNNTGTNFISAGYDR-------------------------- 458 (1019)
Q Consensus 421 Dl~~~~~~~~~l~~H~~~----------------V~sl~fspdg~~l~S~s~Dg-------------------------- 458 (1019)
|+ .++........+... +.+++|+|||++|++++.|+
T Consensus 178 d~-~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~ 256 (741)
T 2ecf_A 178 DL-ASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAA 256 (741)
T ss_dssp ET-TTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBT
T ss_pred ec-CCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCC
Confidence 99 445555544444332 47899999999999998876
Q ss_pred -------eEEEEECCC-CceEEEEe---cCCceEEEEEecCCCeeeeccC---------------C-CceeeeCCCC-C-
Q psy307 459 -------YLKLWDTES-GECISRFT---SRKVAYCVKFHPDEDKQHLDIP---------------V-DMKYIADPTM-H- 509 (1019)
Q Consensus 459 -------~I~lWDl~t-~~~i~~~~---~~~~v~~v~~~p~~~~~~~~~~---------------~-~~~~i~~~~~-~- 509 (1019)
.|.+||+.+ ++...... ....+..++| |++..+++... . ....+...+. .
T Consensus 257 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 335 (741)
T 2ecf_A 257 GDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTW 335 (741)
T ss_dssp TSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred CCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCc
Confidence 899999998 87655442 3356789999 99987664211 0 0111111111 1
Q ss_pred --cccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEE-EEcCCCCEEEE-EeCCC--eEEEEe
Q psy307 510 --SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSL-DFSPDMSYLIS-GDADG--KCYIWD 583 (1019)
Q Consensus 510 --~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v-~fspdg~~Las-gs~DG--~I~IWD 583 (1019)
.+..++|+|+|+++++++.||.+.||.+.... . ...+..+. ..+..+ .|+|||+.|+. ++.++ .++||+
T Consensus 336 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~--~-~~~l~~~~--~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 336 VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG--K-AAALTHGN--WSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS--C-EEESCCSS--SCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred CCcCCceEECCCCeEEEEecCCCccEEEEEcCCC--C-eeeeeecc--eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 34688999999999999999988888765221 1 34455554 457676 59999997754 55555 899999
Q ss_pred CCC-CceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCC
Q psy307 584 WKT-TKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 584 l~t-~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
+.. +.....+.. ...+.+++|+|++..++++++...
T Consensus 411 ~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~ 447 (741)
T 2ecf_A 411 VPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNS 447 (741)
T ss_dssp EETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETT
T ss_pred EEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCC
Confidence 864 565666665 566889999999965555555544
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-17 Score=185.10 Aligned_cols=268 Identities=9% Similarity=0.032 Sum_probs=193.7
Q ss_pred CCCCCCCeeeeCCC-------CCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEec
Q psy307 293 PTDYQGRSFLHPPH-------DVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEV 365 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~-------D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl 365 (1019)
.++++|+.++.+.. ++.|.+|+... .+.+..+... ..+.+++|+|++..+++++..++.|.+||.
T Consensus 47 ~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~-------~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 47 AYSQQENALWLATSQSRKLDKGGVVYRLDPVT-------LEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EEETTTTEEEEEECCCTTTEESEEEEEECTTT-------CCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EECCCCCEEEEEcCCCcCCCCCccEEEEcCCC-------CeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 35667777665553 56788887653 2344555443 357889999985557777777899999999
Q ss_pred CCCcEEEEEecccCcc---------EeEEEEcCCCCceeEEEeecCCCCcEEEEEe--CCCcEEEEEccCCCeEEEEEcc
Q psy307 366 YKERRCVRTYYGHRQA---------VRDICFNNTGTNFISAIRWFPKSAHLLLSCS--MDCRVKLWEVYKEHRCVRTYYG 434 (1019)
Q Consensus 366 ~~~~~~~~~~~gh~~~---------V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs--~Dg~I~IWDl~~~~~~~~~l~~ 434 (1019)
. .++.+..+..+... +.+++|+|+| +.+++++ .++.|.+||+ ..++....+..
T Consensus 119 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--------------~~l~~~~~~~~~~i~~~d~-~~~~~~~~~~~ 182 (353)
T 3vgz_A 119 K-TGEVKGRLVLDDRKRTEEVRPLQPRELVADDAT--------------NTVYISGIGKESVIWVVDG-GNIKLKTAIQN 182 (353)
T ss_dssp T-TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTT--------------TEEEEEEESSSCEEEEEET-TTTEEEEEECC
T ss_pred C-CCeeEEEEecCCCccccccCCCCCceEEECCCC--------------CEEEEEecCCCceEEEEcC-CCCceEEEecC
Confidence 4 45556666554322 6778888877 3444444 5789999999 56677777776
Q ss_pred ccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEE
Q psy307 435 HRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAV 514 (1019)
Q Consensus 435 H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v 514 (1019)
+...+.+++|+|+|+++++++.++.|.+||+.+++.+..+.... ..+...+..+
T Consensus 183 ~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~--------------------------~~~~~~~~~~ 236 (353)
T 3vgz_A 183 TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLD--------------------------DGKEHFFINI 236 (353)
T ss_dssp CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCC--------------------------SSSCCCEEEE
T ss_pred CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCC--------------------------CCCCcccceE
Confidence 66778899999999999999999999999999998876665321 0112345568
Q ss_pred EEcCCCCEEEEEec-CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeee
Q psy307 515 TSSPNNKWLACQSM-DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD-ADGKCYIWDWKTTKLFKK 592 (1019)
Q Consensus 515 ~~spdg~~Lasgs~-Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl~t~~~l~~ 592 (1019)
+++|+|+++++++. ++.|.+||..++.. ...+.... ...++|+|+|++++.++ .++.|.+||..+++.+..
T Consensus 237 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~---~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~ 309 (353)
T 3vgz_A 237 SLDTARQRAFITDSKAAEVLVVDTRNGNI---LAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKT 309 (353)
T ss_dssp EEETTTTEEEEEESSSSEEEEEETTTCCE---EEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCcE---EEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence 88999987777665 48999999987643 33333322 24689999999666555 689999999999999888
Q ss_pred eeccCCCEEEEEEcCCCCcEEEEEeCC
Q psy307 593 WKAHDGVCISTLWHPHEPSKVVTAGWD 619 (1019)
Q Consensus 593 l~~h~~~V~sl~~sp~~~~~l~s~s~D 619 (1019)
+..+. .+.+++|+|++. .++.+..+
T Consensus 310 ~~~~~-~~~~~~~s~dg~-~l~v~~~~ 334 (353)
T 3vgz_A 310 FDTPT-HPNSLALSADGK-TLYVSVKQ 334 (353)
T ss_dssp EECCS-EEEEEEECTTSC-EEEEEEEC
T ss_pred EecCC-CCCeEEEcCCCC-EEEEEEcc
Confidence 87654 679999999985 44444444
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-18 Score=215.77 Aligned_cols=267 Identities=12% Similarity=0.023 Sum_probs=192.1
Q ss_pred CCCeEEEEEcCCCCcEEEEeeC-CC-----eEEEEecCCCcEEEEEecccCc------------------------cEeE
Q psy307 335 TKGISAIRWFPKSAHLLLSCSM-DC-----RVKLWEVYKERRCVRTYYGHRQ------------------------AVRD 384 (1019)
Q Consensus 335 ~~~V~~i~fspd~g~lLaSgs~-Dg-----~I~IWdl~~~~~~~~~~~gh~~------------------------~V~~ 384 (1019)
...|.+++|+|| |++|++++. |+ .|++||+. +++....+..+.. .|.+
T Consensus 36 ~~~~~~~~~Spd-G~~la~~~~~d~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPD-GSRVTFLRGKDSDRNQLDLWSYDIG-SGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTT-SSEEEEEECCSSCTTEEEEEEEETT-TCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecC-CCEEEEEeccCCCCcccEEEEEECC-CCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 457999999996 788888887 88 99999994 4455555554433 3778
Q ss_pred EEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC-eEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEE
Q psy307 385 ICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH-RCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLW 463 (1019)
Q Consensus 385 i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lW 463 (1019)
++|+||| ++|++++. +.|++||+.... .....+..|...+.+++|+|||++|++++ ++.|.+|
T Consensus 114 ~~~SpDg--------------~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~ 177 (741)
T 2ecf_A 114 YQWSPDA--------------QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVI 177 (741)
T ss_dssp CEECTTS--------------SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEE
T ss_pred eEECCCC--------------CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEE
Confidence 8888888 56777665 999999995431 03445677888999999999999999887 5699999
Q ss_pred ECCCCceEEEEecCCc-----------------eEEEEEecCCCeeeeccCCC---------------------------
Q psy307 464 DTESGECISRFTSRKV-----------------AYCVKFHPDEDKQHLDIPVD--------------------------- 499 (1019)
Q Consensus 464 Dl~t~~~i~~~~~~~~-----------------v~~v~~~p~~~~~~~~~~~~--------------------------- 499 (1019)
|+.+++.......+.. +..+.|+|++..+++.....
T Consensus 178 d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g 257 (741)
T 2ecf_A 178 DLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAG 257 (741)
T ss_dssp ETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTT
T ss_pred ecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCC
Confidence 9999877654443322 46799999998765531100
Q ss_pred ------ceeeeC--------------CCCCcccEEEEcCCCCEEEEEec-----CCeEEEEEccCcccccceeEEecccc
Q psy307 500 ------MKYIAD--------------PTMHSMPAVTSSPNNKWLACQSM-----DNKILIFSALNRFKLNRKKTFEGHMV 554 (1019)
Q Consensus 500 ------~~~i~~--------------~~~~~i~~v~~spdg~~Lasgs~-----Dg~I~iwd~~~~~~~~~~~~l~gh~~ 554 (1019)
...+.+ .+...+..++| |||++|++++. ++.|.+||+.++.. ...+..+.
T Consensus 258 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~---~~~~~~~~- 332 (741)
T 2ecf_A 258 DANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ---RVLAHETS- 332 (741)
T ss_dssp SCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE---EEEEEEEC-
T ss_pred CCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce---EEEEEcCC-
Confidence 111111 13345678999 99999998764 56899999987632 23333332
Q ss_pred cc---ceEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeeeeeccCCCEEEE-EEcCCCCcEEEEEeCCC--cEEEE
Q psy307 555 AG---YACSLDFSPDMSYLISGDADGKCYIWDWK-TTKLFKKWKAHDGVCIST-LWHPHEPSKVVTAGWDA--ATAKV 625 (1019)
Q Consensus 555 ~~---~V~~v~fspdg~~Lasgs~DG~I~IWDl~-t~~~l~~l~~h~~~V~sl-~~sp~~~~~l~s~s~Dg--~I~iw 625 (1019)
.. .+..++|+|||+++++++.||.++||.+. +++ ...+..|...|.++ .|+|++..++++++.|+ .+.+|
T Consensus 333 ~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~ 409 (741)
T 2ecf_A 333 PTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIY 409 (741)
T ss_dssp SSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEE
T ss_pred CCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEE
Confidence 12 24578999999999999999988888765 455 77888888888887 59999965556666665 66555
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.5e-18 Score=217.86 Aligned_cols=380 Identities=13% Similarity=0.105 Sum_probs=245.3
Q ss_pred CCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCC------CeEEEEecCCCcEE
Q psy307 298 GRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMD------CRVKLWEVYKERRC 371 (1019)
Q Consensus 298 gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~D------g~I~IWdl~~~~~~ 371 (1019)
|+.++.... +.+.+|+.... ....+.+|.+.|.+++|||| |+.|++++.+ ..|.+|++.. +.
T Consensus 24 ~~~iaf~~~-~~l~~~~~~gg--------~~~~lt~~~~~v~~~~~SPD-G~~la~~s~~~~~~~~~~i~~~d~~~-g~- 91 (1045)
T 1k32_A 24 GDRIIFVCC-DDLWEHDLKSG--------STRKIVSNLGVINNARFFPD-GRKIAIRVMRGSSLNTADLYFYNGEN-GE- 91 (1045)
T ss_dssp TTEEEEEET-TEEEEEETTTC--------CEEEEECSSSEEEEEEECTT-SSEEEEEEEESTTCCEEEEEEEETTT-TE-
T ss_pred CCEEEEEEC-CcEEEEECCCC--------cEEEeeeCCCcccCeEECCC-CCEEEEEEeeccCCCCCeEEEEECCC-CC-
Confidence 456665544 57888876532 35678899999999999997 6777766543 4799999844 33
Q ss_pred EEEecccCccE-------eEEEEcCCCCceeEEE---------------------------------eecCCCCcEEEEE
Q psy307 372 VRTYYGHRQAV-------RDICFNNTGTNFISAI---------------------------------RWFPKSAHLLLSC 411 (1019)
Q Consensus 372 ~~~~~gh~~~V-------~~i~fspdg~~~vs~i---------------------------------~~~p~~~~~L~sg 411 (1019)
.+.+..|...+ ..++|+|||. ++... +|+| + +++++
T Consensus 92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg~-ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~sp--G-~l~~~ 167 (1045)
T 1k32_A 92 IKRITYFSGKSTGRRMFTDVAGFDPDGN-LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFAD--G-RRVIG 167 (1045)
T ss_dssp EEECCCCCEEEETTEECSEEEEECTTCC-EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEET--T-EEEEE
T ss_pred eEEcccCCCcccccccccccccCCCCCE-EEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCC--C-EEEEe
Confidence 57788898888 8999999996 22111 1222 1 34444
Q ss_pred eC------------CCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCC-CceEEEEecCC
Q psy307 412 SM------------DCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTES-GECISRFTSRK 478 (1019)
Q Consensus 412 s~------------Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t-~~~i~~~~~~~ 478 (1019)
+. +....+|.....+ ....+.+|...+.++.|+++ ..+++++.|+++.||.+.. +.....+..+.
T Consensus 168 ~~~~~~~~~~~~~g~~~~~lw~~~~~~-~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~ 245 (1045)
T 1k32_A 168 RNTFELPHWKGYRGGTRGKIWIEVNSG-AFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT 245 (1045)
T ss_dssp ESCSCCTTSTTCCSTTCCEEEEEEETT-EEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC
T ss_pred ccCCCccccccccCCCcCCEEEECCCC-CeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC
Confidence 31 2334555433332 33445789999999999988 5667778889999998653 33445555555
Q ss_pred ceEEEEEecCCCeeeeccCCCce-------eeeCC-------------CCCcccEEEEc-CCCCEEEEEecCCeEEEEEc
Q psy307 479 VAYCVKFHPDEDKQHLDIPVDMK-------YIADP-------------TMHSMPAVTSS-PNNKWLACQSMDNKILIFSA 537 (1019)
Q Consensus 479 ~v~~v~~~p~~~~~~~~~~~~~~-------~i~~~-------------~~~~i~~v~~s-pdg~~Lasgs~Dg~I~iwd~ 537 (1019)
.+.+.+|+|++..+++....... .+... +...+..++|+ |+|++|++++ ++.|.+|++
T Consensus 246 ~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~ 324 (1045)
T 1k32_A 246 DYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDV 324 (1045)
T ss_dssp SSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred CcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcC
Confidence 56778999999866543211111 01111 12258899999 9999999988 889999998
Q ss_pred cCcccccceeEEecccccc-ceEEEEEcCCCCEEEEEeCCCeEE-EEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEE
Q psy307 538 LNRFKLNRKKTFEGHMVAG-YACSLDFSPDMSYLISGDADGKCY-IWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVT 615 (1019)
Q Consensus 538 ~~~~~~~~~~~l~gh~~~~-~V~~v~fspdg~~Lasgs~DG~I~-IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s 615 (1019)
.++. ...+..|. + .+..++|+ ||+.|++++.++.+. +||+.+++... +.+|...+.+++|+|+| .+|++
T Consensus 325 ~~~~----~~~~~~~~--~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG-~~la~ 395 (1045)
T 1k32_A 325 SGTY----VLKVPEPL--RIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNG-KFAVV 395 (1045)
T ss_dssp TSSB----EEECSCCS--CEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTS-SEEEE
T ss_pred CCCc----eEEccCCC--cceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCC-CEEEE
Confidence 7653 22344443 3 68899999 999999999888899 99998876544 44788899999999998 68999
Q ss_pred EeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccC-CCceeEEEeecC---------CCceEE
Q psy307 616 AGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLS-DSEQYALQFSET---------NNKNYI 685 (1019)
Q Consensus 616 ~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls-~~e~~al~~sd~---------~~~~~i 685 (1019)
++.++.|++| +....+.......+...+ ....++ ++..++....++ ....++
T Consensus 396 ~~~~~~v~~~-d~~tg~~~~~~~~~~~~v-----------------~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~ 457 (1045)
T 1k32_A 396 ANDRFEIMTV-DLETGKPTVIERSREAMI-----------------TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY 457 (1045)
T ss_dssp EETTSEEEEE-ETTTCCEEEEEECSSSCC-----------------CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred ECCCCeEEEE-ECCCCceEEeccCCCCCc-----------------cceEECCCCCeEEEEecCccccccCCCCCeEEEE
Confidence 9999988654 554433222111111100 011122 222222222211 122233
Q ss_pred ecccccc--c--cCCceEEEEecCCccHHHHHhhcCCCchhhHH
Q psy307 686 TEKNRNE--I--KNGSVLRLAFSASKTADDILSKLSDKNASLEE 725 (1019)
Q Consensus 686 t~~~~~~--I--~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~ 725 (1019)
....+.. + +...+..++|+|++ +.|+..+.++..++|.
T Consensus 458 d~~~g~~~~l~~~~~~~~~~~~spdG--~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 458 DMEGRKIFAATTENSHDYAPAFDADS--KNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp ETTTTEEEECSCSSSBEEEEEECTTS--CEEEEEESCCCCCEEC
T ss_pred ECCCCcEEEeeCCCcccCCceEcCCC--CEEEEEecccCCcCcc
Confidence 3222221 1 35568889999999 6677777777766665
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-17 Score=186.71 Aligned_cols=266 Identities=11% Similarity=0.012 Sum_probs=189.3
Q ss_pred CeeeeCCCCCceeeecCCCCCCccCCccceeeecc-CCC-CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec
Q psy307 299 RSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEG-HTK-GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY 376 (1019)
Q Consensus 299 r~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~g-H~~-~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~ 376 (1019)
+.++++..++.|.+|+... .+.+..+.. +.. .+.+++|+|++..++++++.++.|.+||+.. ++.+..+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~ 73 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEK-------MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRID 73 (337)
T ss_dssp EEEEEEETTTEEEEEETTT-------TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEE
T ss_pred cEEEEcCCCCeEEEEECCC-------CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC-CCeEeeEE
Confidence 3577888899999998753 234555543 322 4889999998556677778889999999944 45555444
Q ss_pred c-c----CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe------------CCCcEEEEEccCCCeEEEEEccccccE
Q psy307 377 G-H----RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS------------MDCRVKLWEVYKEHRCVRTYYGHRQAV 439 (1019)
Q Consensus 377 g-h----~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs------------~Dg~I~IWDl~~~~~~~~~l~~H~~~V 439 (1019)
. + ...+.+++|+|+| ++|++++ .++.|.+||+ ..++....+.. ...+
T Consensus 74 ~~~~~~~~~~~~~~~~s~dg--------------~~l~~~~~~~~~~~~~~~~~~~~i~v~d~-~~~~~~~~~~~-~~~~ 137 (337)
T 1pby_B 74 LSTPEERVKSLFGAALSPDG--------------KTLAIYESPVRLELTHFEVQPTRVALYDA-ETLSRRKAFEA-PRQI 137 (337)
T ss_dssp CCBTTEEEECTTCEEECTTS--------------SEEEEEEEEEEECSSCEEECCCEEEEEET-TTTEEEEEEEC-CSSC
T ss_pred cCCcccccccccceEECCCC--------------CEEEEEecccccccccccccCceEEEEEC-CCCcEEEEEeC-CCCc
Confidence 2 2 2257788888888 4566664 5799999999 55566655554 4567
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCc-------------------
Q psy307 440 RDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDM------------------- 500 (1019)
Q Consensus 440 ~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~------------------- 500 (1019)
.+++|+|+|++++++ ++.|.+||+.+++.+..+........+.|+|++....+......
T Consensus 138 ~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (337)
T 1pby_B 138 TMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT 215 (337)
T ss_dssp CCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred ceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccc
Confidence 888999999988887 78999999999998887765442223367777764433211110
Q ss_pred -----eeeeC------------CCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEE
Q psy307 501 -----KYIAD------------PTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDF 563 (1019)
Q Consensus 501 -----~~i~~------------~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~f 563 (1019)
..+.+ .+...+..++++|+|++++++ ++.|.+||+.++.. ...+..+ ..+.+++|
T Consensus 216 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~---~~~~~~~---~~~~~~~~ 287 (337)
T 1pby_B 216 AYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNAS---IKRVPLP---HSYYSVNV 287 (337)
T ss_dssp GEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEE---EEEEECS---SCCCEEEE
T ss_pred ccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcC---cceecCC---CceeeEEE
Confidence 01111 122345579999999999888 79999999987632 3334332 34678999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCC
Q psy307 564 SPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDG 598 (1019)
Q Consensus 564 spdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~ 598 (1019)
+|||++|++++.++.|.+||+.+++.+..+..+.+
T Consensus 288 s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 288 STDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp CTTSCEEEEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred CCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCCC
Confidence 99999999999999999999999999988876543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.3e-17 Score=183.72 Aligned_cols=273 Identities=9% Similarity=0.055 Sum_probs=178.0
Q ss_pred CCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeC--CCeEEEEecCCCc-EEEEEecccCccE
Q psy307 306 HDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSM--DCRVKLWEVYKER-RCVRTYYGHRQAV 382 (1019)
Q Consensus 306 ~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~--Dg~I~IWdl~~~~-~~~~~~~gh~~~V 382 (1019)
.+..+.+|......... ..+ ....+...+..++|+|+ +.+++++.. ++.|.+|++.... +.+..+..+...+
T Consensus 14 ~~~~i~v~~~d~~tg~~---~~~-~~~~~~~~p~~~a~spd-g~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p 88 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTL---TND-GLLAATQNPTYLALSAK-DCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPP 88 (347)
T ss_dssp SCCEEEEEEEETTTTEE---EEE-EEEEECSCCCCEEECTT-CEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCC
T ss_pred CCCCEEEEEEcCCCCeE---EEe-eeeeccCCcceEEEccC-CeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCC
Confidence 45677888765422110 111 23445677889999996 554444432 7999999994332 2445556677888
Q ss_pred eEEEEcCCCCceeEEEeecCCCCcEEEEEe-CCCcEEEEEccCCCe--EEEEEcc---------ccccEeEEEEecCCCE
Q psy307 383 RDICFNNTGTNFISAIRWFPKSAHLLLSCS-MDCRVKLWEVYKEHR--CVRTYYG---------HRQAVRDICFNNTGTN 450 (1019)
Q Consensus 383 ~~i~fspdg~~~vs~i~~~p~~~~~L~sgs-~Dg~I~IWDl~~~~~--~~~~l~~---------H~~~V~sl~fspdg~~ 450 (1019)
..++|+|+| ++|++++ .++.|.+|++...+. .+..+.. +...+.+++|+|+|+.
T Consensus 89 ~~~a~spdg--------------~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l 154 (347)
T 3hfq_A 89 AYVAVDEAR--------------QLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRL 154 (347)
T ss_dssp SEEEEETTT--------------TEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCE
T ss_pred EEEEECCCC--------------CEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcE
Confidence 999999998 5666666 789999999954433 2222221 1234889999999996
Q ss_pred EEEEEcCCeEEEEECC-CCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEE-Eec
Q psy307 451 FISAGYDRYLKLWDTE-SGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLAC-QSM 528 (1019)
Q Consensus 451 l~S~s~Dg~I~lWDl~-t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Las-gs~ 528 (1019)
+++...++.|.+||+. +++...... +. .........++|+|+|+++++ +..
T Consensus 155 ~v~~~~~~~v~~~~~~~~g~~~~~~~-------~~--------------------~~~g~~p~~~~~spdg~~l~v~~~~ 207 (347)
T 3hfq_A 155 AVIDLGSDKVYVYNVSDAGQLSEQSV-------LT--------------------MEAGFGPRHLVFSPDGQYAFLAGEL 207 (347)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEEEE-------EE--------------------CCTTCCEEEEEECTTSSEEEEEETT
T ss_pred EEEeCCCCEEEEEEECCCCcEEEeee-------EE--------------------cCCCCCCceEEECCCCCEEEEEeCC
Confidence 5566668899999998 444321110 00 011123446889999996655 567
Q ss_pred CCeEEEEEccCc-ccccceeEEeccccc----cceEEEEEcCCCCEE-EEEeCCCeEEEEeCCC---CceeeeeeccCCC
Q psy307 529 DNKILIFSALNR-FKLNRKKTFEGHMVA----GYACSLDFSPDMSYL-ISGDADGKCYIWDWKT---TKLFKKWKAHDGV 599 (1019)
Q Consensus 529 Dg~I~iwd~~~~-~~~~~~~~l~gh~~~----~~V~~v~fspdg~~L-asgs~DG~I~IWDl~t---~~~l~~l~~h~~~ 599 (1019)
++.|.+|++... ..+.....+...... ..+..++|+|||++| +++..++.|.+||+.. .+.+..+..+...
T Consensus 208 ~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~ 287 (347)
T 3hfq_A 208 SSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDF 287 (347)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSC
T ss_pred CCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCC
Confidence 889999998741 122222333322211 347889999999987 5556689999999973 2456666666667
Q ss_pred EEEEEEcCCCCcEEEEEeCC-CcEEEE
Q psy307 600 CISTLWHPHEPSKVVTAGWD-AATAKV 625 (1019)
Q Consensus 600 V~sl~~sp~~~~~l~s~s~D-g~I~iw 625 (1019)
+.+++|+|++. +|++++.+ +.|.+|
T Consensus 288 ~~~~~~spdg~-~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 288 PRDFDLDPTEA-FVVVVNQNTDNATLY 313 (347)
T ss_dssp CCEEEECTTSS-EEEEEETTTTEEEEE
T ss_pred cCeEEECCCCC-EEEEEEcCCCcEEEE
Confidence 89999999994 66666654 666554
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.79 E-value=4e-18 Score=212.13 Aligned_cols=301 Identities=8% Similarity=-0.034 Sum_probs=199.6
Q ss_pred CCCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCC---CeEEEEEcCCCCcEEEEeeCC---------Ce
Q psy307 292 DPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTK---GISAIRWFPKSAHLLLSCSMD---------CR 359 (1019)
Q Consensus 292 ~~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~---~V~~i~fspd~g~lLaSgs~D---------g~ 359 (1019)
..++++|+.+++ +.|+.+.+|+.... +....+.+|.. .|.+++|||| |++|++++.+ +.
T Consensus 22 ~~~spdg~~~~~-~~dg~i~~~d~~~g-------~~~~~~~~~~~~~~~v~~~~~SpD-g~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 22 AKWISDTEFIYR-EQKGTVRLWNVETN-------TSTVLIEGKKIESLRAIRYEISPD-REYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGC-------CCEEEECTTTTTTTTCSEEEECTT-SSEEEEEESCCCCSSSCCCSE
T ss_pred cEEcCCCcEEEE-eCCCCEEEEECCCC-------cEEEEeccccccccccceEEECCC-CCEEEEEecCccceeecceee
Confidence 467889996655 68999999987633 33456667765 4999999996 7788888764 78
Q ss_pred EEEEecCCCcE-EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcccccc
Q psy307 360 VKLWEVYKERR-CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQA 438 (1019)
Q Consensus 360 I~IWdl~~~~~-~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~ 438 (1019)
|.+||+..... .+....+|...+..++||||| +.|+.++. +.|++||+. ++........+...
T Consensus 93 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG--------------~~la~~~~-~~i~~~~~~-~g~~~~~~~~~~~~ 156 (723)
T 1xfd_A 93 YVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG--------------QQLIFIFE-NNIYYCAHV-GKQAIRVVSTGKEG 156 (723)
T ss_dssp EEEEESSSCCCEECCCTTCCSCCCSBCCBCSST--------------TCEEEEET-TEEEEESSS-SSCCEEEECCCBTT
T ss_pred EEEEECCCCceEeccCCccccccccccEECCCC--------------CEEEEEEC-CeEEEEECC-CCceEEEecCCCCC
Confidence 89999954322 122223455568899999999 56676665 799999994 45555555544433
Q ss_pred E------------------eEEEEecCCCEEEEEEcCC----------------------------------eEEEEECC
Q psy307 439 V------------------RDICFNNTGTNFISAGYDR----------------------------------YLKLWDTE 466 (1019)
Q Consensus 439 V------------------~sl~fspdg~~l~S~s~Dg----------------------------------~I~lWDl~ 466 (1019)
+ .+++|+|||++|++++.|+ .|++||+.
T Consensus 157 ~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~ 236 (723)
T 1xfd_A 157 VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN 236 (723)
T ss_dssp TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred ceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC
Confidence 3 7899999999999988653 79999999
Q ss_pred CCceEEEEec-------CCceEEEEEecCCCeeeeccC--------------CC-ceeee-CCCCCcc----cEEEEcCC
Q psy307 467 SGECISRFTS-------RKVAYCVKFHPDEDKQHLDIP--------------VD-MKYIA-DPTMHSM----PAVTSSPN 519 (1019)
Q Consensus 467 t~~~i~~~~~-------~~~v~~v~~~p~~~~~~~~~~--------------~~-~~~i~-~~~~~~i----~~v~~spd 519 (1019)
++++...+.. ...+..++|+|++..++.... .. ...+. ..+...+ ..++|+|+
T Consensus 237 ~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spd 316 (723)
T 1xfd_A 237 GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKD 316 (723)
T ss_dssp SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTT
T ss_pred CCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCC
Confidence 9886555654 346788999999975533110 00 01111 1111222 37899999
Q ss_pred CCEEEE--EecCC------eEEEEE-ccCcccccceeEEeccccccceEE-EEEcCCCCEEEEEeCC---CeEEEEeCCC
Q psy307 520 NKWLAC--QSMDN------KILIFS-ALNRFKLNRKKTFEGHMVAGYACS-LDFSPDMSYLISGDAD---GKCYIWDWKT 586 (1019)
Q Consensus 520 g~~Las--gs~Dg------~I~iwd-~~~~~~~~~~~~l~gh~~~~~V~~-v~fspdg~~Lasgs~D---G~I~IWDl~t 586 (1019)
|+.|+. +..++ .|.+|| ..++.. .....+..+. ..+.. ++|+|||++|+..+.+ +.++||++..
T Consensus 317 g~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~~~~~l~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 317 GRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN-DNIQSITSGD--WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp SCSEEEEEEECCSSSSCEEEEEEECSSCCSSS-CCCCBSCCSS--SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred CCeEEEEEecccCCCcceeEEEEEeccCCCCc-cceeEeecCC--eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 998775 44566 566777 333320 0012222221 22443 6999999999766555 7899999865
Q ss_pred Cc--eeeeeec---cCCCEEEEEEcCCCCcEEEEEeCCC
Q psy307 587 TK--LFKKWKA---HDGVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 587 ~~--~l~~l~~---h~~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
.. ....+.. |...+..++|+|++..++++++..+
T Consensus 394 ~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 432 (723)
T 1xfd_A 394 VGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPG 432 (723)
T ss_dssp STTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSS
T ss_pred CCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCC
Confidence 32 3444543 6677889999999965566655554
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.8e-17 Score=181.13 Aligned_cols=258 Identities=9% Similarity=-0.040 Sum_probs=183.8
Q ss_pred cEEEEeeCCCeEEEEecCCCcEEEEEecc-cCc-cEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC
Q psy307 349 HLLLSCSMDCRVKLWEVYKERRCVRTYYG-HRQ-AVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH 426 (1019)
Q Consensus 349 ~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g-h~~-~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~ 426 (1019)
.+|++++.++.|.+||+. .++.+..+.. +.. .+.+++|+|+|. .++++++.++.|.+||+. ++
T Consensus 2 ~~~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~-------------~l~v~~~~~~~v~~~d~~-~~ 66 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTE-KMAVDKVITIADAGPTPMVPMVAPGGR-------------IAYATVNKSESLVKIDLV-TG 66 (337)
T ss_dssp EEEEEEETTTEEEEEETT-TTEEEEEEECTTCTTCCCCEEECTTSS-------------EEEEEETTTTEEEEEETT-TC
T ss_pred cEEEEcCCCCeEEEEECC-CCcEEEEEEcCCCCCCccceEEcCCCC-------------EEEEEeCCCCeEEEEECC-CC
Confidence 478999999999999994 4566666543 222 478888988884 355667778999999994 44
Q ss_pred eEEEEEc-cc----cccEeEEEEecCCCEEEEEE------------cCCeEEEEECCCCceEEEEecCCceEEEEEecCC
Q psy307 427 RCVRTYY-GH----RQAVRDICFNNTGTNFISAG------------YDRYLKLWDTESGECISRFTSRKVAYCVKFHPDE 489 (1019)
Q Consensus 427 ~~~~~l~-~H----~~~V~sl~fspdg~~l~S~s------------~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~ 489 (1019)
+.+..+. ++ ...+.+++|+|+|+++++++ .++.|.+||+.+++.+..+.....+.+++|+|++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg 146 (337)
T 1pby_B 67 ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDG 146 (337)
T ss_dssp CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTS
T ss_pred CeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCC
Confidence 4554443 22 23677899999999988886 5799999999999998888877788899999998
Q ss_pred Ceeeec--------cCCCce-eeeCCCCCcccEEEEcCCCCEEEEEecCC------------------------eEEEEE
Q psy307 490 DKQHLD--------IPVDMK-YIADPTMHSMPAVTSSPNNKWLACQSMDN------------------------KILIFS 536 (1019)
Q Consensus 490 ~~~~~~--------~~~~~~-~i~~~~~~~i~~v~~spdg~~Lasgs~Dg------------------------~I~iwd 536 (1019)
..+.+. ...... ...... .....+.++|+|..++..+.++ .|.+||
T Consensus 147 ~~l~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 225 (337)
T 1pby_B 147 SKLYGLGRDLHVMDPEAGTLVEDKPIQ-SWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225 (337)
T ss_dssp SCEEEESSSEEEEETTTTEEEEEECST-TTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred CEEEEeCCeEEEEECCCCcEeeeeecc-ccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEe
Confidence 865543 111110 011111 1112337788888776554332 468999
Q ss_pred ccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEE
Q psy307 537 ALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 537 ~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~ 616 (1019)
+.++... ...+..+. ..+.+++|+|||++++++ ++.|++||+.+++.+..+..+ ..+.+++|+|++ .+++++
T Consensus 226 ~~~~~~~--~~~~~~~~--~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg-~~l~~~ 297 (337)
T 1pby_B 226 LETGEMA--MREVRIMD--VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDG-STVWLG 297 (337)
T ss_dssp TTTCCEE--EEEEEECS--SCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTS-CEEEEE
T ss_pred CCCCCce--EeecCCCC--CceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCC-CEEEEE
Confidence 9876432 22333333 457889999999999988 789999999999988887754 356899999998 477778
Q ss_pred eCCCcEEEEecccee
Q psy307 617 GWDAATAKVQDANIV 631 (1019)
Q Consensus 617 s~Dg~I~iwwd~~i~ 631 (1019)
+.++.|.+| +....
T Consensus 298 ~~~~~i~v~-d~~~~ 311 (337)
T 1pby_B 298 GALGDLAAY-DAETL 311 (337)
T ss_dssp SBSSEEEEE-ETTTC
T ss_pred cCCCcEEEE-ECcCC
Confidence 889998665 54433
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-17 Score=204.42 Aligned_cols=296 Identities=11% Similarity=0.067 Sum_probs=195.6
Q ss_pred CCeeeeCCCCCceeeecCCCCCCccCCccce-eeeccC-----------------CCCeEEEEEcCCCCcEEEEeeCCCe
Q psy307 298 GRSFLHPPHDVGTNLRSDTPPDRCFLPKTQV-HTWEGH-----------------TKGISAIRWFPKSAHLLLSCSMDCR 359 (1019)
Q Consensus 298 gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i-~~l~gH-----------------~~~V~~i~fspd~g~lLaSgs~Dg~ 359 (1019)
|..++....|+ | +|+...... + ..+..| ...|.+++|+|+ +.++++ .|+.
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~-------~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~--~~~~ 102 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKS-------AQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF--TQGG 102 (706)
T ss_dssp TTEEEEEETTE-E-EEEC--------------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE--ETTE
T ss_pred CCeEEEEeCCc-E-EEECCCCcE-------eeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE--ECCE
Confidence 66677766666 7 998753321 1 122222 257999999997 666655 3599
Q ss_pred EEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCC----CeEEEEEccc
Q psy307 360 VKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE----HRCVRTYYGH 435 (1019)
Q Consensus 360 I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~----~~~~~~l~~H 435 (1019)
|++||+.. +++ ..+..+...+.+++|+||| +.|++ +.|+.|++||+... +........+
T Consensus 103 i~~~d~~~-~~~-~~l~~~~~~~~~~~~SpdG--------------~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~ 165 (706)
T 2z3z_A 103 LVGFDMLA-RKV-TYLFDTNEETASLDFSPVG--------------DRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDG 165 (706)
T ss_dssp EEEEETTT-TEE-EEEECCTTCCTTCEECTTS--------------SEEEE-EETTEEEEEECBCTTSCCCCCEESCSCC
T ss_pred EEEEECCC-Cce-EEccCCcccccCCcCCCCC--------------CEEEE-EECCeEEEEecCcccccCCCcEEeccCC
Confidence 99999944 443 3445567788999999999 46666 36799999999541 4444444444
Q ss_pred ccc--------------EeEEEEecCCCEEEEEE---------------------------------cCCeEEEEECCCC
Q psy307 436 RQA--------------VRDICFNNTGTNFISAG---------------------------------YDRYLKLWDTESG 468 (1019)
Q Consensus 436 ~~~--------------V~sl~fspdg~~l~S~s---------------------------------~Dg~I~lWDl~t~ 468 (1019)
... +.+++|+|||++|++++ .+..|.+||+.++
T Consensus 166 ~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~ 245 (706)
T 2z3z_A 166 TETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG 245 (706)
T ss_dssp BTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT
T ss_pred CCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC
Confidence 333 48899999999999988 4478999999998
Q ss_pred ceEEEEe---cCCceEEEEEecCCCeeeeccC---------------CC--ceeeeC-CCCC---cccEEEEcC--CCCE
Q psy307 469 ECISRFT---SRKVAYCVKFHPDEDKQHLDIP---------------VD--MKYIAD-PTMH---SMPAVTSSP--NNKW 522 (1019)
Q Consensus 469 ~~i~~~~---~~~~v~~v~~~p~~~~~~~~~~---------------~~--~~~i~~-~~~~---~i~~v~~sp--dg~~ 522 (1019)
+...... ....+.+++|+|++..+++... .. ...+.. .... .+..++|+| +|++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~ 325 (706)
T 2z3z_A 246 KTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQF 325 (706)
T ss_dssp EEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEE
T ss_pred ceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEE
Confidence 8655442 2356789999999986655211 11 111111 1111 235689999 9999
Q ss_pred EEEEecCCeEEEEEcc-CcccccceeEEeccccccceEE-EEEcCCCCEEEEEeC-CC----eEEEEeCCCCceeeeeec
Q psy307 523 LACQSMDNKILIFSAL-NRFKLNRKKTFEGHMVAGYACS-LDFSPDMSYLISGDA-DG----KCYIWDWKTTKLFKKWKA 595 (1019)
Q Consensus 523 Lasgs~Dg~I~iwd~~-~~~~~~~~~~l~gh~~~~~V~~-v~fspdg~~Lasgs~-DG----~I~IWDl~t~~~l~~l~~ 595 (1019)
+++++.||.+++|.+. ++ .....+..+. ..+.+ ++|+|||+.|+.++. ++ .|+.||+.+++ ...+.
T Consensus 326 l~~~~~~g~~~l~~~~~~~---~~~~~l~~~~--~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~- 398 (706)
T 2z3z_A 326 IWQSRRDGWNHLYLYDTTG---RLIRQVTKGE--WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT- 398 (706)
T ss_dssp EEEECTTSSCEEEEEETTS---CEEEECCCSS--SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-
T ss_pred EEEEccCCccEEEEEECCC---CEEEecCCCC--eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-
Confidence 9999999999999876 33 2234454543 44665 799999998766554 44 67778887776 34443
Q ss_pred cCCCEEEEEEcCCCCcEEEEEeCC---CcEEEEeccce
Q psy307 596 HDGVCISTLWHPHEPSKVVTAGWD---AATAKVQDANI 630 (1019)
Q Consensus 596 h~~~V~sl~~sp~~~~~l~s~s~D---g~I~iwwd~~i 630 (1019)
|...+.+++|+|++..++++++.+ +.|.+ |+...
T Consensus 399 ~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l-~d~~~ 435 (706)
T 2z3z_A 399 PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTV-TNIGK 435 (706)
T ss_dssp CSSSEEEEEECTTSSEEEEEEECSSCSCEEEE-EESSS
T ss_pred CCCceEEEEECCCCCEEEEEecCCCCCcEEEE-EECCC
Confidence 666799999999995444444444 34644 45443
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-16 Score=176.18 Aligned_cols=267 Identities=8% Similarity=0.029 Sum_probs=180.4
Q ss_pred CCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec
Q psy307 297 QGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY 376 (1019)
Q Consensus 297 ~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~ 376 (1019)
.++.+++...++.|.+|+... .+.+..+..+...+ +++|+|++..+++++..++.|.+||+.........+.
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~-------~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~ 80 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDT-------LEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ 80 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTT-------CCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE
T ss_pred CCEEEEEecCCCeEEEEeCcc-------cceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc
Confidence 345588888899999998753 24456666666777 9999997444555555699999999954433266677
Q ss_pred ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC---cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE
Q psy307 377 GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC---RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS 453 (1019)
Q Consensus 377 gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg---~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S 453 (1019)
.+..++.+++|+|+| ++|+++..++ .|.+||+ ..+..+..+..+ ....+++|+|+|+++++
T Consensus 81 ~~~~~~~~~~~s~dg--------------~~l~~~~~~~~~~~i~v~d~-~~~~~~~~~~~~-~~~~~~~~spdg~~l~~ 144 (331)
T 3u4y_A 81 EGQSSMADVDITPDD--------------QFAVTVTGLNHPFNMQSYSF-LKNKFISTIPIP-YDAVGIAISPNGNGLIL 144 (331)
T ss_dssp ECSSCCCCEEECTTS--------------SEEEECCCSSSSCEEEEEET-TTTEEEEEEECC-TTEEEEEECTTSSCEEE
T ss_pred cCCCCccceEECCCC--------------CEEEEecCCCCcccEEEEEC-CCCCeEEEEECC-CCccceEECCCCCEEEE
Confidence 676666669999998 5666555443 8999999 555666665543 44689999999986555
Q ss_pred E-EcCCe-EEEEECCCCceE-----EEEecCCceEEEEEecCCCeeeecc-CCCceeeeC-------------CCCCccc
Q psy307 454 A-GYDRY-LKLWDTESGECI-----SRFTSRKVAYCVKFHPDEDKQHLDI-PVDMKYIAD-------------PTMHSMP 512 (1019)
Q Consensus 454 ~-s~Dg~-I~lWDl~t~~~i-----~~~~~~~~v~~v~~~p~~~~~~~~~-~~~~~~i~~-------------~~~~~i~ 512 (1019)
+ ..++. |.+|++.....+ ..+.....+..++|+|++....+.. ......+.+ .....+.
T Consensus 145 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~ 224 (331)
T 3u4y_A 145 IDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPG 224 (331)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCC
T ss_pred EecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCc
Confidence 4 55588 999998764432 2334456788999999998554411 111111111 1234557
Q ss_pred EEEEcCCCCEEEEEe-cCCeEEEEEccCcccccceeEEecc----c-cccceEEEEEcCCCCEEEEEe-CCCeEEEEeCC
Q psy307 513 AVTSSPNNKWLACQS-MDNKILIFSALNRFKLNRKKTFEGH----M-VAGYACSLDFSPDMSYLISGD-ADGKCYIWDWK 585 (1019)
Q Consensus 513 ~v~~spdg~~Lasgs-~Dg~I~iwd~~~~~~~~~~~~l~gh----~-~~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl~ 585 (1019)
.++|+|+|+++++++ .++.|.+||+.++.. ..+..+..+ . ....+..++|+|||++|++++ .++.|.+||+.
T Consensus 225 ~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 225 TIVVSRDGSTVYVLTESTVDVFNFNQLSGTL-SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp CEEECTTSSEEEEECSSEEEEEEEETTTTEE-EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred eEEECCCCCEEEEEEcCCCEEEEEECCCCce-eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 899999999776655 578899999987633 112232222 1 001124589999999886655 46699999997
Q ss_pred CCc
Q psy307 586 TTK 588 (1019)
Q Consensus 586 t~~ 588 (1019)
+..
T Consensus 304 ~~~ 306 (331)
T 3u4y_A 304 GKV 306 (331)
T ss_dssp SCE
T ss_pred CCc
Confidence 654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.9e-16 Score=175.30 Aligned_cols=246 Identities=11% Similarity=0.104 Sum_probs=178.0
Q ss_pred CCCCeEEEEEcCCCCcEEEEeeC-------CCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCc
Q psy307 334 HTKGISAIRWFPKSAHLLLSCSM-------DCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAH 406 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs~-------Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~ 406 (1019)
....+..++|+|+ +..+++++. ++.|.+||.. +++.+..+.. ...+..++|+|+|. .
T Consensus 39 ~~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~v~~~d~~-~~~~~~~~~~-~~~~~~~~~s~dg~-------------~ 102 (353)
T 3vgz_A 39 VGKGAYEMAYSQQ-ENALWLATSQSRKLDKGGVVYRLDPV-TLEVTQAIHN-DLKPFGATINNTTQ-------------T 102 (353)
T ss_dssp EESSEEEEEEETT-TTEEEEEECCCTTTEESEEEEEECTT-TCCEEEEEEE-SSCCCSEEEETTTT-------------E
T ss_pred hccCccceEECCC-CCEEEEEcCCCcCCCCCccEEEEcCC-CCeEEEEEec-CCCcceEEECCCCC-------------E
Confidence 3457889999997 555555552 6799999994 4555555543 33467788888873 4
Q ss_pred EEEEEeCCCcEEEEEccCCCeEEEEEccccc---------cEeEEEEecCCCEEEEEE--cCCeEEEEECCCCceEEEEe
Q psy307 407 LLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQ---------AVRDICFNNTGTNFISAG--YDRYLKLWDTESGECISRFT 475 (1019)
Q Consensus 407 ~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~---------~V~sl~fspdg~~l~S~s--~Dg~I~lWDl~t~~~i~~~~ 475 (1019)
+++++..++.|.+||+ .+++.+..+..+.. .+.+++|+|+|+++++++ .++.|.+||+.+++.+..+.
T Consensus 103 l~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~ 181 (353)
T 3vgz_A 103 LWFGNTVNSAVTAIDA-KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ 181 (353)
T ss_dssp EEEEETTTTEEEEEET-TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC
T ss_pred EEEEecCCCEEEEEeC-CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec
Confidence 5666677899999999 45556666655432 278899999999877776 47899999999988776654
Q ss_pred cCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEecc--c
Q psy307 476 SRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGH--M 553 (1019)
Q Consensus 476 ~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh--~ 553 (1019)
.. ...+..++++|+|+++++++.++.|.+||+.++... ..+... .
T Consensus 182 ~~------------------------------~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~ 228 (353)
T 3vgz_A 182 NT------------------------------GKMSTGLALDSEGKRLYTTNADGELITIDTADNKIL---SRKKLLDDG 228 (353)
T ss_dssp CC------------------------------CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEE---EEEECCCSS
T ss_pred CC------------------------------CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEE---EEEEcCCCC
Confidence 21 122456778899999999999999999999876433 333221 1
Q ss_pred cccceEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceee
Q psy307 554 VAGYACSLDFSPDMSYLISGDA-DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVK 632 (1019)
Q Consensus 554 ~~~~V~~v~fspdg~~Lasgs~-DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~k 632 (1019)
....+.+++|+|+|+++++++. ++.|.+||+.+++.+..+..+.. .+++|+|++..++++...++.|.+| +....+
T Consensus 229 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~-d~~~~~ 305 (353)
T 3vgz_A 229 KEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVI-DAKSYK 305 (353)
T ss_dssp SCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEE-ETTTTE
T ss_pred CCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEE-ECCCCe
Confidence 1245788999999998776665 48999999999999888876543 5799999996566666678888655 544333
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-16 Score=177.63 Aligned_cols=270 Identities=11% Similarity=0.042 Sum_probs=184.7
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCC-CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHT-KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC 371 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~-~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~ 371 (1019)
.....++.++++..++.|.+|+... .+.+.++..+. ..+..++|+|++..++++++.++.|.+||+. +++.
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~-------~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~-t~~~ 77 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVAS-------DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD-TCKN 77 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTT-------TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT-TTEE
T ss_pred cccCCCEEEEEeCCCCeEEEEECCC-------CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC-CCcE
Confidence 3456788899999999999998753 24455665443 3688999999754566677789999999994 4555
Q ss_pred EEEecc-c-----CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC------------CcEEEEEccCCC--eEEEE
Q psy307 372 VRTYYG-H-----RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD------------CRVKLWEVYKEH--RCVRT 431 (1019)
Q Consensus 372 ~~~~~g-h-----~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D------------g~I~IWDl~~~~--~~~~~ 431 (1019)
+..+.. + ...+.+++|+|+| ++|++++.+ +.|.+||+.... ..+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~spdg--------------~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 143 (349)
T 1jmx_B 78 TFHANLSSVPGEVGRSMYSFAISPDG--------------KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT 143 (349)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTTS--------------SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE
T ss_pred EEEEEcccccccccccccceEECCCC--------------CEEEEEcccccccccccccCCCeEEEEECCCccccceeee
Confidence 555543 2 2337888899988 566666654 899999995422 22233
Q ss_pred EccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCC-------------------------ceEEEEEe
Q psy307 432 YYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRK-------------------------VAYCVKFH 486 (1019)
Q Consensus 432 l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~-------------------------~v~~v~~~ 486 (1019)
+. +...+.+++|+|+|+ +++++ +.|.+||+.+++.+..+.... .+.++.++
T Consensus 144 ~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (349)
T 1jmx_B 144 FP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 219 (349)
T ss_dssp EE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC
T ss_pred cc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeec
Confidence 33 334688999999999 55553 449999999999888776543 34556666
Q ss_pred cCCCee-----------eeccCCCce--eeeCCCCCcccEEEEcC-CCCEEEEEecCCeEEEEEccCcccccceeEEecc
Q psy307 487 PDEDKQ-----------HLDIPVDMK--YIADPTMHSMPAVTSSP-NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGH 552 (1019)
Q Consensus 487 p~~~~~-----------~~~~~~~~~--~i~~~~~~~i~~v~~sp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh 552 (1019)
+++... .++...... .........+..++++| +|++++++ ++.|.+||+.++.. ...+...
T Consensus 220 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~---~~~~~~~ 294 (349)
T 1jmx_B 220 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKL---IKAANLD 294 (349)
T ss_dssp -------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEE---EEEEECS
T ss_pred CCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeE---EEEEcCC
Confidence 543211 001110000 00111334567889999 99999888 89999999987632 2333322
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc
Q psy307 553 MVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH 596 (1019)
Q Consensus 553 ~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h 596 (1019)
..+.+++|+|+|++|++++.++.|.+||+.+++.+..++.+
T Consensus 295 ---~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 295 ---HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp ---SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred ---CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 33668999999999988888999999999999988887654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-17 Score=204.71 Aligned_cols=259 Identities=7% Similarity=-0.005 Sum_probs=170.3
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCc---cEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQ---AVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM 413 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~---~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~ 413 (1019)
.+.+++|+|+ |+++++ +.||+|++||+. ++++...+.+|.. .|.+++||||| ++|++++.
T Consensus 18 ~~~~~~~spd-g~~~~~-~~dg~i~~~d~~-~g~~~~~~~~~~~~~~~v~~~~~SpDg--------------~~l~~~~~ 80 (723)
T 1xfd_A 18 HDPEAKWISD-TEFIYR-EQKGTVRLWNVE-TNTSTVLIEGKKIESLRAIRYEISPDR--------------EYALFSYN 80 (723)
T ss_dssp CCCCCCBSSS-SCBCCC-CSSSCEEEBCGG-GCCCEEEECTTTTTTTTCSEEEECTTS--------------SEEEEEES
T ss_pred cccccEEcCC-CcEEEE-eCCCCEEEEECC-CCcEEEEeccccccccccceEEECCCC--------------CEEEEEec
Confidence 4677899997 566666 789999999994 4455666776665 49999999999 56777765
Q ss_pred C---------CcEEEEEccCCCe-EEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecC-Cce--
Q psy307 414 D---------CRVKLWEVYKEHR-CVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSR-KVA-- 480 (1019)
Q Consensus 414 D---------g~I~IWDl~~~~~-~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~-~~v-- 480 (1019)
+ +.|.+||+..... .+....+|...+.+++|||||+.|++++. +.|++||+.+++.......+ ..+
T Consensus 81 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~ 159 (723)
T 1xfd_A 81 VEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIY 159 (723)
T ss_dssp CCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEE
T ss_pred CccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceE
Confidence 4 7888999954432 12222345556889999999999999886 89999999998876655432 212
Q ss_pred ----------------EEEEEecCCCeeeeccCC----Cceee---eCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEc
Q psy307 481 ----------------YCVKFHPDEDKQHLDIPV----DMKYI---ADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSA 537 (1019)
Q Consensus 481 ----------------~~v~~~p~~~~~~~~~~~----~~~~i---~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~ 537 (1019)
.++.|+|++..+++.... ....+ .......+..+.++++|.. ..+..|++||+
T Consensus 160 ~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~----~~~~~l~~~d~ 235 (723)
T 1xfd_A 160 NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE----NPSISLHVIGL 235 (723)
T ss_dssp EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC----CCEEEEEEEES
T ss_pred CcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCC----CCeeEEEEEEC
Confidence 456666666655442110 00000 0001122444555555432 22348999999
Q ss_pred cCcccccceeEEeccc----cccceEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCceeeeeec-cCCCEE----EEE
Q psy307 538 LNRFKLNRKKTFEGHM----VAGYACSLDFSPDMSYLISGDA----DGKCYIWDWKTTKLFKKWKA-HDGVCI----STL 604 (1019)
Q Consensus 538 ~~~~~~~~~~~l~gh~----~~~~V~~v~fspdg~~Lasgs~----DG~I~IWDl~t~~~l~~l~~-h~~~V~----sl~ 604 (1019)
.++.. ...+..+. ....+.+++|||||++|++.+. ++.|++||+.+++....+.. |.+.+. +++
T Consensus 236 ~~~~~---~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 312 (723)
T 1xfd_A 236 NGPTH---DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPV 312 (723)
T ss_dssp SSSCC---CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCE
T ss_pred CCCce---eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCce
Confidence 87632 23333321 1256889999999999877653 35799999999987776654 334443 789
Q ss_pred EcCCCCcEEEE-EeCCC
Q psy307 605 WHPHEPSKVVT-AGWDA 620 (1019)
Q Consensus 605 ~sp~~~~~l~s-~s~Dg 620 (1019)
|+|+|..++++ +..|+
T Consensus 313 ~spdg~~l~~~~~~~~~ 329 (723)
T 1xfd_A 313 FSKDGRKFFFIRAIPQG 329 (723)
T ss_dssp ECTTSCSEEEEEEECCS
T ss_pred EcCCCCeEEEEEecccC
Confidence 99999655544 55666
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.74 E-value=7e-17 Score=188.78 Aligned_cols=202 Identities=12% Similarity=0.075 Sum_probs=147.2
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC----------cEEEE----EecccCccEeEEEEcCCCCceeEEEeec
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE----------RRCVR----TYYGHRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~----------~~~~~----~~~gh~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
..++.++++++ +.++++|+.|| |+||+...- ..... ....|...|.+++|+|+|
T Consensus 37 ~~~n~lavs~~-~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg---------- 104 (434)
T 2oit_A 37 ERSSLLAVSNK-YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN---------- 104 (434)
T ss_dssp SCCBCEEEETT-TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS----------
T ss_pred CCccEEEEecC-CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC----------
Confidence 36788999996 67888888888 899875210 01100 112345678888888887
Q ss_pred CCCCcEEE----EEeCCCcEEEEEccCC-----C-----eEEEEEccccccEeEEEEecC-CCEEEEEEcCCeEEEEECC
Q psy307 402 PKSAHLLL----SCSMDCRVKLWEVYKE-----H-----RCVRTYYGHRQAVRDICFNNT-GTNFISAGYDRYLKLWDTE 466 (1019)
Q Consensus 402 p~~~~~L~----sgs~Dg~I~IWDl~~~-----~-----~~~~~l~~H~~~V~sl~fspd-g~~l~S~s~Dg~I~lWDl~ 466 (1019)
++|+ +|+.|+.|+|||+... . ..+..+.+|...|.+++|+|+ +.+|++++.||+|++||++
T Consensus 105 ----~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~ 180 (434)
T 2oit_A 105 ----LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT 180 (434)
T ss_dssp ----CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEES
T ss_pred ----CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcC
Confidence 5666 7889999999998543 1 135667789999999999998 7899999999999999999
Q ss_pred CCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccce
Q psy307 467 SGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRK 546 (1019)
Q Consensus 467 t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~ 546 (1019)
++..+..... +...+.+++|+|+|++|++|+.||.|++||++ +. ..
T Consensus 181 ~~~~~~~~~~------------------------------~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~---~~ 226 (434)
T 2oit_A 181 ETVKVCATLP------------------------------STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ---EK 226 (434)
T ss_dssp SSEEEEEEEC------------------------------GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC---EE
T ss_pred CCcceeeccC------------------------------CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc---cc
Confidence 8754332221 23457788889999999999999999999997 21 22
Q ss_pred eEEecccc-----ccceEEEEEcCCCCEEEEE-eCCC------eEEEEeCCCC
Q psy307 547 KTFEGHMV-----AGYACSLDFSPDMSYLISG-DADG------KCYIWDWKTT 587 (1019)
Q Consensus 547 ~~l~gh~~-----~~~V~~v~fspdg~~Lasg-s~DG------~I~IWDl~t~ 587 (1019)
..+..|.. ...+.+++|++++.++++. +.|| .+++|++.+.
T Consensus 227 ~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 227 KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 33333321 1368999999999887553 3443 3899999765
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-15 Score=170.31 Aligned_cols=278 Identities=9% Similarity=0.049 Sum_probs=175.2
Q ss_pred CCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCC----CeEEEEecCCC-cE--EEEEecc
Q psy307 305 PHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMD----CRVKLWEVYKE-RR--CVRTYYG 377 (1019)
Q Consensus 305 ~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~D----g~I~IWdl~~~-~~--~~~~~~g 377 (1019)
+.++.|.+|........ .+.+..+ |...+..++|+|+ +++|++++.+ +.|.+|++... +. .+.....
T Consensus 24 ~~~~~i~~~~~d~~~g~---~~~~~~~--~~~~p~~l~~spd-g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~ 97 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGE---SLPLSDA--EVANPSYLIPSAD-GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKT 97 (361)
T ss_dssp SSCCEEEEEEEETTTCC---EEEEEEE--ECSCCCSEEECTT-SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEEC
T ss_pred CCCCCEEEEEEeCCCCC---EEEeecc--cCCCCceEEECCC-CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEecc
Confidence 34678888876532211 1223333 7778889999996 7788888775 89999998543 33 3333444
Q ss_pred cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe-CCCcEEEEEccCCCeEE---E--EEcc--------ccccEeEEE
Q psy307 378 HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS-MDCRVKLWEVYKEHRCV---R--TYYG--------HRQAVRDIC 443 (1019)
Q Consensus 378 h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs-~Dg~I~IWDl~~~~~~~---~--~l~~--------H~~~V~sl~ 443 (1019)
+......+++ ++ ++|++++ .++.|.+|++...+... . ...+ +...+.+++
T Consensus 98 ~~~~p~~~~~--dg--------------~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 161 (361)
T 3scy_A 98 MGADPCYLTT--NG--------------KNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVR 161 (361)
T ss_dssp SSSCEEEEEE--CS--------------SEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEE
T ss_pred CCCCcEEEEE--CC--------------CEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEE
Confidence 5555666666 55 4455554 68999999996443221 1 1111 223467899
Q ss_pred EecCCCEEEEEEc-CCeEEEEECCCCce------EEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEE
Q psy307 444 FNNTGTNFISAGY-DRYLKLWDTESGEC------ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTS 516 (1019)
Q Consensus 444 fspdg~~l~S~s~-Dg~I~lWDl~t~~~------i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~ 516 (1019)
|+|+|+++++++. ++.|.+|++..... +.... .. .............++|
T Consensus 162 ~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~---~~--------------------~~~~~~~~~~~~~~~~ 218 (361)
T 3scy_A 162 ITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG---TP--------------------EAFKVAPGSGPRHLIF 218 (361)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE---EE--------------------EEEECCTTCCEEEEEE
T ss_pred ECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc---cc--------------------cceecCCCCCCeEEEE
Confidence 9999997766654 78999998875431 11000 00 0001111233457889
Q ss_pred cCCCCEEEEEe-cCCeEEEEEccCcccccceeEEeccc-cccceEEEEEcCCCCEEEEEeC--CCeEEEEeCC--CCc--
Q psy307 517 SPNNKWLACQS-MDNKILIFSALNRFKLNRKKTFEGHM-VAGYACSLDFSPDMSYLISGDA--DGKCYIWDWK--TTK-- 588 (1019)
Q Consensus 517 spdg~~Lasgs-~Dg~I~iwd~~~~~~~~~~~~l~gh~-~~~~V~~v~fspdg~~Lasgs~--DG~I~IWDl~--t~~-- 588 (1019)
+|+|+++++++ .++.|.+|++.++. +.....+.... ....+..++|+|||++|++++. ++.|.+|++. +++
T Consensus 219 spdg~~l~v~~~~~~~v~v~~~~~g~-~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~ 297 (361)
T 3scy_A 219 NSDGKFAYLINEIGGTVIAFRYADGM-LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLT 297 (361)
T ss_dssp CTTSSEEEEEETTTCEEEEEEEETTE-EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEE
T ss_pred cCCCCEEEEEcCCCCeEEEEEecCCc-eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE
Confidence 99999887777 68999999998542 22223332221 1134678999999999876665 4899999985 454
Q ss_pred eeeeeeccCCCEEEEEEcCCCCcEEEEEe-CCCcEEEE-eccce
Q psy307 589 LFKKWKAHDGVCISTLWHPHEPSKVVTAG-WDAATAKV-QDANI 630 (1019)
Q Consensus 589 ~l~~l~~h~~~V~sl~~sp~~~~~l~s~s-~Dg~I~iw-wd~~i 630 (1019)
.+..+.. ...+.+++|+|++. +|++++ .++.|.+| ++...
T Consensus 298 ~~~~~~~-g~~~~~~~~spdg~-~l~~~~~~~~~v~v~~~d~~~ 339 (361)
T 3scy_A 298 KVGYQLT-GIHPRNFIITPNGK-YLLVACRDTNVIQIFERDQAT 339 (361)
T ss_dssp EEEEEEC-SSCCCEEEECTTSC-EEEEEETTTTEEEEEEECTTT
T ss_pred EeeEecC-CCCCceEEECCCCC-EEEEEECCCCCEEEEEEECCC
Confidence 4444544 45678999999995 555555 67777665 44433
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=9.2e-16 Score=171.16 Aligned_cols=230 Identities=10% Similarity=0.157 Sum_probs=157.5
Q ss_pred cEEEEeeCCCeEEEEecCCCc--EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC-CcEEEEEccC-
Q psy307 349 HLLLSCSMDCRVKLWEVYKER--RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD-CRVKLWEVYK- 424 (1019)
Q Consensus 349 ~lLaSgs~Dg~I~IWdl~~~~--~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D-g~I~IWDl~~- 424 (1019)
.++++++.|+.|++|++...+ ..+.. ..|...+.+++|+|+| ++|++++.+ +.|.+|++..
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg--------------~~l~~~~~~~~~v~~~~~~~~ 70 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDK--------------RYLYVGVRPEFRVLAYRIAPD 70 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTS--------------SEEEEEETTTTEEEEEEECTT
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCC--------------CEEEEeecCCCeEEEEEecCC
Confidence 345555889999999995333 33333 4577788999999998 567777776 9999999952
Q ss_pred CC--eEEEEEccccccEeEEEEecCCCEEEEEEc-CCeEEEEECCCCc---eEEEEecCCceEEEEEecCCCeeeeccCC
Q psy307 425 EH--RCVRTYYGHRQAVRDICFNNTGTNFISAGY-DRYLKLWDTESGE---CISRFTSRKVAYCVKFHPDEDKQHLDIPV 498 (1019)
Q Consensus 425 ~~--~~~~~l~~H~~~V~sl~fspdg~~l~S~s~-Dg~I~lWDl~t~~---~i~~~~~~~~v~~v~~~p~~~~~~~~~~~ 498 (1019)
.+ ..+..+..+. .+.+++|+|+|+++++++. ++.|.+||+..+. .+..+..
T Consensus 71 ~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---------------------- 127 (343)
T 1ri6_A 71 DGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG---------------------- 127 (343)
T ss_dssp TCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC----------------------
T ss_pred CCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC----------------------
Confidence 22 2344444444 8899999999998877775 8899999985332 2222211
Q ss_pred CceeeeCCCCCcccEEEEcCCCCEEEEEe-cCCeEEEEEccCccccccee--EEeccccccceEEEEEcCCCCEEEEEe-
Q psy307 499 DMKYIADPTMHSMPAVTSSPNNKWLACQS-MDNKILIFSALNRFKLNRKK--TFEGHMVAGYACSLDFSPDMSYLISGD- 574 (1019)
Q Consensus 499 ~~~~i~~~~~~~i~~v~~spdg~~Lasgs-~Dg~I~iwd~~~~~~~~~~~--~l~gh~~~~~V~~v~fspdg~~Lasgs- 574 (1019)
...+.+++|+|+|+++++++ .++.|.+||+.+........ .+..+. ...+..++|+|+|+++++++
T Consensus 128 ---------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pdg~~l~~~~~ 197 (343)
T 1ri6_A 128 ---------LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE-GAGPRHMVFHPNEQYAYCVNE 197 (343)
T ss_dssp ---------CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST-TCCEEEEEECTTSSEEEEEET
T ss_pred ---------CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC-CCCcceEEECCCCCEEEEEeC
Confidence 12366788999999888877 89999999998622222222 222222 24578899999999776554
Q ss_pred CCCeEEEEeCC--CCce--eeeee----cc--CCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 575 ADGKCYIWDWK--TTKL--FKKWK----AH--DGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 575 ~DG~I~IWDl~--t~~~--l~~l~----~h--~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
.++.|.+||+. +++. ...+. ++ ...+.+++|+|++..++++++.|+.|.+|.
T Consensus 198 ~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d 259 (343)
T 1ri6_A 198 LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFS 259 (343)
T ss_dssp TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEE
Confidence 78999999995 3433 22222 11 235778999999965555676888886653
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-16 Score=191.19 Aligned_cols=261 Identities=12% Similarity=0.061 Sum_probs=182.3
Q ss_pred CCCCCCeeeeCCC-CCceeeecCCCCCCccCCccceeeeccCC-CCeEEEEEcCCCCcEEEEeeC---CCeEEEEecCC-
Q psy307 294 TDYQGRSFLHPPH-DVGTNLRSDTPPDRCFLPKTQVHTWEGHT-KGISAIRWFPKSAHLLLSCSM---DCRVKLWEVYK- 367 (1019)
Q Consensus 294 ~~~~gr~~~~~~~-D~~v~lw~~~~~~~~~lp~~~i~~l~gH~-~~V~~i~fspd~g~lLaSgs~---Dg~I~IWdl~~- 367 (1019)
++++|+.++.++. |+.++||.... .....+..|. ..|.+++|+|+ .++++++. +...+||.+..
T Consensus 29 ~~~DG~~la~~s~~~g~~~lw~~~~--------g~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 29 GVVDGDKLLVVGFSEGSVNAYLYDG--------GETVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp EEETTTEEEEEEEETTEEEEEEEET--------TEEEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEETT
T ss_pred cCCCCCeEEEEEccCCceeEEEEcC--------CCcEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEecc
Confidence 5678999998876 99999998532 2334555565 68999999996 78887775 56667766533
Q ss_pred -CcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec
Q psy307 368 -ERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN 446 (1019)
Q Consensus 368 -~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp 446 (1019)
.+... .+..+ ..+...+|+|+|. ..+++++.++.+.+||+ .++.+......+. .+++|+|
T Consensus 99 ~~g~~~-~l~~~-~~~~~~~~s~dg~-------------~~~~~s~~~~~~~l~d~-~~g~~~~l~~~~~---~~~~~sp 159 (582)
T 3o4h_A 99 RPGEEQ-RLEAV-KPMRILSGVDTGE-------------AVVFTGATEDRVALYAL-DGGGLRELARLPG---FGFVSDI 159 (582)
T ss_dssp STTCCE-ECTTS-CSBEEEEEEECSS-------------CEEEEEECSSCEEEEEE-ETTEEEEEEEESS---CEEEEEE
T ss_pred CCCccc-cccCC-CCceeeeeCCCCC-------------eEEEEecCCCCceEEEc-cCCcEEEeecCCC---ceEEECC
Confidence 33322 22222 2234557777764 44455555555569999 4455444443333 7889999
Q ss_pred CCCEEEEEEcC----CeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCE
Q psy307 447 TGTNFISAGYD----RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKW 522 (1019)
Q Consensus 447 dg~~l~S~s~D----g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~ 522 (1019)
||++|++++.| +.|++||+.+++... +.. +...+..++|+|||++
T Consensus 160 DG~~la~~~~~~~~~~~i~~~d~~~g~~~~-l~~------------------------------~~~~~~~~~~SpDG~~ 208 (582)
T 3o4h_A 160 RGDLIAGLGFFGGGRVSLFTSNLSSGGLRV-FDS------------------------------GEGSFSSASISPGMKV 208 (582)
T ss_dssp ETTEEEEEEEEETTEEEEEEEETTTCCCEE-ECC------------------------------SSCEEEEEEECTTSCE
T ss_pred CCCEEEEEEEcCCCCeEEEEEcCCCCCceE-eec------------------------------CCCccccceECCCCCE
Confidence 99999988887 789999999887542 221 1233456788999999
Q ss_pred EEEEecCC--eEEEEEccCcccccceeEEeccccccceEEEE--------EcCCCCEEEEEeCCCeEEEEeCCCCceeee
Q psy307 523 LACQSMDN--KILIFSALNRFKLNRKKTFEGHMVAGYACSLD--------FSPDMSYLISGDADGKCYIWDWKTTKLFKK 592 (1019)
Q Consensus 523 Lasgs~Dg--~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~--------fspdg~~Lasgs~DG~I~IWDl~t~~~l~~ 592 (1019)
|+++..++ .|++||+.++.. . .+.+|. ..+..++ |+|||.++++++.||+++||++ ++...
T Consensus 209 l~~~~~~~~~~i~~~d~~~~~~---~-~~~~~~--~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~- 279 (582)
T 3o4h_A 209 TAGLETAREARLVTVDPRDGSV---E-DLELPS--KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE- 279 (582)
T ss_dssp EEEEECSSCEEEEEECTTTCCE---E-ECCCSC--SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC-
T ss_pred EEEccCCCeeEEEEEcCCCCcE---E-EccCCC--cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec-
Confidence 99888888 899999987632 2 444443 3344455 9999999999999999999999 66554
Q ss_pred eeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEec
Q psy307 593 WKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQD 627 (1019)
Q Consensus 593 l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd 627 (1019)
.+.+.|.+++|+ ++ .++++++.+.+-..+|.
T Consensus 280 --~~~~~v~~~~~s-dg-~~l~~~s~~~~p~~l~~ 310 (582)
T 3o4h_A 280 --APQGNHGRVVLW-RG-KLVTSHTSLSTPPRIVS 310 (582)
T ss_dssp --CCSSEEEEEEEE-TT-EEEEEEEETTEEEEEEE
T ss_pred --cCCCceEEEEec-CC-EEEEEEcCCCCCCeEEE
Confidence 344678899999 76 68888888876444443
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.5e-16 Score=168.35 Aligned_cols=213 Identities=15% Similarity=0.153 Sum_probs=155.1
Q ss_pred EeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEE
Q psy307 353 SCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY 432 (1019)
Q Consensus 353 Sgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l 432 (1019)
+++.|+.|++||+.. ++. ..+..|...|.+++|+|+| ++|++++ ++.|++||+...+......
T Consensus 17 ~~~~~~~i~~~d~~~-~~~-~~~~~~~~~v~~~~~spdg--------------~~l~~~~-~~~i~~~d~~~~~~~~~~~ 79 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRT-RKM-RVVWQTPELFEAPNWSPDG--------------KYLLLNS-EGLLYRLSLAGDPSPEKVD 79 (297)
T ss_dssp -CCCCEEEEEEETTT-TEE-EEEEEESSCCEEEEECTTS--------------SEEEEEE-TTEEEEEESSSCCSCEECC
T ss_pred CCCcceeEEEEeCCC-Cce-eeeccCCcceEeeEECCCC--------------CEEEEEc-CCeEEEEeCCCCCCceEec
Confidence 457899999999944 443 3566788999999999999 5777766 8899999995425555555
Q ss_pred ccc-cccEeEEEEecCCCEEEEEEc--CCeEEEE--ECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCC
Q psy307 433 YGH-RQAVRDICFNNTGTNFISAGY--DRYLKLW--DTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPT 507 (1019)
Q Consensus 433 ~~H-~~~V~sl~fspdg~~l~S~s~--Dg~I~lW--Dl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~ 507 (1019)
.+| ...|.+++|+|+|++|++++. ++.+.|| |+.++.. ..+...
T Consensus 80 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~------------------------------ 128 (297)
T 2ojh_A 80 TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKN------------------------------ 128 (297)
T ss_dssp CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSS------------------------------
T ss_pred cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeecC------------------------------
Confidence 565 478899999999999999993 3455555 4444432 111111
Q ss_pred CCcccEEEEcCCCCEEE-EEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe-CCCeEEEEeCC
Q psy307 508 MHSMPAVTSSPNNKWLA-CQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD-ADGKCYIWDWK 585 (1019)
Q Consensus 508 ~~~i~~v~~spdg~~La-sgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl~ 585 (1019)
..+..++|+|+|++|+ +++.++.+.+|++.... .....+..+. ..+.+++|+|+|++|+.++ .++.+.||++.
T Consensus 129 -~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~ 203 (297)
T 2ojh_A 129 -LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS--GVETRLTHGE--GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVR 203 (297)
T ss_dssp -SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT--CCEEECCCSS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred -CCccceEECCCCCEEEEEECCCCceEEEEEECCC--CcceEcccCC--CccccceECCCCCEEEEEecCCCCccEEEEC
Confidence 1255678889999887 77889999999875321 1123344443 5689999999999888766 58999999986
Q ss_pred -CCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCC
Q psy307 586 -TTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619 (1019)
Q Consensus 586 -t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~D 619 (1019)
.+..+..+..|...+.+++|+|++ .+|++++.+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~ 237 (297)
T 2ojh_A 204 VDGSSVERITDSAYGDWFPHPSPSG-DKVVFVSYD 237 (297)
T ss_dssp TTSSCEEECCCCSEEEEEEEECTTS-SEEEEEEEE
T ss_pred CCCCCcEEEecCCcccCCeEECCCC-CEEEEEEcC
Confidence 566677888888889999999998 577777765
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=193.59 Aligned_cols=232 Identities=13% Similarity=0.072 Sum_probs=168.5
Q ss_pred CCCeEEEEEcCCCCcEEEEeeC-CCeEEEEecCCCcEEEEEecccC-ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe
Q psy307 335 TKGISAIRWFPKSAHLLLSCSM-DCRVKLWEVYKERRCVRTYYGHR-QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS 412 (1019)
Q Consensus 335 ~~~V~~i~fspd~g~lLaSgs~-Dg~I~IWdl~~~~~~~~~~~gh~-~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs 412 (1019)
..+|++++|+|| |+.|++++. ||+++||++ .++.+.+ +..|. ..|..++|+|| +++++++
T Consensus 21 ~~~~~~~~~~~D-G~~la~~s~~~g~~~lw~~-~~g~~~~-lt~~~~~~~~~~~~spd---------------~~l~~~~ 82 (582)
T 3o4h_A 21 AVEKYSLQGVVD-GDKLLVVGFSEGSVNAYLY-DGGETVK-LNREPINSVLDPHYGVG---------------RVILVRD 82 (582)
T ss_dssp HSCEEEEEEEET-TTEEEEEEEETTEEEEEEE-ETTEEEE-CCSSCCSEECEECTTCS---------------EEEEEEE
T ss_pred ccchheeecCCC-CCeEEEEEccCCceeEEEE-cCCCcEe-eecccccccccccCCCC---------------eEEEEec
Confidence 557999999997 677777766 999999998 4555444 44444 57877777765 3666666
Q ss_pred C---CCcEEEEEccC--CCeEEEEEccccccEeEEEEecCCCE-EEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEe
Q psy307 413 M---DCRVKLWEVYK--EHRCVRTYYGHRQAVRDICFNNTGTN-FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFH 486 (1019)
Q Consensus 413 ~---Dg~I~IWDl~~--~~~~~~~l~~H~~~V~sl~fspdg~~-l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~ 486 (1019)
. +....+|.+.. .+... .+..+. .+...+|+|+|+. +++++.++.+.+||+.++++.......
T Consensus 83 ~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~--------- 151 (582)
T 3o4h_A 83 VSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP--------- 151 (582)
T ss_dssp CSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES---------
T ss_pred cCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC---------
Confidence 5 55667776644 44333 332222 2345688888864 334444455559999888654433211
Q ss_pred cCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC----CeEEEEEccCcccccceeEEeccccccceEEEE
Q psy307 487 PDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD----NKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562 (1019)
Q Consensus 487 p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D----g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~ 562 (1019)
..+++|+|||++|++++.+ +.|++||+.++. ...+.+|. +.+..++
T Consensus 152 ------------------------~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~----~~~l~~~~--~~~~~~~ 201 (582)
T 3o4h_A 152 ------------------------GFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG----LRVFDSGE--GSFSSAS 201 (582)
T ss_dssp ------------------------SCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC----CEEECCSS--CEEEEEE
T ss_pred ------------------------CceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC----ceEeecCC--Cccccce
Confidence 0467889999999988877 789999988763 23556665 6689999
Q ss_pred EcCCCCEEEEEeCCC--eEEEEeCCCCceeeeeeccCCCEEEEE--------EcCCCCcEEEEEeCCCcEEEEec
Q psy307 563 FSPDMSYLISGDADG--KCYIWDWKTTKLFKKWKAHDGVCISTL--------WHPHEPSKVVTAGWDAATAKVQD 627 (1019)
Q Consensus 563 fspdg~~Lasgs~DG--~I~IWDl~t~~~l~~l~~h~~~V~sl~--------~sp~~~~~l~s~s~Dg~I~iwwd 627 (1019)
|||||++|++++.+| .|++||+.+++.. .+..|...+.+++ |+|+| .++++++.||++.+|.-
T Consensus 202 ~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 202 ISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID 274 (582)
T ss_dssp ECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET
T ss_pred ECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE
Confidence 999999999888888 8999999999887 7778877777677 99999 89999999999877644
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.7e-16 Score=193.93 Aligned_cols=258 Identities=10% Similarity=0.108 Sum_probs=174.6
Q ss_pred eEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE-EEecccC-----------------ccEeEEEEcCCCCceeEEEe
Q psy307 338 ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV-RTYYGHR-----------------QAVRDICFNNTGTNFISAIR 399 (1019)
Q Consensus 338 V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~-~~~~gh~-----------------~~V~~i~fspdg~~~vs~i~ 399 (1019)
+..+.|+ +..+++++.|| | +||+.++ +.+ ..+..|. ..|.+++|+|++
T Consensus 28 ~~~~~w~---g~~~~~~~~~~-i-~~d~~tg-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~-------- 93 (706)
T 2z3z_A 28 VVGLQWM---GDNYVFIEGDD-L-VFNKANG-KSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRG-------- 93 (706)
T ss_dssp CTTCEEE---TTEEEEEETTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTTT--------
T ss_pred CCCCcCc---CCeEEEEeCCc-E-EEECCCC-cEeeEEeechhHhhhhccchhccccccccCceeEEECCCC--------
Confidence 5557787 34566677788 8 9999543 332 3333333 357777777763
Q ss_pred ecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCC-----CceEEEE
Q psy307 400 WFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTES-----GECISRF 474 (1019)
Q Consensus 400 ~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t-----~~~i~~~ 474 (1019)
.++++ .++.|++||+. ++.. ..+..+...+.+++|+|||++|+++ .|+.|++||+.+ ++.....
T Consensus 94 ------~~~~~--~~~~i~~~d~~-~~~~-~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~ 162 (706)
T 2z3z_A 94 ------LVVLF--TQGGLVGFDML-ARKV-TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVT 162 (706)
T ss_dssp ------EEEEE--ETTEEEEEETT-TTEE-EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESC
T ss_pred ------eEEEE--ECCEEEEEECC-CCce-EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEec
Confidence 44444 35999999994 4444 3445567778999999999999885 789999999998 8776544
Q ss_pred ecCCc---------------eEEEEEecCCCeeeecc---------------------------------CCCceee---
Q psy307 475 TSRKV---------------AYCVKFHPDEDKQHLDI---------------------------------PVDMKYI--- 503 (1019)
Q Consensus 475 ~~~~~---------------v~~v~~~p~~~~~~~~~---------------------------------~~~~~~i--- 503 (1019)
..... +.++.|+|++..+++.. ......+
T Consensus 163 ~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~ 242 (706)
T 2z3z_A 163 IDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL 242 (706)
T ss_dssp SCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET
T ss_pred cCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC
Confidence 43332 47899999998766532 0001111
Q ss_pred --------e--CCCCCcccEEEEcCCCCEEEEEecCC-----eEEEEEccCcccccceeEEeccccccceEEEEEcC--C
Q psy307 504 --------A--DPTMHSMPAVTSSPNNKWLACQSMDN-----KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP--D 566 (1019)
Q Consensus 504 --------~--~~~~~~i~~v~~spdg~~Lasgs~Dg-----~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp--d 566 (1019)
. ..+...+..++|+|+|++|++++.++ .|.+||+.++.....+...........+.+++|+| |
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~d 322 (706)
T 2z3z_A 243 ATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSN 322 (706)
T ss_dssp TTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCS
T ss_pred CCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCC
Confidence 1 12334577899999999999988776 99999998762222221111110001235689999 9
Q ss_pred CCEEEEEeCCCeEEEEeCC-CCceeeeeeccCCCEEE-EEEcCCCCcEEEEEeCCC
Q psy307 567 MSYLISGDADGKCYIWDWK-TTKLFKKWKAHDGVCIS-TLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 567 g~~Lasgs~DG~I~IWDl~-t~~~l~~l~~h~~~V~s-l~~sp~~~~~l~s~s~Dg 620 (1019)
|+++++++.||.++||++. ++..+..+..|...+.+ ++|+|++..++++++.++
T Consensus 323 g~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~ 378 (706)
T 2z3z_A 323 NQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEAS 378 (706)
T ss_dssp SEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSC
T ss_pred CEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCC
Confidence 9999999999999999886 67778888888888877 799999965555665555
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-15 Score=168.68 Aligned_cols=235 Identities=9% Similarity=0.044 Sum_probs=157.6
Q ss_pred EEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccC-ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEE
Q psy307 341 IRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHR-QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKL 419 (1019)
Q Consensus 341 i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~-~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~I 419 (1019)
+++++ ++.++++++.++.|.+||+ .+++.+..+..+. ..+..++|+|+|. .++++++.++.|.+
T Consensus 5 ~~~~~-~~~~~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~s~dg~-------------~~~v~~~~~~~i~~ 69 (349)
T 1jmx_B 5 PALKA-GHEYMIVTNYPNNLHVVDV-ASDTVYKSCVMPDKFGPGTAMMAPDNR-------------TAYVLNNHYGDIYG 69 (349)
T ss_dssp CCCCT-TCEEEEEEETTTEEEEEET-TTTEEEEEEECSSCCSSCEEEECTTSS-------------EEEEEETTTTEEEE
T ss_pred ccccC-CCEEEEEeCCCCeEEEEEC-CCCcEEEEEecCCCCCCceeEECCCCC-------------EEEEEeCCCCcEEE
Confidence 45666 5789999999999999999 4556666665443 2567888888873 34566677899999
Q ss_pred EEccCCCeEEEEEcc-c-----cccEeEEEEecCCCEEEEEEcC------------CeEEEEECCCCce---EEEEecCC
Q psy307 420 WEVYKEHRCVRTYYG-H-----RQAVRDICFNNTGTNFISAGYD------------RYLKLWDTESGEC---ISRFTSRK 478 (1019)
Q Consensus 420 WDl~~~~~~~~~l~~-H-----~~~V~sl~fspdg~~l~S~s~D------------g~I~lWDl~t~~~---i~~~~~~~ 478 (1019)
||+ .+++....+.. + ...+.+++|+|+|+++++++.+ +.|.+||+.+++. +..+....
T Consensus 70 ~d~-~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 148 (349)
T 1jmx_B 70 IDL-DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR 148 (349)
T ss_dssp EET-TTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS
T ss_pred EeC-CCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC
Confidence 999 45555555543 2 2347889999999999998866 8999999987543 23333333
Q ss_pred ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccc-------------
Q psy307 479 VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNR------------- 545 (1019)
Q Consensus 479 ~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~------------- 545 (1019)
.+.+++|+| +|+ +++++ +.|.+||+.++.....
T Consensus 149 ~~~~~~~s~-------------------------------dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 194 (349)
T 1jmx_B 149 QVYLMRAAD-------------------------------DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSA 194 (349)
T ss_dssp SCCCEEECT-------------------------------TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCC
T ss_pred cccceeECC-------------------------------CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccC
Confidence 344444544 444 22222 2244454443311100
Q ss_pred ----------------------------------------------------eeEEeccccccceEEEEEcC-CCCEEEE
Q psy307 546 ----------------------------------------------------KKTFEGHMVAGYACSLDFSP-DMSYLIS 572 (1019)
Q Consensus 546 ----------------------------------------------------~~~l~gh~~~~~V~~v~fsp-dg~~Las 572 (1019)
...+.. ....+.+++|+| ||+++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~sp~dg~~l~~ 272 (349)
T 1jmx_B 195 PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD--LTELYFTGLRSPKDPNQIYG 272 (349)
T ss_dssp CBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE--CSSCEEEEEECSSCTTEEEE
T ss_pred ccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccccc--CCCcceeeEecCCCCCEEEE
Confidence 000011 113467889999 9999998
Q ss_pred EeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceee
Q psy307 573 GDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVK 632 (1019)
Q Consensus 573 gs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~k 632 (1019)
+ ++.|.+||+.+++.+..+..+ ..+.+++|+|++. .|++++.++.|.+| +....+
T Consensus 273 ~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~-~l~~~~~~~~v~v~-d~~~~~ 327 (349)
T 1jmx_B 273 V--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGD-KLYLGGTFNDLAVF-NPDTLE 327 (349)
T ss_dssp E--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSS-CEEEESBSSEEEEE-ETTTTE
T ss_pred E--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCC-EEEEecCCCeEEEE-eccccc
Confidence 8 889999999999988887644 3467999999984 66667888888665 554433
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-16 Score=183.64 Aligned_cols=216 Identities=11% Similarity=0.102 Sum_probs=148.6
Q ss_pred CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCC----------Ce
Q psy307 358 CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE----------HR 427 (1019)
Q Consensus 358 g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~----------~~ 427 (1019)
+.|++|+.... .....++.+++++++ .++++++.|+ +++|+.... ..
T Consensus 23 ~~vri~~~~~~--------~~~~~~n~lavs~~~--------------~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~ 79 (434)
T 2oit_A 23 KKVRIFDSPEE--------LPKERSSLLAVSNKY--------------GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNK 79 (434)
T ss_dssp CEEECSCCCSS--------CCCSCCBCEEEETTT--------------TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTC
T ss_pred eeEEecCCccc--------cCCCCccEEEEecCC--------------CEEEEECCCE-EEEEEchHhhhhcccccCccc
Confidence 46777764211 123457888888877 6888898888 899876311 01
Q ss_pred EEE----EEccccccEeEEEEecCCCEEE----EEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCC
Q psy307 428 CVR----TYYGHRQAVRDICFNNTGTNFI----SAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVD 499 (1019)
Q Consensus 428 ~~~----~l~~H~~~V~sl~fspdg~~l~----S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~ 499 (1019)
... ....|...|.+++|+|+|++|+ +++.|++|+|||++++.... ......+.
T Consensus 80 ~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~-~~~~~~~~------------------ 140 (434)
T 2oit_A 80 IVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEA-KQQKRPFA------------------ 140 (434)
T ss_dssp EEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTT-CSSCCCSE------------------
T ss_pred ccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCC-cCCcceee------------------
Confidence 110 1123567899999999999999 78889999999986541000 00000000
Q ss_pred ceeeeCCCCCcccEEEEcCC-CCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCe
Q psy307 500 MKYIADPTMHSMPAVTSSPN-NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGK 578 (1019)
Q Consensus 500 ~~~i~~~~~~~i~~v~~spd-g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~ 578 (1019)
.......|...|.+++|+|+ +.+|++++.||+|++||++++. ......+|. ..|.+++|+|+|++|++|+.||+
T Consensus 141 ~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~---~~~~~~~~~--~~v~~v~wspdg~~lasgs~dg~ 215 (434)
T 2oit_A 141 YHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV---KVCATLPST--VAVTSVCWSPKGKQLAVGKQNGT 215 (434)
T ss_dssp EEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE---EEEEEECGG--GCEEEEEECTTSSCEEEEETTSC
T ss_pred eeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc---ceeeccCCC--CceeEEEEcCCCCEEEEEcCCCc
Confidence 01112234567888999997 7899999999999999998762 234445565 67999999999999999999999
Q ss_pred EEEEeCCCCceeeeeecc-------CCCEEEEEEcCCCCcEEEEEeCCCc
Q psy307 579 CYIWDWKTTKLFKKWKAH-------DGVCISTLWHPHEPSKVVTAGWDAA 621 (1019)
Q Consensus 579 I~IWDl~t~~~l~~l~~h-------~~~V~sl~~sp~~~~~l~s~s~Dg~ 621 (1019)
|++||++ ++....+..| ...|.+++|++++...++.++.||.
T Consensus 216 v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 216 VVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 9999998 6666655544 2379999999987433334545554
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-15 Score=173.44 Aligned_cols=282 Identities=12% Similarity=0.007 Sum_probs=185.8
Q ss_pred ccceeeeccCCCCeEE-----EEEcCCCCcEEEEeeC-CC--eEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeE
Q psy307 325 KTQVHTWEGHTKGISA-----IRWFPKSAHLLLSCSM-DC--RVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFIS 396 (1019)
Q Consensus 325 ~~~i~~l~gH~~~V~~-----i~fspd~g~lLaSgs~-Dg--~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs 396 (1019)
...+..+..|...+.. .+|+|| |+.|+.++. +| .|.+||+ .+++......++...+..+.|+|||
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~g~~~l~~~d~-~~g~~~~lt~~~~~~~~~~~~spdg----- 92 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRD-GSKLLFGGAFDGPWNYYLLDL-NTQVATQLTEGRGDNTFGGFLSPDD----- 92 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEET-TTCEEEECCCSSCBCSSSCEECTTS-----
T ss_pred CcceEEecCCcccccchhhcCccCCCC-CCEEEEEEcCCCCceEEEEeC-CCCceEEeeeCCCCCccceEEcCCC-----
Confidence 3456677788776666 889997 565665555 77 4788888 4556666666676666678899999
Q ss_pred EEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEE--EecCCCEEEEEE-------------------
Q psy307 397 AIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDIC--FNNTGTNFISAG------------------- 455 (1019)
Q Consensus 397 ~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~--fspdg~~l~S~s------------------- 455 (1019)
+.|+.++.++.|++||+. +++....+..+...+.... ++++++.++...
T Consensus 93 ---------~~l~~~~~~~~l~~~d~~-~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T 3pe7_A 93 ---------DALFYVKDGRNLMRVDLA-TLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFY 162 (388)
T ss_dssp ---------SEEEEEETTTEEEEEETT-TCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHG
T ss_pred ---------CEEEEEeCCCeEEEEECC-CCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhh
Confidence 688888889999999994 4555555555665554444 489999887432
Q ss_pred ---cCCeEEEEECCCCceEEEEecCCceEEEEEec-CCCeeeeccCC------CceeeeC----------CCC--CcccE
Q psy307 456 ---YDRYLKLWDTESGECISRFTSRKVAYCVKFHP-DEDKQHLDIPV------DMKYIAD----------PTM--HSMPA 513 (1019)
Q Consensus 456 ---~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p-~~~~~~~~~~~------~~~~i~~----------~~~--~~i~~ 513 (1019)
.+..|.+||+.+++..........+..+.|+| ++..+++.... ...+..+ ... ..+..
T Consensus 163 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 242 (388)
T 3pe7_A 163 FTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTH 242 (388)
T ss_dssp GGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEE
T ss_pred ccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCccccc
Confidence 34689999999998776666667788999999 88765542211 0111111 111 23557
Q ss_pred EEEcCCCCEEEEEec-CC----eEEEEEccCcccccceeEEeccccc-cceEEEEEcCCCCEEEEE---------eCCCe
Q psy307 514 VTSSPNNKWLACQSM-DN----KILIFSALNRFKLNRKKTFEGHMVA-GYACSLDFSPDMSYLISG---------DADGK 578 (1019)
Q Consensus 514 v~~spdg~~Lasgs~-Dg----~I~iwd~~~~~~~~~~~~l~gh~~~-~~V~~v~fspdg~~Lasg---------s~DG~ 578 (1019)
++|+|+|+.|+..+. ++ .|++||+.++.. ..+..+.++... .....+.|+|||+.|+.. ..++.
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 321 (388)
T 3pe7_A 243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN-RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPF 321 (388)
T ss_dssp EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE-EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCE
T ss_pred ceECCCCCEEEEEecCCCCCcceEEEEecCCCce-EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCE
Confidence 899999998866543 22 399999987642 122233331100 001123799999988754 45668
Q ss_pred EEEEeCCCCceeeeeeccCC-----------CEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 579 CYIWDWKTTKLFKKWKAHDG-----------VCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 579 I~IWDl~t~~~l~~l~~h~~-----------~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
|++||+.+++. ..+..|.. .+.+++|+|+|..+++++..+|...+|
T Consensus 322 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 322 LYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp EEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred EEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence 99999998765 45555555 578899999996555555567766544
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-14 Score=163.91 Aligned_cols=268 Identities=10% Similarity=0.036 Sum_probs=171.4
Q ss_pred CCCCCCCeeeeCCCC----CceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC
Q psy307 293 PTDYQGRSFLHPPHD----VGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE 368 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D----~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~ 368 (1019)
.++++|+.++.+..+ +.+.+|....... ..+.+.....+...+..+++ ++..++++...++.|.+|++...
T Consensus 56 ~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g---~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~ 130 (361)
T 3scy_A 56 IPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG---TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQD 130 (361)
T ss_dssp EECTTSSEEEEEECCSSTTCEEEEEEEETTTT---EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTT
T ss_pred EECCCCCEEEEEEccCCCCCcEEEEEEeCCCC---cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCC
Confidence 357889988877765 7899997654211 11344555556667888888 43444444447899999999544
Q ss_pred cEEE---E--Eecc--------cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe------E-
Q psy307 369 RRCV---R--TYYG--------HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR------C- 428 (1019)
Q Consensus 369 ~~~~---~--~~~g--------h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~------~- 428 (1019)
+... . ...+ +...+.+++|+|+|. .+++++..++.|.+|++..... .
T Consensus 131 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~-------------~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~ 197 (361)
T 3scy_A 131 GALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK-------------YLLADDLGTDQIHKFNINPNANADNKEKFL 197 (361)
T ss_dssp SCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS-------------EEEEEETTTTEEEEEEECTTCCTTTCCCCE
T ss_pred CcCcccceeEEccCCCCCccccCCCcceEEEECCCCC-------------EEEEEeCCCCEEEEEEEcCCCCccccccee
Confidence 3211 1 1111 122346677777773 3455555689999999864432 2
Q ss_pred -----EEEEccccccEeEEEEecCCCEEEEEE-cCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCcee
Q psy307 429 -----VRTYYGHRQAVRDICFNNTGTNFISAG-YDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKY 502 (1019)
Q Consensus 429 -----~~~l~~H~~~V~sl~fspdg~~l~S~s-~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~ 502 (1019)
......+...+.+++|+|+|+++++++ .++.|.+||+.++....... +...+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~-------~~~~~--------------- 255 (361)
T 3scy_A 198 TKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT-------VAADT--------------- 255 (361)
T ss_dssp EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE-------EESCS---------------
T ss_pred ecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE-------EecCC---------------
Confidence 122334456678999999999888777 68999999998765422111 00001
Q ss_pred eeCCCCCcccEEEEcCCCCEEEEEecC--CeEEEEEccC-cccccceeEEeccccccceEEEEEcCCCCEEEEEe-CCCe
Q psy307 503 IADPTMHSMPAVTSSPNNKWLACQSMD--NKILIFSALN-RFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD-ADGK 578 (1019)
Q Consensus 503 i~~~~~~~i~~v~~spdg~~Lasgs~D--g~I~iwd~~~-~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs-~DG~ 578 (1019)
.+......++|+|+|++|+++..+ +.|.+|++.. ......+..+.. ...+.+++|+|||++|++++ .++.
T Consensus 256 ---~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~ 329 (361)
T 3scy_A 256 ---VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGKYLLVACRDTNV 329 (361)
T ss_dssp ---SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSCEEEEEETTTTE
T ss_pred ---CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC---CCCCceEEECCCCCEEEEEECCCCC
Confidence 011234578999999998776654 8999999862 222223333333 24577899999999988887 6789
Q ss_pred EEEE--eCCCCceeeee-eccCCCEEEEEEc
Q psy307 579 CYIW--DWKTTKLFKKW-KAHDGVCISTLWH 606 (1019)
Q Consensus 579 I~IW--Dl~t~~~l~~l-~~h~~~V~sl~~s 606 (1019)
|.+| |..++++.... ..+...+.|+.|.
T Consensus 330 v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 330 IQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 9996 55577765543 2344578888885
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.3e-15 Score=165.90 Aligned_cols=253 Identities=11% Similarity=0.093 Sum_probs=164.7
Q ss_pred CCCCCCeeeeCC--CCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEee-CCCeEEEEecCCCc-
Q psy307 294 TDYQGRSFLHPP--HDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCS-MDCRVKLWEVYKER- 369 (1019)
Q Consensus 294 ~~~~gr~~~~~~--~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs-~Dg~I~IWdl~~~~- 369 (1019)
++++|+.++... .++.|.+|+..... .+.+..+..|...+..++|+|+ +.+|++++ .++.|.+|++...+
T Consensus 47 ~spdg~l~~~~~~~~~~~v~~~~~~~g~-----~~~~~~~~~~~~~p~~~a~spd-g~~l~~~~~~~~~v~v~~~~~~g~ 120 (347)
T 3hfq_A 47 LSAKDCLYSVDKEDDEGGIAAWQIDGQT-----AHKLNTVVAPGTPPAYVAVDEA-RQLVYSANYHKGTAEVMKIAADGA 120 (347)
T ss_dssp ECTTCEEEEEEEETTEEEEEEEEEETTE-----EEEEEEEEEESCCCSEEEEETT-TTEEEEEETTTTEEEEEEECTTSC
T ss_pred EccCCeEEEEEecCCCceEEEEEecCCc-----EEEeeeeecCCCCCEEEEECCC-CCEEEEEeCCCCEEEEEEeCCCCC
Confidence 467888444442 26889999874321 1345566678889999999997 66666666 78999999995332
Q ss_pred -EEEEEeccc---------CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEE--EEEccc-c
Q psy307 370 -RCVRTYYGH---------RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCV--RTYYGH-R 436 (1019)
Q Consensus 370 -~~~~~~~gh---------~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~--~~l~~H-~ 436 (1019)
..+..+... ...+.+++|+|+| ++++++..++.|.+|++...+... ..+..+ .
T Consensus 121 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg--------------~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g 186 (347)
T 3hfq_A 121 LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN--------------RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG 186 (347)
T ss_dssp EEEEEEEECCCCCSSTTCSSCCEEEEEECTTS--------------CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT
T ss_pred eeecceeecCCCCCCccccCCCceEEEECCCC--------------cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC
Confidence 223332211 1236667777776 466777778999999996444332 222222 3
Q ss_pred ccEeEEEEecCCCEEEEE-EcCCeEEEEECCC--CceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccE
Q psy307 437 QAVRDICFNNTGTNFISA-GYDRYLKLWDTES--GECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPA 513 (1019)
Q Consensus 437 ~~V~sl~fspdg~~l~S~-s~Dg~I~lWDl~t--~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~ 513 (1019)
..+..++|+|+|++++++ ..++.|.+|++.. ++...... +...|.+ ......+..
T Consensus 187 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~-------~~~~~~~---------------~~~~~~~~~ 244 (347)
T 3hfq_A 187 FGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGI-------VKTIPAD---------------YTAHNGAAA 244 (347)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE-------EESSCTT---------------CCSCCEEEE
T ss_pred CCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeee-------eeecCCC---------------CCCCCccee
Confidence 367889999999976654 5678999999874 43211110 0001110 001134567
Q ss_pred EEEcCCCCEE-EEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC-CeEEEE--eCCCCce
Q psy307 514 VTSSPNNKWL-ACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD-GKCYIW--DWKTTKL 589 (1019)
Q Consensus 514 v~~spdg~~L-asgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D-G~I~IW--Dl~t~~~ 589 (1019)
++|+|+|++| ++...++.|.+|++........+..+..+. ..+..++|+|||++|++++.+ +.|.+| |..++++
T Consensus 245 i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 245 IRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEG--DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp EEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSS--SCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCC--CCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 8999999987 455668999999987432333444454433 457789999999998888764 899999 5566765
Q ss_pred e
Q psy307 590 F 590 (1019)
Q Consensus 590 l 590 (1019)
.
T Consensus 323 ~ 323 (347)
T 3hfq_A 323 S 323 (347)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-14 Score=165.05 Aligned_cols=251 Identities=12% Similarity=0.041 Sum_probs=162.2
Q ss_pred CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEeccc-CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe
Q psy307 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGH-RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS 412 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh-~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs 412 (1019)
+...+..++|+|+ +++|++++.+ .|.+|++...+++....... .+.+.+++|+|+|..+ ++++++
T Consensus 38 ~~~~~~~~a~spd-g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l------------~~~~~~ 103 (365)
T 1jof_A 38 QDEPISWMTFDHE-RKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAI------------FLLAAK 103 (365)
T ss_dssp TTCCCSEEEECTT-SSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEE------------EEEECS
T ss_pred CCCCCcEEEECCC-CCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEE------------EEEEec
Confidence 4457889999996 7788888888 99999985244443322210 1235567788887310 244442
Q ss_pred -------------CCCcEEEEEccCCCeEEEEEc----cccccEeEEEEecCCCEEEEEEc-CCeEEEEECC-CCceEEE
Q psy307 413 -------------MDCRVKLWEVYKEHRCVRTYY----GHRQAVRDICFNNTGTNFISAGY-DRYLKLWDTE-SGECISR 473 (1019)
Q Consensus 413 -------------~Dg~I~IWDl~~~~~~~~~l~----~H~~~V~sl~fspdg~~l~S~s~-Dg~I~lWDl~-t~~~i~~ 473 (1019)
.+|.+.+|++...+.....+. .+...+.+++|+|+|++++++.. ++.|.+||+. +++....
T Consensus 104 ~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~ 183 (365)
T 1jof_A 104 QPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELV 183 (365)
T ss_dssp STTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred CCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEe
Confidence 689999999965555443333 25567999999999998887764 6899999998 6654221
Q ss_pred EecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec-CCeEEEEEccC--cccc---ccee
Q psy307 474 FTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM-DNKILIFSALN--RFKL---NRKK 547 (1019)
Q Consensus 474 ~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~-Dg~I~iwd~~~--~~~~---~~~~ 547 (1019)
.. +.. ..+...+..++|+|+|+++++++. ++.|.+|++.. +... ..+.
T Consensus 184 ~~-------~~~-------------------~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 237 (365)
T 1jof_A 184 GS-------VDA-------------------PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP 237 (365)
T ss_dssp EE-------EEC-------------------SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred ee-------Eec-------------------CCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE
Confidence 10 000 001233567888999999887764 78999998753 3111 0111
Q ss_pred EEecc-cc-cc------ceEEEE-EcCCCCEEEEEeCCC------eEEEEeCC-CCceee---eeeccCCCEEEEEEcC-
Q psy307 548 TFEGH-MV-AG------YACSLD-FSPDMSYLISGDADG------KCYIWDWK-TTKLFK---KWKAHDGVCISTLWHP- 607 (1019)
Q Consensus 548 ~l~gh-~~-~~------~V~~v~-fspdg~~Lasgs~DG------~I~IWDl~-t~~~l~---~l~~h~~~V~sl~~sp- 607 (1019)
.+... .. .. .+..++ |+|||++|++++.++ .|.+|++. ++++.. .+..+...+..++|+|
T Consensus 238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~ 317 (365)
T 1jof_A 238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPC 317 (365)
T ss_dssp SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEEC
T ss_pred cCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCC
Confidence 11111 00 01 478899 999999988766432 89999996 666543 2333444567889999
Q ss_pred --CCCcEEEEEeCC-CcEEEE
Q psy307 608 --HEPSKVVTAGWD-AATAKV 625 (1019)
Q Consensus 608 --~~~~~l~s~s~D-g~I~iw 625 (1019)
++ .+|++++.+ ++|.+|
T Consensus 318 ~~dg-~~l~v~~~~~~~v~v~ 337 (365)
T 1jof_A 318 PWSD-EWMAITDDQEGWLEIY 337 (365)
T ss_dssp TTCT-TEEEEECSSSCEEEEE
T ss_pred CcCC-CEEEEEEcCCCeEEEE
Confidence 67 577777764 777665
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.5e-16 Score=190.72 Aligned_cols=278 Identities=11% Similarity=0.050 Sum_probs=171.9
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCC---CeEEEEEcCCCCcEEEEeeC---------CCeE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTK---GISAIRWFPKSAHLLLSCSM---------DCRV 360 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~---~V~~i~fspd~g~lLaSgs~---------Dg~I 360 (1019)
.+.++|+.++.+ .|+.|.+|+.... +....+.+|.. .|.+++|||| |++|++++. |+.|
T Consensus 22 ~~s~dg~~~~~~-~d~~i~~~~~~~g-------~~~~~~~~~~~~~~~~~~~~~SpD-g~~la~~~~~~~~~~~s~~~~i 92 (719)
T 1z68_A 22 NWISGQEYLHQS-ADNNIVLYNIETG-------QSYTILSNRTMKSVNASNYGLSPD-RQFVYLESDYSKLWRYSYTATY 92 (719)
T ss_dssp EESSSSEEEEEC-TTSCEEEEESSSC-------CEEEEECHHHHHTTTCSEEEECTT-SSEEEEEEEEEECSSSCEEEEE
T ss_pred EECCCCeEEEEc-CCCCEEEEEcCCC-------cEEEEEccccccccceeeEEECCC-CCeEEEEecCceeEEeecceEE
Confidence 466788655544 6899999987643 33444555543 4999999996 777777765 7999
Q ss_pred EEEecCCCcEEE--EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEE-Eccccc
Q psy307 361 KLWEVYKERRCV--RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRT-YYGHRQ 437 (1019)
Q Consensus 361 ~IWdl~~~~~~~--~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~-l~~H~~ 437 (1019)
++||+.+ ++++ ..+ ...+.+++||||| +.|+.++ ++.|++||+..+. ..+. ..++..
T Consensus 93 ~~~d~~~-g~~~~~~~l---~~~~~~~~~SPDG--------------~~la~~~-~~~i~~~~~~~g~-~~~l~~~~~~~ 152 (719)
T 1z68_A 93 YIYDLSN-GEFVRGNEL---PRPIQYLCWSPVG--------------SKLAYVY-QNNIYLKQRPGDP-PFQITFNGREN 152 (719)
T ss_dssp EEEETTT-TEECCSSCC---CSSBCCEEECSST--------------TCEEEEE-TTEEEEESSTTSC-CEECCCCCBTT
T ss_pred EEEECCC-Cccccceec---CcccccceECCCC--------------CEEEEEE-CCeEEEEeCCCCC-cEEEecCCCcC
Confidence 9999944 4431 122 2568889999998 4566654 7899999995433 3332 233333
Q ss_pred cE-----------------eEEEEecCCCEEEEEEcCC----------------------------------eEEEEECC
Q psy307 438 AV-----------------RDICFNNTGTNFISAGYDR----------------------------------YLKLWDTE 466 (1019)
Q Consensus 438 ~V-----------------~sl~fspdg~~l~S~s~Dg----------------------------------~I~lWDl~ 466 (1019)
.| .+++|+|||++|++++.|. .|++||+.
T Consensus 153 ~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~ 232 (719)
T 1z68_A 153 KIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT 232 (719)
T ss_dssp TEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS
T ss_pred CeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC
Confidence 22 4899999999999988762 34444444
Q ss_pred CCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC----CeEEEEE----cc
Q psy307 467 SGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD----NKILIFS----AL 538 (1019)
Q Consensus 467 t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D----g~I~iwd----~~ 538 (1019)
+++....+.. ..+ .....+...+..++|+||++++++.... ..|.+|| +.
T Consensus 233 ~~~~~~~~~~------------------~~~----~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~ 290 (719)
T 1z68_A 233 YPAYVGPQEV------------------PVP----AMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ 290 (719)
T ss_dssp CHHHHCCEEC------------------CCC----HHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS
T ss_pred CCCccceeEc------------------cCC----ccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC
Confidence 4332100000 000 0011244567789999998877775433 2488899 66
Q ss_pred Cccccccee-EEeccccccceE-----EEEEcCCCCEEEE--EeCCC--eEEEEeCCCCceeeeeeccCCCEEEEEEcCC
Q psy307 539 NRFKLNRKK-TFEGHMVAGYAC-----SLDFSPDMSYLIS--GDADG--KCYIWDWKTTKLFKKWKAHDGVCISTLWHPH 608 (1019)
Q Consensus 539 ~~~~~~~~~-~l~gh~~~~~V~-----~v~fspdg~~Las--gs~DG--~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~ 608 (1019)
++....... ...+|. +++. .+.|+|||+.++. +..+| .|++||+.+++ ...+..+...+..+.++ +
T Consensus 291 ~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d 366 (719)
T 1z68_A 291 TWDCPKTQEHIEESRT--GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-T 366 (719)
T ss_dssp SEECCGGGEEEEECSS--SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-C
T ss_pred CCceEEEEecccccCC--ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-e
Confidence 653322221 012343 3444 6899999996544 44555 57778887776 45566666678887777 7
Q ss_pred CCcEEEEEeC----CCcEEEE
Q psy307 609 EPSKVVTAGW----DAATAKV 625 (1019)
Q Consensus 609 ~~~~l~s~s~----Dg~I~iw 625 (1019)
+..+++++.. ++.+.+|
T Consensus 367 ~~~i~~~~~~~~~~~~~~~l~ 387 (719)
T 1z68_A 367 QDSLFYSSNEFEEYPGRRNIY 387 (719)
T ss_dssp SSEEEEEESCGGGCTTCBEEE
T ss_pred CCEEEEEEecCCCCCceEEEE
Confidence 7544444443 3666555
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=188.82 Aligned_cols=250 Identities=13% Similarity=0.162 Sum_probs=163.1
Q ss_pred EEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCc---cEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC---
Q psy307 340 AIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQ---AVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM--- 413 (1019)
Q Consensus 340 ~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~---~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~--- 413 (1019)
+++|+|+ +.+++++ .|++|++||+ .++++...+.+|.. .|.+++||||| ++|++++.
T Consensus 20 ~~~~s~d-g~~~~~~-~d~~i~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~SpDg--------------~~la~~~~~~~ 82 (719)
T 1z68_A 20 FPNWISG-QEYLHQS-ADNNIVLYNI-ETGQSYTILSNRTMKSVNASNYGLSPDR--------------QFVYLESDYSK 82 (719)
T ss_dssp CCEESSS-SEEEEEC-TTSCEEEEES-SSCCEEEEECHHHHHTTTCSEEEECTTS--------------SEEEEEEEEEE
T ss_pred ccEECCC-CeEEEEc-CCCCEEEEEc-CCCcEEEEEccccccccceeeEEECCCC--------------CeEEEEecCce
Confidence 6799997 5655554 6999999999 44555666666544 48999999999 56666655
Q ss_pred ------CCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEec
Q psy307 414 ------DCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHP 487 (1019)
Q Consensus 414 ------Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p 487 (1019)
++.|++||+. +++.+.. ......+.+++|||||+.|++++ |+.|++||+.++++............ ++
T Consensus 83 ~~~~s~~~~i~~~d~~-~g~~~~~-~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v--~~- 156 (719)
T 1z68_A 83 LWRYSYTATYYIYDLS-NGEFVRG-NELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKI--FN- 156 (719)
T ss_dssp CSSSCEEEEEEEEETT-TTEECCS-SCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTE--EE-
T ss_pred eEEeecceEEEEEECC-CCccccc-eecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCe--Ec-
Confidence 7899999994 4443100 11135688899999999999885 78999999998876542211110000 00
Q ss_pred CCCeeeeccCCCceeee-CCCCCcccEEEEcCCCCEEEEEecCC----------------------------------eE
Q psy307 488 DEDKQHLDIPVDMKYIA-DPTMHSMPAVTSSPNNKWLACQSMDN----------------------------------KI 532 (1019)
Q Consensus 488 ~~~~~~~~~~~~~~~i~-~~~~~~i~~v~~spdg~~Lasgs~Dg----------------------------------~I 532 (1019)
+.+ ..+. ........+++|||||++|++++.|. .|
T Consensus 157 -------g~~---~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l 226 (719)
T 1z68_A 157 -------GIP---DWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRI 226 (719)
T ss_dssp -------SSC---CHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEE
T ss_pred -------ccc---cceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEE
Confidence 000 0000 00012235788999999998887652 78
Q ss_pred EEEEccCcccc--cce---eEEeccccccceEEEEEcCCCCEEEEEeCC----CeEEEEe----CCCCceeeee----ec
Q psy307 533 LIFSALNRFKL--NRK---KTFEGHMVAGYACSLDFSPDMSYLISGDAD----GKCYIWD----WKTTKLFKKW----KA 595 (1019)
Q Consensus 533 ~iwd~~~~~~~--~~~---~~l~gh~~~~~V~~v~fspdg~~Lasgs~D----G~I~IWD----l~t~~~l~~l----~~ 595 (1019)
++||+.++... ..+ ..+.+|. ..+.+++|||||+++++.... ..|++|| +.+++....+ .+
T Consensus 227 ~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~ 304 (719)
T 1z68_A 227 FIIDTTYPAYVGPQEVPVPAMIASSD--YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEES 304 (719)
T ss_dssp EEEESSCHHHHCCEECCCCHHHHTSC--EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEEC
T ss_pred EEEECCCCCccceeEccCCccCCCCc--ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEeccccc
Confidence 89999876321 000 1122444 668999999999887775432 3589999 8888776666 46
Q ss_pred cCCCEE-----EEEEcCCCCcEEE-EEeCCCcEEE
Q psy307 596 HDGVCI-----STLWHPHEPSKVV-TAGWDAATAK 624 (1019)
Q Consensus 596 h~~~V~-----sl~~sp~~~~~l~-s~s~Dg~I~i 624 (1019)
|.+.+. .+.|+|+|..+++ +...+|...+
T Consensus 305 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l 339 (719)
T 1z68_A 305 RTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHI 339 (719)
T ss_dssp SSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEE
T ss_pred CCceEccccCCccEECCCCCeEEEEEEccCCceEE
Confidence 777666 8899999965444 4556665444
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=7.9e-13 Score=144.41 Aligned_cols=238 Identities=11% Similarity=0.195 Sum_probs=170.7
Q ss_pred cCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec------ccCccEeEEEE-cCCCCceeEEEeecCCCC
Q psy307 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY------GHRQAVRDICF-NNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~------gh~~~V~~i~f-spdg~~~vs~i~~~p~~~ 405 (1019)
+|-..+.+++++++ +.++++.+.++.|.+||.. +..+..+. +|...+.++++ .+++
T Consensus 27 g~~~~p~~v~~~~~-g~l~v~~~~~~~i~~~d~~--g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g-------------- 89 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQ-NDIIVADTNNHRIQIFDKE--GRFKFQFGECGKRDSQLLYPNRVAVVRNSG-------------- 89 (286)
T ss_dssp TCBSCEEEEEECTT-CCEEEEEGGGTEEEEECTT--SCEEEEECCBSSSTTCBSSEEEEEEETTTT--------------
T ss_pred CccCCCceEEECCC-CCEEEEECCCCEEEEECCC--CcEEEEecccCCCcccccCceEEEEEcCCC--------------
Confidence 55668999999996 6788888899999999974 34445443 23456777777 3555
Q ss_pred cEEEEEeC-CCcEEEEEccCCCeEEEEEc-cccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEE
Q psy307 406 HLLLSCSM-DCRVKLWEVYKEHRCVRTYY-GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCV 483 (1019)
Q Consensus 406 ~~L~sgs~-Dg~I~IWDl~~~~~~~~~l~-~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v 483 (1019)
.++++... ++.|.+||. .+..+..+. .+...+.+++++++|+.+++.+.++.|.+||.. ++.+..+...
T Consensus 90 ~l~v~~~~~~~~i~~~d~--~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~------ 160 (286)
T 1q7f_A 90 DIIVTERSPTHQIQIYNQ--YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCS------ 160 (286)
T ss_dssp EEEEEECGGGCEEEEECT--TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECT------
T ss_pred eEEEEcCCCCCEEEEECC--CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCC------
Confidence 45555543 899999994 344455553 345678999999999988777778999999964 4444433211
Q ss_pred EEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEE
Q psy307 484 KFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDF 563 (1019)
Q Consensus 484 ~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~f 563 (1019)
.....+..++++|+|+++++.+.++.|.+||.... .+..+..+.....+..+++
T Consensus 161 ----------------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~----~~~~~~~~g~~~~p~~i~~ 214 (286)
T 1q7f_A 161 ----------------------KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ----YLRQIGGEGITNYPIGVGI 214 (286)
T ss_dssp ----------------------TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC----EEEEESCTTTSCSEEEEEE
T ss_pred ----------------------CccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC----EEEEEccCCccCCCcEEEE
Confidence 11234567888999998888888999999997543 2334433221245889999
Q ss_pred cCCCCEEEEEeCCC-eEEEEeCCCCceeeeeeccCC--CEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 564 SPDMSYLISGDADG-KCYIWDWKTTKLFKKWKAHDG--VCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 564 spdg~~Lasgs~DG-~I~IWDl~t~~~l~~l~~h~~--~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+++|+++++...++ .|.+||. +++.+..+..+.. .+.+++++|++ .++++ +.|++|.+|
T Consensus 215 d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g-~l~vs-~~~~~v~v~ 276 (286)
T 1q7f_A 215 NSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDG-SVVLA-SKDYRLYIY 276 (286)
T ss_dssp CTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTT-EEEEE-ETTTEEEEE
T ss_pred CCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCC-cEEEE-CCCCeEEEE
Confidence 99999888888886 9999995 5777777765543 47899999988 56666 678999777
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.6e-13 Score=150.96 Aligned_cols=250 Identities=9% Similarity=0.110 Sum_probs=177.9
Q ss_pred CCeEEEEEcCCCCcEEEEeeCC------------------------CeEEEEecCCCcEEEEEec-ccCccEeEEEEcCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMD------------------------CRVKLWEVYKERRCVRTYY-GHRQAVRDICFNNT 390 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~D------------------------g~I~IWdl~~~~~~~~~~~-gh~~~V~~i~fspd 390 (1019)
+.|.+|+++|+ ++++++.+.+ +.|.+||.. +++.+..+. ++-.....++++++
T Consensus 24 ~~v~~va~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 24 GQVSGVALDSK-NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN-NAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp SCEEEEEECTT-CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTT-TCCEEEEECTTTCSSEEEEEECTT
T ss_pred CCceEEEECCC-CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECC-CCeEEeccCCCccCCceEEEECCC
Confidence 57999999996 7888888777 479999984 344444443 45567888999988
Q ss_pred CCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEE---------ccccccEeEEEEec-CCCEEEEEE-cCCe
Q psy307 391 GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY---------YGHRQAVRDICFNN-TGTNFISAG-YDRY 459 (1019)
Q Consensus 391 g~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l---------~~H~~~V~sl~fsp-dg~~l~S~s-~Dg~ 459 (1019)
| +++++.+.++.|++||.......+..+ .++......|+++| ++..+++.+ .++.
T Consensus 102 g--------------~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 102 G--------------NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp S--------------CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred C--------------CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 8 678888889999999984332244444 34555789999999 788777776 5899
Q ss_pred EEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC-CCEEEEEecCCeEEEEEcc
Q psy307 460 LKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN-NKWLACQSMDNKILIFSAL 538 (1019)
Q Consensus 460 I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd-g~~Lasgs~Dg~I~iwd~~ 538 (1019)
|++|| .++..+..+..... +. ............++++|+ +.++++...++.|++|+..
T Consensus 168 I~~~~-~~g~~~~~~~~~g~---------~~-----------~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 168 IVQFS-PSGKFVTQWGEESS---------GS-----------SPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD 226 (329)
T ss_dssp EEEEC-TTSCEEEEECEECC---------SS-----------SCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEc-CCCCEEEEeccCCC---------CC-----------CCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence 99999 56666655532110 00 000011123567889998 7778888889999999998
Q ss_pred CcccccceeEEeccccccceEEEEEcC------CCCEEEEEeCCCeEEEEeCCCCceeeeee---ccCCCEEEEEEcCCC
Q psy307 539 NRFKLNRKKTFEGHMVAGYACSLDFSP------DMSYLISGDADGKCYIWDWKTTKLFKKWK---AHDGVCISTLWHPHE 609 (1019)
Q Consensus 539 ~~~~~~~~~~l~gh~~~~~V~~v~fsp------dg~~Lasgs~DG~I~IWDl~t~~~l~~l~---~h~~~V~sl~~sp~~ 609 (1019)
++. .+..+........+..++|+| +|+..++...+.+|++||..+++.+..+. ++-..+.+++++|+|
T Consensus 227 ~G~---~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG 303 (329)
T 3fvz_A 227 TKE---FVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG 303 (329)
T ss_dssp TCC---EEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS
T ss_pred CCc---EEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC
Confidence 552 334554333335678899999 33333333345689999999999998874 566778999999998
Q ss_pred CcEEEEEeCCCcEEEEe
Q psy307 610 PSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 610 ~~~l~s~s~Dg~I~iww 626 (1019)
.++++...+++|.+|.
T Consensus 304 -~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 304 -TVYIGDAHTNTVWKFT 319 (329)
T ss_dssp -EEEEEESSSCCEEEEE
T ss_pred -CEEEEECCCCEEEEEe
Confidence 7889999999997763
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=3e-13 Score=153.95 Aligned_cols=269 Identities=11% Similarity=0.102 Sum_probs=176.2
Q ss_pred CCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEee----------CCCeEEEEecCCCcEEEEEe
Q psy307 306 HDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCS----------MDCRVKLWEVYKERRCVRTY 375 (1019)
Q Consensus 306 ~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs----------~Dg~I~IWdl~~~~~~~~~~ 375 (1019)
.|+.|.+|+... .+.+.++..+..+ .++|+|+ +++|++++ .++.|.+||+. ..+.+..+
T Consensus 29 ~d~~v~v~D~~t-------~~~~~~i~~g~~p--~i~~spd-g~~lyv~~~~~~~~~~g~~~~~v~v~d~~-t~~~~~~i 97 (361)
T 2oiz_A 29 TESRVHVYDYTN-------GKFLGMVPTAFNG--HVQVSND-GKKIYTMTTYHERITRGKRSDVVEVWDAD-KLTFEKEI 97 (361)
T ss_dssp GGCEEEEEETTT-------CCEEEEEECCEEE--EEEECTT-SSEEEEEEEEETTSSSSCEEEEEEEEETT-TCCEEEEE
T ss_pred ccCeEEEEECCC-------CeEEEEecCCCCC--ceEECCC-CCEEEEEEecccccccCCCCCEEEEEECc-CCcEEEEE
Confidence 367888997542 2455677776655 8999996 67777765 36789999984 45556655
Q ss_pred ccc------CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC--CCcEEEEEccCCCeEEEE-EccccccEeEEEEec
Q psy307 376 YGH------RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM--DCRVKLWEVYKEHRCVRT-YYGHRQAVRDICFNN 446 (1019)
Q Consensus 376 ~gh------~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~--Dg~I~IWDl~~~~~~~~~-l~~H~~~V~sl~fsp 446 (1019)
... ......++++|+| ++|+++.. ++.|.+||+. ..+.+.. +.. .+ ...+.+.|
T Consensus 98 ~~~~~~~~~g~~p~~i~~spdg--------------~~l~v~n~~~~~~v~v~d~~-~~~~~~~~i~~-~~-~~~v~~~p 160 (361)
T 2oiz_A 98 SLPPKRVQGLNYDGLFRQTTDG--------------KFIVLQNASPATSIGIVDVA-KGDYVEDVTAA-AG-CWSVIPQP 160 (361)
T ss_dssp EECTTBCCBCCCGGGEEECTTS--------------SEEEEEEESSSEEEEEEETT-TTEEEEEEGGG-TT-EEEEEECT
T ss_pred EcCccccccCCCcceEEECCCC--------------CEEEEECCCCCCeEEEEECC-CCcEEEEEecC-CC-cceeEEcC
Confidence 432 3456788999998 56766653 6899999994 5566665 432 22 22346777
Q ss_pred CC-CEEEEEEcCCeEEEEECCC-CceEEEEe------cCCceEEEEEecCCCe----------eeeccCCCceeeeC---
Q psy307 447 TG-TNFISAGYDRYLKLWDTES-GECISRFT------SRKVAYCVKFHPDEDK----------QHLDIPVDMKYIAD--- 505 (1019)
Q Consensus 447 dg-~~l~S~s~Dg~I~lWDl~t-~~~i~~~~------~~~~v~~v~~~p~~~~----------~~~~~~~~~~~i~~--- 505 (1019)
++ ..+++.+.||.+.+|++.. ++...... ....+..+.+.|++.. ..++.......+..
T Consensus 161 ~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~ 240 (361)
T 2oiz_A 161 NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWS 240 (361)
T ss_dssp TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEE
T ss_pred CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceeccccc
Confidence 76 6788899999999999865 55542221 1111111111222221 11222111000000
Q ss_pred -C---------CCCcccEEEEcCCCCEEEEEec-----------CCeEEEEEccCcccccceeEEeccccccceEEEEEc
Q psy307 506 -P---------TMHSMPAVTSSPNNKWLACQSM-----------DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564 (1019)
Q Consensus 506 -~---------~~~~i~~v~~spdg~~Lasgs~-----------Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fs 564 (1019)
. .......++++|+++.+++... .+.|.+||+.+. +.+..+..+ . +.+++|+
T Consensus 241 ~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---~~v~~i~~~---~-p~~ia~s 313 (361)
T 2oiz_A 241 LLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---QRVARIPGR---D-ALSMTID 313 (361)
T ss_dssp SCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---EEEEEEECT---T-CCEEEEE
T ss_pred ccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---cEEEEEecC---C-eeEEEEC
Confidence 0 0011223789999888777643 358999999887 345666655 3 7789999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCC--ceeeeeeccCCCEEEEEEcCCCC
Q psy307 565 PDMSYLISGDADGKCYIWDWKTT--KLFKKWKAHDGVCISTLWHPHEP 610 (1019)
Q Consensus 565 pdg~~Lasgs~DG~I~IWDl~t~--~~l~~l~~h~~~V~sl~~sp~~~ 610 (1019)
|||++|++++. +.|.+||..++ +.+.++..+......++++|+|.
T Consensus 314 pdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 314 QQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999998887 99999999999 99999876777789999999984
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.5e-14 Score=161.14 Aligned_cols=273 Identities=12% Similarity=0.006 Sum_probs=169.2
Q ss_pred ceeeeccCCC-----CeEEEEEcCCCCcEEEEeeCC--CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEe
Q psy307 327 QVHTWEGHTK-----GISAIRWFPKSAHLLLSCSMD--CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIR 399 (1019)
Q Consensus 327 ~i~~l~gH~~-----~V~~i~fspd~g~lLaSgs~D--g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~ 399 (1019)
.+..+..+.. .+.+++|+|++..++++...+ ..|.+||+. +++......++......+.|+|+|
T Consensus 22 ~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~spdg-------- 92 (396)
T 3c5m_A 22 KVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLE-TQQAVQLTEGKGDNTFGGFISTDE-------- 92 (396)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETT-TTEEEECCCSSCBCTTTCEECTTS--------
T ss_pred ceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECC-CCcEEEeecCCCCccccceECCCC--------
Confidence 3444544433 378899999744444444443 468888884 444433333333223347888888
Q ss_pred ecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeE-------------------EEEecCCCEEEEE-----E
Q psy307 400 WFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRD-------------------ICFNNTGTNFISA-----G 455 (1019)
Q Consensus 400 ~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~s-------------------l~fspdg~~l~S~-----s 455 (1019)
+.|+.++.++.|++||+. ++........+...... +.|+|+++.++.+ .
T Consensus 93 ------~~l~~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~ 165 (396)
T 3c5m_A 93 ------RAFFYVKNELNLMKVDLE-TLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTN 165 (396)
T ss_dssp ------SEEEEEETTTEEEEEETT-TCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTC
T ss_pred ------CEEEEEEcCCcEEEEECC-CCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCC
Confidence 678888888899999984 44444444444433222 3567777765544 3
Q ss_pred cCCeEEEEECCCCceEEEEecCCceEEEEEec-CCCeeeeccCC-------Cce----------eeeCCC-CCcccEEEE
Q psy307 456 YDRYLKLWDTESGECISRFTSRKVAYCVKFHP-DEDKQHLDIPV-------DMK----------YIADPT-MHSMPAVTS 516 (1019)
Q Consensus 456 ~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p-~~~~~~~~~~~-------~~~----------~i~~~~-~~~i~~v~~ 516 (1019)
.+..|.+||+.+++..........+..+.|+| ++..+++.... ... .+.... ...+..++|
T Consensus 166 ~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 245 (396)
T 3c5m_A 166 PTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFW 245 (396)
T ss_dssp CCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEE
T ss_pred CcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEE
Confidence 56789999999998776666667788899999 66544332110 111 111110 123566899
Q ss_pred cCCCCEEEEEecC-----CeEEEEEccCcccccceeEEeccccccceEEEEEcC-CCCEEEEEe----------------
Q psy307 517 SPNNKWLACQSMD-----NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP-DMSYLISGD---------------- 574 (1019)
Q Consensus 517 spdg~~Lasgs~D-----g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp-dg~~Lasgs---------------- 574 (1019)
+|+|++|+..+.+ +.|++||+.++... .+.... + .. +.|+| ||+++++++
T Consensus 246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~----~l~~~~--~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~ 317 (396)
T 3c5m_A 246 IPDGSAMAYVSYFKGQTDRVIYKANPETLENE----EVMVMP--P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIE 317 (396)
T ss_dssp CTTSSCEEEEEEETTTCCEEEEEECTTTCCEE----EEEECC--S-EE-EEEECSSSSEEEEEECCC----------CCC
T ss_pred CCCCCEEEEEecCCCCccceEEEEECCCCCeE----EeeeCC--C-CC-CCccCCCCceEEEecCCcceeeccccccccC
Confidence 9999988877654 45999999765321 111111 1 22 88999 999888754
Q ss_pred CCCeEEEEeCCCCceeeeeeccCC-----------CEEEEEEcCCCCcEEEEEeCCCcEEE
Q psy307 575 ADGKCYIWDWKTTKLFKKWKAHDG-----------VCISTLWHPHEPSKVVTAGWDAATAK 624 (1019)
Q Consensus 575 ~DG~I~IWDl~t~~~l~~l~~h~~-----------~V~sl~~sp~~~~~l~s~s~Dg~I~i 624 (1019)
.++.|++||+.+++. ..+..+.. .+..++|+|++..+++++..++...+
T Consensus 318 ~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l 377 (396)
T 3c5m_A 318 NDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAI 377 (396)
T ss_dssp CCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEE
T ss_pred CCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceE
Confidence 347899999988775 34554544 25678899998544444444565543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=4e-14 Score=176.94 Aligned_cols=258 Identities=8% Similarity=0.040 Sum_probs=158.1
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCcc-----EeEEEEcCCCCceeEEEeecCCCCcEEEEE
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQA-----VRDICFNNTGTNFISAIRWFPKSAHLLLSC 411 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~-----V~~i~fspdg~~~vs~i~~~p~~~~~L~sg 411 (1019)
...+++|+|+ +.+++++ ||+|++||+. ++++...+.+|... ..++.||||| ++|+.+
T Consensus 18 ~~~~~~w~~d-g~~~~~~--~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Spdg--------------~~l~~~ 79 (740)
T 4a5s_A 18 KLYSLRWISD-HEYLYKQ--ENNILVFNAE-YGNSSVFLENSTFDEFGHSINDYSISPDG--------------QFILLE 79 (740)
T ss_dssp CCCCEEECSS-SEEEEEE--TTEEEEEETT-TCCEEEEECTTTTTTCCSCCCEEEECTTS--------------SEEEEE
T ss_pred cccccEECCC-CcEEEEc--CCcEEEEECC-CCceEEEEechhhhhhcccccceEECCCC--------------CEEEEE
Confidence 4567999996 6888886 9999999994 45556667777643 2347889988 566666
Q ss_pred eCC---------CcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCC--ce
Q psy307 412 SMD---------CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRK--VA 480 (1019)
Q Consensus 412 s~D---------g~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~--~v 480 (1019)
+.+ +.+.+||+. ++++ ..+..|.+.+...+|||||+.|+.+ .|+.|.+||+.++...+...... .+
T Consensus 80 ~~~~~~~r~~~~~~~~~~d~~-~~~~-~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~ 156 (740)
T 4a5s_A 80 YNYVKQWRHSYTASYDIYDLN-KRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII 156 (740)
T ss_dssp EEEEECSSSCEEEEEEEEETT-TTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred ECCeeeEEEccceEEEEEECC-CCcE-EEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccce
Confidence 665 567799994 4443 3467788889999999999999888 57899999999887554222111 11
Q ss_pred -----------------EEEEEecCCCeeeeccC----CCceeee---CC--CCCcccEEEEcCCCCEEEEEecCCeEEE
Q psy307 481 -----------------YCVKFHPDEDKQHLDIP----VDMKYIA---DP--TMHSMPAVTSSPNNKWLACQSMDNKILI 534 (1019)
Q Consensus 481 -----------------~~v~~~p~~~~~~~~~~----~~~~~i~---~~--~~~~i~~v~~spdg~~Lasgs~Dg~I~i 534 (1019)
..+.|+||+..+++... .....+. .. ....+..+.+.+.|.. ....+|.+
T Consensus 157 ~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~----~~~~~l~v 232 (740)
T 4a5s_A 157 YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAV----NPTVKFFV 232 (740)
T ss_dssp EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSC----CCEEEEEE
T ss_pred ecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCc----CCeeEEEE
Confidence 12555665554443110 0000000 00 1111222233333221 11126888
Q ss_pred EEccC---cccccceeEEe------ccccccceEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCc----e--eeee--
Q psy307 535 FSALN---RFKLNRKKTFE------GHMVAGYACSLDFSPDMSYLISGDA----DGKCYIWDWKTTK----L--FKKW-- 593 (1019)
Q Consensus 535 wd~~~---~~~~~~~~~l~------gh~~~~~V~~v~fspdg~~Lasgs~----DG~I~IWDl~t~~----~--l~~l-- 593 (1019)
||+.+ +.... ...+. ++. .++..++|||||++++.... +..|++||+.+++ + +..+
T Consensus 233 ~d~~~~~~~~~~~-~~~l~~~~~~~~~~--~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~ 309 (740)
T 4a5s_A 233 VNTDSLSSVTNAT-SIQITAPASMLIGD--HYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIE 309 (740)
T ss_dssp EETTSCCSSSCCC-EEEECCCHHHHTSC--EEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEE
T ss_pred EECCCCCCCCcce-EEEecCCccCCCCC--eEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeee
Confidence 99887 52111 12222 233 67899999999997665533 3479999999887 2 2222
Q ss_pred eccCCCEE-----EEEEcCCCCcEEEEEe-CCCcE
Q psy307 594 KAHDGVCI-----STLWHPHEPSKVVTAG-WDAAT 622 (1019)
Q Consensus 594 ~~h~~~V~-----sl~~sp~~~~~l~s~s-~Dg~I 622 (1019)
..|.+.|. ...|+|+|..+++..+ .+|.-
T Consensus 310 ~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~ 344 (740)
T 4a5s_A 310 MSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYR 344 (740)
T ss_dssp ECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCE
T ss_pred ccCCceEccCcCCCceEcCCCCEEEEEEEcCCCce
Confidence 45665444 7889999954442554 45543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5.5e-12 Score=140.80 Aligned_cols=267 Identities=8% Similarity=0.016 Sum_probs=176.4
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.++..+..++....+..++.|. ...+..+.+|...+.+++|+|+ +.+++++..++.|.+||... ++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-g~l~~~~~~~~~i~~~d~~~-~~~~ 79 (333)
T 2dg1_A 12 FYSGKSNSAVPIISESELQTIT----------AEPWLEISKKGLQLEGLNFDRQ-GQLFLLDVFEGNIFKINPET-KEIK 79 (333)
T ss_dssp CSCGGGGCSSCCCCGGGSCEEE----------CEEEEEEESSCCCEEEEEECTT-SCEEEEETTTCEEEEECTTT-CCEE
T ss_pred eecCCccceeEEeecccCcccc----------cceeEEEeccCccccCcEECCC-CCEEEEECCCCEEEEEeCCC-CcEE
Confidence 3455555566666777788872 1345667778888999999996 67888888999999999843 3433
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC----CcEEEEEccCCCeEEEEEc--cccccEeEEEEec
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD----CRVKLWEVYKEHRCVRTYY--GHRQAVRDICFNN 446 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D----g~I~IWDl~~~~~~~~~l~--~H~~~V~sl~fsp 446 (1019)
.....+...+.+++++++| .+++++..+ +.|.+||.... .....+. .+...+.+++++|
T Consensus 80 ~~~~~~~~~~~~i~~~~dg--------------~l~v~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~i~~d~ 144 (333)
T 2dg1_A 80 RPFVSHKANPAAIKIHKDG--------------RLFVCYLGDFKSTGGIFAATENGD-NLQDIIEDLSTAYCIDDMVFDS 144 (333)
T ss_dssp EEEECSSSSEEEEEECTTS--------------CEEEEECTTSSSCCEEEEECTTSC-SCEEEECSSSSCCCEEEEEECT
T ss_pred EEeeCCCCCcceEEECCCC--------------cEEEEeCCCCCCCceEEEEeCCCC-EEEEEEccCccCCcccceEECC
Confidence 3333566779999999888 566666666 68999998433 3322232 3456789999999
Q ss_pred CCCEEEEEEc------CCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC
Q psy307 447 TGTNFISAGY------DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN 520 (1019)
Q Consensus 447 dg~~l~S~s~------Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg 520 (1019)
+|+.+++... .+.|..||..+++....... ...+..++++|+|
T Consensus 145 ~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------------------------~~~~~~i~~~~dg 193 (333)
T 2dg1_A 145 KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN-------------------------------ISVANGIALSTDE 193 (333)
T ss_dssp TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE-------------------------------ESSEEEEEECTTS
T ss_pred CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC-------------------------------CCcccceEECCCC
Confidence 9987776653 24566666655443221110 0124567888998
Q ss_pred CEEE-EEecCCeEEEEEccC-cccccce--eEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc
Q psy307 521 KWLA-CQSMDNKILIFSALN-RFKLNRK--KTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH 596 (1019)
Q Consensus 521 ~~La-sgs~Dg~I~iwd~~~-~~~~~~~--~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h 596 (1019)
+.|+ +.+.++.|.+|++.. +...... ...........+..++++++|+++++...++.|.+||. +++.+..+..+
T Consensus 194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~ 272 (333)
T 2dg1_A 194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP 272 (333)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcC
Confidence 8654 445678999999863 2211111 01110011135778999999998888888899999998 57777777654
Q ss_pred CC------CEEEEEEcCCCCcEEEEEeCC
Q psy307 597 DG------VCISTLWHPHEPSKVVTAGWD 619 (1019)
Q Consensus 597 ~~------~V~sl~~sp~~~~~l~s~s~D 619 (1019)
.. .+.+++|+|++. .|+.++.+
T Consensus 273 ~~~~g~~~~~~~~~~~~dg~-~L~v~~~~ 300 (333)
T 2dg1_A 273 GRDEGHMLRSTHPQFIPGTN-QLIICSND 300 (333)
T ss_dssp TGGGTCSCBCCEEEECTTSC-EEEEEEEC
T ss_pred CCccccccCcceEEECCCCC-EEEEEeCc
Confidence 33 588999999874 45444444
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=6.3e-13 Score=151.22 Aligned_cols=249 Identities=12% Similarity=0.063 Sum_probs=158.4
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeee--ccCCCCeEEEEEcCCCCc--EEEEee-------------C
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTW--EGHTKGISAIRWFPKSAH--LLLSCS-------------M 356 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l--~gH~~~V~~i~fspd~g~--lLaSgs-------------~ 356 (1019)
++++|+.++++..+ .+.+|+.... .+..... ..+ +.+.+++|+|+ ++ ++++++ .
T Consensus 47 ~spdg~~l~~~~~~-~v~~~~~~~~------g~~~~~~~~~~~-g~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 47 FDHERKNIYGAAMK-KWSSFAVKSP------TEIVHEASHPIG-GHPRANDADTN-TRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp ECTTSSEEEEEEBT-EEEEEEEEET------TEEEEEEEEECC-SSGGGGCTTSC-CEEEEEEECSSTTCCEEEEEESSS
T ss_pred ECCCCCEEEEEccc-eEEEEEECCC------CCEEEeeEeecC-CCCccEEECCC-CCEEEEEEecCCcceeccceeecC
Confidence 57789988877777 8999986411 1122211 111 23667899997 55 455653 6
Q ss_pred CCeEEEEecCCCcEEEEEec----ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe-CCCcEEEEEccCCCeE--E
Q psy307 357 DCRVKLWEVYKERRCVRTYY----GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS-MDCRVKLWEVYKEHRC--V 429 (1019)
Q Consensus 357 Dg~I~IWdl~~~~~~~~~~~----gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs-~Dg~I~IWDl~~~~~~--~ 429 (1019)
+|.+.+|++...++....+. .+...+.+++|+|+| ++|+++. .++.|.+||+...++. +
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG--------------~~l~~~~~~~~~v~~~~~~~~g~~~~~ 183 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE--------------TYLYSADLTANKLWTHRKLASGEVELV 183 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS--------------SEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC--------------CEEEEEcCCCCEEEEEEECCCCCEEEe
Confidence 99999999964454443333 245678889999988 4566555 4689999999523333 2
Q ss_pred EEEc--cccccEeEEEEecCCCEEEEEEc-CCeEEEEECC--CCceEEEEecCCceEEEEEecCCCeeeeccCCCceeee
Q psy307 430 RTYY--GHRQAVRDICFNNTGTNFISAGY-DRYLKLWDTE--SGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIA 504 (1019)
Q Consensus 430 ~~l~--~H~~~V~sl~fspdg~~l~S~s~-Dg~I~lWDl~--t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~ 504 (1019)
..+. .|...+..++|+|+|+++++++. +++|.+|++. +++...... .+...|.+.
T Consensus 184 ~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~------~~~~~~~~~-------------- 243 (365)
T 1jof_A 184 GSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHH------SFPLIPPGI-------------- 243 (365)
T ss_dssp EEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE------EEESSCTTC--------------
T ss_pred eeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccc------eEEcCCCCc--------------
Confidence 3333 24667999999999999888775 6899999765 455422110 000011100
Q ss_pred CCCC------CcccEEE-EcCCCCEEEEEecC-C-----eEEEEEccCccccccee-EEeccccccceEEEEEcC---CC
Q psy307 505 DPTM------HSMPAVT-SSPNNKWLACQSMD-N-----KILIFSALNRFKLNRKK-TFEGHMVAGYACSLDFSP---DM 567 (1019)
Q Consensus 505 ~~~~------~~i~~v~-~spdg~~Lasgs~D-g-----~I~iwd~~~~~~~~~~~-~l~gh~~~~~V~~v~fsp---dg 567 (1019)
..+. ..+..++ |+|+|++|++++.+ + .|.+|++.....+.... ....+. ..+..++|+| ||
T Consensus 244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~--~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT--SGGHSNAVSPCPWSD 321 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS--CCTTCCCEEECTTCT
T ss_pred CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC--CCcccceecCCCcCC
Confidence 0001 1356788 99999998876643 3 89999986322221111 122222 2345689999 89
Q ss_pred CEEEEEeCC-CeEEEEeCCCC
Q psy307 568 SYLISGDAD-GKCYIWDWKTT 587 (1019)
Q Consensus 568 ~~Lasgs~D-G~I~IWDl~t~ 587 (1019)
++|++++.+ +.|.||++...
T Consensus 322 ~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEEEcCCCeEEEEEEchh
Confidence 999998865 89999998765
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-13 Score=166.19 Aligned_cols=271 Identities=8% Similarity=-0.042 Sum_probs=176.8
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEe--eCCCeEEEEecCCCcEEEEEecccCccEe---------EEEEc--CCCCce
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSC--SMDCRVKLWEVYKERRCVRTYYGHRQAVR---------DICFN--NTGTNF 394 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSg--s~Dg~I~IWdl~~~~~~~~~~~gh~~~V~---------~i~fs--pdg~~~ 394 (1019)
...+.+|...|..++|+++ ..+++++ +.++...||....++ ..+.+..|...+. ...|+ |||.
T Consensus 16 ~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~-- 91 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRRRADG-AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGG-- 91 (662)
T ss_dssp HHHHHHTCSCCEEEEEETT-EEEEEEEETTTTTEEEEEEECTTS-CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSS--
T ss_pred HHHHhhcCCccceeEEcCC-eEEEEecCcccCCcEEEEEECCCC-CcceeCCCCccccccccccCCccceeeeecCCC--
Confidence 3467889999999999985 5556666 568899999973333 3556666766665 45454 6663
Q ss_pred eEEEeecCCCCc-EEEEEeCCCcEEEEEccCCC-eEEEEEcc-----ccccEeEEEEecCCCEEEEEEcC----------
Q psy307 395 ISAIRWFPKSAH-LLLSCSMDCRVKLWEVYKEH-RCVRTYYG-----HRQAVRDICFNNTGTNFISAGYD---------- 457 (1019)
Q Consensus 395 vs~i~~~p~~~~-~L~sgs~Dg~I~IWDl~~~~-~~~~~l~~-----H~~~V~sl~fspdg~~l~S~s~D---------- 457 (1019)
. ++++...+..|.+|++...+ .....+.. |...+.+++|+|||+.|++++.|
T Consensus 92 -----------~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 92 -----------PLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp -----------CEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred -----------eEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 3 33333335666666663001 23444555 67789999999999999999887
Q ss_pred CeEEEEECCC------CceEEEE-ecCCceEEEEEecCCCeeeeccCC-----------------------CceeeeCCC
Q psy307 458 RYLKLWDTES------GECISRF-TSRKVAYCVKFHPDEDKQHLDIPV-----------------------DMKYIADPT 507 (1019)
Q Consensus 458 g~I~lWDl~t------~~~i~~~-~~~~~v~~v~~~p~~~~~~~~~~~-----------------------~~~~i~~~~ 507 (1019)
..|.+||+.+ +...... .....+..++|+||+..+++.... ....+...+
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~ 240 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP 240 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred eEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence 5899999998 6654444 344567788999999877652210 011122222
Q ss_pred CCcccEEEEcCCCCEEEEEecCC--eEEEEEccCcccccceeEEecccccc------ceEEEEEcCCCCEEEEEeCCCeE
Q psy307 508 MHSMPAVTSSPNNKWLACQSMDN--KILIFSALNRFKLNRKKTFEGHMVAG------YACSLDFSPDMSYLISGDADGKC 579 (1019)
Q Consensus 508 ~~~i~~v~~spdg~~Lasgs~Dg--~I~iwd~~~~~~~~~~~~l~gh~~~~------~V~~v~fspdg~~Lasgs~DG~I 579 (1019)
...+..+.|+|||+++++++.++ .|.+||+.++.. .....++.... .+..++|+|+++++++++. |.+
T Consensus 241 ~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~ 316 (662)
T 3azo_A 241 EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA---TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAA 316 (662)
T ss_dssp TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCE---EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSC
T ss_pred CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCce---eecccccccccCccccccCceEeEeCCCEEEEEEEc-Ccc
Confidence 45677899999999888888888 666666644421 11112221100 1456889999999999998 999
Q ss_pred EEE--eCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCC
Q psy307 580 YIW--DWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619 (1019)
Q Consensus 580 ~IW--Dl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~D 619 (1019)
+|| |+.+++ +..+..|.+.+..+ |++++..++++++..
T Consensus 317 ~l~~~d~~~~~-~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~ 356 (662)
T 3azo_A 317 VLGILDPESGE-LVDAAGPWTEWAAT-LTVSGTRAVGVAASP 356 (662)
T ss_dssp EEEEEETTTTE-EEECCSSCCEEEEE-EEEETTEEEEEEEET
T ss_pred EEEEEECCCCc-EEEecCCCCeEEEE-EecCCCEEEEEEcCC
Confidence 999 655555 67777787777766 244444455444433
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-12 Score=163.79 Aligned_cols=294 Identities=11% Similarity=0.012 Sum_probs=181.8
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCC-----eEEEEEcCCCCcEEEEeeCC---------C
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKG-----ISAIRWFPKSAHLLLSCSMD---------C 358 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~-----V~~i~fspd~g~lLaSgs~D---------g 358 (1019)
.+.++|+.++++ |+.|.+|+.... ++...+.+|... ...++|||| |+.|+.++.+ +
T Consensus 23 ~w~~dg~~~~~~--~~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Spd-g~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 23 RWISDHEYLYKQ--ENNILVFNAEYG-------NSSVFLENSTFDEFGHSINDYSISPD-GQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp EECSSSEEEEEE--TTEEEEEETTTC-------CEEEEECTTTTTTCCSCCCEEEECTT-SSEEEEEEEEEECSSSCEEE
T ss_pred EECCCCcEEEEc--CCcEEEEECCCC-------ceEEEEechhhhhhcccccceEECCC-CCEEEEEECCeeeEEEccce
Confidence 467788888776 899999987643 334556777643 244788997 7778887776 6
Q ss_pred eEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcccccc
Q psy307 359 RVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQA 438 (1019)
Q Consensus 359 ~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~ 438 (1019)
.+.+||+.+ +++ ..+..|...+...+||||| +.|+.+ .++.|++|++..+.....+..++...
T Consensus 93 ~~~~~d~~~-~~~-~~l~~~~~~~~~~~~SPdG--------------~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~ 155 (740)
T 4a5s_A 93 SYDIYDLNK-RQL-ITEERIPNNTQWVTWSPVG--------------HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDI 155 (740)
T ss_dssp EEEEEETTT-TEE-CCSSCCCTTEEEEEECSST--------------TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTT
T ss_pred EEEEEECCC-CcE-EEcccCCCcceeeEECCCC--------------CEEEEE-ECCeEEEEECCCCceEEEcCCCCccc
Confidence 677999944 443 4567788889999999999 455555 46899999985443222223333332
Q ss_pred E-----------------eEEEEecCCCEEEEEEcCC------------------------------------eEEEEEC
Q psy307 439 V-----------------RDICFNNTGTNFISAGYDR------------------------------------YLKLWDT 465 (1019)
Q Consensus 439 V-----------------~sl~fspdg~~l~S~s~Dg------------------------------------~I~lWDl 465 (1019)
+ .++.|||||++|+.++.|. +|.+||+
T Consensus 156 ~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~ 235 (740)
T 4a5s_A 156 IYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNT 235 (740)
T ss_dssp EEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEET
T ss_pred eecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEEC
Confidence 2 3489999999999886432 5888999
Q ss_pred CC---Cc--eEEEEe-------cCCceEEEEEecCCCeeeeccC--------------CCc---------eeeeCCCCCc
Q psy307 466 ES---GE--CISRFT-------SRKVAYCVKFHPDEDKQHLDIP--------------VDM---------KYIADPTMHS 510 (1019)
Q Consensus 466 ~t---~~--~i~~~~-------~~~~v~~v~~~p~~~~~~~~~~--------------~~~---------~~i~~~~~~~ 510 (1019)
.+ ++ ....+. ....+..++|+|++...+.... ... ..+...+...
T Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~ 315 (740)
T 4a5s_A 236 DSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGW 315 (740)
T ss_dssp TSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSC
T ss_pred CCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCce
Confidence 98 73 223333 3345788999999874333110 000 0111222333
Q ss_pred c-----cEEEEcCCCCEEE-EEec-CC--eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC-----
Q psy307 511 M-----PAVTSSPNNKWLA-CQSM-DN--KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD----- 576 (1019)
Q Consensus 511 i-----~~v~~spdg~~La-sgs~-Dg--~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D----- 576 (1019)
+ ....|+|||+.|+ ..+. +| .|++||+.++.. ..+.... ..+..+. .+|++.|+..+..
T Consensus 316 v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~----~~lT~g~--~~v~~~~-~~d~~~i~f~~~~~~~~~ 388 (740)
T 4a5s_A 316 VGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC----TFITKGT--WEVIGIE-ALTSDYLYYISNEYKGMP 388 (740)
T ss_dssp SSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC----EESCCSS--SCEEEEE-EECSSEEEEEESCGGGCT
T ss_pred EccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce----EecccCC--EEEEEEE-EEeCCEEEEEEecCCCCC
Confidence 3 3688999999887 6653 33 688888876522 2222221 2344443 2446655544332
Q ss_pred C--eEEEEeCCCCceeeeeec----cCCCEEEEEEcCCCCcEEEEEeCCC
Q psy307 577 G--KCYIWDWKTTKLFKKWKA----HDGVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 577 G--~I~IWDl~t~~~l~~l~~----h~~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
+ .|+..++..+.....+.. ....+..+.|+|++..++++.+..+
T Consensus 389 ~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~ 438 (740)
T 4a5s_A 389 GGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPG 438 (740)
T ss_dssp TCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBS
T ss_pred ceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCC
Confidence 2 455556655544333432 2356789999999965566655433
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=7e-12 Score=136.81 Aligned_cols=235 Identities=13% Similarity=0.207 Sum_probs=165.2
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeee------ccCCCCeEEEEEcCCCCcEEEEeeC-CCeEEEEecC
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTW------EGHTKGISAIRWFPKSAHLLLSCSM-DCRVKLWEVY 366 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l------~gH~~~V~~i~fspd~g~lLaSgs~-Dg~I~IWdl~ 366 (1019)
.+++|+.+++...++.|.+|+.... .+..+ .+|...+.++++.+.++.++++... ++.|.+||.
T Consensus 37 ~~~~g~l~v~~~~~~~i~~~d~~g~--------~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~- 107 (286)
T 1q7f_A 37 VNAQNDIIVADTNNHRIQIFDKEGR--------FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ- 107 (286)
T ss_dssp ECTTCCEEEEEGGGTEEEEECTTSC--------EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred ECCCCCEEEEECCCCEEEEECCCCc--------EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-
Confidence 4567888888888899999975522 22333 2456689999995435777766643 899999995
Q ss_pred CCcEEEEEec-ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEc--cccccEeEEE
Q psy307 367 KERRCVRTYY-GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYY--GHRQAVRDIC 443 (1019)
Q Consensus 367 ~~~~~~~~~~-gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~--~H~~~V~sl~ 443 (1019)
. ++.+..+. .+...+.+++++++| .++++...++.|.+||. .+..+..+. ++...+.+|+
T Consensus 108 ~-g~~~~~~~~~~~~~~~~i~~~~~g--------------~l~v~~~~~~~i~~~~~--~g~~~~~~~~~~~~~~p~~i~ 170 (286)
T 1q7f_A 108 Y-GQFVRKFGATILQHPRGVTVDNKG--------------RIIVVECKVMRVIIFDQ--NGNVLHKFGCSKHLEFPNGVV 170 (286)
T ss_dssp T-SCEEEEECTTTCSCEEEEEECTTS--------------CEEEEETTTTEEEEECT--TSCEEEEEECTTTCSSEEEEE
T ss_pred C-CcEEEEecCccCCCceEEEEeCCC--------------CEEEEECCCCEEEEEcC--CCCEEEEeCCCCccCCcEEEE
Confidence 3 34455553 344568888888887 57777778899999996 334444443 4556789999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEE
Q psy307 444 FNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWL 523 (1019)
Q Consensus 444 fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~L 523 (1019)
++++|+.+++.+.++.|++||.. ++.+..+.... ....+..++++++|+++
T Consensus 171 ~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g----------------------------~~~~p~~i~~d~~G~l~ 221 (286)
T 1q7f_A 171 VNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEG----------------------------ITNYPIGVGINSNGEIL 221 (286)
T ss_dssp ECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTT----------------------------TSCSEEEEEECTTCCEE
T ss_pred ECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCC----------------------------ccCCCcEEEECCCCCEE
Confidence 99999877777789999999974 44444432210 11335578889999888
Q ss_pred EEEecCC-eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy307 524 ACQSMDN-KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK 588 (1019)
Q Consensus 524 asgs~Dg-~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~ 588 (1019)
++...++ .|.+|+.... .+..+..+.....+.+++++|+|+++++ +.|++|++|++....
T Consensus 222 v~~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 222 IADNHNNFNLTIFTQDGQ----LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEECSSSCEEEEECTTSC----EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred EEeCCCCEEEEEECCCCC----EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 8888776 9999996542 2344444432345778999999987777 679999999986543
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=4.1e-12 Score=144.55 Aligned_cols=256 Identities=9% Similarity=0.031 Sum_probs=168.8
Q ss_pred CCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe----------CCCcEEEEEccCC
Q psy307 356 MDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS----------MDCRVKLWEVYKE 425 (1019)
Q Consensus 356 ~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs----------~Dg~I~IWDl~~~ 425 (1019)
.|+.|.+||. ..++.+..+..+..+ .++|+||| +++++++ .++.|.+||+ ..
T Consensus 29 ~d~~v~v~D~-~t~~~~~~i~~g~~p--~i~~spdg--------------~~lyv~~~~~~~~~~g~~~~~v~v~d~-~t 90 (361)
T 2oiz_A 29 TESRVHVYDY-TNGKFLGMVPTAFNG--HVQVSNDG--------------KKIYTMTTYHERITRGKRSDVVEVWDA-DK 90 (361)
T ss_dssp GGCEEEEEET-TTCCEEEEEECCEEE--EEEECTTS--------------SEEEEEEEEETTSSSSCEEEEEEEEET-TT
T ss_pred ccCeEEEEEC-CCCeEEEEecCCCCC--ceEECCCC--------------CEEEEEEecccccccCCCCCEEEEEEC-cC
Confidence 4789999998 445666777766655 89999999 4666654 3678999998 45
Q ss_pred CeEEEEEcc------ccccEeEEEEecCCCEEEEEEc--CCeEEEEECCCCceEEE-EecCCc----------eEEEEEe
Q psy307 426 HRCVRTYYG------HRQAVRDICFNNTGTNFISAGY--DRYLKLWDTESGECISR-FTSRKV----------AYCVKFH 486 (1019)
Q Consensus 426 ~~~~~~l~~------H~~~V~sl~fspdg~~l~S~s~--Dg~I~lWDl~t~~~i~~-~~~~~~----------v~~v~~~ 486 (1019)
.+.+..+.. +......++++|+|++++++.. +++|.+||+.+++.+.. +..... ..-+.++
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~ 170 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTIC 170 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEE
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEEC
Confidence 555555543 2345677899999999998875 58999999999998887 554322 1234555
Q ss_pred cCCCeeeeccCCCceee--------eCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccc-----
Q psy307 487 PDEDKQHLDIPVDMKYI--------ADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHM----- 553 (1019)
Q Consensus 487 p~~~~~~~~~~~~~~~i--------~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~----- 553 (1019)
+++....+......+.. ....... ..+..++++..++..+.++.|.++|+..... .....+.-..
T Consensus 171 ~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-~~~~~~~~~~~~~~~ 248 (361)
T 2oiz_A 171 GDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEV-KVDGPWSLLNDEDKA 248 (361)
T ss_dssp TTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSC-EEEEEEESCCHHHHH
T ss_pred CCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCc-eecccccccCccccc
Confidence 66655444332211111 1111111 1233467777777888899999999865321 1111111000
Q ss_pred c---ccceEEEEEcCCCCEEEEEeC-----------CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCC
Q psy307 554 V---AGYACSLDFSPDMSYLISGDA-----------DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619 (1019)
Q Consensus 554 ~---~~~V~~v~fspdg~~Lasgs~-----------DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~D 619 (1019)
. ......++|+||++.++++.. .+.|.+||+.+++.+.++..+. +.+++|+|++. ++++++.
T Consensus 249 ~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~-~l~v~n~- 324 (361)
T 2oiz_A 249 KNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRN-LMLTLDG- 324 (361)
T ss_dssp TTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTT-EEEEECS-
T ss_pred cccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCC-EEEEeCC-
Confidence 0 000112689999888776543 3589999999999999999877 89999999995 7777776
Q ss_pred CcEEEEecccee--eeeee
Q psy307 620 AATAKVQDANIV--KIAVE 636 (1019)
Q Consensus 620 g~I~iwwd~~i~--ki~~e 636 (1019)
++|.+| |.... +....
T Consensus 325 ~~v~v~-D~~t~~l~~~~~ 342 (361)
T 2oiz_A 325 GNVNVY-DISQPEPKLLRT 342 (361)
T ss_dssp SCEEEE-ECSSSSCEEEEE
T ss_pred CeEEEE-ECCCCcceeeEE
Confidence 888665 66555 54433
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.8e-12 Score=136.99 Aligned_cols=240 Identities=11% Similarity=0.070 Sum_probs=165.2
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
..+..+..+.....+++|+|++..+++++..++.|.+|+.... ...+..+...+.+++++++|
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg-------------- 80 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQG-------------- 80 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTC--------------
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCC--------------
Confidence 3445666677788999999975458999999999999998543 55666677889999999988
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEccc----cccEeEEEEecCCCEEEEEEc-----------------CCeEEEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGH----RQAVRDICFNNTGTNFISAGY-----------------DRYLKLWD 464 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H----~~~V~sl~fspdg~~l~S~s~-----------------Dg~I~lWD 464 (1019)
.++++...++.|.+||... ++........ ...+.+++++|+|+.+++.+. .+.|..+|
T Consensus 81 ~l~v~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~ 159 (296)
T 3e5z_A 81 HLIACSHGLRRLERQREPG-GEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA 159 (296)
T ss_dssp CEEEEETTTTEEEEECSTT-CCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred cEEEEecCCCeEEEEcCCC-CcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEEC
Confidence 5666666778999999843 3333322221 235678999999998887431 23444444
Q ss_pred CCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccc-
Q psy307 465 TESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKL- 543 (1019)
Q Consensus 465 l~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~- 543 (1019)
.. ++...... .......++++|+|+.+++.+.++.|.+|++.....+
T Consensus 160 ~~-g~~~~~~~-------------------------------~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~ 207 (296)
T 3e5z_A 160 PD-GTLSAPIR-------------------------------DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE 207 (296)
T ss_dssp TT-SCEEEEEC-------------------------------CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE
T ss_pred CC-CCEEEeec-------------------------------CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc
Confidence 43 33211111 1123456888999998877778899999998622222
Q ss_pred cceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEE-cCCCCcEEEEEeCCCcE
Q psy307 544 NRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLW-HPHEPSKVVTAGWDAAT 622 (1019)
Q Consensus 544 ~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~-sp~~~~~l~s~s~Dg~I 622 (1019)
.....+.. ..+.+.+++++++|+++++. ++.|.+||.. ++.+..+..+.. +.+++| .|++ ..|+.++.++..
T Consensus 208 ~~~~~~~~--~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~-~~L~v~t~~~l~ 280 (296)
T 3e5z_A 208 YQGVHFTV--EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEG-RTLYMTVSTEFW 280 (296)
T ss_dssp EEEEEECC--SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTS-CEEEEEETTEEE
T ss_pred CCCeEeeC--CCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCC-CEEEEEcCCeEE
Confidence 11223322 22456789999999977666 7889999986 888888888777 899999 5776 467777766533
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-12 Score=146.47 Aligned_cols=278 Identities=12% Similarity=0.037 Sum_probs=168.3
Q ss_pred CCCCCCCCeeeeCCC-CCceeee--cCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC
Q psy307 292 DPTDYQGRSFLHPPH-DVGTNLR--SDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE 368 (1019)
Q Consensus 292 ~~~~~~gr~~~~~~~-D~~v~lw--~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~ 368 (1019)
..++++|+.++.... ++...|| +... .+......+|...+.+++|+|+ +..|+.++.++.|.+||+..
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~-------g~~~~lt~~~~~~~~~~~~spd-g~~l~~~~~~~~l~~~d~~~- 111 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNT-------QVATQLTEGRGDNTFGGFLSPD-DDALFYVKDGRNLMRVDLAT- 111 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTT-------CEEEECCCSSCBCSSSCEECTT-SSEEEEEETTTEEEEEETTT-
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCC-------CceEEeeeCCCCCccceEEcCC-CCEEEEEeCCCeEEEEECCC-
Confidence 568999999888776 6654444 4432 2334445666666667889996 78888888999999999954
Q ss_pred cEEEEEecccCccEeEEE--EcCCCCceeEEEe----ecCCCCcE----EEEEeCCCcEEEEEccCCCeEEEEEcccccc
Q psy307 369 RRCVRTYYGHRQAVRDIC--FNNTGTNFISAIR----WFPKSAHL----LLSCSMDCRVKLWEVYKEHRCVRTYYGHRQA 438 (1019)
Q Consensus 369 ~~~~~~~~gh~~~V~~i~--fspdg~~~vs~i~----~~p~~~~~----L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~ 438 (1019)
++....+..+...+.... +++++..++.... |.|..... ++....++.|.+||+..+ . ...+..+...
T Consensus 112 g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g-~-~~~l~~~~~~ 189 (388)
T 3pe7_A 112 LEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG-E-STVILQENQW 189 (388)
T ss_dssp CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC-C-EEEEEEESSC
T ss_pred CcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC-c-eEEeecCCcc
Confidence 444444555555554443 3777753221100 00000000 001234578999998543 3 3444566778
Q ss_pred EeEEEEec-CCCEEEEEEcC------CeEEEEECCCCceEEEEecC--CceEEEEEecCCCeeeeccC---CC--ceeee
Q psy307 439 VRDICFNN-TGTNFISAGYD------RYLKLWDTESGECISRFTSR--KVAYCVKFHPDEDKQHLDIP---VD--MKYIA 504 (1019)
Q Consensus 439 V~sl~fsp-dg~~l~S~s~D------g~I~lWDl~t~~~i~~~~~~--~~v~~v~~~p~~~~~~~~~~---~~--~~~i~ 504 (1019)
+..++|+| +|+.|+.++.+ ..|.++|+.++......... ..+....|+|++..+++... .. ..++.
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 269 (388)
T 3pe7_A 190 LGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSA 269 (388)
T ss_dssp EEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEE
T ss_pred ccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEE
Confidence 89999999 99998887764 37888888766544333333 24677899999986644111 00 12222
Q ss_pred CCCCCc----------------ccEEEEcCCCCEEEEE---------ecCCeEEEEEccCcccccceeEEeccccc----
Q psy307 505 DPTMHS----------------MPAVTSSPNNKWLACQ---------SMDNKILIFSALNRFKLNRKKTFEGHMVA---- 555 (1019)
Q Consensus 505 ~~~~~~----------------i~~v~~spdg~~Lasg---------s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~---- 555 (1019)
+..... ...+.|+|+|+.|+.. ..+..|++||+.++. ...+..+...
T Consensus 270 d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~ 345 (388)
T 3pe7_A 270 DPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT----QHRVARHDTSWKVF 345 (388)
T ss_dssp CTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE----EEEEEECCCCCCCB
T ss_pred ecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc----eEEeccccCccccc
Confidence 222211 2223689999988864 446699999998753 2334333310
Q ss_pred -----cceEEEEEcCCCCEEEEEe-CCCeEEEEeC
Q psy307 556 -----GYACSLDFSPDMSYLISGD-ADGKCYIWDW 584 (1019)
Q Consensus 556 -----~~V~~v~fspdg~~Lasgs-~DG~I~IWDl 584 (1019)
..+.+++|+|||++|+.++ .+|...||.+
T Consensus 346 ~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 346 EGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp TTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 0366789999999887665 4666666643
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.8e-12 Score=141.76 Aligned_cols=240 Identities=8% Similarity=0.054 Sum_probs=166.3
Q ss_pred CCCCCCCeeeeCCCCC------------------------ceeeecCCCCCCccCCccceeeec-cCCCCeEEEEEcCCC
Q psy307 293 PTDYQGRSFLHPPHDV------------------------GTNLRSDTPPDRCFLPKTQVHTWE-GHTKGISAIRWFPKS 347 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~------------------------~v~lw~~~~~~~~~lp~~~i~~l~-gH~~~V~~i~fspd~ 347 (1019)
+.+++|+.+++...+. .|.+|+... .+.+..+. ++-..+..++++|+
T Consensus 30 a~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-------g~~~~~~~~~~~~~p~gia~d~~- 101 (329)
T 3fvz_A 30 ALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN-------AEILQSSGKNLFYLPHGLSIDTD- 101 (329)
T ss_dssp EECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT-------CCEEEEECTTTCSSEEEEEECTT-
T ss_pred EECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC-------CeEEeccCCCccCCceEEEECCC-
Confidence 3567788888776663 566665432 22233333 45568999999996
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEe---------cccCccEeEEEEcC-CCCceeEEEeecCCCCcEEEEEe-CCCc
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTY---------YGHRQAVRDICFNN-TGTNFISAIRWFPKSAHLLLSCS-MDCR 416 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~---------~gh~~~V~~i~fsp-dg~~~vs~i~~~p~~~~~L~sgs-~Dg~ 416 (1019)
+.++++.+.++.|++||.......+..+ .++-.....|+++| ++ .++++.+ .++.
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g--------------~lyv~d~~~~~~ 167 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG--------------AVFVSDGYCNSR 167 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC--------------CEEEEECSSCCE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC--------------eEEEEeCCCCCe
Confidence 6788888899999999984432244444 23444677788887 55 6777776 6999
Q ss_pred EEEEEccCCCeEEEEEcc----------ccccEeEEEEecC-CCEEEEEEcCCeEEEEECCCCceEEEEecC---CceEE
Q psy307 417 VKLWEVYKEHRCVRTYYG----------HRQAVRDICFNNT-GTNFISAGYDRYLKLWDTESGECISRFTSR---KVAYC 482 (1019)
Q Consensus 417 I~IWDl~~~~~~~~~l~~----------H~~~V~sl~fspd-g~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~---~~v~~ 482 (1019)
|++|+. .+..+..+.. +-.....|+++|+ +..+++...++.|++||..+|+.+..+... ..+..
T Consensus 168 I~~~~~--~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~ 245 (329)
T 3fvz_A 168 IVQFSP--SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFA 245 (329)
T ss_dssp EEEECT--TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEE
T ss_pred EEEEcC--CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcce
Confidence 999994 4555555532 3344899999998 666777778899999999989988877532 34555
Q ss_pred EEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEE---eccccccceE
Q psy307 483 VKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTF---EGHMVAGYAC 559 (1019)
Q Consensus 483 v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l---~gh~~~~~V~ 559 (1019)
++++| + +.+..+|+.+++.+.++.|.+|+..++.. +..+ .++. ..+.
T Consensus 246 ~~~~p-g------------------------~~~~~~g~~~v~~~~~~~v~~~~~~~g~~---~~~~~~~~~~~--~~p~ 295 (329)
T 3fvz_A 246 ISYIP-G------------------------FLFAVNGKPYFGDQEPVQGFVMNFSSGEI---IDVFKPVRKHF--DMPH 295 (329)
T ss_dssp EEEET-T------------------------EEEEEECCCCTTCSCCCCEEEEETTTCCE---EEEECCSSSCC--SSEE
T ss_pred eeecC-C------------------------EEEEeCCCEEeccCCCcEEEEEEcCCCeE---EEEEcCCCCcc--CCee
Confidence 55554 1 12222455555555677999999887633 3444 2333 5588
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy307 560 SLDFSPDMSYLISGDADGKCYIWDWKT 586 (1019)
Q Consensus 560 ~v~fspdg~~Lasgs~DG~I~IWDl~t 586 (1019)
.++++|+|.++++...+++|++|++..
T Consensus 296 ~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 296 DIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 999999998888888899999999754
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-11 Score=138.16 Aligned_cols=248 Identities=10% Similarity=0.016 Sum_probs=158.3
Q ss_pred CeEEEEEcCCCCcEEEEe--------eCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEE
Q psy307 337 GISAIRWFPKSAHLLLSC--------SMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSg--------s~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L 408 (1019)
.+..+++ ++..++++. +.++.|.+||+... +. +.+ ..+..++|+|||. .|
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~-~~-~~l----~~~~~~~~SpDg~--------------~l 73 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNN-AR-RFI----ENATMPRISPDGK--------------KI 73 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTC-CE-EEE----ESCEEEEECTTSS--------------EE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCC-ce-EEc----ccCCCeEECCCCC--------------EE
Confidence 5667777 444444432 23678999998543 32 223 4578889999884 45
Q ss_pred EEEeCC---Cc--EEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcC--------------------------
Q psy307 409 LSCSMD---CR--VKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD-------------------------- 457 (1019)
Q Consensus 409 ~sgs~D---g~--I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~D-------------------------- 457 (1019)
+.++.+ +. |.+||+ .++........+ . +.+++|+|+|+.|+.++.+
T Consensus 74 a~~~~~~~~~~~~l~~~~~-~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (347)
T 2gop_A 74 AFMRANEEKKVSEIWVADL-ETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGE 150 (347)
T ss_dssp EEEEEETTTTEEEEEEEET-TTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------C
T ss_pred EEEEeccCCCcceEEEEEC-CCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCc
Confidence 544433 33 777777 345544444333 3 9999999999998888743
Q ss_pred -CeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCC---------CceeeeCCCCCc-------ccEEEEcCCC
Q psy307 458 -RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPV---------DMKYIADPTMHS-------MPAVTSSPNN 520 (1019)
Q Consensus 458 -g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~---------~~~~i~~~~~~~-------i~~v~~spdg 520 (1019)
..|.+||+.+++.+..+... .+..+.|+|++ ..+..... ...+..+ ... .....++|+|
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~spdg 226 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEKVSFYAVDSDG 226 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEEESEEEEEECS
T ss_pred cceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccCcceeeECCCC
Confidence 57999999998874444443 77889999998 43332110 0111111 111 1223349999
Q ss_pred CEEEEEecC--------CeEEEEEccCcccccceeEEeccccccceEE-EEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q psy307 521 KWLACQSMD--------NKILIFSALNRFKLNRKKTFEGHMVAGYACS-LDFSPDMSYLISGDADGKCYIWDWKTTKLFK 591 (1019)
Q Consensus 521 ~~Lasgs~D--------g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~-v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~ 591 (1019)
++|+.++.+ ..|.+|| ++. ......++. ..+.. +.|+ || ++++++.+|.++|| +.+++..
T Consensus 227 ~~l~~~~~~~~~~~~~~~~l~~~d--~~~---~~~l~~~~~--~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~- 295 (347)
T 2gop_A 227 ERILLYGKPEKKYMSEHNKLYIYD--GKE---VMGILDEVD--RGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK- 295 (347)
T ss_dssp SCEEEEECCSSSCCCSSCEEEEEC--SSC---EEESSTTCC--SEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-
T ss_pred CEEEEEEccccCCccccceEEEEC--CCc---eEeccccCC--cccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-
Confidence 999887754 3688888 331 112222332 45665 8999 98 99999999999999 8766653
Q ss_pred eeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEec
Q psy307 592 KWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQD 627 (1019)
Q Consensus 592 ~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd 627 (1019)
.+..+.+.|.+++|+| .++++++.++....+|.
T Consensus 296 ~~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~ 328 (347)
T 2gop_A 296 PIAKGRHWIMGFDVDE---IVVYLKETATRLRELFT 328 (347)
T ss_dssp EEECSSSEEEEEEESS---SEEEEEECSSSCCEEEE
T ss_pred EEecCCCeEEeeeeeC---cEEEEEcCCCChHHheE
Confidence 4444577899999999 37777777776533333
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-12 Score=157.98 Aligned_cols=254 Identities=10% Similarity=0.011 Sum_probs=158.3
Q ss_pred CCCCe-eeeCCCCCceeeecCCCCCCccCCc-cceeeecc-----CCCCeEEEEEcCCCCcEEEEeeCC----------C
Q psy307 296 YQGRS-FLHPPHDVGTNLRSDTPPDRCFLPK-TQVHTWEG-----HTKGISAIRWFPKSAHLLLSCSMD----------C 358 (1019)
Q Consensus 296 ~~gr~-~~~~~~D~~v~lw~~~~~~~~~lp~-~~i~~l~g-----H~~~V~~i~fspd~g~lLaSgs~D----------g 358 (1019)
++|+. ++.... ....||...... +. .....+.. |...+.+++|+|| |+.|++++.| .
T Consensus 88 PDg~~~la~~~~-~~~~l~~~~~~~----~g~~~~~~l~~~~~~~~~~~~~~~~~spD-g~~l~~~~~~~~~~~~~~~~~ 161 (662)
T 3azo_A 88 PAGGPLLVFTHF-GDQRLYAFEPDA----PGGAVPRPLTPVSAVGGGLRWADPVLLPE-RGEVWCMAEEFTGEGPSDVRR 161 (662)
T ss_dssp SSSSCEEEEEBT-TTCCEEEECTTS----TTCCCCEECSCCCCSTTCEEEEEEEEETT-TTEEEEEEEEECSSSTTCEEE
T ss_pred cCCCeEEEEEEC-CCCeEEEEcCCC----CCCCCCEeccCCccCCCCccccCcEECCC-CCEEEEEEecccCCCCCCcee
Confidence 67887 554433 234444433210 01 12334555 6778999999997 6777777766 6
Q ss_pred eEEEEecCCC-----cEEEEEec-ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC--------CcEEEEEccC
Q psy307 359 RVKLWEVYKE-----RRCVRTYY-GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD--------CRVKLWEVYK 424 (1019)
Q Consensus 359 ~I~IWdl~~~-----~~~~~~~~-gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D--------g~I~IWDl~~ 424 (1019)
.|.+||+... +. ...+. .+...+..++|+||| +.|+.++.+ ..|.+||+..
T Consensus 162 ~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG--------------~~la~~~~~~~~~~~~~~~i~~~d~~~ 226 (662)
T 3azo_A 162 FLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDG--------------RQAVWLAWDHPRMPWEGTELKTARVTE 226 (662)
T ss_dssp EEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTS--------------SEEEEEEECTTCCTTTCEEEEEEEECT
T ss_pred EEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCC--------------CEEEEEECCCCCCCCCCcEEEEEEECC
Confidence 8999999541 33 34455 566788889999999 466655544 4799999963
Q ss_pred CC---eEEEEEccccccEeEEEEecCCCEEEEEEcCC--eEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCC
Q psy307 425 EH---RCVRTYYGHRQAVRDICFNNTGTNFISAGYDR--YLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVD 499 (1019)
Q Consensus 425 ~~---~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg--~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~ 499 (1019)
.+ .......+|...+..++|+|||+.+++++.|+ .|.+||+.+++.......+..+....|++
T Consensus 227 ~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~------------ 294 (662)
T 3azo_A 227 DGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTP------------ 294 (662)
T ss_dssp TSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCST------------
T ss_pred CCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccc------------
Confidence 44 55555566788999999999999777777788 67777776666543222221111111111
Q ss_pred ceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEc--cCcccccceeEEeccccccceEEE-EEcCCCCEEEEEeCC
Q psy307 500 MKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSA--LNRFKLNRKKTFEGHMVAGYACSL-DFSPDMSYLISGDAD 576 (1019)
Q Consensus 500 ~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~--~~~~~~~~~~~l~gh~~~~~V~~v-~fspdg~~Lasgs~D 576 (1019)
.+..++++|+++++++++. +.++||.+ .++ ....+..+. +.+..+ ++++++-++++++.+
T Consensus 295 ----------~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~----~~~~l~~~~--~~~~~~~s~~~~~~~~~~~~~~ 357 (662)
T 3azo_A 295 ----------GMRWFAPLANGLIAVVHGK-GAAVLGILDPESG----ELVDAAGPW--TEWAATLTVSGTRAVGVAASPR 357 (662)
T ss_dssp ----------TCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT----EEEECCSSC--CEEEEEEEEETTEEEEEEEETT
T ss_pred ----------cCceEeEeCCCEEEEEEEc-CccEEEEEECCCC----cEEEecCCC--CeEEEEEecCCCEEEEEEcCCC
Confidence 1346889999999999998 99999954 333 134555553 446655 444333344455555
Q ss_pred C--eEEEEeCCCCceeeeeeccCCC
Q psy307 577 G--KCYIWDWKTTKLFKKWKAHDGV 599 (1019)
Q Consensus 577 G--~I~IWDl~t~~~l~~l~~h~~~ 599 (1019)
. .|++||+.+++.......|...
T Consensus 358 ~~~~i~~~d~~~g~~~~l~~~~~~~ 382 (662)
T 3azo_A 358 TAYEVVELDTVTGRARTIGARHTDP 382 (662)
T ss_dssp EEEEEEEEETTTCCEEEEESCCCCS
T ss_pred CCCEEEEEECCCCceEEeecCCccc
Confidence 4 5666677777754433444433
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-11 Score=152.21 Aligned_cols=244 Identities=7% Similarity=-0.019 Sum_probs=162.5
Q ss_pred cCCCCeEEEEEcCCCCcEEEEeeC-CC----eEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 333 GHTKGISAIRWFPKSAHLLLSCSM-DC----RVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLaSgs~-Dg----~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
+|...+.+++|||| |++|+.++. +| .|++||+.+ ++.......+ ..+..++|+||| +.
T Consensus 122 ~~~~~~~~~~~SPD-g~~la~~~~~~G~~~~~i~v~d~~t-g~~~~~~~~~-~~~~~~~wspDg--------------~~ 184 (710)
T 2xdw_A 122 DGTVALRGYAFSED-GEYFAYGLSASGSDWVTIKFMKVDG-AKELPDVLER-VKFSCMAWTHDG--------------KG 184 (710)
T ss_dssp TSCEEEEEEEECTT-SSEEEEEEEETTCSCEEEEEEETTT-TEEEEEEEEE-ECSCCEEECTTS--------------SE
T ss_pred CCCEEEEEEEECCC-CCEEEEEEcCCCCceEEEEEEECCC-CCCCcccccC-cccceEEEEeCC--------------CE
Confidence 45557899999997 556655443 33 899999954 4444432222 226778899988 45
Q ss_pred EEEEeCCCc----------------EEEEEccCCC---eEEEEEccccccEeEEEEecCCCEEEEEEc-----CCeEEEE
Q psy307 408 LLSCSMDCR----------------VKLWEVYKEH---RCVRTYYGHRQAVRDICFNNTGTNFISAGY-----DRYLKLW 463 (1019)
Q Consensus 408 L~sgs~Dg~----------------I~IWDl~~~~---~~~~~l~~H~~~V~sl~fspdg~~l~S~s~-----Dg~I~lW 463 (1019)
|+.++.++. |++|++.+.. .++.....|...+.++.|+|||++|+.++. +..|.+|
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~ 264 (710)
T 2xdw_A 185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC 264 (710)
T ss_dssp EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred EEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEE
Confidence 666666554 9999995443 233333345667889999999999887775 5689999
Q ss_pred ECCC------Cc-eEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC----CeE
Q psy307 464 DTES------GE-CISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD----NKI 532 (1019)
Q Consensus 464 Dl~t------~~-~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D----g~I 532 (1019)
|+.+ +. ....+..+. ..+. ..++|+|+.|+..+.. +.|
T Consensus 265 d~~~~~~~~~~~~~~~~l~~~~------------------------------~~~~-~~~s~dg~~l~~~s~~~~~~~~l 313 (710)
T 2xdw_A 265 DLQQESNGITGILKWVKLIDNF------------------------------EGEY-DYVTNEGTVFTFKTNRHSPNYRL 313 (710)
T ss_dssp EGGGSSSSSCSSCCCEEEECSS------------------------------SSCE-EEEEEETTEEEEEECTTCTTCEE
T ss_pred ECcccccccCCccceEEeeCCC------------------------------CcEE-EEEeccCCEEEEEECCCCCCCEE
Confidence 9876 32 122222111 1111 2467788877776653 369
Q ss_pred EEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCe--EEEEeCCCCceeeeeeccCCCEEEEEEcCCCC
Q psy307 533 LIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGK--CYIWDWKTTKLFKKWKAHDGVCISTLWHPHEP 610 (1019)
Q Consensus 533 ~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~--I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~ 610 (1019)
.+||+.++.. .....+..+.....+..++|++++.+++++..||. |++||+.+++.+..+..+.+.+.++.++|++.
T Consensus 314 ~~~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~ 392 (710)
T 2xdw_A 314 INIDFTDPEE-SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT 392 (710)
T ss_dssp EEEETTSCCG-GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCS
T ss_pred EEEeCCCCCc-ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCC
Confidence 9999876531 12344555543235778999988888899988884 67778878888888888888899999999886
Q ss_pred cEEEEEeC---CCcEEEE
Q psy307 611 SKVVTAGW---DAATAKV 625 (1019)
Q Consensus 611 ~~l~s~s~---Dg~I~iw 625 (1019)
.++++.+. .++|..|
T Consensus 393 ~l~~~~ss~~~P~~i~~~ 410 (710)
T 2xdw_A 393 EIFYQFTSFLSPGIIYHC 410 (710)
T ss_dssp EEEEEEECSSCCCEEEEE
T ss_pred EEEEEEeCCCCCCEEEEE
Confidence 55555444 3456444
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.7e-14 Score=150.33 Aligned_cols=206 Identities=17% Similarity=0.185 Sum_probs=156.4
Q ss_pred cEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCC-CceeEEEeecCCCceEEe-------------
Q psy307 621 ATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSD-SEQYALQFSETNNKNYIT------------- 686 (1019)
Q Consensus 621 ~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~-~e~~al~~sd~~~~~~it------------- 686 (1019)
+|....|.+......-.....+.++.+++..++...+..+|..|..+. .+.|++++++++ .|++
T Consensus 19 ~vq~l~d~dpf~~~~~~ep~r~~l~~fd~~~pL~~~i~~v~~~~~~p~~~e~yaLQ~~~~~--~Yl~~~~~l~~q~de~~ 96 (339)
T 3dad_A 19 RVQYLEDTDPFASANFPEPRRAPTCSLDGALPLGAQIPAVHRLLGAPLKLEDSALQVSPSG--YYLDTELSLEEQREMLE 96 (339)
T ss_dssp EEEECCCSSTTSCCCCCSSSSCCEEEEETTSCGGGTHHHHHHHHTCSSCSSSEEEEETTTC--CBCCTTSCTTTTTTC--
T ss_pred EEEeecCCCccccCCCCCCCCCCceeccCcCCHHHHHHHHHHhccCCCcccceeeeecCCC--CeeccccchhhhHHHHH
Confidence 344445555544332234566889999999999999999999999996 899999999877 4999
Q ss_pred ---ccccccccCCceEEEEecCCccHHHHHhhcCCCch--------hhH------HHHHHhhhee-------eeeeeccc
Q psy307 687 ---EKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNA--------SLE------EKTAAEFYCI-------CIVLLNKT 742 (1019)
Q Consensus 687 ---~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i--------~lw------~~~~~e~~~~-------~i~~~~~~ 742 (1019)
++++..+++|.|++ .+|...+..|+.++.+++. +|. .+|++|||.. .+++ ..
T Consensus 97 ~~~e~~~~~~kn~~iLr--tsps~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~--~~ 172 (339)
T 3dad_A 97 GFYEEISKGRKPTLILR--TQLSVRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGA--AA 172 (339)
T ss_dssp CGGGTGGGTCCCEEEEE--ECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHT--TS
T ss_pred HHHHhccccccCceEEe--cCcHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHH--hc
Confidence 88999999999988 9999999999999997764 222 1899999992 2332 22
Q ss_pred hhhhhh-chh-------------------hhH-HHHHHHHhhhhhhhhcC--chhhHHHHhcc--------cccc-----
Q psy307 743 WKEMRA-TTE-------------------DFV-KVFSVVREQITRALSSQ--PASLDKFRANI--------SRLT----- 786 (1019)
Q Consensus 743 ~~~~~a-~l~-------------------~fv-kv~s~v~~~~~~~~~~~--~~~L~~~~~~~--------~~~~----- 786 (1019)
.+++++ +|+ .|| +++++|+. ..+++++ ...|..||..+ ++++
T Consensus 173 ~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s--~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~ 250 (339)
T 3dad_A 173 DHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCAS--LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVAST 250 (339)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGC--SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcC--ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhc
Confidence 556555 554 688 88888885 3455555 23444777776 3445
Q ss_pred -----HHHHHHHhhccccchhhhhcccccHHHHHhhc--------hHHHHHHHHHHhhcceec
Q psy307 787 -----YSEITNLWQQERTSREEWESHAKPIVELKELI--------TPEIVDLIQQQRLGYLVE 836 (1019)
Q Consensus 787 -----~~~l~~~l~~~~~~~~~~~~~~~~~~lln~l~--------~~ei~~~i~~~~l~~li~ 836 (1019)
++.|+.+|+..-.++.++|.| +|+|||+++ +.+|.+.+.+++++..|.
T Consensus 251 ~~~~p~~~Lv~~L~~~~~~D~elq~~--amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~ 311 (339)
T 3dad_A 251 TGAPPWANLVSILEEKNGADPELLVY--TVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQ 311 (339)
T ss_dssp HCCCTTHHHHHHHTTTTSCCHHHHHH--HHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHH
T ss_pred cCCCcHHHHHHHHhccCCCCHHHHHH--HHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHH
Confidence 999999999333389999999 999999999 347888899999887654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.38 E-value=8.2e-11 Score=126.78 Aligned_cols=235 Identities=7% Similarity=-0.023 Sum_probs=158.2
Q ss_pred CeEEEEEcCCCCcEEE-EeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 337 GISAIRWFPKSAHLLL-SCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLa-Sgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
...+++++++ +.+++ +.+.++.|.+|+.... ........+...+.+++++++| .++++.. ++
T Consensus 25 ~p~~i~~~~~-g~l~v~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~~~~g--------------~l~v~~~-~~ 87 (270)
T 1rwi_B 25 SPSGVAVDSA-GNVYVTSEGMYGRVVKLATGST-GTTVLPFNGLYQPQGLAVDGAG--------------TVYVTDF-NN 87 (270)
T ss_dssp CEEEEEECTT-CCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTC--------------CEEEEET-TT
T ss_pred CccceEECCC-CCEEEEccCCCCcEEEecCCCc-ccceEeeCCcCCcceeEECCCC--------------CEEEEcC-CC
Confidence 6788999996 66776 5578899999987332 2211112333457778888777 4555555 88
Q ss_pred cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeec
Q psy307 416 RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLD 495 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~ 495 (1019)
.|.+||... .............+.+++++++|+.+++...++.|.+||..+......
T Consensus 88 ~i~~~d~~~-~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~---------------------- 144 (270)
T 1rwi_B 88 RVVTLAAGS-NNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL---------------------- 144 (270)
T ss_dssp EEEEECTTC-SCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC----------------------
T ss_pred EEEEEeCCC-ceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee----------------------
Confidence 999999743 222222223336789999999998777777788999997654432110
Q ss_pred cCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC
Q psy307 496 IPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA 575 (1019)
Q Consensus 496 ~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~ 575 (1019)
.......+..++++++|+++++...++.|.+||....... .....+. ..+.+++++++|.++++...
T Consensus 145 --------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~---~~~~~~~--~~p~~i~~d~~g~l~v~~~~ 211 (270)
T 1rwi_B 145 --------PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV---VLPFTDI--TAPWGIAVDEAGTVYVTEHN 211 (270)
T ss_dssp --------CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEE---ECCCSSC--CSEEEEEECTTCCEEEEETT
T ss_pred --------ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceE---eecccCC--CCceEEEECCCCCEEEEECC
Confidence 0011234567889999997777777899999998764321 1111111 45789999999988887777
Q ss_pred CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 576 DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 576 DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
++.|.+||..+.........+-..+.++++++++ .++++...+++|.++
T Consensus 212 ~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~v~~~ 260 (270)
T 1rwi_B 212 TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVVKL 260 (270)
T ss_dssp TSCEEEECTTCSCCEECCCCSCSCEEEEEECTTC-CEEEEEGGGTEEEEE
T ss_pred CCcEEEEcCCCCcceeeccCCCCCceeEEECCCC-CEEEEECCCCEEEEE
Confidence 8899999987654433222333568999999998 588888889998765
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.35 E-value=5.5e-10 Score=123.00 Aligned_cols=243 Identities=12% Similarity=0.074 Sum_probs=158.1
Q ss_pred ccCCCCeEEEEEcCCCCcEEEE-------eeCCCeEEEEecCCCcEEEEEec----ccCccEeEEEEcCC-CCceeEEEe
Q psy307 332 EGHTKGISAIRWFPKSAHLLLS-------CSMDCRVKLWEVYKERRCVRTYY----GHRQAVRDICFNNT-GTNFISAIR 399 (1019)
Q Consensus 332 ~gH~~~V~~i~fspd~g~lLaS-------gs~Dg~I~IWdl~~~~~~~~~~~----gh~~~V~~i~fspd-g~~~vs~i~ 399 (1019)
.+.-....+++|+++ +.++++ ++.++.|.+||.... +...... ++...+.+++++++ |
T Consensus 14 ~~~~~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~i~~~~~~g-------- 83 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDLKTG-KKTVICKPEVNGYGGIPAGCQCDRDAN-------- 83 (314)
T ss_dssp ECCCTTCEEEEECTT-SCEEEEETTCEETTEECCEEEEECTTTC-CEEEEECCEETTEECCEEEEEECSSSS--------
T ss_pred hccCCCccCceECCC-CCEEEEEeccccCCCCCCEEEEEeCCCC-cEEEEEecccCCCCCCCceEEEecCCC--------
Confidence 334456789999985 677777 678899999997443 3222111 24466788888887 5
Q ss_pred ecCCCCcEEEEEeCCCcEEEEEccCCCeEEEE-Ecc----ccccEeEEEEecCCCEEEEEEcC---------------Ce
Q psy307 400 WFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRT-YYG----HRQAVRDICFNNTGTNFISAGYD---------------RY 459 (1019)
Q Consensus 400 ~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~-l~~----H~~~V~sl~fspdg~~l~S~s~D---------------g~ 459 (1019)
.++ .++..+.|.+||.. ++.... ... +...+.+++++++|+.+++...+ +.
T Consensus 84 ------~l~-v~~~~~~l~~~d~~--g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 154 (314)
T 1pjx_A 84 ------QLF-VADMRLGLLVVQTD--GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGS 154 (314)
T ss_dssp ------EEE-EEETTTEEEEEETT--SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred ------cEE-EEECCCCEEEEeCC--CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCe
Confidence 344 44445578899985 443332 211 12458899999999887776655 46
Q ss_pred EEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEc----CCCCEEEEE-ecCCeEEE
Q psy307 460 LKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSS----PNNKWLACQ-SMDNKILI 534 (1019)
Q Consensus 460 I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~s----pdg~~Lasg-s~Dg~I~i 534 (1019)
|..||.. ++........ .....++++ |+++.++++ +.++.|.+
T Consensus 155 l~~~~~~-g~~~~~~~~~-------------------------------~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~ 202 (314)
T 1pjx_A 155 IYCFTTD-GQMIQVDTAF-------------------------------QFPNGIAVRHMNDGRPYQLIVAETPTKKLWS 202 (314)
T ss_dssp EEEECTT-SCEEEEEEEE-------------------------------SSEEEEEEEECTTSCEEEEEEEETTTTEEEE
T ss_pred EEEECCC-CCEEEeccCC-------------------------------CCcceEEEecccCCCCCEEEEEECCCCeEEE
Confidence 7777655 4432221110 123456777 888665544 56789999
Q ss_pred EEccCcccccceeEEeccc-cc-cceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcE
Q psy307 535 FSALNRFKLNRKKTFEGHM-VA-GYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSK 612 (1019)
Q Consensus 535 wd~~~~~~~~~~~~l~gh~-~~-~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~ 612 (1019)
|+............+.... .. ..+..++++++|+++++...++.|.+||..+++.+..+..+...+.+++++|++..+
T Consensus 203 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l 282 (314)
T 1pjx_A 203 YDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTI 282 (314)
T ss_dssp EEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEE
T ss_pred EECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEE
Confidence 9976211111111111111 11 346789999999988888788999999998888888787777789999999998435
Q ss_pred EEEEeCCCcEEEE
Q psy307 613 VVTAGWDAATAKV 625 (1019)
Q Consensus 613 l~s~s~Dg~I~iw 625 (1019)
+++...++.|.++
T Consensus 283 ~v~~~~~~~l~~~ 295 (314)
T 1pjx_A 283 FVTEHENNAVWKF 295 (314)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEeCCCCeEEEE
Confidence 6666667777665
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.7e-10 Score=125.56 Aligned_cols=235 Identities=9% Similarity=0.025 Sum_probs=160.1
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
.....+++. ++.+.++...++.|.+||. .+.+.+.++. .......+++++++ .+.++...++
T Consensus 44 ~~~~~i~~~--~~~lyv~~~~~~~v~viD~-~t~~~~~~i~-~~~~p~~i~~~~~g--------------~lyv~~~~~~ 105 (328)
T 3dsm_A 44 DVAQSMVIR--DGIGWIVVNNSHVIFAIDI-NTFKEVGRIT-GFTSPRYIHFLSDE--------------KAYVTQIWDY 105 (328)
T ss_dssp SCEEEEEEE--TTEEEEEEGGGTEEEEEET-TTCCEEEEEE-CCSSEEEEEEEETT--------------EEEEEEBSCS
T ss_pred ccceEEEEE--CCEEEEEEcCCCEEEEEEC-cccEEEEEcC-CCCCCcEEEEeCCC--------------eEEEEECCCC
Confidence 346777774 3667777777899999999 4456666664 34567788887776 4455555899
Q ss_pred cEEEEEccCCCeEEEEEcccc-----ccEeEEEEecCCCEEEEEE--cCCeEEEEECCCCceEEEEecCCceEEEEEecC
Q psy307 416 RVKLWEVYKEHRCVRTYYGHR-----QAVRDICFNNTGTNFISAG--YDRYLKLWDTESGECISRFTSRKVAYCVKFHPD 488 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~H~-----~~V~sl~fspdg~~l~S~s--~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~ 488 (1019)
.|.+||+ .+.+....+.... .....+++ ++..++.+. .+++|.+||+.+++.+..+.....
T Consensus 106 ~v~~iD~-~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~--------- 173 (328)
T 3dsm_A 106 RIFIINP-KTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQ--------- 173 (328)
T ss_dssp EEEEEET-TTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSC---------
T ss_pred eEEEEEC-CCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCC---------
Confidence 9999999 4555555554322 14556777 345555555 489999999999988776654322
Q ss_pred CCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC----------CeEEEEEccCcccccceeEEeccccccce
Q psy307 489 EDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD----------NKILIFSALNRFKLNRKKTFEGHMVAGYA 558 (1019)
Q Consensus 489 ~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D----------g~I~iwd~~~~~~~~~~~~l~gh~~~~~V 558 (1019)
...++++|+|++++++..+ +.|.+||..+... ...+.-.. ...+
T Consensus 174 ----------------------p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v---~~~~~~~~-g~~p 227 (328)
T 3dsm_A 174 ----------------------PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV---EKQFKFKL-GDWP 227 (328)
T ss_dssp ----------------------BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE---EEEEECCT-TCCC
T ss_pred ----------------------ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE---EEEEecCC-CCCc
Confidence 2346677888876666554 7999999887632 23332211 1347
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee--eeccCCCEEEEEEcCCCCcEEEEE----eCCCcEEEEeccc
Q psy307 559 CSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKK--WKAHDGVCISTLWHPHEPSKVVTA----GWDAATAKVQDAN 629 (1019)
Q Consensus 559 ~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~--l~~h~~~V~sl~~sp~~~~~l~s~----s~Dg~I~iwwd~~ 629 (1019)
..++|+|++++|+++.. .|.+||..+++.... +..+.....+++++|+++.++++. ..+++|.+| +.+
T Consensus 228 ~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~-d~~ 301 (328)
T 3dsm_A 228 SEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRY-SPQ 301 (328)
T ss_dssp EEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEE-CTT
T ss_pred eeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEE-CCC
Confidence 88999999999888765 899999998876432 222245689999999766677776 667787554 544
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.2e-10 Score=122.08 Aligned_cols=217 Identities=10% Similarity=0.077 Sum_probs=163.1
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEecccC-ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYGHR-QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH 426 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~-~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~ 426 (1019)
+++|++++.|+.|.+||. .+++.+..+..+. ..+.++.++|+| ++++ +.++.|..||. .+
T Consensus 5 ~~~lv~~~~~~~v~~~d~-~tG~~~w~~~~~~~~~~~~~~~~pdG--------------~ilv--s~~~~V~~~d~--~G 65 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINK-DTKEIVWEYPLEKGWECNSVAATKAG--------------EILF--SYSKGAKMITR--DG 65 (276)
T ss_dssp CEEEEECTTCSEEEEEET-TTTEEEEEEECCTTCCCCEEEECTTS--------------CEEE--ECBSEEEEECT--TS
T ss_pred CcEEEeeCCCCEEEEEEC-CCCeEEEEeCCCccCCCcCeEECCCC--------------CEEE--eCCCCEEEECC--CC
Confidence 589999999999999997 5667788887766 478899999998 5666 45778999997 46
Q ss_pred eEEEEEccc-cccEeEEEEecCCCEEEEEEc-CCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeee
Q psy307 427 RCVRTYYGH-RQAVRDICFNNTGTNFISAGY-DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIA 504 (1019)
Q Consensus 427 ~~~~~l~~H-~~~V~sl~fspdg~~l~S~s~-Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~ 504 (1019)
+.+..+..+ ...+.++.+.++|+.+++.+. ++.|..+|. +|+.+..+......
T Consensus 66 ~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~------------------------ 120 (276)
T 3no2_A 66 RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGI------------------------ 120 (276)
T ss_dssp CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSC------------------------
T ss_pred CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC------------------------
Confidence 667777664 357889999999999999887 788888885 67776666432100
Q ss_pred CCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy307 505 DPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDW 584 (1019)
Q Consensus 505 ~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl 584 (1019)
.........+++.++|+++++.+.++.|..||.. +. .+..+... ..+.++.+.++|.++++++.+++|..+|.
T Consensus 121 ~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~---~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~ 193 (276)
T 3no2_A 121 ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ---LLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNL 193 (276)
T ss_dssp SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC---EEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECT
T ss_pred CcccccccCceECCCCCEEEEecCCCEEEEECCC-CC---EEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeC
Confidence 0001123456778999999999999999999987 53 33444433 23456788899999999998999999999
Q ss_pred CCCceeeeeeccC------CCEEEEEEcCCCCcEEEEE
Q psy307 585 KTTKLFKKWKAHD------GVCISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 585 ~t~~~l~~l~~h~------~~V~sl~~sp~~~~~l~s~ 616 (1019)
.+|+.+.++..+. ..+.+++..++| .++++.
T Consensus 194 ~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G-~i~v~~ 230 (276)
T 3no2_A 194 ESNRIVRRVNANDIEGVQLFFVAQLFPLQNG-GLYICN 230 (276)
T ss_dssp TTCCEEEEEEGGGSBSCCCSEEEEEEECTTS-CEEEEE
T ss_pred cCCcEEEEecCCCCCCccccccccceEcCCC-CEEEEe
Confidence 9999998886543 127788888887 455554
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-10 Score=130.23 Aligned_cols=234 Identities=9% Similarity=0.024 Sum_probs=160.3
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
..|.+++|+++ +..+++.+.++.++.|. ......+.++...+.+++|+++| .+++++..++
T Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g--------------~l~~~~~~~~ 66 (333)
T 2dg1_A 6 QDLPTLFYSGK-SNSAVPIISESELQTIT----AEPWLEISKKGLQLEGLNFDRQG--------------QLFLLDVFEG 66 (333)
T ss_dssp CCCCBCCSCGG-GGCSSCCCCGGGSCEEE----CEEEEEEESSCCCEEEEEECTTS--------------CEEEEETTTC
T ss_pred cccceeeecCC-ccceeEEeecccCcccc----cceeEEEeccCccccCcEECCCC--------------CEEEEECCCC
Confidence 35777888885 55666668889999993 24566677777778899998888 5777888899
Q ss_pred cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcC----CeEEEEECCCCceEEEEecCCceEEEEEecCCCe
Q psy307 416 RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD----RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDK 491 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~D----g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~ 491 (1019)
.|.+||.. ++........+...+.+++++++|+.++++..+ +.|.+||..++.....+...
T Consensus 67 ~i~~~d~~-~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-------------- 131 (333)
T 2dg1_A 67 NIFKINPE-TKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL-------------- 131 (333)
T ss_dssp EEEEECTT-TCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS--------------
T ss_pred EEEEEeCC-CCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC--------------
Confidence 99999984 444444444567789999999999877777666 68999998877654222110
Q ss_pred eeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec------CCeEEEEEccCcccccceeEEeccccccceEEEEEcC
Q psy307 492 QHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM------DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP 565 (1019)
Q Consensus 492 ~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~------Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp 565 (1019)
.....+..++++|+|+++++... .+.|..|+..++.. ..+.... ..+..++|+|
T Consensus 132 --------------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~--~~~~~i~~~~ 191 (333)
T 2dg1_A 132 --------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV----TPIIQNI--SVANGIALST 191 (333)
T ss_dssp --------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE----EEEEEEE--SSEEEEEECT
T ss_pred --------------ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE----EEeecCC--CcccceEECC
Confidence 01234567888888887776653 35666666554321 1222221 3477899999
Q ss_pred CCCEEE-EEeCCCeEEEEeCCC-Cceeee--------eeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 566 DMSYLI-SGDADGKCYIWDWKT-TKLFKK--------WKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 566 dg~~La-sgs~DG~I~IWDl~t-~~~l~~--------l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+|++|+ +.+.++.|++||+.+ +..+.. +.++ ..+.++++++++ .++++...++.|.+|
T Consensus 192 dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G-~l~v~~~~~~~v~~~ 259 (333)
T 2dg1_A 192 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDD-NLYVAMYGQGRVLVF 259 (333)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTC-CEEEEEETTTEEEEE
T ss_pred CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCC-CEEEEEcCCCEEEEE
Confidence 998664 445678999999964 333321 1222 367889999998 566776677888765
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.6e-09 Score=113.65 Aligned_cols=266 Identities=7% Similarity=-0.019 Sum_probs=175.2
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEE
Q psy307 332 EGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSC 411 (1019)
Q Consensus 332 ~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sg 411 (1019)
..+...+.++++.++ +.++++...++.|.+||.. ..........+...+.++++.++| .++++.
T Consensus 11 ~~~~~~~~~i~~d~~-g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g--------------~l~v~~ 74 (299)
T 2z2n_A 11 TNQDTGPYGITVSDK-GKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDG--------------EVWFTE 74 (299)
T ss_dssp CSSSCCEEEEEECTT-SCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTS--------------CEEEEE
T ss_pred CCcCCCccceEECCC-CCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCC--------------CEEEeC
Confidence 345568999999996 6777766668999999985 322222223345678888888887 566666
Q ss_pred eCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEe--cCCceEEEEEecCC
Q psy307 412 SMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFT--SRKVAYCVKFHPDE 489 (1019)
Q Consensus 412 s~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~--~~~~v~~v~~~p~~ 489 (1019)
..++.|..||.. .......+......+.+++++++|+.+++...++.|.+||. +++...... ....+..+++.+++
T Consensus 75 ~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g 152 (299)
T 2z2n_A 75 NAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN 152 (299)
T ss_dssp TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS
T ss_pred CCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC
Confidence 668889999974 22222222334567899999999988877777889999998 555443221 23567888898887
Q ss_pred CeeeeccCCC----------ceee-eCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccce
Q psy307 490 DKQHLDIPVD----------MKYI-ADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYA 558 (1019)
Q Consensus 490 ~~~~~~~~~~----------~~~i-~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V 558 (1019)
...+...... .... .......+..++++++|.++++...++.|.+||. ++.. ..+........+
T Consensus 153 ~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~----~~~~~~~~~~~~ 227 (299)
T 2z2n_A 153 ALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI----TEFKIPTPNARP 227 (299)
T ss_dssp CEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE----EEEECSSTTCCE
T ss_pred CEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE----EEEECCCCCCCc
Confidence 5444322111 1111 1112344668999999998777777899999998 4421 122211122568
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee--eccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 559 CSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKW--KAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 559 ~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l--~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.+++++++|+++++...++.|.+||. +++. ..+ ..+...+.++++ +++ .++++.+ .+.+.++
T Consensus 228 ~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g-~l~v~~~-~~~l~~~ 291 (299)
T 2z2n_A 228 HAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGE-TIWFAME-CDKIGKL 291 (299)
T ss_dssp EEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSS-CEEEEET-TTEEEEE
T ss_pred eeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCC-CEEEEec-CCcEEEE
Confidence 89999999997777667889999998 4543 333 344567899999 776 4555554 4555454
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-09 Score=127.86 Aligned_cols=300 Identities=13% Similarity=0.105 Sum_probs=184.7
Q ss_pred CCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecC-CCcEEEE
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVY-KERRCVR 373 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~-~~~~~~~ 373 (1019)
|..+..+++...++.|.+++... .+.+.++.... .+..+.|+|+ ++++++++.|+.|.+||+. ...+.+.
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t-------~~v~~~i~~g~-~p~~v~~SpD-Gr~lyv~~~dg~V~viD~~~~t~~~v~ 234 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGST-------YEIKTVLDTGY-AVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVA 234 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTT-------CCEEEEEECSS-CEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEE
T ss_pred CCCceEEEEeCCCCeEEEEECCC-------CeEEEEEeCCC-CccceEECCC-CCEEEEEcCCCeEEEEECCCCCCcEeE
Confidence 44556777788889999998753 24455665433 5779999996 7888889999999999994 3455666
Q ss_pred EecccCccEeEEEEc----CCCCceeEEEee-----------------------------------------cCCCCcEE
Q psy307 374 TYYGHRQAVRDICFN----NTGTNFISAIRW-----------------------------------------FPKSAHLL 408 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fs----pdg~~~vs~i~~-----------------------------------------~p~~~~~L 408 (1019)
.+.... ....++|+ |||++++.+..+ ++..+.++
T Consensus 235 ~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v 313 (567)
T 1qks_A 235 EIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 313 (567)
T ss_dssp EEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred EEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE
Confidence 665433 35789999 688654332111 01112223
Q ss_pred EEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEE-cCCeEEEEECCCCceEEEEec-CCceEEEEEe
Q psy307 409 LSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG-YDRYLKLWDTESGECISRFTS-RKVAYCVKFH 486 (1019)
Q Consensus 409 ~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s-~Dg~I~lWDl~t~~~i~~~~~-~~~v~~v~~~ 486 (1019)
++...+|.|.++|...................++.|+|+|++|++++ .+++|.++|+.+++.+..+.. ...+
T Consensus 314 v~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~P------ 387 (567)
T 1qks_A 314 VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP------ 387 (567)
T ss_dssp EEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB------
T ss_pred EEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCC------
Confidence 33333455555554322222111112233455778999999987766 578999999999987776654 2211
Q ss_pred cCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEE-EEEe-cCCeEEEEEccCccc----ccceeEEeccccccceEE
Q psy307 487 PDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWL-ACQS-MDNKILIFSALNRFK----LNRKKTFEGHMVAGYACS 560 (1019)
Q Consensus 487 p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~L-asgs-~Dg~I~iwd~~~~~~----~~~~~~l~gh~~~~~V~~ 560 (1019)
|...... .++|++..+ +++. .++.|.++|...... ...++++.... ..-..
T Consensus 388 --------------------hpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g--~g~~~ 444 (567)
T 1qks_A 388 --------------------HPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG--GGSLF 444 (567)
T ss_dssp --------------------CCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC--SCCCC
T ss_pred --------------------CCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC--CCCEE
Confidence 1111111 247774444 4443 468999999876321 34455655442 22234
Q ss_pred EEEcCCCCEEEEEeC-------CCeEEEEeCCCC-----c-eeeeeec--------cCCCEEEEEEcCCCCcEEEEEe--
Q psy307 561 LDFSPDMSYLISGDA-------DGKCYIWDWKTT-----K-LFKKWKA--------HDGVCISTLWHPHEPSKVVTAG-- 617 (1019)
Q Consensus 561 v~fspdg~~Lasgs~-------DG~I~IWDl~t~-----~-~l~~l~~--------h~~~V~sl~~sp~~~~~l~s~s-- 617 (1019)
+..+|++++|.+... .+.|.|+|+.+. . .+..+.. ....+..+.|+|+|...++|..
T Consensus 445 i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~ 524 (567)
T 1qks_A 445 IKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNG 524 (567)
T ss_dssp EECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECC
T ss_pred EEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecC
Confidence 778999999988663 358999999876 2 1233321 1346899999999965555533
Q ss_pred --CCCcEEEEeccceeeee
Q psy307 618 --WDAATAKVQDANIVKIA 634 (1019)
Q Consensus 618 --~Dg~I~iwwd~~i~ki~ 634 (1019)
.++.|.+ .|....++.
T Consensus 525 ~~~~~~i~v-~D~~t~~~~ 542 (567)
T 1qks_A 525 KDQESALVV-VDDKTLELK 542 (567)
T ss_dssp TTSCCEEEE-EETTTTEEE
T ss_pred CCCCCcEEE-EECCCceEE
Confidence 2678866 455555544
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.1e-11 Score=145.83 Aligned_cols=240 Identities=5% Similarity=-0.079 Sum_probs=154.6
Q ss_pred cCCCCeEEEEEcCCCCcEEE-----EeeCCCeEEEEecCCCcEEEEEecccCccE--eEEEEcCCCCceeEEEeecCCCC
Q psy307 333 GHTKGISAIRWFPKSAHLLL-----SCSMDCRVKLWEVYKERRCVRTYYGHRQAV--RDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLa-----Sgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V--~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
+|...+.+++|||| |++|+ +|+.+..|++||+.++. .+. ..+...+ ..++|+|||
T Consensus 118 ~~~~~~~~~~~SPD-G~~la~~~~~~G~~~~~i~v~dl~tg~-~~~--~~~~~~~~~~~~~wspDg-------------- 179 (695)
T 2bkl_A 118 DGTVSLGTWAVSWD-GKKVAFAQKPNAADEAVLHVIDVDSGE-WSK--VDVIEGGKYATPKWTPDS-------------- 179 (695)
T ss_dssp SSCEEEEEEEECTT-SSEEEEEEEETTCSCCEEEEEETTTCC-BCS--SCCBSCCTTCCCEECTTS--------------
T ss_pred CCCEEEEEEEECCC-CCEEEEEECCCCCceEEEEEEECCCCC-CcC--CcccCcccccceEEecCC--------------
Confidence 57678999999997 56665 34445789999995443 220 1122223 678888888
Q ss_pred cEEEEEeCCCc-------------EEEEEccCCC---eEEEEEccccccEeEEEEecCCCEEEEEEcCC----eEEEEEC
Q psy307 406 HLLLSCSMDCR-------------VKLWEVYKEH---RCVRTYYGHRQAVRDICFNNTGTNFISAGYDR----YLKLWDT 465 (1019)
Q Consensus 406 ~~L~sgs~Dg~-------------I~IWDl~~~~---~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg----~I~lWDl 465 (1019)
+.|+.++.|.. |++|++.+.. .++.....|...+.++.|+|||++|+.++.++ .|.+||.
T Consensus 180 ~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~ 259 (695)
T 2bkl_A 180 KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRP 259 (695)
T ss_dssp SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECT
T ss_pred CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcC
Confidence 56777777665 9999995543 24444455667889999999999988887766 6777766
Q ss_pred CCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec----CCeEEEEEccCcc
Q psy307 466 ESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM----DNKILIFSALNRF 541 (1019)
Q Consensus 466 ~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~----Dg~I~iwd~~~~~ 541 (1019)
.++.......... .+....+ ++|. ++..+. ++.|.+||+.++.
T Consensus 260 ~~~~~~~l~~~~~-------------------------------~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 260 GEKDFRLLVKGVG-------------------------------AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp TCSSCEEEEECSS-------------------------------CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred CCCceEEeecCCC-------------------------------ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence 5554322221111 1122233 4566 444443 5799999987653
Q ss_pred cccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeeeeecc-CCCEEEEEEcCCCCcEEEEEeC-
Q psy307 542 KLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWK-TTKLFKKWKAH-DGVCISTLWHPHEPSKVVTAGW- 618 (1019)
Q Consensus 542 ~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~-t~~~l~~l~~h-~~~V~sl~~sp~~~~~l~s~s~- 618 (1019)
.. ....+..+.....+..++|+ ++.+++++..||..+||.+. +++....+..+ .+.+.++.++|++..++++.+.
T Consensus 307 ~~-~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~ 384 (695)
T 2bkl_A 307 RA-SWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSF 384 (695)
T ss_dssp GG-GCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEET
T ss_pred cc-CCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCC
Confidence 21 12333333223457788888 77888999999988887654 46666667655 5678888999988655555544
Q ss_pred --CCcEEEE
Q psy307 619 --DAATAKV 625 (1019)
Q Consensus 619 --Dg~I~iw 625 (1019)
.++|+.|
T Consensus 385 ~~P~~v~~~ 393 (695)
T 2bkl_A 385 TTPRQIYKT 393 (695)
T ss_dssp TEEEEEEEE
T ss_pred CCCCEEEEE
Confidence 3456544
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.3e-10 Score=124.05 Aligned_cols=239 Identities=7% Similarity=0.099 Sum_probs=136.8
Q ss_pred CCeEEEEEcCCCCcEEEEeeCC---C--eEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEE--
Q psy307 336 KGISAIRWFPKSAHLLLSCSMD---C--RVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLL-- 408 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~D---g--~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L-- 408 (1019)
..+.+++|+|+ |..|+.++.+ + .|.+|++. +++....... .. +..++|+|+|..++....-.+......
T Consensus 59 ~~~~~~~~SpD-g~~la~~~~~~~~~~~~l~~~~~~-~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~ 134 (347)
T 2gop_A 59 ENATMPRISPD-GKKIAFMRANEEKKVSEIWVADLE-TLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFE 134 (347)
T ss_dssp ESCEEEEECTT-SSEEEEEEEETTTTEEEEEEEETT-TTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC-------
T ss_pred ccCCCeEECCC-CCEEEEEEeccCCCcceEEEEECC-CCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEE
Confidence 46889999997 5666655543 3 47777874 3444443333 33 889999999853322211000000000
Q ss_pred -----------EEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCC-------eEEEEECCCCce
Q psy307 409 -----------LSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDR-------YLKLWDTESGEC 470 (1019)
Q Consensus 409 -----------~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg-------~I~lWDl~t~~~ 470 (1019)
+.......|.+||+ .++..+..+.. . .+..++|+|+| .+++++.++ ...||.+.+++.
T Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~d~-~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 210 (347)
T 2gop_A 135 DDVPAWFDDLGFFDGEKTTFWIFDT-ESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE 210 (347)
T ss_dssp --CCCC---------CEEEEEEEET-TTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred cccceeecCcccccCccceEEEEEC-CCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce
Confidence 00011357889998 44554344444 3 78899999999 777776542 334444435554
Q ss_pred EEEEecCCceEEEEEecCCCeeeeccCC--------Ccee---------eeCCCCCcccE-EEEcCCCCEEEEEecCCeE
Q psy307 471 ISRFTSRKVAYCVKFHPDEDKQHLDIPV--------DMKY---------IADPTMHSMPA-VTSSPNNKWLACQSMDNKI 532 (1019)
Q Consensus 471 i~~~~~~~~v~~v~~~p~~~~~~~~~~~--------~~~~---------i~~~~~~~i~~-v~~spdg~~Lasgs~Dg~I 532 (1019)
...... ..+.. ++|++..+++.... ...+ +...+...+.. +.|+ ++ ++++++.++.+
T Consensus 211 ~~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~ 285 (347)
T 2gop_A 211 EKMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYDGKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSV 285 (347)
T ss_dssp EEEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEECSSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEE
T ss_pred EEeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEECCCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcE
Confidence 333332 33333 38888766542211 1111 11222345565 8899 88 88999999999
Q ss_pred EEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeE-EEEeCCCCceeeeeeccCC
Q psy307 533 LIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKC-YIWDWKTTKLFKKWKAHDG 598 (1019)
Q Consensus 533 ~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I-~IWDl~t~~~l~~l~~h~~ 598 (1019)
++| +.++ . . ..+..+. +.|.+++|+| .++++++.++.. .||.+. ++ ...+..|..
T Consensus 286 ~l~-~~~g-~--~-~~~~~~~--~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~ 341 (347)
T 2gop_A 286 NLY-IWDG-E--I-KPIAKGR--HWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYND 341 (347)
T ss_dssp EEE-EESS-S--E-EEEECSS--SEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTS
T ss_pred EEE-EcCC-c--e-EEEecCC--CeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccH
Confidence 999 8743 1 2 2333333 6688999999 677777777654 677665 54 444555543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.27 E-value=5.4e-09 Score=114.99 Aligned_cols=235 Identities=12% Similarity=0.077 Sum_probs=153.5
Q ss_pred cCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe
Q psy307 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS 412 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs 412 (1019)
.+..-.-+..|+|+++.++++...++.|..||...... ..+ .....+.+++++++| +++++ .
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~-~~~~~~~~i~~~~dG--------------~l~v~-~ 71 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--QRV-TMDAPVSSVALRQSG--------------GYVAT-I 71 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEE-ECSSCEEEEEEBTTS--------------SEEEE-E
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--EEE-eCCCceEEEEECCCC--------------CEEEE-E
Confidence 33345668899998788899988999999999854332 222 234678888888888 44443 3
Q ss_pred CCCcEEEEEccCCCeEEEEEcc----ccccEeEEEEecCCCEEEEEEcC---------CeEEEEECCC-CceEEEEecCC
Q psy307 413 MDCRVKLWEVYKEHRCVRTYYG----HRQAVRDICFNNTGTNFISAGYD---------RYLKLWDTES-GECISRFTSRK 478 (1019)
Q Consensus 413 ~Dg~I~IWDl~~~~~~~~~l~~----H~~~V~sl~fspdg~~l~S~s~D---------g~I~lWDl~t-~~~i~~~~~~~ 478 (1019)
++.|.+||.. ++........ ....+++++++|+|+.+++...+ ....||.+.. ++.......
T Consensus 72 -~~~l~~~d~~-~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~-- 147 (297)
T 3g4e_A 72 -GTKFCALNWK-EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ-- 147 (297)
T ss_dssp -TTEEEEEETT-TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE--
T ss_pred -CCeEEEEECC-CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec--
Confidence 5689999984 3333222221 12458899999999976654332 2234444332 222111110
Q ss_pred ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEE-EEEecCCeEEEEEcc--CcccccceeEEec-ccc
Q psy307 479 VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWL-ACQSMDNKILIFSAL--NRFKLNRKKTFEG-HMV 554 (1019)
Q Consensus 479 ~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~L-asgs~Dg~I~iwd~~--~~~~~~~~~~l~g-h~~ 554 (1019)
......++|+|+++.| ++.+.++.|.+|++. ++. +.....+.. ...
T Consensus 148 -----------------------------~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~-~~~~~~~~~~~~~ 197 (297)
T 3g4e_A 148 -----------------------------VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQ-ISNRRSVYKLEKE 197 (297)
T ss_dssp -----------------------------ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCC-EEEEEEEEECCGG
T ss_pred -----------------------------cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCc-ccCcEEEEECCCC
Confidence 0123468889999866 455667899999874 332 111112211 111
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEc-CCCCcEEEEEeCC
Q psy307 555 AGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWH-PHEPSKVVTAGWD 619 (1019)
Q Consensus 555 ~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~s-p~~~~~l~s~s~D 619 (1019)
.+.+..++++++|++.++...++.|.+||..+++.+..+..+...+++++|. |++..+++|...+
T Consensus 198 ~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 198 EQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp GCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred CCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 2457889999999988888788899999999999999998887789999998 7876566666544
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.24 E-value=8e-10 Score=121.19 Aligned_cols=229 Identities=11% Similarity=0.019 Sum_probs=154.9
Q ss_pred CCCCCCC-eeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE
Q psy307 293 PTDYQGR-SFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC 371 (1019)
Q Consensus 293 ~~~~~gr-~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~ 371 (1019)
.++++|+ .++++..++.|..|+... . +..+..+...+.+++++|+ +.++++...++.|.+||..+. +.
T Consensus 34 ~~d~~g~~l~~~~~~~~~i~~~~~~~--------~-~~~~~~~~~~~~~l~~~~d-g~l~v~~~~~~~i~~~d~~~g-~~ 102 (296)
T 3e5z_A 34 VYVPARSAVIFSDVRQNRTWAWSDDG--------Q-LSPEMHPSHHQNGHCLNKQ-GHLIACSHGLRRLERQREPGG-EW 102 (296)
T ss_dssp EEEGGGTEEEEEEGGGTEEEEEETTS--------C-EEEEESSCSSEEEEEECTT-CCEEEEETTTTEEEEECSTTC-CE
T ss_pred eEeCCCCEEEEEeCCCCEEEEEECCC--------C-eEEEECCCCCcceeeECCC-CcEEEEecCCCeEEEEcCCCC-cE
Confidence 4677888 677777888899987653 1 4566678888999999996 677777777899999998433 33
Q ss_pred EEEeccc----CccEeEEEEcCCCCceeEEEeecCCCCcEEEEE----e-------------CCCcEEEEEccCCCeEEE
Q psy307 372 VRTYYGH----RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSC----S-------------MDCRVKLWEVYKEHRCVR 430 (1019)
Q Consensus 372 ~~~~~gh----~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sg----s-------------~Dg~I~IWDl~~~~~~~~ 430 (1019)
....... ...+.+++++|+| .++++. + ..+.|..++. .+. ..
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G--------------~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~--~g~-~~ 165 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDG--------------SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP--DGT-LS 165 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTS--------------CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT--TSC-EE
T ss_pred EEEeeccCCCCCCCCCCEEECCCC--------------CEEEECCccccccccccccccccCCCcEEEEECC--CCC-EE
Confidence 2222211 2346678888888 466652 2 1234444443 333 34
Q ss_pred EEccccccEeEEEEecCCCEEEEEEcCCeEEEEECC-CCce---EEEEecCCceEEEEEecCCCeeeeccCCCceeeeCC
Q psy307 431 TYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTE-SGEC---ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADP 506 (1019)
Q Consensus 431 ~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~-t~~~---i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~ 506 (1019)
.+..+......++|+|+++.+++.+.++.|.+||+. ++.. ...+ ..
T Consensus 166 ~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~------------------------------~~ 215 (296)
T 3e5z_A 166 APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF------------------------------TV 215 (296)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE------------------------------CC
T ss_pred EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe------------------------------eC
Confidence 445666778899999999988777778999999986 4443 1111 01
Q ss_pred CCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEE-cCCCCEEEEEeCCCeEEEEeCC
Q psy307 507 TMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDF-SPDMSYLISGDADGKCYIWDWK 585 (1019)
Q Consensus 507 ~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~f-spdg~~Lasgs~DG~I~IWDl~ 585 (1019)
....+..++++++|+++++. ++.|.+|+.... ....+..+. . +.+++| +|+++.|++++.+| +.-++.+
T Consensus 216 ~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~----~~~~~~~~~--~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~ 285 (296)
T 3e5z_A 216 EPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGD----ELGRVLTPQ--T-TSNLCFGGPEGRTLYMTVSTE-FWSIETN 285 (296)
T ss_dssp SSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSC----EEEEEECSS--C-CCEEEEESTTSCEEEEEETTE-EEEEECS
T ss_pred CCCCCCeEEECCCCCEEEEc--CCeEEEECCCCC----EEEEEECCC--C-ceeEEEECCCCCEEEEEcCCe-EEEEEcc
Confidence 12334578999999866665 899999998632 334555543 3 778899 68999998888764 5556666
Q ss_pred CCce
Q psy307 586 TTKL 589 (1019)
Q Consensus 586 t~~~ 589 (1019)
+.++
T Consensus 286 ~~~~ 289 (296)
T 3e5z_A 286 VRGL 289 (296)
T ss_dssp CCBC
T ss_pred cccc
Confidence 6554
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.24 E-value=6.9e-10 Score=119.44 Aligned_cols=235 Identities=6% Similarity=-0.031 Sum_probs=155.8
Q ss_pred CCCCCCeee-eCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 294 TDYQGRSFL-HPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 294 ~~~~gr~~~-~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.+.+|+.++ ....++.|..|+...... ......+...+.++++.++ +.++++.. ++.|.+||.... . .
T Consensus 31 ~~~~g~l~v~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~p~~i~~~~~-g~l~v~~~-~~~i~~~d~~~~-~-~ 99 (270)
T 1rwi_B 31 VDSAGNVYVTSEGMYGRVVKLATGSTGT-------TVLPFNGLYQPQGLAVDGA-GTVYVTDF-NNRVVTLAAGSN-N-Q 99 (270)
T ss_dssp ECTTCCEEEEECSSSCEEEEECC------------EECCCCSCCSCCCEEECTT-CCEEEEET-TTEEEEECTTCS-C-C
T ss_pred ECCCCCEEEEccCCCCcEEEecCCCccc-------ceEeeCCcCCcceeEECCC-CCEEEEcC-CCEEEEEeCCCc-e-E
Confidence 467888888 656778888886543211 1111234457889999996 66666555 899999998433 2 2
Q ss_pred EEec-ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEE
Q psy307 373 RTYY-GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNF 451 (1019)
Q Consensus 373 ~~~~-gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l 451 (1019)
..+. .....+.+++++++| .++++...++.|.+|+...... ..........+.+++++++|+.+
T Consensus 100 ~~~~~~~~~~p~~i~~~~~g--------------~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~ 164 (270)
T 1rwi_B 100 TVLPFDGLNYPEGLAVDTQG--------------AVYVADRGNNRVVKLAAGSKTQ-TVLPFTGLNDPDGVAVDNSGNVY 164 (270)
T ss_dssp EECCCCSCSSEEEEEECTTC--------------CEEEEEGGGTEEEEECTTCCSC-EECCCCSCCSCCCEEECTTCCEE
T ss_pred eeeecCCcCCCcceEECCCC--------------CEEEEECCCCEEEEEECCCcee-EeeccccCCCceeEEEeCCCCEE
Confidence 2222 233567888888877 5667777788999997633222 22222333467889999999877
Q ss_pred EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCe
Q psy307 452 ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNK 531 (1019)
Q Consensus 452 ~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~ 531 (1019)
++...++.|.+||..++....... .....+..++++++|.++++...++.
T Consensus 165 v~~~~~~~i~~~~~~~~~~~~~~~------------------------------~~~~~p~~i~~d~~g~l~v~~~~~~~ 214 (270)
T 1rwi_B 165 VTDTDNNRVVKLEAESNNQVVLPF------------------------------TDITAPWGIAVDEAGTVYVTEHNTNQ 214 (270)
T ss_dssp EEEGGGTEEEEECTTTCCEEECCC------------------------------SSCCSEEEEEECTTCCEEEEETTTSC
T ss_pred EEECCCCEEEEEecCCCceEeecc------------------------------cCCCCceEEEECCCCCEEEEECCCCc
Confidence 776678899999987654322100 01134557888999977777777899
Q ss_pred EEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q psy307 532 ILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKL 589 (1019)
Q Consensus 532 I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~ 589 (1019)
|.+|+..+.... .....+ ...+.+++++++|+++++...+++|+++++...+.
T Consensus 215 v~~~~~~~~~~~---~~~~~~--~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 215 VVKLLAGSTTST---VLPFTG--LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EEEECTTCSCCE---ECCCCS--CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred EEEEcCCCCcce---eeccCC--CCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 999998654221 111111 14578999999999888888999999999876654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.7e-10 Score=129.61 Aligned_cols=227 Identities=13% Similarity=0.066 Sum_probs=136.5
Q ss_pred CcEEEEEecccCcc-----EeEEEEcCCCCceeEEEeecCCCCcEEEEE-eCC--CcEEEEEccCCCeEEEEEccccccE
Q psy307 368 ERRCVRTYYGHRQA-----VRDICFNNTGTNFISAIRWFPKSAHLLLSC-SMD--CRVKLWEVYKEHRCVRTYYGHRQAV 439 (1019)
Q Consensus 368 ~~~~~~~~~gh~~~-----V~~i~fspdg~~~vs~i~~~p~~~~~L~sg-s~D--g~I~IWDl~~~~~~~~~l~~H~~~V 439 (1019)
.+..+..+..+... +.+++|+|+|. .|+.+ ..+ ..|.+||+ .++.......++....
T Consensus 19 ~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~--------------~l~~~~~~~g~~~l~~~d~-~~~~~~~l~~~~~~~~ 83 (396)
T 3c5m_A 19 TQVKVTRLTPTDIICHRNYFYQKCFTQDGK--------------KLLFAGDFDGNRNYYLLNL-ETQQAVQLTEGKGDNT 83 (396)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSC--------------EEEEEECTTSSCEEEEEET-TTTEEEECCCSSCBCT
T ss_pred CCcceEEEecCCCCccceeeecCcCCCCCC--------------EEEEEEecCCCceEEEEEC-CCCcEEEeecCCCCcc
Confidence 33444555544333 67778888883 44443 333 36788887 4444444333333333
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCc-eEE-------------------EEEecCCCeeee-----
Q psy307 440 RDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKV-AYC-------------------VKFHPDEDKQHL----- 494 (1019)
Q Consensus 440 ~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~-v~~-------------------v~~~p~~~~~~~----- 494 (1019)
..+.|+|+|++|+.++.++.|.+||+.+++.......+.. ... +.++|++....+
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH 163 (396)
T ss_dssp TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence 3478999999999999999999999999887665553322 111 234565543222
Q ss_pred ----------ccCCCceeeeCCCCCcccEEEEcC-CCCEEEEEecC------CeEEEEEccCcccccceeEEeccccccc
Q psy307 495 ----------DIPVDMKYIADPTMHSMPAVTSSP-NNKWLACQSMD------NKILIFSALNRFKLNRKKTFEGHMVAGY 557 (1019)
Q Consensus 495 ----------~~~~~~~~i~~~~~~~i~~v~~sp-dg~~Lasgs~D------g~I~iwd~~~~~~~~~~~~l~gh~~~~~ 557 (1019)
+...............+..+.|+| +++.|+..+.+ ..|.+||+.++.. ..+..+.....
T Consensus 164 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~----~~l~~~~~~~~ 239 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV----RKIKEHAEGES 239 (396)
T ss_dssp TCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC----EESSCCCTTEE
T ss_pred CCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce----eEeeccCCCcc
Confidence 111111111112334567889999 78877776643 3688888865421 22222211234
Q ss_pred eEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceeeeeeccCCCEEEEEEcC-CCCcEEEEEe
Q psy307 558 ACSLDFSPDMSYLISGDAD-----GKCYIWDWKTTKLFKKWKAHDGVCISTLWHP-HEPSKVVTAG 617 (1019)
Q Consensus 558 V~~v~fspdg~~Lasgs~D-----G~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp-~~~~~l~s~s 617 (1019)
+..++|+|||++|+.++.+ +.|++||+.+++...... ..+ .. +.|+| ++. ++++++
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~-~l~~~~ 301 (396)
T 3c5m_A 240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGS-LMVGDG 301 (396)
T ss_dssp EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSS-EEEEEE
T ss_pred ccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCc-eEEEec
Confidence 7789999999988776544 459999999887543322 222 33 88999 884 666654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.23 E-value=3e-09 Score=115.96 Aligned_cols=238 Identities=8% Similarity=-0.022 Sum_probs=169.5
Q ss_pred CCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCC-CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEE
Q psy307 296 YQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHT-KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRT 374 (1019)
Q Consensus 296 ~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~-~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~ 374 (1019)
..|+.++.++.|+.|.+|+.. .++.+.++..|. ..+.++.++|+ |++++ +.++.|..||. + ++.+..
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~-------tG~~~w~~~~~~~~~~~~~~~~pd-G~ilv--s~~~~V~~~d~-~-G~~~W~ 70 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKD-------TKEIVWEYPLEKGWECNSVAATKA-GEILF--SYSKGAKMITR-D-GRELWN 70 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETT-------TTEEEEEEECCTTCCCCEEEECTT-SCEEE--ECBSEEEEECT-T-SCEEEE
T ss_pred CCCcEEEeeCCCCEEEEEECC-------CCeEEEEeCCCccCCCcCeEECCC-CCEEE--eCCCCEEEECC-C-CCEEEE
Confidence 357889999999999999864 245667777766 57899999996 77777 45788999997 3 566777
Q ss_pred eccc-CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC-CCcEEEEEccCCCeEEEEEc------cccccEeEEEEec
Q psy307 375 YYGH-RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM-DCRVKLWEVYKEHRCVRTYY------GHRQAVRDICFNN 446 (1019)
Q Consensus 375 ~~gh-~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~-Dg~I~IWDl~~~~~~~~~l~------~H~~~V~sl~fsp 446 (1019)
+..+ ...+.++.+.++| +++++.+. ++.|..+|. .++.+..+. ++......+++.+
T Consensus 71 ~~~~~~~~~~~~~~~~dG--------------~~lv~~~~~~~~v~~vd~--~Gk~l~~~~~~~~~~~~~~~~~~v~~~~ 134 (276)
T 3no2_A 71 IAAPAGCEMQTARILPDG--------------NALVAWCGHPSTILEVNM--KGEVLSKTEFETGIERPHAQFRQINKNK 134 (276)
T ss_dssp EECCTTCEEEEEEECTTS--------------CEEEEEESTTEEEEEECT--TSCEEEEEEECCSCSSGGGSCSCCEECT
T ss_pred EcCCCCccccccEECCCC--------------CEEEEecCCCCEEEEEeC--CCCEEEEEeccCCCCcccccccCceECC
Confidence 7764 3468888888888 57777776 666666664 555555443 2223455668899
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE
Q psy307 447 TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ 526 (1019)
Q Consensus 447 dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg 526 (1019)
+|+++++.+.++.|..||.. |+.+.++..... ..++...++|+.++++
T Consensus 135 ~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~-------------------------------~~~~~~~~~g~~~v~~ 182 (276)
T 3no2_A 135 KGNYLVPLFATSEVREIAPN-GQLLNSVKLSGT-------------------------------PFSSAFLDNGDCLVAC 182 (276)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEEECSSC-------------------------------CCEEEECTTSCEEEEC
T ss_pred CCCEEEEecCCCEEEEECCC-CCEEEEEECCCC-------------------------------ccceeEcCCCCEEEEe
Confidence 99999999999999999998 998888765422 2234556788899888
Q ss_pred ecCCeEEEEEccCcccccceeEEeccc----cccceEEEEEcCCCCEEEEEeCC--------CeEEEEeC-CCCceeeee
Q psy307 527 SMDNKILIFSALNRFKLNRKKTFEGHM----VAGYACSLDFSPDMSYLISGDAD--------GKCYIWDW-KTTKLFKKW 593 (1019)
Q Consensus 527 s~Dg~I~iwd~~~~~~~~~~~~l~gh~----~~~~V~~v~fspdg~~Lasgs~D--------G~I~IWDl-~t~~~l~~l 593 (1019)
+.++.|..+|..++..+ ..+.... .-..+..+...++|.++++.... +..+++++ .+++.+-++
T Consensus 183 ~~~~~v~~~d~~tG~~~---w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~ 259 (276)
T 3no2_A 183 GDAHCFVQLNLESNRIV---RRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQL 259 (276)
T ss_dssp BTTSEEEEECTTTCCEE---EEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEE
T ss_pred CCCCeEEEEeCcCCcEE---EEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEe
Confidence 88889999998876433 3343221 11347888999999988876421 23355555 567777766
Q ss_pred ecc
Q psy307 594 KAH 596 (1019)
Q Consensus 594 ~~h 596 (1019)
..+
T Consensus 260 ~~~ 262 (276)
T 3no2_A 260 NDK 262 (276)
T ss_dssp CCT
T ss_pred cCc
Confidence 544
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.3e-09 Score=126.35 Aligned_cols=249 Identities=14% Similarity=0.092 Sum_probs=165.0
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEcc-CCC
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVY-KEH 426 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~-~~~ 426 (1019)
+.++++...++.|.++|. .+++.+.++... ..+..+.|+||| +++++++.|+.|.+||+. .+.
T Consensus 167 ~~~~V~~~~~~~V~viD~-~t~~v~~~i~~g-~~p~~v~~SpDG--------------r~lyv~~~dg~V~viD~~~~t~ 230 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDG-STYEIKTVLDTG-YAVHISRLSASG--------------RYLFVIGRDGKVNMIDLWMKEP 230 (567)
T ss_dssp GEEEEEETTTTEEEEEET-TTCCEEEEEECS-SCEEEEEECTTS--------------CEEEEEETTSEEEEEETTSSSC
T ss_pred ceEEEEeCCCCeEEEEEC-CCCeEEEEEeCC-CCccceEECCCC--------------CEEEEEcCCCeEEEEECCCCCC
Confidence 456777788999999999 455666666533 356789999999 688888999999999994 355
Q ss_pred eEEEEEccccccEeEEEEe----cCCCEEEEEEc-CCeEEEEECCCCceEEEEecCC------------ceEEEEEecCC
Q psy307 427 RCVRTYYGHRQAVRDICFN----NTGTNFISAGY-DRYLKLWDTESGECISRFTSRK------------VAYCVKFHPDE 489 (1019)
Q Consensus 427 ~~~~~l~~H~~~V~sl~fs----pdg~~l~S~s~-Dg~I~lWDl~t~~~i~~~~~~~------------~v~~v~~~p~~ 489 (1019)
+.+..+.... ....++|+ |+|++++++++ +++|.++|..+.+.+.++.... .+..+..++++
T Consensus 231 ~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~ 309 (567)
T 1qks_A 231 TTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR 309 (567)
T ss_dssp CEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred cEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCC
Confidence 5666665433 35789999 69998777665 5999999999999988876431 34566667765
Q ss_pred CeeeeccCCCce-eeeC------------CCCCcccEEEEcCCCCEEEEEe-cCCeEEEEEccCcccccceeE-E-eccc
Q psy307 490 DKQHLDIPVDMK-YIAD------------PTMHSMPAVTSSPNNKWLACQS-MDNKILIFSALNRFKLNRKKT-F-EGHM 553 (1019)
Q Consensus 490 ~~~~~~~~~~~~-~i~~------------~~~~~i~~v~~spdg~~Lasgs-~Dg~I~iwd~~~~~~~~~~~~-l-~gh~ 553 (1019)
....+....... .+.+ ........+.|+|+|+++++++ .++.|.++|+.++.....+.. - ..|.
T Consensus 310 ~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Php 389 (567)
T 1qks_A 310 PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHP 389 (567)
T ss_dssp SEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCC
T ss_pred CEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCC
Confidence 544433221111 1111 1122344678999999987765 578999999998743322211 0 0121
Q ss_pred cccceEEEEEcCCCCEE-EEEe-CCCeEEEEeCCC-------CceeeeeeccCCCEEEEEEcCCCCcEEEEE
Q psy307 554 VAGYACSLDFSPDMSYL-ISGD-ADGKCYIWDWKT-------TKLFKKWKAHDGVCISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 554 ~~~~V~~v~fspdg~~L-asgs-~DG~I~IWDl~t-------~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~ 616 (1019)
. ..+. + ++|++..+ +++. .+++|.++|..+ .+.++++....+.-..+..+|++..+.++.
T Consensus 390 g-~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~ 458 (567)
T 1qks_A 390 G-RGAN-F-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA 458 (567)
T ss_dssp T-TCEE-E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred c-ccee-e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEec
Confidence 1 1121 2 58875544 4443 568999999988 677888876544434577899985444433
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-09 Score=133.72 Aligned_cols=239 Identities=11% Similarity=0.047 Sum_probs=154.5
Q ss_pred CCCCCCCCeeeeCCCCC-----ceeeecCCCCCCccCCcccee-eeccCCCCeEEEEEcCCCCcEEEEeeCCCe------
Q psy307 292 DPTDYQGRSFLHPPHDV-----GTNLRSDTPPDRCFLPKTQVH-TWEGHTKGISAIRWFPKSAHLLLSCSMDCR------ 359 (1019)
Q Consensus 292 ~~~~~~gr~~~~~~~D~-----~v~lw~~~~~~~~~lp~~~i~-~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~------ 359 (1019)
..++++|+.++.+..++ .|.+|+..... .+. ++.+ ..+..++|+|| ++.|+.++.++.
T Consensus 130 ~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~-------~~~~~~~~--~~~~~~~wspD-g~~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK-------ELPDVLER--VKFSCMAWTHD-GKGMFYNAYPQQDGKSDG 199 (710)
T ss_dssp EEECTTSSEEEEEEEETTCSCEEEEEEETTTTE-------EEEEEEEE--ECSCCEEECTT-SSEEEEEECCCCSSCCSS
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCC-------CCcccccC--cccceEEEEeC-CCEEEEEEECCccccccc
Confidence 45788999988654432 78888876432 222 2222 23778999997 667777776655
Q ss_pred ----------EEEEecCCCc---EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC-----CCcEEEEE
Q psy307 360 ----------VKLWEVYKER---RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM-----DCRVKLWE 421 (1019)
Q Consensus 360 ----------I~IWdl~~~~---~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~-----Dg~I~IWD 421 (1019)
|++|++.+.. .++.....|...+..+.|+|||. +|+.++. +..|.+||
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~--------------~l~~~~~~~~~~~~~l~~~d 265 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR--------------YVLLSIREGCDPVNRLWYCD 265 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC--------------EEEEEEECSSSSCCEEEEEE
T ss_pred cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC--------------EEEEEEEccCCCccEEEEEE
Confidence 9999995443 23333334566678889999884 4444433 57899999
Q ss_pred ccC------CCeEEEEEccccccEeEEEEecCCCEEEEEEcC----CeEEEEECCCCce--EEEEecCCceEEEEEecCC
Q psy307 422 VYK------EHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD----RYLKLWDTESGEC--ISRFTSRKVAYCVKFHPDE 489 (1019)
Q Consensus 422 l~~------~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~D----g~I~lWDl~t~~~--i~~~~~~~~v~~v~~~p~~ 489 (1019)
+.. .......+..+...+.. .|+++|+.|+..+.+ +.|.+||+.++.. ...+..+.
T Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~----------- 333 (710)
T 2xdw_A 266 LQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH----------- 333 (710)
T ss_dssp GGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-----------
T ss_pred CcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC-----------
Confidence 965 33245556666666655 588999988777654 3599999887631 11121110
Q ss_pred CeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCe--EEEEEccCcccccceeEEeccccccceEEEEEcCCC
Q psy307 490 DKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNK--ILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM 567 (1019)
Q Consensus 490 ~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~--I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg 567 (1019)
....+..+++++++.++++...++. |.+|++.++. ....+..+. +.+..++++|++
T Consensus 334 -----------------~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~---~~~~l~~~~--~~v~~~~~s~d~ 391 (710)
T 2xdw_A 334 -----------------EKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA---LLKIFPLEV--GSVVGYSGQKKD 391 (710)
T ss_dssp -----------------SSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC---EEEEECCCS--SEEEEEECCTTC
T ss_pred -----------------CCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC---EEEecCCCC--ceEEEEecCCCC
Confidence 0123455677777788888888885 5566664442 234455553 678889999999
Q ss_pred CEEEEE-e---CCCeEEEEeCCCCc
Q psy307 568 SYLISG-D---ADGKCYIWDWKTTK 588 (1019)
Q Consensus 568 ~~Lasg-s---~DG~I~IWDl~t~~ 588 (1019)
..++.. + ..++|++||+.+++
T Consensus 392 ~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 392 TEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp SEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEEEEeCCCCCCEEEEEECCCCc
Confidence 866533 2 34789999999887
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-08 Score=117.42 Aligned_cols=240 Identities=9% Similarity=0.032 Sum_probs=158.6
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
.....|+|+++ +.++++...++.|++||.. .+........ ..... ++|++++ +.|+++..++
T Consensus 131 ~~P~~la~d~~-g~lyv~d~~~~~I~~id~~-~g~~~~~~~~-~~~~~-ia~~~~g--------------~~l~~~d~~~ 192 (409)
T 3hrp_A 131 KYMWGIAAVGN-NTVLAYQRDDPRVRLISVD-DNKVTTVHPG-FKGGK-PAVTKDK--------------QRVYSIGWEG 192 (409)
T ss_dssp CCEEEEEECST-TEEEEEETTTTEEEEEETT-TTEEEEEEET-CCBCB-CEECTTS--------------SEEEEEBSST
T ss_pred CCceEEEEeCC-CCEEEEecCCCcEEEEECC-CCEEEEeecc-CCCCc-eeEecCC--------------CcEEEEecCC
Confidence 36889999986 7788888888999999984 3444433333 22233 8888887 5777777765
Q ss_pred --cEEEEEccCCCeEEEEE---cc-ccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCC
Q psy307 416 --RVKLWEVYKEHRCVRTY---YG-HRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDE 489 (1019)
Q Consensus 416 --~I~IWDl~~~~~~~~~l---~~-H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~ 489 (1019)
.|.+|+...... ...+ .. +...+.+++++|++..|+.+..++.|..||..++... .+.... ..+
T Consensus 193 ~~~I~~~d~~~~~~-~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~--------~~g 262 (409)
T 3hrp_A 193 THTVYVYMKASGWA-PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLE--------LSG 262 (409)
T ss_dssp TCEEEEEEGGGTTC-EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-EEEECC--------CCS
T ss_pred CceEEEEEcCCCce-eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEeccc--------ccC
Confidence 788888754433 2222 22 4566788999996556666777889999999876532 111000 000
Q ss_pred CeeeeccCCCceeeeCCCCCcccEEEEcCC-CCEEEEEecCCeEEEEEccCcccccceeEEeccc-------------cc
Q psy307 490 DKQHLDIPVDMKYIADPTMHSMPAVTSSPN-NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHM-------------VA 555 (1019)
Q Consensus 490 ~~~~~~~~~~~~~i~~~~~~~i~~v~~spd-g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~-------------~~ 555 (1019)
.....+...++++|+ +.++++...++.|+.|+.... ...+.++. .-
T Consensus 263 ---------------~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~ 322 (409)
T 3hrp_A 263 ---------------SLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALF 322 (409)
T ss_dssp ---------------CCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBC
T ss_pred ---------------CCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEe
Confidence 000001137899995 666666677889999987643 22232321 01
Q ss_pred cceEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeeeecc---------------CCCEEEEEEcCCCCcEEEEEeCC
Q psy307 556 GYACSLDFSPDMSYLISGD-ADGKCYIWDWKTTKLFKKWKAH---------------DGVCISTLWHPHEPSKVVTAGWD 619 (1019)
Q Consensus 556 ~~V~~v~fspdg~~Lasgs-~DG~I~IWDl~t~~~l~~l~~h---------------~~~V~sl~~sp~~~~~l~s~s~D 619 (1019)
.....++++|+|+++++-+ .+++|+.||+.++.. .++.++ -....++++++++ .++++-..+
T Consensus 323 ~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g-~lyVad~~n 400 (409)
T 3hrp_A 323 AQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEG-GYWIAEAWG 400 (409)
T ss_dssp SSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS-EEEEEESTT
T ss_pred CCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC-CEEEEECCC
Confidence 3478999999999777777 789999999877764 444443 1357899999986 677777777
Q ss_pred CcEEEE
Q psy307 620 AATAKV 625 (1019)
Q Consensus 620 g~I~iw 625 (1019)
++|+++
T Consensus 401 ~~Ir~i 406 (409)
T 3hrp_A 401 KAIRKY 406 (409)
T ss_dssp CEEEEE
T ss_pred CeEEEE
Confidence 787665
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.6e-08 Score=104.60 Aligned_cols=265 Identities=6% Similarity=-0.041 Sum_probs=171.8
Q ss_pred CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC
Q psy307 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM 413 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~ 413 (1019)
....+.++++.++ +.+.++...++.|.+||.. .......+..+...+.++++.++| .++++...
T Consensus 18 ~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g--------------~l~v~~~~ 81 (300)
T 2qc5_A 18 PDSGPYGITSSED-GKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLG--------------DIWFTENG 81 (300)
T ss_dssp TTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS--------------CEEEEETT
T ss_pred CCCCcceeeECCC-CCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCC--------------CEEEEecC
Confidence 4457889999996 7777777778999999985 222222233334567888888777 56666666
Q ss_pred CCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEE-Ee-cCCceEEEEEecCCCe
Q psy307 414 DCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISR-FT-SRKVAYCVKFHPDEDK 491 (1019)
Q Consensus 414 Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~-~~-~~~~v~~v~~~p~~~~ 491 (1019)
++.|..||.. ..............+.++++.++|+.+++...++.|..||.. ++.... +. ....+..+++.+++..
T Consensus 82 ~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l 159 (300)
T 2qc5_A 82 ANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNAL 159 (300)
T ss_dssp TTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSE
T ss_pred CCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCE
Confidence 7889999985 333222333345678999999999887777668899999987 655432 22 2356788999888764
Q ss_pred eeeccCCCc----------eeeeC-CCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEE
Q psy307 492 QHLDIPVDM----------KYIAD-PTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560 (1019)
Q Consensus 492 ~~~~~~~~~----------~~i~~-~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~ 560 (1019)
.+....... ..+.. .....+..++++++|.++++....+.|.+|+.... . ..+........+.+
T Consensus 160 ~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~-~----~~~~~~~~~~~~~~ 234 (300)
T 2qc5_A 160 WFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGE-I----SEYDIPTPNARPHA 234 (300)
T ss_dssp EEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCC-E----EEEECSSTTCCEEE
T ss_pred EEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCc-E----EEEECCCCCCCceE
Confidence 333221111 11111 12234668899999987777777789999998322 1 11211111255789
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceee-eeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 561 LDFSPDMSYLISGDADGKCYIWDWKTTKLFK-KWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 561 v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~-~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
++++++|++.++...++.|..||. +++... .+......+.++++.++| .++++.. . .|..+
T Consensus 235 i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 235 ITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDG-SVWFALK-C-KIGKL 296 (300)
T ss_dssp EEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTS-CEEEECS-S-EEEEE
T ss_pred EEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCC-CEEEEcc-C-ceEEe
Confidence 999999997777767789999998 454332 223334567889999887 3444443 4 55443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.17 E-value=7e-09 Score=115.96 Aligned_cols=246 Identities=10% Similarity=0.028 Sum_probs=162.5
Q ss_pred CCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec
Q psy307 297 QGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY 376 (1019)
Q Consensus 297 ~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~ 376 (1019)
.++.++....++.|.+++... .+.+.++.. ......++++++ +.+.++...++.|.+||. .+.+....+.
T Consensus 53 ~~~lyv~~~~~~~v~viD~~t-------~~~~~~i~~-~~~p~~i~~~~~-g~lyv~~~~~~~v~~iD~-~t~~~~~~i~ 122 (328)
T 3dsm_A 53 DGIGWIVVNNSHVIFAIDINT-------FKEVGRITG-FTSPRYIHFLSD-EKAYVTQIWDYRIFIINP-KTYEITGYIE 122 (328)
T ss_dssp TTEEEEEEGGGTEEEEEETTT-------CCEEEEEEC-CSSEEEEEEEET-TEEEEEEBSCSEEEEEET-TTTEEEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECcc-------cEEEEEcCC-CCCCcEEEEeCC-CeEEEEECCCCeEEEEEC-CCCeEEEEEE
Confidence 466777777788899997653 345566643 467889999886 555555558999999999 4455555544
Q ss_pred ccC-----ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe-CCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCE
Q psy307 377 GHR-----QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS-MDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTN 450 (1019)
Q Consensus 377 gh~-----~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs-~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~ 450 (1019)
... .....+++ .++ .++++.. .++.|.+||+ .+.+....+... .....++++|+|+.
T Consensus 123 ~g~~~~~~~~p~~i~~-~~~--------------~lyv~~~~~~~~v~viD~-~t~~~~~~i~~g-~~p~~i~~~~dG~l 185 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQ-YGK--------------YVYVNCWSYQNRILKIDT-ETDKVVDELTIG-IQPTSLVMDKYNKM 185 (328)
T ss_dssp CTTCCTTTCBCCCEEE-ETT--------------EEEEEECTTCCEEEEEET-TTTEEEEEEECS-SCBCCCEECTTSEE
T ss_pred cCCccccCCCcceEEE-ECC--------------EEEEEcCCCCCEEEEEEC-CCCeEEEEEEcC-CCccceEEcCCCCE
Confidence 322 13445555 222 3444443 4899999999 445555555432 33567899999987
Q ss_pred EEEEEcC----------CeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC
Q psy307 451 FISAGYD----------RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN 520 (1019)
Q Consensus 451 l~S~s~D----------g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg 520 (1019)
++++..+ +.|.+||..+++....+.... ......++++|++
T Consensus 186 ~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-----------------------------g~~p~~la~~~d~ 236 (328)
T 3dsm_A 186 WTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-----------------------------GDWPSEVQLNGTR 236 (328)
T ss_dssp EEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-----------------------------TCCCEEEEECTTS
T ss_pred EEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC-----------------------------CCCceeEEEecCC
Confidence 7776655 789999999988766554311 1234567778888
Q ss_pred CEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcC-CCCEEEEE----eCCCeEEEEeCCCCceeeeeec
Q psy307 521 KWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP-DMSYLISG----DADGKCYIWDWKTTKLFKKWKA 595 (1019)
Q Consensus 521 ~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp-dg~~Lasg----s~DG~I~IWDl~t~~~l~~l~~ 595 (1019)
+.|.+... .|.+||..++.... ...+... ......++++| ++.+.++. ..++.|.+||.. ++.+.++..
T Consensus 237 ~~lyv~~~--~v~~~d~~t~~~~~-~~~~~~~--~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 237 DTLYWINN--DIWRMPVEADRVPV-RPFLEFR--DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp CEEEEESS--SEEEEETTCSSCCS-SCSBCCC--SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred CEEEEEcc--EEEEEECCCCceee-eeeecCC--CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence 88877654 89999997654221 1111111 24578899999 56666665 578999999998 999888865
Q ss_pred cCCCEEEEEE
Q psy307 596 HDGVCISTLW 605 (1019)
Q Consensus 596 h~~~V~sl~~ 605 (1019)
-.+ ...++|
T Consensus 311 G~~-P~~~~~ 319 (328)
T 3dsm_A 311 GII-PGAFCW 319 (328)
T ss_dssp EES-EEEEEE
T ss_pred ccC-cceEEE
Confidence 333 345554
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=4.3e-08 Score=109.44 Aligned_cols=230 Identities=10% Similarity=0.001 Sum_probs=147.2
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCc
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCR 416 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~ 416 (1019)
-..+.+|+|+++.+++++..++.|.+||.... .. ..+. ....+.++.++++| .++++ +.+ .
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~-~~-~~~~-~~~~v~~i~~~~dg--------------~l~v~-~~~-g 110 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASG-RK-TVHA-LPFMGSALAKISDS--------------KQLIA-SDD-G 110 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTT-EE-EEEE-CSSCEEEEEEEETT--------------EEEEE-ETT-E
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCC-cE-EEEE-CCCcceEEEEeCCC--------------eEEEE-ECC-C
Confidence 35678999987888888888999999998543 32 2222 34568888888887 44444 344 4
Q ss_pred EEEEEccCCCeEEEEEcc---c-cccEeEEEEecCCCEEEEEEcC------CeEEEEECCCCceEEEEecCCceEEEEEe
Q psy307 417 VKLWEVYKEHRCVRTYYG---H-RQAVRDICFNNTGTNFISAGYD------RYLKLWDTESGECISRFTSRKVAYCVKFH 486 (1019)
Q Consensus 417 I~IWDl~~~~~~~~~l~~---H-~~~V~sl~fspdg~~l~S~s~D------g~I~lWDl~t~~~i~~~~~~~~v~~v~~~ 486 (1019)
|.+||... +........ + ...+.+++++|+|+.+++...+ +.|..+| +++.......
T Consensus 111 l~~~d~~~-g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~---------- 177 (326)
T 2ghs_A 111 LFLRDTAT-GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD---------- 177 (326)
T ss_dssp EEEEETTT-CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE----------
T ss_pred EEEEECCC-CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC----------
Confidence 89999843 333222211 1 2468899999999876655432 3455555 3432211110
Q ss_pred cCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE-ecCCeEEEEEcc--CcccccceeEEec-cccccceEEEE
Q psy307 487 PDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ-SMDNKILIFSAL--NRFKLNRKKTFEG-HMVAGYACSLD 562 (1019)
Q Consensus 487 p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg-s~Dg~I~iwd~~--~~~~~~~~~~l~g-h~~~~~V~~v~ 562 (1019)
......++|+|+|+.++.+ +.++.|.+|++. ++..+.....+.. ....+.+..++
T Consensus 178 ---------------------~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~ 236 (326)
T 2ghs_A 178 ---------------------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSV 236 (326)
T ss_dssp ---------------------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEE
T ss_pred ---------------------CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeE
Confidence 0123467889999876554 557899999985 3301111112211 11124567899
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEc-CCCCcEEEEEeCCC
Q psy307 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWH-PHEPSKVVTAGWDA 620 (1019)
Q Consensus 563 fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~s-p~~~~~l~s~s~Dg 620 (1019)
++++|.+.++...++.|.+||. +++.+..+..+...+.+++|. +++..++++...++
T Consensus 237 ~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 237 CDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp ECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred ECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence 9999998887777789999998 678888887777789999998 88755555555543
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.8e-09 Score=130.87 Aligned_cols=240 Identities=11% Similarity=-0.016 Sum_probs=143.4
Q ss_pred cCCCCeEEEEEcCCCCcEEEEeeC-C----CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 333 GHTKGISAIRWFPKSAHLLLSCSM-D----CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLaSgs~-D----g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
+|...+..++|||| |++|+.++. + ..|++||+.++ +.+.. ..+...+..++|+|| . .
T Consensus 160 ~~~~~~~~~~~SPD-G~~la~~~~~~G~e~~~i~v~dl~tg-~~~~~-~~~~~~~~~~~wspD-~--------------~ 221 (741)
T 1yr2_A 160 DGATALDAWAASDD-GRLLAYSVQDGGSDWRTVKFVGVADG-KPLAD-ELKWVKFSGLAWLGN-D--------------A 221 (741)
T ss_dssp ---EEEEEEEECTT-SSEEEEEEEETTCSEEEEEEEETTTC-CEEEE-EEEEEESCCCEESTT-S--------------E
T ss_pred CCCEEEEeEEECCC-CCEEEEEEcCCCCceEEEEEEECCCC-CCCCc-cCCCceeccEEEECC-C--------------E
Confidence 45557889999997 555555443 3 35999999544 33322 111111245566666 4 3
Q ss_pred EEEEeCC--------------CcEEEEEccCCC---eEEEEEccccccEeEEEEecCCCEEEEEEcCC-----eEEEEEC
Q psy307 408 LLSCSMD--------------CRVKLWEVYKEH---RCVRTYYGHRQAVRDICFNNTGTNFISAGYDR-----YLKLWDT 465 (1019)
Q Consensus 408 L~sgs~D--------------g~I~IWDl~~~~---~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg-----~I~lWDl 465 (1019)
|+.++.+ ..|++|++.+.. .++.....+...+.++.|+|||++|+..+.++ .|.+||+
T Consensus 222 l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~ 301 (741)
T 1yr2_A 222 LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARV 301 (741)
T ss_dssp EEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEE
T ss_pred EEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEEC
Confidence 3333333 348899985443 23333334445688999999999988877654 7999998
Q ss_pred CCC--ceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC----CeEEEEEccC
Q psy307 466 ESG--ECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD----NKILIFSALN 539 (1019)
Q Consensus 466 ~t~--~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D----g~I~iwd~~~ 539 (1019)
.++ ++...+..+. ...... ++|+|+.|+..+.+ +.|.+||+.+
T Consensus 302 ~~~~~~~~~~l~~~~------------------------------~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 302 TNGKIGPVTALIPDL------------------------------KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp ETTEECCCEEEECSS------------------------------SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred CCCCCcccEEecCCC------------------------------CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 776 3122222111 111112 34778888877753 4699999876
Q ss_pred cccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeeeeec-cCCCEEEEEEcCCCCcEEEEEe
Q psy307 540 RFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWK-TTKLFKKWKA-HDGVCISTLWHPHEPSKVVTAG 617 (1019)
Q Consensus 540 ~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~-t~~~l~~l~~-h~~~V~sl~~sp~~~~~l~s~s 617 (1019)
.. ......+..+. ..+..++++ ++.++++...||..+||.+. +++....+.. +.+.+..+.++|++..++++.+
T Consensus 351 ~~-~~~~~l~~~~~--~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~s 426 (741)
T 1yr2_A 351 ST-PRFDTVVPESK--DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFS 426 (741)
T ss_dssp SS-CEEEEEECCCS--SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEE
T ss_pred Cc-cccEEEecCCC--CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEc
Confidence 42 01122233332 346677887 66788888889987777554 4666666665 3567889999998865555554
Q ss_pred CC---CcEEEE
Q psy307 618 WD---AATAKV 625 (1019)
Q Consensus 618 ~D---g~I~iw 625 (1019)
.. ++|+.|
T Consensus 427 s~~~P~~i~~~ 437 (741)
T 1yr2_A 427 SFTQPATVLAL 437 (741)
T ss_dssp ETTEEEEEEEE
T ss_pred CCCCCCEEEEE
Confidence 33 555443
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=8.7e-08 Score=104.06 Aligned_cols=263 Identities=7% Similarity=-0.048 Sum_probs=169.4
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVR 373 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~ 373 (1019)
.+++|+.++....++.|..|+.. ... ....+..+...+.++++.++ +.++++...++.|..||.. ......
T Consensus 22 ~d~~g~l~v~~~~~~~v~~~d~~-~~~------~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~-g~~~~~ 92 (299)
T 2z2n_A 22 VSDKGKVWITQHKANMISCINLD-GKI------TEYPLPTPDAKVMCLTISSD-GEVWFTENAANKIGRITKK-GIIKEY 92 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-CCE------EEEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred ECCCCCEEEEecCCCcEEEEcCC-CCe------EEecCCcccCceeeEEECCC-CCEEEeCCCCCeEEEECCC-CcEEEE
Confidence 46789988887767888888655 111 01112234578999999995 6777777778999999974 222112
Q ss_pred EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE
Q psy307 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS 453 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S 453 (1019)
.+......+.++++.++| .++++...++.|.+||. ...........+...+.+++++++|+.+++
T Consensus 93 ~~~~~~~~~~~i~~~~~g--------------~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~ 157 (299)
T 2z2n_A 93 TLPNPDSAPYGITEGPNG--------------DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFT 157 (299)
T ss_dssp ECSSTTCCEEEEEECTTS--------------CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEE
T ss_pred eCCCcCCCceeeEECCCC--------------CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEE
Confidence 222344567788888777 56676667889999998 433333333445567899999999987777
Q ss_pred EEcCCeEEEEECCCCceEEE-Ee-cCCceEEEEEecCCCeeeeccCC----------Cceee-eCCCCCcccEEEEcCCC
Q psy307 454 AGYDRYLKLWDTESGECISR-FT-SRKVAYCVKFHPDEDKQHLDIPV----------DMKYI-ADPTMHSMPAVTSSPNN 520 (1019)
Q Consensus 454 ~s~Dg~I~lWDl~t~~~i~~-~~-~~~~v~~v~~~p~~~~~~~~~~~----------~~~~i-~~~~~~~i~~v~~spdg 520 (1019)
...++.|..||. +++.... .. ....+..+++.+++...+..... ..... .......+.+++++++|
T Consensus 158 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g 236 (299)
T 2z2n_A 158 ENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGI 236 (299)
T ss_dssp ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTT
T ss_pred eCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCC
Confidence 666789999999 6665443 22 23457889998887643332111 11111 11123456789999999
Q ss_pred CEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy307 521 KWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK 588 (1019)
Q Consensus 521 ~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~ 588 (1019)
..+++...++.|.+||.. + . ...+........+.++++ ++|.++++.+ .+.|..++.++++
T Consensus 237 ~l~v~~~~~~~i~~~d~~-g-~---~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 237 DLWFTEWGANKIGRLTSN-N-I---IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp CEEEEETTTTEEEEEETT-T-E---EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred CEEEeccCCceEEEECCC-C-c---eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 877766678999999984 2 1 122221111255888999 9998777665 5667777876653
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-07 Score=107.31 Aligned_cols=264 Identities=6% Similarity=-0.095 Sum_probs=161.3
Q ss_pred CcEEEEeeC--CC---eEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe----------
Q psy307 348 AHLLLSCSM--DC---RVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS---------- 412 (1019)
Q Consensus 348 g~lLaSgs~--Dg---~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs---------- 412 (1019)
++.++++.. .+ +|.++|.. ..+.+.++.....+ .++++|||+ .++.+.
T Consensus 32 ~~~~yv~~~~~~~~~~~v~v~D~~-t~~~~~~i~~g~~p--~i~~spDg~--------------~lyv~n~~~~~~~rg~ 94 (373)
T 2mad_H 32 GRRSYINLPAHHSAIIQQWVLDAG-SGSILGHVNGGFLP--NPVAAHSGS--------------EFALASTSFSRIAKGK 94 (373)
T ss_pred CCEEEEeCCcccCCccEEEEEECC-CCeEEEEecCCCCC--CeEECCCCC--------------EEEEEeccccccccCC
Confidence 455555543 22 88999984 55666666654444 899999994 555543
Q ss_pred CCCcEEEEEccCCCeEEEEEccc-------cccEeEEEEecCCCEEEEEEc--CCeEEEEECCCCceEEE-EecCCceE-
Q psy307 413 MDCRVKLWEVYKEHRCVRTYYGH-------RQAVRDICFNNTGTNFISAGY--DRYLKLWDTESGECISR-FTSRKVAY- 481 (1019)
Q Consensus 413 ~Dg~I~IWDl~~~~~~~~~l~~H-------~~~V~sl~fspdg~~l~S~s~--Dg~I~lWDl~t~~~i~~-~~~~~~v~- 481 (1019)
.++.|.+||.. +.+.+..+.-. ......+.|+|||++++.++. ++.|.++| .+++.+.. +.....+.
T Consensus 95 ~~~~v~viD~~-t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~ 172 (373)
T 2mad_H 95 RTDYVEVFDPV-TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHI 172 (373)
T ss_pred CCCeEEEEECC-CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEE
Confidence 46889999994 44444443221 123457899999999998874 57899999 99998888 65433211
Q ss_pred -------EEEEecCCCeeeeccCCCcee-eeC-----CCCCc-ccEEEEcCCCCEEEEEecCCeEEEEEccCccccccee
Q psy307 482 -------CVKFHPDEDKQHLDIPVDMKY-IAD-----PTMHS-MPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKK 547 (1019)
Q Consensus 482 -------~v~~~p~~~~~~~~~~~~~~~-i~~-----~~~~~-i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~ 547 (1019)
-+.+++++....++. ..... ... ..... .....+.+++..++..+..+.+.+.|+..... ....
T Consensus 173 ~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~-~v~~ 250 (373)
T 2mad_H 173 HPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKA 250 (373)
T ss_pred EeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc-eEee
Confidence 133445555554444 21111 000 00011 11234455555544445788999999865421 1112
Q ss_pred EEeccc--------cccceEEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCC
Q psy307 548 TFEGHM--------VAGYACSLDFSPDMSYLISGDA----------DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609 (1019)
Q Consensus 548 ~l~gh~--------~~~~V~~v~fspdg~~Lasgs~----------DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~ 609 (1019)
.+.-.. .......+.++||++.++.+.. .+.|.++|..+++.+.++.... ...+++|+|++
T Consensus 251 ~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s~Dg 329 (373)
T 2mad_H 251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISVAQDG 329 (373)
T ss_pred eeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEECCCC
Confidence 221100 0122334789999998777643 3579999999999999986433 57899999999
Q ss_pred CcEEEEEe-CCCcEEEEeccceeeee
Q psy307 610 PSKVVTAG-WDAATAKVQDANIVKIA 634 (1019)
Q Consensus 610 ~~~l~s~s-~Dg~I~iwwd~~i~ki~ 634 (1019)
...++++. .++.|.+ +|....++.
T Consensus 330 ~~~l~v~~~~~~~V~V-iD~~t~~vv 354 (373)
T 2mad_H 330 GPDLYALSAGTEVLHI-YDAGAGDQD 354 (373)
T ss_pred CeEEEEEcCCCCeEEE-EECCCCCEE
Confidence 54677776 4788855 455544444
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.10 E-value=3.4e-08 Score=111.81 Aligned_cols=278 Identities=10% Similarity=-0.021 Sum_probs=171.7
Q ss_pred cCCCCcEEEEeeC-----CCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEE
Q psy307 344 FPKSAHLLLSCSM-----DCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVK 418 (1019)
Q Consensus 344 spd~g~lLaSgs~-----Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~ 418 (1019)
.|+ ++.+++... ++.|.+.|. ...+.+.++..-..+ . +.++|||..+..+..+.+.. .-|..++.|.
T Consensus 41 ~pd-~~~vyV~~~~~~~~~~~V~ViD~-~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~----~~G~~~~~Vs 112 (386)
T 3sjl_D 41 APD-ARRVYVNDPAHFAAVTQQFVIDG-EAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRI----ARGERTDYVE 112 (386)
T ss_dssp CCC-TTEEEEEECGGGCSSEEEEEEET-TTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEET----TEEEEEEEEE
T ss_pred CCC-CCEEEEEcCcccCCCCEEEEEEC-CCCeEEEEEECCCCC-c-EEECCCCCEEEEEccccccc----ccCCCCCEEE
Confidence 454 445555443 689999998 556777777655555 3 99999995322111110000 0012467899
Q ss_pred EEEccCCCeEEEEEccc-------cccEeEEEEecCCCEEEEEEc--CCeEEEEECCCCceEEEEecCCc----e----E
Q psy307 419 LWEVYKEHRCVRTYYGH-------RQAVRDICFNNTGTNFISAGY--DRYLKLWDTESGECISRFTSRKV----A----Y 481 (1019)
Q Consensus 419 IWDl~~~~~~~~~l~~H-------~~~V~sl~fspdg~~l~S~s~--Dg~I~lWDl~t~~~i~~~~~~~~----v----~ 481 (1019)
+||. .+.+.+..+.-. ......+.|+|||++++.+.. ++.|.++|+.+++.+.++..... + .
T Consensus 113 viD~-~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~ 191 (386)
T 3sjl_D 113 VFDP-VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT 191 (386)
T ss_dssp EECT-TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred EEEC-CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCce
Confidence 9999 445555554321 124556799999999888874 68999999999999998875431 1 1
Q ss_pred EEEEecCCCeeeeccCCCcee------eeCCCCCcc-cEEEE-cCCCCEEEEEecCCeEEEEEccCcccccceeEEe---
Q psy307 482 CVKFHPDEDKQHLDIPVDMKY------IADPTMHSM-PAVTS-SPNNKWLACQSMDNKILIFSALNRFKLNRKKTFE--- 550 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~------i~~~~~~~i-~~v~~-spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~--- 550 (1019)
-+..++++....+......+. ........+ ....| .++|++++ .+.+|+|+++|+.+... .....+.
T Consensus 192 ~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~-~v~~~~~~~~ 269 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA-KFLPAVEALT 269 (386)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC-EECCCEESSC
T ss_pred eEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcc-eeecceeccc
Confidence 246788888777765432221 111111122 12355 46776555 55689999999875421 1111111
Q ss_pred ------ccccccceEEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEE
Q psy307 551 ------GHMVAGYACSLDFSPDMSYLISGDA----------DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVV 614 (1019)
Q Consensus 551 ------gh~~~~~V~~v~fspdg~~Lasgs~----------DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~ 614 (1019)
+.. .+....++++|+++.++.... .+.|.+.|+++++.+..+..-. .++++++++++..+|+
T Consensus 270 ~~~~~~g~~-p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~~~~lavs~D~~~~ly 347 (386)
T 3sjl_D 270 EAERADGWR-PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINVSQDEKPLLY 347 (386)
T ss_dssp HHHHHTTEE-ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECSSSSCEEE
T ss_pred ccccccccc-CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-CcceEEECCCCCeEEE
Confidence 100 012234677999998777643 2579999999999999987533 6789999999853554
Q ss_pred E-EeCCCcEEEEeccceeeeee
Q psy307 615 T-AGWDAATAKVQDANIVKIAV 635 (1019)
Q Consensus 615 s-~s~Dg~I~iwwd~~i~ki~~ 635 (1019)
+ ...++.|.++ |....+...
T Consensus 348 ~tn~~~~~VsVi-D~~t~k~~~ 368 (386)
T 3sjl_D 348 ALSTGDKTLYIH-DAESGEELR 368 (386)
T ss_dssp EEETTTTEEEEE-ETTTCCEEE
T ss_pred EEcCCCCeEEEE-ECCCCcEEE
Confidence 4 5568888554 555555443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-08 Score=110.92 Aligned_cols=237 Identities=10% Similarity=0.092 Sum_probs=153.8
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
..+..+..+........|+|++..+++++..++.|..|+. .+. ...+..+...+..++++++|
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~--~~~~~~~~~~~~gl~~d~dG-------------- 97 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT--VDVLLDATAFTNGNAVDAQQ-------------- 97 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC--EEEEEESCSCEEEEEECTTS--------------
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC--EEEEeCCCCccceeeECCCC--------------
Confidence 3445555566678889999976568888889999999997 332 34455566778889998888
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEc---cc-cccEeEEEEecCCCEEEE----EEc-------------CCeEEEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYY---GH-RQAVRDICFNNTGTNFIS----AGY-------------DRYLKLWD 464 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~---~H-~~~V~sl~fspdg~~l~S----~s~-------------Dg~I~lWD 464 (1019)
+++++...++.|.+|+.. +....... +. ...+.+++++++|+.+++ |.. .+.|..||
T Consensus 98 ~l~v~~~~~~~v~~~~~~--g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d 175 (305)
T 3dr2_A 98 RLVHCEHGRRAITRSDAD--GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP 175 (305)
T ss_dssp CEEEEETTTTEEEEECTT--SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred CEEEEECCCCEEEEECCC--CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence 555555556889999974 33222211 11 234678999999998776 221 24566666
Q ss_pred CCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC------CeEEEEEcc
Q psy307 465 TESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD------NKILIFSAL 538 (1019)
Q Consensus 465 l~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D------g~I~iwd~~ 538 (1019)
..+++..... . ......++|+|+++.|+++... +.|.+|++.
T Consensus 176 ~~~g~~~~~~-~-------------------------------~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~ 223 (305)
T 3dr2_A 176 PDGSPLQRMA-D-------------------------------LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWR 223 (305)
T ss_dssp SSSCCCEEEE-E-------------------------------ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEE
T ss_pred CCCCcEEEEe-c-------------------------------CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEec
Confidence 6555433211 0 0123457888999877777655 789999987
Q ss_pred CcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeC
Q psy307 539 NRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGW 618 (1019)
Q Consensus 539 ~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~ 618 (1019)
... +.....+... ..+.+..++++++|++.+ ++.+| |.+|+. .++.+..+..+. .+.+++|.|++. .|+.++.
T Consensus 224 ~~~-l~~~~~~~~~-~~~~pdgi~~d~~G~lwv-~~~~g-v~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~-~L~it~~ 296 (305)
T 3dr2_A 224 DGA-LHDRRHFASV-PDGLPDGFCVDRGGWLWS-SSGTG-VCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQ-RLFITGG 296 (305)
T ss_dssp TTE-EEEEEEEECC-SSSCCCSEEECTTSCEEE-CCSSE-EEEECT-TSCEEEEEECSS-CCCEEEECTTSC-EEEEEET
T ss_pred CCC-ccCCeEEEEC-CCCCCCeEEECCCCCEEE-ecCCc-EEEECC-CCCEEEEEECCC-ceeEEEEeCCCC-EEEEEcC
Confidence 543 2212222111 123456789999999554 44554 999997 677887777665 578999998874 5555555
Q ss_pred CC
Q psy307 619 DA 620 (1019)
Q Consensus 619 Dg 620 (1019)
++
T Consensus 297 ~~ 298 (305)
T 3dr2_A 297 PC 298 (305)
T ss_dssp TE
T ss_pred Ce
Confidence 53
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.3e-07 Score=105.64 Aligned_cols=260 Identities=8% Similarity=-0.120 Sum_probs=154.9
Q ss_pred CCCCeeeeCCC--CC---ceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEee----------CCCeE
Q psy307 296 YQGRSFLHPPH--DV---GTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCS----------MDCRV 360 (1019)
Q Consensus 296 ~~gr~~~~~~~--D~---~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs----------~Dg~I 360 (1019)
++++.+..... .. .|.+++... .+.+.++.....+ .++++|| ++.|+.+. .++.|
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t-------~~~~~~i~~g~~p--~i~~spD-g~~lyv~n~~~~~~~rg~~~~~v 99 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGS-------GSILGHVNGGFLP--NPVAAHS-GSEFALASTSFSRIAKGKRTDYV 99 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCC-------CeEEEEecCCCCC--CeEECCC-CCEEEEEeccccccccCCCCCeE
Confidence 45555444432 22 567776542 2345555544444 8999997 56666654 47889
Q ss_pred EEEecCCCcEEEEEeccc-------CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC--CCcEEEEEccCCCeEEEE
Q psy307 361 KLWEVYKERRCVRTYYGH-------RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM--DCRVKLWEVYKEHRCVRT 431 (1019)
Q Consensus 361 ~IWdl~~~~~~~~~~~gh-------~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~--Dg~I~IWDl~~~~~~~~~ 431 (1019)
.+||.. ..+.+..+.-. ...-..+.|+||| ++|+.++. ++.|.++| . +++.+..
T Consensus 100 ~viD~~-t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG--------------~~l~v~n~~~~~~v~viD-~-t~~~~~~ 162 (373)
T 2mad_H 100 EVFDPV-TFLPIADIELPDAPRFDVGPYSWMNANTPNN--------------ADLLFFQFAAGPAVGLVV-Q-GGSSDDQ 162 (373)
T ss_pred EEEECC-CCcEEEEEECCCccccccCCCccceEECCCC--------------CEEEEEecCCCCeEEEEE-C-CCCEEeE
Confidence 999984 44444444221 1223478888888 56666653 57899999 4 4455555
Q ss_pred -EccccccEeEEEEecCC-CEEEEEEcCCeEEEEECCCCceEEEEe-----cC-Cce-EEEEEecCCCeeee--------
Q psy307 432 -YYGHRQAVRDICFNNTG-TNFISAGYDRYLKLWDTESGECISRFT-----SR-KVA-YCVKFHPDEDKQHL-------- 494 (1019)
Q Consensus 432 -l~~H~~~V~sl~fspdg-~~l~S~s~Dg~I~lWDl~t~~~i~~~~-----~~-~~v-~~v~~~p~~~~~~~-------- 494 (1019)
+... + ++.+.|++ +.+++.+.||.+.++|. +++...... .. ..+ ....+.+++....+
T Consensus 163 ~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~ 237 (373)
T 2mad_H 163 LLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKIL 237 (373)
T ss_pred EcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEE
Confidence 4321 2 23455665 45677888999999999 887764332 11 110 11233333322211
Q ss_pred --ccCCCc-e---eeeC---------CCCCcccEEEEcCCCCEEEEEec----------CCeEEEEEccCcccccceeEE
Q psy307 495 --DIPVDM-K---YIAD---------PTMHSMPAVTSSPNNKWLACQSM----------DNKILIFSALNRFKLNRKKTF 549 (1019)
Q Consensus 495 --~~~~~~-~---~i~~---------~~~~~i~~v~~spdg~~Lasgs~----------Dg~I~iwd~~~~~~~~~~~~l 549 (1019)
+..... . .+.. ........+.++|+++.+.+... ++.|.++|+.+... +..+
T Consensus 238 vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v---v~~i 314 (373)
T 2mad_H 238 QADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT---SSQI 314 (373)
T ss_pred EEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE---EEEE
Confidence 111100 0 0000 00111223788999988877653 35899999987633 3444
Q ss_pred eccccccceEEEEEcCCCC-EEEEEe-CCCeEEEEeCCCCceeeee
Q psy307 550 EGHMVAGYACSLDFSPDMS-YLISGD-ADGKCYIWDWKTTKLFKKW 593 (1019)
Q Consensus 550 ~gh~~~~~V~~v~fspdg~-~Lasgs-~DG~I~IWDl~t~~~l~~l 593 (1019)
... ....+++|+|||+ +++++. .++.|.+||..+++.+.++
T Consensus 315 ~~g---~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 315 SLG---HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ECC---CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 322 3467899999999 777777 5899999999999998884
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.07 E-value=8.7e-08 Score=108.45 Aligned_cols=279 Identities=10% Similarity=-0.029 Sum_probs=168.4
Q ss_pred CCCCCCCeeeeCCC-----CCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEee----------CC
Q psy307 293 PTDYQGRSFLHPPH-----DVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCS----------MD 357 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~-----D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs----------~D 357 (1019)
...++|+.+..... ++.|.+.+.. ..+.+.++..-..+ . ++++|+ ++.+++++ .+
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~-------t~~v~~~I~vG~~P-~-va~spD-G~~lyVan~~~~r~~~G~~~ 108 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGE-------AGRVIGMIDGGFLP-N-PVVADD-GSFIAHASTVFSRIARGERT 108 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETT-------TTEEEEEEEECSSC-E-EEECTT-SSCEEEEEEEEEETTEEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECC-------CCeEEEEEECCCCC-c-EEECCC-CCEEEEEcccccccccCCCC
Confidence 34577776655543 4567776654 23556666654445 4 999997 55555543 46
Q ss_pred CeEEEEecCCCcEEEEEeccc-------CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC--CCcEEEEEccCCCeE
Q psy307 358 CRVKLWEVYKERRCVRTYYGH-------RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM--DCRVKLWEVYKEHRC 428 (1019)
Q Consensus 358 g~I~IWdl~~~~~~~~~~~gh-------~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~--Dg~I~IWDl~~~~~~ 428 (1019)
+.|.+||.. +.+.+.++.-. ...-..+.|+||| ++++++.. ++.|.++|+ ...+.
T Consensus 109 ~~VsviD~~-t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG--------------k~lyVan~~~~~~VsVID~-~t~~v 172 (386)
T 3sjl_D 109 DYVEVFDPV-TLLPTADIELPDAPRFLVGTYPWMTSLTPDG--------------KTLLFYQFSPAPAVGVVDL-EGKAF 172 (386)
T ss_dssp EEEEEECTT-TCCEEEEEEETTCCCCCBSCCGGGEEECTTS--------------SEEEEEECSSSCEEEEEET-TTTEE
T ss_pred CEEEEEECC-CCeEEEEEECCCccccccCCCCceEEEcCCC--------------CEEEEEEcCCCCeEEEEEC-CCCcE
Confidence 889999994 45556555321 1235578899998 46666553 689999999 56666
Q ss_pred EEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCC-CceEEEEecC-----CceE-EEEEe-cCCCeeeeccCCCc
Q psy307 429 VRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTES-GECISRFTSR-----KVAY-CVKFH-PDEDKQHLDIPVDM 500 (1019)
Q Consensus 429 ~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t-~~~i~~~~~~-----~~v~-~v~~~-p~~~~~~~~~~~~~ 500 (1019)
+..+.... . ...+....+.+++.+.||++.+.++.+ ++........ ..+. ...|. +++...+... ...
T Consensus 173 v~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~-~g~ 248 (386)
T 3sjl_D 173 KRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-TGK 248 (386)
T ss_dssp EEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT-TSE
T ss_pred EEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC-CCE
Confidence 66664321 1 123433456788889999999999976 6653322111 1110 12332 3332211111 111
Q ss_pred eeeeCC-----------------------CCCcccEEEEcCCCCEEEEEec----------CCeEEEEEccCccccccee
Q psy307 501 KYIADP-----------------------TMHSMPAVTSSPNNKWLACQSM----------DNKILIFSALNRFKLNRKK 547 (1019)
Q Consensus 501 ~~i~~~-----------------------~~~~i~~v~~spdg~~Lasgs~----------Dg~I~iwd~~~~~~~~~~~ 547 (1019)
.++.+. .......++++++++.++.... .+.|.++|+.+...+ .
T Consensus 249 V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~---~ 325 (386)
T 3sjl_D 249 IHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL---A 325 (386)
T ss_dssp EEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE---E
T ss_pred EEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE---E
Confidence 111111 0123345888999988887653 257999999987544 3
Q ss_pred EEeccccccceEEEEEcCCCC-EEEEE-eCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCC
Q psy307 548 TFEGHMVAGYACSLDFSPDMS-YLISG-DADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPH 608 (1019)
Q Consensus 548 ~l~gh~~~~~V~~v~fspdg~-~Lasg-s~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~ 608 (1019)
.+.-. ..+.++++++|++ +|+++ ..++.|.++|..+++.+.++..-. .-+.+.+++|
T Consensus 326 ~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~-~p~~l~~s~d 384 (386)
T 3sjl_D 326 KFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG-HGPQVITTAD 384 (386)
T ss_dssp EEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC-SSCCEEEECC
T ss_pred EEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCC-CCceeEECCc
Confidence 33221 2367899999997 66665 458999999999999999987432 2245555554
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.6e-09 Score=129.25 Aligned_cols=244 Identities=12% Similarity=0.032 Sum_probs=152.2
Q ss_pred CCCCCCCCeee-----eCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCe-------
Q psy307 292 DPTDYQGRSFL-----HPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCR------- 359 (1019)
Q Consensus 292 ~~~~~~gr~~~-----~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~------- 359 (1019)
..++++|+.++ .++.+..|.+|+...... +. ...+.+. ....++|+|| ++.|+.++.|..
T Consensus 126 ~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~--~~---~~~~~~~--~~~~~~wspD-g~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 126 WAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEW--SK---VDVIEGG--KYATPKWTPD-SKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp EEECTTSSEEEEEEEETTCSCCEEEEEETTTCCB--CS---SCCBSCC--TTCCCEECTT-SSEEEEEECCCCTTSCGGG
T ss_pred EEECCCCCEEEEEECCCCCceEEEEEEECCCCCC--cC---CcccCcc--cccceEEecC-CCEEEEEEecCCCCCcccc
Confidence 45789999998 666678999998875432 10 0012211 1267999997 677777777765
Q ss_pred ------EEEEecCCCc---EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC----cEEEEEccCCC
Q psy307 360 ------VKLWEVYKER---RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC----RVKLWEVYKEH 426 (1019)
Q Consensus 360 ------I~IWdl~~~~---~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg----~I~IWDl~~~~ 426 (1019)
|++|++.+.. .++....+|...+..+.|+|||. +|+.++.++ .|.+|+.. ++
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~--------------~l~~~~~~~~~~~~l~~~~~~-~~ 262 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK--------------YLFVYILRGWSENDVYWKRPG-EK 262 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC--------------CEEEEEEETTTEEEEEEECTT-CS
T ss_pred CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC--------------EEEEEEeCCCCceEEEEEcCC-CC
Confidence 9999996443 34444455667788899999984 455444444 56666542 22
Q ss_pred eEEEEEccccccEeEEEEecCCCEEEEEEc----CCeEEEEECCCCce---EEEEecCCceEEEEEecCCCeeeeccCCC
Q psy307 427 RCVRTYYGHRQAVRDICFNNTGTNFISAGY----DRYLKLWDTESGEC---ISRFTSRKVAYCVKFHPDEDKQHLDIPVD 499 (1019)
Q Consensus 427 ~~~~~l~~H~~~V~sl~fspdg~~l~S~s~----Dg~I~lWDl~t~~~---i~~~~~~~~v~~v~~~p~~~~~~~~~~~~ 499 (1019)
....+..+...+....+ ++|. |+..+. ++.|.+||+.++.. ...+...
T Consensus 263 -~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---------------------- 317 (695)
T 2bkl_A 263 -DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED---------------------- 317 (695)
T ss_dssp -SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC----------------------
T ss_pred -ceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC----------------------
Confidence 34445555556666666 5666 555443 57899999977642 2111111
Q ss_pred ceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEcc-CcccccceeEEeccccccceEEEEEcCCCCEEEEE----e
Q psy307 500 MKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSAL-NRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISG----D 574 (1019)
Q Consensus 500 ~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~-~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasg----s 574 (1019)
....+..++++ ++.++++...|+..++|.+. ++. ....+..+. .+.+..++++|+++.++.. .
T Consensus 318 -------~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~---~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~ 385 (695)
T 2bkl_A 318 -------SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGK---PVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFT 385 (695)
T ss_dssp -------SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC---EEEECCCSS-SSEECCCBSCTTCSEEEEEEEETT
T ss_pred -------CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC---eeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCC
Confidence 01234456666 67788888999988888665 221 223333331 2557778899999877633 3
Q ss_pred CCCeEEEEeCCCCceeeeeecc
Q psy307 575 ADGKCYIWDWKTTKLFKKWKAH 596 (1019)
Q Consensus 575 ~DG~I~IWDl~t~~~l~~l~~h 596 (1019)
..++|++||+.+++. ..++.+
T Consensus 386 ~P~~v~~~d~~~g~~-~~l~~~ 406 (695)
T 2bkl_A 386 TPRQIYKTSVSTGKS-ELWAKV 406 (695)
T ss_dssp EEEEEEEEETTTCCE-EEEEEC
T ss_pred CCCEEEEEECCCCcE-EEEecC
Confidence 357899999998873 344433
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.9e-08 Score=111.13 Aligned_cols=258 Identities=8% Similarity=-0.068 Sum_probs=167.9
Q ss_pred CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe----------CCCcEEEEEccCCCe
Q psy307 358 CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS----------MDCRVKLWEVYKEHR 427 (1019)
Q Consensus 358 g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs----------~Dg~I~IWDl~~~~~ 427 (1019)
+.|.+.|. ...+.+.++..-..+ .+.++|||. .|+++. .++.|.++|.. +.+
T Consensus 99 ~~VsVID~-~t~~vv~~I~vG~~P--gia~SpDgk--------------~lyVan~~~~~~~~G~~~~~VsviD~~-t~~ 160 (426)
T 3c75_H 99 TQQFVIDG-STGRILGMTDGGFLP--HPVAAEDGS--------------FFAQASTVFERIARGKRTDYVEVFDPV-TFL 160 (426)
T ss_dssp EEEEEEET-TTTEEEEEEEECSSC--EEEECTTSS--------------CEEEEEEEEEETTEEEEEEEEEEECTT-TCC
T ss_pred CeEEEEEC-CCCEEEEEEECCCCC--ceEECCCCC--------------EEEEEeccccccccCCCCCEEEEEECC-CCc
Confidence 79999999 556677777654555 899999995 333333 47799999994 445
Q ss_pred EEEEEccc-------cccEeEEEEecCCCEEEEEEc--CCeEEEEECCCCceEEEEecCCc--------eEEEEEecCCC
Q psy307 428 CVRTYYGH-------RQAVRDICFNNTGTNFISAGY--DRYLKLWDTESGECISRFTSRKV--------AYCVKFHPDED 490 (1019)
Q Consensus 428 ~~~~l~~H-------~~~V~sl~fspdg~~l~S~s~--Dg~I~lWDl~t~~~i~~~~~~~~--------v~~v~~~p~~~ 490 (1019)
.+..+.-. ......+.|+|||++++.+.. ++.|.+.|+.+++.+.++..... ...+.+++++.
T Consensus 161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~ 240 (426)
T 3c75_H 161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGS 240 (426)
T ss_dssp EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSS
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCC
Confidence 55544311 123456799999999998875 57899999999999988876432 12366778887
Q ss_pred eeeeccCCCcee-----eeCCCCCc-ccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEec---cc-----ccc
Q psy307 491 KQHLDIPVDMKY-----IADPTMHS-MPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEG---HM-----VAG 556 (1019)
Q Consensus 491 ~~~~~~~~~~~~-----i~~~~~~~-i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~g---h~-----~~~ 556 (1019)
...++....... ........ ...+.+.+++..++..+..+.|.+.|...... .....+.- .. ...
T Consensus 241 ~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~-~v~~~~~~~~~~~i~~g~~p~ 319 (426)
T 3c75_H 241 LARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA-TFRAPIEALTEAERADDWRPG 319 (426)
T ss_dssp EEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE-EECCCEESSCTTTGGGTEEEC
T ss_pred EEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce-EEeeeeeeccccccccccccC
Confidence 766655221111 11111111 12456789988888888889999999865321 11111110 00 001
Q ss_pred ceEEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEe-CCCcEEEE
Q psy307 557 YACSLDFSPDMSYLISGDA----------DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAG-WDAATAKV 625 (1019)
Q Consensus 557 ~V~~v~fspdg~~Lasgs~----------DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s-~Dg~I~iw 625 (1019)
....++++|||+.++.... ++.|.++|..+.+.+.++.... ...++.|+|++..+++++. .++.|.+
T Consensus 320 g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsV- 397 (426)
T 3c75_H 320 GWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHI- 397 (426)
T ss_dssp SSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEE-
T ss_pred CceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEE-
Confidence 1113689999987766542 3579999999999999987533 4789999999853666666 5788855
Q ss_pred eccceeeeeee
Q psy307 626 QDANIVKIAVE 636 (1019)
Q Consensus 626 wd~~i~ki~~e 636 (1019)
.|....++...
T Consensus 398 ID~~t~kvv~t 408 (426)
T 3c75_H 398 YDAATGEELRS 408 (426)
T ss_dssp EETTTCCEEEE
T ss_pred EECCCCCEEEE
Confidence 45555555433
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.01 E-value=6.4e-09 Score=118.19 Aligned_cols=173 Identities=14% Similarity=0.078 Sum_probs=124.6
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc----------EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCc
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER----------RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAH 406 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~----------~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~ 406 (1019)
.++.+++++. ..++++|+.++ +++|++..-. .... ...+.+ |+.++| ++ .
T Consensus 39 ~~nlLais~~-~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d~--------------~ 98 (388)
T 1xip_A 39 SLQNLDISNS-KSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--HG--------------D 98 (388)
T ss_dssp CCBCEEEETT-TTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--ET--------------T
T ss_pred cccEEEEcCC-CCEEEEeCCCE-EEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--CC--------------C
Confidence 6888999996 67888888875 5559863211 1111 223555 888888 65 5
Q ss_pred EEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEe
Q psy307 407 LLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFH 486 (1019)
Q Consensus 407 ~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~ 486 (1019)
+|+++ .++.|++||+.... .......|...|.++.+.+. .+++++.||.|.+||+.++.... +
T Consensus 99 ~L~v~-~~~~l~v~dv~sl~-~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~------------ 161 (388)
T 1xip_A 99 QVLVS-TRNALYSLDLEELS-EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-L------------ 161 (388)
T ss_dssp EEEEE-ESSEEEEEESSSTT-CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-E------------
T ss_pred EEEEE-cCCcEEEEEchhhh-ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-c------------
Confidence 78887 88999999996554 34456677788888877654 39999999999999999877542 1
Q ss_pred cCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEE------e---ccccccc
Q psy307 487 PDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTF------E---GHMVAGY 557 (1019)
Q Consensus 487 p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l------~---gh~~~~~ 557 (1019)
...|.+++|||+| ++.|..||+|++|+...... ....++ . +|. ..
T Consensus 162 ---------------------~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~-~~k~~I~~Pp~~~~~~~~~--~~ 215 (388)
T 1xip_A 162 ---------------------AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEM-EKQFEFSLPSELEELPVEE--YS 215 (388)
T ss_dssp ---------------------EESEEEEEECSSE--EEEEETTSCEEEEEEETTEE-EEEEEECCCHHHHTSCTTT--SE
T ss_pred ---------------------cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccc-cccceecCCcccccccCCC--ee
Confidence 1246678888899 67899999999998876521 102334 2 233 67
Q ss_pred eEEEEEcCCCCEEEE
Q psy307 558 ACSLDFSPDMSYLIS 572 (1019)
Q Consensus 558 V~~v~fspdg~~Las 572 (1019)
|.++.|.+++.++++
T Consensus 216 V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 216 PLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEEEESSSSEEEEE
T ss_pred EEEEEEecCCeEEEE
Confidence 999999999999887
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.8e-08 Score=108.59 Aligned_cols=262 Identities=11% Similarity=0.030 Sum_probs=156.7
Q ss_pred CCeEEEEEcCCCCcEEEEee--CCCeEEEEecCCCcEEEEEec-------ccCccEeEEEEcCCCCceeEEEeecCCCCc
Q psy307 336 KGISAIRWFPKSAHLLLSCS--MDCRVKLWEVYKERRCVRTYY-------GHRQAVRDICFNNTGTNFISAIRWFPKSAH 406 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs--~Dg~I~IWdl~~~~~~~~~~~-------gh~~~V~~i~fspdg~~~vs~i~~~p~~~~ 406 (1019)
..+..|+++|+ ++++++.. .++.++||.+. .++. ..+. +|-..+..++++++| .
T Consensus 17 ~~p~~va~~~~-g~~~v~~~~~~~~~~~l~~~~-~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g--------------~ 79 (343)
T 2qe8_A 17 LAPGNITLTPD-GRLFLSLHQFYQPEMQVAELT-QDGL-IPFPPQSGNAIITFDTVLGIKSDGNG--------------I 79 (343)
T ss_dssp SCEEEEEECTT-SCEEEEECGGGCCSCSEEEEE-TTEE-EESCCCCSSCCCCCSCEEEEEECSSS--------------E
T ss_pred CCcceEEECCC-CCEEEEeCCCCCCceEEEEEC-CCCe-ecCCCcccCcccceeEeeEEEEcCCC--------------c
Confidence 67899999996 77888754 23447777764 4432 2222 344567888888777 4
Q ss_pred EEEEEeC-----CCcEEEEEccCCCeEEEEEcc------ccccEeEEEEecCCCE-EEEEE---cCCeEEEEECCCCceE
Q psy307 407 LLLSCSM-----DCRVKLWEVYKEHRCVRTYYG------HRQAVRDICFNNTGTN-FISAG---YDRYLKLWDTESGECI 471 (1019)
Q Consensus 407 ~L~sgs~-----Dg~I~IWDl~~~~~~~~~l~~------H~~~V~sl~fspdg~~-l~S~s---~Dg~I~lWDl~t~~~i 471 (1019)
++++-.. ++.|.+||+ .+++.+..+.. +...+..+++++++.. +++.+ .++.|.+||+.+++..
T Consensus 80 L~v~D~g~~~~~~~~i~~~d~-~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~ 158 (343)
T 2qe8_A 80 VWMLDNGNQSKSVPKLVAWDT-LNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAA 158 (343)
T ss_dssp EEEEECHHHHTSCCEEEEEET-TTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEE
T ss_pred EEEEcCCCCcCCCCeEEEEEC-CCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEE
Confidence 4444433 578999998 45555555432 2345689999986555 45555 6789999999998876
Q ss_pred EEEecCCce--EEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC-eEEEEEccCcc--c----
Q psy307 472 SRFTSRKVA--YCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN-KILIFSALNRF--K---- 542 (1019)
Q Consensus 472 ~~~~~~~~v--~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg-~I~iwd~~~~~--~---- 542 (1019)
..+..+... ....+.+++.............. -...+..++++|+|+.|+.+..++ .|..++..... .
T Consensus 159 r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~---~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~ 235 (343)
T 2qe8_A 159 RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIR---PHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDA 235 (343)
T ss_dssp EECTTCTTTSCCSCCCEETTEECBEECTTSCEEC---CCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHH
T ss_pred EEecCCCcccccccceeECCEEEEeccCCCceec---eecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChh
Confidence 665432110 00222222221110000000000 012356799999999888887766 55555542100 0
Q ss_pred --ccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec-cCCCEEEEEEcCCCCcEEEEEeCC
Q psy307 543 --LNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA-HDGVCISTLWHPHEPSKVVTAGWD 619 (1019)
Q Consensus 543 --~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~-h~~~V~sl~~sp~~~~~l~s~s~D 619 (1019)
...+ ...++. +....++++++|.++++...++.|.+||..+++....... +-..+.++++.+++ .++++.+..
T Consensus 236 ~~~~~~-~~~g~~--g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g-~l~v~~~~~ 311 (343)
T 2qe8_A 236 ELGSKI-ERYSEK--PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG-YLYFDCNQL 311 (343)
T ss_dssp HHHTTC-EEEEEC--CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS-CEEEEECCG
T ss_pred hhhcce-EecccC--CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC-cEEEEeCcc
Confidence 0001 111222 3455789999999999998999999999866664333322 23468899999886 566666644
Q ss_pred CcE
Q psy307 620 AAT 622 (1019)
Q Consensus 620 g~I 622 (1019)
+.+
T Consensus 312 ~~~ 314 (343)
T 2qe8_A 312 HHS 314 (343)
T ss_dssp GGS
T ss_pred ccc
Confidence 443
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.00 E-value=5.1e-09 Score=119.00 Aligned_cols=172 Identities=13% Similarity=0.080 Sum_probs=120.9
Q ss_pred cEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC----------eEEEEEccccccEeEEEEecCCCE
Q psy307 381 AVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH----------RCVRTYYGHRQAVRDICFNNTGTN 450 (1019)
Q Consensus 381 ~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~----------~~~~~l~~H~~~V~sl~fspdg~~ 450 (1019)
++..+++++.. .++++|+.++ +.+|++..-. ... ....+.. |..++| ++++
T Consensus 39 ~~nlLais~~~--------------gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~~ 99 (388)
T 1xip_A 39 SLQNLDISNSK--------------SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGDQ 99 (388)
T ss_dssp CCBCEEEETTT--------------TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETTE
T ss_pred cccEEEEcCCC--------------CEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCCE
Confidence 57888888877 6888888875 5559874221 111 1223566 999999 8889
Q ss_pred EEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC
Q psy307 451 FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN 530 (1019)
Q Consensus 451 l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg 530 (1019)
|+++ .++.|++||+.+........... ..+..+.+.+. .+++++.||
T Consensus 100 L~v~-~~~~l~v~dv~sl~~~~~~~~~~------------------------------~~v~~i~~~~p--~~av~~~dG 146 (388)
T 1xip_A 100 VLVS-TRNALYSLDLEELSEFRTVTSFE------------------------------KPVFQLKNVNN--TLVILNSVN 146 (388)
T ss_dssp EEEE-ESSEEEEEESSSTTCEEEEEECS------------------------------SCEEEEEECSS--EEEEEETTS
T ss_pred EEEE-cCCcEEEEEchhhhccCccceee------------------------------cceeeEEecCC--CEEEEECCC
Confidence 8888 88999999998765443332211 01122222222 288889999
Q ss_pred eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--eeee------e---ccCCC
Q psy307 531 KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKL--FKKW------K---AHDGV 599 (1019)
Q Consensus 531 ~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~--l~~l------~---~h~~~ 599 (1019)
.|.+||+.++... . +. ..|++++|||+| ++.|..||++++|+...+.. ..++ . +|...
T Consensus 147 ~L~v~dl~~~~~~---~----~~--~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~ 215 (388)
T 1xip_A 147 DLSALDLRTKSTK---Q----LA--QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYS 215 (388)
T ss_dssp EEEEEETTTCCEE---E----EE--ESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSE
T ss_pred CEEEEEccCCccc---c----cc--CCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCee
Confidence 9999999865321 1 11 459999999999 67899999999999887775 5556 2 37788
Q ss_pred EEEEEEcCCCCcEEEEE
Q psy307 600 CISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 600 V~sl~~sp~~~~~l~s~ 616 (1019)
|.++.|.+++ .++++-
T Consensus 216 V~sI~wl~~~-~flv~y 231 (388)
T 1xip_A 216 PLSVTILSPQ-DFLAVF 231 (388)
T ss_dssp EEEEEESSSS-EEEEEE
T ss_pred EEEEEEecCC-eEEEEE
Confidence 9999999987 456553
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.97 E-value=8.2e-07 Score=96.31 Aligned_cols=258 Identities=7% Similarity=-0.034 Sum_probs=165.8
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVR 373 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~ 373 (1019)
.+.+|+.++....++.|..++.. ... . ...+..+...+.++++.++ +.++++...++.|..||.. ......
T Consensus 27 ~d~~g~l~v~~~~~~~v~~~~~~-~~~-----~-~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~v~~~d~~-g~~~~~ 97 (300)
T 2qc5_A 27 SSEDGKVWFTQHKANKISSLDQS-GRI-----K-EFEVPTPDAKVMCLIVSSL-GDIWFTENGANKIGKLSKK-GGFTEY 97 (300)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCE-----E-EEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred ECCCCCEEEEcCCCCeEEEECCC-Cce-----E-EEECCCCCCcceeEEECCC-CCEEEEecCCCeEEEECCC-CCeEEe
Confidence 46678988888777888888654 111 0 1122344567999999985 6777777678999999985 332222
Q ss_pred EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE
Q psy307 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS 453 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S 453 (1019)
........+.++++.++| .++++...++.|..||.. .......+......+.++++.++|+.+++
T Consensus 98 ~~~~~~~~~~~i~~~~~g--------------~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~ 162 (300)
T 2qc5_A 98 PLPQPDSGPYGITEGLNG--------------DIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFT 162 (300)
T ss_dssp ECSSTTCCEEEEEECSTT--------------CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred cCCCCCCCCccceECCCC--------------CEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEE
Confidence 223334567888888777 566666668899999984 32222233334567899999999996666
Q ss_pred EEcCCeEEEEECCCCceEEEEec---CCceEEEEEecCCCeeeeccCCC----------ceee-eCCCCCcccEEEEcCC
Q psy307 454 AGYDRYLKLWDTESGECISRFTS---RKVAYCVKFHPDEDKQHLDIPVD----------MKYI-ADPTMHSMPAVTSSPN 519 (1019)
Q Consensus 454 ~s~Dg~I~lWDl~t~~~i~~~~~---~~~v~~v~~~p~~~~~~~~~~~~----------~~~i-~~~~~~~i~~v~~spd 519 (1019)
...++.|..+|. +++... +.. ...+..+.+.+++...+...... .... .......+.+++++++
T Consensus 163 ~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~ 240 (300)
T 2qc5_A 163 ENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKN 240 (300)
T ss_dssp ETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECST
T ss_pred ecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCC
Confidence 666789999998 565543 322 24578888988775443322111 1111 1112344678999999
Q ss_pred CCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy307 520 NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDW 584 (1019)
Q Consensus 520 g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl 584 (1019)
|+++++...++.|..|+.... . ..+........+.+++++++|.+.++.. . .|..+|.
T Consensus 241 g~l~v~~~~~~~i~~~~~~g~--~---~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 241 SEIWFTEWGANQIGRITNDNT--I---QEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TCEEEEETTTTEEEEECTTSC--E---EEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCEEEeccCCCeEEEECCCCc--E---EEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 987777667799999998422 1 1222111124477899999998666655 4 6777765
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-07 Score=103.53 Aligned_cols=235 Identities=11% Similarity=0.097 Sum_probs=147.5
Q ss_pred CCCCCCeeee-------CCCCCceeeecCCCCCCccCCccceeee-----ccCCCCeEEEEEcCCCCcEEEEeeCCCeEE
Q psy307 294 TDYQGRSFLH-------PPHDVGTNLRSDTPPDRCFLPKTQVHTW-----EGHTKGISAIRWFPKSAHLLLSCSMDCRVK 361 (1019)
Q Consensus 294 ~~~~gr~~~~-------~~~D~~v~lw~~~~~~~~~lp~~~i~~l-----~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~ 361 (1019)
++.+|+.+++ ...++.|..|+..... +..+ .++...+.+++++++++.++++.. .+.|.
T Consensus 25 ~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~--------~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~ 95 (314)
T 1pjx_A 25 FDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK--------KTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL 95 (314)
T ss_dssp ECTTSCEEEEETTCEETTEECCEEEEECTTTCC--------EEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred ECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc--------EEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence 5678888888 6677888888743221 1122 235678999999996355555444 45788
Q ss_pred EEecCCCcEEEEE-ecc----cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC---------------CcEEEEE
Q psy307 362 LWEVYKERRCVRT-YYG----HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD---------------CRVKLWE 421 (1019)
Q Consensus 362 IWdl~~~~~~~~~-~~g----h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D---------------g~I~IWD 421 (1019)
+||.. ++.... ... ....+.+++++++| .++++...+ +.|..||
T Consensus 96 ~~d~~--g~~~~~~~~~~~~~~~~~~~~i~~d~~g--------------~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (314)
T 1pjx_A 96 VVQTD--GTFEEIAKKDSEGRRMQGCNDCAFDYEG--------------NLWITAPAGEVAPADYTRSMQEKFGSIYCFT 159 (314)
T ss_dssp EEETT--SCEEECCSBCTTSCBCBCCCEEEECTTS--------------CEEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred EEeCC--CCEEEEEeccCCCccccCCcCEEECCCC--------------CEEEEecCcccccccccccccCCCCeEEEEC
Confidence 99985 333322 211 12347788888887 455555544 4566666
Q ss_pred ccCCCeEEEEEccccccEeEEEEe----cCCCEEEEE-EcCCeEEEEECC-CCceEEEEecCCceEEEEEecCCCeeeec
Q psy307 422 VYKEHRCVRTYYGHRQAVRDICFN----NTGTNFISA-GYDRYLKLWDTE-SGECISRFTSRKVAYCVKFHPDEDKQHLD 495 (1019)
Q Consensus 422 l~~~~~~~~~l~~H~~~V~sl~fs----pdg~~l~S~-s~Dg~I~lWDl~-t~~~i~~~~~~~~v~~v~~~p~~~~~~~~ 495 (1019)
.. +.... +..+......++|+ ++++.++.+ +.++.|.+||+. ++..... . .+.-.+
T Consensus 160 ~~--g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~-~------~~~~~~-------- 221 (314)
T 1pjx_A 160 TD--GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK-K------VWGHIP-------- 221 (314)
T ss_dssp TT--SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE-E------EEEECC--------
T ss_pred CC--CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc-e------EEEECC--------
Confidence 53 43332 23344556889999 999765555 467899999975 3332110 0 000000
Q ss_pred cCCCceeeeCCCC-CcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEE-EE
Q psy307 496 IPVDMKYIADPTM-HSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLI-SG 573 (1019)
Q Consensus 496 ~~~~~~~i~~~~~-~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~La-sg 573 (1019)
... .....++++++|+++++...++.|.+||..++.. ...+..+. ..+.+++|+|+|++|+ +.
T Consensus 222 ----------~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~---~~~~~~~~--~~~~~i~~~~dg~~l~v~~ 286 (314)
T 1pjx_A 222 ----------GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP---KMRIRCPF--EKPSNLHFKPQTKTIFVTE 286 (314)
T ss_dssp ----------CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC---SEEEECSS--SCEEEEEECTTSSEEEEEE
T ss_pred ----------CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE---eEEEeCCC--CCceeEEECCCCCEEEEEe
Confidence 011 2345688899999888888899999999875432 23344333 5688999999999554 45
Q ss_pred eCCCeEEEEeCCC
Q psy307 574 DADGKCYIWDWKT 586 (1019)
Q Consensus 574 s~DG~I~IWDl~t 586 (1019)
..++.|..|++..
T Consensus 287 ~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 287 HENNAVWKFEWQR 299 (314)
T ss_dssp TTTTEEEEEECSS
T ss_pred CCCCeEEEEeCCC
Confidence 5668899999865
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-07 Score=117.12 Aligned_cols=240 Identities=10% Similarity=0.025 Sum_probs=142.4
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEe----eCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 332 EGHTKGISAIRWFPKSAHLLLSC----SMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 332 ~gH~~~V~~i~fspd~g~lLaSg----s~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
.+|...+..++||||+..++++. +.+..|++||+.++......+.+. ....++|+ ||+ .
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~--------------~ 187 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNE--------------G 187 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTT--------------E
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCC--------------E
Confidence 35667899999999744444443 333579999995544222222211 12466788 774 4
Q ss_pred EEEEeCC-------------CcEEEEEccCCC---eEEEEEcc-ccccEeEEEEecCCCEEEEEEc----CCeEEEEECC
Q psy307 408 LLSCSMD-------------CRVKLWEVYKEH---RCVRTYYG-HRQAVRDICFNNTGTNFISAGY----DRYLKLWDTE 466 (1019)
Q Consensus 408 L~sgs~D-------------g~I~IWDl~~~~---~~~~~l~~-H~~~V~sl~fspdg~~l~S~s~----Dg~I~lWDl~ 466 (1019)
|+.++.+ ..|++|++.+.. .++..... |...+.++.|+|||++|+..+. +..|.+||+.
T Consensus 188 l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~ 267 (693)
T 3iuj_A 188 FFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLS 267 (693)
T ss_dssp EEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETT
T ss_pred EEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECC
Confidence 5555444 349999985543 23433444 5666788999999998754443 2479999987
Q ss_pred CCc-eEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec----CCeEEEEEccCcc
Q psy307 467 SGE-CISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM----DNKILIFSALNRF 541 (1019)
Q Consensus 467 t~~-~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~----Dg~I~iwd~~~~~ 541 (1019)
++. ....+..+. ...... ++++|..|+..+. .+.|..+++.++.
T Consensus 268 ~~~~~~~~l~~~~------------------------------~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~ 316 (693)
T 3iuj_A 268 QENAPLLTVQGDL------------------------------DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG 316 (693)
T ss_dssp STTCCCEEEECSS------------------------------SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred CCCCceEEEeCCC------------------------------CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 763 222222111 111111 4455555554443 3589999988653
Q ss_pred cccceeEEeccccccceEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeeeee-ccCCCEEEEEEcCCCCcEEEEEe
Q psy307 542 KLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA-DG--KCYIWDWKTTKLFKKWK-AHDGVCISTLWHPHEPSKVVTAG 617 (1019)
Q Consensus 542 ~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~-DG--~I~IWDl~t~~~l~~l~-~h~~~V~sl~~sp~~~~~l~s~s 617 (1019)
. .....+..+.. .+. .|++++++|+.... +| .|++||+..+ ....+. .+.+.+..+.+++++..++++.+
T Consensus 317 ~-~~~~~l~~~~~--~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~s 390 (693)
T 3iuj_A 317 P-AHWRDLIPERQ--QVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFE 390 (693)
T ss_dssp G-GGCEEEECCCS--SCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEE
T ss_pred c-cccEEEecCCC--CEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEec
Confidence 2 12234555542 233 88999998876655 43 6899998754 344443 24456778888888865555554
Q ss_pred CC---CcEEEE
Q psy307 618 WD---AATAKV 625 (1019)
Q Consensus 618 ~D---g~I~iw 625 (1019)
.. +++..+
T Consensus 391 s~~tP~~l~~~ 401 (693)
T 3iuj_A 391 NYAQPPTLYRF 401 (693)
T ss_dssp CSSSCCEEEEE
T ss_pred CCCCCCEEEEE
Confidence 32 555443
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-07 Score=118.11 Aligned_cols=197 Identities=10% Similarity=0.005 Sum_probs=121.9
Q ss_pred cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEE-eCCC----cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEE
Q psy307 378 HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSC-SMDC----RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 378 h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sg-s~Dg----~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
|...+..++|||||. +|+.+ +.+| .|++||+..+ ..+.. ..+...+..++|+|| +.|+
T Consensus 161 ~~~~~~~~~~SPDG~--------------~la~~~~~~G~e~~~i~v~dl~tg-~~~~~-~~~~~~~~~~~wspD-~~l~ 223 (741)
T 1yr2_A 161 GATALDAWAASDDGR--------------LLAYSVQDGGSDWRTVKFVGVADG-KPLAD-ELKWVKFSGLAWLGN-DALL 223 (741)
T ss_dssp --EEEEEEEECTTSS--------------EEEEEEEETTCSEEEEEEEETTTC-CEEEE-EEEEEESCCCEESTT-SEEE
T ss_pred CCEEEEeEEECCCCC--------------EEEEEEcCCCCceEEEEEEECCCC-CCCCc-cCCCceeccEEEECC-CEEE
Confidence 334677788888884 44443 3333 5999999544 43332 112222357799999 9999
Q ss_pred EEEcCCe--------------EEEEECCCCce--EEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEE
Q psy307 453 SAGYDRY--------------LKLWDTESGEC--ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTS 516 (1019)
Q Consensus 453 S~s~Dg~--------------I~lWDl~t~~~--i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~ 516 (1019)
.++.|+. |.+|++.++.. ...+.. ..+...+..+.|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~----------------------------~~~~~~~~~~~~ 275 (741)
T 1yr2_A 224 YSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT----------------------------PELPKRGHGASV 275 (741)
T ss_dssp EEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC----------------------------TTCTTCEEEEEE
T ss_pred EEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc----------------------------CCCCeEEEEEEE
Confidence 8887664 77888766542 111110 001123567889
Q ss_pred cCCCCEEEEEecCC-----eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC----CCeEEEEeCCCC
Q psy307 517 SPNNKWLACQSMDN-----KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA----DGKCYIWDWKTT 587 (1019)
Q Consensus 517 spdg~~Lasgs~Dg-----~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~----DG~I~IWDl~t~ 587 (1019)
+|||++|+..+.++ .|.+||+.++.. .....+..+. ..+... ++|+|+.|+..+. ++.|.+||+.++
T Consensus 276 SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~--~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 276 SSDGRWVVITSSEGTDPVNTVHVARVTNGKI-GPVTALIPDL--KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp CTTSCEEEEEEECTTCSCCEEEEEEEETTEE-CCCEEEECSS--SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred CCCCCEEEEEEEccCCCcceEEEEECCCCCC-cccEEecCCC--CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 99999998887554 899999876511 1023444443 223333 3589998887765 346999999885
Q ss_pred --ceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 588 --KLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 588 --~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.....+..+...+.++.|+ ++.++++...||...+|
T Consensus 352 ~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~ 389 (741)
T 1yr2_A 352 TPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVL 389 (741)
T ss_dssp SCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEE
T ss_pred ccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEE
Confidence 3333444555567778887 33688899999887665
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.6e-07 Score=103.57 Aligned_cols=250 Identities=10% Similarity=-0.034 Sum_probs=152.7
Q ss_pred CceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEee----------CCCeEEEEecCCCcEEEEEecc
Q psy307 308 VGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCS----------MDCRVKLWEVYKERRCVRTYYG 377 (1019)
Q Consensus 308 ~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs----------~Dg~I~IWdl~~~~~~~~~~~g 377 (1019)
+.|.+.+.. ..+.+.++.--..+ .++++|| ++.|+++. .++.|.++|.. ..+.+..+.-
T Consensus 99 ~~VsVID~~-------t~~vv~~I~vG~~P--gia~SpD-gk~lyVan~~~~~~~~G~~~~~VsviD~~-t~~vv~~I~v 167 (426)
T 3c75_H 99 TQQFVIDGS-------TGRILGMTDGGFLP--HPVAAED-GSFFAQASTVFERIARGKRTDYVEVFDPV-TFLPIADIEL 167 (426)
T ss_dssp EEEEEEETT-------TTEEEEEEEECSSC--EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECTT-TCCEEEEEEE
T ss_pred CeEEEEECC-------CCEEEEEEECCCCC--ceEECCC-CCEEEEEeccccccccCCCCCEEEEEECC-CCcEEEEEEC
Confidence 577777654 23456666544445 8999997 55555544 47899999994 4455555431
Q ss_pred c-------CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC--CCcEEEEEccCCCeEEEEEccccccEeEEEEecCC
Q psy307 378 H-------RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM--DCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTG 448 (1019)
Q Consensus 378 h-------~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~--Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg 448 (1019)
. ......+.|+||| ++|+.+.. ++.|.+.|+ ...+.+..+.--.. ....|++
T Consensus 168 ~g~~r~~~g~~P~~~~~spDG--------------k~lyV~n~~~~~~VsVID~-~t~kvv~~I~v~g~----~~~~p~g 228 (426)
T 3c75_H 168 PDAPRFLVGTYQWMNALTPDN--------------KNLLFYQFSPAPAVGVVDL-EGKTFDRMLDVPDC----YHIFPAS 228 (426)
T ss_dssp TTCCCCCBSCCGGGSEECTTS--------------SEEEEEECSSSCEEEEEET-TTTEEEEEEECCSE----EEEEEEE
T ss_pred CCccccccCCCcceEEEcCCC--------------CEEEEEecCCCCeEEEEEC-CCCeEEEEEEcCCc----eeeccCC
Confidence 1 1234578888888 56666653 688999999 55566655543211 2334443
Q ss_pred -CEEEEEEcCCeEEEEECCCCceEEEE----ecCCce--EEEEEecCCCeeeeccCCCceeeeCC---------------
Q psy307 449 -TNFISAGYDRYLKLWDTESGECISRF----TSRKVA--YCVKFHPDEDKQHLDIPVDMKYIADP--------------- 506 (1019)
Q Consensus 449 -~~l~S~s~Dg~I~lWDl~t~~~i~~~----~~~~~v--~~v~~~p~~~~~~~~~~~~~~~i~~~--------------- 506 (1019)
+.+++.+.||++.+.+..+++..... .....+ ..+.+.+++....+.......++.+.
T Consensus 229 ~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~ 308 (426)
T 3c75_H 229 PTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALT 308 (426)
T ss_dssp TTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSC
T ss_pred CcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecc
Confidence 55677788888888888666655321 111111 12234444443322111111111100
Q ss_pred --------CCCcccEEEEcCCCCEEEEEec----------CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCC
Q psy307 507 --------TMHSMPAVTSSPNNKWLACQSM----------DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMS 568 (1019)
Q Consensus 507 --------~~~~i~~v~~spdg~~Lasgs~----------Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~ 568 (1019)
.......++++|+++.+++... ++.|.++|+.+...+ ..+... ....++.|+|||+
T Consensus 309 ~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv---~~I~vg---~~P~gia~spDg~ 382 (426)
T 3c75_H 309 EAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERI---NKIELG---HEIDSINVSQDAE 382 (426)
T ss_dssp TTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE---EEEEEE---EEECEEEECCSSS
T ss_pred ccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEE---EEEECC---CCcCeEEEccCCC
Confidence 0111223789999887776642 358999999887544 333321 2367899999999
Q ss_pred -EEEEEe-CCCeEEEEeCCCCceeeee
Q psy307 569 -YLISGD-ADGKCYIWDWKTTKLFKKW 593 (1019)
Q Consensus 569 -~Lasgs-~DG~I~IWDl~t~~~l~~l 593 (1019)
++++.. .++.|.|+|..+++.+.++
T Consensus 383 ~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 383 PLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 888887 5899999999999999987
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=4.8e-07 Score=102.32 Aligned_cols=251 Identities=8% Similarity=-0.140 Sum_probs=155.5
Q ss_pred eEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe----------CCCcEEEEEccCCCeE
Q psy307 359 RVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS----------MDCRVKLWEVYKEHRC 428 (1019)
Q Consensus 359 ~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs----------~Dg~I~IWDl~~~~~~ 428 (1019)
+|.+.|. ...+.+.++..-..+ .+.++||+. .++++. .++.|.+||+ .+.+.
T Consensus 47 ~vsvID~-~t~~v~~~i~vG~~P--~i~~spDg~--------------~lyVan~~~~r~~~G~~~~~VsviD~-~T~~v 108 (368)
T 1mda_H 47 ENWVSCA-GCGVTLGHSLGAFLS--LAVAGHSGS--------------DFALASTSFARSAKGKRTDYVEVFDP-VTFLP 108 (368)
T ss_dssp EEEEEET-TTTEEEEEEEECTTC--EEEECTTSS--------------CEEEEEEEETTTTSSSEEEEEEEECT-TTCCE
T ss_pred eEEEEEC-CCCeEEEEEeCCCCC--ceEECCCCC--------------EEEEEcccccccccCCCCCEEEEEEC-CCCCE
Confidence 8889998 556777777655555 799999994 444443 4789999999 55566
Q ss_pred EEEEccc-------cccEeEEEEecCCCEEEEEEc--CCeEEE--EECCCCceEEEEecCCc--------eEEEEEecCC
Q psy307 429 VRTYYGH-------RQAVRDICFNNTGTNFISAGY--DRYLKL--WDTESGECISRFTSRKV--------AYCVKFHPDE 489 (1019)
Q Consensus 429 ~~~l~~H-------~~~V~sl~fspdg~~l~S~s~--Dg~I~l--WDl~t~~~i~~~~~~~~--------v~~v~~~p~~ 489 (1019)
+..+..+ ......++++|||++++.+.. +..|.+ +|+.+ +..+..... -.-+.+++++
T Consensus 109 v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg 185 (368)
T 1mda_H 109 IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPA 185 (368)
T ss_dssp EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTT
T ss_pred EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCC
Confidence 6666432 123557799999999998875 467888 99977 444433211 0123455565
Q ss_pred CeeeeccCC----CceeeeC----CCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEec-------cc-
Q psy307 490 DKQHLDIPV----DMKYIAD----PTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEG-------HM- 553 (1019)
Q Consensus 490 ~~~~~~~~~----~~~~i~~----~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~g-------h~- 553 (1019)
....++... ..+.... .....-+. . ++++..++..+. +.|.+.|+.+... .....+.- +.
T Consensus 186 ~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~-~-~~~~~~~~~vs~-~~V~viD~~~~~~-~v~~~~~~~~~~~~~~~~ 261 (368)
T 1mda_H 186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA-Q-ANYPGMLVWAVA-SSILQGDIPAAGA-TMKAAIDGNESGRKADNF 261 (368)
T ss_dssp SCEEEECCSSCCCCEECCCCSCTTSCBCSCCE-E-ETTTTEEEECBS-SCCEEEECCSSCC-EEECCCCSSCTHHHHTTE
T ss_pred CEEEEECccccccCCeEEEEeeeeeeCCCCcc-c-cccCCEEEEEcC-CEEEEEECCCCcc-eEEEEEEecccccccccc
Confidence 555554443 2222110 00111122 3 666666666666 9999999864311 01111100 00
Q ss_pred cccceEEEEEcCCCCEEEEEeC---------CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEe-CCCcEE
Q psy307 554 VAGYACSLDFSPDMSYLISGDA---------DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAG-WDAATA 623 (1019)
Q Consensus 554 ~~~~V~~v~fspdg~~Lasgs~---------DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s-~Dg~I~ 623 (1019)
.......++++|||+.++.+.. ++.+.++|+.+.+.+..+.... ...+++|+|++..+++++. .++.|.
T Consensus 262 ~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~Vs 340 (368)
T 1mda_H 262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLD 340 (368)
T ss_dssp EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEE
T ss_pred ccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEE
Confidence 0001112689999998876543 2356699999999999987654 5789999999966788888 588885
Q ss_pred EEeccceeeeeee
Q psy307 624 KVQDANIVKIAVE 636 (1019)
Q Consensus 624 iwwd~~i~ki~~e 636 (1019)
++ |....++...
T Consensus 341 VI-D~~t~kvv~~ 352 (368)
T 1mda_H 341 IY-DAASDQDQSS 352 (368)
T ss_dssp EE-ESSSCEEEEE
T ss_pred EE-ECCCCcEEEE
Confidence 54 5555555433
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.5e-09 Score=121.78 Aligned_cols=188 Identities=12% Similarity=0.027 Sum_probs=104.5
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR 427 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~ 427 (1019)
+..+++++.||.|..||. .+++.+..+.. ..+.+..+..++ .++++++.||.|+.||.. +++
T Consensus 9 ~~~v~~gs~dg~v~a~d~-~tG~~~W~~~~--~~~~s~p~~~~g--------------~~~v~~s~dg~l~a~d~~-tG~ 70 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSK-RTGSIKWTLKE--DPVLQVPTHVEE--------------PAFLPDPNDGSLYTLGSK-NNE 70 (369)
T ss_dssp TTEEEEEETTSEEEEEET-TTCCEEEEEEC--CCSCCCC-------------------CCEEECTTTCCEEEC------C
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCEEEEecC--CCceecceEcCC--------------CEEEEeCCCCEEEEEECC-CCc
Confidence 568999999999999998 45566666654 344443333333 467777899999999984 344
Q ss_pred EEEEEccccc-cEe-EEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeC
Q psy307 428 CVRTYYGHRQ-AVR-DICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIAD 505 (1019)
Q Consensus 428 ~~~~l~~H~~-~V~-sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~ 505 (1019)
.+..+..+.. .+. +..+. ++..+++++.|+.|..||..+|+.+..+..+..
T Consensus 71 ~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~-------------------------- 123 (369)
T 2hz6_A 71 GLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA-------------------------- 123 (369)
T ss_dssp CSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC---------------------------------------
T ss_pred eeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc--------------------------
Confidence 3333333211 111 01111 345678888999999999999998766653220
Q ss_pred CCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCC---CEEEEEeCCCeEEEE
Q psy307 506 PTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM---SYLISGDADGKCYIW 582 (1019)
Q Consensus 506 ~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg---~~Lasgs~DG~I~IW 582 (1019)
..++|++..+++++.|+.|+.||..++....... ... .....+++++ ..+++++.||.|+.|
T Consensus 124 --------~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~------~~~~~~~~~~~~~~~v~~~~~dg~v~a~ 188 (369)
T 2hz6_A 124 --------DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT-YFD------YAASLPEDDVDYKMSHFVSNGDGLVVTV 188 (369)
T ss_dssp -----------------EEEEEEEEEEECCCSSSSSCCCEEE-EEE------ECCBCCCCCTTCCCCEEEEETSCEEEEE
T ss_pred --------ccccccCCEEEEEecCCEEEEEECCCCCEEEeEe-ccc------ccCccccCCccccceEEEECCCCEEEEE
Confidence 1224467888999999999999998875433222 111 1123344432 457778899999999
Q ss_pred eCCCCceeeeeec
Q psy307 583 DWKTTKLFKKWKA 595 (1019)
Q Consensus 583 Dl~t~~~l~~l~~ 595 (1019)
|..+|+.+.....
T Consensus 189 d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 189 DSESGDVLWIQNY 201 (369)
T ss_dssp CTTTCCEEEEEEC
T ss_pred ECCCCcEEEEecC
Confidence 9999998877663
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.1e-07 Score=105.22 Aligned_cols=266 Identities=9% Similarity=-0.091 Sum_probs=156.5
Q ss_pred CCeeeeCCCCC----ceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEee----------CCCeEEEE
Q psy307 298 GRSFLHPPHDV----GTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCS----------MDCRVKLW 363 (1019)
Q Consensus 298 gr~~~~~~~D~----~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs----------~Dg~I~IW 363 (1019)
.+.+++-..+. .|.+.+.. ..+.+.++..-..+ .+.++|+ +..++++. .++.|.+|
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~-------t~~v~~~i~vG~~P--~i~~spD-g~~lyVan~~~~r~~~G~~~~~Vsvi 101 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAG-------CGVTLGHSLGAFLS--LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVF 101 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETT-------TTEEEEEEEECTTC--EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEE
T ss_pred CeEEEECCccCCccceEEEEECC-------CCeEEEEEeCCCCC--ceEECCC-CCEEEEEcccccccccCCCCCEEEEE
Confidence 45666655554 55566654 23566777555555 7999997 55555554 47899999
Q ss_pred ecCCCcEEEEEeccc-------CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC--CCcEEE--EEccCCCeEEEEE
Q psy307 364 EVYKERRCVRTYYGH-------RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM--DCRVKL--WEVYKEHRCVRTY 432 (1019)
Q Consensus 364 dl~~~~~~~~~~~gh-------~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~--Dg~I~I--WDl~~~~~~~~~l 432 (1019)
|+ ...+.+.++.-. ......+.++||| ++++++.. +..|.+ +|+.+ +..+
T Consensus 102 D~-~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDG--------------k~lyVan~~~~~~v~V~~iD~~t----v~~i 162 (368)
T 1mda_H 102 DP-VTFLPIADIELPDAPRFSVGPRVHIIGNCASS--------------ACLLFFLFGSSAAAGLSVPGASD----DQLT 162 (368)
T ss_dssp CT-TTCCEEEEEEETTSCSCCBSCCTTSEEECTTS--------------SCEEEEECSSSCEEEEEETTTEE----EEEE
T ss_pred EC-CCCCEEEEEECCCccccccCCCcceEEEcCCC--------------CEEEEEccCCCCeEEEEEEchhh----ceEE
Confidence 99 455666766432 1235678899998 45666653 467888 88854 2333
Q ss_pred ccccccEeEEEEecCCC-EEEEEEcCCeEEEEECCC-----CceEEE----EecCCceEEEEEecCCCeeeeccCCCcee
Q psy307 433 YGHRQAVRDICFNNTGT-NFISAGYDRYLKLWDTES-----GECISR----FTSRKVAYCVKFHPDEDKQHLDIPVDMKY 502 (1019)
Q Consensus 433 ~~H~~~V~sl~fspdg~-~l~S~s~Dg~I~lWDl~t-----~~~i~~----~~~~~~v~~v~~~p~~~~~~~~~~~~~~~ 502 (1019)
.. .+. +.+.|+++ .+++.+.|+.+.+.|+.+ ++.... +.....+. . .+++....+... ....
T Consensus 163 ~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~-~~V~ 234 (368)
T 1mda_H 163 KS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA-SSIL 234 (368)
T ss_dssp EC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS-SCCE
T ss_pred EC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC-CEEE
Confidence 21 111 12334443 456667788888888876 332211 11111222 2 333332211111 1111
Q ss_pred eeCC-----------------------CCCcccEEEEcCCCCEEEEEec---------CCeEEEEEccCcccccceeEEe
Q psy307 503 IADP-----------------------TMHSMPAVTSSPNNKWLACQSM---------DNKILIFSALNRFKLNRKKTFE 550 (1019)
Q Consensus 503 i~~~-----------------------~~~~i~~v~~spdg~~Lasgs~---------Dg~I~iwd~~~~~~~~~~~~l~ 550 (1019)
..+. .......++++|+++.++++.. ++.+.++|+.+...+..+.
T Consensus 235 viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~--- 311 (368)
T 1mda_H 235 QGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS--- 311 (368)
T ss_dssp EEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE---
T ss_pred EEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE---
Confidence 1110 0011223789999998887643 2456799998875443322
Q ss_pred ccccccceEEEEEcCCCC-EEEEEe-CCCeEEEEeCCCCceeeeeeccCCCEEEEEEcC
Q psy307 551 GHMVAGYACSLDFSPDMS-YLISGD-ADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHP 607 (1019)
Q Consensus 551 gh~~~~~V~~v~fspdg~-~Lasgs-~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp 607 (1019)
.. .....++|+|||+ .+++.. .++.|.++|+.+++.+.++.....+ .++++++
T Consensus 312 vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P-~~i~~~~ 366 (368)
T 1mda_H 312 NG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP-ESLSVQN 366 (368)
T ss_dssp EE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCC-CEEECCC
T ss_pred CC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCC-CEEEeec
Confidence 21 2367899999998 455666 5899999999999999999866543 5666553
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.76 E-value=3.9e-06 Score=91.91 Aligned_cols=201 Identities=11% Similarity=0.137 Sum_probs=125.4
Q ss_pred CCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCce
Q psy307 391 GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGEC 470 (1019)
Q Consensus 391 g~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~ 470 (1019)
+..+.-+..|+|..+.++++...++.|..||...... ..+ .+...+.+++++++|+++++ . ++.|.+||..+++.
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSA 85 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcE
Confidence 3344456677777778888888999999999854332 222 24567999999999995544 4 67899999988764
Q ss_pred EEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC---------CeEEEEEccCcc
Q psy307 471 ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD---------NKILIFSALNRF 541 (1019)
Q Consensus 471 i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D---------g~I~iwd~~~~~ 541 (1019)
........ ......+..++++|+|+++++...+ ....+|.+....
T Consensus 86 ~~~~~~~~--------------------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g 139 (297)
T 3g4e_A 86 VVLATVDN--------------------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH 139 (297)
T ss_dssp EEEEECCT--------------------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS
T ss_pred EEEEecCC--------------------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC
Confidence 33222110 0011235568888899866654322 223444443221
Q ss_pred cccceeEEeccccccceEEEEEcCCCCEEE-EEeCCCeEEEEeC--CCCce-----eeeeeccCCCEEEEEEcCCCCcEE
Q psy307 542 KLNRKKTFEGHMVAGYACSLDFSPDMSYLI-SGDADGKCYIWDW--KTTKL-----FKKWKAHDGVCISTLWHPHEPSKV 613 (1019)
Q Consensus 542 ~~~~~~~l~gh~~~~~V~~v~fspdg~~La-sgs~DG~I~IWDl--~t~~~-----l~~l~~h~~~V~sl~~sp~~~~~l 613 (1019)
.. ..+.... .....++|+|||+.|+ +.+.++.|.+||+ .++.+ +..+..+.+.+.++++.++| .+.
T Consensus 140 ~~---~~~~~~~--~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lw 213 (297)
T 3g4e_A 140 HV---KKYFDQV--DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLW 213 (297)
T ss_dssp CE---EEEEEEE--SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEE
T ss_pred CE---EEEeecc--ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEE
Confidence 11 1122221 3467899999998765 4556789999987 45543 22333445678899999998 566
Q ss_pred EEEeCCCcEEEEeccc
Q psy307 614 VTAGWDAATAKVQDAN 629 (1019)
Q Consensus 614 ~s~s~Dg~I~iwwd~~ 629 (1019)
++...++.|.+| +.+
T Consensus 214 va~~~~~~v~~~-d~~ 228 (297)
T 3g4e_A 214 VACYNGGRVIRL-DPV 228 (297)
T ss_dssp EEEETTTEEEEE-CTT
T ss_pred EEEcCCCEEEEE-cCC
Confidence 666666677554 544
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.73 E-value=4e-06 Score=95.56 Aligned_cols=226 Identities=13% Similarity=0.128 Sum_probs=141.3
Q ss_pred CCCCcEEEEeeCCCeEEEEecCCC---cEEEEEec------c-cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC-
Q psy307 345 PKSAHLLLSCSMDCRVKLWEVYKE---RRCVRTYY------G-HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM- 413 (1019)
Q Consensus 345 pd~g~lLaSgs~Dg~I~IWdl~~~---~~~~~~~~------g-h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~- 413 (1019)
++...++++|..++.|.|.|+... .+...++. . ....-..+..+|+| +++++..
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG---------------i~Vs~~g~ 157 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA---------------IYISALGN 157 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC---------------EEEEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe---------------EEEEcCCC
Confidence 665667778889999999998432 24555552 0 11234456667776 2333333
Q ss_pred -----CCcEEEEEccCCCeEEEEEccc--c-ccEeEEEEecCCCEEEEEE-------------------cCCeEEEEECC
Q psy307 414 -----DCRVKLWEVYKEHRCVRTYYGH--R-QAVRDICFNNTGTNFISAG-------------------YDRYLKLWDTE 466 (1019)
Q Consensus 414 -----Dg~I~IWDl~~~~~~~~~l~~H--~-~~V~sl~fspdg~~l~S~s-------------------~Dg~I~lWDl~ 466 (1019)
.|.|.+.|. .+.+.+..+... . .--..+.|+|+++.+++.. .+.+|.+||+.
T Consensus 158 ~~g~~~g~v~vlD~-~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~ 236 (462)
T 2ece_A 158 EEGEGPGGILMLDH-YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR 236 (462)
T ss_dssp TTSCSCCEEEEECT-TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT
T ss_pred cCCCCCCeEEEEEC-CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC
Confidence 378999998 556666666522 2 2234578899999888885 37899999999
Q ss_pred CCceEEEEecCC---ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEe------cCCeEEEEEc
Q psy307 467 SGECISRFTSRK---VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQS------MDNKILIFSA 537 (1019)
Q Consensus 467 t~~~i~~~~~~~---~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs------~Dg~I~iwd~ 537 (1019)
+++.+.++.... .+..+. ++++|+++++.+++ .+++|.+|..
T Consensus 237 ~~k~~~tI~vg~~g~~P~~i~-----------------------------f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~ 287 (462)
T 2ece_A 237 KRKRIHSLTLGEENRMALELR-----------------------------PLHDPTKLMGFINMVVSLKDLSSSIWLWFY 287 (462)
T ss_dssp TTEEEEEEESCTTEEEEEEEE-----------------------------ECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred CCcEeeEEecCCCCCccceeE-----------------------------eeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence 988888776541 222222 23477787777766 4568877665
Q ss_pred cCcccccceeEE--ecc-----c---------cccceEEEEEcCCCCEEEEEeC-CCeEEEEeCCC---CceeeeeeccC
Q psy307 538 LNRFKLNRKKTF--EGH-----M---------VAGYACSLDFSPDMSYLISGDA-DGKCYIWDWKT---TKLFKKWKAHD 597 (1019)
Q Consensus 538 ~~~~~~~~~~~l--~gh-----~---------~~~~V~~v~fspdg~~Lasgs~-DG~I~IWDl~t---~~~l~~l~~h~ 597 (1019)
..+ .....+.+ ... . ....+..|.+||||++|.++.. .+.|.+||+.. .+++..+....
T Consensus 288 d~g-~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG 366 (462)
T 2ece_A 288 EDG-KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGG 366 (462)
T ss_dssp ETT-EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBT
T ss_pred cCC-ceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCC
Confidence 432 22222211 000 0 0134678999999999887765 67999999853 35555554321
Q ss_pred --------------CCEEEEEEcCCCCcEEEEE
Q psy307 598 --------------GVCISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 598 --------------~~V~sl~~sp~~~~~l~s~ 616 (1019)
+.-..++++|+|..++++.
T Consensus 367 ~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 367 IFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 1247889999995444444
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.4e-06 Score=95.78 Aligned_cols=225 Identities=8% Similarity=-0.059 Sum_probs=137.6
Q ss_pred CCCCCCC-eeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE
Q psy307 293 PTDYQGR-SFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC 371 (1019)
Q Consensus 293 ~~~~~gr-~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~ 371 (1019)
.++++|+ .+++...++.+..|+... .+..+..+...+.+++++++ +.++++...++.|.+|+.......
T Consensus 51 ~~~~~g~~l~~~d~~~~~i~~~~~~g---------~~~~~~~~~~~~~gl~~d~d-G~l~v~~~~~~~v~~~~~~g~~~~ 120 (305)
T 3dr2_A 51 AWWEAQRTLVWSDLVGRRVLGWREDG---------TVDVLLDATAFTNGNAVDAQ-QRLVHCEHGRRAITRSDADGQAHL 120 (305)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEETTS---------CEEEEEESCSCEEEEEECTT-SCEEEEETTTTEEEEECTTSCEEE
T ss_pred eEeCCCCEEEEEECCCCEEEEEeCCC---------CEEEEeCCCCccceeeECCC-CCEEEEECCCCEEEEECCCCCEEE
Confidence 4567787 566776778888885431 13455667778999999996 676666666789999997422111
Q ss_pred EE-Eeccc-CccEeEEEEcCCCCceeEEEeecCCCCcEEEE----EeC-------------CCcEEEEEccCCCeEEEEE
Q psy307 372 VR-TYYGH-RQAVRDICFNNTGTNFISAIRWFPKSAHLLLS----CSM-------------DCRVKLWEVYKEHRCVRTY 432 (1019)
Q Consensus 372 ~~-~~~gh-~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~s----gs~-------------Dg~I~IWDl~~~~~~~~~l 432 (1019)
+. ...+. ...+.++++.++| .++++ |.. .+.|..||.. ++......
T Consensus 121 ~~~~~~~~~~~~~~~i~~d~dG--------------~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~-~g~~~~~~ 185 (305)
T 3dr2_A 121 LVGRYAGKRLNSPNDLIVARDG--------------AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD-GSPLQRMA 185 (305)
T ss_dssp EECEETTEECSCCCCEEECTTS--------------CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS-SCCCEEEE
T ss_pred EEeccCCCccCCCCCEEECCCC--------------CEEEeCcCCCccccccccccccccCCCeEEEEcCC-CCcEEEEe
Confidence 11 11111 1346778888888 45554 221 2456666652 23322222
Q ss_pred ccccccEeEEEEecCCCEEEEEEcC------CeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCC
Q psy307 433 YGHRQAVRDICFNNTGTNFISAGYD------RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADP 506 (1019)
Q Consensus 433 ~~H~~~V~sl~fspdg~~l~S~s~D------g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~ 506 (1019)
.......++|+|+++.|+.+... +.|.+||+..+. +.... .....
T Consensus 186 --~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~--------------------------~~~~~ 236 (305)
T 3dr2_A 186 --DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRR--------------------------HFASV 236 (305)
T ss_dssp --EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEE--------------------------EEECC
T ss_pred --cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCe--------------------------EEEEC
Confidence 44567789999999988777665 689999886553 21100 00000
Q ss_pred CCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEE
Q psy307 507 TMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCY 580 (1019)
Q Consensus 507 ~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~ 580 (1019)
.......++++++|++. +++. +.|.+|+.... ....+..+. .+.+++|+|+++.|..++.++..+
T Consensus 237 ~~~~pdgi~~d~~G~lw-v~~~-~gv~~~~~~g~----~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 237 PDGLPDGFCVDRGGWLW-SSSG-TGVCVFDSDGQ----LLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp SSSCCCSEEECTTSCEE-ECCS-SEEEEECTTSC----EEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCCCCCeEEECCCCCEE-EecC-CcEEEECCCCC----EEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 11234568889999854 4444 45999998532 233443332 367899999999888887765433
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.6e-06 Score=98.12 Aligned_cols=245 Identities=9% Similarity=0.048 Sum_probs=148.6
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCC--eEEEEecCCCcEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDC--RVKLWEVYKERRC 371 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg--~I~IWdl~~~~~~ 371 (1019)
++.+|+.+++...+..|+.|+.... .+.++.+...... ++|+|+ +..|+++..++ .|.+|+......
T Consensus 138 ~d~~g~lyv~d~~~~~I~~id~~~g--------~~~~~~~~~~~~~-ia~~~~-g~~l~~~d~~~~~~I~~~d~~~~~~- 206 (409)
T 3hrp_A 138 AVGNNTVLAYQRDDPRVRLISVDDN--------KVTTVHPGFKGGK-PAVTKD-KQRVYSIGWEGTHTVYVYMKASGWA- 206 (409)
T ss_dssp ECSTTEEEEEETTTTEEEEEETTTT--------EEEEEEETCCBCB-CEECTT-SSEEEEEBSSTTCEEEEEEGGGTTC-
T ss_pred EeCCCCEEEEecCCCcEEEEECCCC--------EEEEeeccCCCCc-eeEecC-CCcEEEEecCCCceEEEEEcCCCce-
Confidence 4577888888887888999876532 1222222233334 999996 66777777665 788888744332
Q ss_pred EEEe----cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEE---EccccccE--eEE
Q psy307 372 VRTY----YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRT---YYGHRQAV--RDI 442 (1019)
Q Consensus 372 ~~~~----~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~---l~~H~~~V--~sl 442 (1019)
...+ ..+...+.+++++|++ ..|+.+..++.|+.||.......... ..++...- ..+
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~--------------g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~i 272 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETE--------------EWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYL 272 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTS--------------SEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCC--------------CeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccE
Confidence 2222 2144566778888743 24444677889999998544322211 22222222 389
Q ss_pred EEecC-CCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCC
Q psy307 443 CFNNT-GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK 521 (1019)
Q Consensus 443 ~fspd-g~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~ 521 (1019)
+|+|+ +..+++...++.|+.||.... +..+..... ..+ . ... ............++++|+|+
T Consensus 273 a~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~-------~~g------~-~dg-~~~~~~~~~P~gia~d~dG~ 335 (409)
T 3hrp_A 273 IYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSAT-------QKT------V-QDG-LREEALFAQPNGMTVDEDGN 335 (409)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTT-------CCS------C-BCE-EGGGCBCSSEEEEEECTTCC
T ss_pred EEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCC-------CCC------c-CCC-cccccEeCCCeEEEEeCCCC
Confidence 99995 555556566789999987643 222211100 000 0 000 00111123456899999999
Q ss_pred EEEEEe-cCCeEEEEEccCcccccceeEEeccc-------------cccceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy307 522 WLACQS-MDNKILIFSALNRFKLNRKKTFEGHM-------------VAGYACSLDFSPDMSYLISGDADGKCYIWDW 584 (1019)
Q Consensus 522 ~Lasgs-~Dg~I~iwd~~~~~~~~~~~~l~gh~-------------~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl 584 (1019)
++++-+ .++.|+.|++.++. +.++.++. .-.....++++++|.++++-..+++|+.+++
T Consensus 336 lyvad~~~~~~I~~~~~~~G~----v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 336 FYIVDGFKGYCLRKLDILDGY----VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEETTTTCEEEEEETTTTE----EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEEeCCCCCEEEEEECCCCE----EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 888887 88999999976542 23333330 0135789999999888888888888888765
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.2e-06 Score=104.17 Aligned_cols=209 Identities=12% Similarity=0.097 Sum_probs=121.6
Q ss_pred cEEEEEeCCC-------------------cEEEEEccCCCeEEEEEcc--cc-------ccEeEEEEecCCC---EEEEE
Q psy307 406 HLLLSCSMDC-------------------RVKLWEVYKEHRCVRTYYG--HR-------QAVRDICFNNTGT---NFISA 454 (1019)
Q Consensus 406 ~~L~sgs~Dg-------------------~I~IWDl~~~~~~~~~l~~--H~-------~~V~sl~fspdg~---~l~S~ 454 (1019)
.+++.++.++ .|..||.. +++.+..+.. |. ..+.......+|+ .++.+
T Consensus 247 ~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~-TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~ 325 (689)
T 1yiq_A 247 NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNAD-TGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQA 325 (689)
T ss_dssp TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETT-TCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEEC
T ss_pred CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEcc-CCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEE
Confidence 5677777765 39999994 5555555543 32 1122222233565 68889
Q ss_pred EcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeee----c--cCCCceeeeCC---CCCcccEEEEcCCCCEEEE
Q psy307 455 GYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL----D--IPVDMKYIADP---TMHSMPAVTSSPNNKWLAC 525 (1019)
Q Consensus 455 s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~----~--~~~~~~~i~~~---~~~~i~~v~~spdg~~Las 525 (1019)
+.+|.+.++|.++|+.+...........-.+.+....-+. . .+.....+..+ ....-..++++|+..++++
T Consensus 326 ~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv 405 (689)
T 1yiq_A 326 PKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYI 405 (689)
T ss_dssp CTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEE
T ss_pred CCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEE
Confidence 9999999999999999876654331111111110000000 0 00001111111 1112234677887777766
Q ss_pred Eec---------------------------------------------CCeEEEEEccCcccccceeEEeccccccceEE
Q psy307 526 QSM---------------------------------------------DNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560 (1019)
Q Consensus 526 gs~---------------------------------------------Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~ 560 (1019)
.+. +|.|..||+.++... -.+..+. ....
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~---W~~~~~~---~~~~ 479 (689)
T 1yiq_A 406 PAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAA---WEVPYVT---IFNG 479 (689)
T ss_dssp EEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEE---EEEEESS---SCCC
T ss_pred eccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeE---eEccCCC---CccC
Confidence 532 378999999887443 2222221 1222
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCC-EEEEEEcCCCCcEEEEEeCCCc
Q psy307 561 LDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGV-CISTLWHPHEPSKVVTAGWDAA 621 (1019)
Q Consensus 561 v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~-V~sl~~sp~~~~~l~s~s~Dg~ 621 (1019)
..++..|.+|++|+.||.|+.||.++|+.+.+++...+. ..-+.|..+|..++++.+..|.
T Consensus 480 g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G~gg 541 (689)
T 1yiq_A 480 GTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAGWGG 541 (689)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCT
T ss_pred ccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEecCCc
Confidence 345557889999999999999999999999988755432 2346667788767766655443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.4e-05 Score=88.79 Aligned_cols=189 Identities=12% Similarity=-0.011 Sum_probs=117.6
Q ss_pred EEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEec
Q psy307 397 AIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTS 476 (1019)
Q Consensus 397 ~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~ 476 (1019)
+..|+|+.+.++++...++.|..||... +... .+ .+...+.+++|+++|+.+++. . ..|.+||..+++.......
T Consensus 53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~-~~~~-~~-~~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~ 127 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNILERELHELHLAS-GRKT-VH-ALPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAEL 127 (326)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTT-TEEE-EE-ECSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECS
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEECCC-CcEE-EE-ECCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeC
Confidence 3445555557888888889999999843 3332 22 234679999999999876654 4 4599999988765322111
Q ss_pred CCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec------CCeEEEEEccCcccccceeEEe
Q psy307 477 RKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM------DNKILIFSALNRFKLNRKKTFE 550 (1019)
Q Consensus 477 ~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~------Dg~I~iwd~~~~~~~~~~~~l~ 550 (1019)
.. ......+..++++|+|+++++... .+.|..++ ++ .. ..+.
T Consensus 128 ~~--------------------------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g-~~---~~~~ 175 (326)
T 2ghs_A 128 ES--------------------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG-KV---TKLF 175 (326)
T ss_dssp ST--------------------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-EE---EEEE
T ss_pred CC--------------------------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-cE---EEee
Confidence 00 001123567888899987665442 24565565 32 11 1221
Q ss_pred ccccccceEEEEEcCCCCEEEEE-eCCCeEEEEeCC--CC-ce-----eeeeeccCCCEEEEEEcCCCCcEEEEEeCCCc
Q psy307 551 GHMVAGYACSLDFSPDMSYLISG-DADGKCYIWDWK--TT-KL-----FKKWKAHDGVCISTLWHPHEPSKVVTAGWDAA 621 (1019)
Q Consensus 551 gh~~~~~V~~v~fspdg~~Lasg-s~DG~I~IWDl~--t~-~~-----l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~ 621 (1019)
... .....++|+|||+.|+.+ +.++.|.+||+. ++ .. +..+....+.+.++++.++| .++++...++.
T Consensus 176 ~~~--~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~ 252 (326)
T 2ghs_A 176 ADI--SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGA 252 (326)
T ss_dssp EEE--SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTE
T ss_pred CCC--cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCE
Confidence 211 346789999999876554 457899999986 56 32 22233344567889999988 45555555677
Q ss_pred EEEE
Q psy307 622 TAKV 625 (1019)
Q Consensus 622 I~iw 625 (1019)
|.+|
T Consensus 253 v~~~ 256 (326)
T 2ghs_A 253 VDRY 256 (326)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7665
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.8e-06 Score=106.67 Aligned_cols=236 Identities=15% Similarity=0.127 Sum_probs=144.2
Q ss_pred CCCCCCCeee-----eCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCC---------
Q psy307 293 PTDYQGRSFL-----HPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDC--------- 358 (1019)
Q Consensus 293 ~~~~~gr~~~-----~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg--------- 358 (1019)
.++++|+.++ .|..+..|.+|+...... + ..++.+. ....++|+ | ++.|+.++.+.
T Consensus 135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~--~----~~~~~~~--k~~~~~Ws-D-g~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQP--L----ETPLKDV--KFSGISWL-G-NEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEEEETTTCSE--E----EEEEEEE--ESCCCEEE-T-TTEEEEEESSCCC-------
T ss_pred EECCCCCEEEEEEecCCCceEEEEEEECCCCCC--C----ccccCCc--eeccEEEe-C-CCEEEEEEecCccccccccc
Confidence 4788999888 444456788888764321 0 1112211 13567899 7 55566665553
Q ss_pred ----eEEEEecCCCc---EEEEEecc-cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC---CCcEEEEEccCCCe
Q psy307 359 ----RVKLWEVYKER---RCVRTYYG-HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM---DCRVKLWEVYKEHR 427 (1019)
Q Consensus 359 ----~I~IWdl~~~~---~~~~~~~g-h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~---Dg~I~IWDl~~~~~ 427 (1019)
.|++|++.+.. .++..... |...+..+.|+|||. .++++.+. ++.|.+||+.....
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~-------------~l~~~~~~~~~~~~i~~~d~~~~~~ 271 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDR-------------FLLISAANSTSGNRLYVKDLSQENA 271 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSC-------------EEEEEEESSSSCCEEEEEETTSTTC
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCC-------------EEEEEEccCCCCcEEEEEECCCCCC
Confidence 49999985443 34444444 555677888999885 23344332 35899999865544
Q ss_pred EEEEEccccccEeEEEEecCCCEEEEEEc-C---CeEEEEECCCCce--EEEEecCCceEEEEEecCCCeeeeccCCCce
Q psy307 428 CVRTYYGHRQAVRDICFNNTGTNFISAGY-D---RYLKLWDTESGEC--ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMK 501 (1019)
Q Consensus 428 ~~~~l~~H~~~V~sl~fspdg~~l~S~s~-D---g~I~lWDl~t~~~--i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~ 501 (1019)
....+..+....... |+++|..|+..+. + +.|..||+.++.. ...+..
T Consensus 272 ~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~------------------------- 325 (693)
T 3iuj_A 272 PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP------------------------- 325 (693)
T ss_dssp CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC-------------------------
T ss_pred ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec-------------------------
Confidence 455566666665554 6677777665544 3 5788899877643 111111
Q ss_pred eeeCCCCCcccEEEEcCCCCEEEEEecCC---eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC--
Q psy307 502 YIADPTMHSMPAVTSSPNNKWLACQSMDN---KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD-- 576 (1019)
Q Consensus 502 ~i~~~~~~~i~~v~~spdg~~Lasgs~Dg---~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D-- 576 (1019)
+...+. .++++++.|+....++ .|++|++.++. ...+... ..+.+..+.+++++..|+....+
T Consensus 326 -----~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~----~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~ 393 (693)
T 3iuj_A 326 -----ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR----VREVALP-GLGSVSGFNGKHDDPALYFGFENYA 393 (693)
T ss_dssp -----CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE----EEEECCS-SSSEEEECCCCTTCSCEEEEEECSS
T ss_pred -----CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe----eEEeecC-CCceEEeeecCCCCCEEEEEecCCC
Confidence 111122 6778888887766544 78899887542 1222211 12557778888988877665544
Q ss_pred --CeEEEEeCCCCce
Q psy307 577 --GKCYIWDWKTTKL 589 (1019)
Q Consensus 577 --G~I~IWDl~t~~~ 589 (1019)
++|+.||+.+++.
T Consensus 394 tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 394 QPPTLYRFEPKSGAI 408 (693)
T ss_dssp SCCEEEEECTTTCCE
T ss_pred CCCEEEEEECCCCeE
Confidence 7899999988763
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.4e-05 Score=83.84 Aligned_cols=194 Identities=9% Similarity=-0.009 Sum_probs=128.5
Q ss_pred EeEEEEcCCCCceeEEEeecCCCCcEEEEEeC--CCcEEEEEccCCCeEEEEEcc-ccccEeEEEEecCCCEEEEEE-cC
Q psy307 382 VRDICFNNTGTNFISAIRWFPKSAHLLLSCSM--DCRVKLWEVYKEHRCVRTYYG-HRQAVRDICFNNTGTNFISAG-YD 457 (1019)
Q Consensus 382 V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~--Dg~I~IWDl~~~~~~~~~l~~-H~~~V~sl~fspdg~~l~S~s-~D 457 (1019)
...+.|++++ .+.++.+. ++.|.+.|+ .+++.+..+.- .......+++. +..++.+. .+
T Consensus 23 ~~Gl~~~~dg--------------~Lyvstg~~~~s~v~~iD~-~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 23 TQGLVYAEND--------------TLFESTGLYGRSSVRQVAL-QTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEECSTT--------------EEEEEECSTTTCEEEEEET-TTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred cccEEEeCCC--------------eEEEECCCCCCCEEEEEEC-CCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 4677777665 44454443 689999999 45555555432 21222344554 55555544 57
Q ss_pred CeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEc
Q psy307 458 RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSA 537 (1019)
Q Consensus 458 g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~ 537 (1019)
+.+.++|..+.+.+.++... . |. ...++++|+.++++..+++|.++|.
T Consensus 86 ~~v~viD~~t~~v~~~i~~g-~-------~~------------------------g~glt~Dg~~l~vs~gs~~l~viD~ 133 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQ-M-------KD------------------------GWGLATDGKILYGSDGTSILYEIDP 133 (266)
T ss_dssp SEEEEEETTTTEEEEEEECC-S-------SS------------------------CCEEEECSSSEEEECSSSEEEEECT
T ss_pred CEEEEEECCCCcEEEEEECC-C-------CC------------------------eEEEEECCCEEEEECCCCeEEEEEC
Confidence 89999999999988877643 0 11 1224557777777777899999999
Q ss_pred cCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc-------------CCCEEEEE
Q psy307 538 LNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH-------------DGVCISTL 604 (1019)
Q Consensus 538 ~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h-------------~~~V~sl~ 604 (1019)
.+......+..-.....-..+..+.|. +|...+....++.|.+.|..+++.+..+... ....++++
T Consensus 134 ~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa 212 (266)
T 2iwa_A 134 HTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIA 212 (266)
T ss_dssp TTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEE
T ss_pred CCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEE
Confidence 876433322221111111236678888 7766666556789999999999999888642 13578999
Q ss_pred EcCCCCcEEEEEeCCCcEEEE
Q psy307 605 WHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 605 ~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
|+|++..+++|+...+++..+
T Consensus 213 ~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 213 WDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EETTTTEEEEEETTCSEEEEE
T ss_pred EcCCCCEEEEECCCCCeEEEE
Confidence 999998888888888888665
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.56 E-value=4.6e-05 Score=86.07 Aligned_cols=247 Identities=10% Similarity=0.023 Sum_probs=139.9
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR 427 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~ 427 (1019)
+..++.++.++.|..+|..+ ++.+................ ...++.++.++.|..+|.. +++
T Consensus 103 ~~~v~v~~~~g~l~a~d~~t-G~~~W~~~~~~~~~~~p~~~----------------~~~v~v~~~~g~l~~~d~~-tG~ 164 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSD-GTVAWQTKVAGEALSRPVVS----------------DGLVLIHTSNGQLQALNEA-DGA 164 (376)
T ss_dssp TTEEEEEETTSEEEEEETTT-CCEEEEEECSSCCCSCCEEE----------------TTEEEEECTTSEEEEEETT-TCC
T ss_pred CCEEEEEcCCCEEEEEECCC-CCEEEEEeCCCceEcCCEEE----------------CCEEEEEcCCCeEEEEECC-CCc
Confidence 35677888999999999844 44454443332211111111 1478888999999999984 444
Q ss_pred EEEEEccccccE-----eEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCc---------------eE----EE
Q psy307 428 CVRTYYGHRQAV-----RDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKV---------------AY----CV 483 (1019)
Q Consensus 428 ~~~~l~~H~~~V-----~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~---------------v~----~v 483 (1019)
.+.......... ...... +..++.++.++.|..+|..+|+.+........ +. .+
T Consensus 165 ~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v 242 (376)
T 3q7m_A 165 VKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVV 242 (376)
T ss_dssp EEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEE
T ss_pred EEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEE
Confidence 444443322111 112222 45678888899999999999998877654311 00 00
Q ss_pred E-EecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEE
Q psy307 484 K-FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562 (1019)
Q Consensus 484 ~-~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~ 562 (1019)
- ...++....++...... .+.........+.. ++..+++++.++.|..+|..++... ....... ...+..+.
T Consensus 243 ~~~~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~---w~~~~~~-~~~~~~~~ 315 (376)
T 3q7m_A 243 FALAYNGNLTALDLRSGQI-MWKRELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTL---WTQSDLL-HRLLTSPV 315 (376)
T ss_dssp EEECTTSCEEEEETTTCCE-EEEECCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEE---EEECTTT-TSCCCCCE
T ss_pred EEEecCcEEEEEECCCCcE-EeeccCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEE---EeecccC-CCcccCCE
Confidence 0 01122222222221111 11111122223332 4667888888999999999887433 2222110 01111222
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 563 fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
. .+..|+.++.+|.|+++|..+++.+.........+.+.....+ ..|+.++.+|.|..+
T Consensus 316 ~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~--~~l~v~~~~G~l~~~ 374 (376)
T 3q7m_A 316 L--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAAD--GKLLIQAKDGTVYSI 374 (376)
T ss_dssp E--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEET--TEEEEEBTTSCEEEE
T ss_pred E--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEEC--CEEEEEeCCCEEEEE
Confidence 2 3567888999999999999999998877654333322111123 368888889998665
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.9e-05 Score=83.75 Aligned_cols=176 Identities=9% Similarity=0.011 Sum_probs=116.2
Q ss_pred cEEEEEeCCC--cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEE-cCCeEEEEECCCCceEEEEecCCceEE
Q psy307 406 HLLLSCSMDC--RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG-YDRYLKLWDTESGECISRFTSRKVAYC 482 (1019)
Q Consensus 406 ~~L~sgs~Dg--~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s-~Dg~I~lWDl~t~~~i~~~~~~~~v~~ 482 (1019)
.+..+++.+| .|+++|+ .+++.+..+.-. .........+++..|..+. .++.+.++|..+.+.+.++......
T Consensus 54 ~LyestG~~g~S~v~~vD~-~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG-- 129 (262)
T 3nol_A 54 YFYESTGLNGRSSIRKVDI-ESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG-- 129 (262)
T ss_dssp EEEEEEEETTEEEEEEECT-TTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC--
T ss_pred EEEEECCCCCCceEEEEEC-CCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc--
Confidence 5677777766 8999999 455555555432 2333323333556666555 4889999999999999888753211
Q ss_pred EEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEE
Q psy307 483 VKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562 (1019)
Q Consensus 483 v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~ 562 (1019)
..++++++.|+.+..+++|.++|..+......+..-.....-..++.+.
T Consensus 130 -------------------------------~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe 178 (262)
T 3nol_A 130 -------------------------------WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELE 178 (262)
T ss_dssp -------------------------------CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEE
T ss_pred -------------------------------eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeE
Confidence 1223466777776668899999998764443333221111113355677
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc------------CCCEEEEEEcCCCCcEEEEEe
Q psy307 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH------------DGVCISTLWHPHEPSKVVTAG 617 (1019)
Q Consensus 563 fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h------------~~~V~sl~~sp~~~~~l~s~s 617 (1019)
|. +|+..+..-.++.|.+.|.++++.+..+... ....++++|+|++..+++||-
T Consensus 179 ~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 179 WV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 76 7776666656889999999999998887642 136799999999876666664
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.3e-06 Score=93.75 Aligned_cols=203 Identities=10% Similarity=0.056 Sum_probs=125.6
Q ss_pred ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe--CCCcEEEEEccCCCeEEEEE-------ccccccEeEEEEecCCCE
Q psy307 380 QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS--MDCRVKLWEVYKEHRCVRTY-------YGHRQAVRDICFNNTGTN 450 (1019)
Q Consensus 380 ~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs--~Dg~I~IWDl~~~~~~~~~l-------~~H~~~V~sl~fspdg~~ 450 (1019)
..+..++++++| +++++.. .++.++||.+. .+.. ..+ .+|-..+.+++++++++.
T Consensus 17 ~~p~~va~~~~g--------------~~~v~~~~~~~~~~~l~~~~-~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L 80 (343)
T 2qe8_A 17 LAPGNITLTPDG--------------RLFLSLHQFYQPEMQVAELT-QDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIV 80 (343)
T ss_dssp SCEEEEEECTTS--------------CEEEEECGGGCCSCSEEEEE-TTEE-EESCCCCSSCCCCCSCEEEEEECSSSEE
T ss_pred CCcceEEECCCC--------------CEEEEeCCCCCCceEEEEEC-CCCe-ecCCCcccCcccceeEeeEEEEcCCCcE
Confidence 578899999988 4555543 23436666664 3432 222 235578999999999876
Q ss_pred EEEEEc-----CCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCE-EE
Q psy307 451 FISAGY-----DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKW-LA 524 (1019)
Q Consensus 451 l~S~s~-----Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~-La 524 (1019)
+++-+. ++.|.+||+.+++.+..+.....+ .........+++++++.. ++
T Consensus 81 ~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~------------------------~~~~~~~~~v~vd~~~g~~yv 136 (343)
T 2qe8_A 81 WMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI------------------------TLSNSFVNDLAVDLIHNFVYI 136 (343)
T ss_dssp EEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT------------------------SCTTCCCCEEEEETTTTEEEE
T ss_pred EEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh------------------------cccccccceEEEecCCCEEEE
Confidence 665443 578999999999877666532110 011233567888876444 45
Q ss_pred EEe---cCCeEEEEEccCcccccceeEEeccc---------------------------cccceEEEEEcCCCCEEEEEe
Q psy307 525 CQS---MDNKILIFSALNRFKLNRKKTFEGHM---------------------------VAGYACSLDFSPDMSYLISGD 574 (1019)
Q Consensus 525 sgs---~Dg~I~iwd~~~~~~~~~~~~l~gh~---------------------------~~~~V~~v~fspdg~~Lasgs 574 (1019)
+.+ .++.|.+||+.++... ..+.+|. ....+..++|+|||++|+.++
T Consensus 137 td~~~~~~~~i~v~d~~~g~~~---r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~ 213 (343)
T 2qe8_A 137 SDPAPDDKAALIRVDLQTGLAA---RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP 213 (343)
T ss_dssp EECCSGGGCEEEEEETTTCCEE---EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE
T ss_pred EcCccCCCCeEEEEECCCCCEE---EEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEe
Confidence 554 6789999998755221 1121110 002367899999999998887
Q ss_pred CCC-eEEEEeCC---CC-----ceee--eeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 575 ADG-KCYIWDWK---TT-----KLFK--KWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 575 ~DG-~I~IWDl~---t~-----~~l~--~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
.++ .|+.++.. .+ +... ...++.+...++++.++| .++++...++.|.+|.
T Consensus 214 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 214 MHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVIT 275 (343)
T ss_dssp SSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEE
T ss_pred CCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCC-CEEEEccCCCeEEEEE
Confidence 776 45444431 11 1111 112344456789999987 6888888888887764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=9e-05 Score=79.46 Aligned_cols=221 Identities=10% Similarity=0.030 Sum_probs=134.2
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
..+.+++|+++++.++++...++.|.+++.... .....+.........+++++++ +.+.++....+
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~-~~~~~~~~~~~~p~~ia~d~~~-------------~~lyv~d~~~~ 101 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG-EPTTIIRQDLGSPEGIALDHLG-------------RTIFWTDSQLD 101 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSC-CCEEEECTTCCCEEEEEEETTT-------------TEEEEEETTTT
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCC-CcEEEEECCCCCccEEEEEecC-------------CeEEEEECCCC
Confidence 357899999976777777778899999998433 2222222222345667776654 25556666678
Q ss_pred cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc---CCeEEEEECCCCceEEEEecCCceEEEEEecCCCee
Q psy307 416 RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY---DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQ 492 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~---Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~ 492 (1019)
.|.++++..... .............++++|++..|+.+.. .+.|..+++..... ..+.
T Consensus 102 ~I~~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~~~~----------------- 162 (267)
T 1npe_A 102 RIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILA----------------- 162 (267)
T ss_dssp EEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEE-----------------
T ss_pred EEEEEEcCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-EEEE-----------------
Confidence 899999843322 1222222245688999997666655554 35777777643221 1110
Q ss_pred eeccCCCceeeeCCCCCcccEEEEcCCCCEE-EEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEE
Q psy307 493 HLDIPVDMKYIADPTMHSMPAVTSSPNNKWL-ACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLI 571 (1019)
Q Consensus 493 ~~~~~~~~~~i~~~~~~~i~~v~~spdg~~L-asgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~La 571 (1019)
.........++++|++..| ++....+.|.++|...... .....+. .....++.. +..|+
T Consensus 163 ------------~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~---~~~~~~~---~~P~gi~~d--~~~ly 222 (267)
T 1npe_A 163 ------------QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR---RKVLEGL---QYPFAVTSY--GKNLY 222 (267)
T ss_dssp ------------CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE---EEEEECC---CSEEEEEEE--TTEEE
T ss_pred ------------ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce---EEEecCC---CCceEEEEe--CCEEE
Confidence 0111234567888876655 4455668999999875421 1222221 334566654 44454
Q ss_pred EEe-CCCeEEEEeCCCCceeeeeeccCC-CEEEEEEcCCC
Q psy307 572 SGD-ADGKCYIWDWKTTKLFKKWKAHDG-VCISTLWHPHE 609 (1019)
Q Consensus 572 sgs-~DG~I~IWDl~t~~~l~~l~~h~~-~V~sl~~sp~~ 609 (1019)
.++ ..+.|.++|..+++.+..+..... ...++++.|++
T Consensus 223 va~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 223 YTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp EEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred EEECCCCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 444 568999999999999888864432 35677777765
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.3e-05 Score=88.31 Aligned_cols=213 Identities=10% Similarity=0.054 Sum_probs=139.5
Q ss_pred cEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeE
Q psy307 349 HLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRC 428 (1019)
Q Consensus 349 ~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~ 428 (1019)
..|+.++.++.|..+|.. ++....+..+...+.++...+++ .++.++.++.|..+|.. +..
T Consensus 108 ~~l~v~t~~~~l~~~d~~--g~~~~~~~~~~~~~~~~~~~~~g---------------~l~vgt~~~~l~~~d~~--g~~ 168 (330)
T 3hxj_A 108 DILYVTSMDGHLYAINTD--GTEKWRFKTKKAIYATPIVSEDG---------------TIYVGSNDNYLYAINPD--GTE 168 (330)
T ss_dssp TEEEEECTTSEEEEECTT--SCEEEEEECSSCCCSCCEECTTS---------------CEEEECTTSEEEEECTT--SCE
T ss_pred CEEEEEecCCEEEEEcCC--CCEEEEEcCCCceeeeeEEcCCC---------------EEEEEcCCCEEEEECCC--CCE
Confidence 457778889999999984 44455555455555666665555 46678888999999984 555
Q ss_pred EEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCC
Q psy307 429 VRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTM 508 (1019)
Q Consensus 429 ~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~ 508 (1019)
...+......+.++...+++..++.+ +.|..+| .+++.+..+... .
T Consensus 169 ~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~------------------------------~ 214 (330)
T 3hxj_A 169 KWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAG------------------------------Y 214 (330)
T ss_dssp EEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCS------------------------------S
T ss_pred eEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccC------------------------------C
Confidence 55555556667778887788755443 8899999 676655443321 1
Q ss_pred CcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy307 509 HSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK 588 (1019)
Q Consensus 509 ~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~ 588 (1019)
..+.++...++|. |.+++.++.|..++.... . ...+.... ..+.++.+.++|. |..++.+|.|..+|. +++
T Consensus 215 ~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g~-~---~~~~~~~~--~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~ 285 (330)
T 3hxj_A 215 WTVTRPAISEDGT-IYVTSLDGHLYAINPDGT-E---KWRFKTGK--RIESSPVIGNTDT-IYFGSYDGHLYAINP-DGT 285 (330)
T ss_dssp CCCSCCEECTTSC-EEEEETTTEEEEECTTSC-E---EEEEECSS--CCCSCCEECTTSC-EEEECTTCEEEEECT-TSC
T ss_pred cceeceEECCCCe-EEEEcCCCeEEEECCCCC-E---eEEeeCCC--CccccceEcCCCe-EEEecCCCCEEEECC-CCc
Confidence 2355566677764 556677888888875332 2 22222221 2233455565665 666778888999995 777
Q ss_pred eeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 589 LFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 589 ~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.+..+......+.++...+++ .|..++.+|.+.+.
T Consensus 286 ~~~~~~~~~~~~~~~~~d~~g--~l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 286 EKWNFETGSWIIATPVIDENG--TIYFGTRNGKFYAL 320 (330)
T ss_dssp EEEEEECSSCCCSCCEECTTC--CEEEECTTSCEEEE
T ss_pred EEEEEEcCCccccceEEcCCC--EEEEEcCCCeEEEE
Confidence 777766555566777776766 47778889988654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.7e-05 Score=84.27 Aligned_cols=175 Identities=9% Similarity=-0.070 Sum_probs=117.0
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE-EEcCCeEEEEECCCCceEEEEecCCceEEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS-AGYDRYLKLWDTESGECISRFTSRKVAYCVK 484 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S-~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~ 484 (1019)
.+..+.+.+|.|+++|+.+ ++.+..+ -..........++++.|+. .-.++.+.++|..+.+.+.++......
T Consensus 66 ~Ly~stG~~g~v~~iD~~T-gkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG---- 138 (268)
T 3nok_A 66 HFFESTGHQGTLRQLSLES-AQPVWME--RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG---- 138 (268)
T ss_dssp EEEEEETTTTEEEECCSSC-SSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCC----
T ss_pred EEEEEcCCCCEEEEEECCC-CcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCce----
Confidence 6788888889999999954 4444443 1223333223334455444 445889999999999999888753211
Q ss_pred EecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEc
Q psy307 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564 (1019)
Q Consensus 485 ~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fs 564 (1019)
.. ++++++.|+.+..+++|.++|..+......+..-.....-..++.+.|.
T Consensus 139 ---------------------------wG--Lt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~ 189 (268)
T 3nok_A 139 ---------------------------WG--LCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA 189 (268)
T ss_dssp ---------------------------CC--EEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred ---------------------------eE--EecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe
Confidence 11 2346777877777999999999886444333322221111345677777
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeeeeecc-------------CCCEEEEEEcCCCCcEEEEEe
Q psy307 565 PDMSYLISGDADGKCYIWDWKTTKLFKKWKAH-------------DGVCISTLWHPHEPSKVVTAG 617 (1019)
Q Consensus 565 pdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h-------------~~~V~sl~~sp~~~~~l~s~s 617 (1019)
+|+..+..-.+..|.+.|.++++.+..+... ....++++|+|++..+++||-
T Consensus 190 -dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 190 -NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp -TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred -CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 7776665556789999999999998887632 136799999999877777764
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=4e-05 Score=94.10 Aligned_cols=194 Identities=12% Similarity=0.098 Sum_probs=111.8
Q ss_pred cEEEEEccCCCeEEEEEcc--cc-------ccEeEEEEecCC---CEEEEEEcCCeEEEEECCCCceEEEEecCCceEEE
Q psy307 416 RVKLWEVYKEHRCVRTYYG--HR-------QAVRDICFNNTG---TNFISAGYDRYLKLWDTESGECISRFTSRKVAYCV 483 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~--H~-------~~V~sl~fspdg---~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v 483 (1019)
.|..+|.. +++.+..+.. |. .....+....+| ..++.++.+|.|.++|..+|+.+..+........-
T Consensus 284 sv~AlD~~-TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~ 362 (677)
T 1kb0_A 284 SIVALDPD-TGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS 362 (677)
T ss_dssp EEEEECTT-TCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred EEEEEECC-CCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence 58999984 4555554432 31 112222334477 57889999999999999999998877643211111
Q ss_pred EEecCCCeeeec--cCCCceeeeCC---CCCcccEEEEcCCCCEEEEEecC-----------------------------
Q psy307 484 KFHPDEDKQHLD--IPVDMKYIADP---TMHSMPAVTSSPNNKWLACQSMD----------------------------- 529 (1019)
Q Consensus 484 ~~~p~~~~~~~~--~~~~~~~i~~~---~~~~i~~v~~spdg~~Lasgs~D----------------------------- 529 (1019)
.+...+...... ..........+ ....-..++++|++.++++...+
T Consensus 363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 111111100000 00000000111 01112357788887777775432
Q ss_pred --------------CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec
Q psy307 530 --------------NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA 595 (1019)
Q Consensus 530 --------------g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~ 595 (1019)
|.|..||+.++..... +... ..+....++.++.+++.|+.||.+++||..+++.+.++..
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~---~~~~---~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWS---VEHV---SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEE---EEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ccccccccCCCCCccEEEEEeCCCCcEEee---cCCC---CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 7899999988744322 2211 2223344566788899999999999999999999999875
Q ss_pred cCC-CEEEEEEcCCCCcEEEEE
Q psy307 596 HDG-VCISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 596 h~~-~V~sl~~sp~~~~~l~s~ 616 (1019)
..+ ...-+.|..+|..+++..
T Consensus 517 ~~~~~~~p~~y~~~G~~~v~~~ 538 (677)
T 1kb0_A 517 GTGVVAAPSTYMVDGRQYVSVA 538 (677)
T ss_dssp SSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCcccCCEEEEeCCEEEEEEe
Confidence 432 223445667775555543
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-07 Score=107.27 Aligned_cols=184 Identities=16% Similarity=0.140 Sum_probs=99.3
Q ss_pred CcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEE
Q psy307 405 AHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVK 484 (1019)
Q Consensus 405 ~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~ 484 (1019)
+..+++++.||.|+.||. .+++.+..+.. +.+.+..+..++..+++++.|+.|+.||..+|+.+..+......
T Consensus 9 ~~~v~~gs~dg~v~a~d~-~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~---- 81 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSK-RTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE---- 81 (369)
T ss_dssp TTEEEEEETTSEEEEEET-TTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHH----
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc----
Confidence 368999999999999999 55566666655 45555556667778888889999999999988876554322100
Q ss_pred EecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEc
Q psy307 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564 (1019)
Q Consensus 485 ~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fs 564 (1019)
.. ...+ .+. .+..+++++.|+.|+.||..++... ..+..+. ...++
T Consensus 82 -----------------~~-----~~sp--~~~-~~~~v~~g~~dg~v~a~D~~tG~~~---w~~~~~~------~~~~~ 127 (369)
T 2hz6_A 82 -----------------LV-----QASP--CRS-SDGILYMGKKQDIWYVIDLLTGEKQ---QTLSSAF------ADSLS 127 (369)
T ss_dssp -----------------HH-----TTCS--CC------CCCCEEEEEEEEECCC--------------------------
T ss_pred -----------------cc-----ccCc--eEe-cCCEEEEEeCCCEEEEEECCCCcEE---EEecCCC------ccccc
Confidence 00 0000 001 2446777888999999999987443 3333321 13456
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCC--CcEEEEEeCCCcEEEEeccceee
Q psy307 565 PDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE--PSKVVTAGWDAATAKVQDANIVK 632 (1019)
Q Consensus 565 pdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~--~~~l~s~s~Dg~I~iwwd~~i~k 632 (1019)
|++..|++++.||.|+.||..+|+.+..+..+. .....+.++. ...+++++.||.+..| |...++
T Consensus 128 p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~-d~~tG~ 194 (369)
T 2hz6_A 128 PSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTV-DSESGD 194 (369)
T ss_dssp -----EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEE-CTTTCC
T ss_pred ccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEE-ECCCCc
Confidence 788899999999999999999999877665322 1222333321 0357778889888554 444333
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00026 Score=74.36 Aligned_cols=176 Identities=11% Similarity=0.004 Sum_probs=113.4
Q ss_pred cEEEEEeCC--CcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE-EEcCCeEEEEECCCCceEEEEecCCceEE
Q psy307 406 HLLLSCSMD--CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS-AGYDRYLKLWDTESGECISRFTSRKVAYC 482 (1019)
Q Consensus 406 ~~L~sgs~D--g~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S-~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~ 482 (1019)
.+..+.+.+ +.|+.+|+ .+++.+....-... .........+..|.. .-.++.+.++|..+.+.+.++.......
T Consensus 32 ~LyestG~~g~S~v~~vD~-~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gw- 108 (243)
T 3mbr_X 32 HLYESTGETGRSSVRKVDL-ETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGW- 108 (243)
T ss_dssp EEEEEECCTTSCEEEEEET-TTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCC-
T ss_pred EEEEECCCCCCceEEEEEC-CCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCce-
Confidence 566666665 48999999 45555555433221 222222233455544 4468899999999999998887543211
Q ss_pred EEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEE
Q psy307 483 VKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562 (1019)
Q Consensus 483 v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~ 562 (1019)
.+.++++.|+++..+++|.++|..+......+..-.....-..++.+.
T Consensus 109 --------------------------------glt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 109 --------------------------------ALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE 156 (243)
T ss_dssp --------------------------------EEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred --------------------------------EEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence 223456667777778999999998764433333222111113455666
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc-------------CCCEEEEEEcCCCCcEEEEEe
Q psy307 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH-------------DGVCISTLWHPHEPSKVVTAG 617 (1019)
Q Consensus 563 fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h-------------~~~V~sl~~sp~~~~~l~s~s 617 (1019)
|. +|+..+..-.+..|.+.|.++++.+..+... ....++++|+|++..+++||-
T Consensus 157 ~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 157 WV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred Ee-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 65 7776655556779999999999998887622 136799999998876666664
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00045 Score=76.18 Aligned_cols=237 Identities=11% Similarity=0.064 Sum_probs=140.0
Q ss_pred eccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecc--------------------cCccEeEEEEcC-
Q psy307 331 WEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG--------------------HRQAVRDICFNN- 389 (1019)
Q Consensus 331 l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g--------------------h~~~V~~i~fsp- 389 (1019)
+.+.-....+++|.++ +.+++++..++.|..|+..... +..+.. ....+..+++.+
T Consensus 14 ~~g~~~~p~~i~~d~~-g~~l~v~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~ 90 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDST-NKGFYTSVQDGRVIKYEGPNSG--FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ 90 (322)
T ss_dssp EECSSSCCCCEECCTT-CSSEEEECTTSEEEEECCTTTC--EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT
T ss_pred cCCccCCceEEEEcCC-CCEEEEEcCCCeEEEECCCCCc--eEEEecccccccccccccccchhccccCCCCceEEEcCC
Confidence 3343345667889986 7778888899999999874322 222210 012456677765
Q ss_pred CCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEc----c-ccccEeEEEEec-CCCEEEEEEc-------
Q psy307 390 TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYY----G-HRQAVRDICFNN-TGTNFISAGY------- 456 (1019)
Q Consensus 390 dg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~----~-H~~~V~sl~fsp-dg~~l~S~s~------- 456 (1019)
++ .|+.+...+.|..+|.. ++. +..+. + .......+++.+ +|+.+++...
T Consensus 91 ~g---------------~l~v~d~~~~i~~~d~~-~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~ 153 (322)
T 2fp8_A 91 NN---------------QLYIVDCYYHLSVVGSE-GGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRG 153 (322)
T ss_dssp TT---------------EEEEEETTTEEEEECTT-CEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTC
T ss_pred CC---------------cEEEEECCCCEEEEeCC-CCE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccc
Confidence 44 35555455557788763 222 22221 1 123467889999 8876665432
Q ss_pred ----------CCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE
Q psy307 457 ----------DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ 526 (1019)
Q Consensus 457 ----------Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg 526 (1019)
++.|..||..+++....... ......++++|+|+.|.++
T Consensus 154 ~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-------------------------------~~~p~gia~~~dg~~lyv~ 202 (322)
T 2fp8_A 154 VQQIMDTSDKTGRLIKYDPSTKETTLLLKE-------------------------------LHVPGGAEVSADSSFVLVA 202 (322)
T ss_dssp HHHHHHHTCCCEEEEEEETTTTEEEEEEEE-------------------------------ESCCCEEEECTTSSEEEEE
T ss_pred cceehcccCCCceEEEEeCCCCEEEEeccC-------------------------------CccCcceEECCCCCEEEEE
Confidence 25677777665543221110 0123468889999866555
Q ss_pred -ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCceeeeeec
Q psy307 527 -SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA----------DGKCYIWDWKTTKLFKKWKA 595 (1019)
Q Consensus 527 -s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~----------DG~I~IWDl~t~~~l~~l~~ 595 (1019)
+..+.|.+|++..... .....+... .+ ...++++++|++.++... .+.|..+|. .++.+..+..
T Consensus 203 d~~~~~I~~~~~~~~~~-~~~~~~~~~--~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~ 277 (322)
T 2fp8_A 203 EFLSHQIVKYWLEGPKK-GTAEVLVKI--PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPL 277 (322)
T ss_dssp EGGGTEEEEEESSSTTT-TCEEEEEEC--SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEEC
T ss_pred eCCCCeEEEEECCCCcC-CccceEEeC--CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEEC
Confidence 5678999999875321 111222211 13 678999999997666544 467888886 4777777754
Q ss_pred cC----CCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 596 HD----GVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 596 h~----~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.. ..+.++++. ++ .++++....+.|.++
T Consensus 278 ~~g~~~~~~~~~~~~-~g-~L~v~~~~~~~i~~~ 309 (322)
T 2fp8_A 278 PPPFAGEHFEQIQEH-DG-LLYIGTLFHGSVGIL 309 (322)
T ss_dssp CTTTTTSCCCEEEEE-TT-EEEEECSSCSEEEEE
T ss_pred CCCCccccceEEEEe-CC-EEEEeecCCCceEEE
Confidence 43 245666663 33 566665566677554
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=3.5e-05 Score=94.61 Aligned_cols=249 Identities=8% Similarity=0.009 Sum_probs=148.5
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEeccc-C----ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC------CCc
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYGH-R----QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM------DCR 416 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh-~----~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~------Dg~ 416 (1019)
+..|+.++.|+.|..+|.. +++.+..+..+ . ..+..--...+ ..++.++. +|.
T Consensus 128 ~~~v~v~~~dg~l~alD~~-tG~~~W~~~~~~~~~~~~~~~~~p~v~~---------------~~v~v~~~~~~~~~~g~ 191 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAA-TGKEVWHQNTFEGQKGSLTITGAPRVFK---------------GKVIIGNGGAEYGVRGY 191 (677)
T ss_dssp TTEEEEECTTSEEEEEETT-TCCEEEEEETTTTCCSSCBCCSCCEEET---------------TEEEECCBCTTTCCBCE
T ss_pred CCEEEEEcCCCEEEEEECC-CCCEEeeecCCcCcCcCcccccCcEEEC---------------CEEEEEecccccCCCCE
Confidence 4578888999999999994 45555555443 1 01111000001 34455443 799
Q ss_pred EEEEEccCCCeEEEEEcccc--------------------------------ccEeEEEEecCCCEEEEEEcCC------
Q psy307 417 VKLWEVYKEHRCVRTYYGHR--------------------------------QAVRDICFNNTGTNFISAGYDR------ 458 (1019)
Q Consensus 417 I~IWDl~~~~~~~~~l~~H~--------------------------------~~V~sl~fspdg~~l~S~s~Dg------ 458 (1019)
|+.||.. +++.+..+.... .....+++++++..++.++.++
T Consensus 192 v~a~D~~-tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~ 270 (677)
T 1kb0_A 192 ITAYDAE-TGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHK 270 (677)
T ss_dssp EEEEETT-TCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHH
T ss_pred EEEEECC-CCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCC
Confidence 9999994 444444443211 1123578899988888877664
Q ss_pred -------------eEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC---CE
Q psy307 459 -------------YLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN---KW 522 (1019)
Q Consensus 459 -------------~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg---~~ 522 (1019)
.|..+|..+|+.+..+...... .| + .+ .......+....+| ..
T Consensus 271 ~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d---~w---------d--------~~-~~~~p~l~~~~~dG~~~~~ 329 (677)
T 1kb0_A 271 VRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGD---NW---------D--------YT-STQPMILADIKIAGKPRKV 329 (677)
T ss_dssp HHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC---CS---------C--------CC-CCSCCEEEEEEETTEEEEE
T ss_pred CCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCc---cc---------c--------cc-cCCCcEEEecccCCcEeeE
Confidence 5999999999988777642100 00 0 00 00111122223466 67
Q ss_pred EEEEecCCeEEEEEccCcccccceeEEecc------ccccce------------------------EEEEEcCCCCEEEE
Q psy307 523 LACQSMDNKILIFSALNRFKLNRKKTFEGH------MVAGYA------------------------CSLDFSPDMSYLIS 572 (1019)
Q Consensus 523 Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh------~~~~~V------------------------~~v~fspdg~~Las 572 (1019)
++.++.+|.|+++|..++..+.....-... ....++ ..++++|++.++++
T Consensus 330 l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv 409 (677)
T 1kb0_A 330 ILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYL 409 (677)
T ss_dssp EEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEE
T ss_pred EEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEE
Confidence 889999999999999887543222100000 000000 14688999888877
Q ss_pred EeC-------------------------------------------CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCC
Q psy307 573 GDA-------------------------------------------DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609 (1019)
Q Consensus 573 gs~-------------------------------------------DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~ 609 (1019)
... .|.|..||+.+++.+..++.. .++.+..+...+
T Consensus 410 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g 488 (677)
T 1kb0_A 410 PAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAG 488 (677)
T ss_dssp EEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETT
T ss_pred eChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcceEeCC
Confidence 543 278999999999998877643 334444555666
Q ss_pred CcEEEEEeCCCcEEEEeccceeeeeeec
Q psy307 610 PSKVVTAGWDAATAKVQDANIVKIAVEM 637 (1019)
Q Consensus 610 ~~~l~s~s~Dg~I~iwwd~~i~ki~~e~ 637 (1019)
.+++.++.||.++. +|...++++...
T Consensus 489 -~~v~~g~~dg~l~a-~D~~tG~~lw~~ 514 (677)
T 1kb0_A 489 -NVVFQGTADGRLVA-YHAATGEKLWEA 514 (677)
T ss_dssp -TEEEEECTTSEEEE-EETTTCCEEEEE
T ss_pred -CEEEEECCCCcEEE-EECCCCceeeee
Confidence 47888899999965 466555555443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00011 Score=90.36 Aligned_cols=251 Identities=10% Similarity=0.030 Sum_probs=146.8
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEecc--cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe------CCCcEEE
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYG--HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS------MDCRVKL 419 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g--h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs------~Dg~I~I 419 (1019)
+..|+.++.|+.|..+|..+ ++.+..+.. +......+..+| .+ .+ ..++.++ .+|.|..
T Consensus 121 ~g~v~v~~~dg~l~AlDa~T-G~~~W~~~~~~~~~~~~~~~~sP-------~v----~~-g~v~vg~~~~~~~~~g~v~a 187 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKT-GQRAWSVDTRADHKRSYTITGAP-------RV----VN-GKVVIGNGGAEFGVRGYVTA 187 (689)
T ss_dssp TTEEEEECTTSEEEEEETTT-CCEEEEEECCSCTTSCCBCCSCC-------EE----ET-TEEEECCBCTTTCCBCEEEE
T ss_pred CCEEEEEccCCEEEEEECCC-CCEeeeecCcCCCCCCccccCCc-------EE----EC-CEEEEEeCCCccCCCCEEEE
Confidence 34788889999999999944 444544432 111111111111 00 01 2344443 3789999
Q ss_pred EEccCCCeEEEEEcc-------------------------------ccccEeEEEEecCCCEEEEEEcCCe---------
Q psy307 420 WEVYKEHRCVRTYYG-------------------------------HRQAVRDICFNNTGTNFISAGYDRY--------- 459 (1019)
Q Consensus 420 WDl~~~~~~~~~l~~-------------------------------H~~~V~sl~fspdg~~l~S~s~Dg~--------- 459 (1019)
||.. +++.+..+.. +......++++|++..++.++.++.
T Consensus 188 ~D~~-tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~ 266 (689)
T 1yiq_A 188 YDAE-TGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQ 266 (689)
T ss_dssp EETT-TCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHT
T ss_pred EECC-CCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCC
Confidence 9994 4444444321 1111235789998889988887764
Q ss_pred ----------EEEEECCCCceEEEEecCC-ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCC---EEEE
Q psy307 460 ----------LKLWDTESGECISRFTSRK-VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK---WLAC 525 (1019)
Q Consensus 460 ----------I~lWDl~t~~~i~~~~~~~-~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~---~Las 525 (1019)
|..||..+|+.+..+.... .... -+ ....+.......+|+ .++.
T Consensus 267 ~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd----~~------------------~~~~~~l~d~~~~G~~~~~v~~ 324 (689)
T 1yiq_A 267 AKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWD----YT------------------ATQHMILAELPIDGKPRKVLMQ 324 (689)
T ss_dssp TCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSC----CC------------------CCSCEEEEEEEETTEEEEEEEE
T ss_pred CCCCceeeeeEEEEEccCCceeEeeecCCccccc----cc------------------CCCCcEEEeeccCCcEEEEEEE
Confidence 9999999999888776421 0000 00 000011111222454 7888
Q ss_pred EecCCeEEEEEccCcccccceeE--------Ee-----------------cc---------ccccceEEEEEcCCCCEEE
Q psy307 526 QSMDNKILIFSALNRFKLNRKKT--------FE-----------------GH---------MVAGYACSLDFSPDMSYLI 571 (1019)
Q Consensus 526 gs~Dg~I~iwd~~~~~~~~~~~~--------l~-----------------gh---------~~~~~V~~v~fspdg~~La 571 (1019)
++.+|.++++|..++..+..... +. .. .....-..++|+|+..+++
T Consensus 325 ~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~y 404 (689)
T 1yiq_A 325 APKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVY 404 (689)
T ss_dssp CCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEE
T ss_pred ECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEE
Confidence 99999999999988754311100 00 00 0000011268889888777
Q ss_pred EEeC---------------------------------------------CCeEEEEeCCCCceeeeeeccCCCEEEEEEc
Q psy307 572 SGDA---------------------------------------------DGKCYIWDWKTTKLFKKWKAHDGVCISTLWH 606 (1019)
Q Consensus 572 sgs~---------------------------------------------DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~s 606 (1019)
+... +|.|..||+.|++.+..++.+.. +....+.
T Consensus 405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~ 483 (689)
T 1yiq_A 405 IPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTLS 483 (689)
T ss_dssp EEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEEE
T ss_pred EeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccce
Confidence 6532 37899999999999888776543 3333445
Q ss_pred CCCCcEEEEEeCCCcEEEEeccceeeeeeec
Q psy307 607 PHEPSKVVTAGWDAATAKVQDANIVKIAVEM 637 (1019)
Q Consensus 607 p~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~ 637 (1019)
..+ .+++.++.||.++. ||...++++-..
T Consensus 484 tag-glvf~gt~dg~l~a-~D~~tG~~lw~~ 512 (689)
T 1yiq_A 484 TAG-NLVFEGSADGRVIA-YAADTGEKLWEQ 512 (689)
T ss_dssp ETT-TEEEEECTTSEEEE-EETTTCCEEEEE
T ss_pred ECC-CEEEEECCCCcEEE-EECCCCccceee
Confidence 555 48899999999965 566666665443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.23 E-value=3e-05 Score=91.47 Aligned_cols=258 Identities=8% Similarity=0.050 Sum_probs=140.3
Q ss_pred CCCcEEEEeeCCCeEEEEecCCCcEEEEEecc-cCccEeEEEE-c-CCCCceeEEEee---cCCCCcEEEE-EeCCCcEE
Q psy307 346 KSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG-HRQAVRDICF-N-NTGTNFISAIRW---FPKSAHLLLS-CSMDCRVK 418 (1019)
Q Consensus 346 d~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g-h~~~V~~i~f-s-pdg~~~vs~i~~---~p~~~~~L~s-gs~Dg~I~ 418 (1019)
|+..++++...++.|.+-|+ ...++...+.- .......+++ + |++.++..+..+ .|+++..|.. .-.++.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl-~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRC-DVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEET-TTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEEC-CCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 43444555556778999999 55566664321 2245778887 4 787533222211 1111111111 12356788
Q ss_pred EEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCC---------------eEEEEECCCCceEEEEecCCceEEE
Q psy307 419 LWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDR---------------YLKLWDTESGECISRFTSRKVAYCV 483 (1019)
Q Consensus 419 IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg---------------~I~lWDl~t~~~i~~~~~~~~v~~v 483 (1019)
+.|.. +.+....+.--. .-..++++|+|+++++++++. .|.+.|...... ....++... +
T Consensus 179 vID~~-t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~--~v~~Gk~~~-i 253 (595)
T 1fwx_A 179 AVDAD-KWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK--AIAAGDYQE-L 253 (595)
T ss_dssp EEETT-TTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH--HHHHTCSEE-E
T ss_pred EEECC-CCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE--eccCCCeeE-E
Confidence 99984 445555443211 345568999999999888764 355555422110 000000000 0
Q ss_pred EEecCCCeeeeccCC--C---ceeeeCCCCCcccEEEEcCCCCEEEEEe-cCCeEEEEEccCccc-----cccee-EEec
Q psy307 484 KFHPDEDKQHLDIPV--D---MKYIADPTMHSMPAVTSSPNNKWLACQS-MDNKILIFSALNRFK-----LNRKK-TFEG 551 (1019)
Q Consensus 484 ~~~p~~~~~~~~~~~--~---~~~i~~~~~~~i~~v~~spdg~~Lasgs-~Dg~I~iwd~~~~~~-----~~~~~-~l~g 551 (1019)
+...+++... . ..++. -.....++.++|||+++++++ .+++|.++|+.+... +.... ....
T Consensus 254 -----~~V~VID~~~~~~~~~~~~Ip--vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 254 -----NGVKVVDGRKEASSLFTRYIP--IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp -----TTEEEEECSGGGCCSSEEEEE--EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred -----CcEEEEeCcccCCceeEEEEe--cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 1111222221 1 11111 123456789999999887765 678999999985421 00000 1111
Q ss_pred cccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCC----------CceeeeeeccCCCE-----EEEEEcCCCCcEEEEE
Q psy307 552 HMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKT----------TKLFKKWKAHDGVC-----ISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 552 h~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t----------~~~l~~l~~h~~~V-----~sl~~sp~~~~~l~s~ 616 (1019)
-..+.....++|+|+|...++.-.|+.|.+||+.+ .+.+.++..|-.+- .++..+|||. +|+++
T Consensus 327 v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk-~l~~~ 405 (595)
T 1fwx_A 327 PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATND-WLVCL 405 (595)
T ss_dssp CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSS-EEEEE
T ss_pred cCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCC-EEEEc
Confidence 11223477899999994445666799999999987 56777777665432 1224578885 45444
Q ss_pred e
Q psy307 617 G 617 (1019)
Q Consensus 617 s 617 (1019)
.
T Consensus 406 N 406 (595)
T 1fwx_A 406 S 406 (595)
T ss_dssp E
T ss_pred C
Confidence 3
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.19 E-value=6.7e-05 Score=82.53 Aligned_cols=255 Identities=12% Similarity=0.054 Sum_probs=147.4
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
..+.+|+.+ .+..++.+..++ ... +.+..+..+...+.++...++ +. |+.++.+ |..+|. . ++.+
T Consensus 26 ~~d~~g~l~-v~t~~~~l~~~d-~~g-------~~~~~~~~~~~~~~~~~~~~~-g~-l~v~t~~--l~~~d~-~-g~~~ 90 (330)
T 3hxj_A 26 ILAKNGTIY-LGSSNKNLYAIN-TDG-------SVKWFFKSGEIIECRPSIGKD-GT-IYFGSDK--VYAINP-D-GTEK 90 (330)
T ss_dssp EECTTSCEE-CSSTTTTTEEEC-TTS-------CEEESSCGGGEEEECCEETTT-TE-ECCSSCE--EEEECC-C-GGGG
T ss_pred eEccCCeEE-EEcCCCEEEEEC-CCC-------cEEEEEecCCCcccceEEecC-Cc-EEEecCc--EEEECC-C-CcEE
Confidence 345566654 444667777776 321 122222333445566776654 43 5555544 777775 2 2222
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
..+...........+. ...|..++.++.|..+|.. +........+...+.++...+++. ++
T Consensus 91 ~~~~~~~~~~~~~~~~----------------~~~l~v~t~~~~l~~~d~~--g~~~~~~~~~~~~~~~~~~~~~g~-l~ 151 (330)
T 3hxj_A 91 WRFDTKKAIVSDFTIF----------------EDILYVTSMDGHLYAINTD--GTEKWRFKTKKAIYATPIVSEDGT-IY 151 (330)
T ss_dssp GGSCC-----CCEEEE----------------TTEEEEECTTSEEEEECTT--SCEEEEEECSSCCCSCCEECTTSC-EE
T ss_pred EEEECCCCcccCceEE----------------CCEEEEEecCCEEEEEcCC--CCEEEEEcCCCceeeeeEEcCCCE-EE
Confidence 2222221111122221 2467888889999999984 555555555555667777777776 56
Q ss_pred EEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeE
Q psy307 453 SAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKI 532 (1019)
Q Consensus 453 S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I 532 (1019)
.++.++.|..+|.. ++.+..+.... ..+.++...+++..+ +++ +.|
T Consensus 152 vgt~~~~l~~~d~~-g~~~~~~~~~~------------------------------~~~~~~~~d~~g~l~-v~t--~~l 197 (330)
T 3hxj_A 152 VGSNDNYLYAINPD-GTEKWRFKTND------------------------------AITSAASIGKDGTIY-FGS--DKV 197 (330)
T ss_dssp EECTTSEEEEECTT-SCEEEEEECSS------------------------------CCCSCCEECTTCCEE-EES--SSE
T ss_pred EEcCCCEEEEECCC-CCEeEEEecCC------------------------------CceeeeEEcCCCEEE-EEe--CEE
Confidence 67788999999988 77665544221 123345556667644 444 888
Q ss_pred EEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcE
Q psy307 533 LIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSK 612 (1019)
Q Consensus 533 ~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~ 612 (1019)
..|| .++... ..+.... ..+.++..+++|. |..++.++.|..+| .+++.+..+......+.++...+++ .
T Consensus 198 ~~~d-~~g~~~---~~~~~~~--~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g--~ 267 (330)
T 3hxj_A 198 YAIN-PDGTEK---WNFYAGY--WTVTRPAISEDGT-IYVTSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTD--T 267 (330)
T ss_dssp EEEC-TTSCEE---EEECCSS--CCCSCCEECTTSC-EEEEETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTS--C
T ss_pred EEEC-CCCcEE---EEEccCC--cceeceEECCCCe-EEEEcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCC--e
Confidence 9998 444222 2222221 3466778888876 44566677888888 4666666665544444455555555 5
Q ss_pred EEEEeCCCcEEEE
Q psy307 613 VVTAGWDAATAKV 625 (1019)
Q Consensus 613 l~s~s~Dg~I~iw 625 (1019)
|..++.+|.+..+
T Consensus 268 l~v~t~~ggl~~~ 280 (330)
T 3hxj_A 268 IYFGSYDGHLYAI 280 (330)
T ss_dssp EEEECTTCEEEEE
T ss_pred EEEecCCCCEEEE
Confidence 7777888778666
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.19 E-value=0.0011 Score=72.72 Aligned_cols=247 Identities=7% Similarity=-0.049 Sum_probs=134.4
Q ss_pred ccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCC
Q psy307 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKS 404 (1019)
Q Consensus 325 ~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~ 404 (1019)
.+.+..+..+ .....++|+++ +.++++...++.|..||.... ....+. .......+++.++|
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~-g~lyv~d~~~~~I~~~d~~g~--~~~~~~-~~~~p~gia~~~dG------------- 83 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPD-GTIFVTNHEVGEIVSITPDGN--QQIHAT-VEGKVSGLAFTSNG------------- 83 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTT-SCEEEEETTTTEEEEECTTCC--EEEEEE-CSSEEEEEEECTTS-------------
T ss_pred ceEeEeCCCC-CCcceEEECCC-CCEEEEeCCCCeEEEECCCCc--eEEEEe-CCCCceeEEEcCCC-------------
Confidence 3455555433 46788999995 677777778899999997432 222222 23457778888877
Q ss_pred CcEEEEEeCCC--cEEEEEccCCCeEEEEEc-cccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceE
Q psy307 405 AHLLLSCSMDC--RVKLWEVYKEHRCVRTYY-GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY 481 (1019)
Q Consensus 405 ~~~L~sgs~Dg--~I~IWDl~~~~~~~~~l~-~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~ 481 (1019)
+++++..... .|..+|.. .+....... ........++..+++..+++...++.|..+|..++........
T Consensus 84 -~l~vad~~~~~~~v~~~d~~-~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~----- 156 (306)
T 2p4o_A 84 -DLVATGWNADSIPVVSLVKS-DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH----- 156 (306)
T ss_dssp -CEEEEEECTTSCEEEEEECT-TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----
T ss_pred -cEEEEeccCCcceEEEEcCC-CCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEEC-----
Confidence 4444443322 35556653 333222211 1122234455555444344444578888888765431111000
Q ss_pred EEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEE-EEecCCeEEEEEccCcccccceeEEeccccccceEE
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLA-CQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~La-sgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~ 560 (1019)
+... .............+ +|+++.|. +-+..+.|..|++.....+.....+... .....
T Consensus 157 -----~~~~----------~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~---~~P~g 216 (306)
T 2p4o_A 157 -----PMLA----------RSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ---TNIDD 216 (306)
T ss_dssp -----GGGS----------CSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES---CCCSS
T ss_pred -----Cccc----------cccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc---CCCCC
Confidence 0000 00000001112234 77876554 4456789999998742111112222111 23456
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceee--eeeccCCCEEEEEEc---CCCCcEEEEEe
Q psy307 561 LDFSPDMSYLISGDADGKCYIWDWKTTKLFK--KWKAHDGVCISTLWH---PHEPSKVVTAG 617 (1019)
Q Consensus 561 v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~--~l~~h~~~V~sl~~s---p~~~~~l~s~s 617 (1019)
++++++|++.++....+.|.++|.. ++... .+...-...++++|. |++..++++.+
T Consensus 217 i~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 217 FAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred eEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 8999999987777778899999975 65532 333333468899998 77755555544
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.18 E-value=0.001 Score=74.86 Aligned_cols=254 Identities=7% Similarity=-0.042 Sum_probs=138.7
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEecccC---------ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEE
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYGHR---------QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVK 418 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~---------~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~ 418 (1019)
+..++.++.++.|..+|..+ ++.+..+.... ..+.+.... ....++.++.++.|.
T Consensus 53 ~~~v~~~~~~g~v~a~d~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~v~v~~~~g~l~ 116 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADD-GKEIWSVSLAEKDGWFSKEPALLSGGVTV---------------SGGHVYIGSEKAQVY 116 (376)
T ss_dssp TTEEEEECTTSEEEEEETTT-CCEEEEEECCC---CCSCCCCCEEEEEEE---------------ETTEEEEEETTSEEE
T ss_pred CCEEEEEcCCCeEEEEEccC-CceeeeecCccccccccccCcccccCceE---------------eCCEEEEEcCCCEEE
Confidence 45677888899999999844 44444433221 112111111 124788889999999
Q ss_pred EEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceE------EEEEe------
Q psy307 419 LWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY------CVKFH------ 486 (1019)
Q Consensus 419 IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~------~v~~~------ 486 (1019)
.+|.. +++.................. +..++.++.++.|..+|..+|+.+..+.....+. .....
T Consensus 117 a~d~~-tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~ 193 (376)
T 3q7m_A 117 ALNTS-DGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVV 193 (376)
T ss_dssp EEETT-TCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEE
T ss_pred EEECC-CCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEE
Confidence 99984 444444443332222222222 4578888899999999999999888776543221 11111
Q ss_pred --cCCCeeeeccCCCcee-eeCCCC--C-----cccEEEEcC--CCCEEEEEecCCeEEEEEccCcccccceeEEecccc
Q psy307 487 --PDEDKQHLDIPVDMKY-IADPTM--H-----SMPAVTSSP--NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMV 554 (1019)
Q Consensus 487 --p~~~~~~~~~~~~~~~-i~~~~~--~-----~i~~v~~sp--dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~ 554 (1019)
.++....++....... ...... . .+..+...| .+..+++++.++.+..+|..++... .....
T Consensus 194 g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~---w~~~~--- 267 (376)
T 3q7m_A 194 GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIM---WKREL--- 267 (376)
T ss_dssp CCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEE---EEECC---
T ss_pred EcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEE---eeccC---
Confidence 0111122222111111 000000 0 000000111 2466778888999999999877433 22211
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec-cCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeee
Q psy307 555 AGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA-HDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKI 633 (1019)
Q Consensus 555 ~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~-h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki 633 (1019)
.....+.. ++..|+.++.+|.|..+|..+++.+..... ....+...... + ..|+.++.+|.+..+ +...+++
T Consensus 268 -~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~-~~l~v~~~~g~l~~~-d~~tG~~ 340 (376)
T 3q7m_A 268 -GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--N-GNLVVGDSEGYLHWI-NVEDGRF 340 (376)
T ss_dssp -CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--T-TEEEEECTTSEEEEE-ETTTCCE
T ss_pred -CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--C-CEEEEEeCCCeEEEE-ECCCCcE
Confidence 12333443 466788888899999999999998776652 22222222222 3 368888888888554 4444443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00038 Score=74.56 Aligned_cols=214 Identities=8% Similarity=0.011 Sum_probs=131.5
Q ss_pred cceeeeccCCC--CeEEEEEcCCCCcEEEEeeC--CCeEEEEecCCCcEEEEEecc-cCccEeEEEEcCCCCceeEEEee
Q psy307 326 TQVHTWEGHTK--GISAIRWFPKSAHLLLSCSM--DCRVKLWEVYKERRCVRTYYG-HRQAVRDICFNNTGTNFISAIRW 400 (1019)
Q Consensus 326 ~~i~~l~gH~~--~V~~i~fspd~g~lLaSgs~--Dg~I~IWdl~~~~~~~~~~~g-h~~~V~~i~fspdg~~~vs~i~~ 400 (1019)
+.+.++. |.. ....+.|+|+ +.+.++.+. ++.|.+.|+. .++.+..+.- .......+++. +
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~-tg~v~~~i~l~~~~fgeGi~~~--g--------- 75 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQ-TGKVENIHKMDDSYFGEGLTLL--N--------- 75 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECST-TEEEEEECSTTTCEEEEEETT-TCCEEEEEECCTTCCEEEEEEE--T---------
T ss_pred eEEEEEE-CCCCCCcccEEEeCC-CeEEEECCCCCCCEEEEEECC-CCCEEEEEecCCCcceEEEEEe--C---------
Confidence 4555553 443 3579999996 555555543 6899999994 4555555431 11111223332 2
Q ss_pred cCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCce
Q psy307 401 FPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVA 480 (1019)
Q Consensus 401 ~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v 480 (1019)
..+.++.-.++.+.++|. .+.+.+..+..-... ...+++||+.++.+..+++|.++|..+.+.+..+......
T Consensus 76 ----~~lyv~t~~~~~v~viD~-~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~ 148 (266)
T 2iwa_A 76 ----EKLYQVVWLKNIGFIYDR-RTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNG 148 (266)
T ss_dssp ----TEEEEEETTCSEEEEEET-TTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETT
T ss_pred ----CEEEEEEecCCEEEEEEC-CCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCC
Confidence 245556667899999999 456666666432111 2245668887777777899999999999888777642100
Q ss_pred EEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEecc--------
Q psy307 481 YCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGH-------- 552 (1019)
Q Consensus 481 ~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh-------- 552 (1019)
. .......+.+. +|..++....++.|.+.|..++.....+.. .+.
T Consensus 149 ~-------------------------p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~-~g~~~~~~~~~ 201 (266)
T 2iwa_A 149 H-------------------------RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILL-PNLRKKLIDEG 201 (266)
T ss_dssp E-------------------------ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEEC-HHHHHHHHHTT
T ss_pred c-------------------------ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEEC-CCccccccccc
Confidence 0 00112344555 565555555688999999998754322221 111
Q ss_pred -ccccceEEEEEcCCCCE-EEEEeCCCeEEEEeCCCC
Q psy307 553 -MVAGYACSLDFSPDMSY-LISGDADGKCYIWDWKTT 587 (1019)
Q Consensus 553 -~~~~~V~~v~fspdg~~-Lasgs~DG~I~IWDl~t~ 587 (1019)
........++|+|+++. ++++...++|.+.++...
T Consensus 202 ~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 202 FRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp CTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred ccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 11134689999999864 556667888988887654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00058 Score=77.91 Aligned_cols=193 Identities=11% Similarity=0.017 Sum_probs=123.1
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCC---CeEEEEEc------c-ccccEeEEEEecCCCEEEEEEcC------CeEEEEEC
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYKE---HRCVRTYY------G-HRQAVRDICFNNTGTNFISAGYD------RYLKLWDT 465 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~~---~~~~~~l~------~-H~~~V~sl~fspdg~~l~S~s~D------g~I~lWDl 465 (1019)
++...++++|..++.|.++|+.+. .+...++. . -...-..+..+|+| .++++..+ +.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 444567778888999999998433 25555552 1 11245567888999 77777666 78999999
Q ss_pred CCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEe------------------
Q psy307 466 ESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQS------------------ 527 (1019)
Q Consensus 466 ~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs------------------ 527 (1019)
.+++.+.++...... ..-...+.|+|+++.+++..
T Consensus 172 ~T~~v~~~~~~~~~~---------------------------~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~ 224 (462)
T 2ece_A 172 YSFEPLGKWEIDRGD---------------------------QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKD 224 (462)
T ss_dssp TTCCEEEECCSBCTT---------------------------CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHH
T ss_pred CCCeEEEEEccCCCC---------------------------ccccceEEECCCCCEEEEccCcCccccccccchhhhhh
Confidence 999998887643210 01112466788888777764
Q ss_pred -cCCeEEEEEccCcccccceeEEeccccccceEEEEE--cCCCCEEEEEe------CCCeEEEEeCCCCce--eeee--e
Q psy307 528 -MDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDF--SPDMSYLISGD------ADGKCYIWDWKTTKL--FKKW--K 594 (1019)
Q Consensus 528 -~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~f--spdg~~Lasgs------~DG~I~IWDl~t~~~--l~~l--~ 594 (1019)
.+++|.+||+.++. .+.++.-.........+.| +|+|+++.+++ .+++|.+|....++. .+.+ .
T Consensus 225 ~~~d~V~v~D~~~~k---~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~ 301 (462)
T 2ece_A 225 RYGNRIHFWDLRKRK---RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIP 301 (462)
T ss_dssp HSCCEEEEEETTTTE---EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEEC
T ss_pred ccCCEEEEEECCCCc---EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCC
Confidence 36899999998752 2334433211123445555 99999988777 456888776554321 1111 1
Q ss_pred cc----------------CCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 595 AH----------------DGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 595 ~h----------------~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.. ......+.++|++..+.++.-..+.|.++
T Consensus 302 ~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~Vavf 348 (462)
T 2ece_A 302 AEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQY 348 (462)
T ss_dssp CEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEE
T ss_pred CccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEE
Confidence 10 23467899999996555666666777655
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0027 Score=67.70 Aligned_cols=188 Identities=8% Similarity=-0.062 Sum_probs=107.7
Q ss_pred eecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEE-EcCCeEEEEECCCCceEEEEecC
Q psy307 399 RWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISA-GYDRYLKLWDTESGECISRFTSR 477 (1019)
Q Consensus 399 ~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~-s~Dg~I~lWDl~t~~~i~~~~~~ 477 (1019)
+|.+..+.++++...++.|..+++.. ...............++++++++..++.+ ...+.|.++++...........
T Consensus 42 ~~d~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~- 119 (267)
T 1npe_A 42 AFDCVDKVVYWTDISEPSIGRASLHG-GEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT- 119 (267)
T ss_dssp EEETTTTEEEEEETTTTEEEEEESSS-CCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-
T ss_pred EEecCCCEEEEEECCCCEEEEEecCC-CCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEEC-
Confidence 33333335666667788999999843 33333333333567889999976665544 4567888888764322111110
Q ss_pred CceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec---CCeEEEEEccCcccccceeEEecccc
Q psy307 478 KVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM---DNKILIFSALNRFKLNRKKTFEGHMV 554 (1019)
Q Consensus 478 ~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~---Dg~I~iwd~~~~~~~~~~~~l~gh~~ 554 (1019)
.......++++|++..|..+.. .+.|..+++.... ...+.. ..
T Consensus 120 -----------------------------~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~----~~~~~~-~~ 165 (267)
T 1npe_A 120 -----------------------------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN----RRILAQ-DN 165 (267)
T ss_dssp -----------------------------SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC----CEEEEC-TT
T ss_pred -----------------------------CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC----cEEEEE-CC
Confidence 0122356777886555544443 4688888876432 122211 11
Q ss_pred ccceEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 555 AGYACSLDFSPDMSYLISGD-ADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 555 ~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
......++++|++..|..++ ..+.|.++|.........+.. .....+++.. ++.++++....+.|.++
T Consensus 166 ~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~ 234 (267)
T 1npe_A 166 LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAM 234 (267)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEE
Confidence 14578899999877665554 567999999976544333332 2234566553 43455555455666554
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00058 Score=80.53 Aligned_cols=210 Identities=9% Similarity=0.018 Sum_probs=135.1
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEcc-ccccEeEEEE-e-cCCCEEEEEE------------------cCCeEEEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYG-HRQAVRDICF-N-NTGTNFISAG------------------YDRYLKLWD 464 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~-H~~~V~sl~f-s-pdg~~l~S~s------------------~Dg~I~lWD 464 (1019)
.++++...++.|.+.|+ ...++...+.- ....+..+++ + |+++++++++ +++.+.++|
T Consensus 103 ~lfVnd~~~~rVavIdl-~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID 181 (595)
T 1fwx_A 103 FLFMNDKANTRVARVRC-DVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVD 181 (595)
T ss_dssp EEEEEETTTTEEEEEET-TTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEEC-CCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEE
Confidence 34444455677999999 55566664432 2245778887 5 8999988885 356899999
Q ss_pred CCCCceEEEEecCCceEEEEEecCCCeeeeccCCCce--eeeCCCCCcccEE---------EEcCCCCEEEEEecCCeEE
Q psy307 465 TESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMK--YIADPTMHSMPAV---------TSSPNNKWLACQSMDNKIL 533 (1019)
Q Consensus 465 l~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~--~i~~~~~~~i~~v---------~~spdg~~Lasgs~Dg~I~ 533 (1019)
..+.+.+.++.....+..++++|++....+....... .+..........+ .+.++|++... +.|.
T Consensus 182 ~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i----~~V~ 257 (595)
T 1fwx_A 182 ADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL----NGVK 257 (595)
T ss_dssp TTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE----TTEE
T ss_pred CCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE----CcEE
Confidence 9999999998876677888899988776663322111 0000000000111 12445655443 5599
Q ss_pred EEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCc------------eeeeeeccCCCE
Q psy307 534 IFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD-ADGKCYIWDWKTTK------------LFKKWKAHDGVC 600 (1019)
Q Consensus 534 iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl~t~~------------~l~~l~~h~~~V 600 (1019)
|.|..+......+..+... ....++.++|||+++++++ .+.+|.++|+.+.+ .+..+..-. ..
T Consensus 258 VID~~~~~~~~~~~~Ipvg---~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~-gP 333 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIA---NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL-GP 333 (595)
T ss_dssp EEECSGGGCCSSEEEEEEE---SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS-CE
T ss_pred EEeCcccCCceeEEEEecC---CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC-Cc
Confidence 9999872110102222211 2245789999999876655 67899999998653 334444333 46
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 601 ISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 601 ~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
..++|+|+| ...++.-.|+.|.+|
T Consensus 334 ~h~aF~~dG-~aY~t~~ldsqV~kw 357 (595)
T 1fwx_A 334 LHTAFDGRG-NAYTSLFLDSQVVKW 357 (595)
T ss_dssp EEEEECTTS-EEEEEETTTTEEEEE
T ss_pred ceEEECCCC-eEEEEEecCCcEEEE
Confidence 899999999 788888899999775
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00088 Score=82.02 Aligned_cols=195 Identities=12% Similarity=0.112 Sum_probs=104.9
Q ss_pred cEEEEEccCCCeEEEEEcc--cc-------ccEeEEEEecCCC---EEEEEEcCCeEEEEECCCCceEEEEecCCceEEE
Q psy307 416 RVKLWEVYKEHRCVRTYYG--HR-------QAVRDICFNNTGT---NFISAGYDRYLKLWDTESGECISRFTSRKVAYCV 483 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~--H~-------~~V~sl~fspdg~---~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v 483 (1019)
.|..+|. .+++.+..+.. |. .+.....+..+|+ .++.++.+|.+.++|..+|+.+............
T Consensus 271 ~v~AlD~-~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~ 349 (668)
T 1kv9_A 271 SILAIRP-DTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE 349 (668)
T ss_dssp EEEEECT-TTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred eEEEEcC-CCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccc
Confidence 4889998 45555555443 32 2222223334665 5888999999999999999998766543311111
Q ss_pred EEecCCCeeeeccC---CCceeeeCCC---CCcccEEEEcCCCCEEEEE-------------------------------
Q psy307 484 KFHPDEDKQHLDIP---VDMKYIADPT---MHSMPAVTSSPNNKWLACQ------------------------------- 526 (1019)
Q Consensus 484 ~~~p~~~~~~~~~~---~~~~~i~~~~---~~~i~~v~~spdg~~Lasg------------------------------- 526 (1019)
.+.+....-..... .....+..+. ...-..++++|+...+.+.
T Consensus 350 ~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 429 (668)
T 1kv9_A 350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT 429 (668)
T ss_dssp EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred ccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccC
Confidence 12111000000000 0000111110 1112235666665554432
Q ss_pred -----ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCE-
Q psy307 527 -----SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVC- 600 (1019)
Q Consensus 527 -----s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V- 600 (1019)
..+|.|..||+.++........ . .......+...|.+|+.|+.||.|+.||.++++.+..++...+..
T Consensus 430 ~~p~~~~~g~l~A~D~~tG~~~W~~~~---~---~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~ 503 (668)
T 1kv9_A 430 DVPAAVVSGALLAWDPVKQKAAWKVPY---P---THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVA 503 (668)
T ss_dssp CCCGGGCEEEEEEEETTTTEEEEEEEE---S---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred CCCCCCccceEEEEeCCCCcEEEEccC---C---CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCccc
Confidence 1347899999988754322221 1 112222334467889999999999999999999998887654211
Q ss_pred EEEEEcCCCCcEEEEEe
Q psy307 601 ISTLWHPHEPSKVVTAG 617 (1019)
Q Consensus 601 ~sl~~sp~~~~~l~s~s 617 (1019)
.-+.+..+|..+++.++
T Consensus 504 ~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 504 APMTFELAGRQYVAIMA 520 (668)
T ss_dssp CCEEEEETTEEEEEEEE
T ss_pred CceEEEECCEEEEEEEe
Confidence 12333445544554444
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00068 Score=71.91 Aligned_cols=197 Identities=8% Similarity=0.063 Sum_probs=120.3
Q ss_pred cceeeeccCCCC--eEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEe--EEEEcCCCCceeEEEeec
Q psy307 326 TQVHTWEGHTKG--ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVR--DICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 326 ~~i~~l~gH~~~--V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~--~i~fspdg~~~vs~i~~~ 401 (1019)
+.+.++ -|... ...+.|+. +.+..+.+.+|.|+++|+.+ ++.+..+.. .... .+.+. +
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~T-gkv~~~~l~--~~~FgeGit~~--g---------- 105 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFHQ--GHFFESTGHQGTLRQLSLES-AQPVWMERL--GNIFAEGLASD--G---------- 105 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET--TEEEEEETTTTEEEECCSSC-SSCSEEEEC--TTCCEEEEEEC--S----------
T ss_pred EEEEEE-cCCCccccceEEEEC--CEEEEEcCCCCEEEEEECCC-CcEEeEECC--CCcceeEEEEe--C----------
Confidence 345555 34333 36788863 68888889999999999954 444444311 1221 23332 2
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceE
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY 481 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~ 481 (1019)
..+.++...++.+.+||. .+.+.+.++..-.. -+.++ ++++.|+.+..++.|.++|..+.+.+.++.......
T Consensus 106 ---~~Ly~ltw~~~~v~V~D~-~Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~ 178 (268)
T 3nok_A 106 ---ERLYQLTWTEGLLFTWSG-MPPQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQ 178 (268)
T ss_dssp ---SCEEEEESSSCEEEEEET-TTTEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTE
T ss_pred ---CEEEEEEccCCEEEEEEC-CcCcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCc
Confidence 245666667899999999 56666666654322 23344 577887777779999999999999888776422100
Q ss_pred EEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEE--e------ccc
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTF--E------GHM 553 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l--~------gh~ 553 (1019)
. ...++.+.+. +|..++....++.|.+.|..++.....+..- . .+.
T Consensus 179 ~-------------------------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~ 232 (268)
T 3nok_A 179 P-------------------------VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTN 232 (268)
T ss_dssp E-------------------------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCC
T ss_pred c-------------------------cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccC
Confidence 0 0112334444 6665555556889999999887543222210 0 111
Q ss_pred cccceEEEEEcCCCC-EEEEE
Q psy307 554 VAGYACSLDFSPDMS-YLISG 573 (1019)
Q Consensus 554 ~~~~V~~v~fspdg~-~Lasg 573 (1019)
.....+.|+++|+++ ++++|
T Consensus 233 ~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 233 PEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTCCEEEEEECTTTCCEEEEE
T ss_pred cCCceEEEEEcCCCCEEEEeC
Confidence 224578999999765 45555
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0082 Score=67.12 Aligned_cols=208 Identities=8% Similarity=-0.029 Sum_probs=119.1
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
..+.+++|.+.++.++++-...+.|..+++.... ....+.........+++.+.+ +.+.++-...+
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~~~~~~~~~p~glavd~~~-------------g~ly~~d~~~~ 138 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEEVVSTGLESPGGLAVDWVH-------------DKLYWTDSGTS 138 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCEEEEETTT-------------TEEEEEETTTT
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCC-ceEEEeCCCCCccEEEEecCC-------------CeEEEEcCCCC
Confidence 4578999998777777777788999999985432 112222222334556665433 35666666778
Q ss_pred cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEE-cC-CeEEEEECCCCceEEEEecCCceEEEEEecCCCeee
Q psy307 416 RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG-YD-RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQH 493 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s-~D-g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~ 493 (1019)
.|.+.++.... ........-.....|+++|.+..|+.+. .. +.|...++....... +
T Consensus 139 ~I~~~~~dG~~-~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~-~------------------- 197 (349)
T 3v64_C 139 RIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI-I------------------- 197 (349)
T ss_dssp EEEEEETTSCS-CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE-S-------------------
T ss_pred eEEEEcCCCCc-eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE-E-------------------
Confidence 88888874332 2222333345678899998666555443 33 567777665322111 1
Q ss_pred eccCCCceeeeCCCCCcccEEEEcCCCCEEE-EEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEE
Q psy307 494 LDIPVDMKYIADPTMHSMPAVTSSPNNKWLA-CQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLIS 572 (1019)
Q Consensus 494 ~~~~~~~~~i~~~~~~~i~~v~~spdg~~La-sgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Las 572 (1019)
..........++++|++..|. +-+..+.|..+++..... ...+.... .....+++. .+.+.++
T Consensus 198 ----------~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~---~~~~~~~~--~~P~giav~-~~~ly~t 261 (349)
T 3v64_C 198 ----------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---KAVISQGL--PHPFAITVF-EDSLYWT 261 (349)
T ss_dssp ----------CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSC--SSEEEEEEE-TTEEEEE
T ss_pred ----------EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce---EEEEeCCC--CCceEEEEE-CCEEEEe
Confidence 011122345678887555554 445567899999875421 12222221 345667773 4444455
Q ss_pred EeCCCeEEEEeCCCCceeeeee
Q psy307 573 GDADGKCYIWDWKTTKLFKKWK 594 (1019)
Q Consensus 573 gs~DG~I~IWDl~t~~~l~~l~ 594 (1019)
-...+.|..++..+|+.+..+.
T Consensus 262 d~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 262 DWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp ETTTTEEEEEETTTCCSCEEEE
T ss_pred cCCCCeEEEEEccCCCccEEec
Confidence 5556777777766666555553
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0089 Score=67.81 Aligned_cols=208 Identities=7% Similarity=-0.047 Sum_probs=120.9
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
..+.+++|.+.++.++++-...+.|..+++.... ....+.........+++.+.+ +.+.++-...+
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~~~~~~~~~p~glavd~~~-------------g~lY~~d~~~~ 181 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEEVVSTGLESPGGLAVDWVH-------------DKLYWTDSGTS 181 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-EEEEECSSCSCCCCEEEETTT-------------TEEEEEETTTT
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-cEEEEeCCCCCccEEEEEeCC-------------CeEEEEcCCCC
Confidence 4588999998777777777788999999984432 222222222233455555433 35666666677
Q ss_pred cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc-C-CeEEEEECCCCceEEEEecCCceEEEEEecCCCeee
Q psy307 416 RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY-D-RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQH 493 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~-D-g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~ 493 (1019)
.|.+.++.... ....+.........|+++|.+..|+.+.. . +.|...++..........
T Consensus 182 ~I~~~~~dg~~-~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~------------------ 242 (386)
T 3v65_B 182 RIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD------------------ 242 (386)
T ss_dssp EEEECBTTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC------------------
T ss_pred eEEEEeCCCCc-eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE------------------
Confidence 88888874322 22233333456788999987766555443 3 567777665432211111
Q ss_pred eccCCCceeeeCCCCCcccEEEEcCCCCEE-EEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEE
Q psy307 494 LDIPVDMKYIADPTMHSMPAVTSSPNNKWL-ACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLIS 572 (1019)
Q Consensus 494 ~~~~~~~~~i~~~~~~~i~~v~~spdg~~L-asgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Las 572 (1019)
........++++|++..| ++-+..+.|..+++..... ...+... ......+++ ..+.++++
T Consensus 243 ------------~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~---~~~~~~~--~~~P~giav-~~~~ly~t 304 (386)
T 3v65_B 243 ------------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---KAVISQG--LPHPFAITV-FEDSLYWT 304 (386)
T ss_dssp ------------SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC---EEEECSS--CSSEEEEEE-ETTEEEEE
T ss_pred ------------CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee---EEEEECC--CCCceEEEE-ECCEEEEe
Confidence 111234467777655544 4445667899999865321 1222222 134667777 34445555
Q ss_pred EeCCCeEEEEeCCCCceeeeee
Q psy307 573 GDADGKCYIWDWKTTKLFKKWK 594 (1019)
Q Consensus 573 gs~DG~I~IWDl~t~~~l~~l~ 594 (1019)
-...+.|..+|..+|+.+..+.
T Consensus 305 d~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 305 DWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp ETTTTEEEEEETTTCCSCEEEE
T ss_pred eCCCCeEEEEECCCCcceEEEc
Confidence 5567788888877777666654
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.021 Score=71.22 Aligned_cols=261 Identities=10% Similarity=0.063 Sum_probs=152.8
Q ss_pred CCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecc-------cCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 335 TKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG-------HRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 335 ~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g-------h~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
...|.++...++ +. |..|+.++-|.+||... .+....... ....|.++...++| .
T Consensus 214 ~~~i~~i~~d~~-g~-lwigt~~~Gl~~~~~~~-~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g---------------~ 275 (795)
T 4a2l_A 214 TKQIQAILQQSP-TR-IWVATEGAGLFLINPKT-KEIKNYLHSPSNPKSISSNYIRSLAMDSQN---------------R 275 (795)
T ss_dssp CCCEEEEEEEET-TE-EEEEEBSSCEEEEETTT-TEEEEECCCTTCTTSCSCSBEEEEEECTTS---------------C
T ss_pred CCeeEEEEEcCC-CC-EEEEECCCCeEEEeCCC-CeEEEeecCCCCccccCCCeEEEEEEcCCC---------------C
Confidence 457888887774 44 44455554588898743 332222111 13458888777776 3
Q ss_pred EEEEeCCCcEEEEEccCCCeEEEEEcc-------ccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEe-----
Q psy307 408 LLSCSMDCRVKLWEVYKEHRCVRTYYG-------HRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFT----- 475 (1019)
Q Consensus 408 L~sgs~Dg~I~IWDl~~~~~~~~~l~~-------H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~----- 475 (1019)
|..|+.+ -|.+||.. .......... ....|.++...++|. |..|+.++-|..|+..++.......
T Consensus 276 lWigt~~-Gl~~~~~~-~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~ 352 (795)
T 4a2l_A 276 LWIGTFN-DLNIYHEG-TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKN 352 (795)
T ss_dssp EEEEESS-CEEEEETT-TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSS
T ss_pred EEEEeCC-hhheEcCC-CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCC
Confidence 4455555 58888873 3333332211 235799999998886 5567788889999876654322211
Q ss_pred --cCCceEEEEEecCCCeeee---------ccCC-CceeeeC--------CCCCcccEEEEcCCCCEEEEEecCCeEEEE
Q psy307 476 --SRKVAYCVKFHPDEDKQHL---------DIPV-DMKYIAD--------PTMHSMPAVTSSPNNKWLACQSMDNKILIF 535 (1019)
Q Consensus 476 --~~~~v~~v~~~p~~~~~~~---------~~~~-~~~~i~~--------~~~~~i~~v~~spdg~~Lasgs~Dg~I~iw 535 (1019)
....+.++...+++..-+- +... ....... .....|.+++..++|..|.+|+.++-|.+|
T Consensus 353 ~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~ 432 (795)
T 4a2l_A 353 SLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSIL 432 (795)
T ss_dssp SCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred CCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEE
Confidence 1234677776665542221 1111 1111111 123457788888888867778888889999
Q ss_pred EccCcccccceeEEec---cccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee------ccCCCEEEEEEc
Q psy307 536 SALNRFKLNRKKTFEG---HMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK------AHDGVCISTLWH 606 (1019)
Q Consensus 536 d~~~~~~~~~~~~l~g---h~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~------~h~~~V~sl~~s 606 (1019)
|..++. ...+.. ......|.++...++|.+.+.. .+ -|.+||..+++...... .+...|.++...
T Consensus 433 d~~~~~----~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 506 (795)
T 4a2l_A 433 HRNSGQ----VENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRD 506 (795)
T ss_dssp ETTTCC----EEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEEC
T ss_pred eCCCCc----EEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCceEEEEEEC
Confidence 987642 122211 0122468899999988866554 44 48899988765433221 123578999888
Q ss_pred CCCCcEEEEEeCCCcEEEE
Q psy307 607 PHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 607 p~~~~~l~s~s~Dg~I~iw 625 (1019)
+++. +..|+.+ .+.++
T Consensus 507 ~~g~--lWigt~~-Gl~~~ 522 (795)
T 4a2l_A 507 SHKR--LWIGGEE-GLSVF 522 (795)
T ss_dssp TTCC--EEEEESS-CEEEE
T ss_pred CCCC--EEEEeCC-ceEEE
Confidence 8873 3334444 45454
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.023 Score=70.88 Aligned_cols=297 Identities=8% Similarity=0.042 Sum_probs=168.8
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVR 373 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~ 373 (1019)
.+.+|+.++... + .+.+++................-.-....|.++...++ |. |..|+.++-|..|+..... ..
T Consensus 270 ~d~~g~lWigt~-~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~-g~-lWigt~~~Gl~~~~~~~~~--~~ 343 (795)
T 4a2l_A 270 MDSQNRLWIGTF-N-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQ-GG-MWLGTYFGGLNYYHPIRNR--FK 343 (795)
T ss_dssp ECTTSCEEEEES-S-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTT-SC-EEEEESSSCEEEECGGGGS--SE
T ss_pred EcCCCCEEEEeC-C-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCC-cC-EEEEECCCCeEEeCCCccc--ce
Confidence 456788776553 3 67777644211100000000000113357999998875 43 5667777888888863221 12
Q ss_pred Eecc-------cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcc--------cccc
Q psy307 374 TYYG-------HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG--------HRQA 438 (1019)
Q Consensus 374 ~~~g-------h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~--------H~~~ 438 (1019)
.+.. ....|.++...++| .|..|+.++-|..|+... +........ ....
T Consensus 344 ~~~~~~~~~~l~~~~V~~i~~d~~g---------------~lWiGt~~~Gl~~~~~~~-~~~~~~~~~~~~~~~~l~~~~ 407 (795)
T 4a2l_A 344 NIRNIPYKNSLSDNVVSCIVEDKDK---------------NLWIGTNDGGLNLYNPIT-QRFTSYTLQEDESARGIGSNN 407 (795)
T ss_dssp EECCCTTSSSCSCSSEEEEEECTTS---------------CEEEEESSSCEEEECTTT-CCEEEECCC------CCSCSC
T ss_pred EEcCCCCCCCCCCCeeEEEEECCCC---------------CEEEEECCCCeEEEcCCC-CcEEEEecCCCCcccCCCCcc
Confidence 2211 23457777777666 366788888899998743 322222111 2467
Q ss_pred EeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEe-----cCCceEEEEEecCCCeeeec--------cCCC-ceeee
Q psy307 439 VRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFT-----SRKVAYCVKFHPDEDKQHLD--------IPVD-MKYIA 504 (1019)
Q Consensus 439 V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~-----~~~~v~~v~~~p~~~~~~~~--------~~~~-~~~i~ 504 (1019)
|.+++..++|+.|..|+.++-|.+||..+++...... ....+.++...+++...+.. .... .....
T Consensus 408 v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~ 487 (795)
T 4a2l_A 408 IKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIE 487 (795)
T ss_dssp EEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECC
T ss_pred EEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEcc
Confidence 9999998888756778888889999998877543321 12456777766655422211 1111 01111
Q ss_pred ------CCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEe-----ccccccceEEEEEcCCCCEEEEE
Q psy307 505 ------DPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFE-----GHMVAGYACSLDFSPDMSYLISG 573 (1019)
Q Consensus 505 ------~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~-----gh~~~~~V~~v~fspdg~~Lasg 573 (1019)
......|.++...++|.+.+.. . +.|..|+..+... .+. .......|.++..+++|.+.+++
T Consensus 488 ~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~-----~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT 560 (795)
T 4a2l_A 488 KEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI-----QKASILPVSNVTKLFTNCIYEASNGIIWVGT 560 (795)
T ss_dssp BCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE-----EECCCSCSCGGGGSCEEEEEECTTSCEEEEE
T ss_pred ccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE-----EEecCCCCCCCCCCeeEEEEECCCCCEEEEe
Confidence 0112457788888888765544 4 5688888765421 111 01122568899999999866654
Q ss_pred eCCCeEEEEeCCCCceeeeeec----cCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 574 DADGKCYIWDWKTTKLFKKWKA----HDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 574 s~DG~I~IWDl~t~~~l~~l~~----h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
. . -|..||..+++.. .+.. ....|.++...++|. |..++..| |..+
T Consensus 561 ~-~-Gl~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~--lWi~t~~G-l~~~ 610 (795)
T 4a2l_A 561 R-E-GFYCFNEKDKQIK-RYNTTNGLPNNVVYGILEDSFGR--LWLSTNRG-ISCF 610 (795)
T ss_dssp S-S-CEEEEETTTTEEE-EECGGGTCSCSCEEEEEECTTSC--EEEEETTE-EEEE
T ss_pred C-C-CceeECCCCCcEE-EeCCCCCCchhheEEEEECCCCC--EEEEcCCc-eEEE
Confidence 4 3 4888998776543 2321 134688888888773 44444444 4343
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0022 Score=67.96 Aligned_cols=202 Identities=9% Similarity=0.055 Sum_probs=120.0
Q ss_pred cceeeeccCCCC--eEEEEEcCCCCcEEEEeeCCC--eEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeec
Q psy307 326 TQVHTWEGHTKG--ISAIRWFPKSAHLLLSCSMDC--RVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 326 ~~i~~l~gH~~~--V~~i~fspd~g~lLaSgs~Dg--~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
+.+.++ -|... ...+.|+ + +.+..+++.+| .|+++|+. +++.+..+.-.. ......+.+++
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~-Tgkv~~~~~l~~-~~FgeGit~~g---------- 96 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-N-GYFYESTGLNGRSSIRKVDIE-SGKTLQQIELGK-RYFGEGISDWK---------- 96 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-T-TEEEEEEEETTEEEEEEECTT-TCCEEEEEECCT-TCCEEEEEEET----------
T ss_pred EEEEEe-cCCCCcccceEEEE-C-CEEEEECCCCCCceEEEEECC-CCcEEEEEecCC-ccceeEEEEeC----------
Confidence 455666 34433 3778887 3 67777888776 99999994 455555543221 12111111122
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceE
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY 481 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~ 481 (1019)
..+.++...++.+.+||. .+.+.+.++...... + .++++++.|+.+..++.|.++|..+.+.+.++.....-.
T Consensus 97 ---~~ly~ltw~~~~v~v~D~-~t~~~~~ti~~~~eG-~--glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~ 169 (262)
T 3nol_A 97 ---DKIVGLTWKNGLGFVWNI-RNLRQVRSFNYDGEG-W--GLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGE 169 (262)
T ss_dssp ---TEEEEEESSSSEEEEEET-TTCCEEEEEECSSCC-C--CEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTE
T ss_pred ---CEEEEEEeeCCEEEEEEC-ccCcEEEEEECCCCc-e--EEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCc
Confidence 245555566899999999 555566665542221 2 344577777776668889999999999888776421000
Q ss_pred EEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeE--Ee-----cccc
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKT--FE-----GHMV 554 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~--l~-----gh~~ 554 (1019)
....++.+.+. +|...+..-.++.|.+.|..++.....+.. +. .+..
T Consensus 170 -------------------------~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~ 223 (262)
T 3nol_A 170 -------------------------ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSP 223 (262)
T ss_dssp -------------------------ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSS
T ss_pred -------------------------cccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCc
Confidence 00112224444 666555555788999999988754322221 00 1111
Q ss_pred ccceEEEEEcCCCCEEEEEeC
Q psy307 555 AGYACSLDFSPDMSYLISGDA 575 (1019)
Q Consensus 555 ~~~V~~v~fspdg~~Lasgs~ 575 (1019)
....+.|+|+|+++.|...+.
T Consensus 224 ~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 224 IDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CCCEEEEEEETTTTEEEEEET
T ss_pred CCceEEEEEcCCCCEEEEECC
Confidence 245789999998876665544
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.025 Score=62.08 Aligned_cols=212 Identities=9% Similarity=-0.028 Sum_probs=121.0
Q ss_pred CCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC---cEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEE
Q psy307 335 TKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE---RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSC 411 (1019)
Q Consensus 335 ~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~---~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sg 411 (1019)
-..+.+++|.+.++.++++-...+.|..+++... ......+...-.....+++.+.+ +++.++-
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~-------------~~ly~~d 95 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH-------------SNIYWTD 95 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT-------------TEEEEEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC-------------CeEEEEE
Confidence 3467899999976777777778899999998431 11111222222234555555433 3556666
Q ss_pred eCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcC--CeEEEEECCCCceEEEEecCCceEEEEEecCC
Q psy307 412 SMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD--RYLKLWDTESGECISRFTSRKVAYCVKFHPDE 489 (1019)
Q Consensus 412 s~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~D--g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~ 489 (1019)
...+.|.+.++.. ................++++|.+..++.+... +.|...++.... ...+..
T Consensus 96 ~~~~~I~~~~~~g-~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~------------- 160 (316)
T 1ijq_A 96 SVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVT------------- 160 (316)
T ss_dssp TTTTEEEEEETTS-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEEC-------------
T ss_pred CCCCEEEEEeCCC-CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEE-------------
Confidence 7788899998843 22222233334567889999876666555443 567777664322 111110
Q ss_pred CeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEE-EecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCC
Q psy307 490 DKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLAC-QSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMS 568 (1019)
Q Consensus 490 ~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Las-gs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~ 568 (1019)
........++++|++..|.. -+..+.|..+|+..... ...............+++. .+.
T Consensus 161 ----------------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~---~~~~~~~~~~~~P~giav~-~~~ 220 (316)
T 1ijq_A 161 ----------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVF-EDK 220 (316)
T ss_dssp ----------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEEECTTTTSSEEEEEEE-TTE
T ss_pred ----------------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce---EEEeecCCccCCcEEEEEE-CCE
Confidence 11223456778876655544 44567999999875321 1112211111345677774 345
Q ss_pred EEEEEeCCCeEEEEeCCCCceeeeee
Q psy307 569 YLISGDADGKCYIWDWKTTKLFKKWK 594 (1019)
Q Consensus 569 ~Lasgs~DG~I~IWDl~t~~~l~~l~ 594 (1019)
++++-...+.|..+|..+++.+..+.
T Consensus 221 ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEECCCCeEEEEeCCCCcceEEEe
Confidence 55555567788888887777665553
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.77 E-value=0.027 Score=64.09 Aligned_cols=214 Identities=10% Similarity=-0.035 Sum_probs=122.5
Q ss_pred CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc---EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEE
Q psy307 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER---RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLS 410 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~---~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~s 410 (1019)
.-..+.+|+|++.++.+.++-...+.|..+++.... .....+.........+++.+.+ +++.++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~-------------~~lY~~ 176 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH-------------SNIYWT 176 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTT-------------TEEEEE
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecC-------------CceEEE
Confidence 345788999999767777777778899999884321 1112222233345566665533 256666
Q ss_pred EeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc--CCeEEEEECCCCceEEEEecCCceEEEEEecC
Q psy307 411 CSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY--DRYLKLWDTESGECISRFTSRKVAYCVKFHPD 488 (1019)
Q Consensus 411 gs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~--Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~ 488 (1019)
-...+.|.+.++. +......+...-.....|+++|.+..|+.+.. .+.|...++........+..
T Consensus 177 d~~~~~I~~~~~~-g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~------------ 243 (400)
T 3p5b_L 177 DSVLGTVSVADTK-GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE------------ 243 (400)
T ss_dssp ETTTTEEEEECTT-TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS------------
T ss_pred ECCCCeEEEEeCC-CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC------------
Confidence 6677888888874 33333333334455788999987666655543 25677777654322211111
Q ss_pred CCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE-ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCC
Q psy307 489 EDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ-SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM 567 (1019)
Q Consensus 489 ~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg-s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg 567 (1019)
.......+++++++..|..+ +..+.|..+|+..... .........-.....+++. .+
T Consensus 244 ------------------~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~---~~~~~~~~~l~~P~gl~v~-~~ 301 (400)
T 3p5b_L 244 ------------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVF-ED 301 (400)
T ss_dssp ------------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC---EEEEECSSTTSSEEEEEEE-TT
T ss_pred ------------------CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc---EEEEeCCCCCCCCEEEEEe-CC
Confidence 11234567777766555544 4567899999875422 1222221111335566663 33
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeeeeec
Q psy307 568 SYLISGDADGKCYIWDWKTTKLFKKWKA 595 (1019)
Q Consensus 568 ~~Lasgs~DG~I~IWDl~t~~~l~~l~~ 595 (1019)
.++++-...+.|..+|..+|+.+..+..
T Consensus 302 ~lywtd~~~~~V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 302 KVFWTDIINEAIFSANRLTGSDVNLLAE 329 (400)
T ss_dssp EEEEEESSSCSEEEEESSSCCCCEEEEC
T ss_pred EEEEecCCCCeEEEEEcCCCCceEEEec
Confidence 4444555567888888777777666653
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.011 Score=68.22 Aligned_cols=242 Identities=11% Similarity=0.086 Sum_probs=129.0
Q ss_pred CeEEEEEcC-CCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 337 GISAIRWFP-KSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 337 ~V~~i~fsp-d~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
....|+++| +++. |+.+...+.|+.+|+.. .. +..+.........|+|+++|. .++++...++
T Consensus 138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~-~~-v~~~~~~~~~P~~ia~d~~G~-------------~lyvad~~~~ 201 (430)
T 3tc9_A 138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEK-EY-VSTVYSGLSKVRTICWTHEAD-------------SMIITNDQNN 201 (430)
T ss_dssp CCCEEEEETTEEEE-EEEEEBTEEEEEEETTT-TE-EEEEECCCSCEEEEEECTTSS-------------EEEEEECCSC
T ss_pred CCCEEEECCCCCCe-EEEEeCCCcEEEEECCC-CE-EEEEecCCCCcceEEEeCCCC-------------EEEEEeCCCC
Confidence 457789998 3444 55444448899999843 33 333333445577888888873 2333333222
Q ss_pred ----cEEEEEccCCCeEEEEEccccccEeEEEEec-CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCC
Q psy307 416 ----RVKLWEVYKEHRCVRTYYGHRQAVRDICFNN-TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDED 490 (1019)
Q Consensus 416 ----~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp-dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~ 490 (1019)
.+.+.+..........+.. ......++++| +|..+++-..++.|..+|..++.........
T Consensus 202 ~~~~~v~~~~~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~------------- 267 (430)
T 3tc9_A 202 NDRPNNYILTRESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ------------- 267 (430)
T ss_dssp TTSEEEEEEEGGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS-------------
T ss_pred cccceEEEEeCCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC-------------
Confidence 2333333221111122221 23356678999 6666666556788999998765432111110
Q ss_pred eeeeccCCCceeeeCCCCCcccEEEEcCCCCEE-EEEecCCeEEEEEccCc-ccccceeEEecc------cc-------c
Q psy307 491 KQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWL-ACQSMDNKILIFSALNR-FKLNRKKTFEGH------MV-------A 555 (1019)
Q Consensus 491 ~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~L-asgs~Dg~I~iwd~~~~-~~~~~~~~l~gh------~~-------~ 555 (1019)
.......++++|+|++| ++-...+.|..++.... ..+.....+.+. .. -
T Consensus 268 ----------------~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~ 331 (430)
T 3tc9_A 268 ----------------DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARM 331 (430)
T ss_dssp ----------------SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBB
T ss_pred ----------------CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEe
Confidence 01223467888888844 44456778888876532 111111222221 00 0
Q ss_pred cceE-EEEEc--------CCCCEEEEEeCCCeEEEEeCCCCceeeeeec----c----C---------CCEEEEEEcCCC
Q psy307 556 GYAC-SLDFS--------PDMSYLISGDADGKCYIWDWKTTKLFKKWKA----H----D---------GVCISTLWHPHE 609 (1019)
Q Consensus 556 ~~V~-~v~fs--------pdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~----h----~---------~~V~sl~~sp~~ 609 (1019)
.... .++.. ++|.+.++=...++|+.++ .+|........ . . .....+++.|++
T Consensus 332 ~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~ 410 (430)
T 3tc9_A 332 HAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEER 410 (430)
T ss_dssp SSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTT
T ss_pred CCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCC
Confidence 1123 44543 4466666555667888888 45543332211 0 1 146889999854
Q ss_pred CcEEEEEeCCCcEEEE
Q psy307 610 PSKVVTAGWDAATAKV 625 (1019)
Q Consensus 610 ~~~l~s~s~Dg~I~iw 625 (1019)
+.++++-...++|+++
T Consensus 411 g~lyVaD~~n~rIr~i 426 (430)
T 3tc9_A 411 ECFFIGDRENRRIRKI 426 (430)
T ss_dssp TEEEEEEGGGTEEEEE
T ss_pred CEEEEEECCCCeEEEE
Confidence 4566666666666654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.012 Score=62.38 Aligned_cols=216 Identities=10% Similarity=0.118 Sum_probs=127.9
Q ss_pred eeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec-ccCccEeEEEEcCCCCceeEEEeecCCCCcEE
Q psy307 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY-GHRQAVRDICFNNTGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 330 ~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~-gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L 408 (1019)
.+.|-.+.+..++|+|+++.++++...++.|...|.. ++.++.+. +-....-.|++.+++ .++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--g~v~~~i~l~g~~D~EGIa~~~~g--------------~~~ 84 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN--GDLIRTIPLDFVKDLETIEYIGDN--------------QFV 84 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT--CCEEEEEECSSCSSEEEEEECSTT--------------EEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC--CCEEEEEecCCCCChHHeEEeCCC--------------EEE
Confidence 4556667899999999877777778889999999984 55666653 112345666666665 455
Q ss_pred EEEeCCCcEEEEEccCCCe--EEEEEc------cccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCce
Q psy307 409 LSCSMDCRVKLWEVYKEHR--CVRTYY------GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVA 480 (1019)
Q Consensus 409 ~sgs~Dg~I~IWDl~~~~~--~~~~l~------~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v 480 (1019)
++.-.++.+.++++...+. .+.... ........|+|+|.++.|+++.......||.+. |. .....
T Consensus 85 vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~-g~-----~~~~~- 157 (255)
T 3qqz_A 85 ISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN-GL-----LSSNE- 157 (255)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE-ST-----TCSSC-
T ss_pred EEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc-cc-----ccCCc-
Confidence 6655677888888755442 122221 234557899999999888877776555555543 10 00000
Q ss_pred EEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC-CEEEEEecCCeEEEEEccCcccccceeEEe-ccc----c
Q psy307 481 YCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN-KWLACQSMDNKILIFSALNRFKLNRKKTFE-GHM----V 554 (1019)
Q Consensus 481 ~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg-~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~-gh~----~ 554 (1019)
..+...+. ...........+++++|.. ++++.......|.++|.... . .....+. +.. .
T Consensus 158 l~i~~~~~-------------~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~-~~~~~L~~g~~~l~~~ 222 (255)
T 3qqz_A 158 LHISKDKA-------------LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-V-IGEMSLTKGSRGLSHN 222 (255)
T ss_dssp CEEEECHH-------------HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-E-EEEEECSTTGGGCSSC
T ss_pred eeeecchh-------------hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-E-EEEEEcCCccCCcccc
Confidence 00000000 0001122346778888864 45555666678888887653 2 2222333 211 0
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy307 555 AGYACSLDFSPDMSYLISGDADGKCYIWDW 584 (1019)
Q Consensus 555 ~~~V~~v~fspdg~~Lasgs~DG~I~IWDl 584 (1019)
-...-.|+|.++|++.++ +.-..++.+.-
T Consensus 223 ~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 223 IKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp CCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred cCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 124678999999985554 66666776653
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0066 Score=63.73 Aligned_cols=199 Identities=8% Similarity=0.033 Sum_probs=118.8
Q ss_pred cceeeeccCCC--CeEEEEEcCCCCcEEEEeeCCC--eEEEEecCCCcEEEEEecccCcc-EeEEEEcCCCCceeEEEee
Q psy307 326 TQVHTWEGHTK--GISAIRWFPKSAHLLLSCSMDC--RVKLWEVYKERRCVRTYYGHRQA-VRDICFNNTGTNFISAIRW 400 (1019)
Q Consensus 326 ~~i~~l~gH~~--~V~~i~fspd~g~lLaSgs~Dg--~I~IWdl~~~~~~~~~~~gh~~~-V~~i~fspdg~~~vs~i~~ 400 (1019)
+.+.++ -|.. -+..+.|++ +.+..+.+.+| .|+++|+. +++.+....-.... --.+.+. +
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~-tgkv~~~~~l~~~~fgeGi~~~--~--------- 74 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLE-TGRILQRAEVPPPYFGAGIVAW--R--------- 74 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETT-TCCEEEEEECCTTCCEEEEEEE--T---------
T ss_pred EEEEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECC-CCCEEEEEeCCCCcceeEEEEe--C---------
Confidence 445555 3443 356888876 56777777754 99999994 45555554322111 1122222 2
Q ss_pred cCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCce
Q psy307 401 FPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVA 480 (1019)
Q Consensus 401 ~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v 480 (1019)
..+......++.+.+||. .+.+.+.++...... +.++ +++..|+.+..++.|.++|..+.+.+.++......
T Consensus 75 ----~~ly~ltw~~~~v~v~D~-~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g 146 (243)
T 3mbr_X 75 ----DRLIQLTWRNHEGFVYDL-ATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGG 146 (243)
T ss_dssp ----TEEEEEESSSSEEEEEET-TTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETT
T ss_pred ----CEEEEEEeeCCEEEEEEC-CcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCC
Confidence 245566667899999999 566666666543322 3444 56777776667899999999999988877642110
Q ss_pred EEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEec---------
Q psy307 481 YCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEG--------- 551 (1019)
Q Consensus 481 ~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~g--------- 551 (1019)
.. ...++.+.+. +|..++..-.++.|.+.|..++.....+.. .+
T Consensus 147 ~~-------------------------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl-~~l~~~~~~~~ 199 (243)
T 3mbr_X 147 RP-------------------------LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDL-QALVPDADALT 199 (243)
T ss_dssp EE-------------------------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEEC-GGGSTTTTSCC
T ss_pred cc-------------------------cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEEC-CcCcccccccc
Confidence 00 0112223333 566555555678999999988754322221 11
Q ss_pred cccccceEEEEEcCCCCEEEEEe
Q psy307 552 HMVAGYACSLDFSPDMSYLISGD 574 (1019)
Q Consensus 552 h~~~~~V~~v~fspdg~~Lasgs 574 (1019)
+......+.|+++|+++.|...+
T Consensus 200 ~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 200 DSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp CTTSSCEEEEEEETTTTEEEEEE
T ss_pred CCcCCceEEEEEcCCCCEEEEEC
Confidence 11224678999999876555444
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0056 Score=75.99 Aligned_cols=120 Identities=12% Similarity=0.078 Sum_probs=67.6
Q ss_pred cCCC-CeEEEEEc-CCCCcEEEEeeCCC----eEEEEecCCC-cEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 333 GHTK-GISAIRWF-PKSAHLLLSCSMDC----RVKLWEVYKE-RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 333 gH~~-~V~~i~fs-pd~g~lLaSgs~Dg----~I~IWdl~~~-~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
+|.- .+...+|| ||+..++++.+.+| +|+++|+.++ ......+. .....+.|+|||.
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~------------- 233 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHT------------- 233 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTT-------------
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCC-------------
Confidence 4443 68889999 97544555544443 5999999554 21111111 1123566666663
Q ss_pred cEEEEEeCC----CcEEEEEccCCCe-EEEEEc-cccccEeEEEEecCCCEEEEEEcC---CeEEEEECCCC
Q psy307 406 HLLLSCSMD----CRVKLWEVYKEHR-CVRTYY-GHRQAVRDICFNNTGTNFISAGYD---RYLKLWDTESG 468 (1019)
Q Consensus 406 ~~L~sgs~D----g~I~IWDl~~~~~-~~~~l~-~H~~~V~sl~fspdg~~l~S~s~D---g~I~lWDl~t~ 468 (1019)
.++++...+ ..|.++++..... ....+. ........+.|+|||++|+..+.+ ..|.++|+.++
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 333433221 3577788744321 122222 223446678999999998766533 35777887664
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.028 Score=64.81 Aligned_cols=241 Identities=9% Similarity=0.035 Sum_probs=131.7
Q ss_pred CeEEEEEcCC--CCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC
Q psy307 337 GISAIRWFPK--SAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD 414 (1019)
Q Consensus 337 ~V~~i~fspd--~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D 414 (1019)
....|+|.|+ .+.++++ ...+.|+.+|.. .+. +..+.........++++++| +++++....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~-~g~-v~~~~~~~~~P~giavd~dG--------------~lyVad~~~ 202 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFV-NQY-VDIKTTNIGQCADVNFTLNG--------------DMVVVDDQS 202 (433)
T ss_dssp CCCEEEECTTTTTCEEEEE-CBTSCEEEEETT-TTE-EEEECCCCSCEEEEEECTTC--------------CEEEEECCS
T ss_pred CCceEEEccccCCCEEEEE-eCCCCEEEEECC-CCE-EEEeecCCCCccEEEECCCC--------------CEEEEcCCC
Confidence 4678999984 4554444 433899999983 333 33444444567888888888 333333211
Q ss_pred ---Cc-EEEEEccCCCeEEEEEccccccEeEEEEec-CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCC
Q psy307 415 ---CR-VKLWEVYKEHRCVRTYYGHRQAVRDICFNN-TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDE 489 (1019)
Q Consensus 415 ---g~-I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp-dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~ 489 (1019)
.. +...+..........+. .-.....++++| +|..+++-..++.|..+|..++.....+....
T Consensus 203 ~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~----------- 270 (433)
T 4hw6_A 203 SDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD----------- 270 (433)
T ss_dssp CTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS-----------
T ss_pred CcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC-----------
Confidence 11 22222211111011111 223345678999 66666665567889999988776532221000
Q ss_pred CeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEE-EEecCCeEEEEEccCc-ccccceeEEecc-c------------c
Q psy307 490 DKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLA-CQSMDNKILIFSALNR-FKLNRKKTFEGH-M------------V 554 (1019)
Q Consensus 490 ~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~La-sgs~Dg~I~iwd~~~~-~~~~~~~~l~gh-~------------~ 554 (1019)
.......++++|+|++|. +-...+.|+.++.... ..+.....+.+. . .
T Consensus 271 -----------------~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~ 333 (433)
T 4hw6_A 271 -----------------TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGAR 333 (433)
T ss_dssp -----------------CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSB
T ss_pred -----------------CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceE
Confidence 001112588999998554 4455678999886521 111111122221 0 0
Q ss_pred ccceEEEEE---------cCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc------------------CCCEEEEEEcC
Q psy307 555 AGYACSLDF---------SPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH------------------DGVCISTLWHP 607 (1019)
Q Consensus 555 ~~~V~~v~f---------spdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h------------------~~~V~sl~~sp 607 (1019)
-.....+++ .++|.+.++-...++|+.++. +|... ++-+. -....++++.|
T Consensus 334 ~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~ 411 (433)
T 4hw6_A 334 LWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDM 411 (433)
T ss_dssp CSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEET
T ss_pred EcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEEC
Confidence 123667899 778877777777789999984 55433 33221 01367888884
Q ss_pred CCCcEEEEEeCCCcEEEE
Q psy307 608 HEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 608 ~~~~~l~s~s~Dg~I~iw 625 (1019)
.++.++++-...++|+++
T Consensus 412 ~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 412 KRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp TTTEEEEEEGGGTEEEEE
T ss_pred CCCEEEEEeCCCCEEEEE
Confidence 343566665556666554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.089 Score=58.56 Aligned_cols=235 Identities=7% Similarity=-0.084 Sum_probs=128.2
Q ss_pred CCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC
Q psy307 335 TKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD 414 (1019)
Q Consensus 335 ~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D 414 (1019)
.+..+|.+..+ .+.++++- ...|+..++... .....+.+ ...+..++|.+ ..+.++++-...
T Consensus 33 ~d~~~C~~~~~-~~~ll~~~--~~~I~~i~~~g~-~~~~~~~~-~~~~~~l~~d~-------------~~~~ly~~D~~~ 94 (349)
T 3v64_C 33 PDRRSCKALGP-EPVLLFAN--RIDIRQVLPHRS-EYTLLLNN-LENAIALDFHH-------------RRELVFWSDVTL 94 (349)
T ss_dssp TTSSCEEESSS-CCEEEEEC--BSCEEEECTTSC-CEEEEECS-CSCEEEEEEET-------------TTTEEEEEETTT
T ss_pred CCCCccccccc-CceeEeec--ccceEEEeCCCC-eeEEeecC-CCceEEEEEec-------------cccEEEEEeccC
Confidence 34456666555 34444432 345777776332 22222222 22345555554 334566666677
Q ss_pred CcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEE-EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeee
Q psy307 415 CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNF-ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQH 493 (1019)
Q Consensus 415 g~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l-~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~ 493 (1019)
+.|..+++.... ..............+++.+.+..| ++-...+.|.+.++........+..
T Consensus 95 ~~I~r~~~~g~~-~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~----------------- 156 (349)
T 3v64_C 95 DRILRANLNGSN-VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ----------------- 156 (349)
T ss_dssp TEEEEEETTSCS-CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT-----------------
T ss_pred CceEEEecCCCC-ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeC-----------------
Confidence 889989884332 222233333445778888765554 4444567888888764432221111
Q ss_pred eccCCCceeeeCCCCCcccEEEEcCCCCEE-EEEecC-CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEE
Q psy307 494 LDIPVDMKYIADPTMHSMPAVTSSPNNKWL-ACQSMD-NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLI 571 (1019)
Q Consensus 494 ~~~~~~~~~i~~~~~~~i~~v~~spdg~~L-asgs~D-g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~La 571 (1019)
.......++++|.+..| ++-... +.|..+++..... ..+.. ..-.....++++|++..|.
T Consensus 157 -------------~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~----~~~~~-~~~~~PnGla~d~~~~~lY 218 (349)
T 3v64_C 157 -------------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR----RIIAD-THLFWPNGLTIDYAGRRMY 218 (349)
T ss_dssp -------------TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----EESCC-SSCSCEEEEEEETTTTEEE
T ss_pred -------------CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc----EEEEE-CCCCCcceEEEeCCCCEEE
Confidence 11233566777754444 444444 7888888765421 11111 1124578999998777666
Q ss_pred EEe-CCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 572 SGD-ADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 572 sgs-~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.++ ..+.|..+|+........+...-....++++. ++.++++-...+.|..+
T Consensus 219 ~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~ 271 (349)
T 3v64_C 219 WVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSA 271 (349)
T ss_dssp EEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred EEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEecCCCCeEEEE
Confidence 555 45789999987543333333333456777773 33456665566667655
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.003 Score=77.15 Aligned_cols=117 Identities=12% Similarity=0.153 Sum_probs=68.1
Q ss_pred EEEEcCCCCcEEEEeeCCC-----------eEEEEecCCCc-EEEEEec-ccCccEeEEEEcCCCCceeEEEeecCCCCc
Q psy307 340 AIRWFPKSAHLLLSCSMDC-----------RVKLWEVYKER-RCVRTYY-GHRQAVRDICFNNTGTNFISAIRWFPKSAH 406 (1019)
Q Consensus 340 ~i~fspd~g~lLaSgs~Dg-----------~I~IWdl~~~~-~~~~~~~-gh~~~V~~i~fspdg~~~vs~i~~~p~~~~ 406 (1019)
++++.|.++.+++.|+.++ .+.+||..... ..+..+. .+.....++++..++ .
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g--------------~ 255 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG--------------Q 255 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS--------------C
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC--------------C
Confidence 4566664578888887543 58889885432 1111121 122223345555555 6
Q ss_pred EEEEEeC-CCcEEEEEccCCCeEEEEEcccc-ccEeEEEEecCCCEEEEEE-cC-----CeEEEEECCCCceE
Q psy307 407 LLLSCSM-DCRVKLWEVYKEHRCVRTYYGHR-QAVRDICFNNTGTNFISAG-YD-----RYLKLWDTESGECI 471 (1019)
Q Consensus 407 ~L~sgs~-Dg~I~IWDl~~~~~~~~~l~~H~-~~V~sl~fspdg~~l~S~s-~D-----g~I~lWDl~t~~~i 471 (1019)
+++.|+. ++.+.+||..+.. ....-..+. ..-.+++..++|+.++.|+ .+ ..+.+||..+++-.
T Consensus 256 lyv~GG~~~~~v~~yd~~t~~-W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 256 IVVTGGNDAKKTSLYDSSSDS-WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp EEEECSSSTTCEEEEEGGGTE-EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred EEEeCCCCCCceEEecCcCCc-eeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence 7777774 5689999985432 222111111 1123446667899998888 44 56999999887643
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0018 Score=79.27 Aligned_cols=250 Identities=8% Similarity=0.025 Sum_probs=140.0
Q ss_pred cEEEEeeCCCeEEEEecCCCcEEEEEecccC-ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC------CCcEEEEE
Q psy307 349 HLLLSCSMDCRVKLWEVYKERRCVRTYYGHR-QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM------DCRVKLWE 421 (1019)
Q Consensus 349 ~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~-~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~------Dg~I~IWD 421 (1019)
..++.++.|+.|..+|..+ ++.+..+.... .....+..+| .+ . ...++.++. +|.|..+|
T Consensus 118 ~~v~v~~~dg~l~alD~~t-G~~~W~~~~~~~~~~~~~~~~P-------~v----~-~~~v~vg~~~~~~~~~g~v~a~D 184 (668)
T 1kv9_A 118 DKVYVGTLDGRLIALDAKT-GKAIWSQQTTDPAKPYSITGAP-------RV----V-KGKVIIGNGGAEYGVRGFVSAYD 184 (668)
T ss_dssp TEEEEECTTSEEEEEETTT-CCEEEEEECSCTTSSCBCCSCC-------EE----E-TTEEEECCBCTTTCCBCEEEEEE
T ss_pred CEEEEEcCCCEEEEEECCC-CCEeeeeccCCCCCcceecCCC-------EE----E-CCEEEEeCCCCCcCCCCEEEEEE
Confidence 4678888999999999844 44454443211 0000000000 00 0 134444433 58999999
Q ss_pred ccCCCeEEEEEccc-------------------------------cccEeEEEEecCCCEEEEEEcCC------------
Q psy307 422 VYKEHRCVRTYYGH-------------------------------RQAVRDICFNNTGTNFISAGYDR------------ 458 (1019)
Q Consensus 422 l~~~~~~~~~l~~H-------------------------------~~~V~sl~fspdg~~l~S~s~Dg------------ 458 (1019)
. .+++.+..+... ......+++++++..++.++.++
T Consensus 185 ~-~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~ 263 (668)
T 1kv9_A 185 A-DTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGG 263 (668)
T ss_dssp T-TTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTC
T ss_pred C-CCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCC
Confidence 9 445554444210 11123468888888888887766
Q ss_pred -------eEEEEECCCCceEEEEecCC-ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCC---EEEEEe
Q psy307 459 -------YLKLWDTESGECISRFTSRK-VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK---WLACQS 527 (1019)
Q Consensus 459 -------~I~lWDl~t~~~i~~~~~~~-~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~---~Lasgs 527 (1019)
.|..+|..+|+.+..+.... .... . . ....+....+..+|+ .++.++
T Consensus 264 gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd-------------~--------~-~~~~~~~~d~~~~G~~~~~v~~~~ 321 (668)
T 1kv9_A 264 GDNLYLSSILAIRPDTGKLAWHYQVTPGDSWD-------------F--------T-ATQQITLAELNIDGKPRKVLMQAP 321 (668)
T ss_dssp CCCTTTTEEEEECTTTCCEEEEEESSTTCCSC-------------C--------C-CCSCEEEEEEEETTEEEEEEEECC
T ss_pred CCceeeeeEEEEcCCCCceeeEeecCCCcccc-------------c--------c-CCCCcEEEEeccCCcEEEEEEEEC
Confidence 39999999999888776421 0000 0 0 000111112223554 688889
Q ss_pred cCCeEEEEEccCccccccee--------EEeccc------------ccc-----------ceEEEEEcCCCCEEEEE---
Q psy307 528 MDNKILIFSALNRFKLNRKK--------TFEGHM------------VAG-----------YACSLDFSPDMSYLISG--- 573 (1019)
Q Consensus 528 ~Dg~I~iwd~~~~~~~~~~~--------~l~gh~------------~~~-----------~V~~v~fspdg~~Lasg--- 573 (1019)
.+|.++++|..++..+.... .+.... ... .-..++++|+..+++..
T Consensus 322 ~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~ 401 (668)
T 1kv9_A 322 KNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQE 401 (668)
T ss_dssp TTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEE
T ss_pred CCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccc
Confidence 99999999988875431110 000000 000 00125778876665541
Q ss_pred ---------------------------------eCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCC
Q psy307 574 ---------------------------------DADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 574 ---------------------------------s~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
..+|.|..||+.+++.+-....+. +.....+...+ .+++.++.||
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~g-g~vf~g~~dg 479 (668)
T 1kv9_A 402 VPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAG-NLVFQGTAAG 479 (668)
T ss_dssp CCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETT-TEEEEECTTS
T ss_pred cceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCC-CEEEEECCcc
Confidence 134889999999999987776443 22333334445 4788889999
Q ss_pred cEEEEeccceeeeeeec
Q psy307 621 ATAKVQDANIVKIAVEM 637 (1019)
Q Consensus 621 ~I~iwwd~~i~ki~~e~ 637 (1019)
.++. +|...+++....
T Consensus 480 ~l~a-~d~~tG~~l~~~ 495 (668)
T 1kv9_A 480 QMHA-YSADKGEALWQF 495 (668)
T ss_dssp EEEE-EETTTCCEEEEE
T ss_pred cchh-hhhhcChhheEe
Confidence 9855 566655555433
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.019 Score=60.83 Aligned_cols=212 Identities=8% Similarity=0.056 Sum_probs=123.3
Q ss_pred ecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEc-cccccEeEEEEecCCCEEEE
Q psy307 375 YYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYY-GHRQAVRDICFNNTGTNFIS 453 (1019)
Q Consensus 375 ~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~-~H~~~V~sl~fspdg~~l~S 453 (1019)
+.+-...+..+++.|++ +.++++...++.|...|.. ++.++.+. +-....-.|++.+++.++++
T Consensus 22 l~g~~~~lSGla~~~~~-------------~~L~aV~d~~~~I~~ld~~--g~v~~~i~l~g~~D~EGIa~~~~g~~~vs 86 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQS-------------NTLFSTINKPAAIVEMTTN--GDLIRTIPLDFVKDLETIEYIGDNQFVIS 86 (255)
T ss_dssp CTTCCSCEEEEEEETTT-------------TEEEEEEETTEEEEEEETT--CCEEEEEECSSCSSEEEEEECSTTEEEEE
T ss_pred CCCcccCcceeEEeCCC-------------CEEEEEECCCCeEEEEeCC--CCEEEEEecCCCCChHHeEEeCCCEEEEE
Confidence 44444456666666554 3566677788888888884 55666553 22356788899888876666
Q ss_pred EEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEE
Q psy307 454 AGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKIL 533 (1019)
Q Consensus 454 ~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~ 533 (1019)
.-.++.+.++++.....+.... .+.+ + ....+.......++++|.++.|.++.......
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~------~~~~-~--------------~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~ 145 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILK------KIKI-P--------------LQESPTNCGFEGLAYSRQDHTFWFFKEKNPIE 145 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEE------EEEC-C--------------CSSCCCSSCCEEEEEETTTTEEEEEEESSSEE
T ss_pred ECCCCcEEEEEcCCCCeeeeee------eecc-c--------------cccccccCCcceEEEeCCCCEEEEEECcCCce
Confidence 5567788888876543221111 0000 0 00112334577899999998777777666555
Q ss_pred EEEccCcccccceeEEec-----cccccceEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeeeeccC---------C
Q psy307 534 IFSALNRFKLNRKKTFEG-----HMVAGYACSLDFSPDM-SYLISGDADGKCYIWDWKTTKLFKKWKAHD---------G 598 (1019)
Q Consensus 534 iwd~~~~~~~~~~~~l~g-----h~~~~~V~~v~fspdg-~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~---------~ 598 (1019)
+|.............+.. ......+.+++++|.. .+++.......|.++|.. |+.+..+.-.. .
T Consensus 146 i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~ 224 (255)
T 3qqz_A 146 VYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIK 224 (255)
T ss_dssp EEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCC
T ss_pred EEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccC
Confidence 555542100001111111 0111236789999954 456666677789999965 55655543221 2
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 599 VCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 599 ~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.--++++.++|. ++++ +..+.++++
T Consensus 225 qpEGia~d~~G~-lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 225 QAEGVAMDASGN-IYIV-SEPNRFYRF 249 (255)
T ss_dssp SEEEEEECTTCC-EEEE-ETTTEEEEE
T ss_pred CCCeeEECCCCC-EEEE-cCCceEEEE
Confidence 568999999984 4444 555554443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0037 Score=77.57 Aligned_cols=197 Identities=9% Similarity=0.009 Sum_probs=107.7
Q ss_pred cEeEEEEc-CCCCceeEEEeecCCCCcEEEEEeCCC----cEEEEEccCC-CeEEEEEccccccEeEEEEecCCCEEEEE
Q psy307 381 AVRDICFN-NTGTNFISAIRWFPKSAHLLLSCSMDC----RVKLWEVYKE-HRCVRTYYGHRQAVRDICFNNTGTNFISA 454 (1019)
Q Consensus 381 ~V~~i~fs-pdg~~~vs~i~~~p~~~~~L~sgs~Dg----~I~IWDl~~~-~~~~~~l~~H~~~V~sl~fspdg~~l~S~ 454 (1019)
.+...+|| |||. .++++.+.+| .|+++|+..+ ......+. ....+++|+|||+.|+..
T Consensus 175 ~~~~~~~S~PDG~-------------~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~ 238 (751)
T 2xe4_A 175 DVMEVKPAPPEHD-------------LVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYV 238 (751)
T ss_dssp EEEEEEECTTTTC-------------EEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEE
T ss_pred EEeeeEecCCCCC-------------EEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEE
Confidence 56778888 8884 2333444333 4999999554 31111111 123467999999988877
Q ss_pred EcCC-----eEEEEECCCCce--EEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEe
Q psy307 455 GYDR-----YLKLWDTESGEC--ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQS 527 (1019)
Q Consensus 455 s~Dg-----~I~lWDl~t~~~--i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs 527 (1019)
+.|. .|.++++.++.. ...+.. ........+.|+|||++|+..+
T Consensus 239 ~~d~~~~~~~v~~~~lgt~~~~~~lv~~~-----------------------------~~~~~~~~~~~SpDg~~l~~~~ 289 (751)
T 2xe4_A 239 TKDETLRENKVWRHVMGKLQSEDVCLYEE-----------------------------HNPLFSAFMYKAADTNTLCIGS 289 (751)
T ss_dssp EECTTCCEEEEEEEETTSCGGGCEEEEEC-----------------------------CCTTCEEEEEECTTSSEEEEEE
T ss_pred EECCCCCCCEEEEEECCCCchhcEEEEec-----------------------------CCCceEEEEEECCCCCEEEEEe
Confidence 7652 577777765531 111110 1111234577899999888766
Q ss_pred c---CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCceeee-eeccCC-
Q psy307 528 M---DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD----GKCYIWDWKTTKLFKK-WKAHDG- 598 (1019)
Q Consensus 528 ~---Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D----G~I~IWDl~t~~~l~~-l~~h~~- 598 (1019)
. ...|.++|+.++........+.... .+...++.|+.++.+++....+ ..|..+|+.++..... +-.|..
T Consensus 290 ~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~ 368 (751)
T 2xe4_A 290 QSPETAEVHLLDLRKGNAHNTLEIVRPRE-KGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSED 368 (751)
T ss_dssp ECSSCEEEEEEESSSCTTCCCEEESSCCC-TTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSS
T ss_pred cCCCCceEEEEECCCCCCCceeEEeecCC-CCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCC
Confidence 3 3478888887642100002222211 1334455555444455555443 3677788765322233 333433
Q ss_pred -CEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 599 -VCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 599 -~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.+.++.+. +..++++...+|...++
T Consensus 369 ~~l~~~~~~--~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 369 VFMESIAVR--SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp EEEEEEEEC--SSEEEEEEEETTEEEEE
T ss_pred cEEEEEEEE--CCEEEEEEEeCCEEEEE
Confidence 34555554 54677888888866543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.024 Score=67.82 Aligned_cols=194 Identities=13% Similarity=-0.027 Sum_probs=101.2
Q ss_pred cEEEEEccCCCeEEEEEcc--cc--------ccEeEEEEecCCC---EEEEEEcCCeEEEEECCCCceEEEEecCCceE-
Q psy307 416 RVKLWEVYKEHRCVRTYYG--HR--------QAVRDICFNNTGT---NFISAGYDRYLKLWDTESGECISRFTSRKVAY- 481 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~--H~--------~~V~sl~fspdg~---~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~- 481 (1019)
.|..+|.. +++.+..+.. |. .++. +....+|+ .++.++.+|.+.++|..+|+.+..+.....+.
T Consensus 273 ~v~Ald~~-tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w 350 (571)
T 2ad6_A 273 TIWGRDLD-TGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV 350 (571)
T ss_dssp EEEEEETT-TCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred EEEEEecC-CCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence 58888984 4555554432 21 2221 22224674 56778889999999999999988776543110
Q ss_pred EEEEecC-CCeeee-c-c--CCCceeeeCCC---CCcccEEEEcCCCCEEEEEe--------------------------
Q psy307 482 CVKFHPD-EDKQHL-D-I--PVDMKYIADPT---MHSMPAVTSSPNNKWLACQS-------------------------- 527 (1019)
Q Consensus 482 ~v~~~p~-~~~~~~-~-~--~~~~~~i~~~~---~~~i~~v~~spdg~~Lasgs-------------------------- 527 (1019)
.-...+. +..... . . +.....+..+. ...-..++++|+..++++.+
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence 0011100 000000 0 0 00000011110 11113456677666665543
Q ss_pred -----------cCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc
Q psy307 528 -----------MDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH 596 (1019)
Q Consensus 528 -----------~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h 596 (1019)
.+|.|..||+.++...... ... ..+.+..+...+..++.++.||.|+.||.++|+.+.+++..
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~---~~~---~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTK---WEK---FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCEEEEE---EES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred eccCccccCCCCCCeEEEEECCCCCEEEEe---cCC---CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence 3478999998877443222 111 11111122224567778999999999999999999888754
Q ss_pred CCC-EEEEEEcCCCCcEEEEEe
Q psy307 597 DGV-CISTLWHPHEPSKVVTAG 617 (1019)
Q Consensus 597 ~~~-V~sl~~sp~~~~~l~s~s 617 (1019)
... -..+.+..++..++++.+
T Consensus 505 ~~~~~~p~~~~~~G~~yv~~~~ 526 (571)
T 2ad6_A 505 SGGIGSPMTYSFKGKQYIGSMY 526 (571)
T ss_dssp SCCCSCCEEEEETTEEEEEEEE
T ss_pred CCcEeeeEEEEECCEEEEEEEC
Confidence 321 112234455643443333
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.49 E-value=0.036 Score=60.98 Aligned_cols=208 Identities=8% Similarity=-0.020 Sum_probs=119.9
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCc
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCR 416 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~ 416 (1019)
.+.+++|.+.++.+..+-...+.|..+++.........+...-.....+++.+. .+.+.++-...+.
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~-------------~g~ly~~d~~~~~ 102 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL-------------GEKLYWTDSETNR 102 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT-------------TTEEEEEETTTTE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC-------------CCeEEEEECCCCE
Confidence 567899998767777787788899999985432111111111223445555543 3356666667788
Q ss_pred EEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc--CCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeee
Q psy307 417 VKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY--DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL 494 (1019)
Q Consensus 417 I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~--Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~ 494 (1019)
|.++++.... ..............|++.|.+..|+.+.. .+.|...++..........
T Consensus 103 I~~~~~dG~~-~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~------------------- 162 (318)
T 3sov_A 103 IEVSNLDGSL-RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN------------------- 162 (318)
T ss_dssp EEEEETTSCS-CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC-------------------
T ss_pred EEEEECCCCc-EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE-------------------
Confidence 9999884322 22223344456788999987666655543 4667766664322111111
Q ss_pred ccCCCceeeeCCCCCcccEEEEcCCCCEEE-EEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEE
Q psy307 495 DIPVDMKYIADPTMHSMPAVTSSPNNKWLA-CQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISG 573 (1019)
Q Consensus 495 ~~~~~~~~i~~~~~~~i~~v~~spdg~~La-sgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasg 573 (1019)
........++++|++..|. +-+..+.|..+|+..... .....+. ......+++.. +.++.+-
T Consensus 163 -----------~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~---~~~~~~~--~~~P~glav~~-~~lywtd 225 (318)
T 3sov_A 163 -----------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR---QAVVKGS--LPHPFALTLFE-DILYWTD 225 (318)
T ss_dssp -----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSC--CSCEEEEEEET-TEEEEEE
T ss_pred -----------CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce---EEEecCC--CCCceEEEEeC-CEEEEEe
Confidence 1112335677887555544 445667899999875321 1122212 14456777753 3444455
Q ss_pred eCCCeEEEEeCCCCceeeeee
Q psy307 574 DADGKCYIWDWKTTKLFKKWK 594 (1019)
Q Consensus 574 s~DG~I~IWDl~t~~~l~~l~ 594 (1019)
...+.|..++..+|+....+.
T Consensus 226 ~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 226 WSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTTTEEEEEETTTCCSCEEEE
T ss_pred cCCCeEEEEECCCCCceEEEe
Confidence 566788888887777665554
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.084 Score=65.37 Aligned_cols=211 Identities=10% Similarity=-0.043 Sum_probs=117.9
Q ss_pred CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc---EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEE
Q psy307 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER---RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLS 410 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~---~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~s 410 (1019)
....+.+|+|.+..+.++++-...+.|+.+++.... .....+.........|++.+.+ +++.++
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~-------------~~LY~t 488 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH-------------SNIYWT 488 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT-------------TEEEEE
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecC-------------CcEEEE
Confidence 445778999998767777777778899999884321 1122222223344556555544 356666
Q ss_pred EeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc-C-CeEEEEECCCCceEEEEecCCceEEEEEecC
Q psy307 411 CSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY-D-RYLKLWDTESGECISRFTSRKVAYCVKFHPD 488 (1019)
Q Consensus 411 gs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~-D-g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~ 488 (1019)
-...+.|.+.++. +......+.........|+++|.+.+|+.+.. . +.|.+.++........+..
T Consensus 489 D~~~~~I~v~~ld-G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~------------ 555 (791)
T 3m0c_C 489 DSVLGTVSVADTK-GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE------------ 555 (791)
T ss_dssp ETTTTEEEEEETT-SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS------------
T ss_pred ecCCCeEEEEeCC-CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC------------
Confidence 6777889999984 33333333334456789999997666655543 2 5677777754332222211
Q ss_pred CCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE-ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCC
Q psy307 489 EDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ-SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM 567 (1019)
Q Consensus 489 ~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg-s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg 567 (1019)
.......|++++.+..|+.. ...+.|..+++..... ...+.....-.....|++. +
T Consensus 556 ------------------~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~---~~v~~~~~~l~~P~glav~--~ 612 (791)
T 3m0c_C 556 ------------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVF--E 612 (791)
T ss_dssp ------------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEEECTTTTSSEEEEEEE--T
T ss_pred ------------------CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce---EEEecCCCccCCCCEEEEe--C
Confidence 11234456777655555444 4556888888865422 2222221111234456653 3
Q ss_pred CEEEEE-eCCCeEEEEeCCCCceeeee
Q psy307 568 SYLISG-DADGKCYIWDWKTTKLFKKW 593 (1019)
Q Consensus 568 ~~Lasg-s~DG~I~IWDl~t~~~l~~l 593 (1019)
.+|+.. ...+.|...|..+|+.+..+
T Consensus 613 ~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 613 DKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 344433 34567777776666655544
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.053 Score=61.32 Aligned_cols=233 Identities=7% Similarity=-0.078 Sum_probs=125.4
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCc
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCR 416 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~ 416 (1019)
.-+|.+..+ .+.++++ ....|+..++... ....... ....+..++|.+ ..+.++++-...+.
T Consensus 78 ~~~C~~~~~-~~~l~~~--~~~~I~~i~~~~~-~~~~~~~-~~~~~~gl~~d~-------------~~~~ly~~D~~~~~ 139 (386)
T 3v65_B 78 RRSCKALGP-EPVLLFA--NRIDIRQVLPHRS-EYTLLLN-NLENAIALDFHH-------------RRELVFWSDVTLDR 139 (386)
T ss_dssp SSCEEECSS-CCEEEEE--CBSCEEEECTTSC-CCEEEEC-SCSCEEEEEEET-------------TTTEEEEEETTTTE
T ss_pred CCeECCccc-cceeEee--cCccceeeccCCC-cEEEEec-CCCccEEEEEec-------------CCCeEEEEeCCCCc
Confidence 344555444 2333333 3356777777332 2222222 223345555554 33456666667788
Q ss_pred EEEEEccCCCeEEEEEccccccEeEEEEecCCCEEE-EEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeec
Q psy307 417 VKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFI-SAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLD 495 (1019)
Q Consensus 417 I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~-S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~ 495 (1019)
|..+++... .....+.........+++.+.+..|+ +-...+.|.+.++........+..
T Consensus 140 I~r~~~~g~-~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~------------------- 199 (386)
T 3v65_B 140 ILRANLNGS-NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ------------------- 199 (386)
T ss_dssp EEEEETTSC-CEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECS-------------------
T ss_pred EEEEecCCC-CcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecC-------------------
Confidence 999988433 23233333333456778887655544 444456777777654332221111
Q ss_pred cCCCceeeeCCCCCcccEEEEcCCCCEEEEE-ecC-CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEE
Q psy307 496 IPVDMKYIADPTMHSMPAVTSSPNNKWLACQ-SMD-NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISG 573 (1019)
Q Consensus 496 ~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg-s~D-g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasg 573 (1019)
.......++++|.+..|... ... +.|..+++..... ....... -.....++++|++..|+.+
T Consensus 200 -----------~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~---~~~~~~~--~~~PnGlavd~~~~~lY~a 263 (386)
T 3v65_B 200 -----------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR---RIIADTH--LFWPNGLTIDYAGRRMYWV 263 (386)
T ss_dssp -----------SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EEEECSS--CSCEEEEEEEGGGTEEEEE
T ss_pred -----------CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc---EEEEECC--CCCeeeEEEeCCCCEEEEE
Confidence 11233566777755544443 344 6888888765421 1111111 2457899999877766655
Q ss_pred e-CCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 574 D-ADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 574 s-~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+ ..+.|..+|+........+........++++. ++.++++-...+.|..+
T Consensus 264 D~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~ 314 (386)
T 3v65_B 264 DAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSA 314 (386)
T ss_dssp ETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred ECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE--CCEEEEeeCCCCeEEEE
Confidence 4 45789999986543333333333456777773 33566666566667555
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.14 Score=63.66 Aligned_cols=260 Identities=7% Similarity=-0.029 Sum_probs=147.1
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec-------ccCccEeEEEEcCCCCceeEEEeecCCCCcEE
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY-------GHRQAVRDICFNNTGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~-------gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L 408 (1019)
..|.++...++ +.+. .|+.+ -+.+||.... ....... -....|.++...++| .|
T Consensus 211 ~~i~~i~~d~~-g~lw-igt~~-Gl~~~d~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~d~~g---------------~l 271 (781)
T 3v9f_A 211 NDVRCIYKDTN-GNIW-IGTSK-GLALFNANTE-TFTNFHNNPGNIHGALSSYIFSIKQLKDN---------------KL 271 (781)
T ss_dssp SSEEEEEECTT-CCEE-EEETT-EEEEEETTTT-EEEC-----------CCCCEEEEEECTTS---------------EE
T ss_pred CceeEEEEcCC-CCEE-EEeCC-cHheECCCCC-cEEEEEcCCCccccccCceEEEEEECCCC---------------CE
Confidence 46888888774 4444 34445 5888987332 2221111 123457777777666 46
Q ss_pred EEEeCCCcEEEEEccCCCeEEEEEc--------------cccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEE
Q psy307 409 LSCSMDCRVKLWEVYKEHRCVRTYY--------------GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRF 474 (1019)
Q Consensus 409 ~sgs~Dg~I~IWDl~~~~~~~~~l~--------------~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~ 474 (1019)
..|+..+-|.++|.... ....... -....|.++...++|. |..|+.++-|..++..++......
T Consensus 272 Wigt~~~Gl~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~ 349 (781)
T 3v9f_A 272 WIATELNGIMILDLQQN-QFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWS 349 (781)
T ss_dssp EEEESSSCEEEEETTCC----------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC
T ss_pred EEEeCCCCeEEECCCCC-eeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeec
Confidence 66777567888887432 2211111 1345799999988876 566777888999998766543321
Q ss_pred e----------cCCceEEEEEecCCCeeeeccCCCcee-------ee------CCCCCcccEEEEcCCCCEEEEEecCCe
Q psy307 475 T----------SRKVAYCVKFHPDEDKQHLDIPVDMKY-------IA------DPTMHSMPAVTSSPNNKWLACQSMDNK 531 (1019)
Q Consensus 475 ~----------~~~~v~~v~~~p~~~~~~~~~~~~~~~-------i~------~~~~~~i~~v~~spdg~~Lasgs~Dg~ 531 (1019)
. ....+.++...+++..-+-........ .. ......|.++...++|.+ .+|+.++-
T Consensus 350 ~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~G 428 (781)
T 3v9f_A 350 YSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGN 428 (781)
T ss_dssp ----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCE-EEEETTEE
T ss_pred cCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCC
Confidence 1 124567777666544222110111100 00 112345777877777764 45777778
Q ss_pred EEEEEccCcccccceeEEec-cccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc-----CCCEEEEEE
Q psy307 532 ILIFSALNRFKLNRKKTFEG-HMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH-----DGVCISTLW 605 (1019)
Q Consensus 532 I~iwd~~~~~~~~~~~~l~g-h~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h-----~~~V~sl~~ 605 (1019)
|..++..++. ...+.. ......|.++...++|.+.+ |+. +-|..||..+++........ ...|.++..
T Consensus 429 l~~~~~~~~~----~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 502 (781)
T 3v9f_A 429 ISYYNTRLKK----FQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQ 502 (781)
T ss_dssp EEEECSSSCE----EEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEE
T ss_pred EEEEcCCCCc----EEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEE
Confidence 8889876542 112211 11225688899888887555 444 45889998876653322222 357889988
Q ss_pred cCCCCcEEEEEeCCCcEEEE
Q psy307 606 HPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 606 sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.+++. |..|+.++.+.++
T Consensus 503 d~~g~--lWigt~~~Gl~~~ 520 (781)
T 3v9f_A 503 DSEGR--FWIGTFGGGVGIY 520 (781)
T ss_dssp CTTCC--EEEEESSSCEEEE
T ss_pred cCCCC--EEEEEcCCCEEEE
Confidence 88773 4445553345454
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.013 Score=70.16 Aligned_cols=196 Identities=11% Similarity=0.084 Sum_probs=104.9
Q ss_pred CcEEEEEccCCCeEEEEEc--ccc--------ccEeEEEEe-cCCC---EEEEEEcCCeEEEEECCCCceEEEEecCCce
Q psy307 415 CRVKLWEVYKEHRCVRTYY--GHR--------QAVRDICFN-NTGT---NFISAGYDRYLKLWDTESGECISRFTSRKVA 480 (1019)
Q Consensus 415 g~I~IWDl~~~~~~~~~l~--~H~--------~~V~sl~fs-pdg~---~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v 480 (1019)
+.|..+|.. +++.+..+. .|. .++. +... .+|+ .++.++.+|.+.++|.++|+.+..+.....+
T Consensus 291 ~~v~AlD~~-TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~ 368 (582)
T 1flg_A 291 SGQVGVDPS-SGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNI 368 (582)
T ss_dssp SEEEEECTT-TCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCC
T ss_pred ceEEEEeCC-CCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCc
Confidence 579999984 455555543 232 1221 1221 4674 6788999999999999999999887754311
Q ss_pred E-EEEEecCCCeeeec---c--------CCCceeeeCCC---CCcccEEEEcCCCCEEEEEe------------------
Q psy307 481 Y-CVKFHPDEDKQHLD---I--------PVDMKYIADPT---MHSMPAVTSSPNNKWLACQS------------------ 527 (1019)
Q Consensus 481 ~-~v~~~p~~~~~~~~---~--------~~~~~~i~~~~---~~~i~~v~~spdg~~Lasgs------------------ 527 (1019)
. .-...+........ . +........+. ...-..++++|+...+++..
T Consensus 369 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~ 448 (582)
T 1flg_A 369 TWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGS 448 (582)
T ss_dssp CSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTS
T ss_pred cccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCC
Confidence 1 00111110000000 0 00000011110 11122455666554444432
Q ss_pred ---------------cCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee
Q psy307 528 ---------------MDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKK 592 (1019)
Q Consensus 528 ---------------~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~ 592 (1019)
.+|.|.-||+.++........ ......+. ....+.+++.|+.||.++.||.++|+.+..
T Consensus 449 ~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~-----~~tagglvf~g~~dg~l~A~D~~tG~~lW~ 522 (582)
T 1flg_A 449 AYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKE-HLPLWAGV-----LATAGNLVFTGTGDGYFKAFDAKSGKELWK 522 (582)
T ss_dssp CCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEE-SSCCCSCC-----EEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ceeccceeecCCCCCCcceEEEEECCCCCEEEEecC-CCCCcccc-----eEeCCCEEEEECCCCcEEEEECCCCCEEEE
Confidence 257899999988754322221 11111111 112466788899999999999999999998
Q ss_pred eeccCCCE-EEEEEcCCCCcEEEEEeC
Q psy307 593 WKAHDGVC-ISTLWHPHEPSKVVTAGW 618 (1019)
Q Consensus 593 l~~h~~~V-~sl~~sp~~~~~l~s~s~ 618 (1019)
++...+.. .-+.+..+|..+|++.+.
T Consensus 523 ~~~~~g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 523 FQTGSGIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp EECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred ecCCCCcccCceEEEECCEEEEEEEcc
Confidence 87644321 124555666555554443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.073 Score=66.17 Aligned_cols=260 Identities=7% Similarity=-0.021 Sum_probs=150.0
Q ss_pred CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecc----------cCccEeEEEEcCCCCceeEEEeecCC
Q psy307 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG----------HRQAVRDICFNNTGTNFISAIRWFPK 403 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g----------h~~~V~~i~fspdg~~~vs~i~~~p~ 403 (1019)
....|.++...++ + .|..|+.++-|..++..... ...+.. ....|.++...++|
T Consensus 311 ~~~~v~~i~~D~~-g-~lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g------------ 374 (781)
T 3v9f_A 311 SNASARYIFQDSF-N-NIWIGTWGGGINFISNAPPT--FHTWSYSPTQMNESSLSNKVVSSVCDDGQG------------ 374 (781)
T ss_dssp SSSCEEEEEECSS-C-CEEEEEBSSCEEEECSSCCS--CEEEC----CCCSSCCSSSCEEEEEECTTS------------
T ss_pred CCCeEEEEEEeCC-C-CEEEEecCCeEEEeCCCCCc--ceeeccCccccccCCCCCcceEEEEEcCCC------------
Confidence 3467999988775 3 36667777788888874322 122210 23457777776665
Q ss_pred CCcEEEEEeCCCcEEEEEccCCCeEEEEE----ccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEe---c
Q psy307 404 SAHLLLSCSMDCRVKLWEVYKEHRCVRTY----YGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFT---S 476 (1019)
Q Consensus 404 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l----~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~---~ 476 (1019)
.|..|+.++-|..||... .. ...+ ......|.++...++|.. ..|+.++-|..+|..+++...... .
T Consensus 375 ---~lWigt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~ 448 (781)
T 3v9f_A 375 ---KLWIGTDGGGINVFENGK-RV-AIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNE 448 (781)
T ss_dssp ---CEEEEEBSSCEEEEETTE-EE-EECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTC
T ss_pred ---CEEEEeCCCcEEEEECCC-Ce-EEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCC
Confidence 366777777788888732 21 1111 123467899988877764 457777789999988776433221 1
Q ss_pred CCceEEEEEecCCCeeee--------ccCC-CceeeeCCC-----CCcccEEEEcCCCCEEEEEecCCeEEEEEccCccc
Q psy307 477 RKVAYCVKFHPDEDKQHL--------DIPV-DMKYIADPT-----MHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFK 542 (1019)
Q Consensus 477 ~~~v~~v~~~p~~~~~~~--------~~~~-~~~~i~~~~-----~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~ 542 (1019)
...+.++...+++..-+. +... ......... ...+.++...++|.+. +|+.++-|..||..+..
T Consensus 449 ~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~- 526 (781)
T 3v9f_A 449 LLDVRVFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFW-IGTFGGGVGIYTPDMQL- 526 (781)
T ss_dssp CCCEEEEEECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEE-EEESSSCEEEECTTCCE-
T ss_pred CCeEEEEEECCCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEE-EEEcCCCEEEEeCCCCe-
Confidence 245666666555432211 1111 111111111 3457788888888755 45554457778876531
Q ss_pred ccceeEEec--cccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc----CCCEEEEEEcCCCCcEEEEE
Q psy307 543 LNRKKTFEG--HMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH----DGVCISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 543 ~~~~~~l~g--h~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h----~~~V~sl~~sp~~~~~l~s~ 616 (1019)
...+.. ......|.++...++|.+.++. .+|.|..||..+++. ..+... ...|.++...++|. |..+
T Consensus 527 ---~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~--lW~~ 599 (781)
T 3v9f_A 527 ---VRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGN--IWAS 599 (781)
T ss_dssp ---EEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSC--EEEE
T ss_pred ---EEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCC--EEEE
Confidence 122221 1123568899999999866654 477658899877653 333221 23577888887773 4555
Q ss_pred eCCCcEEEE
Q psy307 617 GWDAATAKV 625 (1019)
Q Consensus 617 s~Dg~I~iw 625 (1019)
+.+| |..+
T Consensus 600 t~~G-l~~~ 607 (781)
T 3v9f_A 600 TNTG-ISCY 607 (781)
T ss_dssp CSSC-EEEE
T ss_pred cCCc-eEEE
Confidence 5565 4343
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.024 Score=62.05 Aligned_cols=178 Identities=11% Similarity=0.029 Sum_probs=99.9
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEc------------------cccccEeEEEEecCCCEEEEEEcCCeEEEEECCC
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYY------------------GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTES 467 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~------------------~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t 467 (1019)
.+++++..++.|..||............ .....+.++++.+++..|+.+...+.|..+|..+
T Consensus 31 ~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~ 110 (322)
T 2fp8_A 31 KGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEG 110 (322)
T ss_dssp SSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTTC
T ss_pred CEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCCC
Confidence 5677888899999998743222111111 0123578899997333555565556688888765
Q ss_pred CceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC-CCCEEEEEec-----------------C
Q psy307 468 GECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP-NNKWLACQSM-----------------D 529 (1019)
Q Consensus 468 ~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp-dg~~Lasgs~-----------------D 529 (1019)
+... .+... ..+ ........+++.+ +|.+.++-.. +
T Consensus 111 g~~~-~~~~~---------~~~----------------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~ 164 (322)
T 2fp8_A 111 GHAT-QLATS---------VDG----------------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKT 164 (322)
T ss_dssp EECE-EEESE---------ETT----------------EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCC
T ss_pred CEEE-Eeccc---------CCC----------------CcccccceEEEecCCCEEEEECCcccccccccceehcccCCC
Confidence 5321 11110 000 0012234577777 7766555432 3
Q ss_pred CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCc--eeeeeeccCCCEEEEEEc
Q psy307 530 NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISG-DADGKCYIWDWKTTK--LFKKWKAHDGVCISTLWH 606 (1019)
Q Consensus 530 g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasg-s~DG~I~IWDl~t~~--~l~~l~~h~~~V~sl~~s 606 (1019)
+.|..||..++... ....+- .....++++|+|++|+.+ +..+.|.+|++.... ....+....+ ...+++.
T Consensus 165 g~v~~~d~~~~~~~---~~~~~~---~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d 237 (322)
T 2fp8_A 165 GRLIKYDPSTKETT---LLLKEL---HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRN 237 (322)
T ss_dssp EEEEEEETTTTEEE---EEEEEE---SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEEC
T ss_pred ceEEEEeCCCCEEE---EeccCC---ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEEC
Confidence 67888887654211 111111 235579999999976655 456899999987532 1122211223 6788999
Q ss_pred CCCCcEEEEEe
Q psy307 607 PHEPSKVVTAG 617 (1019)
Q Consensus 607 p~~~~~l~s~s 617 (1019)
++|. ++++..
T Consensus 238 ~~G~-l~va~~ 247 (322)
T 2fp8_A 238 ADGH-FWVSSS 247 (322)
T ss_dssp TTSC-EEEEEE
T ss_pred CCCC-EEEEec
Confidence 9884 555443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.045 Score=65.64 Aligned_cols=83 Identities=17% Similarity=0.094 Sum_probs=49.6
Q ss_pred CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCE-EEEEEcC
Q psy307 529 DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVC-ISTLWHP 607 (1019)
Q Consensus 529 Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V-~sl~~sp 607 (1019)
.|.|.-||+.++........ ......+. ....|.+|+.|+.||.|+.||.++|+.+.+++...+.+ .-+.+..
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~-~~~~~~g~-----~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~ 525 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKME-RFAVWGGT-----MATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTH 525 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEE-SSCCCSBC-----EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred cCeEEEEECCCCCEEeEecC-CCCccCcc-----eEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEe
Confidence 47888888887744322211 11111111 12256678889999999999999999998887544321 1234445
Q ss_pred CCCcEEEEEe
Q psy307 608 HEPSKVVTAG 617 (1019)
Q Consensus 608 ~~~~~l~s~s 617 (1019)
+|..++++.+
T Consensus 526 ~G~qyv~~~~ 535 (599)
T 1w6s_A 526 KGTQYVAIYY 535 (599)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEc
Confidence 5644554443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.073 Score=58.65 Aligned_cols=259 Identities=8% Similarity=-0.001 Sum_probs=136.0
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec----ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEE
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY----GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSC 411 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~----gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sg 411 (1019)
..+.+|.|.+. +..++ ++.+|.|... . ..++.-.... .....+.+|.+.+ + ..++ +
T Consensus 36 ~~~~~v~~~~~-~~~~~-~G~~g~i~~s-~-DgG~tW~~~~~~~~~~~~~~~~i~~~~-~--------------~~~~-~ 95 (327)
T 2xbg_A 36 ATILDMSFIDR-HHGWL-VGVNATLMET-R-DGGQTWEPRTLVLDHSDYRFNSVSFQG-N--------------EGWI-V 95 (327)
T ss_dssp SCEEEEEESSS-SCEEE-EETTTEEEEE-S-STTSSCEECCCCCSCCCCEEEEEEEET-T--------------EEEE-E
T ss_pred CcEEEEEECCC-CcEEE-EcCCCeEEEe-C-CCCCCCeECCCCCCCCCccEEEEEecC-C--------------eEEE-E
Confidence 36889998764 55666 4567765332 2 2222111111 1233466666654 2 3333 3
Q ss_pred eCCCcEEEEEccCCCeEEEEEc---cccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEe--cCCceEEEEEe
Q psy307 412 SMDCRVKLWEVYKEHRCVRTYY---GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFT--SRKVAYCVKFH 486 (1019)
Q Consensus 412 s~Dg~I~IWDl~~~~~~~~~l~---~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~--~~~~v~~v~~~ 486 (1019)
+.+|.|.. ....++.-.... .+.+.+..|.+.+++..++ ++.++.|.. ....|+.-.... ....+..+.+.
T Consensus 96 g~~g~i~~--S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~ 171 (327)
T 2xbg_A 96 GEPPIMLH--TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEM-ITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRS 171 (327)
T ss_dssp EETTEEEE--ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEE-EETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEEC
T ss_pred ECCCeEEE--ECCCCCCceECccccCCCCCeEEEEEECCCCEEE-EeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEc
Confidence 44554332 223232222221 2345577788877766555 445665432 222343333332 23456788888
Q ss_pred cCCCeeeeccCCCc-----------eeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEec-ccc
Q psy307 487 PDEDKQHLDIPVDM-----------KYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEG-HMV 554 (1019)
Q Consensus 487 p~~~~~~~~~~~~~-----------~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~g-h~~ 554 (1019)
|++...++...... ..+.......+..+.+.+++..++ .+.+|.+++.+...+........ . -..
T Consensus 172 ~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~--~~~~~ 248 (327)
T 2xbg_A 172 PSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLS--PLRRN 248 (327)
T ss_dssp TTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBC--TTSSC
T ss_pred CCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccC--CcccC
Confidence 87665544321111 112223345567888889887664 45678887764332322211110 1 001
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec---cCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 555 AGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA---HDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 555 ~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~---h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
...+.++.+.+++.++++|. +|.| ++....|+.-..+.. +...+.++.|.+++ .++++|.+|.|..+
T Consensus 249 ~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~--~~~~~G~~G~i~~~ 318 (327)
T 2xbg_A 249 SVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD--QGFILGQKGILLRY 318 (327)
T ss_dssp CSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT--EEEEECSTTEEEEE
T ss_pred CcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC--ceEEEcCCceEEEE
Confidence 12477889998888777664 6766 455555655554442 23567888887543 58888899988665
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.079 Score=57.55 Aligned_cols=225 Identities=9% Similarity=-0.016 Sum_probs=119.1
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeC-CC-eEEEEecCCCcE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSM-DC-RVKLWEVYKERR 370 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~-Dg-~I~IWdl~~~~~ 370 (1019)
..+.+|+.+++-...+.|..++.... ....+. -.+.+.++++.++ ++++++... ++ .|..++... ++
T Consensus 38 a~~~~g~lyv~d~~~~~I~~~d~~g~--------~~~~~~-~~~~p~gia~~~d-G~l~vad~~~~~~~v~~~d~~~-g~ 106 (306)
T 2p4o_A 38 ASAPDGTIFVTNHEVGEIVSITPDGN--------QQIHAT-VEGKVSGLAFTSN-GDLVATGWNADSIPVVSLVKSD-GT 106 (306)
T ss_dssp EECTTSCEEEEETTTTEEEEECTTCC--------EEEEEE-CSSEEEEEEECTT-SCEEEEEECTTSCEEEEEECTT-SC
T ss_pred EECCCCCEEEEeCCCCeEEEECCCCc--------eEEEEe-CCCCceeEEEcCC-CcEEEEeccCCcceEEEEcCCC-Ce
Confidence 35668888887767777777764421 111121 2346889999996 555555433 22 455566533 22
Q ss_pred EEEEec-ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEc---------cccccEe
Q psy307 371 CVRTYY-GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYY---------GHRQAVR 440 (1019)
Q Consensus 371 ~~~~~~-gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~---------~H~~~V~ 440 (1019)
...... ........++..+++ ..+++-..++.|.++|.......+.... ..-...+
T Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~--------------~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pn 172 (306)
T 2p4o_A 107 VETLLTLPDAIFLNGITPLSDT--------------QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN 172 (306)
T ss_dssp EEEEEECTTCSCEEEEEESSSS--------------EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred EEEEEeCCCccccCcccccCCC--------------cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCC
Confidence 221111 111112233322222 3444544688888888733211121111 1112344
Q ss_pred EEEEecCCCEEEEE-EcCCeEEEEECCC-CceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC
Q psy307 441 DICFNNTGTNFISA-GYDRYLKLWDTES-GECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP 518 (1019)
Q Consensus 441 sl~fspdg~~l~S~-s~Dg~I~lWDl~t-~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp 518 (1019)
.| +++++.|+.+ +..+.|..+|+.. +.. .. ..+ +.. ......+++++
T Consensus 173 gi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~----~~-~~~----------------------~~~--~~~P~gi~vd~ 221 (306)
T 2p4o_A 173 GL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP----GE-PEI----------------------FVE--QTNIDDFAFDV 221 (306)
T ss_dssp EE--EEETTEEEEEETTTTEEEEEEBCTTSCB----CC-CEE----------------------EEE--SCCCSSEEEBT
T ss_pred Cc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC----Cc-cEE----------------------Eec--cCCCCCeEECC
Confidence 45 7788765544 4567888888764 221 00 000 000 01234688899
Q ss_pred CCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEc---CCCCEEEEEeCCC
Q psy307 519 NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS---PDMSYLISGDADG 577 (1019)
Q Consensus 519 dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fs---pdg~~Lasgs~DG 577 (1019)
+|+++++....+.|.+++.... . ..+..+. .....+++++|. ||++.|+.++..+
T Consensus 222 dG~l~va~~~~~~V~~~~~~G~-~-~~~~~~~--~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 222 EGNLYGATHIYNSVVRIAPDRS-T-TIIAQAE--QGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCCEEEECBTTCCEEEECTTCC-E-EEEECGG--GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCCEEEEeCCCCeEEEECCCCC-E-EEEeecc--cccCCceEEEEecccCCCCEEEEECCCC
Confidence 9988777777889999987532 1 1111111 112457899998 8988777666544
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.021 Score=68.48 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=43.4
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEcccc----ccEeE-EEEecCCCEEEEEE------cCCeEEEEECCCCceEEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGHR----QAVRD-ICFNNTGTNFISAG------YDRYLKLWDTESGECISRF 474 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~----~~V~s-l~fspdg~~l~S~s------~Dg~I~lWDl~t~~~i~~~ 474 (1019)
.+|+.++.|+.|..+|..++. .+....... ..+.+ ..+. ++ .++.++ .++.|+-+|.++|+.+..+
T Consensus 122 ~rV~v~t~dg~l~AlDa~TG~-~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~ 198 (599)
T 1w6s_A 122 ALILKTQLDGNVAALNAETGE-TVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRA 198 (599)
T ss_dssp CEEEEECTTSEEEEEETTTCC-EEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred eEEEEEcCCCEEEEEECCCCC-EEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEE
Confidence 348888999999999985444 443332211 01111 1121 44 455554 3899999999999999887
Q ss_pred ecC
Q psy307 475 TSR 477 (1019)
Q Consensus 475 ~~~ 477 (1019)
...
T Consensus 199 ~~~ 201 (599)
T 1w6s_A 199 YAT 201 (599)
T ss_dssp ESS
T ss_pred cCC
Confidence 654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.23 Score=54.21 Aligned_cols=216 Identities=10% Similarity=-0.069 Sum_probs=119.2
Q ss_pred CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCC---CeEEEEEcc
Q psy307 358 CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE---HRCVRTYYG 434 (1019)
Q Consensus 358 g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~---~~~~~~l~~ 434 (1019)
..|+..|+... .....+. .......++|.+.+ +.++++-...+.|..+++... ......+..
T Consensus 10 ~~I~~i~~~~~-~~~~~~~-~~~~p~g~~~d~~~-------------~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~ 74 (316)
T 1ijq_A 10 HEVRKMTLDRS-EYTSLIP-NLRNVVALDTEVAS-------------NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 74 (316)
T ss_dssp SSEEEEETTSC-CCEEEEC-SCSSEEEEEEETTT-------------TEEEEEETTTTEEEEEEC--------CEEEECS
T ss_pred CeEEEEECCCc-ceEehhc-CCCceEEEEEEeCC-------------CEEEEEECCCCcEEEEECCCCCCCcccEEEEeC
Confidence 45788887432 2222222 22345556665543 356666667789999988431 122222332
Q ss_pred ccccEeEEEEecCCCEE-EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccE
Q psy307 435 HRQAVRDICFNNTGTNF-ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPA 513 (1019)
Q Consensus 435 H~~~V~sl~fspdg~~l-~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~ 513 (1019)
.-.....+++++.+..| ++-...+.|.+.|+........+.. .......
T Consensus 75 ~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~------------------------------~~~~P~~ 124 (316)
T 1ijq_A 75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE------------------------------NGSKPRA 124 (316)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC------------------------------TTCCEEE
T ss_pred CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC------------------------------CCCCcce
Confidence 33456788888755554 4445677888888764432221111 1123346
Q ss_pred EEEcCCCCEEEEEec-C-CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCcee
Q psy307 514 VTSSPNNKWLACQSM-D-NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD-ADGKCYIWDWKTTKLF 590 (1019)
Q Consensus 514 v~~spdg~~Lasgs~-D-g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl~t~~~l 590 (1019)
++++|.+..|+.... . +.|..+++.... ...+... .-.....++++|++..|+.++ ..+.|..+|+.... .
T Consensus 125 iavdp~~g~ly~~d~~~~~~I~~~~~dG~~----~~~~~~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~ 198 (316)
T 1ijq_A 125 IVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----IYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-R 198 (316)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCC----EEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-C
T ss_pred EEeCCCCCEEEEEccCCCCeEEEEcCCCCC----eEEEEEC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-e
Confidence 677775554444433 3 688888876432 1222111 124578999999877776665 45689999987433 3
Q ss_pred eee-ec--cCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 591 KKW-KA--HDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 591 ~~l-~~--h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
..+ .. .-....++++. ++.++++-...++|..+.
T Consensus 199 ~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~ 235 (316)
T 1ijq_A 199 KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSAN 235 (316)
T ss_dssp EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEe
Confidence 333 21 12345677774 335666666667776654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.087 Score=58.76 Aligned_cols=62 Identities=13% Similarity=-0.020 Sum_probs=38.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce------eeeeeccCCCEEEEEEcCCCCcEEEEE-eCCC
Q psy307 557 YACSLDFSPDMSYLISGDADGKCYIWDWKTTKL------FKKWKAHDGVCISTLWHPHEPSKVVTA-GWDA 620 (1019)
Q Consensus 557 ~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~------l~~l~~h~~~V~sl~~sp~~~~~l~s~-s~Dg 620 (1019)
....++| .+|.++++.-..+.|...++..... ...+-...+.+.++++.|+|. ++++. +.+|
T Consensus 269 ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~-lyv~~~~~~g 337 (352)
T 2ism_A 269 PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGA-LYVTTSNRDG 337 (352)
T ss_dssp CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSC-EEEEECSTTT
T ss_pred CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCc-EEEEEeCCCC
Confidence 3567777 4677666666667788877764431 122222235789999999984 44443 4444
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.05 Score=65.06 Aligned_cols=245 Identities=10% Similarity=-0.004 Sum_probs=134.2
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEecc--cCc--cEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC------CCcE
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYG--HRQ--AVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM------DCRV 417 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g--h~~--~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~------Dg~I 417 (1019)
+..++.++.|+.|..+|..+ ++.+..... +.. .+.+ +| .+ . ...++.++. ++.|
T Consensus 115 ~~~v~v~~~dg~l~alD~~t-G~~~W~~~~~~~~~~~~~~~---~P-------~v----~-~g~v~vg~~~~~~~~~g~v 178 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKT-GKINWEVEVCDPKVGSTLTQ---AP-------FV----A-KDTVLMGCSGAELGVRGAV 178 (571)
T ss_dssp TTEEEEECTTSEEEEEETTT-CCEEEEEECCCGGGTCBCCS---CC-------EE----E-TTEEEEECBCGGGTCCCEE
T ss_pred CCEEEEEeCCCEEEEEECCC-CCEEEEecCCCCCccceecc---CC-------EE----E-CCEEEEEecCCccCCCCEE
Confidence 34678888899999999844 444443321 110 1110 00 00 0 134555554 7999
Q ss_pred EEEEccCCCeEEEEEcccccc--------------------------------------EeEEEEecCCCEEEEEEcC--
Q psy307 418 KLWEVYKEHRCVRTYYGHRQA--------------------------------------VRDICFNNTGTNFISAGYD-- 457 (1019)
Q Consensus 418 ~IWDl~~~~~~~~~l~~H~~~--------------------------------------V~sl~fspdg~~l~S~s~D-- 457 (1019)
..+|.. +++.+..+...... ...+++.++...++.++.+
T Consensus 179 ~a~D~~-tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~ 257 (571)
T 2ad6_A 179 NAFDLK-TGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPA 257 (571)
T ss_dssp EEEETT-TCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCS
T ss_pred EEEECC-CCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCc
Confidence 999994 44444443221100 0235677766666665532
Q ss_pred --------------CeEEEEECCCCceEEEEecCCc-eEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCC-
Q psy307 458 --------------RYLKLWDTESGECISRFTSRKV-AYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK- 521 (1019)
Q Consensus 458 --------------g~I~lWDl~t~~~i~~~~~~~~-v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~- 521 (1019)
+.|..+|..+|+.+..++.... .. + .+.. .....+....+|+
T Consensus 258 ~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~------d---------------~~~~-~~p~l~~~~~~G~~ 315 (571)
T 2ad6_A 258 PWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW------D---------------FAGV-NQMVLTDQPVNGKM 315 (571)
T ss_dssp CSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS------C---------------CCCC-CCCEEEEEEETTEE
T ss_pred cccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccc------c---------------cccC-CCCEEEecccCCcE
Confidence 3689999999998877654210 00 0 0000 0011112224663
Q ss_pred --EEEEEecCCeEEEEEccCcccccceeEEec-c--------ccccce--------------------------EEEEEc
Q psy307 522 --WLACQSMDNKILIFSALNRFKLNRKKTFEG-H--------MVAGYA--------------------------CSLDFS 564 (1019)
Q Consensus 522 --~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~g-h--------~~~~~V--------------------------~~v~fs 564 (1019)
.++.++.+|.+.++|..++..+.... +.. . ....++ ..++++
T Consensus 316 ~~~v~~~~~~G~l~~lD~~tG~~~w~~~-~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~d 394 (571)
T 2ad6_A 316 TPLLSHIDRNGILYTLNRENGNLIVAEK-VDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYD 394 (571)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEE-SSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEE
T ss_pred EEEEEEeCCCcEEEEEECCCCCEEeeec-ccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceEC
Confidence 57778889999999988774432211 100 0 000000 235788
Q ss_pred CCCCEEEEEe-------------------------------------CCCeEEEEeCCCCceeeeeeccCCCEEEEEEcC
Q psy307 565 PDMSYLISGD-------------------------------------ADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHP 607 (1019)
Q Consensus 565 pdg~~Lasgs-------------------------------------~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp 607 (1019)
|+..+|+..+ .+|.|..||+.+++.+.++.... .+.+.....
T Consensus 395 p~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t 473 (571)
T 2ad6_A 395 PESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYT 473 (571)
T ss_dssp TTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEE
T ss_pred CCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEE
Confidence 8877776653 35789999999999887775432 222222222
Q ss_pred CCCcEEEEEeCCCcEEEEeccceeeeee
Q psy307 608 HEPSKVVTAGWDAATAKVQDANIVKIAV 635 (1019)
Q Consensus 608 ~~~~~l~s~s~Dg~I~iwwd~~i~ki~~ 635 (1019)
.+ .+++.++.||.++.+ |...+++.-
T Consensus 474 ~g-g~v~~g~~dg~l~a~-D~~tG~~lw 499 (571)
T 2ad6_A 474 KG-GLVWYATLDGYLKAL-DNKDGKELW 499 (571)
T ss_dssp TT-TEEEEECTTSEEEEE-ETTTCCEEE
T ss_pred CC-CEEEEEcCCCeEEEE-ECCCCCEEE
Confidence 34 367778999998654 555555543
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.089 Score=62.96 Aligned_cols=59 Identities=19% Similarity=-0.009 Sum_probs=37.5
Q ss_pred CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeec
Q psy307 576 DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEM 637 (1019)
Q Consensus 576 DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~ 637 (1019)
+|.|.-||+.+++.+-+...+. ++.+-.....+ .+++.++.||.++. +|...++++-..
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tag-glvf~g~~dg~l~A-~D~~tG~~lW~~ 523 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAG-NLVFTGTGDGYFKA-FDAKSGKELWKF 523 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETT-TEEEEECTTSEEEE-EETTTCCEEEEE
T ss_pred cceEEEEECCCCCEEEEecCCC-CCcccceEeCC-CEEEEECCCCcEEE-EECCCCCEEEEe
Confidence 6889999999999887765432 22111111224 47888999998855 466666655443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.075 Score=58.61 Aligned_cols=205 Identities=11% Similarity=0.196 Sum_probs=120.4
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC---CCcEEEEEccC
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM---DCRVKLWEVYK 424 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~---Dg~I~IWDl~~ 424 (1019)
..+++.....+-+.++|+ .++.+..+.. +.++.+..-|.- ...-..-.++++... +++|.+|++..
T Consensus 40 ~s~ii~t~k~~gL~Vydl--~G~~l~~~~~--g~~nnVD~r~~~-------~l~g~~~dla~as~R~~~~n~l~vf~iDp 108 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL--DGKMLHSYNT--GKLNNVDIRYDF-------PLNGKKVDIAAASNRSEGKNTIEIYAIDG 108 (355)
T ss_dssp GCEEEEEETTTEEEEEET--TSCEEEEECC--SCEEEEEEEEEE-------EETTEEEEEEEEEECSTTCCEEEEEEECT
T ss_pred ccEEEEEcCCCCEEEEcC--CCcEEEEccC--CCcccEEEeccc-------ccCCceEeEEEEeCCCCCCCeEEEEEECC
Confidence 455666677889999999 4455666653 456666554411 000000013344443 57899998843
Q ss_pred CCeEEEEEcc------cc-ccEeEEEE--ecC-CC-EEEEEEcCCeEEEEECC---CC----ceEEEEecCCceEEEEEe
Q psy307 425 EHRCVRTYYG------HR-QAVRDICF--NNT-GT-NFISAGYDRYLKLWDTE---SG----ECISRFTSRKVAYCVKFH 486 (1019)
Q Consensus 425 ~~~~~~~l~~------H~-~~V~sl~f--spd-g~-~l~S~s~Dg~I~lWDl~---t~----~~i~~~~~~~~v~~v~~~ 486 (1019)
....+..+.. .. ..+..+|+ +|. +. +++....+|.+..|++. .+ +.+++|....
T Consensus 109 ~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs-------- 180 (355)
T 3amr_A 109 KNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS-------- 180 (355)
T ss_dssp TTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS--------
T ss_pred CCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC--------
Confidence 3333444422 11 56677788 664 44 57778888999999872 22 3444444332
Q ss_pred cCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcc--cccceeEEeccccccceEEEEE-
Q psy307 487 PDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRF--KLNRKKTFEGHMVAGYACSLDF- 563 (1019)
Q Consensus 487 p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~--~~~~~~~l~gh~~~~~V~~v~f- 563 (1019)
.+..+...+....|+++-.+.-|..|+..... ....+..+.+......+..+++
T Consensus 181 -----------------------q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~ 237 (355)
T 3amr_A 181 -----------------------QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIY 237 (355)
T ss_dssp -----------------------CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEE
T ss_pred -----------------------CcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEE
Confidence 34456667777889999988777777754221 1122222221111234667777
Q ss_pred -cCCCC-EEEEEe-CCCeEEEEeCC-CCceeeeee
Q psy307 564 -SPDMS-YLISGD-ADGKCYIWDWK-TTKLFKKWK 594 (1019)
Q Consensus 564 -spdg~-~Lasgs-~DG~I~IWDl~-t~~~l~~l~ 594 (1019)
.++|+ ||++.+ .+.++.+||.. +.+.+..+.
T Consensus 238 ~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 238 YAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp ECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred ecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 55666 666555 67799999996 667777774
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.11 E-value=0.12 Score=56.70 Aligned_cols=191 Identities=8% Similarity=-0.060 Sum_probs=105.5
Q ss_pred EeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEE-EEEEcCCeEEEEECCCCceEEEEec
Q psy307 398 IRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNF-ISAGYDRYLKLWDTESGECISRFTS 476 (1019)
Q Consensus 398 i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l-~S~s~Dg~I~lWDl~t~~~i~~~~~ 476 (1019)
+.|.+..+.+..+-...+.|..+++.........+...-.....+++.+.+..| ++-...+.|.++++........+..
T Consensus 40 ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~ 119 (318)
T 3sov_A 40 VDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQ 119 (318)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred EEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeC
Confidence 344444446666767778888888854422112222223456678888755544 4444567888888764432221111
Q ss_pred CCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEe--cCCeEEEEEccCcccccceeEEecccc
Q psy307 477 RKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQS--MDNKILIFSALNRFKLNRKKTFEGHMV 554 (1019)
Q Consensus 477 ~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs--~Dg~I~iwd~~~~~~~~~~~~l~gh~~ 554 (1019)
.......++++|.+..|+... ..+.|..+++..... .......
T Consensus 120 ------------------------------~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~---~~~~~~~-- 164 (318)
T 3sov_A 120 ------------------------------ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR---FIIINSE-- 164 (318)
T ss_dssp ------------------------------SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC---EEEECSS--
T ss_pred ------------------------------CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe---EEEEECC--
Confidence 112234566676544444444 257888888765321 1111111
Q ss_pred ccceEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 555 AGYACSLDFSPDMSYLISGD-ADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 555 ~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
-.....++++|++..|+.++ ..+.|..+|+........+...-....++++.. +.++++-...+.|..+
T Consensus 165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~--~~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILAC 234 (318)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET--TEEEEEETTTTEEEEE
T ss_pred CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC--CEEEEEecCCCeEEEE
Confidence 14578999999777666655 467899999864332222232334556777753 2456665555666444
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.18 Score=58.64 Aligned_cols=252 Identities=7% Similarity=0.014 Sum_probs=126.8
Q ss_pred CeEEEEEcCC-CCcEEEEeeCCCeEEEEecCCCcEEEEEecc---cCccEeEEEE-------cCCCCceeEEEeecCCCC
Q psy307 337 GISAIRWFPK-SAHLLLSCSMDCRVKLWEVYKERRCVRTYYG---HRQAVRDICF-------NNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 337 ~V~~i~fspd-~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g---h~~~V~~i~f-------spdg~~~vs~i~~~p~~~ 405 (1019)
....|+|.|. .++++++....+.|++.|+. .+.+...... .......|+| +++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~-~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G-------------- 204 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLK-NRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEA-------------- 204 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETT-TTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTT--------------
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECC-CCEEEEEEccCccccCCCcEEEEeecccccCCCC--------------
Confidence 4678999983 45555555555778888873 3333332222 1234778888 7777
Q ss_pred cEEEEEeCCC-------cEEEEEccCCCeEE-----EEEccccccEeEEEEecCCCE-EEEEEcCCeEEEEECC------
Q psy307 406 HLLLSCSMDC-------RVKLWEVYKEHRCV-----RTYYGHRQAVRDICFNNTGTN-FISAGYDRYLKLWDTE------ 466 (1019)
Q Consensus 406 ~~L~sgs~Dg-------~I~IWDl~~~~~~~-----~~l~~H~~~V~sl~fspdg~~-l~S~s~Dg~I~lWDl~------ 466 (1019)
..|+.+...+ .|.+.+....+... ..+... .....++++|++.. +++-..++.|..+|+.
T Consensus 205 ~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~ 283 (496)
T 3kya_A 205 EYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTI 283 (496)
T ss_dssp CEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHH
T ss_pred CEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccc
Confidence 3344444332 25555532211111 122211 23356688995444 5555567789999986
Q ss_pred -CCceEEEEe-cC-CceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEE-EEEecCCeEEEEEccCcc-
Q psy307 467 -SGECISRFT-SR-KVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWL-ACQSMDNKILIFSALNRF- 541 (1019)
Q Consensus 467 -t~~~i~~~~-~~-~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~L-asgs~Dg~I~iwd~~~~~- 541 (1019)
++..-.... .. .... .....+.......++++|+|++| ++-+..+.|+.++.....
T Consensus 284 ~tg~~~tp~~~~~~g~~~-------------------~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~ 344 (496)
T 3kya_A 284 KNGGSWDPIVKNNPNTFK-------------------QLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK 344 (496)
T ss_dssp HTTCCCCCBGGGCTTTEE-------------------EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred cCceeecccccccccccc-------------------eeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc
Confidence 443200000 00 0000 00001111233568888888854 444556788886654321
Q ss_pred cccceeEEecc------cc-------ccceE-EEEEc-------CCCCEEEEEeCCCeEEEEeCCCCceeeeeecc----
Q psy307 542 KLNRKKTFEGH------MV-------AGYAC-SLDFS-------PDMSYLISGDADGKCYIWDWKTTKLFKKWKAH---- 596 (1019)
Q Consensus 542 ~~~~~~~l~gh------~~-------~~~V~-~v~fs-------pdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h---- 596 (1019)
.+.....+.+. .. -.... .++.. ++|.++++=....+|+.++ .+|. +.++-+.
T Consensus 345 ~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~ 422 (496)
T 3kya_A 345 EFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGAST 422 (496)
T ss_dssp EECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTH
T ss_pred eecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccc
Confidence 11001122221 00 01233 34554 5666666666778999998 4563 4444321
Q ss_pred -----------C---------CCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 597 -----------D---------GVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 597 -----------~---------~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+ ....+|++.++++.++++=....+|+++
T Consensus 423 ~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki 471 (496)
T 3kya_A 423 SLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTI 471 (496)
T ss_dssp HHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 0 1356788888633455555555666554
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.02 E-value=0.28 Score=55.67 Aligned_cols=217 Identities=9% Similarity=-0.078 Sum_probs=119.9
Q ss_pred CCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCC---CeEEEEEc
Q psy307 357 DCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE---HRCVRTYY 433 (1019)
Q Consensus 357 Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~---~~~~~~l~ 433 (1019)
...|+..++.... ... +......+..++|++.+ +.+.++-...+.|..+++... ........
T Consensus 91 ~~~I~~i~l~~~~-~~~-~~~~~~~~~~l~~d~~~-------------~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~ 155 (400)
T 3p5b_L 91 RHEVRKMTLDRSE-YTS-LIPNLRNVVALDTEVAS-------------NRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 155 (400)
T ss_dssp TTEEEEECTTSCS-CEE-EECSCSCEEEEEEETTT-------------TEEEEEETTTTEEEEEEC------CCCEEEEC
T ss_pred cceeEEEccCCcc-eeE-eccccCcceEEeeeecc-------------CceEEEecCCCeEEEEEcccCCCCCcceEEEe
Confidence 4678888874322 111 22233445566665543 355666666788888887432 12223333
Q ss_pred cccccEeEEEEecCCCEE-EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCccc
Q psy307 434 GHRQAVRDICFNNTGTNF-ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMP 512 (1019)
Q Consensus 434 ~H~~~V~sl~fspdg~~l-~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~ 512 (1019)
........|++.+.+..| ++-...+.|.+.++........+... .....
T Consensus 156 ~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~------------------------------~~~P~ 205 (400)
T 3p5b_L 156 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN------------------------------GSKPR 205 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECS------------------------------SCCEE
T ss_pred CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCC------------------------------CCCcc
Confidence 344567788888755444 44445678888887655433222211 12234
Q ss_pred EEEEcCCCCEEEEEe-c-CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCce
Q psy307 513 AVTSSPNNKWLACQS-M-DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA-DGKCYIWDWKTTKL 589 (1019)
Q Consensus 513 ~v~~spdg~~Lasgs-~-Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~-DG~I~IWDl~t~~~ 589 (1019)
.++++|.+.+|+... . .+.|...++..... ....... -.....+++++++..|+.++. .+.|..+|+.....
T Consensus 206 ~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~---~~~~~~~--l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~ 280 (400)
T 3p5b_L 206 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 280 (400)
T ss_dssp EEEEETTTTEEEEEECSSSCCEEEEETTSCSC---EEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC
T ss_pred eEEEecccCeEEEEeCCCCCEEEEEeCCCCcc---EEEEECC--CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc
Confidence 566676544444443 2 36788888765421 1112221 145789999998877776654 57899999865433
Q ss_pred eeeeec--cCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 590 FKKWKA--HDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 590 l~~l~~--h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
...+.. .-....+++.. ++.++++-...+.|..+
T Consensus 281 ~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~ 316 (400)
T 3p5b_L 281 KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSA 316 (400)
T ss_dssp EEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEE
T ss_pred EEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEE
Confidence 322222 22345677763 33566666566677555
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.027 Score=61.58 Aligned_cols=172 Identities=11% Similarity=0.084 Sum_probs=103.5
Q ss_pred EEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcc----cc--ccEeEEEE---ecCCCEEEEEEc-----------
Q psy307 397 AIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG----HR--QAVRDICF---NNTGTNFISAGY----------- 456 (1019)
Q Consensus 397 ~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~----H~--~~V~sl~f---spdg~~l~S~s~----------- 456 (1019)
+..|++..+.++++.-..++|..||..........+.+ .. ..+..|.| .|+++.+++...
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~ 96 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS 96 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence 46677766677777778999999998433322223332 11 13578999 688777665432
Q ss_pred --CCeEEEEECC---CCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC-C
Q psy307 457 --DRYLKLWDTE---SGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD-N 530 (1019)
Q Consensus 457 --Dg~I~lWDl~---t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D-g 530 (1019)
+..|..+|+. +++.+......... + ...............++..++|+..++++.. +
T Consensus 97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~-------~----------~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~ 159 (334)
T 2p9w_A 97 HGASSFHSFNLPLSENSKPVWSVNFEKVQ-------D----------EFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMP 159 (334)
T ss_dssp SSCCEEEEEESSCCTTCCCSEEEESHHHH-------H----------HHHHHHSSCCEEEEEEEECTTSCEEEEEEESSC
T ss_pred CCCCEEEEEcCCcCCCCCEEEEecCcccc-------c----------cccccccccccCCceeEECCCCCEEEeCCCCCC
Confidence 5778889988 77665444321000 0 0000000011234567788888888888887 8
Q ss_pred eEEEEEccCcccccceeEEec--cccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy307 531 KILIFSALNRFKLNRKKTFEG--HMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTT 587 (1019)
Q Consensus 531 ~I~iwd~~~~~~~~~~~~l~g--h~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~ 587 (1019)
.|..++.... ...... +.. .......+.|+++|+|..|++....|.|.-+|+.+.
T Consensus 160 ~I~rV~pdG~-~~~~~~-~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 160 AIARVSADGK-TVSTFA-WESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEEEECTTSC-CEEEEE-ECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred eEEEEeCCCC-EEeeee-ecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 8777776543 111110 111 001123568999999998888877999999998853
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.39 Score=53.43 Aligned_cols=224 Identities=13% Similarity=0.051 Sum_probs=116.5
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec---ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY---GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS 412 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~---gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs 412 (1019)
....+++|.|+ +. |+.+..+|.|++++. .....+..+. ........|+++|+-. .++.+.++-+
T Consensus 29 ~~P~~ia~~pd-G~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~----------~~g~lyv~~~ 95 (354)
T 3a9g_A 29 EVPWSIAPLGG-GR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFP----------KKSWVYLYAS 95 (354)
T ss_dssp SCEEEEEEEET-TE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTT----------TSCEEEEEEE
T ss_pred CCCeEEEEcCC-Ce-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCC----------cCCEEEEEEe
Confidence 45788999996 55 555566799999974 2222222221 1123456677766500 0223333333
Q ss_pred C---C----CcEEEEEccCC------CeE-EEEEc-cccccEeEEEEecCCCEEEEEEc-------------CCeEEEEE
Q psy307 413 M---D----CRVKLWEVYKE------HRC-VRTYY-GHRQAVRDICFNNTGTNFISAGY-------------DRYLKLWD 464 (1019)
Q Consensus 413 ~---D----g~I~IWDl~~~------~~~-~~~l~-~H~~~V~sl~fspdg~~l~S~s~-------------Dg~I~lWD 464 (1019)
. + +.|..|+.... .+. +..+. +.......|+|.|||..+++.+. .|.|.-+|
T Consensus 96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~ 175 (354)
T 3a9g_A 96 YFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVD 175 (354)
T ss_dssp EECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEEC
T ss_pred ccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEc
Confidence 2 2 45666766432 111 11122 11223467899999987776442 24566666
Q ss_pred CCCC--------c-eEEEEecCCceEEEEEec-CCCeeeeccCCC----ceee--------------------------e
Q psy307 465 TESG--------E-CISRFTSRKVAYCVKFHP-DEDKQHLDIPVD----MKYI--------------------------A 504 (1019)
Q Consensus 465 l~t~--------~-~i~~~~~~~~v~~v~~~p-~~~~~~~~~~~~----~~~i--------------------------~ 504 (1019)
.... . .+. ......+..++|+| ++...+.+.... ...+ .
T Consensus 176 ~dG~~p~~npf~~~~i~-a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 254 (354)
T 3a9g_A 176 EEGRPPADNPFPNSPIW-SYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDT 254 (354)
T ss_dssp TTSCCCTTSSSTTCCEE-EECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred CCCCCCCCCCCCCCcEE-EEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeec
Confidence 5432 0 111 12334577889999 454433322110 0000 0
Q ss_pred CCCCCcccEEEE-------cCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe
Q psy307 505 DPTMHSMPAVTS-------SPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD 574 (1019)
Q Consensus 505 ~~~~~~i~~v~~-------spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs 574 (1019)
.........+++ ..+|.++++....+.|...++...........+... ....+..+++.|||.+.++..
T Consensus 255 ~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~-~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 255 GSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKN-VFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp TTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTT-TSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccC-CCCCeeEEEECCCCcEEEEEe
Confidence 011223456666 356777777777788988888753222111222211 124588899999998666654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.36 Score=58.17 Aligned_cols=206 Identities=8% Similarity=-0.050 Sum_probs=119.4
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
..+.+|+|++.++.+..+-..++.|..+++.... ....+.........+++...+ +++.++-...+
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-~~~v~~~g~~~P~GlAvD~~~-------------~~LY~tD~~~~ 102 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-LEHVVEFGLDYPEGMAVDWLG-------------KNLYWADTGTN 102 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCEEEEETTT-------------TEEEEEETTTT
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-cEEEEeCCCCCcceEEEEeCC-------------CEEEEEECCCC
Confidence 4678999999877777787888999999984332 122222112234455555443 35666666678
Q ss_pred cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc--CCeEEEEECCCCceEEEEecCCceEEEEEecCCCeee
Q psy307 416 RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY--DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQH 493 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~--Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~ 493 (1019)
.|.+.++..... .......-.....|++.|....|+.+.. .+.|...++........+.
T Consensus 103 ~I~v~~~dG~~~-~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~------------------ 163 (628)
T 4a0p_A 103 RIEVSKLDGQHR-QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP------------------ 163 (628)
T ss_dssp EEEEEETTSTTC-EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC------------------
T ss_pred EEEEEecCCCcE-EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC------------------
Confidence 888888743322 2222233455688999986556555543 3566666665433221111
Q ss_pred eccCCCceeeeCCCCCcccEEEEcCCCCEEE-EEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEE
Q psy307 494 LDIPVDMKYIADPTMHSMPAVTSSPNNKWLA-CQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLIS 572 (1019)
Q Consensus 494 ~~~~~~~~~i~~~~~~~i~~v~~spdg~~La-sgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Las 572 (1019)
.......+++++++..|. +-...+.|..+++..... ..+.... .....+++.. +.+.++
T Consensus 164 -------------~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~----~v~~~~l--~~P~glav~~-~~ly~t 223 (628)
T 4a0p_A 164 -------------NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR----EVIADDL--PHPFGLTQYQ-DYIYWT 223 (628)
T ss_dssp -------------SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEEECC--SCEEEEEEET-TEEEEE
T ss_pred -------------CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce----EEeeccC--CCceEEEEEC-CEEEEe
Confidence 122345677777655444 445567899999876432 1222221 3355777754 344444
Q ss_pred EeCCCeEEEEeCCCCceeeeee
Q psy307 573 GDADGKCYIWDWKTTKLFKKWK 594 (1019)
Q Consensus 573 gs~DG~I~IWDl~t~~~l~~l~ 594 (1019)
-...+.|...|..+++....+.
T Consensus 224 D~~~~~I~~~dk~tg~~~~~l~ 245 (628)
T 4a0p_A 224 DWSRRSIERANKTSGQNRTIIQ 245 (628)
T ss_dssp ETTTTEEEEEETTTCCSCEEEE
T ss_pred cCCCCEEEEEECCCCCceEEEe
Confidence 4457889999987776544443
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.004 Score=76.50 Aligned_cols=212 Identities=9% Similarity=-0.031 Sum_probs=111.7
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC---cEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE---RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS 412 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~---~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs 412 (1019)
..+.+|+|.+.++.++++-...+.|..+++... ......+.........|++.+ ..+.++++-.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~-------------~~g~LY~tD~ 472 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW-------------IHSNIYWTDS 472 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC-------------SSSBCEECCT
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe-------------eCCcEEEEec
Confidence 356788999876666666667788999988431 111111111111223444443 2335556656
Q ss_pred CCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc-C-CeEEEEECCCCceEEEEecCCceEEEEEecCCC
Q psy307 413 MDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY-D-RYLKLWDTESGECISRFTSRKVAYCVKFHPDED 490 (1019)
Q Consensus 413 ~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~-D-g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~ 490 (1019)
..+.|.+.++. +......+.........|+++|.+.+|+.+.. . +.|.+.++..... .
T Consensus 473 ~~~~I~v~d~d-g~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~------------------ 532 (699)
T 1n7d_A 473 VLGTVSVADTK-GVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-Y------------------ 532 (699)
T ss_dssp TTSCEEEEBSS-SCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-C------------------
T ss_pred cCCeEEEEecC-CCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-e------------------
Confidence 67888888873 33222222222344567788886555444332 2 4555555432111 0
Q ss_pred eeeeccCCCceeeeCCCCCcccEEEEcCCCCEE-EEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCE
Q psy307 491 KQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWL-ACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSY 569 (1019)
Q Consensus 491 ~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~L-asgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~ 569 (1019)
.+..........|+++|++..| ++-+..+.|.++++..... ...+...........+++..+ .+
T Consensus 533 -----------~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~---~~~~~~~~~~~~P~glavd~~-~l 597 (699)
T 1n7d_A 533 -----------SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVFED-KV 597 (699)
T ss_dssp -----------EESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC---EEECCCSSSCSSCCCCEEETT-EE
T ss_pred -----------EEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce---EEEEecCCcCCCceEeEEECC-EE
Confidence 0011112334578899875544 5555667899999865321 111111111122334555443 34
Q ss_pred EEEEeCCCeEEEEeCCCCceeeeeec
Q psy307 570 LISGDADGKCYIWDWKTTKLFKKWKA 595 (1019)
Q Consensus 570 Lasgs~DG~I~IWDl~t~~~l~~l~~ 595 (1019)
+++....+.|..+|..+++.+..+..
T Consensus 598 ywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 598 FWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp EEECSTTTCEEEEETTTEEEEECCCT
T ss_pred EEEeCCCCeEEEEEccCCCceEEeec
Confidence 44445567899999888887776643
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.78 Score=55.14 Aligned_cols=316 Identities=8% Similarity=-0.083 Sum_probs=147.4
Q ss_pred CCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec
Q psy307 297 QGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY 376 (1019)
Q Consensus 297 ~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~ 376 (1019)
.|+.+++-.....|..++..+... ....+..--.....+++.+.++.+.++-...+.|.+.++..... ...+.
T Consensus 51 ~~~ly~sD~~~~~I~r~~~~g~~~------~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~ 123 (619)
T 3s94_A 51 HGLIYWSDVSEEAIKRTEFNKTES------VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFW 123 (619)
T ss_dssp TTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC
T ss_pred CCEEEEEECCCCeEEEEEccCCCc------eEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-EEEEe
Confidence 345555544455555554433210 11223333356889999987777777777889999999844321 11121
Q ss_pred ccCccEeEEEEcCCCCce-e------------------------------EEEeecCCCCcEEEEEeCCCcEEEEEccCC
Q psy307 377 GHRQAVRDICFNNTGTNF-I------------------------------SAIRWFPKSAHLLLSCSMDCRVKLWEVYKE 425 (1019)
Q Consensus 377 gh~~~V~~i~fspdg~~~-v------------------------------s~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~ 425 (1019)
..-.....|++.|.+..+ + .+++..+..+.+.++-+..+.|...|+. +
T Consensus 124 ~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d-G 202 (619)
T 3s94_A 124 QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD-G 202 (619)
T ss_dssp SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS-C
T ss_pred CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC-C
Confidence 223334555655542211 1 1233344444444444445566666652 2
Q ss_pred CeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecC-CceEEEEE-ecCCCe----eeecc--C
Q psy307 426 HRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSR-KVAYCVKF-HPDEDK----QHLDI--P 497 (1019)
Q Consensus 426 ~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~-~~v~~v~~-~p~~~~----~~~~~--~ 497 (1019)
........+......+|++..+ ..+++-...+.|...|..+|+....+... ..+..+.+ +|.... ..... .
T Consensus 203 ~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~ 281 (619)
T 3s94_A 203 TNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGG 281 (619)
T ss_dssp CEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGG
T ss_pred CccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCc
Confidence 2211111211222345566544 33444445678999998888766555433 23444443 332110 00000 0
Q ss_pred CCceeeeCCCCCcccEEE-----EcCC--------CCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEc
Q psy307 498 VDMKYIADPTMHSMPAVT-----SSPN--------NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564 (1019)
Q Consensus 498 ~~~~~i~~~~~~~i~~v~-----~spd--------g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fs 564 (1019)
.....+..+......|.| +.++ ..+|+.+ ..+.|+..++...........+.+ -..+..++|+
T Consensus 282 Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~~~~~~~~---l~~~~~ld~d 357 (619)
T 3s94_A 282 CSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDLRRISLDTPDFTDIVLQLED---IRHAIAIDYD 357 (619)
T ss_dssp CSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCCEECCCSC---CSSEEEEEEE
T ss_pred ccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-cccceEEEecCCCccceeEEeccc---cCccEEEEEE
Confidence 000011111100011111 1111 2234333 356777777765421111111111 1346789999
Q ss_pred CCCCEEEEE-eCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 565 PDMSYLISG-DADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 565 pdg~~Lasg-s~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+.+..|+.+ ...+.|+.+++........+...-....++++.+.++.++++-+..+.|.+.
T Consensus 358 ~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~ 419 (619)
T 3s94_A 358 PVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVT 419 (619)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEE
Confidence 865555544 4578899999876443333332223456777776554566665556666444
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.1 Score=59.92 Aligned_cols=145 Identities=12% Similarity=0.042 Sum_probs=91.0
Q ss_pred cEeEEEEecC--CCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCC---Cc-eeeeC------
Q psy307 438 AVRDICFNNT--GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPV---DM-KYIAD------ 505 (1019)
Q Consensus 438 ~V~sl~fspd--g~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~---~~-~~i~~------ 505 (1019)
....|+|+|+ +..|+.+...+.|+.+|..++...........+..+++++++...+.+... .. .....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~ 219 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT 219 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee
Confidence 3567899984 445555544489999999888776665555678999999998844433211 00 01000
Q ss_pred -----CCCCcccEEEEcC-CCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe-CCCe
Q psy307 506 -----PTMHSMPAVTSSP-NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD-ADGK 578 (1019)
Q Consensus 506 -----~~~~~i~~v~~sp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs-~DG~ 578 (1019)
........++++| +|.++++-..++.|+.++..++.... .+...........++|+|+|++|+.+. ..++
T Consensus 220 ~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~---~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 220 ERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE---EEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp CEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE---EEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred ccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE---EEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 0123345688999 67766666677899999987553211 111111113345799999999655554 5678
Q ss_pred EEEEeCC
Q psy307 579 CYIWDWK 585 (1019)
Q Consensus 579 I~IWDl~ 585 (1019)
|+.++..
T Consensus 297 I~~~~~d 303 (433)
T 4hw6_A 297 IYRVDYN 303 (433)
T ss_dssp EEEEEBC
T ss_pred EEEEeCC
Confidence 9998865
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.22 Score=59.94 Aligned_cols=208 Identities=9% Similarity=0.002 Sum_probs=114.3
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
+.+.+|+|++.++.++.+-...+.|..+++.........+...-.....+++.+.+ +++.++-...+
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~-------------~~ly~~d~~~~ 106 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG-------------EKLYWTDSETN 106 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT-------------TEEEEEETTTT
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC-------------CEEEEEeCCCC
Confidence 45789999997677777767778899998844321122222222456667766644 25666666778
Q ss_pred cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc--CCeEEEEECCCCceEEEEecCCceEEEEEecCCCeee
Q psy307 416 RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY--DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQH 493 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~--Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~ 493 (1019)
.|.+.++.... ........-.....|++.|.+..|+.+.. .+.|...++.........
T Consensus 107 ~I~v~~~dG~~-~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~------------------- 166 (619)
T 3s94_A 107 RIEVSNLDGSL-RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII------------------- 166 (619)
T ss_dssp EEEEEETTSCS-CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-------------------
T ss_pred EEEEEECCCCC-EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE-------------------
Confidence 89999884322 22222234455678899887666555543 244554454322211111
Q ss_pred eccCCCceeeeCCCCCcccEEEEcCCCCEE-EEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEE
Q psy307 494 LDIPVDMKYIADPTMHSMPAVTSSPNNKWL-ACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLIS 572 (1019)
Q Consensus 494 ~~~~~~~~~i~~~~~~~i~~v~~spdg~~L-asgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Las 572 (1019)
.........+++++++..| ++-+..+.|..+++........ ..+.. .....+++..+ ...++
T Consensus 167 -----------~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~---~~~~~--~~P~gi~~~~~-~ly~t 229 (619)
T 3s94_A 167 -----------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAV---VKGSL--PHPFALTLFED-ILYWT 229 (619)
T ss_dssp -----------CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------------CCCEEESSS-EEEEE
T ss_pred -----------eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEE---EeCCC--CCceEEEEeCC-EEEEe
Confidence 1112334567777765444 4445567888888875432211 11111 12345677555 33444
Q ss_pred EeCCCeEEEEeCCCCceeeee
Q psy307 573 GDADGKCYIWDWKTTKLFKKW 593 (1019)
Q Consensus 573 gs~DG~I~IWDl~t~~~l~~l 593 (1019)
-...+.|...|..+++....+
T Consensus 230 d~~~~~V~~~d~~tg~~~~~i 250 (619)
T 3s94_A 230 DWSTHSILACNKYTGEGLREI 250 (619)
T ss_dssp CTTTCSEEEEESSSCCCCEEC
T ss_pred cCCCCEEEEEECCCCcccEEE
Confidence 445678999998887655444
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.12 Score=62.81 Aligned_cols=62 Identities=10% Similarity=0.017 Sum_probs=39.7
Q ss_pred ccEEEEcCCCCEEEEEecC-----------CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC
Q psy307 511 MPAVTSSPNNKWLACQSMD-----------NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA 575 (1019)
Q Consensus 511 i~~v~~spdg~~Lasgs~D-----------g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~ 575 (1019)
..+.+..|+|+++++|+.+ ..+.+||..+.. ......+.... ....+..+.|||+.++.|+.
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~-W~~~~~~~~~R--~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT-FYKQNPNSIVR--VYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE-EEECCCCSSCC--CTTEEEEECTTSCEEEEECC
T ss_pred cCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc-eeecCCCCCcc--ccccHhhcCCCcEEEecCCC
Confidence 4456778899999999864 568999987541 11111111111 22334567799999999885
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.91 Score=49.55 Aligned_cols=219 Identities=9% Similarity=0.082 Sum_probs=119.5
Q ss_pred cCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEee---cCCCCcEEE
Q psy307 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRW---FPKSAHLLL 409 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~---~p~~~~~L~ 409 (1019)
+..----+++|.+..+.++++.-..|+|..|+...+......+.+-. ..-++...++++.| .|. +.+++
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s-------~~g~~~~~~sGl~~~~~D~~-grL~v 81 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGAS-------SNGDGEQQMSGLSLLTHDNS-KRLFA 81 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTC-------CSSCCSEEEEEEEESSSSSC-CEEEE
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCcc-------ccCCCcceeeEEEEeccCCC-CcEEE
Confidence 33334457899886666666666899999999853322111222200 00011122334444 233 35555
Q ss_pred EEe-------------CCCcEEEEEcc---CCCeE-EEEEcccc-----------ccEeEEEEecCCCEEEEEEcC-CeE
Q psy307 410 SCS-------------MDCRVKLWEVY---KEHRC-VRTYYGHR-----------QAVRDICFNNTGTNFISAGYD-RYL 460 (1019)
Q Consensus 410 sgs-------------~Dg~I~IWDl~---~~~~~-~~~l~~H~-----------~~V~sl~fspdg~~l~S~s~D-g~I 460 (1019)
+.. .+..|..+|+. +.... ...+.... .....++..++|+..++++.- +.|
T Consensus 82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I 161 (334)
T 2p9w_A 82 VMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAI 161 (334)
T ss_dssp EEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEE
T ss_pred EEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeE
Confidence 433 26779999985 23322 22232222 348899999999999999888 777
Q ss_pred EEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCc
Q psy307 461 KLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNR 540 (1019)
Q Consensus 461 ~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~ 540 (1019)
...+.... .+..+.... | ........+.++++|+|..|++....|.|..+|+...
T Consensus 162 ~rV~pdG~-~~~~~~~~~--------~----------------~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 162 ARVSADGK-TVSTFAWES--------G----------------NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEECTTSC-CEEEEEECC--------C----------------CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred EEEeCCCC-EEeeeeecC--------C----------------CcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 66665432 222111000 0 0112234678999999998888877999999998843
Q ss_pred ccccceeEEe--ccc-cccceEEE-EEcCCCCE-EEEEeCCCeEEEEeCCC
Q psy307 541 FKLNRKKTFE--GHM-VAGYACSL-DFSPDMSY-LISGDADGKCYIWDWKT 586 (1019)
Q Consensus 541 ~~~~~~~~l~--gh~-~~~~V~~v-~fspdg~~-Lasgs~DG~I~IWDl~t 586 (1019)
... .+. .. |.. .......+ ..-.+|+. |++.+..+.+.+.+...
T Consensus 217 v~~-~v~-~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 217 YAW-PEP-VKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp SCC-CEE-CEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred cce-eec-ccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 210 111 11 211 00112332 33347777 55555566666665443
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.44 Score=52.95 Aligned_cols=203 Identities=14% Similarity=0.161 Sum_probs=101.7
Q ss_pred cEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEE--EEcc-----ccccEeEEEEec--CCC-E
Q psy307 381 AVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVR--TYYG-----HRQAVRDICFNN--TGT-N 450 (1019)
Q Consensus 381 ~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~--~l~~-----H~~~V~sl~fsp--dg~-~ 450 (1019)
..-++...++|.-++++-.|.|.-+.+- ...+|.|.++|+.+...... .+.+ ..-....|.+.+ ++. +
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~--~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFD--PDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-------------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccC--CCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 4556667777643333333333221111 13689999999853221111 2222 223556666655 343 3
Q ss_pred EEEEE-c--CCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEe
Q psy307 451 FISAG-Y--DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQS 527 (1019)
Q Consensus 451 l~S~s-~--Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs 527 (1019)
|+.+. . +.+|.+|++..+.....+ ...+........+.+.+.++|.+.++..
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~-------------------------~~~~~g~~~~~pND~~v~~~G~fyvt~~ 183 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLH-------------------------LKTIRHKLLPSVNDIVAVGPEHFYATND 183 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEE-------------------------EEEECCTTCSSEEEEEEEETTEEEEEES
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEE-------------------------EeccccCCCCCCceEEEeCCCCEEecCC
Confidence 33332 2 345666665432111110 0011112234456677777777666553
Q ss_pred -----------------cCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe-CCCeEEEEeCCC-Cc
Q psy307 528 -----------------MDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD-ADGKCYIWDWKT-TK 588 (1019)
Q Consensus 528 -----------------~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl~t-~~ 588 (1019)
..|.|..+|.. .. .....+- ...+.++|||||++|+.+. ..+.|+.|++.. ++
T Consensus 184 ~~ftd~~~~~~e~~~~~~~g~vyr~d~~---~~--~~~~~~l---~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~ 255 (355)
T 3sre_A 184 HYFIDPYLKSWEMHLGLAWSFVTYYSPN---DV--RVVAEGF---DFANGINISPDGKYVYIAELLAHKIHVYEKHANWT 255 (355)
T ss_dssp CSCSSHHHHHHHHHTTCCCEEEEEECTT---CC--EEEEEEE---SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred cEeCCcccccchhhccCCccEEEEEECC---eE--EEeecCC---cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCc
Confidence 12455555542 11 1122222 4478999999998877665 467899999863 33
Q ss_pred e--eeeeeccCCCEEEEEEcC-CCCcEEEEEeCCC
Q psy307 589 L--FKKWKAHDGVCISTLWHP-HEPSKVVTAGWDA 620 (1019)
Q Consensus 589 ~--l~~l~~h~~~V~sl~~sp-~~~~~l~s~s~Dg 620 (1019)
+ ...+ ...+..-.++..+ +| .+.+++.++|
T Consensus 256 l~~~~~~-~~~g~PDGi~vD~e~G-~lwva~~~~g 288 (355)
T 3sre_A 256 LTPLRVL-SFDTLVDNISVDPVTG-DLWVGCHPNG 288 (355)
T ss_dssp EEEEEEE-ECSSEEEEEEECTTTC-CEEEEEESCH
T ss_pred EecCEEE-eCCCCCceEEEeCCCC-cEEEEecCCc
Confidence 2 2233 2245567788887 46 4666566554
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.096 Score=60.14 Aligned_cols=152 Identities=11% Similarity=0.125 Sum_probs=90.6
Q ss_pred cEeEEEEec-CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEE
Q psy307 438 AVRDICFNN-TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTS 516 (1019)
Q Consensus 438 ~V~sl~fsp-dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~ 516 (1019)
....|+++| ++..|+.+...+.|+.+|+.++......... .....+++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~-------------------------------~~P~~ia~ 186 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGL-------------------------------SKVRTICW 186 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCC-------------------------------SCEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCC-------------------------------CCcceEEE
Confidence 456779997 4555666665578888888776543332221 23345677
Q ss_pred cCCCCEEEEEec-CC----eEEEEEccCcccccceeEEeccccccceEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcee
Q psy307 517 SPNNKWLACQSM-DN----KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP-DMSYLISGDADGKCYIWDWKTTKLF 590 (1019)
Q Consensus 517 spdg~~Lasgs~-Dg----~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp-dg~~Lasgs~DG~I~IWDl~t~~~l 590 (1019)
+++|++|++... ++ .+.+++...... ....+... .....++++| +|.++++-..++.|+.++..++...
T Consensus 187 d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~--~~~~l~~~---~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~ 261 (430)
T 3tc9_A 187 THEADSMIITNDQNNNDRPNNYILTRESGFK--VITELTKG---QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT 261 (430)
T ss_dssp CTTSSEEEEEECCSCTTSEEEEEEEGGGTSC--SEEEEEEC---SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE
T ss_pred eCCCCEEEEEeCCCCcccceEEEEeCCCcee--eeeeeccC---CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 777875555443 22 344444433221 11222211 2355788999 7776666667889999999876542
Q ss_pred eeeec-cCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 591 KKWKA-HDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 591 ~~l~~-h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
..... .......++|+|++..++++-...++|.++
T Consensus 262 ~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~ 297 (430)
T 3tc9_A 262 PLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRS 297 (430)
T ss_dssp EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEE
Confidence 22221 123467999999995456666666777665
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.21 E-value=1 Score=55.68 Aligned_cols=217 Identities=10% Similarity=-0.065 Sum_probs=116.9
Q ss_pred CCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC---eEEEEEc
Q psy307 357 DCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH---RCVRTYY 433 (1019)
Q Consensus 357 Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~---~~~~~l~ 433 (1019)
...|+..++... ...... .....+..|+|.+. .+.++++-...+.|+.+++.... .....+.
T Consensus 403 ~~~Ir~i~l~~~-~~~~l~-~~~~~~~gl~~d~~-------------~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~ 467 (791)
T 3m0c_C 403 RHEVRKMTLDRS-EYTSLI-PNLRNVVALDTEVA-------------SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 467 (791)
T ss_dssp BSSEEEECTTSC-CCEEEE-CSCSSEEEEEEETT-------------TTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred ccceeEeeccCC-cceeee-cCCCceEEEeeccc-------------CCeeEEeeccceeEEEEeccCCCCCcceeEEEe
Confidence 345666666322 222222 22344555666553 33566666667888888884321 2233333
Q ss_pred cccccEeEEEEecCCCEEE-EEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCccc
Q psy307 434 GHRQAVRDICFNNTGTNFI-SAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMP 512 (1019)
Q Consensus 434 ~H~~~V~sl~fspdg~~l~-S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~ 512 (1019)
........|++.+.++.|+ +-...+.|.+.++........+.. ......
T Consensus 468 ~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~------------------------------~l~~P~ 517 (791)
T 3m0c_C 468 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE------------------------------NGSKPR 517 (791)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC------------------------------TTCCEE
T ss_pred cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeC------------------------------CCCCcc
Confidence 3445677889988776554 444567888888865443222211 112234
Q ss_pred EEEEcCCCCEEEEEe-cC-CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCce
Q psy307 513 AVTSSPNNKWLACQS-MD-NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA-DGKCYIWDWKTTKL 589 (1019)
Q Consensus 513 ~v~~spdg~~Lasgs-~D-g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~-DG~I~IWDl~t~~~ 589 (1019)
.|+++|.+.+|+... .. +.|.+.++..... ...+... -.....|++++.+..|+.+.. .+.|...++.....
T Consensus 518 gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~---~~lv~~~--l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~ 592 (791)
T 3m0c_C 518 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 592 (791)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSCCE---EEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred eEEEecCCCCEEEecCCCCCeEEEEecCCCce---EEEEeCC--CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce
Confidence 566676644444443 22 6788888765422 1122222 145789999987777766654 56899999865444
Q ss_pred eeeeecc--CCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 590 FKKWKAH--DGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 590 l~~l~~h--~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
...+... -....+|+.. +..++++-...+.|...
T Consensus 593 ~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~ 628 (791)
T 3m0c_C 593 KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSA 628 (791)
T ss_dssp EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred EEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEE
Confidence 3333321 1234566654 33455555555566544
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=2.8 Score=50.31 Aligned_cols=206 Identities=11% Similarity=0.004 Sum_probs=113.2
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecc------cCccEeEEEEcCCCCceeEEEeecCCCCcEEE
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG------HRQAVRDICFNNTGTNFISAIRWFPKSAHLLL 409 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g------h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~ 409 (1019)
+.+.+|+|.+.++.++.+=...+.|+.++...... ...+.. ....+..+++...+ .++.+
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~-~~v~~~~~~~~~~~~~p~glAvD~~~-------------~nLY~ 405 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG-FTVVVSSVPSQNLEIQPYDLSIDIYS-------------RYIYW 405 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC--------CCCEEEEEEETTT-------------TEEEE
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCc-eEEEEcccccccccCCcceEEeeccC-------------CeEEE
Confidence 45889999997677777767788899888743321 111211 12345666666554 25666
Q ss_pred EEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec-CCCEEEEEEcCC--eEEEEECCCCceEEEEecCCceEEEEEe
Q psy307 410 SCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN-TGTNFISAGYDR--YLKLWDTESGECISRFTSRKVAYCVKFH 486 (1019)
Q Consensus 410 sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp-dg~~l~S~s~Dg--~I~lWDl~t~~~i~~~~~~~~v~~v~~~ 486 (1019)
+-+..+.|.+.++. +......+........+|++.| .|.++++-.... .|...++.........
T Consensus 406 td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~------------ 472 (628)
T 4a0p_A 406 TCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLF------------ 472 (628)
T ss_dssp EETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEE------------
T ss_pred EcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEE------------
Confidence 76777888888873 3322223333456688999999 454455533322 3444444322211111
Q ss_pred cCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE-ecCCeEEEEEccCcccccceeEEe-ccccccceEEEEEc
Q psy307 487 PDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ-SMDNKILIFSALNRFKLNRKKTFE-GHMVAGYACSLDFS 564 (1019)
Q Consensus 487 p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg-s~Dg~I~iwd~~~~~~~~~~~~l~-gh~~~~~V~~v~fs 564 (1019)
.........+++++.++.|..+ +..+.|..+++.... .+.+. +.. ....++++.
T Consensus 473 ------------------~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~----r~~~~~~~~--~~P~glav~ 528 (628)
T 4a0p_A 473 ------------------FSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN----RIVLEDSNI--LQPVGLTVF 528 (628)
T ss_dssp ------------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----CEEEECSSC--SCEEEEEEE
T ss_pred ------------------eccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc----eEEEEcCCC--CCcEEEEEE
Confidence 1112344567888876666555 446789999986542 12222 211 234566654
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeeee
Q psy307 565 PDMSYLISGDADGKCYIWDWKTTKLFKKW 593 (1019)
Q Consensus 565 pdg~~Lasgs~DG~I~IWDl~t~~~l~~l 593 (1019)
. +.+..+=...+.|...|..+|+....+
T Consensus 529 ~-~~ly~tD~~~~~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 529 E-NWLYWIDKQQQMIEKIDMTGREGRTKV 556 (628)
T ss_dssp T-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred C-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence 3 333333334456666666666554444
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.11 E-value=1.5 Score=48.62 Aligned_cols=68 Identities=12% Similarity=0.025 Sum_probs=44.1
Q ss_pred ceEEEEEcC-------CCCEEEEEeCCCeEEEEeCCCCceeee--e-eccCCCEEEEEEcCCCCcEEEE-EeCCCcEEEE
Q psy307 557 YACSLDFSP-------DMSYLISGDADGKCYIWDWKTTKLFKK--W-KAHDGVCISTLWHPHEPSKVVT-AGWDAATAKV 625 (1019)
Q Consensus 557 ~V~~v~fsp-------dg~~Lasgs~DG~I~IWDl~t~~~l~~--l-~~h~~~V~sl~~sp~~~~~l~s-~s~Dg~I~iw 625 (1019)
.++.+.|.. +|.++++.-..+.|...++..++.... + ......+..+++.|+|. ++++ -..+|.|.++
T Consensus 272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~-lyv~td~~~g~I~ri 350 (353)
T 2g8s_A 272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY-LYVLTDESSGELLKV 350 (353)
T ss_dssp CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC-EEEEECSTTEEEEEE
T ss_pred CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc-EEEEEeCCCCEEEEE
Confidence 466777764 577777776778888888776544332 1 22234789999999985 5444 3356766554
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.77 Score=53.27 Aligned_cols=161 Identities=15% Similarity=0.154 Sum_probs=87.1
Q ss_pred EEeecCC-CCcEEEEEeCCCcEEEEEccCCCeEEEEEccc---cccEeEEEE-------ecCCCEEEEEEcCC-------
Q psy307 397 AIRWFPK-SAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGH---RQAVRDICF-------NNTGTNFISAGYDR------- 458 (1019)
Q Consensus 397 ~i~~~p~-~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H---~~~V~sl~f-------spdg~~l~S~s~Dg------- 458 (1019)
.+++.|. ..+++++....+.|++.|+ ..+......... ......|+| +++|++|+.+...+
T Consensus 143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~-~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~ 221 (496)
T 3kya_A 143 RLAFDPLNKDHLYICYDGHKAIQLIDL-KNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESP 221 (496)
T ss_dssp EEEEETTEEEEEEEEEETEEEEEEEET-TTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEE
T ss_pred EEEEccCCCCEEEEEECCCCeEEEEEC-CCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCc
Confidence 3455553 3344555444567888887 444444433322 235889999 99999777666553
Q ss_pred eEEEEECCC-CceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC-CCEEEEEecCCeEEEEE
Q psy307 459 YLKLWDTES-GECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN-NKWLACQSMDNKILIFS 536 (1019)
Q Consensus 459 ~I~lWDl~t-~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd-g~~Lasgs~Dg~I~iwd 536 (1019)
.|.+.+... +... .. ++ ...+. .......++++|+ +.++++-..++.|..+|
T Consensus 222 ~V~~i~r~~~G~~~----~~---------~~-----------~~~v~--~~~~p~giavdp~~g~LYvtd~~~g~V~r~d 275 (496)
T 3kya_A 222 SVYIIKRNADGTFD----DR---------SD-----------IQLIA--AYKQCNGATIHPINGELYFNSYEKGQVFRLD 275 (496)
T ss_dssp EEEEEECCTTSCCS----TT---------SC-----------EEEEE--EESCCCCEEECTTTCCEEEEETTTTEEEEEC
T ss_pred eEEEEecCCCCcee----ec---------cc-----------ceeec--cCCCceEEEEcCCCCeEEEEECCCCEEEEEe
Confidence 244554322 1110 00 00 00000 0122346788884 55566667788999999
Q ss_pred cc-------Ccccc-----c---ceeEEeccccccceEEEEEcCCCCEEEEEe-CCCeEEEEeC
Q psy307 537 AL-------NRFKL-----N---RKKTFEGHMVAGYACSLDFSPDMSYLISGD-ADGKCYIWDW 584 (1019)
Q Consensus 537 ~~-------~~~~~-----~---~~~~l~gh~~~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl 584 (1019)
+. ++... . ....+...........++|+|+|++|+.++ ...+|+.++.
T Consensus 276 ~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 276 LVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp HHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred cccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 87 44220 0 011111111124467899999999655554 5678888654
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=95.88 E-value=1.1 Score=49.49 Aligned_cols=177 Identities=9% Similarity=0.148 Sum_probs=103.9
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEec---------------C-----CCeeeeccC---CCceee
Q psy307 447 TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHP---------------D-----EDKQHLDIP---VDMKYI 503 (1019)
Q Consensus 447 dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p---------------~-----~~~~~~~~~---~~~~~i 503 (1019)
....++.....+-+.++|+ +|+.++.+.. ..++.+..-| + ....++.+. .....+
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 4456777777888999999 8888887764 2333333222 1 112223221 111222
Q ss_pred eC---C--C-CCcccEEEE--cCC-CC-EEEEEecCCeEEEEEccCc----ccccceeEEeccccccceEEEEEcCCCCE
Q psy307 504 AD---P--T-MHSMPAVTS--SPN-NK-WLACQSMDNKILIFSALNR----FKLNRKKTFEGHMVAGYACSLDFSPDMSY 569 (1019)
Q Consensus 504 ~~---~--~-~~~i~~v~~--spd-g~-~Lasgs~Dg~I~iwd~~~~----~~~~~~~~l~gh~~~~~V~~v~fspdg~~ 569 (1019)
.. + . ...+..+|+ +|. +. ++++...+|.+..|++... .....+..+.-. +.+-.|...+...+
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg---sq~EgcvvDd~~g~ 193 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN---SQTEGMAADDEYGR 193 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS---SCEEEEEEETTTTE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC---CCcceEEEcCCCCe
Confidence 11 1 1 145666888 774 43 6888888999999998532 122334444432 45778899998899
Q ss_pred EEEEeCCCeEEEEeCC-----CCceeeeee-cc-CCCEEEEEE--cCCCCcEEEEEe-CCCcEEEEeccc
Q psy307 570 LISGDADGKCYIWDWK-----TTKLFKKWK-AH-DGVCISTLW--HPHEPSKVVTAG-WDAATAKVQDAN 629 (1019)
Q Consensus 570 Lasgs~DG~I~IWDl~-----t~~~l~~l~-~h-~~~V~sl~~--sp~~~~~l~s~s-~Dg~I~iwwd~~ 629 (1019)
|+.+-.+.-|..++.. +++.+..+. ++ ...+..++. .+++..+|++++ .+++. .+++..
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~-~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSY-AIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEE-EEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEE-EEEECC
Confidence 9999998777777754 345565543 22 236788877 455543455555 45455 555553
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.51 Score=52.37 Aligned_cols=61 Identities=10% Similarity=0.013 Sum_probs=36.9
Q ss_pred ccEEEEcCCCCEEEEEecCCeEEEEEccCccc---ccceeEEeccccccceEEEEEcCCCCEEEEEe
Q psy307 511 MPAVTSSPNNKWLACQSMDNKILIFSALNRFK---LNRKKTFEGHMVAGYACSLDFSPDMSYLISGD 574 (1019)
Q Consensus 511 i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~---~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs 574 (1019)
...+++ .+|.++++....+.|...++..... ......+... ...+..+++.|||.+.++..
T Consensus 270 p~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~--~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 270 PGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG--FGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp EEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES--SCCEEEEEECTTSCEEEEEC
T ss_pred CcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc--CCCeeEEEECCCCcEEEEEe
Confidence 445666 4677777766777888887764421 1111222111 25688999999998766654
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.58 Score=51.27 Aligned_cols=194 Identities=8% Similarity=-0.013 Sum_probs=98.3
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeE-EEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRV-KLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD 414 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I-~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D 414 (1019)
+.+.+|.+.++ +.+++++ .+|.| +-+|--..... ...++...+..+.+.+++ .+++.+ .+
T Consensus 122 ~~~~~i~~~~~-~~~~~~~-~~g~v~~S~DgG~tW~~--~~~~~~~~~~~~~~~~~~--------------~~~~~g-~~ 182 (327)
T 2xbg_A 122 GSPRLIKALGN-GSAEMIT-NVGAIYRTKDSGKNWQA--LVQEAIGVMRNLNRSPSG--------------EYVAVS-SR 182 (327)
T ss_dssp SCEEEEEEEET-TEEEEEE-TTCCEEEESSTTSSEEE--EECSCCCCEEEEEECTTS--------------CEEEEE-TT
T ss_pred CCeEEEEEECC-CCEEEEe-CCccEEEEcCCCCCCEE--eecCCCcceEEEEEcCCC--------------cEEEEE-CC
Confidence 45677877664 5555555 45544 33332111222 223445567778777766 445444 34
Q ss_pred CcEE-EEEc-cCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCee
Q psy307 415 CRVK-LWEV-YKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQ 492 (1019)
Q Consensus 415 g~I~-IWDl-~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~ 492 (1019)
|.+. -+|- -..-..+ -......+..+.+.++++.+ .++.+|.+.+++...|+.-..+... .
T Consensus 183 G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~----------~---- 245 (327)
T 2xbg_A 183 GSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSP----------L---- 245 (327)
T ss_dssp SSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCT----------T----
T ss_pred CcEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCC----------c----
Confidence 4433 3332 0111222 23455678889999888654 5667787777643222211111000 0
Q ss_pred eeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEecc-ccccceEEEEEcCCCCEEE
Q psy307 493 HLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGH-MVAGYACSLDFSPDMSYLI 571 (1019)
Q Consensus 493 ~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh-~~~~~V~~v~fspdg~~La 571 (1019)
......+..+.+.+++..++++. +|.| .+....+... ..+... .....+.++.|.+++. ++
T Consensus 246 ------------~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW---~~~~~~~~~~~~~~~v~~~~~~~-~~ 307 (327)
T 2xbg_A 246 ------------RRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTW---QQDVDVKKVPSNFYKILFFSPDQ-GF 307 (327)
T ss_dssp ------------SSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSC---EECGGGTTSSSCCCEEEEEETTE-EE
T ss_pred ------------ccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCccc---EEcCccCCCCCCeEEEEEECCCc-eE
Confidence 00112355677777777666654 6766 3444444222 222211 0113456788876655 55
Q ss_pred EEeCCCeEEEEe
Q psy307 572 SGDADGKCYIWD 583 (1019)
Q Consensus 572 sgs~DG~I~IWD 583 (1019)
+++.+|.|.-++
T Consensus 308 ~~G~~G~i~~~~ 319 (327)
T 2xbg_A 308 ILGQKGILLRYV 319 (327)
T ss_dssp EECSTTEEEEEC
T ss_pred EEcCCceEEEEc
Confidence 566788877665
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=3 Score=46.13 Aligned_cols=222 Identities=8% Similarity=-0.012 Sum_probs=117.1
Q ss_pred ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEc---cccccEeEEEEecC---CCEEEE
Q psy307 380 QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYY---GHRQAVRDICFNNT---GTNFIS 453 (1019)
Q Consensus 380 ~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~---~H~~~V~sl~fspd---g~~l~S 453 (1019)
.....++|.|+| . |+.+..+|.|++++. .....+..+. ........|+++|+ +..|+.
T Consensus 29 ~~P~~ia~~pdG--------------~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv 92 (354)
T 3a9g_A 29 EVPWSIAPLGGG--------------R-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYL 92 (354)
T ss_dssp SCEEEEEEEETT--------------E-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEE
T ss_pred CCCeEEEEcCCC--------------e-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEE
Confidence 345678888887 3 555666799998874 2222222221 12356889999997 445544
Q ss_pred EEc----C----CeEEEEECCCC--c-----eE-EEEec--CCceEEEEEecCCCeeeeccCC------------Ccee-
Q psy307 454 AGY----D----RYLKLWDTESG--E-----CI-SRFTS--RKVAYCVKFHPDEDKQHLDIPV------------DMKY- 502 (1019)
Q Consensus 454 ~s~----D----g~I~lWDl~t~--~-----~i-~~~~~--~~~v~~v~~~p~~~~~~~~~~~------------~~~~- 502 (1019)
+.. + ..|..|+...+ . .+ ..+.. ......+.|.|++...+..-.. ..+.
T Consensus 93 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ 172 (354)
T 3a9g_A 93 YASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKIL 172 (354)
T ss_dssp EEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEE
T ss_pred EEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEE
Confidence 432 3 56777876654 1 11 11221 1235678999988644331100 0111
Q ss_pred eeCCC------------------CCcccEEEEcC-CCCEEEEEecCC---eEEEEEccCcc--c-----------cccee
Q psy307 503 IADPT------------------MHSMPAVTSSP-NNKWLACQSMDN---KILIFSALNRF--K-----------LNRKK 547 (1019)
Q Consensus 503 i~~~~------------------~~~i~~v~~sp-dg~~Lasgs~Dg---~I~iwd~~~~~--~-----------~~~~~ 547 (1019)
...+. ......++|+| +|.++++-...+ .|.+....... . .....
T Consensus 173 ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 252 (354)
T 3a9g_A 173 RVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVI 252 (354)
T ss_dssp EECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred EEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEe
Confidence 11111 12245788888 566555443222 24433221100 0 01111
Q ss_pred EEeccccccceEEEEEc-------CCCCEEEEEeCCCeEEEEeCCCC-cee--eeee-ccCCCEEEEEEcCCCCcEEEEE
Q psy307 548 TFEGHMVAGYACSLDFS-------PDMSYLISGDADGKCYIWDWKTT-KLF--KKWK-AHDGVCISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 548 ~l~gh~~~~~V~~v~fs-------pdg~~Lasgs~DG~I~IWDl~t~-~~l--~~l~-~h~~~V~sl~~sp~~~~~l~s~ 616 (1019)
.+. + ....+..++|. .+|.++++.-..+.|...++... +.. ..+- .....+.++++.|+| .++++.
T Consensus 253 ~~~-~-~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG-~lyv~~ 329 (354)
T 3a9g_A 253 DTG-S-ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDG-GILIST 329 (354)
T ss_dssp ECT-T-CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTS-CEEEEE
T ss_pred ecC-C-CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCC-cEEEEE
Confidence 120 1 11347788883 57777777767788888888753 332 2222 224578999999998 455554
Q ss_pred e-CCC
Q psy307 617 G-WDA 620 (1019)
Q Consensus 617 s-~Dg 620 (1019)
. .+|
T Consensus 330 ~~~~G 334 (354)
T 3a9g_A 330 SNRDG 334 (354)
T ss_dssp CTTSS
T ss_pred eCCCC
Confidence 3 344
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=1.6 Score=48.39 Aligned_cols=73 Identities=11% Similarity=0.244 Sum_probs=46.9
Q ss_pred cccEEEEcCCCCEEEEE-ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcC-CCCEEEEEeCC-CeEEEEeCC
Q psy307 510 SMPAVTSSPNNKWLACQ-SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP-DMSYLISGDAD-GKCYIWDWK 585 (1019)
Q Consensus 510 ~i~~v~~spdg~~Lasg-s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp-dg~~Lasgs~D-G~I~IWDl~ 585 (1019)
..+.++|+||++.|..+ +..+.|..|++.....+.....+.. .+..-.+++.+ +|++.+++..+ +.|..|+..
T Consensus 222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~---~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 222 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF---DTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC---SSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC---CCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 34578899999777665 4678999999864323333334421 25677899999 59877766544 345555543
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=95.42 E-value=6 Score=51.04 Aligned_cols=185 Identities=7% Similarity=0.103 Sum_probs=107.8
Q ss_pred CCcEEEEEe----------CCCcEEEEEccCCCeEEEEE-ccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEE
Q psy307 404 SAHLLLSCS----------MDCRVKLWEVYKEHRCVRTY-YGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECIS 472 (1019)
Q Consensus 404 ~~~~L~sgs----------~Dg~I~IWDl~~~~~~~~~l-~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~ 472 (1019)
...+|+.|. ..|.|.++++. ..+..... ....++|++++-- +| +|++| ...+|++|++...+.+.
T Consensus 843 ~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~-~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~ 918 (1158)
T 3ei3_A 843 PNTYFIVGTAMVYPEEAEPKQGRIVVFQYS-DGKLQTVAEKEVKGAVYSMVEF-NG-KLLAS-INSTVRLYEWTTEKELR 918 (1158)
T ss_dssp CCCEEEEEEEECCTTCSSCCCEEEEEEEEE-TTEEEEEEEEEESSCEEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCEE
T ss_pred CCEEEEEEeeecCCCCCCCCceEEEEEEEE-CCEEEEEEEEEcCCcCEEEeee-CC-EEEEE-cCCEEEEEECCCCceEE
Confidence 346777776 35889999995 33332222 2346888888744 45 45444 45899999997665433
Q ss_pred EEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEecc
Q psy307 473 RFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGH 552 (1019)
Q Consensus 473 ~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh 552 (1019)
.. + ... ..+..+.+...++++++|..-..|.++..+.. ...+..+..+
T Consensus 919 -~~------~-~~~----------------------~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~--~~~L~~~a~D 966 (1158)
T 3ei3_A 919 -TE------C-NHY----------------------NNIMALYLKTKGDFILVGDLMRSVLLLAYKPM--EGNFEEIARD 966 (1158)
T ss_dssp -EE------E-EEC----------------------CCSCEEEEEEETTEEEEEESSBCEEEEEEETT--TTEEEEEEEC
T ss_pred -EE------e-ecc----------------------ccEEEEEEeccCCEEEEEEhhheEEEEEEEcC--CCeEEEEEee
Confidence 11 0 000 01222233335778888887777766654322 1233444444
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCC--------CceeeeeeccC-CCEEEEE---EcCCC--------CcE
Q psy307 553 MVAGYACSLDFSPDMSYLISGDADGKCYIWDWKT--------TKLFKKWKAHD-GVCISTL---WHPHE--------PSK 612 (1019)
Q Consensus 553 ~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t--------~~~l~~l~~h~-~~V~sl~---~sp~~--------~~~ 612 (1019)
....+++++.+-.++ .++.++.+|.|.+..... .++...-.-|- ..|+++. +.+.+ ...
T Consensus 967 ~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~ 1045 (1158)
T 3ei3_A 967 FNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGS 1045 (1158)
T ss_dssp CSCBCEEEEEEEETT-EEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEE
T ss_pred cccccEEEEEEEccC-cEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccce
Confidence 455778888887554 677799999999987643 12222222333 3566664 33322 235
Q ss_pred EEEEeCCCcEEEE
Q psy307 613 VVTAGWDAATAKV 625 (1019)
Q Consensus 613 l~s~s~Dg~I~iw 625 (1019)
++-++.+|.|..+
T Consensus 1046 il~~T~~GsIg~l 1058 (1158)
T 3ei3_A 1046 VLFGTVNGMIGLV 1058 (1158)
T ss_dssp EEEEETTSCEEEE
T ss_pred EEEEecCCEEEEE
Confidence 7778888888765
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.33 E-value=4.4 Score=44.68 Aligned_cols=234 Identities=9% Similarity=0.038 Sum_probs=116.1
Q ss_pred ceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcE-EEEEe----cccCccEeEEEEcCCCCceeEEEeec
Q psy307 327 QVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERR-CVRTY----YGHRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 327 ~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~-~~~~~----~gh~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
.+.++-..-...+.|+|.|+ +.++++--..|.|++++...... .+..+ .........|+++|+-.
T Consensus 23 ~~~~va~gL~~P~~ia~~pd-G~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~--------- 92 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLPG-GDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYA--------- 92 (347)
T ss_dssp EEEEEECCCSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHH---------
T ss_pred eeEEeecCCCCceEEEEcCC-CcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccc---------
Confidence 34444444557789999996 67666655589999998632221 22222 12234567777777410
Q ss_pred CCCCcEEEEE--eCCCcEEEEEccCC---------CeE-EEEEc-cccccEeEEEEecCCCEEEEEEc------------
Q psy307 402 PKSAHLLLSC--SMDCRVKLWEVYKE---------HRC-VRTYY-GHRQAVRDICFNNTGTNFISAGY------------ 456 (1019)
Q Consensus 402 p~~~~~L~sg--s~Dg~I~IWDl~~~---------~~~-~~~l~-~H~~~V~sl~fspdg~~l~S~s~------------ 456 (1019)
.++.+.++- ..++.|.-|.+... .+. +..+. +....-..|.|.|||.++++.+.
T Consensus 93 -~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~ 171 (347)
T 3das_A 93 -SDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKS 171 (347)
T ss_dssp -HHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTC
T ss_pred -cCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCC
Confidence 011222221 23344555554321 111 22222 12233467899999988777552
Q ss_pred -CCeEEEEECCCCc-------eEEEEe-cCCceEEEEEecCCCeeeeccCCC----ceeee-------------------
Q psy307 457 -DRYLKLWDTESGE-------CISRFT-SRKVAYCVKFHPDEDKQHLDIPVD----MKYIA------------------- 504 (1019)
Q Consensus 457 -Dg~I~lWDl~t~~-------~i~~~~-~~~~v~~v~~~p~~~~~~~~~~~~----~~~i~------------------- 504 (1019)
-|.|.-.+....- ....+. ....+..++|+|++.....+.... ...+.
T Consensus 172 ~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~ 251 (347)
T 3das_A 172 LGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGF 251 (347)
T ss_dssp STTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTC
T ss_pred CCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccc
Confidence 2455545544220 001122 345677899999765444322110 00000
Q ss_pred -------CCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCccccc-ceeEEeccccccceEEEEEcCCCCEEEEEe
Q psy307 505 -------DPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLN-RKKTFEGHMVAGYACSLDFSPDMSYLISGD 574 (1019)
Q Consensus 505 -------~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~-~~~~l~gh~~~~~V~~v~fspdg~~Lasgs 574 (1019)
.++......++|. +|..+...-..+.|....+....... ....+.+. .+.+..|+..|||.++++.+
T Consensus 252 ~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~--~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 252 HDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGE--YGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTT--SSCEEEEEEEETTEEEEEEC
T ss_pred cCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCC--CCCccEEEECCCCcEEEEEc
Confidence 0000122344554 35555555556667666665432111 11222222 25688899999988666543
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=95.19 E-value=11 Score=48.52 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=47.3
Q ss_pred CCCeEEEEEcCCC-----CcEEEEeeC-CCeEEEEecCCCcEEEEEec-ccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 335 TKGISAIRWFPKS-----AHLLLSCSM-DCRVKLWEVYKERRCVRTYY-GHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 335 ~~~V~~i~fspd~-----g~lLaSgs~-Dg~I~IWdl~~~~~~~~~~~-gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
.+.|+|+++.|.. +.+++.|.. |++|+|+++.. .+.+.... +......++.+.. + .+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~-l~~~~~~~L~~~~~p~si~l~~----------~--~~~~~ 619 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS-FELLHKEMLGGEIIPRSILMTT----------F--ESSHY 619 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT-CCEEEEEECCSSCCEEEEEEEE----------E--TTEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC-CCeEEEEECCCCCCCcEEEEEE----------e--CCCcE
Confidence 4579999998642 478999997 99999999953 33332211 1112233333221 1 12257
Q ss_pred EEEEeCCCcEEEEEcc
Q psy307 408 LLSCSMDCRVKLWEVY 423 (1019)
Q Consensus 408 L~sgs~Dg~I~IWDl~ 423 (1019)
|..|-.||.+.-+.+.
T Consensus 620 L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 620 LLCALGDGALFYFGLN 635 (1158)
T ss_dssp EEEEETTSEEEEEEEC
T ss_pred EEEEeCCCeEEEEEEc
Confidence 8899999998776664
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=94.79 E-value=1.7 Score=48.87 Aligned_cols=116 Identities=12% Similarity=0.028 Sum_probs=78.2
Q ss_pred cccEEEEcCCCCEEEEEecCCeEEEEEccCccccc---------ceeEEecc----ccccceEEEEEcCC---CCEEEEE
Q psy307 510 SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLN---------RKKTFEGH----MVAGYACSLDFSPD---MSYLISG 573 (1019)
Q Consensus 510 ~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~---------~~~~l~gh----~~~~~V~~v~fspd---g~~Lasg 573 (1019)
.+..+..+|+|++||..+ +..|.|..+-.+.... ..+.+.-. .....|..+.|+|- |..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 577799999999998886 5688888776321100 11222211 12367999999994 5689999
Q ss_pred eCCCeEEEEeCCCC--ceeeeee---------ccCCCEEEEEEcCCCCcEEEEEe--CCCcEEEEecc
Q psy307 574 DADGKCYIWDWKTT--KLFKKWK---------AHDGVCISTLWHPHEPSKVVTAG--WDAATAKVQDA 628 (1019)
Q Consensus 574 s~DG~I~IWDl~t~--~~l~~l~---------~h~~~V~sl~~sp~~~~~l~s~s--~Dg~I~iwwd~ 628 (1019)
..|+.|++||+... ++. .++ .....|.+++|.+++ ..|...+ .+|.|+-++..
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~-lTLYvl~~t~~GDIYAlcP~ 211 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDG-LTLYCLNTTEGGDIFAFYPF 211 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTS-SCEEEEECTTSCEEEEESSC
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCC-cEEEEEecCCCCCEEEECCC
Confidence 99999999999752 122 222 122568899999965 6666644 88899877544
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=94.69 E-value=3.7 Score=45.38 Aligned_cols=68 Identities=10% Similarity=0.076 Sum_probs=40.8
Q ss_pred cccEEEEcC-------CCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe-CCCeE
Q psy307 510 SMPAVTSSP-------NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD-ADGKC 579 (1019)
Q Consensus 510 ~i~~v~~sp-------dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs-~DG~I 579 (1019)
....+++.. +|.++++....+.|...++..+..... ..+-. .....+..+++.|||.+.++.+ .+|.|
T Consensus 272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~-~~~~~-~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTED-GRILT-DRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEE-EEESG-GGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeee-EEccc-CCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 445566643 577777777788888888875422111 12211 1124688999999998666543 34543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.61 E-value=8.3 Score=44.19 Aligned_cols=110 Identities=8% Similarity=0.100 Sum_probs=56.1
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-EEEEEecc------cCccEeEEEEcCCCCceeEEEeecCCCCcEE
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-RCVRTYYG------HRQAVRDICFNNTGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~~~~~~~g------h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L 408 (1019)
....+|+|.|+ +.++++-...+.|++++..... ..+..+.. .......|+|+|+-. .++.+.
T Consensus 27 ~~P~~~a~~pd-G~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~----------~~g~lY 95 (454)
T 1cru_A 27 NKPHALLWGPD-NQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFK----------NNPYIY 95 (454)
T ss_dssp SSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTT----------TSCEEE
T ss_pred CCceEEEEcCC-CcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcC----------cCCEEE
Confidence 35679999996 6666654444578888753222 22222221 134455677776410 022333
Q ss_pred EEEeC------------CCcEEEEEccCCC------e-EEEEEc-cccccEeEEEEecCCCEEEEEEc
Q psy307 409 LSCSM------------DCRVKLWEVYKEH------R-CVRTYY-GHRQAVRDICFNNTGTNFISAGY 456 (1019)
Q Consensus 409 ~sgs~------------Dg~I~IWDl~~~~------~-~~~~l~-~H~~~V~sl~fspdg~~l~S~s~ 456 (1019)
++-+. ...|.-|++.... + .+..+. ........|+|.|||.++++.+.
T Consensus 96 v~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred EEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 33322 1245555542211 1 111122 12245788999999988776553
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=94.19 E-value=0.09 Score=64.40 Aligned_cols=216 Identities=8% Similarity=-0.091 Sum_probs=105.7
Q ss_pred CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCC---CeEEEEEcc
Q psy307 358 CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE---HRCVRTYYG 434 (1019)
Q Consensus 358 g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~---~~~~~~l~~ 434 (1019)
+.|++.++.. ......+. ....+..|+|.+.+ +.++++-...+.|+.+++... ......+..
T Consensus 386 ~~I~~id~~~-~~~~~~~~-~~~~p~gla~d~~~-------------~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~ 450 (699)
T 1n7d_A 386 HEVRKMTLDR-SEYTSLIP-NLRNVVALDTEVAS-------------NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 450 (699)
T ss_dssp TC-CEECTTS-CCEECCSC-CCTTCCCCEEETTT-------------TEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS
T ss_pred cceEEEeCCC-Ccceeeec-cCcceEEEcccccc-------------CeEEEEecCCCeEEEEecCCCCCCcceEEEEeC
Confidence 5666666632 22222222 22334455565543 344555556678888887431 111111111
Q ss_pred ccccEeEEEEecCCCE-EEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccE
Q psy307 435 HRQAVRDICFNNTGTN-FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPA 513 (1019)
Q Consensus 435 H~~~V~sl~fspdg~~-l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~ 513 (1019)
.......|++.+.+.. +++-...+.|.+.++........+.. .......
T Consensus 451 ~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~------------------------------~~~~P~g 500 (699)
T 1n7d_A 451 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE------------------------------QGSKPRA 500 (699)
T ss_dssp CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCC------------------------------SSCCCCC
T ss_pred CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeC------------------------------CCCCcce
Confidence 1123455677754443 44444567788887764432221111 1122345
Q ss_pred EEEcCCCCEEEEEe-c-CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCcee
Q psy307 514 VTSSPNNKWLACQS-M-DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISG-DADGKCYIWDWKTTKLF 590 (1019)
Q Consensus 514 v~~spdg~~Lasgs-~-Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasg-s~DG~I~IWDl~t~~~l 590 (1019)
++++|.+.+|+... . .+.|.++++..... ..+... .-.....|+|+|++..|+.+ +..+.|.++|+......
T Consensus 501 iavDp~~g~ly~td~~~~~~I~~~~~dG~~~----~~l~~~-~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~ 575 (699)
T 1n7d_A 501 IVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----YSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK 575 (699)
T ss_dssp EECCSSSSCCEECCCSSSCCEEBCCSSSCCC----CEESCS-SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE
T ss_pred EEEccCCCcEEEcccCCCCeEEEEeCCCCCe----eEEEeC-CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE
Confidence 67777554444433 2 26788777754321 112111 11346679999976655544 45678999998653322
Q ss_pred eeeec--cCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 591 KKWKA--HDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 591 ~~l~~--h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
..+.. .-....++++..+ .++++....+.|.++
T Consensus 576 ~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~ 610 (699)
T 1n7d_A 576 TILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSA 610 (699)
T ss_dssp EECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEE
T ss_pred EEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEE
Confidence 22221 1122345555432 466666556677655
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.93 E-value=2.5 Score=46.50 Aligned_cols=117 Identities=9% Similarity=0.054 Sum_probs=69.2
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEeccc-CccEeEEEEcCCCCceeEEEeecCCCCcEEEEE-eCCCcEEEEEccCC
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYGH-RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSC-SMDCRVKLWEVYKE 425 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh-~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sg-s~Dg~I~IWDl~~~ 425 (1019)
+.+++.++.||.|.-.|. .+++....+... ..++... .... .+.++..++.. +.||.|..++...
T Consensus 10 ~~~V~v~t~dG~l~Ald~-~tG~~~W~~~~~~~~p~~~~---~~~~--------~~~~~~~~vv~p~~dG~l~a~~~~~- 76 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDR-RNGHIIWSIEPENFQPLIEI---QEPS--------RLETYETLIIEPFGDGNIYYFNAHQ- 76 (339)
T ss_dssp EEEEEEEETTSCEEEEET-TTTEEEEEECGGGSCCSEEC---CCSC--------TTTSSEEEEECCSTTTEEEEEETTT-
T ss_pred CCEEEEEeCCCeEEEEEC-CCCcEEEEecCCccCCcEEe---cCCc--------cccCCcEEEEEECCCCEEEEEECCC-
Confidence 347899999999999998 556667766543 1122111 1000 01122333333 6899999999844
Q ss_pred CeEEEEEcc----ccccEeE---EEE-----ecCCCEEEEEEcCCeEEEEECCCCceEEEEecC
Q psy307 426 HRCVRTYYG----HRQAVRD---ICF-----NNTGTNFISAGYDRYLKLWDTESGECISRFTSR 477 (1019)
Q Consensus 426 ~~~~~~l~~----H~~~V~s---l~f-----spdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~ 477 (1019)
+.....+.. ...++.. ... ...+..+++|+.+|++.-.|+.+|+.+..+...
T Consensus 77 G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 77 GLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp EEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred CcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 332222221 1112211 000 014557899999999999999999999988764
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=93.02 E-value=5.1 Score=45.11 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=85.4
Q ss_pred CcEEEEEccCCCeEEEEEccc----cccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEE-ecCCceEEEEEecCC
Q psy307 415 CRVKLWEVYKEHRCVRTYYGH----RQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRF-TSRKVAYCVKFHPDE 489 (1019)
Q Consensus 415 g~I~IWDl~~~~~~~~~l~~H----~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~-~~~~~v~~v~~~p~~ 489 (1019)
+.||.-++.... ..+.+... -..|..+..+|+|++|+..+ +..|.|-.+..+.....- .....+.+-.|.-+.
T Consensus 41 n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~ 118 (452)
T 3pbp_A 41 NIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE 118 (452)
T ss_dssp TEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred CEEEEEECCCCC-cceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCC
Confidence 566666664222 23333322 23578899999999887764 568888888743211000 000111111111000
Q ss_pred CeeeeccCCCceeeeCCCCCcccEEEEcCC---CCEEEEEecCCeEEEEEccCcccccc-e----eEEeccccccceEEE
Q psy307 490 DKQHLDIPVDMKYIADPTMHSMPAVTSSPN---NKWLACQSMDNKILIFSALNRFKLNR-K----KTFEGHMVAGYACSL 561 (1019)
Q Consensus 490 ~~~~~~~~~~~~~i~~~~~~~i~~v~~spd---g~~Lasgs~Dg~I~iwd~~~~~~~~~-~----~~l~gh~~~~~V~~v 561 (1019)
........|..+.|||- |..|++-..|+.|++||+........ + ..+........|.++
T Consensus 119 -------------~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 119 -------------EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp -------------CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEE
T ss_pred -------------cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEE
Confidence 00112456778888885 56899999999999999986322111 0 111111111458899
Q ss_pred EEcCCCCEEEEEe--CCCeEEEE
Q psy307 562 DFSPDMSYLISGD--ADGKCYIW 582 (1019)
Q Consensus 562 ~fspdg~~Lasgs--~DG~I~IW 582 (1019)
+|.++|-.|...+ ..|.|+-.
T Consensus 186 ~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EECTTSSCEEEEECTTSCEEEEE
T ss_pred EEcCCCcEEEEEecCCCCCEEEE
Confidence 9999887666644 77877654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=92.99 E-value=15 Score=41.56 Aligned_cols=233 Identities=9% Similarity=0.094 Sum_probs=135.6
Q ss_pred EcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEc
Q psy307 343 WFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422 (1019)
Q Consensus 343 fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl 422 (1019)
.+|. ..++|.-. ..++.|+|++.. ..+..+.-. ..|..=.|-.+. .|+-. .+..|+-|++
T Consensus 73 MnP~-~~iiALra-g~~lQiFnle~K-~klks~~~~-e~VvfWkWis~~---------------~l~lV-T~taVyHWsi 132 (494)
T 1bpo_A 73 MNPA-SKVIALKA-GKTLQIFNIEMK-SKMKAHTMT-DDVTFWKWISLN---------------TVALV-TDNAVYHWSM 132 (494)
T ss_dssp ECSS-SSCEEEEE-TTEEEEEETTTT-EEEEEEECS-SCCCEEEEEETT---------------EEEEE-CSSEEEEEES
T ss_pred eCCC-CcEEEEec-CCeEEEEchHHh-hhhcceecC-CCceEEEecCCC---------------eEEEE-cCCeeEEecc
Confidence 3663 45555444 689999999544 444443322 345555554433 22222 3567999999
Q ss_pred cCCCeEEEEEcccc----ccEeEEEEecCCCEEEEEEc-------CCeEEEEECCCCceEEEEecCCceEEEEEecCCCe
Q psy307 423 YKEHRCVRTYYGHR----QAVRDICFNNTGTNFISAGY-------DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDK 491 (1019)
Q Consensus 423 ~~~~~~~~~l~~H~----~~V~sl~fspdg~~l~S~s~-------Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~ 491 (1019)
.....+...+..|. ..|..-..+++.++++..|- .|.+.+|..+.+.. +.++++.... ..+..++
T Consensus 133 ~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGhaa~F-~~~~~~g-- 208 (494)
T 1bpo_A 133 EGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASF-AQFKMEG-- 208 (494)
T ss_dssp SSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECCSEEEE-EEEECTT--
T ss_pred cCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chheeeeeee-EEEecCC--
Confidence 76667778877764 44666677888888664442 46788888876543 3333332111 1111111
Q ss_pred eeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec---CCeEEEEEccCc---ccccceeEE----eccccccceEEE
Q psy307 492 QHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM---DNKILIFSALNR---FKLNRKKTF----EGHMVAGYACSL 561 (1019)
Q Consensus 492 ~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~---Dg~I~iwd~~~~---~~~~~~~~l----~gh~~~~~V~~v 561 (1019)
...+. ..++.+.. .+.++|.++... ...-..+.. ..........++
T Consensus 209 ---------------~~~~~---------~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvam 264 (494)
T 1bpo_A 209 ---------------NAEES---------TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM 264 (494)
T ss_dssp ---------------CSSEE---------EEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEE
T ss_pred ---------------CCCCc---------eEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEE
Confidence 00111 12222222 368888888532 111111111 111123556788
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEE
Q psy307 562 DFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAK 624 (1019)
Q Consensus 562 ~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~i 624 (1019)
..|+.-..+..-+.-|.|++||+.|+.++..-+-....|...+-+... .-++.....|.|..
T Consensus 265 qvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~-~Gi~~Vnr~GqVl~ 326 (494)
T 1bpo_A 265 QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEAT-AGIIGVNRKGQVLS 326 (494)
T ss_dssp EEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTT-TEEEEEETTCEEEE
T ss_pred EecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCC-CcEEEEccCceEEE
Confidence 999988899999999999999999999988777666667666555443 24666667777643
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=92.91 E-value=5.1 Score=45.95 Aligned_cols=33 Identities=9% Similarity=0.135 Sum_probs=22.9
Q ss_pred ccEeEEEEecCCCEEEEEEcCCeEEEEECCCCc
Q psy307 437 QAVRDICFNNTGTNFISAGYDRYLKLWDTESGE 469 (1019)
Q Consensus 437 ~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~ 469 (1019)
...++|+|.|+|+.+++-...+.|++++..++.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~ 59 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGS 59 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCc
Confidence 345688999999866654333478888765554
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=92.61 E-value=13 Score=45.51 Aligned_cols=228 Identities=10% Similarity=0.055 Sum_probs=118.1
Q ss_pred CCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec----ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEE
Q psy307 335 TKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY----GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLS 410 (1019)
Q Consensus 335 ~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~----gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~s 410 (1019)
...|++|.-..+ | .|-.|+.+| +..+|-.. ...+. .....|.++....+| .|..
T Consensus 21 ~n~V~~I~qD~~-G-~lWigT~~G-L~ryDG~~----~~~~~~~~~~~~~~i~~i~~d~~g---------------~lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSE-G-LIWIGSNKG-LFSYDGYS----TQQHFTYGENNNTRIYCGVIIDNT---------------YLYM 78 (758)
T ss_dssp CCCEEEEEECTT-S-CEEEEESSC-EEEECSSC----EEECSCTTSTTSSCEEEEEEETTT---------------EEEE
T ss_pred cceEEEEEECCC-C-CEEEEECCC-ccccCCCc----eEEEEccCCCCCceEEEEEEcCCC---------------cEEE
Confidence 457899987764 3 455566777 44566321 11121 112346666555544 5666
Q ss_pred EeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCC
Q psy307 411 CSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDED 490 (1019)
Q Consensus 411 gs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~ 490 (1019)
|+.+| +..||.... ............|.++.. .+| .|..++.+ -|..+|..+++... +... +
T Consensus 79 gT~~G-l~~yd~~~~-~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~-~~~~---------~--- 140 (758)
T 3ott_A 79 GTDNG-ILVYNYRAD-RYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTS-FDTR---------R--- 140 (758)
T ss_dssp EETTE-EEEEETTTT-EECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEE-ECHH---------H---
T ss_pred EeCCC-eEEEeCCCC-EEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEE-eccC---------C---
Confidence 66655 778887432 221111112235766654 344 45556665 57888877655322 2100 0
Q ss_pred eeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEecc----ccccceEEEEEcCC
Q psy307 491 KQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGH----MVAGYACSLDFSPD 566 (1019)
Q Consensus 491 ~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh----~~~~~V~~v~fspd 566 (1019)
.......|.++....+|.+.+ |+. +-|..|+..+.. ...+... .....|.++...++
T Consensus 141 -------------~~l~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~----~~~~~~~~~~~~~~~~i~~i~~d~~ 201 (758)
T 3ott_A 141 -------------NGLPNNTIYSIIRTKDNQIYV-GTY-NGLCRYIPSNGK----FEGIPLPVHSSQSNLFVNSLLEDTT 201 (758)
T ss_dssp -------------HCCSCSCEEEEEECTTCCEEE-EET-TEEEEEETTTTE----EEEECCCCCTTCSSCCEEEEEEETT
T ss_pred -------------CCcCCCeEEEEEEcCCCCEEE-EeC-CCHhhCccCCCc----eEEecCCCccccccceeEEEEEECC
Confidence 001123455666666776554 454 457778765431 1111110 01234788888877
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 567 MSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 567 g~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+..|..|+. +-|..+|..+++...........|.++....++. |..|..+| +.++
T Consensus 202 ~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lWigT~~G-l~~~ 256 (758)
T 3ott_A 202 RQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGD--LLAGTDNG-LYVY 256 (758)
T ss_dssp TTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCC--EEEEETTE-EEEE
T ss_pred CCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCC--EEEEeCCc-eeEE
Confidence 765555554 4588899877654322111233577887777663 44444444 4443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.32 E-value=10 Score=40.09 Aligned_cols=65 Identities=9% Similarity=0.070 Sum_probs=36.4
Q ss_pred CCCEEEEEecC-----CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCc
Q psy307 519 NNKWLACQSMD-----NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD-----GKCYIWDWKTTK 588 (1019)
Q Consensus 519 dg~~Lasgs~D-----g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D-----G~I~IWDl~t~~ 588 (1019)
+++.++.|+.+ +.+.+||+.+.. ...+..+.... .....+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r--~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGH-WTNVTPMATKR--SGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTE-EEEECCCSSCC--BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCc-EEeCCCCCccc--ccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 66777777654 468889987541 11111111111 11122223 67777777764 468999998764
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=3.9 Score=41.88 Aligned_cols=155 Identities=10% Similarity=-0.053 Sum_probs=80.4
Q ss_pred ccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEE
Q psy307 437 QAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTS 516 (1019)
Q Consensus 437 ~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~ 516 (1019)
..+.+++|+|+|...+. .+|.+.-.+..+.....-+.. ...+-...-..-.++.+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-----------------------~t~IG~~Gw~~F~a~~f 95 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-----------------------AKKIGNGGWNQFQFLFF 95 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-----------------------CEEEECSCGGGCSEEEE
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-----------------------ccEecccccccceEEEE
Confidence 36779999999886555 677766555433221100000 00111111112467888
Q ss_pred cCCCCEEEEEecCCeEEEEEccCccccc--ceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-----
Q psy307 517 SPNNKWLACQSMDNKILIFSALNRFKLN--RKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKL----- 589 (1019)
Q Consensus 517 spdg~~Lasgs~Dg~I~iwd~~~~~~~~--~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~----- 589 (1019)
.|+|.+.++ .||.|+-++.-+..... -..+.-+...-..+..+.|.|+|.+.+.. ||.++-+...++..
T Consensus 96 D~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~ 171 (236)
T 1tl2_A 96 DPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLA 171 (236)
T ss_dssp CTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHH
T ss_pred CCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCccccc
Confidence 999988877 56999877753211100 01111111112347899999999877766 77754443332210
Q ss_pred -eeeee-ccCCCEEEEEEcCCCCcEEEEEeCCCcEE
Q psy307 590 -FKKWK-AHDGVCISTLWHPHEPSKVVTAGWDAATA 623 (1019)
Q Consensus 590 -l~~l~-~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~ 623 (1019)
...+. ..-..-.-+.|.+++. |..+. +|.+.
T Consensus 172 ~~~~~g~~g~~~yr~l~f~~~G~--l~~v~-~g~~Y 204 (236)
T 1tl2_A 172 RATKIGQGGWDTFKFLFFSSVGT--LFGVQ-GGKFY 204 (236)
T ss_dssp HCEEEESSSGGGEEEEEECTTSC--EEEEE-TTEEE
T ss_pred ccceeccCCcceEEEEEECCCCc--EEEEe-CCeEE
Confidence 11111 1122344566888763 33333 77553
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.75 E-value=15 Score=38.88 Aligned_cols=94 Identities=10% Similarity=0.030 Sum_probs=46.6
Q ss_pred CCCEEEEEec---------CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC-----CeEEEEeC
Q psy307 519 NNKWLACQSM---------DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD-----GKCYIWDW 584 (1019)
Q Consensus 519 dg~~Lasgs~---------Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D-----G~I~IWDl 584 (1019)
++++++.|+. -+.+.+||..+.. ...+..+.... .....+.+ ++++++.|+.+ ..+.+||+
T Consensus 149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r--~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~ 223 (306)
T 3ii7_A 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATET-WTELCPMIEAR--KNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDI 223 (306)
T ss_dssp TTEEEEECCEESCTTTCEECCCEEEEETTTTE-EEEECCCSSCC--BSCEEEEE--TTEEEEECCEETTEEBCCEEEEET
T ss_pred CCEEEEECCCCCCCCcccccceEEEeCCCCCe-EEECCCccchh--hcceEEEE--CCEEEEEeCCCCCCCCceEEEeeC
Confidence 5666666653 3458889887641 11111111111 11122222 67777777654 35889998
Q ss_pred CCCc--eeeeeeccCCCEEEEEEcCCCCcEEEEEeCCC
Q psy307 585 KTTK--LFKKWKAHDGVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 585 ~t~~--~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
.+.+ .+..+.........+.+ ++.+++.||.++
T Consensus 224 ~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~ 258 (306)
T 3ii7_A 224 KLNEWKMVSPMPWKGVTVKCAAV---GSIVYVLAGFQG 258 (306)
T ss_dssp TTTEEEECCCCSCCBSCCEEEEE---TTEEEEEECBCS
T ss_pred CCCcEEECCCCCCCccceeEEEE---CCEEEEEeCcCC
Confidence 8753 22222221122223333 336777777654
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=91.64 E-value=9 Score=42.12 Aligned_cols=40 Identities=13% Similarity=0.054 Sum_probs=28.4
Q ss_pred EEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCce
Q psy307 431 TYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGEC 470 (1019)
Q Consensus 431 ~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~ 470 (1019)
.+...-...+.|+|.|+|+.+++--..|.|++++..+++.
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~ 65 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK 65 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE
Confidence 3333445667889999998766654489999998766553
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.58 E-value=16 Score=38.69 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=35.4
Q ss_pred CCCEEEEEecC-------CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC-----eEEEEeCCC
Q psy307 519 NNKWLACQSMD-------NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG-----KCYIWDWKT 586 (1019)
Q Consensus 519 dg~~Lasgs~D-------g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG-----~I~IWDl~t 586 (1019)
+++.++.|+.+ +.+.+||+.+.. ...+..+.... .....+.+ ++++++.|+.++ .+.+||..+
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r--~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 229 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNE-WTYIAEMSTRR--SGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTT 229 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTE-EEEECCCSSCC--BSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTT
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCc-EEECCCCcccc--ccccEEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence 56666766542 458889887541 11111111111 11122222 677778877643 689999877
Q ss_pred Cc
Q psy307 587 TK 588 (1019)
Q Consensus 587 ~~ 588 (1019)
.+
T Consensus 230 ~~ 231 (302)
T 2xn4_A 230 NA 231 (302)
T ss_dssp TE
T ss_pred CC
Confidence 54
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.92 E-value=15 Score=38.79 Aligned_cols=65 Identities=8% Similarity=0.027 Sum_probs=35.9
Q ss_pred CCCEEEEEecC-----CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCc
Q psy307 519 NNKWLACQSMD-----NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD-----GKCYIWDWKTTK 588 (1019)
Q Consensus 519 dg~~Lasgs~D-----g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D-----G~I~IWDl~t~~ 588 (1019)
+++.++.|+.+ +.+.+||+.+.. ...+..+.... .....+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r--~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDS-WTTVTSMTTPR--CYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTE-EEEECCCSSCC--BSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCc-EEECCCCCCcc--cceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 56777777664 468899987642 11111111111 11222233 67777777765 357888887653
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.84 E-value=19 Score=38.35 Aligned_cols=66 Identities=6% Similarity=0.036 Sum_probs=36.4
Q ss_pred CCCCEEEEEec-C-----CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC-----eEEEEeCCC
Q psy307 518 PNNKWLACQSM-D-----NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG-----KCYIWDWKT 586 (1019)
Q Consensus 518 pdg~~Lasgs~-D-----g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG-----~I~IWDl~t 586 (1019)
-+++.++.|+. + +.+.+||..+.. ...+..+.... .....+.+ ++++++.|+.++ .+.+||+.+
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r--~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 221 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE-WKELAPMQTAR--SLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITD 221 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTE-EEECCCCSSCC--BSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCe-EEECCCCCCch--hceEEEEE--CCEEEEEeccCCCCccceEEEEECCC
Confidence 35667777765 2 468889887541 11111111111 11122222 677777777654 588999877
Q ss_pred Cc
Q psy307 587 TK 588 (1019)
Q Consensus 587 ~~ 588 (1019)
.+
T Consensus 222 ~~ 223 (315)
T 4asc_A 222 NK 223 (315)
T ss_dssp TE
T ss_pred Ce
Confidence 63
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=89.72 E-value=9 Score=39.18 Aligned_cols=113 Identities=12% Similarity=-0.002 Sum_probs=59.2
Q ss_pred EeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC
Q psy307 439 VRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP 518 (1019)
Q Consensus 439 V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp 518 (1019)
-.++.|.|+|.+.++ .||.|.-++-.+.....-+ .....+-...-..+..+.+.|
T Consensus 90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl-----------------------~~a~~vg~~gw~~~~~lff~p 144 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWI-----------------------ARATEVGSGGWSGFKFLFFHP 144 (236)
T ss_dssp CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHH-----------------------HHSEEEECSSGGGEEEEEECT
T ss_pred ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCcee-----------------------ccccEeccCCCCceEEEEECC
Confidence 478899999987766 6698887764321110000 001112222224567888999
Q ss_pred CCCEEEEEecCCeEEEEEccCcc--cccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEE
Q psy307 519 NNKWLACQSMDNKILIFSALNRF--KLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCY 580 (1019)
Q Consensus 519 dg~~Lasgs~Dg~I~iwd~~~~~--~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~ 580 (1019)
+|.+.++. |+.++-...-... ......+..++..-....-+.|+++|.+.++. +|.++
T Consensus 145 ~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 145 NGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp TSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 99887777 7775433221110 00001222222212234456788888866655 66443
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=89.36 E-value=13 Score=41.97 Aligned_cols=148 Identities=12% Similarity=0.120 Sum_probs=96.2
Q ss_pred CcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeee
Q psy307 415 CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL 494 (1019)
Q Consensus 415 g~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~ 494 (1019)
..|.|-|+.......+.-..-. +.-.+|..+.++--. ..++.|+|+++...+..+.....+.--.|-.+
T Consensus 48 ~~vvIiDl~~~~~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~------ 116 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL------ 116 (494)
T ss_dssp CEEEEEETTSTTSCEEEECCCS----EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEET------
T ss_pred CeEEEEECCCCCcceecccccc----eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCC------
Confidence 3677888866555544333222 225677777666554 78999999999999998887666655555321
Q ss_pred ccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccc--cccceEEEEEcCCCCEEEE
Q psy307 495 DIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHM--VAGYACSLDFSPDMSYLIS 572 (1019)
Q Consensus 495 ~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~--~~~~V~~v~fspdg~~Las 572 (1019)
+.|+.-+ +..|+.|++.+.. .+.+.+..|. ....|..-..+++.+|++.
T Consensus 117 --------------------------~~l~lVT-~taVyHWsi~~~s--~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l 167 (494)
T 1bpo_A 117 --------------------------NTVALVT-DNAVYHWSMEGES--QPVKMFDRHSSLAGCQIINYRTDAKQKWLLL 167 (494)
T ss_dssp --------------------------TEEEEEC-SSEEEEEESSSSC--CCEEEEECCGGGTTCEEEEEEECTTSSEEEE
T ss_pred --------------------------CeEEEEc-CCeeEEecccCCC--CchhheecchhcccceEEEEEECCCCCeEEE
Confidence 2344433 6789999987532 3455555543 3356777888999998775
Q ss_pred Ee-------CCCeEEEEeCCCCceeeeeeccCCCEEEE
Q psy307 573 GD-------ADGKCYIWDWKTTKLFKKWKAHDGVCIST 603 (1019)
Q Consensus 573 gs-------~DG~I~IWDl~t~~~l~~l~~h~~~V~sl 603 (1019)
.+ -.|.+.+|..+. +.-+.+.+|.+.-..+
T Consensus 168 ~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~ 204 (494)
T 1bpo_A 168 TGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQF 204 (494)
T ss_dssp EEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEE
T ss_pred EeecccCCcccceEEEeeccc-cccchheeeeeeeEEE
Confidence 43 247889999765 3455677776544333
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.30 E-value=16 Score=38.66 Aligned_cols=65 Identities=8% Similarity=-0.002 Sum_probs=35.9
Q ss_pred CCCEEEEEecC-----CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCc
Q psy307 519 NNKWLACQSMD-----NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD-----GKCYIWDWKTTK 588 (1019)
Q Consensus 519 dg~~Lasgs~D-----g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D-----G~I~IWDl~t~~ 588 (1019)
++++++.|+.+ ..+.+||+.+.. ...+..+.... .....+.+ ++++++.|+.+ ..+.+||..+.+
T Consensus 200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r--~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 200 KDKIFAVGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWKG--VTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp TTEEEEECCEETTEEBCCEEEEETTTTE-EEECCCCSCCB--SCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCCCceEEEeeCCCCc-EEECCCCCCCc--cceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 56677777653 468889987641 11111111111 11222333 67788888754 468888887653
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.93 E-value=20 Score=37.82 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=35.8
Q ss_pred CCCEEEEEecC-----CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCc
Q psy307 519 NNKWLACQSMD-----NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG-----KCYIWDWKTTK 588 (1019)
Q Consensus 519 dg~~Lasgs~D-----g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG-----~I~IWDl~t~~ 588 (1019)
++++++.|+.+ +.+.+||..+.. ...+..+.... .....+.+ ++++++.|+.++ .+.+||..+.+
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~r--~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNA-WRQVADMNMCR--RNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTE-EEEECCCSSCC--BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCC-EeeCCCCCCcc--ccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 56777777654 468899987541 11111111111 11112222 677777777654 48888887653
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=88.50 E-value=18 Score=38.45 Aligned_cols=65 Identities=14% Similarity=0.032 Sum_probs=36.5
Q ss_pred CCCEEEEEecC-----CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCc
Q psy307 519 NNKWLACQSMD-----NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD-----GKCYIWDWKTTK 588 (1019)
Q Consensus 519 dg~~Lasgs~D-----g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D-----G~I~IWDl~t~~ 588 (1019)
++++++.|+.+ +.+.+||+.+.. ...+..+.... .....+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r--~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNE-WRMITAMNTIR--SGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTE-EEECCCCSSCC--BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCe-EeeCCCCCCcc--ccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 56777777654 468889886541 11111111111 11222333 67777777764 468999988754
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=87.87 E-value=32 Score=36.83 Aligned_cols=127 Identities=10% Similarity=0.040 Sum_probs=67.2
Q ss_pred CCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc-CCeEEEEECCCCceEEEEecCCceEEEEEecCCCe
Q psy307 413 MDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY-DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDK 491 (1019)
Q Consensus 413 ~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~-Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~ 491 (1019)
.++.-.||-+...+.....+..+.. ..|+++++.|+-.+. ...|.+-++..+.....+.. . .
T Consensus 125 ~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~-~-~----------- 187 (302)
T 3s25_A 125 TQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC-N-C----------- 187 (302)
T ss_dssp SSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS-C-E-----------
T ss_pred CCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC-C-c-----------
Confidence 3444455554434433444444433 356778888776655 56787778766543322211 0 0
Q ss_pred eeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC--CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCE
Q psy307 492 QHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD--NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSY 569 (1019)
Q Consensus 492 ~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D--g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~ 569 (1019)
...++|++.+|+-...+ ..|..-++..... ..+.. ..+ ..|+|+|.+
T Consensus 188 ---------------------~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~----~~Lt~----~~~--~~~~~~g~~ 236 (302)
T 3s25_A 188 ---------------------YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNP----VVLTE----ANI--EHYNVYGSL 236 (302)
T ss_dssp ---------------------EEEEEEETTEEEEEEGGGTTEEEEECSSSCCC----EECSC----SCE--EEEEEETTE
T ss_pred ---------------------cceeeecCCEEEEEEcCCCcEEEEEECCCCCe----EEEeC----CCc--ceEEECCCE
Confidence 11234777777765543 3566666655421 22222 122 347888888
Q ss_pred EEEEeC--CCeEEEEeCCCC
Q psy307 570 LISGDA--DGKCYIWDWKTT 587 (1019)
Q Consensus 570 Lasgs~--DG~I~IWDl~t~ 587 (1019)
|.-++. .+.|..-++...
T Consensus 237 Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 237 IFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp EEEEECSSSCEEEEEETTSC
T ss_pred EEEEECCCCcEEEEEECCCC
Confidence 876532 356666666543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=85.96 E-value=39 Score=35.89 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=34.9
Q ss_pred CCCCEEEEEec------CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC-----CeEEEEeCCC
Q psy307 518 PNNKWLACQSM------DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD-----GKCYIWDWKT 586 (1019)
Q Consensus 518 pdg~~Lasgs~------Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D-----G~I~IWDl~t 586 (1019)
.+++.++.|+. -+.+.+||..+.. ...+..+.... .....+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r--~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 231 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD-WKDLAPMKTPR--SMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKT 231 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTE-EEEECCCSSCC--BSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCE-EEECCCCCCCc--ccceEEEE--CCEEEEEcCcCCCCccceEEEEECCC
Confidence 36667777654 2468899987641 11111111111 11122222 66777777643 3577899877
Q ss_pred Cc
Q psy307 587 TK 588 (1019)
Q Consensus 587 ~~ 588 (1019)
.+
T Consensus 232 ~~ 233 (318)
T 2woz_A 232 NK 233 (318)
T ss_dssp CC
T ss_pred Ce
Confidence 54
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=85.77 E-value=35 Score=36.45 Aligned_cols=81 Identities=2% Similarity=0.010 Sum_probs=45.0
Q ss_pred EcCCCCEEEEEec-CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCceeee
Q psy307 516 SSPNNKWLACQSM-DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD--GKCYIWDWKTTKLFKK 592 (1019)
Q Consensus 516 ~spdg~~Lasgs~-Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D--G~I~IWDl~t~~~l~~ 592 (1019)
++|+++.|.-.+. ..+|.+.++.++.. ...+.+. .. ..++|++.+|+-...+ ..|..-++..+. ...
T Consensus 152 ~~~~g~~iy~t~~g~~~Iy~~~l~g~~~---~~l~~~~-----~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~ 221 (302)
T 3s25_A 152 CNTSDRYFYYNNPKNGQLYRYDTASQSE---ALFYDCN-----CY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVV 221 (302)
T ss_dssp SEEETTEEEEECTTTCCEEEEETTTTEE---EEEECSC-----EE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEE
T ss_pred eeEECCEEEEEeCCCceEEEEECCCCCE---EEEeCCC-----cc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEE
Confidence 4567777776654 56888888766532 1222221 11 2356999988876544 356666766544 333
Q ss_pred eeccCCCEEEEEEcCCCC
Q psy307 593 WKAHDGVCISTLWHPHEP 610 (1019)
Q Consensus 593 l~~h~~~V~sl~~sp~~~ 610 (1019)
+.. ..+. .|+|.+.
T Consensus 222 Lt~--~~~~--~~~~~g~ 235 (302)
T 3s25_A 222 LTE--ANIE--HYNVYGS 235 (302)
T ss_dssp CSC--SCEE--EEEEETT
T ss_pred EeC--CCcc--eEEECCC
Confidence 322 2232 3666664
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=85.52 E-value=22 Score=46.17 Aligned_cols=235 Identities=9% Similarity=0.094 Sum_probs=121.9
Q ss_pred cCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEcc
Q psy307 344 FPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVY 423 (1019)
Q Consensus 344 spd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~ 423 (1019)
+|. ..++|.-+ ..++.|+|+.... .+..+.- ...|..=.|-.+. .|+-. .+..|.-|++.
T Consensus 74 nP~-~~iiALra-g~~lQiFnl~~k~-klks~~~-~e~VvfWkWis~~---------------~l~lV-T~~aVyHW~~~ 133 (1630)
T 1xi4_A 74 NPA-SKVIALKA-GKTLQIFNIEMKS-KMKAHTM-TDDVTFWKWISLN---------------TVALV-TDNAVYHWSME 133 (1630)
T ss_pred CCC-cceEEEec-CCeEEEeehHHhh-hhccccc-CCCceEEEecCCC---------------eeEEE-cCCeEEEeccC
Confidence 553 44444443 6789999994432 2332222 2345545554433 22222 34679999996
Q ss_pred CCCeEEEEEccc----cccEeEEEEecCCCEEEEEE-------cCCeEEEEECCCCceEEEEecCCceEEEEEecCCCee
Q psy307 424 KEHRCVRTYYGH----RQAVRDICFNNTGTNFISAG-------YDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQ 492 (1019)
Q Consensus 424 ~~~~~~~~l~~H----~~~V~sl~fspdg~~l~S~s-------~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~ 492 (1019)
....+...+..| ...|..-..+++.++++..| -.|.+.+|.++.+.. +.+.++.... ..+..+
T Consensus 134 ~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F-~~~~~~---- 207 (1630)
T 1xi4_A 134 GESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASF-AQFKME---- 207 (1630)
T ss_pred CCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhh-heeccC----
Confidence 555666666655 34566667788888866444 246777887765432 1122111000 000000
Q ss_pred eeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCc---c-cc--cceeE-EeccccccceEEEEEcC
Q psy307 493 HLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNR---F-KL--NRKKT-FEGHMVAGYACSLDFSP 565 (1019)
Q Consensus 493 ~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~---~-~~--~~~~~-l~gh~~~~~V~~v~fsp 565 (1019)
....+..-++|.... ...+.++|.++... . .. ..... +..........++..|+
T Consensus 208 -------------~~~~~~~l~~f~~~~------~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~ 268 (1630)
T 1xi4_A 208 -------------GNAEESTLFCFAVRG------QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE 268 (1630)
T ss_pred -------------CCCCCceEEEEEEec------CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc
Confidence 000111111221111 11267888877432 0 10 00000 11111124456788888
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEE
Q psy307 566 DMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAK 624 (1019)
Q Consensus 566 dg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~i 624 (1019)
.-..+..-+.-|.|+++|+.|+.++..-+-...+|...+-+...+ -++.....|.|..
T Consensus 269 k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~-g~~~vnr~G~vl~ 326 (1630)
T 1xi4_A 269 KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATA-GIIGVNRKGQVLS 326 (1630)
T ss_pred ccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCC-ceEEEcCCceEEE
Confidence 888888889999999999999998776555555555554443321 2555556666643
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=82.55 E-value=42 Score=36.23 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=19.1
Q ss_pred eEEEEeCCCCc--eeeeeeccCCCEEEEEEcCCCCcEEEEEeCCC
Q psy307 578 KCYIWDWKTTK--LFKKWKAHDGVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 578 ~I~IWDl~t~~--~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
.+.+||+.+.+ .+..+........++.+ ++ .+++.||.++
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~ 327 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLPW--NN-SLLIIGGETA 327 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEEE--TT-EEEEEEEECG
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEEe--CC-EEEEEeeeCC
Confidence 57889987653 33333322222222322 23 6778888654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1019 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-35 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-19 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-18 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-18 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 6e-27 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-18 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-14 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-20 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-19 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-16 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-20 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-10 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.001 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-19 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-18 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.004 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-18 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-17 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-16 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.002 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-15 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-08 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-15 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 8e-14 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 9e-13 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-13 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-09 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 7e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-13 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 8e-13 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-12 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 5e-10 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 5e-08 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-08 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 9e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 1e-07 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 2e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 8e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 5e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.003 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.004 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 1e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 9e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-04 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.001 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 133 bits (334), Expect = 8e-35
Identities = 69/325 (21%), Positives = 122/325 (37%), Gaps = 49/325 (15%)
Query: 324 PKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVR 383
+ + GH ++ + + P +++S S D +K+W+ + RT GH +V+
Sbjct: 6 RPPEKYALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDY-ETGDFERTLKGHTDSVQ 63
Query: 384 DICFNNT----------------------------GTNFISAIRWFPKSAHLLLSCSMDC 415
DI F+++ G + + + ++S S D
Sbjct: 64 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123
Query: 416 RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFT 475
+K+WEV + CV+T+ GHR+ VR + N GT S D+ +++W + EC +
Sbjct: 124 TIKMWEV-QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182
Query: 476 S-RKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILI 534
R V C+ + P+ + S +L S D I +
Sbjct: 183 EHRHVVECISWAPESSYSSIS-----------EATGSETKKSGKPGPFLLSGSRDKTIKM 231
Query: 535 FSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK 594
+ L T GH + + F +++S D +WD+K + K
Sbjct: 232 WDVSTGMCL---MTLVGH--DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 286
Query: 595 AHDGVCISTLWHPHEPSKVVTAGWD 619
AH+ S +H P VVT D
Sbjct: 287 AHEHFVTSLDFHKTAP-YVVTGSVD 310
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 86.7 bits (213), Expect = 7e-19
Identities = 39/170 (22%), Positives = 67/170 (39%), Gaps = 16/170 (9%)
Query: 295 DYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSC 354
D R ++ + LR C + S + K LLS
Sbjct: 164 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 223
Query: 355 SMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD 414
S D +K+W+ C+ T GH VR + F++ G +LSC+ D
Sbjct: 224 SRDKTIKMWD-VSTGMCLMTLVGHDNWVRGVLFHSGG--------------KFILSCADD 268
Query: 415 CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWD 464
+++W+ YK RC++T H V + F+ T ++ D+ +K+W+
Sbjct: 269 KTLRVWD-YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 85.6 bits (210), Expect = 1e-18
Identities = 44/297 (14%), Positives = 94/297 (31%), Gaps = 25/297 (8%)
Query: 429 VRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRK---------- 478
GHR V + F+ + +SA D +K+WD E+G+
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69
Query: 479 --VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFS 536
K + H++ +V+ PN + S D I ++
Sbjct: 70 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129
Query: 537 ALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH 596
+ + TF GH + + + D + + S D +W T + + + H
Sbjct: 130 VQTGYCVK---TFTGHR--EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 184
Query: 597 DGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSI 656
V W P ++ + T K ++ +K + +++ + + L ++
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI-KMWDVSTGMCLMTL 243
Query: 657 IQEICSGWSLSDSEQYALQFSETNNK-----NYITEKNRNEIK--NGSVLRLAFSAS 706
+ + S ++K +Y ++ + V L F +
Sbjct: 244 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT 300
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 84.4 bits (207), Expect = 3e-18
Identities = 48/304 (15%), Positives = 94/304 (30%), Gaps = 41/304 (13%)
Query: 285 KTILHIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWF 344
+K TD + + +D + +
Sbjct: 50 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSI 109
Query: 345 PKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISA-----IR 399
+ ++S S D +K+WEV + CV+T+ GHR+ VR + N GT S +R
Sbjct: 110 MPNGDHIVSASRDKTIKMWEV-QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 168
Query: 400 WFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRY 459
+ + + + R + + + G +S D+
Sbjct: 169 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 228
Query: 460 LKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN 519
+K+WD +G C+ + + V
Sbjct: 229 IKMWDVSTGMCLMTLVGHD------------------------------NWVRGVLFHSG 258
Query: 520 NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKC 579
K++ + D + ++ N+ + KT H + SLDF Y+++G D
Sbjct: 259 GKFILSCADDKTLRVWDYKNKRCM---KTLNAH--EHFVTSLDFHKTAPYVVTGSVDQTV 313
Query: 580 YIWD 583
+W+
Sbjct: 314 KVWE 317
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 110 bits (276), Expect = 6e-27
Identities = 69/391 (17%), Positives = 106/391 (27%), Gaps = 91/391 (23%)
Query: 261 AELEEYL--AKKQKKGKQSEEKPLEEKTILHIKDPTDYQGRSFLHPPHDVGTNLRSDTPP 318
+EL++ A++ K + K + T+ I + D GR +
Sbjct: 2 SELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRR------------ 49
Query: 319 DRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGH 378
T GH I A+ W S LL+S S D ++ +W+ Y V
Sbjct: 50 -----------TLRGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYT-TNKVHAIPLR 96
Query: 379 RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRV--------------------- 417
V + +G S + L + + RV
Sbjct: 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 156
Query: 418 ---------KLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESG 468
+ + T+ GH V + F+S D KLWD G
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 469 ECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM 528
C FT + + A+ PN A S
Sbjct: 217 MCRQTFTGHE------------------------------SDINAICFFPNGNAFATGSD 246
Query: 529 DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK 588
D +F + T+ + S+ FS L++G D C +WD
Sbjct: 247 DATCRLF---DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Query: 589 LFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619
HD V T WD
Sbjct: 304 RAGVLAGHDNRVSCLGVTDDG-MAVATGSWD 333
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 85.2 bits (209), Expect = 3e-18
Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 17/140 (12%)
Query: 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQ-AVRD 384
T+ GH I+AI +FP + + S D +L+++ ++ + + + +
Sbjct: 217 MCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275
Query: 385 ICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICF 444
+ F+ +G LLL+ D +W+ + GH V +
Sbjct: 276 VSFSKSG--------------RLLLAGYDDFNCNVWDA-LKADRAGVLAGHDNRVSCLGV 320
Query: 445 NNTGTNFISAGYDRYLKLWD 464
+ G + +D +LK+W+
Sbjct: 321 TDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 71.7 bits (174), Expect = 7e-14
Identities = 41/274 (14%), Positives = 82/274 (29%), Gaps = 35/274 (12%)
Query: 370 RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCV 429
R RT GH + + + LL+S S D ++ +W+ Y V
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDS--------------RLLVSASQDGKLIIWDSYT-TNKV 90
Query: 430 RTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTES------------GECISRFTSR 477
V + +G G D +++ ++ G R
Sbjct: 91 HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150
Query: 478 KVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN---NKWLACQSMDNKILI 534
+ D ++ V S + + D +
Sbjct: 151 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210
Query: 535 FSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK 594
+ ++TF GH ++ F P+ + +G D C ++D + + +
Sbjct: 211 WDVREG---MCRQTFTGHE--SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Query: 595 AHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDA 628
+ +C T + +++ AG+D V DA
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.8 bits (226), Expect = 2e-20
Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 37/302 (12%)
Query: 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDI 385
+GH + F + ++S S D +K+W +C+RT GH V
Sbjct: 7 KSPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSA-VTGKCLRTLVGHTGGVWSS 63
Query: 386 CFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN 445
+ + +V+ + + C +
Sbjct: 64 QMRDNI-------------------IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH 104
Query: 446 NTGTNFISAGYDRYLKLWDTESGECISRFTSRKVA--------YCVKFHPDEDKQHLDIP 497
+S D L++WD E+G+C+ A V + + P
Sbjct: 105 LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP 164
Query: 498 VDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGY 557
+ H+ + + + S+D I ++ + T +
Sbjct: 165 ETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWD-VETGNCIHTLTGHQSLT--- 220
Query: 558 ACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAG 617
++ + L+SG+AD IWD KT + + + + + + V+T+
Sbjct: 221 -SGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSS 277
Query: 618 WD 619
D
Sbjct: 278 DD 279
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.7 bits (218), Expect = 2e-19
Identities = 49/354 (13%), Positives = 98/354 (27%), Gaps = 44/354 (12%)
Query: 363 WEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
W E + + GH V C G ++S S D +K+W
Sbjct: 1 WRR-GELKSPKVLKGHDDHVIT-CLQFCGN--------------RIVSGSDDNTLKVWSA 44
Query: 423 YKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYC 482
+C+RT GH V + S + +T + V
Sbjct: 45 -VTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM 103
Query: 483 VKFHPDEDKQHLDIPVDMKYIADPTMH------SMPAVTSSPNNKWLACQSMDNKILIFS 536
D + + I + + + + D + ++
Sbjct: 104 HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD 163
Query: 537 ALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH 596
L T +GH Y+ D +++SG D +WD +T H
Sbjct: 164 PETETCL---HTLQGHTNRVYSLQ----FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 216
Query: 597 DGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSI 656
+ + ++ +G +T K+ D + ++
Sbjct: 217 QSLTSGMELKDN----ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC------- 265
Query: 657 IQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIK--NGSVLRLAFSASKT 708
+ + ++ S+ ++ + +I E G V R+ S +K
Sbjct: 266 -LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL 318
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.2 bits (196), Expect = 1e-16
Identities = 44/294 (14%), Positives = 87/294 (29%), Gaps = 38/294 (12%)
Query: 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDI 385
+ T GHT G+ + + + R
Sbjct: 48 KCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE 107
Query: 386 CFNNTGTN--------------------FISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE 425
+G+ ++A+R ++S + D VK+W+ +
Sbjct: 108 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP-ET 166
Query: 426 HRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVA-YCVK 484
C+ T GH V + F+ G + +S D +++WD E+G CI T + ++
Sbjct: 167 ETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 224
Query: 485 FHPD------EDKQ----HLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILI 534
+ D + ++ + P H N ++ S D + +
Sbjct: 225 LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKL 284
Query: 535 FSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG----KCYIWDW 584
+ + T E G + S G +G K + D+
Sbjct: 285 WDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 91.1 bits (224), Expect = 3e-20
Identities = 34/314 (10%), Positives = 79/314 (25%), Gaps = 26/314 (8%)
Query: 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEV--YKERRCVRTYYGHRQAVRDI 385
V + IS I+ P LLL S D + +++ + + ++ +
Sbjct: 4 VQIEQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62
Query: 386 CFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN 445
F + I + + L R + ++
Sbjct: 63 NFIDNTDLQI-YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121
Query: 446 NTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYC-----VKFHPDEDKQHLDI---- 496
Y + + + + Q +
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE 181
Query: 497 -PVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKL----------NR 545
+ + AC S+D ++ + ++
Sbjct: 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241
Query: 546 KKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLW 605
+ + +A S++FSP +L + +DG W+ +T K K + + +
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVK-I 300
Query: 606 HPHEPSKVVTAGWD 619
+ + A D
Sbjct: 301 ACS-DNILCLATSD 313
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.0 bits (146), Expect = 2e-10
Identities = 28/297 (9%), Positives = 72/297 (24%), Gaps = 56/297 (18%)
Query: 370 RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEV--YKEHR 427
+ V+ + + DI + + LLL S D + +++ ++
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKS--------------LLLITSWDGSLTVYKFDIQAKNV 47
Query: 428 CVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHP 487
+ ++ + F + I G + L G + + A
Sbjct: 48 DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRI 107
Query: 488 DEDKQHLDIPVDMKYIADP-----------TMHSMPAVTSSPNNKWLACQSMDNKILIFS 536
+ I + + + ++ + + NK + +++++
Sbjct: 108 CKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGM 167
Query: 537 A--------LNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTT- 587
L + + E + + DG+ + +
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227
Query: 588 --------------KLFKKWKAHDGVCISTLWHPHEPSKVVTAG------WDAATAK 624
+L K S + P W+ T K
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.7 bits (127), Expect = 5e-08
Identities = 16/141 (11%), Positives = 34/141 (24%), Gaps = 2/141 (1%)
Query: 324 PKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVR 383
G I + PK S+D RV + + +
Sbjct: 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241
Query: 384 DICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDIC 443
+ +T + F L + D + W + + + ++ + +
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL-QTRKKIKNFAKF-NEDSVVK 299
Query: 444 FNNTGTNFISAGYDRYLKLWD 464
+ A D K
Sbjct: 300 IACSDNILCLATSDDTFKTNA 320
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 1e-06
Identities = 19/303 (6%), Positives = 63/303 (20%), Gaps = 58/303 (19%)
Query: 324 PKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVR 383
+ + + + + + ++ + ++
Sbjct: 45 KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGI 104
Query: 384 DICFNNTGTNFISAIRWFPKSAHLLLSCSM------------------------------ 413
I+A +
Sbjct: 105 CRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI 164
Query: 414 ----DCRVKLWEVY---KEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTE 466
+ +V+ + + ++ + Q + + D + + +
Sbjct: 165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224
Query: 467 SGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ 526
+ R C + + + + + ++ SP +K+L
Sbjct: 225 DQGDDYNSSKRFAFRCHRLNLKDTNL---------------AYPVNSIEFSPRHKFLYTA 269
Query: 527 SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKT 586
D I ++ R K+ K F + + + L +D
Sbjct: 270 GSDGIISCWNLQTRKKI---KNFAKF---NEDSVVKIACSDNILCLATSDDTFKTNAAID 323
Query: 587 TKL 589
+
Sbjct: 324 QTI 326
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.2 bits (92), Expect = 0.001
Identities = 10/107 (9%), Positives = 28/107 (26%), Gaps = 17/107 (15%)
Query: 319 DRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGH 378
F +++I + P+ L + D + W + + R+ ++ +
Sbjct: 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNL-QTRKKIKNFAKF 292
Query: 379 RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE 425
+ + +L + D K +
Sbjct: 293 -NEDSVVKIACSDN--------------ILCLATSDDTFKTNAAIDQ 324
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.9 bits (216), Expect = 3e-19
Identities = 39/297 (13%), Positives = 80/297 (26%), Gaps = 17/297 (5%)
Query: 327 QVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEV----YKERRCVRTYYGHRQAV 382
Q++T H + + A+ + + + C VK+W++ K +
Sbjct: 44 QINTL-NHGEVVCAVTISNPT-RHVYTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYI 100
Query: 383 RDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDI 442
R G I S + R+K C V
Sbjct: 101 RSCKLLPDGCTLIVGGEASTLSIWD--LAAPTPRIKAELTSSAPACYALAISPDSKVCFS 158
Query: 443 CFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKY 502
C ++ ++ + + S D + D+ +
Sbjct: 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL 218
Query: 503 IADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562
+ ++ P +WLA + + +N+ ++ H+ SL
Sbjct: 219 QQHDFTSQIFSLGYCPTGEWLAVGMESSNV------EVLHVNKPDKYQLHLHESCVLSLK 272
Query: 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619
F+ + +S D W + K V +S + +VT D
Sbjct: 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSV-LSCDISVDD-KYIVTGSGD 327
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (132), Expect = 1e-08
Identities = 21/226 (9%), Positives = 41/226 (18%), Gaps = 16/226 (7%)
Query: 265 EYLAKKQKKGKQSEEKPLEEKTILHIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLP 324
L + S + + + L D + +
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169
Query: 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRD 384
S + + + +
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229
Query: 385 ICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICF 444
+ + TG + ++ + H V + F
Sbjct: 230 LGYCPTGEWL----------------AVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF 273
Query: 445 NNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDED 490
G F+S G D L W T G I + D+
Sbjct: 274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDK 319
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (127), Expect = 5e-08
Identities = 11/120 (9%), Positives = 32/120 (26%), Gaps = 17/120 (14%)
Query: 303 HPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKL 362
P + + + + K + H + ++++ +S D +
Sbjct: 233 CPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNA 291
Query: 363 WEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
W + +V + +++ S D + ++EV
Sbjct: 292 WRT-PYGASIFQS-KESSSVLSCDISVDDK--------------YIVTGSGDKKATVYEV 335
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 87.2 bits (214), Expect = 1e-18
Identities = 39/295 (13%), Positives = 86/295 (29%), Gaps = 57/295 (19%)
Query: 327 QVHTWEGHTKGISAIRWFPKSAHLLLSC----SMDCRVKLWEVYKERRCVRTYYGHRQAV 382
+ I ++ + P L ++ ++ +
Sbjct: 113 NTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF 172
Query: 383 RDICFNNTGTNFISAIR----------------------WFPKSAHLLLSCSMDCRVKLW 420
+G+ + P + + S+D V++W
Sbjct: 173 PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 232
Query: 421 EVYKEHRCVR------TYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRF 474
+ R + GH+ +V + F G + +S DR +KLW+ ++ S
Sbjct: 233 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 292
Query: 475 TSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILI 534
+ C + L +V ++ N++++ S D +L
Sbjct: 293 KTPNSGTCEVTYIGHKDFVL------------------SVATTQNDEYILSGSKDRGVLF 334
Query: 535 FSALNRFKLNRKKTFEGHMVAGYAC----SLDFSPDMSYLISGDADGKCYIWDWK 585
+ + N +GH + + P+ + +G D K IW +K
Sbjct: 335 WDKKSG---NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.8 bits (169), Expect = 4e-13
Identities = 33/183 (18%), Positives = 59/183 (32%), Gaps = 16/183 (8%)
Query: 321 CFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVR------T 374
L Q G++ + P + + S+D V++W+ R +
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249
Query: 375 YYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG 434
GH+ +V + F G + +S + L + + C TY G
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSL---DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG 306
Query: 435 HRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRF-------TSRKVAYCVKFHP 487
H+ V + +S DR + WD +SG + S VA P
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 366
Query: 488 DED 490
+ +
Sbjct: 367 EYN 369
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.1 bits (162), Expect = 3e-12
Identities = 45/335 (13%), Positives = 97/335 (28%), Gaps = 45/335 (13%)
Query: 322 FLPKTQVHTWEGHTKGISA--IRWFPKSAHLLLSCSMDCRVKLWEVYKERR---CVRTYY 376
+P Q H+K I + +S L + L+ R +
Sbjct: 3 LVPYNQ---RANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSL 59
Query: 377 GHRQAVRDICFNNTGTNFISA-----IRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRT 431
H V + F+N G + + L+ S D E+ +
Sbjct: 60 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAAN---KDPENLNTSS 116
Query: 432 YYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDED- 490
+R +CF+ G + DR +++WD E+ + + + +
Sbjct: 117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD 176
Query: 491 -----------KQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALN 539
+ S + K++A S+D + ++ +
Sbjct: 177 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 236
Query: 540 RFKLNR----KKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA 595
F + R ++ GH S+ F+ D ++SG D +W+ + K
Sbjct: 237 GFLVERLDSENESGTGH--KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 294
Query: 596 HDGV-----------CISTLWHPHEPSKVVTAGWD 619
+ + ++ +++ D
Sbjct: 295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 329
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.7 bits (140), Expect = 1e-09
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 10/99 (10%)
Query: 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDI 385
T T+ GH + ++ +LS S D V W+ K + GHR +V +
Sbjct: 299 TCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDK-KSGNPLLMLQGHRNSVISV 356
Query: 386 CFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYK 424
N + ++ + S DC+ ++W+ K
Sbjct: 357 AVANGSS--------LGPEYNVFATGSGDCKARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.2 bits (87), Expect = 0.004
Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 325 KTQVHTWEGHTKGISAIRWFPKSA-----HLLLSCSMDCRVKLWEVYK 367
+ +GH + ++ S+ ++ + S DC+ ++W+ K
Sbjct: 340 GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 84.2 bits (206), Expect = 2e-18
Identities = 47/299 (15%), Positives = 88/299 (29%), Gaps = 33/299 (11%)
Query: 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICF 387
+ T GH KGI+A+ P L+S S D R+ W + H + +
Sbjct: 6 LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDN 54
Query: 388 NNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT 447
+ + K + V T ++ +
Sbjct: 55 SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD-- 112
Query: 448 GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPT 507
+K S + VA ++ L + P
Sbjct: 113 -----------IIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPL 161
Query: 508 MHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD----- 562
++ SP+ ++A + KIL++ +R + F + +
Sbjct: 162 RAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGAN 221
Query: 563 -FSPDMSYLISGDADGKCYIWDWKTT-KLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619
+ + +G D +I+ K K+ K AH + LW PS +V++G D
Sbjct: 222 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGAD 278
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.7 bits (145), Expect = 2e-10
Identities = 19/168 (11%), Positives = 49/168 (29%), Gaps = 7/168 (4%)
Query: 303 HPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKL 362
+L + T + ++ ++ +S S
Sbjct: 119 LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIA 178
Query: 363 WEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLL------SCSMDCR 416
+ + F + N IS + + + S+D
Sbjct: 179 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 238
Query: 417 VKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWD 464
+ ++ V + + ++ H+ V ++ + T +S+G D +K W+
Sbjct: 239 IFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.2 bits (128), Expect = 3e-08
Identities = 16/120 (13%), Positives = 37/120 (30%), Gaps = 15/120 (12%)
Query: 303 HPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKL 362
+ +L+S + +T L+ + S+D + +
Sbjct: 182 VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI 241
Query: 363 WEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
+ V + + ++ H+ V ++ + T L+S D +K W V
Sbjct: 242 YSVKRPMKIIKALNAHKDGVNNLLWETPST---------------LVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.8 bits (127), Expect = 4e-08
Identities = 30/252 (11%), Positives = 66/252 (26%), Gaps = 27/252 (10%)
Query: 368 ERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR 427
++T GH + + + N L+S S D R+ W H+
Sbjct: 2 HDEVLKTISGHNKGITALTVNP------------------LISGSYDGRIMEWSSSSMHQ 43
Query: 428 CVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHP 487
H + + + + D T+ +
Sbjct: 44 ------DHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVL 97
Query: 488 DEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKK 547
D L + I + P S + ++A + + +
Sbjct: 98 TNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQV---FKLSDLEVS 154
Query: 548 TFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHP 607
+ + SP +Y+ +GD GK ++D ++ ++ A I+ +
Sbjct: 155 FDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWK 214
Query: 608 HEPSKVVTAGWD 619
+
Sbjct: 215 PAEKGANEEEIE 226
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.2 bits (201), Expect = 1e-17
Identities = 41/298 (13%), Positives = 83/298 (27%), Gaps = 50/298 (16%)
Query: 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDI 385
++H +KG+ +++ ++S D +K+W+ C R GH +V +
Sbjct: 6 QRIHCRSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDK-NTLECKRILTGHTGSVLCL 61
Query: 386 CFNNTGTNFISAIRWFPKSAHLLLSCSMDCR------------------------VKLWE 421
++ S+ + +W+
Sbjct: 62 QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121
Query: 422 VYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY 481
+ + +SA DR +K+W+T + E + K
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK--R 179
Query: 482 CVKFHPDEDKQHLDIPVD----------MKYIADPTMHSMPAVTSSPNNKWLACQSMDNK 531
+ D+ + D + H +NK + + D K
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGK 239
Query: 532 ILIFSALNRFKLNRK------KTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWD 583
I ++ + +T H +G L F ++S D IWD
Sbjct: 240 IKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQFDE--FQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.1 bits (128), Expect = 3e-08
Identities = 29/201 (14%), Positives = 58/201 (28%), Gaps = 17/201 (8%)
Query: 427 RCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVA------ 480
+ + + V C +S D +K+WD + EC T +
Sbjct: 6 QRIHCRSETSKGVY--CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63
Query: 481 --YCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSAL 538
+ + + + + H + NN + S D I ++
Sbjct: 64 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123
Query: 539 NRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDG 598
+ + ++ GH A D Y++S D +W+ T + + H
Sbjct: 124 SPTDITLRRVLVGHRAAVNVV----DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR 179
Query: 599 VCISTLWHPHEPSKVVTAGWD 619
+ VV+ D
Sbjct: 180 GIA---CLQYRDRLVVSGSSD 197
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 1e-05
Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 4/69 (5%)
Query: 540 RFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGV 599
R L R G C D ++SG D IWD T + + H G
Sbjct: 2 RHSLQRIHCRSET-SKGVYC---LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGS 57
Query: 600 CISTLWHPH 608
+ +
Sbjct: 58 VLCLQYDER 66
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 77.7 bits (189), Expect = 6e-16
Identities = 40/294 (13%), Positives = 87/294 (29%), Gaps = 11/294 (3%)
Query: 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICF 387
GH K I+A+ L S + + W++ H + I
Sbjct: 5 DQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
Query: 388 NNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT 447
+ G F + K S + ++ + +
Sbjct: 64 TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDI-----AVAAC 118
Query: 448 GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPT 507
+ + + ++ + + C++ ++ L +
Sbjct: 119 YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH 178
Query: 508 MHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM 567
+ +V S N +L K++ +S N F+L ++ H +SPD
Sbjct: 179 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV--SWSPDN 236
Query: 568 SYLISGDADGKCYIWDWKTTKL--FKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619
L +G D +W+ AH ++++ +E + +V+AG D
Sbjct: 237 VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE-TTIVSAGQD 289
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 57.7 bits (137), Expect = 2e-09
Identities = 25/197 (12%), Positives = 60/197 (30%), Gaps = 5/197 (2%)
Query: 427 RCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTS--RKVAYCVK 484
+ YGH +A+ + + G SA + ++ WD +G F + +K
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 485 FHPDEDKQHLDIPVDMKYI---ADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRF 541
D + +K + S + S D I + +
Sbjct: 63 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122
Query: 542 KLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCI 601
+ ++ + + S D ++ G D K +++ + + I
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182
Query: 602 STLWHPHEPSKVVTAGW 618
+++ + + +V
Sbjct: 183 TSVAFSNNGAFLVATDQ 199
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.6 bits (129), Expect = 2e-08
Identities = 29/257 (11%), Positives = 65/257 (25%), Gaps = 21/257 (8%)
Query: 370 RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCV 429
+ YGH +A+ + + G L S + + W++
Sbjct: 3 SIDQVRYGHNKAITALSSSADGK--------------TLFSADAEGHINSWDISTGISNR 48
Query: 430 RTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGE-----CISRFTSRKVAYCVK 484
H + I + G F + D + SG ++ +S+ + V
Sbjct: 49 VFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVS 108
Query: 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLN 544
D + + T + +S + +
Sbjct: 109 ADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA 168
Query: 545 RKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTL 604
+ + S+ FS + ++L++ D K + +
Sbjct: 169 SVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVA 228
Query: 605 WHPHEP--SKVVTAGWD 619
P ++ T D
Sbjct: 229 CVSWSPDNVRLATGSLD 245
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.9 bits (122), Expect = 2e-07
Identities = 21/163 (12%), Positives = 42/163 (25%), Gaps = 1/163 (0%)
Query: 303 HPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKL 362
++ S+ + + + + S +
Sbjct: 134 PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF 193
Query: 363 WEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
+ R V Y + T A + L + S+D V +W +
Sbjct: 194 LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 253
Query: 423 YK-EHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWD 464
K + H + + T +SAG D +K W+
Sbjct: 254 NKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.6 bits (90), Expect = 0.002
Identities = 13/103 (12%), Positives = 25/103 (24%), Gaps = 15/103 (14%)
Query: 321 CFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-ERRCVRTYYGHR 379
+ A + L + S+D V +W + K + H
Sbjct: 209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHA 268
Query: 380 QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
+ + ++S D +K W V
Sbjct: 269 MSSVNSVIWLNE--------------TTIVSAGQDSNIKFWNV 297
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.5 bits (186), Expect = 2e-15
Identities = 49/355 (13%), Positives = 110/355 (30%), Gaps = 68/355 (19%)
Query: 322 FLPKTQVHTWEGHTKG-ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQ 380
F+P Q T GH I+ +++ + +++ + D +++++ ++ + GH
Sbjct: 1 FVP--QRTTLRGHMTSVITCLQF---EDNYVITGADDKMIRVYDS-INKKFLLQLSGHDG 54
Query: 381 AVRDICFNNTGT-----------------------------NFISAIRWFPKSAHLLLSC 411
V + + + G K+ +++
Sbjct: 55 GVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG 114
Query: 412 SMDCRVKLWEVYKE----------------------HRCVRTYYGHRQAVRDICFNNTGT 449
S D + +W++ KE V GH +VR + G
Sbjct: 115 SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGN 172
Query: 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMH 509
+S YD L +WD +C+ + + E K+ + +D +
Sbjct: 173 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 232
Query: 510 SMPAVTSSPNNKWLACQSMDNKILIFSA----LNRFKLNRKKTFEGHMVAGYACSLDFSP 565
T + + + +K L+ +A + + N + + F
Sbjct: 233 GELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYV 292
Query: 566 DMSYLISGDADGKCYIWDWKTTKLFKK-WKAHDGVCISTLWHPHEPSKVVTAGWD 619
+ L+SG + + I++ ++ KL S + + V D
Sbjct: 293 SDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK--TLVAAVEKD 344
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.1 bits (133), Expect = 1e-08
Identities = 36/278 (12%), Positives = 93/278 (33%), Gaps = 20/278 (7%)
Query: 321 CFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQ 380
++ K+ +++ S D + +W++ KE H
Sbjct: 81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 140
Query: 381 AVRDI------CFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG 434
+ F ++++R ++++S S D + +W+V + +C+ G
Sbjct: 141 PLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDV-AQMKCLYILSG 199
Query: 435 HRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL 494
H + +++ ISA D +++WD E+GE + + D+
Sbjct: 200 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSA 259
Query: 495 DIPVDMKYIADPTMHSMP--------AVTSSPNNKWLACQSMDNKILIFSALNRFKLNRK 546
++ A+T+ + + +N+ I++ + +
Sbjct: 260 AADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLV--H 317
Query: 547 KTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDW 584
A S++F + + + + DG+ ++
Sbjct: 318 ANILKD--ADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.0 bits (185), Expect = 5e-15
Identities = 44/358 (12%), Positives = 87/358 (24%), Gaps = 69/358 (19%)
Query: 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDI 385
+ + H I ++ +SCS D +K+W+ + V
Sbjct: 5 ATANAGKAHDADIFSVSACNS---FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61
Query: 386 CFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYK---------EHRCVRTYYGHR 436
++ + + AI L+ + S + + + + E + +
Sbjct: 62 GLHH--VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKK 119
Query: 437 QAVRDICFNNTGTN-----FISAGYDRYLKLWDTES-------------------GECIS 472
+ + + + ++ +W G S
Sbjct: 120 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVES 179
Query: 473 RFTSRKVAYCVKFHPDE-------------DKQHLDIPVDMKYIADPTMHSMPAVTS--- 516
T + A V + P+ +++ ++ S
Sbjct: 180 PMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 239
Query: 517 SPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEG-----------HMVAGYACSLDFSP 565
SP LA N + R + + + SL F+
Sbjct: 240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND 299
Query: 566 DMSYLISGDADGKCYIWDWKTTKLFKKWKAHDG----VCISTLWHPHEPSKVVTAGWD 619
L S DGK WD KT + H H S +D
Sbjct: 300 SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 357
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.5 bits (173), Expect = 8e-14
Identities = 25/272 (9%), Positives = 69/272 (25%), Gaps = 18/272 (6%)
Query: 328 VHTWEGH-TKGISAIRWFP-KSAHLLLSCSMDCRVKLWEVYKERRCV-------RTYYGH 378
V + GH + ++ +++ P K + L S +V +W ++ +
Sbjct: 55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL 114
Query: 379 RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQA 438
+ DI ++ G + S + ++ +
Sbjct: 115 AGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMR 174
Query: 439 VRDICFNNTGTNFISAGYDRYLKLWDTE-------SGECISRFTSRKVAYCVKFHPDEDK 491
+ + + + + E +
Sbjct: 175 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 234
Query: 492 QHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEG 551
+ + S +++ A D I ++ + K +K T +
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWD-VTTSKCVQKWTLDK 293
Query: 552 HMVAGYACSLDFSPDMSYLISGDADGKCYIWD 583
+ + + + +IS DG ++
Sbjct: 294 QQLGNQQVGVVATGN-GRIISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.4 bits (165), Expect = 9e-13
Identities = 37/311 (11%), Positives = 84/311 (27%), Gaps = 42/311 (13%)
Query: 338 ISAIRWFPKSAHLLLSCSMDCRVKLWEVY-KERRCVRTYYGHRQAVRDICFNNTGTNFIS 396
+ + + P + + C V+ + + V + GH G++ ++
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH------------GSSVVT 67
Query: 397 AIRWFP-KSAHLLLSCSMDCRVKLWEVYKEHRCV-------RTYYGHRQAVRDICFNNTG 448
+++ P K + L S +V +W + + + DI ++ G
Sbjct: 68 TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG 127
Query: 449 TNFISAGY--DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADP 506
G D + +SG + + D +
Sbjct: 128 RRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFY 187
Query: 507 TMHSMP----------------AVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFE 550
V SP++ ++ + + + +
Sbjct: 188 QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD 247
Query: 551 GHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGV--CISTLWHPH 608
V G +L + D + AD +WD T+K +KW
Sbjct: 248 QEPVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT 306
Query: 609 EPSKVVTAGWD 619
++++ D
Sbjct: 307 GNGRIISLSLD 317
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 1e-06
Identities = 16/192 (8%), Positives = 48/192 (25%), Gaps = 5/192 (2%)
Query: 306 HDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEV 365
D+ + + ++ V
Sbjct: 119 SDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV 178
Query: 366 YKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE 425
+ V + ++ +F+ + + P S +++ D ++ ++
Sbjct: 179 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 238
Query: 426 HRCVRTYYGHRQAVRDIC--FNNTGTNFISAGYDRYLKLWDTESGECISRFT---SRKVA 480
I F + G D +++WD + +C+ ++T +
Sbjct: 239 EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 298
Query: 481 YCVKFHPDEDKQ 492
V + +
Sbjct: 299 QQVGVVATGNGR 310
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (113), Expect = 3e-06
Identities = 10/102 (9%), Positives = 31/102 (30%), Gaps = 12/102 (11%)
Query: 321 CFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQ 380
+ + + + D +++W+V +CV+ + +Q
Sbjct: 236 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV-TTSKCVQKWTLDKQ 294
Query: 381 AVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
+ + + ++S S+D + +E+
Sbjct: 295 QLGNQQ-----------VGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 69.5 bits (168), Expect = 5e-13
Identities = 29/271 (10%), Positives = 66/271 (24%), Gaps = 29/271 (10%)
Query: 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDI 385
QVH + H ++ + W P S + +++C D +W +
Sbjct: 42 VQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARC 100
Query: 386 CFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN 445
+ + D V V + H +V +
Sbjct: 101 VRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 160
Query: 446 NTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIAD 505
+++ E R + F +
Sbjct: 161 CDFK----------CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS------------ 198
Query: 506 PTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP 565
+ + V S N +A S D+ + + A + ++ F
Sbjct: 199 SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM-----AVATLASETLPLLAVTFIT 253
Query: 566 DMSYLISGDADGKCYIWDWKTTKLFKKWKAH 596
+ S + +G D ++ + + +
Sbjct: 254 ESSLVAAG-HDCFPVLFTYDSAAGKLSFGGR 283
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 66.8 bits (161), Expect = 4e-12
Identities = 36/274 (13%), Positives = 67/274 (24%), Gaps = 48/274 (17%)
Query: 378 HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVY-KEHRCVRTYYGHR 436
+ + +N T + C + V ++E + V H
Sbjct: 6 LVEPISCHAWNKDRT--------------QIAICPNNHEVHIYEKSGNKWVQVHELKEHN 51
Query: 437 QAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQH--- 493
V + + ++ G DR +W + ++ + +
Sbjct: 52 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFA 111
Query: 494 ------------LDIPVDMKYIADPTMHSMPAVTSSPNNKWLA---CQSMDNKILIFSAL 538
+ D V S + S D K IFSA
Sbjct: 112 VGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY 171
Query: 539 NRFKLNRKKT-------------FEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWK 585
+ R FE G+ + FS + S + D + D
Sbjct: 172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 231
Query: 586 TTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619
+ ++ + S +V AG D
Sbjct: 232 KKMAVATLASETLPLLAVTFITE--SSLVAAGHD 263
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.9 bits (138), Expect = 2e-09
Identities = 14/115 (12%), Positives = 35/115 (30%), Gaps = 3/115 (2%)
Query: 513 AVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLIS 572
+ + +A ++++ I+ K + + H G +D++PD + +++
Sbjct: 12 CHAWNKDRTQIAICPNNHEVHIYEKSGN-KWVQVHELKEH--NGQVTGVDWAPDSNRIVT 68
Query: 573 GDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQD 627
D Y+W K + K G + +
Sbjct: 69 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 123
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.2 bits (110), Expect = 7e-06
Identities = 32/250 (12%), Positives = 72/250 (28%), Gaps = 37/250 (14%)
Query: 342 RWFPKSAHLLLSCSMDCRVKLWEVY-KERRCVRTYYGHRQAVRDICFNNTGTNFISAIR- 399
+ ++ LL + S D + +++ Y KE + ++ +
Sbjct: 147 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG 206
Query: 400 -WFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDR 458
F + + S D V L + + + T ++ ++AG+D
Sbjct: 207 VCFSANGSRVAWVSHDSTVCLADA--DKKMAVATLASETLPLLAVTFITESSLVAAGHDC 264
Query: 459 YLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP 518
+ L+ +S F LD+P +
Sbjct: 265 FPVLFTYDSAAGKLSFGG----------------RLDVP-----------KQSSQRGLTA 297
Query: 519 NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGK 578
++ Q++D K + + + V+ + S + DG
Sbjct: 298 RERF---QNLDKKASSEGSAAAGA--GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG 352
Query: 579 CYIWDWKTTK 588
IWD ++ +
Sbjct: 353 MSIWDVRSLE 362
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 19/153 (12%), Positives = 46/153 (30%), Gaps = 21/153 (13%)
Query: 321 CFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQ 380
++ ++ + + + L++ DC L+ Y ++ G
Sbjct: 227 LADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLF-TYDSAAGKLSFGGRLD 285
Query: 381 AVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVR 440
+ + ++A F ++D + + + H+ +V
Sbjct: 286 VPKQ-----SSQRGLTARERF---------QNLDKKASSEGSAAAGAGLDS--LHKNSVS 329
Query: 441 DICF----NNTGTNFISAGYDRYLKLWDTESGE 469
I + F + G D + +WD S E
Sbjct: 330 QISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 68.8 bits (166), Expect = 5e-13
Identities = 35/277 (12%), Positives = 77/277 (27%), Gaps = 12/277 (4%)
Query: 350 LLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISA-----IRWFPKS 404
+ C+ V V Y H + +G S +R + +
Sbjct: 31 KIQYCN-GTSVYTVPV-GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTT 88
Query: 405 AHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWD 464
+ + + ++ + + AV + G
Sbjct: 89 QT---THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQ 145
Query: 465 TESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLA 524
+ + SR + P K + +V +P+ A
Sbjct: 146 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFA 205
Query: 525 CQSMDNKILIFSALN--RFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIW 582
D I++++ ++ + + + + +G L +SPD + + S AD IW
Sbjct: 206 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW 265
Query: 583 DWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619
+ T K+ K + L +V+ +
Sbjct: 266 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 302
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 68.4 bits (165), Expect = 8e-13
Identities = 38/266 (14%), Positives = 80/266 (30%), Gaps = 13/266 (4%)
Query: 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY-GHRQAVRD 384
T + H+ + + P S + S + V++W+ + ++T V+D
Sbjct: 49 TDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKD 107
Query: 385 ICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICF 444
I +++ + + H+ L + L + V +
Sbjct: 108 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD 167
Query: 445 NNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY-------CVKFHPDEDKQHLDIP 497
+NT F + + R+ + + + D +
Sbjct: 168 DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF 227
Query: 498 VDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGY 557
D S+ +T SP+ +A S D I I++ + K+ +KT
Sbjct: 228 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN-VATLKV--EKTIPVGTRIED 284
Query: 558 ACSLDFSPDMSYLISGDADGKCYIWD 583
L L+S A+G +
Sbjct: 285 QQ-LGIIWTKQALVSISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 52.2 bits (123), Expect = 1e-07
Identities = 15/151 (9%), Positives = 33/151 (21%), Gaps = 3/151 (1%)
Query: 317 PPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY 376
K + +
Sbjct: 163 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT 222
Query: 377 GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHR 436
D N + + + W P + S S D +K+W V + +T
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNV-ATLKVEKTIPVGT 280
Query: 437 Q-AVRDICFNNTGTNFISAGYDRYLKLWDTE 466
+ + + T +S + ++ + E
Sbjct: 281 RIEDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.9 bits (104), Expect = 3e-05
Identities = 12/107 (11%), Positives = 23/107 (21%), Gaps = 14/107 (13%)
Query: 315 DTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRT 374
+ G + + S S D +K+W V + +T
Sbjct: 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV-ATLKVEKT 275
Query: 375 YYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWE 421
T + L+S S + +
Sbjct: 276 IPVG-------------TRIEDQQLGIIWTKQALVSISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.5 bits (103), Expect = 4e-05
Identities = 14/217 (6%), Positives = 39/217 (17%), Gaps = 9/217 (4%)
Query: 283 EEKTILHIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIR 342
+ P S + + GH
Sbjct: 78 VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT 137
Query: 343 WFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFP 402
+ + + + G +
Sbjct: 138 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY 197
Query: 403 KSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAV-------RDICFNNTGTNFISAG 455
L + + + + + + ++ GT SA
Sbjct: 198 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 257
Query: 456 YDRYLKLWDTESGECISRFT--SRKVAYCVKFHPDED 490
D+ +K+W+ + + +R + +
Sbjct: 258 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ 294
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 65.9 bits (159), Expect = 6e-12
Identities = 31/310 (10%), Positives = 72/310 (23%), Gaps = 41/310 (13%)
Query: 326 TQVHTWE-GHTKGISAIRWFPKSAHLLLSCSMDCRVKLW-----EVYKERRCVRTYYGHR 379
T + G P + + + + +
Sbjct: 29 TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVG 88
Query: 380 QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAV 439
+++ + G + + + + V E + VRT+ RQ V
Sbjct: 89 RSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQ-V 147
Query: 440 RDICFNNTGTNFISAGYDRYLKLWDTESGECISRF------------------------- 474
+ + G+ +++ D ++G+
Sbjct: 148 YLMRAADDGSLYVAGPDIY---KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPR 204
Query: 475 -TSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWL--ACQSMDNK 531
+ +F D+ + D + + +S +
Sbjct: 205 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP 264
Query: 532 ILIFSALNRFKLNRKKTFE---GHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK 588
I+ LNR K + + + F L G +++ T +
Sbjct: 265 NQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 324
Query: 589 LFKKWKAHDG 598
K K G
Sbjct: 325 KVKNIKLPGG 334
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 45.1 bits (105), Expect = 3e-05
Identities = 23/205 (11%), Positives = 43/205 (20%), Gaps = 33/205 (16%)
Query: 444 FNNTGTNFISAGYDRYLKLWDTESGECISRFT--SRKVAYCVKFHPD------------- 488
I Y L + D S + PD
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 489 -----EDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKL 543
D ++ + SM + SP+ K + + L + +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 544 NR---------KKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK 594
K + + + D S ++G K + K T
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183
Query: 595 AHDGVCIS----TLWHPHEPSKVVT 615
+ + W P +
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFS 208
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 60.3 bits (144), Expect = 5e-10
Identities = 25/286 (8%), Positives = 56/286 (19%), Gaps = 43/286 (15%)
Query: 327 QVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDIC 386
+ +E + + A+ + D + + + + D
Sbjct: 77 KAEKFEENLGNVFAMGVDRN--GKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFT 134
Query: 387 FNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN 446
++ + + ++++ E R + F+
Sbjct: 135 ISDNSRFIAYGFPLKHGETD----GYVMQAIHVYDM--EGRKIFAATTENSHDYAPAFDA 188
Query: 447 TGTNFISAGYDRYLKLWDTESGECISRFTSRKVA--------YCVKFHPDE--------- 489
N Y D S+ K P
Sbjct: 189 DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYD 248
Query: 490 ----DKQHLDIPVDMKYIADPTMHSMP-----AVTSSPNNKWLACQSMDNKILIFSALNR 540
K+ I VD + +L +
Sbjct: 249 LNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV--- 305
Query: 541 FKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKT 586
+ + L S D ++ DGK Y + +
Sbjct: 306 ----KTRKVTEV--KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 53.7 bits (127), Expect = 5e-08
Identities = 12/155 (7%), Positives = 34/155 (21%), Gaps = 18/155 (11%)
Query: 319 DRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSM--DCRVKLWEVYKERRCVRTYY 376
+ F ++ + + P+S D + + + R
Sbjct: 211 NFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMII 270
Query: 377 GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHR 436
++ + A + ++V R +
Sbjct: 271 PLESSILIYSVP-----------VHGEFAAYYQGAPEKGVLLKYDVKT-----RKVTEVK 314
Query: 437 QAVRDICFNNTGTNFISAGYDRYLKLWDTESGECI 471
+ D+ + + D + + E E
Sbjct: 315 NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDE 349
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 56.0 bits (133), Expect = 1e-08
Identities = 27/315 (8%), Positives = 62/315 (19%), Gaps = 40/315 (12%)
Query: 326 TQVHTWEGHTKGIS--AIRWFPKSAHLLLSCSMDCRVKLWEV----YKERRCVRTYYGHR 379
G + P + + + ++ R + T
Sbjct: 22 AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81
Query: 380 QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAV 439
+++ + G E R + + +
Sbjct: 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRV----ALYDAETLSRRKAFEAPRQI 137
Query: 440 RDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVD 499
+ + G+ G D ++ + G + + PD
Sbjct: 138 TMLAWARDGSKLYGLGRDLHVMDPEA--GTLVEDKPIQSWEAETYAQPDVLAVWNQHESS 195
Query: 500 MKYIADPTMHSMPAVT---------------------------SSPNNKWLACQSMDNKI 532
A +
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255
Query: 533 LIFSA-LNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFK 591
L F L + + + + S++ S D S + G A G +D +T +
Sbjct: 256 FGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG 315
Query: 592 KWKAHDGVCISTLWH 606
+ +S
Sbjct: 316 QVDLPGNASMSLASV 330
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 43.3 bits (100), Expect = 9e-05
Identities = 19/194 (9%), Positives = 40/194 (20%), Gaps = 28/194 (14%)
Query: 451 FISAGYDRYLKLWDTESGECISRFT---SRKVAYCVKFHPDEDK---------------- 491
++ L + DTE T + P
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 492 -QHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFK------LN 544
+ + + S+ SP+ K LA ++ + +
Sbjct: 64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123
Query: 545 RKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTL 604
+ L ++ D S L D ++ D + L + +
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYA 181
Query: 605 WHPHEPSKVVTAGW 618
Sbjct: 182 QPDVLAVWNQHESS 195
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 52.6 bits (124), Expect = 1e-07
Identities = 18/285 (6%), Positives = 49/285 (17%), Gaps = 18/285 (6%)
Query: 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRD 384
T P + ++ + V + + G
Sbjct: 22 NKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVA 80
Query: 385 ICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICF 444
+ + + + S + + G + V +
Sbjct: 81 VSPDGKQVYVTNMASSTLSVID---TTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGD 137
Query: 445 NNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIA 504
KV + +
Sbjct: 138 KTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK 197
Query: 505 DPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564
S AV ++ + K+ + +
Sbjct: 198 VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI--TARIPVG---PDPAGIAVT 252
Query: 565 PDMSYL-ISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPH 608
PD + ++ + D T + ++ +P+
Sbjct: 253 PDGKKVYVALSFCNTVSVIDTATNTITAT--------MAVGKNPY 289
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 42.2 bits (97), Expect = 2e-04
Identities = 11/187 (5%), Positives = 33/187 (17%), Gaps = 7/187 (3%)
Query: 289 HIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSA 348
T P + + KT I+ +
Sbjct: 102 DTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPK 161
Query: 349 HLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLL 408
+ ++ + T + +G +
Sbjct: 162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVT---- 217
Query: 409 LSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTN-FISAGYDRYLKLWDTES 467
+ ++ I G +++ + + + DT +
Sbjct: 218 -NVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275
Query: 468 GECISRF 474
+
Sbjct: 276 NTITATM 282
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.8 bits (117), Expect = 8e-07
Identities = 16/166 (9%), Positives = 42/166 (25%), Gaps = 16/166 (9%)
Query: 324 PKTQVHTWEGHTKGISAIRWFPKSA-----HLLLSCSMDCRVKLWEVY-KERRCVRTYYG 377
+ A L+ + ++ ++ + + +
Sbjct: 177 TEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEA 236
Query: 378 HRQAVRDICFNNTGTNFISA------IRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRT 431
+A R + G ++ I + V + + K +
Sbjct: 237 LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA-KTGERLAK 295
Query: 432 YYGHRQAVRDICFNNTGTN--FISAGYDRYLKLWDTESGECISRFT 475
+ + I + + + D+ L + D ESGE +
Sbjct: 296 FEMGH-EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN 340
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.9 bits (107), Expect = 2e-05
Identities = 14/197 (7%), Positives = 41/197 (20%), Gaps = 2/197 (1%)
Query: 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKG-ISAIRWFPKSAHLLL 352
T + D + + + +
Sbjct: 114 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKV 173
Query: 353 SCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS 412
+ + ++ H + T + S +
Sbjct: 174 AFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPA 233
Query: 413 MDCRVKLW-EVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECI 471
++ + + HR R + + R++ + D ++GE +
Sbjct: 234 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL 293
Query: 472 SRFTSRKVAYCVKFHPD 488
++F + D
Sbjct: 294 AKFEMGHEIDSINVSQD 310
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.9 bits (94), Expect = 5e-04
Identities = 15/203 (7%), Positives = 41/203 (20%), Gaps = 24/203 (11%)
Query: 445 NNTGTNFISAGYDRYLKLWDTESGECISRFTS--------------------RKVAYCVK 484
+ + Y++++D + + K +
Sbjct: 65 STVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ 124
Query: 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLN 544
F P +D+ + + + + + + + +
Sbjct: 125 FSPAPAVGVVDLE-GKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI 183
Query: 545 RKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKL--FKKWKAHDGVCIS 602
+S L+ GK + D + +A +
Sbjct: 184 THTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA 243
Query: 603 TLWHPHEPSKVVTAGWDAATAKV 625
W P V +
Sbjct: 244 DGWRPGGWQ-QVAYHRALDRIYL 265
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.6 bits (88), Expect = 0.003
Identities = 11/111 (9%), Positives = 29/111 (26%), Gaps = 22/111 (19%)
Query: 513 AVTSSPNNKWL-----ACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM 567
+P+ + + A + + + G + G+ + + D
Sbjct: 6 LEAPAPDARRVYVNDPAHFAAVTQQFVIDG-------EAGRVIGMIDGGFLPNPVVADDG 58
Query: 568 SYL----------ISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPH 608
S++ G+ ++D T + D +P
Sbjct: 59 SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPW 109
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.2 bits (87), Expect = 0.004
Identities = 24/189 (12%), Positives = 44/189 (23%), Gaps = 26/189 (13%)
Query: 449 TNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTM 508
+ + D E+G I + D +IA
Sbjct: 19 NDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-NPVVADDG-----------SFIA---- 62
Query: 509 HSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGH--MVAGYACSLDFSPD 566
+S +A + + +F + + + +V Y +PD
Sbjct: 63 ------HASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD 116
Query: 567 MSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626
L+ + K +K V P P D + AKV
Sbjct: 117 GKTLLFYQFSPAPAVGVVDLEG--KAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVA 174
Query: 627 DANIVKIAV 635
+
Sbjct: 175 FGTEGTPEI 183
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 49.8 bits (118), Expect = 1e-06
Identities = 20/191 (10%), Positives = 41/191 (21%), Gaps = 38/191 (19%)
Query: 440 RDICFNNTGTN--FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIP 497
+ N ++ + L D + E + + + +
Sbjct: 22 TQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRL------------ 69
Query: 498 VDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIF--SALNRFKLNRKKTFEGHMVA 555
S + ++L D K+ + + K
Sbjct: 70 -------------------SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA--R 108
Query: 556 GYACSLDFSPDMSYLI-SGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVV 614
S + Y I + I D +T + K +HP +
Sbjct: 109 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI 168
Query: 615 TAGWDAATAKV 625
A V
Sbjct: 169 LASHYRPEFIV 179
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 46.9 bits (110), Expect = 9e-06
Identities = 19/183 (10%), Positives = 47/183 (25%), Gaps = 34/183 (18%)
Query: 440 RDICFNNTGTN--FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIP 497
+ + N ++ + L D +S + + + + +
Sbjct: 22 KKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRM------------ 69
Query: 498 VDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGY 557
S + ++L D +I + + + G
Sbjct: 70 -------------------SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV 110
Query: 558 ACSLDFSPDMSYLISGDADGKCY-IWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTA 616
S + Y I+G + I D +T + + + +HP + A
Sbjct: 111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA 170
Query: 617 GWD 619
+
Sbjct: 171 SHE 173
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 43.0 bits (100), Expect = 2e-04
Identities = 15/124 (12%), Positives = 29/124 (23%), Gaps = 11/124 (8%)
Query: 501 KYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560
+ N + +I + ++ + T G+ V
Sbjct: 13 VLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT--GYAVHI---- 66
Query: 561 LDFSPDMSYLISGDADGKCYIWDWKTTKLFKKW-----KAHDGVCISTLWHPHEPSKVVT 615
S YL+ D + + D + K V S + +
Sbjct: 67 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAG 126
Query: 616 AGWD 619
A W
Sbjct: 127 AYWP 130
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 40.2 bits (92), Expect = 0.001
Identities = 28/279 (10%), Positives = 58/279 (20%), Gaps = 22/279 (7%)
Query: 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEV--YKERRCVRTYYGHRQAVRDICFNNT 390
+ + P +L + + RV + + ++ I ++
Sbjct: 34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQ 93
Query: 391 GTNFISAIRWFPKSAHLLLSCSMDCRVKLW--------EVYKEHRCVRTYYGHRQAVRDI 442
G + L + V + + R
Sbjct: 94 GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRIC 153
Query: 443 CFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKY 502
F + + A + + + + + AYCV
Sbjct: 154 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI 213
Query: 503 IADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKL--------NRKKTFEGHM- 553
T+ MP S + D + L + + EG
Sbjct: 214 ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP 273
Query: 554 VAGYACSLDFSPDMSYLISGDADG---KCYIWDWKTTKL 589
+ YLI+ Y + L
Sbjct: 274 TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 312
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1019 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.95 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.95 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.95 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.93 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.93 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.93 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.93 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.93 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.93 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.91 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.89 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.87 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.86 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.85 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.82 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.81 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.78 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.77 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.77 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.75 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.74 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.71 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.7 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.65 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.62 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.6 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.57 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.53 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.48 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.27 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.25 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.15 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.13 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.13 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.84 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.83 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.76 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.75 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.73 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.61 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.59 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.48 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.47 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.33 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.33 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.33 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.25 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.2 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.07 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.03 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.82 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.74 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.45 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.32 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.1 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.82 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.44 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 95.9 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.85 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.7 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 95.23 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.06 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 94.87 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 93.91 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 93.47 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 92.77 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 92.37 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 92.16 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 91.94 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 91.69 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 91.29 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 90.63 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 90.54 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 90.03 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 88.08 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 87.88 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 86.42 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 84.56 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 83.67 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 83.05 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 81.22 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1e-33 Score=307.70 Aligned_cols=277 Identities=25% Similarity=0.444 Sum_probs=235.8
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEE----------
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISA---------- 397 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~---------- 397 (1019)
.++|+||+++|++|+|+|+ +.+|+||+.||+|+|||+ ..++++.++.+|...|.+++|++++..++.+
T Consensus 10 ~~~L~GH~~~I~~l~~sp~-~~~l~s~s~Dg~i~iWd~-~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (317)
T d1vyhc1 10 KYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDY-ETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 87 (317)
T ss_dssp SCEEECCSSCEEEEEECSS-SSEEEEEESSSCEEEEET-TTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred cEEEcCCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEC-CCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccc
Confidence 4689999999999999996 789999999999999999 5567888999999999999999999776543
Q ss_pred -------------------EeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCC
Q psy307 398 -------------------IRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDR 458 (1019)
Q Consensus 398 -------------------i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg 458 (1019)
+.|+|+ +..+++++.|+.+++||+ ..+.....+.+|...+.+++|++++.+|++++.|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 165 (317)
T d1vyhc1 88 FQGFECIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEV-QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 165 (317)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEET-TTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ccccccccccccccccceeeeccCC-CceEEeeccCcceeEeec-ccceeeeEEccCCCcceeeecccCCCEEEEEeCCC
Confidence 334444 467899999999999999 56678888999999999999999999999999999
Q ss_pred eEEEEECCCCceEEEEecC-CceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEc
Q psy307 459 YLKLWDTESGECISRFTSR-KVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSA 537 (1019)
Q Consensus 459 ~I~lWDl~t~~~i~~~~~~-~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~ 537 (1019)
.|++|++.+++.+..+..+ ..+.++.++|+........ ............+.++++++.|+.|++||+
T Consensus 166 ~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 234 (317)
T d1vyhc1 166 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISE-----------ATGSETKKSGKPGPFLLSGSRDKTIKMWDV 234 (317)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGG-----------CCSCC-------CCEEEEEETTSEEEEEET
T ss_pred eEEEEeeccceeeEEEecCCCCceEEEEeeccccceeec-----------cccceeeeeccCCceeEeccCCCEEEEEEC
Confidence 9999999999999888754 6788999998865433221 122233445567889999999999999999
Q ss_pred cCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEe
Q psy307 538 LNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAG 617 (1019)
Q Consensus 538 ~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s 617 (1019)
.++ ..+..+.+|. ..|.+++|+|+|++|++|+.||.|+|||+.+++++.++.+|.+.|++++|+|++ .+|+|||
T Consensus 235 ~~~---~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~-~~l~s~s 308 (317)
T d1vyhc1 235 STG---MCLMTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA-PYVVTGS 308 (317)
T ss_dssp TTT---EEEEEEECCS--SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSS-SCEEEEE
T ss_pred CCC---cEEEEEeCCC--CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEe
Confidence 887 4457788887 779999999999999999999999999999999999999999999999999998 6899999
Q ss_pred CCCcEEEE
Q psy307 618 WDAATAKV 625 (1019)
Q Consensus 618 ~Dg~I~iw 625 (1019)
.||+|++|
T Consensus 309 ~Dg~i~iW 316 (317)
T d1vyhc1 309 VDQTVKVW 316 (317)
T ss_dssp TTSEEEEE
T ss_pred CCCeEEEe
Confidence 99999877
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.7e-32 Score=298.60 Aligned_cols=251 Identities=22% Similarity=0.302 Sum_probs=213.0
Q ss_pred ccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCC
Q psy307 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKS 404 (1019)
Q Consensus 325 ~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~ 404 (1019)
.+..++|+||++.|++|+|+|+ +.+|+||+.||+|+|||+ ..++.+..+.+|...|.+++|+|++
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~-~~~l~sgs~Dg~v~iWd~-~~~~~~~~~~~~~~~v~~v~~~~~~------------- 109 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDS-YTTNKVHAIPLRSSWVMTCAYAPSG------------- 109 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEET-TTTEEEEEEECSCSCEEEEEECTTS-------------
T ss_pred eeeeEEECCCCCCEEEEEECCC-CCEEEEEECCCceeeeec-ccceeEEEEecccccEEeeEeeccc-------------
Confidence 3567899999999999999995 889999999999999999 5667889999999999999999999
Q ss_pred CcEEEEEeCCCcEEEEEccCC--------------------------------------------CeEEEEEccccccEe
Q psy307 405 AHLLLSCSMDCRVKLWEVYKE--------------------------------------------HRCVRTYYGHRQAVR 440 (1019)
Q Consensus 405 ~~~L~sgs~Dg~I~IWDl~~~--------------------------------------------~~~~~~l~~H~~~V~ 440 (1019)
.++++|+.|+.+++|+.... .........+...+.
T Consensus 110 -~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (340)
T d1tbga_ 110 -NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188 (340)
T ss_dssp -SEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEE
T ss_pred -eeeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEe
Confidence 68888888888888886321 111222234556788
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC
Q psy307 441 DICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN 520 (1019)
Q Consensus 441 sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg 520 (1019)
...+.+.+..+++++.|+.|++||+++++++.++..+ ...|.+++|+|++
T Consensus 189 ~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h------------------------------~~~i~~v~~~p~~ 238 (340)
T d1tbga_ 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH------------------------------ESDINAICFFPNG 238 (340)
T ss_dssp EEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCC------------------------------SSCEEEEEECTTS
T ss_pred eeccccccceeEEeecCceEEEEECCCCcEEEEEeCC------------------------------CCCeEEEEECCCC
Confidence 8888999999999999999999999999887766542 3456778888999
Q ss_pred CEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCE
Q psy307 521 KWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVC 600 (1019)
Q Consensus 521 ~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V 600 (1019)
++|++|+.||.|++|++.... ....+........+.+++|+|+|++|++|+.||.|+|||+.+++++.++.+|.+.|
T Consensus 239 ~~l~s~s~d~~i~~~~~~~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V 315 (340)
T d1tbga_ 239 NAFATGSDDATCRLFDLRADQ---ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315 (340)
T ss_dssp SEEEEEETTSCEEEEETTTTE---EEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred CEEEEEeCCCeEEEEeecccc---cccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCE
Confidence 999999999999999998763 33444444444679999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 601 ISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 601 ~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
++++|+|++ .+|+|||.||+|++|
T Consensus 316 ~~l~~s~d~-~~l~s~s~Dg~v~iW 339 (340)
T d1tbga_ 316 SCLGVTDDG-MAVATGSWDSFLKIW 339 (340)
T ss_dssp EEEEECTTS-SCEEEEETTSCEEEE
T ss_pred EEEEEeCCC-CEEEEEccCCEEEEe
Confidence 999999998 589999999999877
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-31 Score=299.49 Aligned_cols=275 Identities=15% Similarity=0.240 Sum_probs=234.7
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC-CcEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-ERRC 371 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~-~~~~ 371 (1019)
.++++|+.+++++ |+.|++|+....... .........+|.+.|++++|+|+ +.+|++|+.||.|++||+.. ..+.
T Consensus 58 ~fs~~g~~latg~-dg~V~iWd~~~~~~~--~~~~~~~~~~h~~~I~~v~~s~d-g~~l~s~~~dg~i~iwd~~~~~~~~ 133 (337)
T d1gxra_ 58 TISNPTRHVYTGG-KGCVKVWDISHPGNK--SPVSQLDCLNRDNYIRSCKLLPD-GCTLIVGGEASTLSIWDLAAPTPRI 133 (337)
T ss_dssp EECSSSSEEEEEC-BSEEEEEETTSTTCC--SCSEEEECSCTTSBEEEEEECTT-SSEEEEEESSSEEEEEECCCC--EE
T ss_pred EECCCCCEEEEEE-CCEEEEEEccCCccc--ceeEEeeecCCCCcEEEEEEcCC-CCEEEEeeccccccccccccccccc
Confidence 4678999999987 899999987653321 12234456789999999999996 78999999999999999853 4456
Q ss_pred EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEE
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNF 451 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l 451 (1019)
...+.+|...|.+++|+|++ .++++++.|+.|++|++ ....+.....+|...|.+++|++++..+
T Consensus 134 ~~~~~~~~~~v~~~~~~~~~--------------~~l~s~~~d~~i~~~~~-~~~~~~~~~~~~~~~v~~l~~s~~~~~~ 198 (337)
T d1gxra_ 134 KAELTSSAPACYALAISPDS--------------KVCFSCCSDGNIAVWDL-HNQTLVRQFQGHTDGASCIDISNDGTKL 198 (337)
T ss_dssp EEEEECSSSCEEEEEECTTS--------------SEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred cccccccccccccccccccc--------------ccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 67788999999999999988 68999999999999999 6677888899999999999999999999
Q ss_pred EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCe
Q psy307 452 ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNK 531 (1019)
Q Consensus 452 ~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~ 531 (1019)
++++.|+.|++||+++++.+..+.... .+.+++++|++++|++++.||.
T Consensus 199 ~~~~~d~~v~i~d~~~~~~~~~~~~~~-------------------------------~i~~l~~~~~~~~l~~~~~d~~ 247 (337)
T d1gxra_ 199 WTGGLDNTVRSWDLREGRQLQQHDFTS-------------------------------QIFSLGYCPTGEWLAVGMESSN 247 (337)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECSS-------------------------------CEEEEEECTTSSEEEEEETTSC
T ss_pred ccccccccccccccccceeeccccccc-------------------------------ceEEEEEcccccccceeccccc
Confidence 999999999999999998877665443 3455667788899999999999
Q ss_pred EEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCc
Q psy307 532 ILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPS 611 (1019)
Q Consensus 532 I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~ 611 (1019)
|++||+..... .....|. ..|.+++|+|+|++|++|+.||.|++||+.+++.+..+. |.+.|.+++|+|++ .
T Consensus 248 i~i~d~~~~~~----~~~~~~~--~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~-~ 319 (337)
T d1gxra_ 248 VEVLHVNKPDK----YQLHLHE--SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDD-K 319 (337)
T ss_dssp EEEEETTSSCE----EEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTS-C
T ss_pred ccccccccccc----ccccccc--cccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCC-C
Confidence 99999987632 3445555 679999999999999999999999999999999988765 77899999999998 6
Q ss_pred EEEEEeCCCcEEEE
Q psy307 612 KVVTAGWDAATAKV 625 (1019)
Q Consensus 612 ~l~s~s~Dg~I~iw 625 (1019)
+|++||.||+|++|
T Consensus 320 ~l~t~s~D~~I~vW 333 (337)
T d1gxra_ 320 YIVTGSGDKKATVY 333 (337)
T ss_dssp EEEEEETTSCEEEE
T ss_pred EEEEEeCCCeEEEE
Confidence 99999999999877
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.8e-32 Score=300.33 Aligned_cols=288 Identities=15% Similarity=0.198 Sum_probs=235.3
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc----EEEEEecccCccEeEEEEcCCCCceeEEEeec
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER----RCVRTYYGHRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~----~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
++++++ +|...|+|++|+|+ +.+|+||+ ||.|+|||+.... .......+|.+.|.+++|+|++
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~-g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg---------- 109 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG---------- 109 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS----------
T ss_pred eEEEEC-CCCCcEEEEEECCC-CCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCC----------
Confidence 556677 89999999999995 88999987 8999999985432 1233456899999999999998
Q ss_pred CCCCcEEEEEeCCCcEEEEEccC-CCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCce
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYK-EHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVA 480 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~-~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v 480 (1019)
++|++|+.||.|++||+.. .......+.+|...|.+++|+|++..+++++.|+.|++||+.++++......
T Consensus 110 ----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~---- 181 (337)
T d1gxra_ 110 ----CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG---- 181 (337)
T ss_dssp ----SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC----
T ss_pred ----CEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----
Confidence 6899999999999999854 3456778889999999999999999999999999999999998877655443
Q ss_pred EEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEE
Q psy307 481 YCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560 (1019)
Q Consensus 481 ~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~ 560 (1019)
+...+.++++++++..+++++.||.|++||++++.. +..+ .|. ..|.+
T Consensus 182 --------------------------~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~---~~~~-~~~--~~i~~ 229 (337)
T d1gxra_ 182 --------------------------HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ---LQQH-DFT--SQIFS 229 (337)
T ss_dssp --------------------------CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---EEEE-ECS--SCEEE
T ss_pred --------------------------ccccccccccccccccccccccccccccccccccee---eccc-ccc--cceEE
Confidence 234566788888999999999999999999987632 2333 233 67999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeecccc
Q psy307 561 LDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQ 640 (1019)
Q Consensus 561 v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~ 640 (1019)
++|+|++++|++|+.||.|++||+.+++.. ....|.+.|.+++|+|++ .+|++++.||.|++| +....
T Consensus 230 l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g-~~l~s~s~Dg~i~iw-d~~~~--------- 297 (337)
T d1gxra_ 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAW-RTPYG--------- 297 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEE-ETTTC---------
T ss_pred EEEcccccccceeccccccccccccccccc-cccccccccceEEECCCC-CEEEEEeCCCeEEEE-ECCCC---------
Confidence 999999999999999999999999988765 456789999999999998 699999999999776 22110
Q ss_pred CCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCc
Q psy307 641 VPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKN 720 (1019)
Q Consensus 641 v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~ 720 (1019)
+.. .. .-|.+.|++++|+|++ +.|++++.|++
T Consensus 298 -----------------------------~~~-~~----------------~~~~~~v~~~~~s~d~--~~l~t~s~D~~ 329 (337)
T d1gxra_ 298 -----------------------------ASI-FQ----------------SKESSSVLSCDISVDD--KYIVTGSGDKK 329 (337)
T ss_dssp -----------------------------CEE-EE----------------EECSSCEEEEEECTTS--CEEEEEETTSC
T ss_pred -----------------------------CEE-EE----------------ccCCCCEEEEEEeCCC--CEEEEEeCCCe
Confidence 000 00 0256789999999998 77999999999
Q ss_pred hhhHHH
Q psy307 721 ASLEEK 726 (1019)
Q Consensus 721 i~lw~~ 726 (1019)
|++|+.
T Consensus 330 I~vWdl 335 (337)
T d1gxra_ 330 ATVYEV 335 (337)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999973
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.2e-32 Score=310.36 Aligned_cols=332 Identities=16% Similarity=0.154 Sum_probs=236.6
Q ss_pred CCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC
Q psy307 335 TKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM 413 (1019)
Q Consensus 335 ~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~ 413 (1019)
.++|+|++|+|+ +.+||+|+.||.|+|||+..+. .++..+.+|.++|.+++|+|++ ++|++|+.
T Consensus 7 ~~pIt~~~~s~d-g~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~--------------~~l~s~s~ 71 (371)
T d1k8kc_ 7 VEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS--------------NRIVTCGT 71 (371)
T ss_dssp SSCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT--------------TEEEEEET
T ss_pred CCCeEEEEECCC-CCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCC--------------CEEEEEEC
Confidence 468999999996 8899999999999999985433 4677889999999999999998 69999999
Q ss_pred CCcEEEEEccCCC-eEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCee
Q psy307 414 DCRVKLWEVYKEH-RCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQ 492 (1019)
Q Consensus 414 Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~ 492 (1019)
|++|+|||+.... .....+.+|...|.+++|+|+++.|++++.|++|++|++..........
T Consensus 72 D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~----------------- 134 (371)
T d1k8kc_ 72 DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK----------------- 134 (371)
T ss_dssp TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE-----------------
T ss_pred CCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccc-----------------
Confidence 9999999995443 3455677899999999999999999999999999999987654322211
Q ss_pred eeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccc---------------cceeEEeccccccc
Q psy307 493 HLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKL---------------NRKKTFEGHMVAGY 557 (1019)
Q Consensus 493 ~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~---------------~~~~~l~gh~~~~~ 557 (1019)
.....+...|.+++|+|++++|++|+.|+.|++|+....... .......+|. +.
T Consensus 135 ---------~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 203 (371)
T d1k8kc_ 135 ---------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC--GW 203 (371)
T ss_dssp ---------EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS--SC
T ss_pred ---------ccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCcc--Cc
Confidence 112334567888999999999999999999999998643210 1122334444 77
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE-eccceeeeeee
Q psy307 558 ACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV-QDANIVKIAVE 636 (1019)
Q Consensus 558 V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw-wd~~i~ki~~e 636 (1019)
|.+++|+|+|++|++|+.||.|++||+.+++.+..+..|..+|.+++|+|++ .+|+ +|.|+.+++| |+....+....
T Consensus 204 v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~-~~la-~g~d~~~~~~~~~~~~~~~~~~ 281 (371)
T d1k8kc_ 204 VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITES-SLVA-AGHDCFPVLFTYDSAAGKLSFG 281 (371)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETT-EEEE-EETTSSCEEEEEETTTTEEEEC
T ss_pred EEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCC-CEEE-EEcCCceEEEEeeCCCceEEEe
Confidence 9999999999999999999999999999999999999999999999999987 4555 5567776554 44433332211
Q ss_pred ccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCcc--HHHHHh
Q psy307 637 MEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKT--ADDILS 714 (1019)
Q Consensus 637 ~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~--a~~Ilt 714 (1019)
.....+.... ....+.. .....+..... . .+ ..........+|.+.|++++++|... ...+++
T Consensus 282 ~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~--~-----~~---~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T 346 (371)
T d1k8kc_ 282 GRLDVPKQSS---QRGLTAR--ERFQNLDKKAS--S-----EG---SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCT 346 (371)
T ss_dssp CCCCCC-----------CHH--HHHHHCCCCC-------------------CCCSSSSSSCEEEEEEEESTTTSCSEEEE
T ss_pred eeecCccccc---cccccce--eeEecccceeE--E-----ec---cccccceecccccCCEEEEEEeCCCCcceEEEEE
Confidence 1100111000 0001100 00001110000 0 00 01111222346899999999988653 234779
Q ss_pred hcCCCchhhHHH
Q psy307 715 KLSDKNASLEEK 726 (1019)
Q Consensus 715 ~~~d~~i~lw~~ 726 (1019)
++.||.|++|+.
T Consensus 347 ~g~Dg~v~iW~~ 358 (371)
T d1k8kc_ 347 TGMDGGMSIWDV 358 (371)
T ss_dssp EETTSEEEEEEH
T ss_pred EcCCCeEEEEeC
Confidence 999999999985
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.2e-31 Score=300.04 Aligned_cols=299 Identities=17% Similarity=0.296 Sum_probs=231.3
Q ss_pred eCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec------
Q psy307 303 HPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY------ 376 (1019)
Q Consensus 303 ~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~------ 376 (1019)
....++.+.+|+...+.. +. ..++...+|++.|+||+|+|+ |.+|++|+ |++|+|||+. .++++..+.
T Consensus 33 ~~~~~~~~~~~~~~~~~~--~~-~~l~~~~~H~~~V~~l~fs~d-g~~lasg~-d~~i~iW~~~-~~~~~~~~~~~~~~~ 106 (388)
T d1erja_ 33 KKQTNDYYILYNPALPRE--ID-VELHKSLDHTSVVCCVKFSND-GEYLATGC-NKTTQVYRVS-DGSLVARLSDDSAAN 106 (388)
T ss_dssp EEECSSCEEEECTTSCCC--EE-EEEEEEEECSSCCCEEEECTT-SSEEEEEC-BSCEEEEETT-TCCEEEEECC-----
T ss_pred ccCCCCcEEEeCCCCCcc--ee-eeeEeeCCCCCcEEEEEECCC-CCEEEEEe-CCeEEEEEec-ccceEeeeccccccc
Confidence 444566777887543221 11 123334479999999999996 78999987 8999999994 444454444
Q ss_pred ------------ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEE
Q psy307 377 ------------GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICF 444 (1019)
Q Consensus 377 ------------gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~f 444 (1019)
+|...|++++|+|+| ++|++|+.||.|++||. ..++.+....+|...|.+++|
T Consensus 107 ~~~~~~~~~~~~~~~~~V~~l~~s~~~--------------~~l~s~~~dg~v~i~~~-~~~~~~~~~~~h~~~v~~~~~ 171 (388)
T d1erja_ 107 KDPENLNTSSSPSSDLYIRSVCFSPDG--------------KFLATGAEDRLIRIWDI-ENRKIVMILQGHEQDIYSLDY 171 (388)
T ss_dssp ------------CCCCBEEEEEECTTS--------------SEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEE
T ss_pred ccccccccccccCCCCCEEEEEECCCC--------------Ccceecccccccccccc-ccccccccccccccccccccc
Confidence 355567777777776 79999999999999999 677888889999999999999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCC-CeeeeccCCCcee------------------eeC
Q psy307 445 NNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDE-DKQHLDIPVDMKY------------------IAD 505 (1019)
Q Consensus 445 spdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~-~~~~~~~~~~~~~------------------i~~ 505 (1019)
++++..+++++.++.|++||.++..............++.+++.. ..++......... ...
T Consensus 172 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 251 (388)
T d1erja_ 172 FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGT 251 (388)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------C
T ss_pred ccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeecccccccc
Confidence 999999999999999999999999988888877777777777643 3332211111111 112
Q ss_pred CCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccc---------cceeEEeccccccceEEEEEcCCCCEEEEEeCC
Q psy307 506 PTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKL---------NRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD 576 (1019)
Q Consensus 506 ~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~---------~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D 576 (1019)
.+...|.+++|+|++++|++++.||.|++||+.+.... ........|. ..|.+++|+|+|++|++|+.|
T Consensus 252 ~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~sg~~d 329 (388)
T d1erja_ 252 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK--DFVLSVATTQNDEYILSGSKD 329 (388)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCS--SCEEEEEECGGGCEEEEEETT
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeeccccc--ceEEEEEECCCCCEEEEEeCC
Confidence 34567899999999999999999999999999764322 1223344554 679999999999999999999
Q ss_pred CeEEEEeCCCCceeeeeeccCCCEEEEEE------cCCCCcEEEEEeCCCcEEEE
Q psy307 577 GKCYIWDWKTTKLFKKWKAHDGVCISTLW------HPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 577 G~I~IWDl~t~~~l~~l~~h~~~V~sl~~------sp~~~~~l~s~s~Dg~I~iw 625 (1019)
|.|++||+.+++++.++++|.+.|.++++ +|++ .+|+|||.||+|++|
T Consensus 330 g~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~-~~l~s~s~Dg~I~iW 383 (388)
T d1erja_ 330 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY-NVFATGSGDCKARIW 383 (388)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTC-EEEEEEETTSEEEEE
T ss_pred CEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCC-CEEEEEeCCCEEEEE
Confidence 99999999999999999999999999975 5666 699999999999887
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.4e-31 Score=296.70 Aligned_cols=274 Identities=15% Similarity=0.204 Sum_probs=224.4
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcE-E
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERR-C 371 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~-~ 371 (1019)
+.+++|+.++.+ .+..+.+|+... ....+.+.+|.+.|++++|+|+ +++|++|+.||+|+|||+..... .
T Consensus 24 a~~~~g~~l~~~-~~~~v~i~~~~~-------~~~~~~~~~H~~~v~~~~~sp~-g~~latg~~dg~i~iwd~~~~~~~~ 94 (311)
T d1nr0a1 24 GNTPAGDKIQYC-NGTSVYTVPVGS-------LTDTEIYTEHSHQTTVAKTSPS-GYYCASGDVHGNVRIWDTTQTTHIL 94 (311)
T ss_dssp EECTTSSEEEEE-ETTEEEEEETTC-------SSCCEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEESSSTTCCE
T ss_pred EEcCCCCEEEEE-eCCEEEEEECCC-------CceeEEEcCCCCCEEEEEEeCC-CCeEeccccCceEeeeeeecccccc
Confidence 357788888887 466789998763 2456778999999999999996 89999999999999999966543 3
Q ss_pred EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC--CCcEEEEEccCCCeEEEEEccccccEeEEEEecCCC
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM--DCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT 449 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~--Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~ 449 (1019)
...+.+|..+|.+++|+|++ ++|++++. +..++||++ ..++....+.+|...|.+++|+|+++
T Consensus 95 ~~~~~~~~~~v~~v~~s~d~--------------~~l~~~~~~~~~~~~v~~~-~~~~~~~~l~~h~~~v~~v~~~~~~~ 159 (311)
T d1nr0a1 95 KTTIPVFSGPVKDISWDSES--------------KRIAAVGEGRERFGHVFLF-DTGTSNGNLTGQARAMNSVDFKPSRP 159 (311)
T ss_dssp EEEEECSSSCEEEEEECTTS--------------CEEEEEECCSSCSEEEEET-TTCCBCBCCCCCSSCEEEEEECSSSS
T ss_pred ccccccccCccccccccccc--------------ccccccccccccccccccc-ccccccccccccccccccccccccce
Confidence 35678999999999999998 57777775 466999999 55667778899999999999999998
Q ss_pred E-EEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec
Q psy307 450 N-FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM 528 (1019)
Q Consensus 450 ~-l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~ 528 (1019)
+ |++|+.|++|++||++++++...+.. +...|.++.++|++++|++++.
T Consensus 160 ~~l~sgs~d~~i~i~d~~~~~~~~~~~~------------------------------~~~~i~~v~~~p~~~~l~~~~~ 209 (311)
T d1nr0a1 160 FRIISGSDDNTVAIFEGPPFKFKSTFGE------------------------------HTKFVHSVRYNPDGSLFASTGG 209 (311)
T ss_dssp CEEEEEETTSCEEEEETTTBEEEEEECC------------------------------CSSCEEEEEECTTSSEEEEEET
T ss_pred eeeccccccccccccccccccccccccc------------------------------ccccccccccCccccccccccc
Confidence 5 88899999999999998887665543 2345677888899999999999
Q ss_pred CCeEEEEEccCccccccee----EEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCC---CEE
Q psy307 529 DNKILIFSALNRFKLNRKK----TFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDG---VCI 601 (1019)
Q Consensus 529 Dg~I~iwd~~~~~~~~~~~----~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~---~V~ 601 (1019)
||.|++||..++....... ...+|. +.|.+++|+|+|++|++|+.||+|+|||+.++++++++..|.. .+.
T Consensus 210 d~~v~~~d~~~~~~~~~~~~~~~~~~~h~--~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~ 287 (311)
T d1nr0a1 210 DGTIVLYNGVDGTKTGVFEDDSLKNVAHS--GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 287 (311)
T ss_dssp TSCEEEEETTTCCEEEECBCTTSSSCSSS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred ccccccccccccccccccccccccccccc--ccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEE
Confidence 9999999998764322111 123454 6799999999999999999999999999999999999987653 456
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 602 STLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 602 sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
++.|+++ .+++++.||.|++|
T Consensus 288 ~~~~~~~---~l~s~s~dG~i~~w 308 (311)
T d1nr0a1 288 GIIWTKQ---ALVSISANGFINFV 308 (311)
T ss_dssp EEEECSS---CEEEEETTCCEEEE
T ss_pred EEEecCC---EEEEEECCCEEEEE
Confidence 6777643 68999999999776
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=4.8e-30 Score=290.85 Aligned_cols=294 Identities=14% Similarity=0.166 Sum_probs=225.6
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-EE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-RC 371 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~~ 371 (1019)
+++++|+.+++++.|+.|++|+..... ..++.+++||.++|++|+|+|+ +.+|++|+.|++|+|||+.... ..
T Consensus 14 ~~s~dg~~la~~~~~~~i~iw~~~~~~-----~~~~~~l~gH~~~V~~l~fsp~-~~~l~s~s~D~~i~vWd~~~~~~~~ 87 (371)
T d1k8kc_ 14 AWNKDRTQIAICPNNHEVHIYEKSGNK-----WVQVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKP 87 (371)
T ss_dssp EECTTSSEEEEECSSSEEEEEEEETTE-----EEEEEEEECCSSCEEEEEEETT-TTEEEEEETTSCEEEEEEETTEEEE
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCC-----EEEEEEecCCCCCEEEEEECCC-CCEEEEEECCCeEEEEeeccccccc
Confidence 467899999999999999999875322 2467889999999999999995 7899999999999999995432 44
Q ss_pred EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe---EEEEEccccccEeEEEEecCC
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR---CVRTYYGHRQAVRDICFNNTG 448 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~---~~~~l~~H~~~V~sl~fspdg 448 (1019)
...+.+|...|.+++|+|++ +.|++|+.|++|++|++..... .......|...|.+++|+|++
T Consensus 88 ~~~~~~~~~~v~~i~~~p~~--------------~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 153 (371)
T d1k8kc_ 88 TLVILRINRAARCVRWAPNE--------------KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS 153 (371)
T ss_dssp EEECCCCSSCEEEEEECTTS--------------SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred cccccccccccccccccccc--------------ccceeecccCcceeeeeecccccccccccccccccccccccccccc
Confidence 55678899999999999998 6899999999999999865443 344567899999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccC-CCceeeeCCCCCcccEEEEcCCCCEEEEEe
Q psy307 449 TNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIP-VDMKYIADPTMHSMPAVTSSPNNKWLACQS 527 (1019)
Q Consensus 449 ~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~-~~~~~i~~~~~~~i~~v~~spdg~~Lasgs 527 (1019)
++|++|+.|++|++||............. +... ... .........+...+.+++|+|+|++|++++
T Consensus 154 ~~l~s~s~D~~v~v~~~~~~~~~~~~~~~---------~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~ 220 (371)
T d1k8kc_ 154 VLLAAGSCDFKCRIFSAYIKEVEERPAPT---------PWGS----KMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 220 (371)
T ss_dssp SEEEEEETTSCEEEEECCCTTTSCCCCCB---------TTBS----CCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred cceeccccCcEEEEEeeccCccccccccc---------cccc----cccceeeeeeccCccCcEEEEEeecccccccccc
Confidence 99999999999999998765422111100 0000 000 011223345667789999999999999999
Q ss_pred cCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCC--Cceee--------------
Q psy307 528 MDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKT--TKLFK-------------- 591 (1019)
Q Consensus 528 ~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t--~~~l~-------------- 591 (1019)
.|+.|++||+..+ ..+..+.+|. .+|.+++|+|||++|++|. |+.+++|.+.. +....
T Consensus 221 ~d~~i~iwd~~~~---~~~~~~~~~~--~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (371)
T d1k8kc_ 221 HDSTVCLADADKK---MAVATLASET--LPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 294 (371)
T ss_dssp TTTEEEEEEGGGT---TEEEEEECSS--CCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred cCCcceEEeeecc---cceeeeeccc--ccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCcccccccc
Confidence 9999999999876 3456777776 6799999999999888765 67666665432 11100
Q ss_pred -------------------------eeeccCCCEEEEEEcCCCC---cEEEEEeCCCcEEEE
Q psy307 592 -------------------------KWKAHDGVCISTLWHPHEP---SKVVTAGWDAATAKV 625 (1019)
Q Consensus 592 -------------------------~l~~h~~~V~sl~~sp~~~---~~l~s~s~Dg~I~iw 625 (1019)
....|.+.|+++++++.+. ..++|+|.||.|++|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW 356 (371)
T d1k8kc_ 295 LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356 (371)
T ss_dssp -CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEE
T ss_pred ccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEE
Confidence 0013888999999987542 368999999999876
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=1.1e-29 Score=281.34 Aligned_cols=242 Identities=19% Similarity=0.281 Sum_probs=200.9
Q ss_pred CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC
Q psy307 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM 413 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~ 413 (1019)
+.+.+.+++++|+ +..|+.++ ++.|.+||+ ........+.+|...|++++|+|+| ++|++|+.
T Consensus 16 ~r~~~~~~a~~~~-g~~l~~~~-~~~v~i~~~-~~~~~~~~~~~H~~~v~~~~~sp~g--------------~~latg~~ 78 (311)
T d1nr0a1 16 ARGTAVVLGNTPA-GDKIQYCN-GTSVYTVPV-GSLTDTEIYTEHSHQTTVAKTSPSG--------------YYCASGDV 78 (311)
T ss_dssp CTTCCCCCEECTT-SSEEEEEE-TTEEEEEET-TCSSCCEEECCCSSCEEEEEECTTS--------------SEEEEEET
T ss_pred CCCCeEEEEEcCC-CCEEEEEe-CCEEEEEEC-CCCceeEEEcCCCCCEEEEEEeCCC--------------CeEecccc
Confidence 4445677899996 66777764 667999999 4556677889999999999999999 79999999
Q ss_pred CCcEEEEEccCCCe-EEEEEccccccEeEEEEecCCCEEEEEEc--CCeEEEEECCCCceEEEEecCCceEEEEEecCCC
Q psy307 414 DCRVKLWEVYKEHR-CVRTYYGHRQAVRDICFNNTGTNFISAGY--DRYLKLWDTESGECISRFTSRKVAYCVKFHPDED 490 (1019)
Q Consensus 414 Dg~I~IWDl~~~~~-~~~~l~~H~~~V~sl~fspdg~~l~S~s~--Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~ 490 (1019)
||+|+|||+..... ....+.+|.+.|.+++|+|++++|++++. ++.++||++++++....+..
T Consensus 79 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~-------------- 144 (311)
T d1nr0a1 79 HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG-------------- 144 (311)
T ss_dssp TSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCC--------------
T ss_pred CceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccccccccc--------------
Confidence 99999999976554 34567899999999999999999999986 45699999998876544432
Q ss_pred eeeeccCCCceeeeCCCCCcccEEEEcCCCCE-EEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCE
Q psy307 491 KQHLDIPVDMKYIADPTMHSMPAVTSSPNNKW-LACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSY 569 (1019)
Q Consensus 491 ~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~-Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~ 569 (1019)
+...|.+++|+|++++ |++|+.||.|++||+++. .....+.+|. ..|+++.|+|++++
T Consensus 145 ----------------h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~---~~~~~~~~~~--~~i~~v~~~p~~~~ 203 (311)
T d1nr0a1 145 ----------------QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF---KFKSTFGEHT--KFVHSVRYNPDGSL 203 (311)
T ss_dssp ----------------CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB---EEEEEECCCS--SCEEEEEECTTSSE
T ss_pred ----------------cccccccccccccceeeeccccccccccccccccc---cccccccccc--ccccccccCccccc
Confidence 3345677788888875 788999999999999876 4456677776 77999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCceeeeee-------ccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccc
Q psy307 570 LISGDADGKCYIWDWKTTKLFKKWK-------AHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDAN 629 (1019)
Q Consensus 570 Lasgs~DG~I~IWDl~t~~~l~~l~-------~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~ 629 (1019)
+++|+.||.|++||+.++..+..+. +|.+.|.+++|+|++ .+|++|+.||+|++| +.+
T Consensus 204 l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~-~~l~tgs~Dg~v~iw-d~~ 268 (311)
T d1nr0a1 204 FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIW-NVA 268 (311)
T ss_dssp EEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEE-ETT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccCCCC-CEEEEEeCCCeEEEE-ECC
Confidence 9999999999999999988776653 588899999999998 699999999999765 443
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.1e-29 Score=276.06 Aligned_cols=338 Identities=16% Similarity=0.235 Sum_probs=236.1
Q ss_pred eeeeccCCCCe-EEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCc
Q psy307 328 VHTWEGHTKGI-SAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAH 406 (1019)
Q Consensus 328 i~~l~gH~~~V-~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~ 406 (1019)
..+|+||.+.| +|++|+ +++|+||+.||+|+|||+ ..++++.++.+|.++|.+++|++++
T Consensus 5 ~~tL~GH~~~vitc~~~~---~~~l~tgs~Dg~i~vWd~-~~~~~~~~l~~H~~~V~~l~~s~~~--------------- 65 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDS-INKKFLLQLSGHDGGVWALKYAHGG--------------- 65 (355)
T ss_dssp EEEEECCSSSCEEEEEEE---TTEEEEEETTTEEEEEET-TTTEEEEEEECCSSCEEEEEEETTT---------------
T ss_pred cEEECCcCCCcEEEEEEC---CCEEEEEeCCCeEEEEEC-CCCcEEEEEECCCCCEEEEEEcCCC---------------
Confidence 56899999886 666653 579999999999999999 5678899999999999999998864
Q ss_pred EEEEEeCCCcEEEEEccCCCeEEEEEcc--ccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEE
Q psy307 407 LLLSCSMDCRVKLWEVYKEHRCVRTYYG--HRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVK 484 (1019)
Q Consensus 407 ~L~sgs~Dg~I~IWDl~~~~~~~~~l~~--H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~ 484 (1019)
+|++|+.||+|++|++. .......... +...+..+.+++++..+++++.|++|++||+.++................
T Consensus 66 ~l~s~s~D~~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 144 (355)
T d1nexb2 66 ILVSGSTDRTVRVWDIK-KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF 144 (355)
T ss_dssp EEEEEETTCCEEEEETT-TTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEE
T ss_pred EEEEEeccccccccccc-ccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccce
Confidence 79999999999999994 4444444433 33445666788899999999999999999999887655444322222222
Q ss_pred EecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEc
Q psy307 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564 (1019)
Q Consensus 485 ~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fs 564 (1019)
..+... .........+........++++++++++.|+.|++||+.+. .......++. ..+.++.|+
T Consensus 145 ~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~---~~~~~~~~~~--~~~~~~~~~ 210 (355)
T d1nexb2 145 HTPEEN---------PYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM---KCLYILSGHT--DRIYSTIYD 210 (355)
T ss_dssp SCTTTC---------TTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTT---EEEEEECCCS--SCEEEEEEE
T ss_pred eccccc---------cceeeeeeeccccccccccccceeeeecccceeeeeecccc---cceeeeeccc--ccccccccc
Confidence 222111 11111112223334566778999999999999999999876 3345566665 568899999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCce
Q psy307 565 PDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQL 644 (1019)
Q Consensus 565 pdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql 644 (1019)
|++.++++++.||.|++||+.++..+..+.+|...|.+++|++ .++++++.||+|++|.-.+..+...........+
T Consensus 211 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 287 (355)
T d1nexb2 211 HERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAI 287 (355)
T ss_dssp TTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTTCCEEEEEECTTCCCC
T ss_pred ccceeeecccccceEEeeecccccccccccccccccccccccc---ceeeeeecccccccccccccceecccccCCceEE
Confidence 9999999999999999999999999999999999999999975 4899999999997764333222221111111110
Q ss_pred eecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccc------cCCceEEEEecCCccHHHHHhhcCC
Q psy307 645 YQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEI------KNGSVLRLAFSASKTADDILSKLSD 718 (1019)
Q Consensus 645 ~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I------~ng~Vl~LafSPd~~a~~Ilt~~~d 718 (1019)
-.++.+..++...++ +...+|..+.+..+ |.++|++++|+|+. .|++++.|
T Consensus 288 -------------------~~~~~~~~~l~~g~d-~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~---~~~~~s~d 344 (355)
T d1nexb2 288 -------------------TTFYVSDNILVSGSE-NQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT---LVAAVEKD 344 (355)
T ss_dssp -------------------CEEEECSSEEEEEET-TEEEEEETTTCCBCCSCTTTTCSEEEEEEEETTE---EEEEEESS
T ss_pred -------------------EEEcCCCCEEEEEeC-CEEEEEECCCCCEEEEEecCCCCCEEEEEEcCCe---EEEEEECC
Confidence 011222233333332 34455555544433 57899999999974 57788889
Q ss_pred CchhhHH
Q psy307 719 KNASLEE 725 (1019)
Q Consensus 719 ~~i~lw~ 725 (1019)
|++.||.
T Consensus 345 g~~~l~~ 351 (355)
T d1nexb2 345 GQSFLEI 351 (355)
T ss_dssp SCEEEEE
T ss_pred CcEEEEE
Confidence 9987763
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=7.5e-29 Score=270.47 Aligned_cols=275 Identities=17% Similarity=0.234 Sum_probs=213.3
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEe-cccCccEeEEEEcCCCCceeEEEeecCCC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTY-YGHRQAVRDICFNNTGTNFISAIRWFPKS 404 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~-~gh~~~V~~i~fspdg~~~vs~i~~~p~~ 404 (1019)
+..+++.||.++|++|+|+|+ +.+|+||+.||+|++||+. ++++++.+ .+|...|.+++|+|++
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~d-g~~l~s~s~Dg~v~vWd~~-~~~~~~~~~~~h~~~v~~v~~~~~g------------- 67 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSAD-GKTLFSADAEGHINSWDIS-TGISNRVFPDVHATMITGIKTTSKG------------- 67 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETT-TCCEEECSSCSCSSCEEEEEECTTS-------------
T ss_pred ccceEcCCCCCCcEEEEECCC-CCEEEEEcCCCeEEEEECC-CCcEEEEEcCCCCCcEEEEEeeccc-------------
Confidence 567899999999999999996 8899999999999999994 45666666 4799999999999988
Q ss_pred CcEEEEEeCCCcEEEEEccCCCe--EEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEE
Q psy307 405 AHLLLSCSMDCRVKLWEVYKEHR--CVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYC 482 (1019)
Q Consensus 405 ~~~L~sgs~Dg~I~IWDl~~~~~--~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~ 482 (1019)
.+++++.|+.+++|+...... .......|...+.+++|+++++.++++ .++.+++|+... .........+.+
T Consensus 68 --~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~~---~~~~~~~~~~~~ 141 (299)
T d1nr0a2 68 --DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHGK---LTEVPISYNSSC 141 (299)
T ss_dssp --CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETTE---EEEEECSSCEEE
T ss_pred --eeecccceeeEEEeccCCcccccccccccccccccccccccccccccccc-cccccccccccc---cccccccccccc
Confidence 367788899999999854321 222345577889999999999866655 567899998542 333445566788
Q ss_pred EEEecCCCeeeeccCCC------------ceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEe
Q psy307 483 VKFHPDEDKQHLDIPVD------------MKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFE 550 (1019)
Q Consensus 483 v~~~p~~~~~~~~~~~~------------~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~ 550 (1019)
++|+|++...+...... .......+...|.+++++|++++|++++.|+.|++||+.++........+.
T Consensus 142 ~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~ 221 (299)
T d1nr0a2 142 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWT 221 (299)
T ss_dssp EEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999887665422111 111223456779999999999999999999999999998876655566677
Q ss_pred ccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee--eecc-CCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 551 GHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKK--WKAH-DGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 551 gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~--l~~h-~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+|. ..|.+++|+|+|++|++|+.||.|+|||+.++..... ...| ...|.++.|.+ + .+|+|+|.||+|++|
T Consensus 222 ~h~--~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~l~s~s~D~~i~iW 295 (299)
T d1nr0a2 222 FHT--AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-E-TTIVSAGQDSNIKFW 295 (299)
T ss_dssp CCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE-T-TEEEEEETTSCEEEE
T ss_pred ccc--cccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECC-C-CEEEEEeCCCEEEEE
Confidence 776 6799999999999999999999999999988754332 2333 45677776655 4 489999999999776
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=2.2e-27 Score=261.36 Aligned_cols=278 Identities=14% Similarity=0.154 Sum_probs=217.9
Q ss_pred EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCC
Q psy307 370 RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT 449 (1019)
Q Consensus 370 ~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~ 449 (1019)
+..+++.||.++|++++|+|++ .+|++|+.||+|+|||+ ..+..+..+..|...|.+++|+|++.
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~--------------~~l~sgs~Dg~v~iWd~-~~~~~~~~~~~~~~~v~~v~~~~~~~ 110 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDS--------------RLLVSASQDGKLIIWDS-YTTNKVHAIPLRSSWVMTCAYAPSGN 110 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTS--------------SEEEEEETTTEEEEEET-TTTEEEEEEECSCSCEEEEEECTTSS
T ss_pred eeeEEECCCCCCEEEEEECCCC--------------CEEEEEECCCceeeeec-ccceeEEEEecccccEEeeEeeccce
Confidence 4567899999999999999998 69999999999999999 67788899999999999999999999
Q ss_pred EEEEEEcCCeEEEEECCCCc----eEEEEecCCceEEEEEecCCCeeee-----------ccCCCceeeeCCCCCcccEE
Q psy307 450 NFISAGYDRYLKLWDTESGE----CISRFTSRKVAYCVKFHPDEDKQHL-----------DIPVDMKYIADPTMHSMPAV 514 (1019)
Q Consensus 450 ~l~S~s~Dg~I~lWDl~t~~----~i~~~~~~~~v~~v~~~p~~~~~~~-----------~~~~~~~~i~~~~~~~i~~v 514 (1019)
++++|+.|+.+++|+..... ....+..+................. ................+...
T Consensus 111 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (340)
T d1tbga_ 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL 190 (340)
T ss_dssp EEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred eeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeee
Confidence 99999999999999976543 3444444433322222222111111 11112223334455667888
Q ss_pred EEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee
Q psy307 515 TSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK 594 (1019)
Q Consensus 515 ~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~ 594 (1019)
.+.+.+.++++|+.|+.|++||+.++ .....+.+|. +.|.+++|+|+|++|++|+.||.|++||+.....+..+.
T Consensus 191 ~~~~~~~~~~~~~~d~~v~i~d~~~~---~~~~~~~~h~--~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~ 265 (340)
T d1tbga_ 191 SLAPDTRLFVSGACDASAKLWDVREG---MCRQTFTGHE--SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265 (340)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTT---EEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ccccccceeEEeecCceEEEEECCCC---cEEEEEeCCC--CCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccc
Confidence 89999999999999999999999877 4457788887 779999999999999999999999999999988877653
Q ss_pred --ccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCcee
Q psy307 595 --AHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQY 672 (1019)
Q Consensus 595 --~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~ 672 (1019)
.|...|.+++|+|++ .+|++|+.||.|++| +....+ .
T Consensus 266 ~~~~~~~i~~~~~s~~~-~~l~~g~~dg~i~iw-d~~~~~---------------------------------------~ 304 (340)
T d1tbga_ 266 HDNIICGITSVSFSKSG-RLLLAGYDDFNCNVW-DALKAD---------------------------------------R 304 (340)
T ss_dssp CTTCCSCEEEEEECSSS-CEEEEEETTSCEEEE-ETTTCC---------------------------------------E
T ss_pred cccccCceEEEEECCCC-CEEEEEECCCEEEEE-ECCCCc---------------------------------------E
Confidence 566789999999998 699999999999776 221100 0
Q ss_pred EEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCchhhHH
Q psy307 673 ALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNASLEE 725 (1019)
Q Consensus 673 al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~ 725 (1019)
...+. -|.++|.+++|+|++ +.|++++.||+|+||+
T Consensus 305 ~~~~~---------------~H~~~V~~l~~s~d~--~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 305 AGVLA---------------GHDNRVSCLGVTDDG--MAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEC---------------CCSSCEEEEEECTTS--SCEEEEETTSCEEEEC
T ss_pred EEEEc---------------CCCCCEEEEEEeCCC--CEEEEEccCCEEEEeC
Confidence 11111 367889999999998 7899999999999995
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.8e-27 Score=264.51 Aligned_cols=279 Identities=15% Similarity=0.171 Sum_probs=211.3
Q ss_pred CCCCCCCeeeeCCCCC-ceeeecCCCCCCccCCccceeeeccCC-CCeEEEEEcCC-CCcEEEEeeCCCeEEEEecCCCc
Q psy307 293 PTDYQGRSFLHPPHDV-GTNLRSDTPPDRCFLPKTQVHTWEGHT-KGISAIRWFPK-SAHLLLSCSMDCRVKLWEVYKER 369 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~-~v~lw~~~~~~~~~lp~~~i~~l~gH~-~~V~~i~fspd-~g~lLaSgs~Dg~I~IWdl~~~~ 369 (1019)
.+++.|..++.+..+. .++.|+.... ....+..+.||. ..|++++|+|. ++.+|++|+.||+|+|||+....
T Consensus 24 ~~~~~~~~la~~~~~~~~i~~~~~~~~-----~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 24 SYDPTTNAIAYPCGKSAFVRCLDDGDS-----KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp EEETTTTEEEEEETTEEEEEECCSSCC-----SSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred EECCCCCEEEEEeCCCEEEEEEeCCCC-----CccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence 3577888888775433 3445543321 234567788885 67999999984 57899999999999999984321
Q ss_pred -------EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe--CCCcEEEEEccCCCeEEEEEccccccEe
Q psy307 370 -------RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS--MDCRVKLWEVYKEHRCVRTYYGHRQAVR 440 (1019)
Q Consensus 370 -------~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs--~Dg~I~IWDl~~~~~~~~~l~~H~~~V~ 440 (1019)
.....+..|.++|.+++|++++ .+|++++ .++.+++|+. ..+.++..+.+|...|.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~--------------~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~ 163 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAGPISDISWDFEG--------------RRLCVVGEGRDNFGVFISW-DSGNSLGEVSGHSQRIN 163 (325)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTS--------------SEEEEEECCSSCSEEEEET-TTCCEEEECCSCSSCEE
T ss_pred ceeeeecccccccccccCcEEEEEECCCC--------------CccceeeccccceEEEEee-cccccceeeeecccccc
Confidence 2223456788999999999998 4555554 4778999999 56778889999999999
Q ss_pred EEEEecCCCE-EEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC
Q psy307 441 DICFNNTGTN-FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN 519 (1019)
Q Consensus 441 sl~fspdg~~-l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd 519 (1019)
+++|+|++.. +++++.|+.|++||..+++....+... ..+...|.+++|+|+
T Consensus 164 ~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~---------------------------~~~~~~v~~v~~~pd 216 (325)
T d1pgua1 164 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH---------------------------HKQGSFVRDVEFSPD 216 (325)
T ss_dssp EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSS---------------------------SCTTCCEEEEEECST
T ss_pred cccccccccceEEEeecccccccccccccccceecccc---------------------------cCCCCccEEeeeccc
Confidence 9999999875 778999999999999887765544321 123445677888886
Q ss_pred -CCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEc---CCCCEEEEEeCCCeEEEEeCCCCceeeeeec
Q psy307 520 -NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS---PDMSYLISGDADGKCYIWDWKTTKLFKKWKA 595 (1019)
Q Consensus 520 -g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fs---pdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~ 595 (1019)
+.+|++++.||.|++||++++ ..+..+.+|. ..+.++.|+ |||++|++|+.||.|+|||+.+++++..+..
T Consensus 217 ~~~~l~s~~~d~~i~iwd~~~~---~~~~~l~~~~--~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~ 291 (325)
T d1pgua1 217 SGEFVITVGSDRKISCFDGKSG---EFLKYIEDDQ--EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL 291 (325)
T ss_dssp TCCEEEEEETTCCEEEEETTTC---CEEEECCBTT--BCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred cceeccccccccceeeeeeccc---cccccccccc--cccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEe
Confidence 688999999999999999877 3456777776 334333343 6899999999999999999999999998876
Q ss_pred cCCC--E--EEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 596 HDGV--C--ISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 596 h~~~--V--~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
|... + .++.|.++ ..|+++|.||+|++|
T Consensus 292 ~~~~~~~~~~~~~~~~~--~~l~s~s~dg~i~vw 323 (325)
T d1pgua1 292 DKQQLGNQQVGVVATGN--GRIISLSLDGTLNFY 323 (325)
T ss_dssp CTTCGGGCEEEEEEEET--TEEEEEETTSCEEEE
T ss_pred cCCcccCeEEEEEECCC--CEEEEEECCCEEEEE
Confidence 6543 3 34455544 479999999999877
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=3.3e-27 Score=266.66 Aligned_cols=267 Identities=18% Similarity=0.325 Sum_probs=200.4
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCcc-----------CCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCF-----------LPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVK 361 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~-----------lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~ 361 (1019)
.++++|+++++|+ |+.|++|+........ ..........+|...|++++|+|+ +.+|++|+.||.|+
T Consensus 69 ~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-~~~l~s~~~dg~v~ 146 (388)
T d1erja_ 69 KFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD-GKFLATGAEDRLIR 146 (388)
T ss_dssp EECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT-SSEEEEEETTSCEE
T ss_pred EECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC-CCcceecccccccc
Confidence 3678999999986 8999999875322100 001122334578889999999995 89999999999999
Q ss_pred EEecCCCcEEEEEecccCccEeEEEEcCCCCceeEE----------------------------EeecCCCCcEEEEEeC
Q psy307 362 LWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISA----------------------------IRWFPKSAHLLLSCSM 413 (1019)
Q Consensus 362 IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~----------------------------i~~~p~~~~~L~sgs~ 413 (1019)
+||. ..++.+..+.+|...|.++.+++++..++.+ +.+++.++.+|++|+.
T Consensus 147 i~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 225 (388)
T d1erja_ 147 IWDI-ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL 225 (388)
T ss_dssp EEET-TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEET
T ss_pred cccc-cccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcC
Confidence 9999 5667788899999999999999998766543 4467888899999999
Q ss_pred CCcEEEEEccCCCeEE------EEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEec
Q psy307 414 DCRVKLWEVYKEHRCV------RTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHP 487 (1019)
Q Consensus 414 Dg~I~IWDl~~~~~~~------~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p 487 (1019)
||.|++||+....... ....+|.+.|.+++|+|++++|++++.||.|++||+.++.............
T Consensus 226 d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~------ 299 (388)
T d1erja_ 226 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT------ 299 (388)
T ss_dssp TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------C------
T ss_pred CCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccc------
Confidence 9999999995443322 2235789999999999999999999999999999998876554433221111
Q ss_pred CCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEE-----
Q psy307 488 DEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD----- 562 (1019)
Q Consensus 488 ~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~----- 562 (1019)
.......+...+.+++|+|++++|++|+.||.|++||+.++ ..+..+.+|. +.|.+++
T Consensus 300 ------------~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~---~~~~~l~~H~--~~V~~~~~~~~~ 362 (388)
T d1erja_ 300 ------------CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHR--NSVISVAVANGS 362 (388)
T ss_dssp ------------EEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCS--SCEEEEEECSSC
T ss_pred ------------eeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC---cEEEEEeCCC--CCEEEEEEecCc
Confidence 11222345567889999999999999999999999999887 4567888987 6688886
Q ss_pred -EcCCCCEEEEEeCCCeEEEEeCC
Q psy307 563 -FSPDMSYLISGDADGKCYIWDWK 585 (1019)
Q Consensus 563 -fspdg~~Lasgs~DG~I~IWDl~ 585 (1019)
|+|++.+|++|+.||+|+|||++
T Consensus 363 ~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 363 SLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp TTCTTCEEEEEEETTSEEEEEEEE
T ss_pred ccCCCCCEEEEEeCCCEEEEEeee
Confidence 56799999999999999999974
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=2e-27 Score=258.99 Aligned_cols=236 Identities=16% Similarity=0.235 Sum_probs=187.3
Q ss_pred cEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEE-ccccccEeEEEEecC
Q psy307 369 RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY-YGHRQAVRDICFNNT 447 (1019)
Q Consensus 369 ~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l-~~H~~~V~sl~fspd 447 (1019)
+...+++.||..+|++++|+|++ ++|++|+.||+|++||+. .+++...+ .+|...|++++|+|+
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg--------------~~l~s~s~Dg~v~vWd~~-~~~~~~~~~~~h~~~v~~v~~~~~ 66 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADG--------------KTLFSADAEGHINSWDIS-TGISNRVFPDVHATMITGIKTTSK 66 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTS--------------SEEEEEETTSCEEEEETT-TCCEEECSSCSCSSCEEEEEECTT
T ss_pred CccceEcCCCCCCcEEEEECCCC--------------CEEEEEcCCCeEEEEECC-CCcEEEEEcCCCCCcEEEEEeecc
Confidence 45678899999999999999999 699999999999999994 45555665 579999999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCce----EEEEecCCceEEEEEecCCCeeeeccCCCc------eeeeCCCCCcccEEEEc
Q psy307 448 GTNFISAGYDRYLKLWDTESGEC----ISRFTSRKVAYCVKFHPDEDKQHLDIPVDM------KYIADPTMHSMPAVTSS 517 (1019)
Q Consensus 448 g~~l~S~s~Dg~I~lWDl~t~~~----i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~------~~i~~~~~~~i~~v~~s 517 (1019)
++ +++++.|+.+++|+...... .........+.++.++|++........... +.........+.+++++
T Consensus 67 g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s 145 (299)
T d1nr0a2 67 GD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALS 145 (299)
T ss_dssp SC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEEC
T ss_pred ce-eecccceeeEEEeccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 86 66788999999999865432 112234456788999999876554332211 11222344567889999
Q ss_pred CCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee---eeee
Q psy307 518 PNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLF---KKWK 594 (1019)
Q Consensus 518 pdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l---~~l~ 594 (1019)
|++++|++|+.||.|++||+.+.... . .....|. ..|.+++|+|++++|++|+.||.|++||+.++..+ ..+.
T Consensus 146 ~~~~~l~~g~~dg~i~~~d~~~~~~~-~-~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~ 221 (299)
T d1nr0a2 146 NDKQFVAVGGQDSKVHVYKLSGASVS-E-VKTIVHP--AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWT 221 (299)
T ss_dssp TTSCEEEEEETTSEEEEEEEETTEEE-E-EEEEECS--SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCC
T ss_pred cccccccccccccccccccccccccc-c-ccccccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999865321 1 2233454 67999999999999999999999999999887654 4556
Q ss_pred ccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 595 AHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 595 ~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+|...|.+++|+|++ .+|++|+.||.|++|
T Consensus 222 ~h~~~v~~l~~s~~~-~~l~sgs~dg~i~iw 251 (299)
T d1nr0a2 222 FHTAKVACVSWSPDN-VRLATGSLDNSVIVW 251 (299)
T ss_dssp CCSSCEEEEEECTTS-SEEEEEETTSCEEEE
T ss_pred ccccccccccccccc-cceEEEcCCCEEEEE
Confidence 799999999999998 699999999999776
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=8.4e-27 Score=257.28 Aligned_cols=278 Identities=19% Similarity=0.341 Sum_probs=213.2
Q ss_pred CCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEE
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRT 374 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~ 374 (1019)
+++|+++++++.|+.|++|+.. ..++++++++|.++|++++|+|+ .+|++|+.||+|++|++... .+...
T Consensus 20 ~~~~~~l~tgs~Dg~i~vWd~~-------~~~~~~~l~~H~~~V~~l~~s~~--~~l~s~s~D~~i~iw~~~~~-~~~~~ 89 (355)
T d1nexb2 20 QFEDNYVITGADDKMIRVYDSI-------NKKFLLQLSGHDGGVWALKYAHG--GILVSGSTDRTVRVWDIKKG-CCTHV 89 (355)
T ss_dssp EEETTEEEEEETTTEEEEEETT-------TTEEEEEEECCSSCEEEEEEETT--TEEEEEETTCCEEEEETTTT-EEEEE
T ss_pred EECCCEEEEEeCCCeEEEEECC-------CCcEEEEEECCCCCEEEEEEcCC--CEEEEEeccccccccccccc-ccccc
Confidence 4568999999999999999875 34678999999999999999984 58999999999999999543 43433
Q ss_pred eccc--CccEeEEEEcCCCCceeEEE------ee-------------------------------------------cCC
Q psy307 375 YYGH--RQAVRDICFNNTGTNFISAI------RW-------------------------------------------FPK 403 (1019)
Q Consensus 375 ~~gh--~~~V~~i~fspdg~~~vs~i------~~-------------------------------------------~p~ 403 (1019)
...+ ...+..+.+.+++..++.+. .| ...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (355)
T d1nexb2 90 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG 169 (355)
T ss_dssp ECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEE
T ss_pred cccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccccccc
Confidence 3322 22333444455544333220 01 112
Q ss_pred CCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEE
Q psy307 404 SAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCV 483 (1019)
Q Consensus 404 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v 483 (1019)
++.++++++.|+.|++||+ ...+.+....++...+.++.|++++..+++++.|++|++||++++.++..+..+
T Consensus 170 ~~~~~~~~~~d~~i~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h------ 242 (355)
T d1nexb2 170 HGNIVVSGSYDNTLIVWDV-AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH------ 242 (355)
T ss_dssp ETTEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCC------
T ss_pred ccceeeeecccceeeeeec-ccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccc------
Confidence 3467889999999999998 567778888899999999999999999999999999999999999887766543
Q ss_pred EEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEE-EE
Q psy307 484 KFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACS-LD 562 (1019)
Q Consensus 484 ~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~-v~ 562 (1019)
...+.+++++ +++|++++.||.|++||+.+.. ..+..|. ..+.+ ..
T Consensus 243 ------------------------~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~--~~~~~~~~ 289 (355)
T d1nexb2 243 ------------------------TALVGLLRLS--DKFLVSAAADGSIRGWDANDYS-----RKFSYHH--TNLSAITT 289 (355)
T ss_dssp ------------------------SSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC-----EEEEEEC--TTCCCCCE
T ss_pred ------------------------cccccccccc--cceeeeeecccccccccccccc-----eeccccc--CCceEEEE
Confidence 2345566664 4689999999999999998652 3344444 22333 45
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceee-eeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 563 FSPDMSYLISGDADGKCYIWDWKTTKLFK-KWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 563 fspdg~~Lasgs~DG~I~IWDl~t~~~l~-~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+++++.+|++| .||.|+|||+++++++. .+.+|.+.|.+++|+|+ .++++++.||++++|
T Consensus 290 ~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~--~~~~~~s~dg~~~l~ 350 (355)
T d1nexb2 290 FYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK--TLVAAVEKDGQSFLE 350 (355)
T ss_dssp EEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT--EEEEEEESSSCEEEE
T ss_pred EcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC--eEEEEEECCCcEEEE
Confidence 67788877776 58999999999999886 46789999999999986 478899999998665
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=9.8e-27 Score=251.99 Aligned_cols=284 Identities=21% Similarity=0.321 Sum_probs=223.4
Q ss_pred EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEE
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNF 451 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l 451 (1019)
..++.||.++|++++|+|++ .+|+||+.||+|+|||+ ..++++..+.+|...|.+++|+|++..+
T Consensus 10 ~~~L~GH~~~I~~l~~sp~~--------------~~l~s~s~Dg~i~iWd~-~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 74 (317)
T d1vyhc1 10 KYALSGHRSPVTRVIFHPVF--------------SVMVSASEDATIKVWDY-ETGDFERTLKGHTDSVQDISFDHSGKLL 74 (317)
T ss_dssp SCEEECCSSCEEEEEECSSS--------------SEEEEEESSSCEEEEET-TTCCCCEEECCCSSCEEEEEECTTSSEE
T ss_pred cEEEcCCCCCeEEEEEcCCC--------------CEEEEEeCCCeEEEEEC-CCCCEEEEEeCCCCcEEEEeeecccccc
Confidence 45789999999999999998 69999999999999999 5677888999999999999999999999
Q ss_pred EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCe
Q psy307 452 ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNK 531 (1019)
Q Consensus 452 ~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~ 531 (1019)
++++.++.+.+|+.........+.. +...+.++.++|++..+++++.|+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~d~~ 124 (317)
T d1vyhc1 75 ASCSADMTIKLWDFQGFECIRTMHG------------------------------HDHNVSSVSIMPNGDHIVSASRDKT 124 (317)
T ss_dssp EEEETTSCCCEEETTSSCEEECCCC------------------------------CSSCEEEEEECSSSSEEEEEETTSE
T ss_pred ccccccccccccccccccccccccc------------------------------ccccceeeeccCCCceEEeeccCcc
Confidence 9999999999999887665443322 3345667788899999999999999
Q ss_pred EEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCC-
Q psy307 532 ILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEP- 610 (1019)
Q Consensus 532 I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~- 610 (1019)
+++||+.++ .....+.+|. ..+.+++|+|++.+|++|+.||.|++|++.+++.+..+.+|...+.++.|+|++.
T Consensus 125 ~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 199 (317)
T d1vyhc1 125 IKMWEVQTG---YCVKTFTGHR--EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSY 199 (317)
T ss_dssp EEEEETTTC---CEEEEEECCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGG
T ss_pred eeEeecccc---eeeeEEccCC--CcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeecccc
Confidence 999999887 3456777876 6789999999999999999999999999999999999999999999999998642
Q ss_pred ------------------cEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCcee
Q psy307 611 ------------------SKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQY 672 (1019)
Q Consensus 611 ------------------~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~ 672 (1019)
..+++++.||.|++| +....+......++...+.. ..+.+...+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~-~~~~~~~~~~~~~~~~~v~~-----------------~~~~~~~~~ 261 (317)
T d1vyhc1 200 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMW-DVSTGMCLMTLVGHDNWVRG-----------------VLFHSGGKF 261 (317)
T ss_dssp GGGGGCCSCC-------CCEEEEEETTSEEEEE-ETTTTEEEEEEECCSSCEEE-----------------EEECSSSSC
T ss_pred ceeeccccceeeeeccCCceeEeccCCCEEEEE-ECCCCcEEEEEeCCCCCEEE-----------------EEECCCCCE
Confidence 368999999999765 44444443333333222111 111112223
Q ss_pred EEEeecCCCceEEeccccccc-----cCCceEEEEecCCccHHHHHhhcCCCchhhHH
Q psy307 673 ALQFSETNNKNYITEKNRNEI-----KNGSVLRLAFSASKTADDILSKLSDKNASLEE 725 (1019)
Q Consensus 673 al~~sd~~~~~~it~~~~~~I-----~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~ 725 (1019)
++..+.++...++...+...+ |.++|++++|+|++ +.|++++.||+|++|+
T Consensus 262 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~--~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 262 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSS--SCEEEEETTSEEEEEC
T ss_pred EEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCCeEEEeC
Confidence 333333333444444444333 68899999999998 7899999999999995
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.7e-26 Score=253.41 Aligned_cols=323 Identities=20% Similarity=0.320 Sum_probs=228.9
Q ss_pred ccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCC
Q psy307 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKS 404 (1019)
Q Consensus 325 ~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~ 404 (1019)
.++.++|+||++.|.+ +++++ |++|+|||.||+|+|||+ ..+++++++.+|...|.+++|++
T Consensus 6 ~~~~~~l~GH~~~V~s-~~~~~-g~~l~sgs~Dg~i~vWd~-~~~~~~~~~~~h~~~V~~v~~~~--------------- 67 (342)
T d2ovrb2 6 LKSPKVLKGHDDHVIT-CLQFC-GNRIVSGSDDNTLKVWSA-VTGKCLRTLVGHTGGVWSSQMRD--------------- 67 (342)
T ss_dssp CCCCEEEECSTTSCEE-EEEEE-TTEEEEEETTSCEEEEET-TTCCEEEECCCCSSCEEEEEEET---------------
T ss_pred CCcCEEECCcCCceEE-EEEEC-CCEEEEEeCCCeEEEEEC-CCCCEEEEEeCCCCCEEEEEeCC---------------
Confidence 3567889999999865 35554 679999999999999999 56788999999999999999875
Q ss_pred CcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEE
Q psy307 405 AHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVK 484 (1019)
Q Consensus 405 ~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~ 484 (1019)
.+|++|+.|+.+++|+. ...........+...+..... ....++.+..|+.+.+|+..+++....+......
T Consensus 68 -~~l~s~s~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~---- 139 (342)
T d2ovrb2 68 -NIIISGSTDRTLKVWNA-ETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA---- 139 (342)
T ss_dssp -TEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSC----
T ss_pred -Cccccceeccccccccc-ccccceecccccceeEeeeec--ccccccccccceeEEEeecccccceeeeeccccc----
Confidence 47999999999999999 555555566666666666555 3467889999999999999998876665443221
Q ss_pred EecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEc
Q psy307 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564 (1019)
Q Consensus 485 ~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fs 564 (1019)
.....+....+++++.|+.|++||.... .....+.+|. ..+ ..++
T Consensus 140 ----------------------------~~~~~~~~~~~~~~~~d~~i~~~d~~~~---~~~~~~~~~~--~~~--~~~~ 184 (342)
T d2ovrb2 140 ----------------------------VRCVQYDGRRVVSGAYDFMVKVWDPETE---TCLHTLQGHT--NRV--YSLQ 184 (342)
T ss_dssp ----------------------------EEEEEECSSCEEEEETTSCEEEEEGGGT---EEEEEECCCS--SCE--EEEE
T ss_pred ----------------------------ceeeccccceeeeecCCCeEEEeecccc---eeeEEEcCcc--ccc--cccc
Confidence 2223445678899999999999999876 3456677775 334 4455
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeecc---ccC
Q psy307 565 PDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEME---KQV 641 (1019)
Q Consensus 565 pdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~---~~v 641 (1019)
+++.++++|+.||.|++||+.+++.+..+.+|...+.++.+++ .++++++.||.|++| +....+...... .+.
T Consensus 185 ~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~s~d~~i~iw-d~~~~~~~~~~~~~~~~~ 260 (342)
T d2ovrb2 185 FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIW-DIKTGQCLQTLQGPNKHQ 260 (342)
T ss_dssp ECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET---TEEEEEETTSCEEEE-ETTTCCEEEEECSTTSCS
T ss_pred CCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC---CEEEEEcCCCEEEEE-ecccccccccccccceee
Confidence 6899999999999999999999999999999999999998875 489999999999776 433322222222 112
Q ss_pred Ccee--ecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCC
Q psy307 642 PQLY--QFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDK 719 (1019)
Q Consensus 642 ~ql~--~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~ 719 (1019)
.... .++....++...+..+..|++..++.. ..+ .+ ....-|.+.|.+++|+|++ ..+++|..||
T Consensus 261 ~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i-~~~--------~~--~~~~~~~~~v~~v~~s~~~--~~la~g~~dG 327 (342)
T d2ovrb2 261 SAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI-RNL--------VT--LESGGSGGVVWRIRASNTK--LVCAVGSRNG 327 (342)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEETTTCCEE-EEE--------EE--CTTGGGTCEEEEEEECSSE--EEEEEECSSS
T ss_pred eceeecccCCCeeEEEcCCCEEEEEECCCCCEE-EEE--------ec--ccCCCCCCCEEEEEECCCC--CEEEEEeCCC
Confidence 1111 112222222222333333333333221 000 00 0011256789999999998 7788888888
Q ss_pred c----hhhHH
Q psy307 720 N----ASLEE 725 (1019)
Q Consensus 720 ~----i~lw~ 725 (1019)
+ +++|+
T Consensus 328 t~~~~l~~~D 337 (342)
T d2ovrb2 328 TEETKLLVLD 337 (342)
T ss_dssp SSCCEEEEEE
T ss_pred CCeeEEEEEe
Confidence 7 56664
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.2e-26 Score=250.21 Aligned_cols=285 Identities=21% Similarity=0.413 Sum_probs=211.3
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVR 373 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~ 373 (1019)
.+++|+++++++.|+.|++|+.. ..++++++.+|.+.|.+++|+|+ +|++|+.|+.+++|+... .....
T Consensus 23 ~~~~g~~l~sgs~Dg~i~vWd~~-------~~~~~~~~~~h~~~V~~v~~~~~---~l~s~s~D~~~~~~~~~~-~~~~~ 91 (342)
T d2ovrb2 23 LQFCGNRIVSGSDDNTLKVWSAV-------TGKCLRTLVGHTGGVWSSQMRDN---IIISGSTDRTLKVWNAET-GECIH 91 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEETT-------TCCEEEECCCCSSCEEEEEEETT---EEEEEETTSCEEEEETTT-TEEEE
T ss_pred EEECCCEEEEEeCCCeEEEEECC-------CCCEEEEEeCCCCCEEEEEeCCC---ccccceeccccccccccc-cccee
Confidence 35679999999999999999875 34678999999999999999874 899999999999999844 33444
Q ss_pred EecccCccEeEEEEcCCCCc-----------------eeEE-------EeecCCCCcEEEEEeCCCcEEEEEccCCCeEE
Q psy307 374 TYYGHRQAVRDICFNNTGTN-----------------FISA-------IRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCV 429 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fspdg~~-----------------~vs~-------i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~ 429 (1019)
....+...+......+.... .... ..........+++++.|+.|++||+ .....+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~-~~~~~~ 170 (342)
T d2ovrb2 92 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP-ETETCL 170 (342)
T ss_dssp EECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEG-GGTEEE
T ss_pred cccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeec-ccceee
Confidence 44444444444433322100 0000 0112223457889999999999999 567788
Q ss_pred EEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCC
Q psy307 430 RTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMH 509 (1019)
Q Consensus 430 ~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~ 509 (1019)
..+.+|...+..+.+ ++..+++++.||+|++||++.++++..+..+. .
T Consensus 171 ~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~------------------------------~ 218 (342)
T d2ovrb2 171 HTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ------------------------------S 218 (342)
T ss_dssp EEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCC------------------------------S
T ss_pred EEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccc------------------------------c
Confidence 889999887766555 78899999999999999999998877665432 1
Q ss_pred cccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccc-cccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy307 510 SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHM-VAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK 588 (1019)
Q Consensus 510 ~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~-~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~ 588 (1019)
.+.++ ++++++|++++.||.|++||+...... ..+.++. ....+.++.+ +++++++|+.||+|+|||+++++
T Consensus 219 ~v~~~--~~~~~~l~s~s~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~ 291 (342)
T d2ovrb2 219 LTSGM--ELKDNILVSGNADSTVKIWDIKTGQCL---QTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGE 291 (342)
T ss_dssp CEEEE--EEETTEEEEEETTSCEEEEETTTCCEE---EEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCC
T ss_pred ceeEE--ecCCCEEEEEcCCCEEEEEeccccccc---ccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCC
Confidence 22233 334579999999999999999876433 3444332 1245666666 56799999999999999999999
Q ss_pred eeeeee-----ccCCCEEEEEEcCCCCcEEEEEeCCCc---EEEEeccce
Q psy307 589 LFKKWK-----AHDGVCISTLWHPHEPSKVVTAGWDAA---TAKVQDANI 630 (1019)
Q Consensus 589 ~l~~l~-----~h~~~V~sl~~sp~~~~~l~s~s~Dg~---I~iwwd~~i 630 (1019)
.+.++. +|.+.|++++|+|++ .++++|+.||+ -...||.++
T Consensus 292 ~i~~~~~~~~~~~~~~v~~v~~s~~~-~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 292 FIRNLVTLESGGSGGVVWRIRASNTK-LVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EEEEEEECTTGGGTCEEEEEEECSSE-EEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEEEecccCCCCCCCEEEEEECCCC-CEEEEEeCCCCCeeEEEEEeCCC
Confidence 988774 577889999999987 69999999996 124466553
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.7e-26 Score=248.69 Aligned_cols=257 Identities=19% Similarity=0.250 Sum_probs=202.2
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
+++++|+||.++|++++|+| |+||+.||+|++||+.. ...+|...|.++.+++++
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~------~~~~h~~~V~~~~~~~~~-------------- 58 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSKAQ-------------- 58 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTE------EECCCCSCEEEEECCSTT--------------
T ss_pred ceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCC------CCCCCCCCEEEEEecCCC--------------
Confidence 57899999999999999987 89999999999999842 246899999999988765
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKF 485 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~ 485 (1019)
.+++++.|++|++|++.. ..+...+.++++++++..++ .+.++.+.+|+..+++.+..+....... ++
T Consensus 59 -~~~s~s~D~~v~~w~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 126 (287)
T d1pgua2 59 -EYSSISWDDTLKVNGITK--------HEFGSQPKVASANNDGFTAV-LTNDDDLLILQSFTGDIIKSVRLNSPGS--AV 126 (287)
T ss_dssp -CCEEEETTTEEEETTEEE--------EECSSCEEEEEECSSSEEEE-EETTSEEEEEETTTCCEEEEEECSSCEE--EE
T ss_pred -eEEEEeeccccccccccc--------cccccceeeeeeccCCceEE-Eeecccceeeeccceeeeeeccccceee--ee
Confidence 578999999999999732 12345577788888876555 4567789999999999998887765544 34
Q ss_pred ecCCCeeeeccCC-----------C--ceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEecc
Q psy307 486 HPDEDKQHLDIPV-----------D--MKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGH 552 (1019)
Q Consensus 486 ~p~~~~~~~~~~~-----------~--~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh 552 (1019)
+|++...++.... . .......+...+.+++|+|++.+|++|+.||.|++||+.++... ...+.+|
T Consensus 127 ~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~--~~~~~~h 204 (287)
T d1pgua2 127 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK--TSRWAFR 204 (287)
T ss_dssp EECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--ECCSCCC
T ss_pred eccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccc--ccccccc
Confidence 5555444332111 1 11122345667899999999999999999999999999876322 2234566
Q ss_pred ccccceEEEEEcCC----------CCEEEEEeCCCeEEEEeCCC-CceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCc
Q psy307 553 MVAGYACSLDFSPD----------MSYLISGDADGKCYIWDWKT-TKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAA 621 (1019)
Q Consensus 553 ~~~~~V~~v~fspd----------g~~Lasgs~DG~I~IWDl~t-~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~ 621 (1019)
. ..|.+++|+|+ +.+|++|+.||+|+|||+.+ ++.+..+.+|.+.|++++|+|++ .++|+|.||+
T Consensus 205 ~--~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~--~l~s~g~D~~ 280 (287)
T d1pgua2 205 T--SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS--TLVSSGADAC 280 (287)
T ss_dssp S--SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT--EEEEEETTSC
T ss_pred c--cccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC--EEEEEECCCe
Confidence 6 67999999875 46899999999999999977 56777888999999999999975 6999999999
Q ss_pred EEEE
Q psy307 622 TAKV 625 (1019)
Q Consensus 622 I~iw 625 (1019)
|++|
T Consensus 281 v~iW 284 (287)
T d1pgua2 281 IKRW 284 (287)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9887
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=3.6e-25 Score=245.73 Aligned_cols=243 Identities=15% Similarity=0.188 Sum_probs=184.1
Q ss_pred CeEEEEEcCCCCcEEEEeeCCC-eEEEEecCC-CcEEEEEecccC-ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC
Q psy307 337 GISAIRWFPKSAHLLLSCSMDC-RVKLWEVYK-ERRCVRTYYGHR-QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM 413 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg-~I~IWdl~~-~~~~~~~~~gh~-~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~ 413 (1019)
.+++++|+|+ +..|+.++.+. .|+.|+... ....+..+.+|. ..|++++|+|++ ++.+|++|+.
T Consensus 19 ~~t~l~~~~~-~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~------------~g~~lasgs~ 85 (325)
T d1pgua1 19 FTTHLSYDPT-TNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK------------GSQYLCSGDE 85 (325)
T ss_dssp CCCCCEEETT-TTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSST------------TCCEEEEEET
T ss_pred CeEEEEECCC-CCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCC------------CCCEEEEEeC
Confidence 4678999997 66677665544 467777532 234566778874 679999998854 2268999999
Q ss_pred CCcEEEEEccCCC-------eEEEEEccccccEeEEEEecCCCEEEEEEc--CCeEEEEECCCCceEEEEecCCceEEEE
Q psy307 414 DCRVKLWEVYKEH-------RCVRTYYGHRQAVRDICFNNTGTNFISAGY--DRYLKLWDTESGECISRFTSRKVAYCVK 484 (1019)
Q Consensus 414 Dg~I~IWDl~~~~-------~~~~~l~~H~~~V~sl~fspdg~~l~S~s~--Dg~I~lWDl~t~~~i~~~~~~~~v~~v~ 484 (1019)
||+|+|||+.... .....+..|.++|.+++|+++++++++++. ++.+++|+..+++++..+..+
T Consensus 86 Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h------- 158 (325)
T d1pgua1 86 SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGH------- 158 (325)
T ss_dssp TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSC-------
T ss_pred CCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeec-------
Confidence 9999999985322 223345678999999999999999888765 678999999999887776543
Q ss_pred EecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCE-EEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEE
Q psy307 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKW-LACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDF 563 (1019)
Q Consensus 485 ~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~-Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~f 563 (1019)
...+.+++|+|++.+ +++++.|+.|++||............+.+|. ..|.+++|
T Consensus 159 -----------------------~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~--~~v~~v~~ 213 (325)
T d1pgua1 159 -----------------------SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG--SFVRDVEF 213 (325)
T ss_dssp -----------------------SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTT--CCEEEEEE
T ss_pred -----------------------ccccccccccccccceEEEeecccccccccccccccceecccccCCC--CccEEeee
Confidence 244556666777665 6789999999999987653332222333343 77999999
Q ss_pred cCC-CCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEc---CCCCcEEEEEeCCCcEEEE
Q psy307 564 SPD-MSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWH---PHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 564 spd-g~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~s---p~~~~~l~s~s~Dg~I~iw 625 (1019)
+|+ +.+|++|+.||.|++||+++++.+.++.+|...+.++.|+ |++ .+|++++.||.|++|
T Consensus 214 ~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg-~~l~s~s~D~~i~iw 278 (325)
T d1pgua1 214 SPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS-QKFATVGADATIRVW 278 (325)
T ss_dssp CSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSS-SEEEEEETTSEEEEE
T ss_pred ccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCC-CEEEEEeCCCeEEEE
Confidence 996 6899999999999999999999999999888766554444 455 689999999999765
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=2.2e-24 Score=245.74 Aligned_cols=283 Identities=14% Similarity=0.128 Sum_probs=200.5
Q ss_pred CCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEE------cCCCCcEEEEeeCCCeEEEEecCCCcE
Q psy307 297 QGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRW------FPKSAHLLLSCSMDCRVKLWEVYKERR 370 (1019)
Q Consensus 297 ~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~f------spd~g~lLaSgs~Dg~I~IWdl~~~~~ 370 (1019)
.++.+++++.|+.|++|+..... ...|.........|...+..+.. ++....++++++.||.|++|++.....
T Consensus 23 ~~~~l~S~S~D~~iriWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~ 101 (393)
T d1sq9a_ 23 CNSFTVSCSGDGYLKVWDNKLLD-NENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDE 101 (393)
T ss_dssp CSSEEEEEETTSEEEEEESBCCT-TCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTT
T ss_pred eCCEEEEEECCCeEEEEECCCCC-CCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCc
Confidence 45789999999999999865333 22344445555567666544433 222345788999999999999743211
Q ss_pred ---EE-EEe-----cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC--------------e
Q psy307 371 ---CV-RTY-----YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH--------------R 427 (1019)
Q Consensus 371 ---~~-~~~-----~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~--------------~ 427 (1019)
.. ... ..+...+..++|.+++. .....++++++.||.|++|++.... .
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 172 (393)
T d1sq9a_ 102 TKKVIFEKLDLLDSDMKKHSFWALKWGASND---------RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE 172 (393)
T ss_dssp TCCEEEEEECCSCTTGGGSCEEEEEEECCC-------------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEE
T ss_pred eeeeeccccceeeeccCCCceEEEEEecCCC---------cccccEEEEEcCCCcEEEEEeecCCcccceeeeeecccee
Confidence 11 111 12344566666666542 1123689999999999999984221 0
Q ss_pred ---EEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeee
Q psy307 428 ---CVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIA 504 (1019)
Q Consensus 428 ---~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~ 504 (1019)
.......+...+.+++|+|++ +|++|+.||+|+|||+.+++++..+.... ..
T Consensus 173 ~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~------------------------~l 227 (393)
T d1sq9a_ 173 LQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQH------------------------SM 227 (393)
T ss_dssp EEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC--------------------------
T ss_pred cccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccccc------------------------cc
Confidence 111223456679999999997 89999999999999999998887765422 12
Q ss_pred CCCCCcccEEEEcCCCCEEEEEecCC---eEEEEEccCcccccce----------eEEeccccccceEEEEEcCCCCEEE
Q psy307 505 DPTMHSMPAVTSSPNNKWLACQSMDN---KILIFSALNRFKLNRK----------KTFEGHMVAGYACSLDFSPDMSYLI 571 (1019)
Q Consensus 505 ~~~~~~i~~v~~spdg~~Lasgs~Dg---~I~iwd~~~~~~~~~~----------~~l~gh~~~~~V~~v~fspdg~~La 571 (1019)
..|...|.+++|+|+|++|++|+.|+ .|++||+.++.....+ ..+.+|. +.|++++|+|||++|+
T Consensus 228 ~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~--~~V~~l~fspd~~~l~ 305 (393)
T d1sq9a_ 228 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS--SWVMSLSFNDSGETLC 305 (393)
T ss_dssp -CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBS--SCEEEEEECSSSSEEE
T ss_pred ccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeeccc--CceeeeccCCCCCeeE
Confidence 34567899999999999999999987 4999999876433211 1234676 7799999999999999
Q ss_pred EEeCCCeEEEEeCCCCceeeeeeccCCCEE----EEEEcCCCCcEEEEEe
Q psy307 572 SGDADGKCYIWDWKTTKLFKKWKAHDGVCI----STLWHPHEPSKVVTAG 617 (1019)
Q Consensus 572 sgs~DG~I~IWDl~t~~~l~~l~~h~~~V~----sl~~sp~~~~~l~s~s 617 (1019)
+|+.||+|+|||+.+++++.++++|.+.|. .++|+|++. .+++++
T Consensus 306 S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~-~~~~~~ 354 (393)
T d1sq9a_ 306 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD-SLAEPG 354 (393)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSC-BCSSCC
T ss_pred EECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCC-EEEEcc
Confidence 999999999999999999999999987664 467777773 444443
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.7e-24 Score=229.99 Aligned_cols=288 Identities=19% Similarity=0.337 Sum_probs=208.8
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
+.++...+|...|+|++| + +++|+||+.||+|+|||+ ..++++.++.+|...|.+++|. +
T Consensus 6 ~~i~~~~~~~~~V~c~~~--d-~~~l~sgs~Dg~i~vWd~-~~~~~~~~l~~H~~~V~~v~~~--~-------------- 65 (293)
T d1p22a2 6 QRIHCRSETSKGVYCLQY--D-DQKIVSGLRDNTIKIWDK-NTLECKRILTGHTGSVLCLQYD--E-------------- 65 (293)
T ss_dssp CCEECCCSSCCCEEEEEC--C-SSEEEEEESSSCEEEEES-SSCCEEEEECCCSSCEEEEECC--S--------------
T ss_pred EEEeccCCCCCCEEEEEE--c-CCEEEEEeCCCeEEEEEC-CCCcEEEEEecCCCCEeeeecc--c--------------
Confidence 456777889999999875 3 679999999999999999 5678899999999999998773 3
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKF 485 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~ 485 (1019)
++|++|+.||.|++|++.... .......+.... ..+.+....+++++.++.+.+||..+.........
T Consensus 66 ~~l~s~s~D~~i~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 133 (293)
T d1p22a2 66 RVIITGSSDSTVRVWDVNTGE-MLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRV--------- 133 (293)
T ss_dssp SEEEEEETTSCEEEEESSSCC-EEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEE---------
T ss_pred ceeeccccccccccccccccc-cccccccccccc--ccccccccceeecccccceeEeecccccccccccc---------
Confidence 689999999999999995444 444443333333 24555677899999999999999887653222110
Q ss_pred ecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcC
Q psy307 486 HPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP 565 (1019)
Q Consensus 486 ~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp 565 (1019)
...+...+..+. +....+++++.|+.|++||+.+. .....+.++. ..+..+.+
T Consensus 134 ------------------~~~~~~~v~~~~--~~~~~~~~~s~d~~i~~~d~~~~---~~~~~~~~~~--~~v~~~~~-- 186 (293)
T d1p22a2 134 ------------------LVGHRAAVNVVD--FDDKYIVSASGDRTIKVWNTSTC---EFVRTLNGHK--RGIACLQY-- 186 (293)
T ss_dssp ------------------ECCCSSCEEEEE--EETTEEEEEETTSEEEEEETTTC---CEEEEEECCS--SCEEEEEE--
T ss_pred ------------------ccccccccccce--ecccccccccCCCceeeecCCCC---cEEEEEcccc--cccccccC--
Confidence 111122233333 34567889999999999999877 3456677776 45666666
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCcee
Q psy307 566 DMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLY 645 (1019)
Q Consensus 566 dg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~ 645 (1019)
++.++++|+.||.|++||+++.+.+..+.+|...+..+. +++ .+|++++.||.|++| +...... ..
T Consensus 187 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~--~~~-~~l~sg~~dg~i~iw-d~~~~~~--------~~-- 252 (293)
T d1p22a2 187 RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR--FDN-KRIVSGAYDGKIKVW-DLVAALD--------PR-- 252 (293)
T ss_dssp ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE--CCS-SEEEEEETTSCEEEE-EHHHHTS--------TT--
T ss_pred CCCeEEEecCCCEEEEEecccceeeeeecccceeeeecc--ccc-eEEEEEcCCCEEEEE-ECCCCcc--------cc--
Confidence 567899999999999999999999999999998887654 444 589999999999776 2211000 00
Q ss_pred ecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCchhhHH
Q psy307 646 QFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNASLEE 725 (1019)
Q Consensus 646 ~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~ 725 (1019)
.. .+......+ .-|.+.|++++|+|.. |++++.|++|+||+
T Consensus 253 -------------------~~-~~~~~~~~~---------------~~H~~~V~~v~~d~~~----l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 253 -------------------AP-AGTLCLRTL---------------VEHSGRVFRLQFDEFQ----IVSSSHDDTILIWD 293 (293)
T ss_dssp -------------------SC-TTTTEEEEE---------------CCCSSCCCCEEECSSC----EEECCSSSEEEEEC
T ss_pred -------------------cc-CCceeeEEe---------------cCCCCCEEEEEEcCCE----EEEEecCCEEEEeC
Confidence 00 000011111 1377889999997764 99999999999995
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=4e-24 Score=228.67 Aligned_cols=260 Identities=21% Similarity=0.363 Sum_probs=201.7
Q ss_pred CCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEE
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRT 374 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~ 374 (1019)
+++|+.+++|+.|+.|++|+.. ..+++.++++|.+.|++++|+ +++|+||+.||.|++|++... .....
T Consensus 22 ~~d~~~l~sgs~Dg~i~vWd~~-------~~~~~~~l~~H~~~V~~v~~~---~~~l~s~s~D~~i~~~~~~~~-~~~~~ 90 (293)
T d1p22a2 22 QYDDQKIVSGLRDNTIKIWDKN-------TLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTG-EMLNT 90 (293)
T ss_dssp ECCSSEEEEEESSSCEEEEESS-------SCCEEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEESSSC-CEEEE
T ss_pred EEcCCEEEEEeCCCeEEEEECC-------CCcEEEEEecCCCCEeeeecc---cceeecccccccccccccccc-ccccc
Confidence 4579999999999999999875 346789999999999999984 569999999999999999544 33444
Q ss_pred ecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC--eEEEEEccccccEeEEEEecCCCEEE
Q psy307 375 YYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH--RCVRTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 375 ~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~--~~~~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
...+...... +.+.. ..++++..++.+.+|+..... .....+..|...|.++.+.+ ..++
T Consensus 91 ~~~~~~~~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~ 152 (293)
T d1p22a2 91 LIHHCEAVLH--LRFNN--------------GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIV 152 (293)
T ss_dssp ECCCCSCEEE--EECCT--------------TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEE
T ss_pred cccccccccc--ccccc--------------cceeecccccceeEeeccccccccccccccccccccccceecc--cccc
Confidence 4333333222 22222 578999999999999986544 35566778899998877754 5788
Q ss_pred EEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeE
Q psy307 453 SAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKI 532 (1019)
Q Consensus 453 S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I 532 (1019)
+++.|+.|++||+++++++..+..+.. .+. .+++++.++++++.||.|
T Consensus 153 ~~s~d~~i~~~d~~~~~~~~~~~~~~~------------------------------~v~--~~~~~~~~l~~~~~dg~i 200 (293)
T d1p22a2 153 SASGDRTIKVWNTSTCEFVRTLNGHKR------------------------------GIA--CLQYRDRLVVSGSSDNTI 200 (293)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSS------------------------------CEE--EEEEETTEEEEEETTSCE
T ss_pred cccCCCceeeecCCCCcEEEEEccccc------------------------------ccc--cccCCCCeEEEecCCCEE
Confidence 999999999999999998877764321 122 223356789999999999
Q ss_pred EEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CceeeeeeccCCCEEEE
Q psy307 533 LIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKT---------TKLFKKWKAHDGVCIST 603 (1019)
Q Consensus 533 ~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t---------~~~l~~l~~h~~~V~sl 603 (1019)
++||+.+.. .+..+.++. ..+. .+++++.+|++|+.||.|++||+.+ ...+..+.+|.+.|+++
T Consensus 201 ~i~d~~~~~---~~~~~~~~~--~~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v 273 (293)
T d1p22a2 201 RLWDIECGA---CLRVLEGHE--ELVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL 273 (293)
T ss_dssp EEEETTTCC---EEEEECCCS--SCEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred EEEecccce---eeeeecccc--eeee--eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEE
Confidence 999998763 345666665 4454 4667889999999999999999754 34577889999999999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEE
Q psy307 604 LWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 604 ~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+|++ .+|+|||.||+|++|
T Consensus 274 ~~d~---~~l~s~s~Dg~i~iW 292 (293)
T d1p22a2 274 QFDE---FQIVSSSHDDTILIW 292 (293)
T ss_dssp EECS---SCEEECCSSSEEEEE
T ss_pred EEcC---CEEEEEecCCEEEEe
Confidence 9964 479999999999876
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1.4e-24 Score=247.34 Aligned_cols=289 Identities=12% Similarity=0.134 Sum_probs=195.8
Q ss_pred ceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-----EEEEEecccCccEeEEEEcCCCCceeEEEeec
Q psy307 327 QVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-----RCVRTYYGHRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 327 ~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-----~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
.....++|.+.|.++++++ .+++|||.|++|+|||..... ........|...+..+... ..+...
T Consensus 6 ~~~~~~~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 75 (393)
T d1sq9a_ 6 TANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL-------QAIERD 75 (393)
T ss_dssp EEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEE-------EEEETT
T ss_pred eeecCCcccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeE-------eeeccC
Confidence 3567789999999999865 489999999999999974321 1122223344444333221 112222
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCCCeE----EEEE-----ccccccEeEEEEecCC-----CEEEEEEcCCeEEEEECCC
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYKEHRC----VRTY-----YGHRQAVRDICFNNTG-----TNFISAGYDRYLKLWDTES 467 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~~~~~----~~~l-----~~H~~~V~sl~fspdg-----~~l~S~s~Dg~I~lWDl~t 467 (1019)
.....++++++.||.|++|++...... .... ..+...+..++|.+++ .++++++.||+|++||+..
T Consensus 76 ~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~ 155 (393)
T d1sq9a_ 76 AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 155 (393)
T ss_dssp TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred CCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeec
Confidence 223357889999999999998543321 1111 2355678888888763 5789999999999999753
Q ss_pred CceEE-EEecC-CceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCccccc-
Q psy307 468 GECIS-RFTSR-KVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLN- 544 (1019)
Q Consensus 468 ~~~i~-~~~~~-~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~- 544 (1019)
..... .+... .....+.. .......+...+.+++++|++ +|++|+.||+|++||+.++....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~ 220 (393)
T d1sq9a_ 156 FADESNSLTLNWSPTLELQG--------------TVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYN 220 (393)
T ss_dssp SSSHHHHTTTCCCCEEEEEE--------------EECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEE
T ss_pred CCcccceeeeeeccceeccc--------------ceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccc
Confidence 32100 00000 00000000 001112233457889999998 88999999999999998764332
Q ss_pred --ceeEEeccccccceEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceeeeee-------------ccCCCEEEEEEc
Q psy307 545 --RKKTFEGHMVAGYACSLDFSPDMSYLISGDADG---KCYIWDWKTTKLFKKWK-------------AHDGVCISTLWH 606 (1019)
Q Consensus 545 --~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG---~I~IWDl~t~~~l~~l~-------------~h~~~V~sl~~s 606 (1019)
....+.+|. ..|.+++|+|||++|++|+.|+ .|++||+.+++.+..+. +|.+.|++++|+
T Consensus 221 ~~~~~~l~~h~--~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fs 298 (393)
T d1sq9a_ 221 FESQHSMINNS--NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 298 (393)
T ss_dssp EECCC---CCC--CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEEC
T ss_pred ccccccccccc--ceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccC
Confidence 223455666 7799999999999999999987 49999999998877764 799999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCce
Q psy307 607 PHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQL 644 (1019)
Q Consensus 607 p~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql 644 (1019)
|++ .+|+|||.||+|++| |...++....+.++...+
T Consensus 299 pd~-~~l~S~s~D~~v~vW-d~~~g~~~~~l~gH~~~v 334 (393)
T d1sq9a_ 299 DSG-ETLCSAGWDGKLRFW-DVKTKERITTLNMHCDDI 334 (393)
T ss_dssp SSS-SEEEEEETTSEEEEE-ETTTTEEEEEEECCGGGC
T ss_pred CCC-CeeEEECCCCEEEEE-ECCCCCEEEEECCcCCcc
Confidence 998 699999999999665 666666666665555443
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=4.2e-24 Score=233.33 Aligned_cols=268 Identities=12% Similarity=-0.004 Sum_probs=194.3
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc--EEEEEecccCccEeEEEEcCCCCceeEEEeecCC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER--RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPK 403 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~--~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~ 403 (1019)
+.++..++|++.|++|+|+|+ +.+|++||.||+|+|||+.... ..+....+|..+|.+++|+|++.
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~-~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~----------- 69 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD----------- 69 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSS-----------
T ss_pred CeEEcCCCCCCCEEEEEEeCC-CCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCC-----------
Confidence 467788999999999999996 8899999999999999985432 23344457999999999988653
Q ss_pred CCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEE
Q psy307 404 SAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCV 483 (1019)
Q Consensus 404 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v 483 (1019)
.+|++|+.||.|++|++............+........+.+++..+++++.|+++++||++++..........
T Consensus 70 --~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~----- 142 (342)
T d1yfqa_ 70 --LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL----- 142 (342)
T ss_dssp --EEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEES-----
T ss_pred --CEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeeccc-----
Confidence 6899999999999999966555555445555555666777888899999999999999986543322111000
Q ss_pred EEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEE
Q psy307 484 KFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDF 563 (1019)
Q Consensus 484 ~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~f 563 (1019)
.............+.+.+..+++++.|+.|++|++..............+. ..+.+..+
T Consensus 143 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 201 (342)
T d1yfqa_ 143 -------------------NSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK--YQIRDVAL 201 (342)
T ss_dssp -------------------CSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCS--SCEEEEEE
T ss_pred -------------------ccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccc--cceeeeEe
Confidence 000112234456778889999999999999999998765443333333332 33444444
Q ss_pred -cCCCCEEEEEeCCCeEEEEeCCCCcee---------------eeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEec
Q psy307 564 -SPDMSYLISGDADGKCYIWDWKTTKLF---------------KKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQD 627 (1019)
Q Consensus 564 -spdg~~Lasgs~DG~I~IWDl~t~~~l---------------~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd 627 (1019)
+.++..+++++.||.+.+|++...... .....|...|++++|+|++ .+|+|||.||+|++| |
T Consensus 202 ~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~lasg~~Dg~v~vW-D 279 (342)
T d1yfqa_ 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCW-N 279 (342)
T ss_dssp CSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEE-E
T ss_pred ecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCc-cEEEEECCCCEEEEE-E
Confidence 457789999999999999998643211 1123566789999999998 589999999999665 5
Q ss_pred cceeeeee
Q psy307 628 ANIVKIAV 635 (1019)
Q Consensus 628 ~~i~ki~~ 635 (1019)
.+..+.+.
T Consensus 280 ~~~~~~l~ 287 (342)
T d1yfqa_ 280 LQTRKKIK 287 (342)
T ss_dssp TTTTEEEE
T ss_pred CCCCcEEE
Confidence 55444443
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=4.1e-24 Score=233.43 Aligned_cols=284 Identities=9% Similarity=0.030 Sum_probs=198.2
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.++++|+.+++++.|+.|++|+...... ...+....+|.++|++++|+|+++.+|++|+.||.|++|++.......
T Consensus 18 ~fsp~~~~L~s~s~Dg~v~iwd~~~~~~----~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~ 93 (342)
T d1yfqa_ 18 KIIPSKSLLLITSWDGSLTVYKFDIQAK----NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ 93 (342)
T ss_dssp EEEGGGTEEEEEETTSEEEEEEEETTTT----EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE
T ss_pred EEeCCCCEEEEEECCCeEEEEEccCCCc----ceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccc
Confidence 3567899999999999999998764321 123344457999999999999878899999999999999996544433
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC---eEEEEEccc--cccEeEEEEecC
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH---RCVRTYYGH--RQAVRDICFNNT 447 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~---~~~~~l~~H--~~~V~sl~fspd 447 (1019)
.....+........+.+++ ..+++++.|+++++||++... ........+ ......+.+.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (342)
T d1yfqa_ 94 ALTNNEANLGICRICKYGD--------------DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN 159 (342)
T ss_dssp ECBSCCCCSCEEEEEEETT--------------TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred ccccccccccccccccccc--------------ccccccccccccceeeccccccceeeecccccccccceeeeeeeecc
Confidence 3333333333333344333 689999999999999985432 233333333 234556677888
Q ss_pred CCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEE-EcCCCCEEEEE
Q psy307 448 GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVT-SSPNNKWLACQ 526 (1019)
Q Consensus 448 g~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~-~spdg~~Lasg 526 (1019)
+..+++++.|+.|++||+..+........ .......+.+.. +..++..++++
T Consensus 160 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 212 (342)
T d1yfqa_ 160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIE---------------------------ESGLKYQIRDVALLPKEQEGYACS 212 (342)
T ss_dssp SSEEEEEESTTEEEEEESSCCTTCCCEEE---------------------------ECSCSSCEEEEEECSGGGCEEEEE
T ss_pred CCceeeecCCCcEEEEecccCcccceeee---------------------------ecccccceeeeEeecCCCCEEEee
Confidence 99999999999999999987653221110 001112222333 34467889999
Q ss_pred ecCCeEEEEEccCccccc---ceeE---------EeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee
Q psy307 527 SMDNKILIFSALNRFKLN---RKKT---------FEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK 594 (1019)
Q Consensus 527 s~Dg~I~iwd~~~~~~~~---~~~~---------l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~ 594 (1019)
+.||.+.+|+........ .... ..+|. ..+.+++|+|++++|++|+.||.|+|||+.+++.+..+.
T Consensus 213 s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~ 290 (342)
T d1yfqa_ 213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA--YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290 (342)
T ss_dssp ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSC--CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred cCCCeEEEEEecCCcceeeccccceeeeeeeccCCCccc--ccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec
Confidence 999999999986542211 0111 11222 568899999999999999999999999999999999886
Q ss_pred ccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 595 AHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 595 ~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.+. .+..++|+|++ ..+++++.|++++.|
T Consensus 291 ~~~-~~~~~~~s~~~-~~l~~a~sdd~~~~~ 319 (342)
T d1yfqa_ 291 KFN-EDSVVKIACSD-NILCLATSDDTFKTN 319 (342)
T ss_dssp CCS-SSEEEEEEECS-SEEEEEEECTHHHHC
T ss_pred CCC-CCEEEEEEeCC-CEEEEEEcCCcEEEe
Confidence 543 33456677777 578888888877655
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=4.7e-22 Score=214.80 Aligned_cols=235 Identities=15% Similarity=0.119 Sum_probs=170.8
Q ss_pred eeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCc
Q psy307 301 FLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQ 380 (1019)
Q Consensus 301 ~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~ 380 (1019)
+++++.|+.|++|+... ...+|...|.+++++++ ..+++++.|++|++|++... . ...
T Consensus 24 l~sgs~Dg~v~~Wd~~~------------~~~~h~~~V~~~~~~~~--~~~~s~s~D~~v~~w~~~~~-~-------~~~ 81 (287)
T d1pgua2 24 LISGSYDGRIMEWSSSS------------MHQDHSNLIVSLDNSKA--QEYSSISWDDTLKVNGITKH-E-------FGS 81 (287)
T ss_dssp TEEEETTSCEEETTTTE------------EECCCCSCEEEEECCST--TCCEEEETTTEEEETTEEEE-E-------CSS
T ss_pred EEEEeCCCeEEEEECCC------------CCCCCCCCEEEEEecCC--CeEEEEeecccccccccccc-c-------ccc
Confidence 89999999999997642 34689999999999873 46899999999999987321 0 112
Q ss_pred cEeEEEEcCCCCceeE-------------------------EEeecCCCCcEEEEEeCC-CcEEEEEccCCCeEEEEEcc
Q psy307 381 AVRDICFNNTGTNFIS-------------------------AIRWFPKSAHLLLSCSMD-CRVKLWEVYKEHRCVRTYYG 434 (1019)
Q Consensus 381 ~V~~i~fspdg~~~vs-------------------------~i~~~p~~~~~L~sgs~D-g~I~IWDl~~~~~~~~~l~~ 434 (1019)
.+.++.+++++..++. +.++++.. ..+++++.+ +.|++|++............
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~ 160 (287)
T d1pgua2 82 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQ-NYVAVGLEEGNTIQVFKLSDLEVSFDLKTP 160 (287)
T ss_dssp CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECS-SEEEEEETTTSCEEEEETTEEEEEEECSSC
T ss_pred ceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccC-cceeeeccccceeeeeeccccceeeeeeec
Confidence 2333333333322211 12234444 455555555 57999998544444444456
Q ss_pred ccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEE-ec-CCceEEEEEecCCCeeeeccCCCceeeeCCCCCccc
Q psy307 435 HRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRF-TS-RKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMP 512 (1019)
Q Consensus 435 H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~-~~-~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~ 512 (1019)
|.+.|++++|+|++.+|++|+.||.|++||+.++...... .. ...+.+++|+|.+. .
T Consensus 161 ~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~---------------------~ 219 (287)
T d1pgua2 161 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK---------------------G 219 (287)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-----------------------
T ss_pred cCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeeccccc---------------------c
Confidence 8899999999999999999999999999999998876543 32 35688888888753 1
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy307 513 AVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDW 584 (1019)
Q Consensus 513 ~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl 584 (1019)
.....+++.+|++|+.|++|++||+.... .....+.+|. ..|++++|+|++ .|++++.||+|++||+
T Consensus 220 ~~~~~~~~~~l~sgs~D~~i~iw~~~~~~--~~~~~~~~h~--~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPM--KIIKALNAHK--DGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp ----CCSCCEEEEEETTSCEEEEESSCTT--CCEEETTSST--TCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred cccccCCCCeeEeecCCCeEEEEECCCCC--eEEEEeCCCC--CCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 23445678899999999999999987643 3355667787 679999999987 5888999999999985
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.87 E-value=2.2e-22 Score=223.33 Aligned_cols=295 Identities=8% Similarity=-0.007 Sum_probs=210.0
Q ss_pred CCCCC-CCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCC-C-eEEEEecCCC
Q psy307 292 DPTDY-QGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMD-C-RVKLWEVYKE 368 (1019)
Q Consensus 292 ~~~~~-~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~D-g-~I~IWdl~~~ 368 (1019)
..+++ +|++++.+. ++.|.+|+.... ..+ .+ +|...|.+++|+|+ +..|++++.+ | .|++||+..
T Consensus 8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~-------~~~-~~-~~~~~v~~~~~spD-g~~l~~~~~~~g~~v~v~d~~~- 75 (360)
T d1k32a3 8 EDFSPLDGDLIAFVS-RGQAFIQDVSGT-------YVL-KV-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT- 75 (360)
T ss_dssp EEEEECGGGCEEEEE-TTEEEEECTTSS-------BEE-EC-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT-
T ss_pred ccccCCCCCEEEEEE-CCeEEEEECCCC-------cEE-Ec-cCCCCEEEEEECCC-CCEEEEEEcCCCCEEEEEECCC-
Confidence 44677 899998875 578999976532 222 23 79999999999997 5666655544 3 799999843
Q ss_pred cEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCC
Q psy307 369 RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTG 448 (1019)
Q Consensus 369 ~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg 448 (1019)
+ ....+..|...|.+++|+|+| ++|++++.++.+++|++ ........+..|...+.+++|+|+|
T Consensus 76 ~-~~~~~~~~~~~v~~~~~spdg--------------~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~spdg 139 (360)
T d1k32a3 76 G-KAEKFEENLGNVFAMGVDRNG--------------KFAVVANDRFEIMTVDL-ETGKPTVIERSREAMITDFTISDNS 139 (360)
T ss_dssp C-CEEECCCCCCSEEEEEECTTS--------------SEEEEEETTSEEEEEET-TTCCEEEEEECSSSCCCCEEECTTS
T ss_pred C-cEEEeeCCCceEEeeeecccc--------------cccceeccccccccccc-cccceeeeeecccccccchhhccce
Confidence 3 345678899999999999999 69999999999999999 6677788889999999999999999
Q ss_pred CEEEEEEc----------CCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeee--------------
Q psy307 449 TNFISAGY----------DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIA-------------- 504 (1019)
Q Consensus 449 ~~l~S~s~----------Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~-------------- 504 (1019)
++|+.++. ++.+++||+.+++..........+.++.|+|++..+++..........
T Consensus 140 ~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~ 219 (360)
T d1k32a3 140 RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSK 219 (360)
T ss_dssp CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBE
T ss_pred eeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccc
Confidence 99986553 456999999999887777777788899999999877653221111111
Q ss_pred ----CCCCCcccEEEEcCCCCEEEEEecCC-----eEEEEEccCcccccceeEEeccccccceEEEEEcCC---CCEEEE
Q psy307 505 ----DPTMHSMPAVTSSPNNKWLACQSMDN-----KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPD---MSYLIS 572 (1019)
Q Consensus 505 ----~~~~~~i~~v~~spdg~~Lasgs~Dg-----~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspd---g~~Las 572 (1019)
..+......+.+++++..++++..+. .+..++...+. ...+..+. +.+..+.+.+. +.++++
T Consensus 220 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 293 (360)
T d1k32a3 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD----YRMIIPLE--SSILIYSVPVHGEFAAYYQG 293 (360)
T ss_dssp EEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBC----EEEEEECS--SEEEEEECCCCCSHHHHHHC
T ss_pred eEEEecccCccccceECCCcCcccccceeecccccceeecccCcCc----eeEeeecC--CCceEEEEEecCCCeeEEEe
Confidence 11222233345566666665544332 23333333221 12222222 22444454444 446788
Q ss_pred EeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 573 GDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 573 gs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
++.++.|++||+.+++.. .|.+.|.+++|+||| ++|++++.||.|++|
T Consensus 294 ~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG-~~l~~~~~Dg~i~v~ 341 (360)
T d1k32a3 294 APEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADR-KTVMVRKDDGKIYTF 341 (360)
T ss_dssp CCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTS-CEEEEEETTSCEEEE
T ss_pred cCCCCEEEEEECCCCeEE----EecCCcCEEEECCCC-CEEEEEECCCeEEEE
Confidence 889999999999987643 345568999999998 689999999999765
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.86 E-value=2.2e-21 Score=215.20 Aligned_cols=222 Identities=12% Similarity=0.004 Sum_probs=162.6
Q ss_pred EEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC--Cc
Q psy307 339 SAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD--CR 416 (1019)
Q Consensus 339 ~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D--g~ 416 (1019)
.+-.|||.+|+++++++ +|.|.+||+. ++...+ + +|...|.+++|+||| ++|++++.+ ..
T Consensus 6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~-~~~~~~-~-~~~~~v~~~~~spDg--------------~~l~~~~~~~g~~ 67 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVS-RGQAFIQDVS-GTYVLK-V-PEPLRIRYVRRGGDT--------------KVAFIHGTREGDF 67 (360)
T ss_dssp GEEEEEECGGGCEEEEE-TTEEEEECTT-SSBEEE-C-SCCSCEEEEEECSSS--------------EEEEEEEETTEEE
T ss_pred hcccccCCCCCEEEEEE-CCeEEEEECC-CCcEEE-c-cCCCCEEEEEECCCC--------------CEEEEEEcCCCCE
Confidence 44679995588888876 5799999994 444444 3 799999999999999 566665544 37
Q ss_pred EEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeecc
Q psy307 417 VKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDI 496 (1019)
Q Consensus 417 I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~ 496 (1019)
|++||+. ++ ....+..|...|.+++|+|+|++|++++.++.+++|++.++++...+..+
T Consensus 68 v~v~d~~-~~-~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 126 (360)
T d1k32a3 68 LGIYDYR-TG-KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR------------------- 126 (360)
T ss_dssp EEEEETT-TC-CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-------------------
T ss_pred EEEEECC-CC-cEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecc-------------------
Confidence 9999984 33 34567889999999999999999999999999999999998876655432
Q ss_pred CCCceeeeCCCCCcccEEEEcCCCCEEEEEe----------cCCeEEEEEccCcccccceeEEeccccccceEEEEEcCC
Q psy307 497 PVDMKYIADPTMHSMPAVTSSPNNKWLACQS----------MDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPD 566 (1019)
Q Consensus 497 ~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs----------~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspd 566 (1019)
...+.+++|+|+|++|+.++ .++.+++|++.++.. ..+..+. ..+..++|+||
T Consensus 127 -----------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~----~~~~~~~--~~~~~~~~spd 189 (360)
T d1k32a3 127 -----------EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI----FAATTEN--SHDYAPAFDAD 189 (360)
T ss_dssp -----------SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE----EECSCSS--SBEEEEEECTT
T ss_pred -----------cccccchhhccceeeeeeeccccccceeeccccceeeeccccCce----eeecccc--cccccccccCC
Confidence 23455677788888887553 345799999987522 2222333 55788999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCce-------eeeeeccCCCEEEEEEcCCCCcEEEEEe
Q psy307 567 MSYLISGDADGKCYIWDWKTTKL-------FKKWKAHDGVCISTLWHPHEPSKVVTAG 617 (1019)
Q Consensus 567 g~~Lasgs~DG~I~IWDl~t~~~-------l~~l~~h~~~V~sl~~sp~~~~~l~s~s 617 (1019)
|++|++++.++.+.+||...... ...+..|...+..+.|++++ ..++++.
T Consensus 190 g~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~ 246 (360)
T d1k32a3 190 SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRS-MTSEAGE 246 (360)
T ss_dssp SCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGG-GSCCCCC
T ss_pred CCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCc-Ccccccc
Confidence 99999999999999999765433 22333444445555666665 3444333
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.85 E-value=4e-20 Score=212.74 Aligned_cols=313 Identities=9% Similarity=0.015 Sum_probs=207.1
Q ss_pred CCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcE-E---E
Q psy307 297 QGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERR-C---V 372 (1019)
Q Consensus 297 ~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~-~---~ 372 (1019)
.+-.+++...|+.|++|+.. ..+.+.++.+|. .+..++|+|| |++|++++.||+|++||+.+... . +
T Consensus 31 ~~~~~V~~~~dg~v~vwD~~-------t~~~~~~l~~g~-~~~~vafSPD-Gk~l~~~~~d~~v~vwd~~t~~~~~~~~i 101 (426)
T d1hzua2 31 PNLFSVTLRDAGQIALVDGD-------SKKIVKVIDTGY-AVHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTKVAEI 101 (426)
T ss_dssp GGEEEEEETTTTEEEEEETT-------TCSEEEEEECCS-SEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred CeEEEEEEcCCCEEEEEECC-------CCcEEEEEeCCC-CeeEEEECCC-CCEEEEEeCCCCEEEEEccCCceeEEEEE
Confidence 33456788889999999876 346788998885 6999999996 78999999999999999954432 1 2
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccE-----------eE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAV-----------RD 441 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V-----------~s 441 (1019)
....+|...+.+++|+|||. .+++++..++.+++||. ....+...+.+|...+ ..
T Consensus 102 ~~~~~~~~~~~s~~~spDG~-------------~l~v~~~~~~~v~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (426)
T d1hzua2 102 KIGIEARSVESSKFKGYEDR-------------YTIAGAYWPPQFAIMDG-ETLEPKQIVSTRGMTVDTQTYHPEPRVAA 167 (426)
T ss_dssp ECCSEEEEEEECCSTTCTTT-------------EEEEEEEESSEEEEEET-TTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred eCCCCCcceEEeeeecCCCC-------------EEEEeecCCCeEEEEcC-CccceeEEeeccCCCccceeecCCCceeE
Confidence 22345666677777777773 45567778999999999 5666776766655444 44
Q ss_pred EEEecCCCEEEEEEc-CCeEEEEECCCCc--eEEEEecCCceEEEEEecCCCeeeeccCCCc-eeeeC------------
Q psy307 442 ICFNNTGTNFISAGY-DRYLKLWDTESGE--CISRFTSRKVAYCVKFHPDEDKQHLDIPVDM-KYIAD------------ 505 (1019)
Q Consensus 442 l~fspdg~~l~S~s~-Dg~I~lWDl~t~~--~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~-~~i~~------------ 505 (1019)
+.+++++..++.... .+.+.+++...+. .+..+.....+..+.++|++........... .....
T Consensus 168 i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 247 (426)
T d1hzua2 168 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV 247 (426)
T ss_dssp EEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEecc
Confidence 455555555444333 3455555555443 3344556677889999999886655322111 11111
Q ss_pred -CCCCcccEEEEcCCCC-EE--EEEecCCeEEEEEccCcc----cccceeEEeccccccceEEEEEcCCCCEEEE-----
Q psy307 506 -PTMHSMPAVTSSPNNK-WL--ACQSMDNKILIFSALNRF----KLNRKKTFEGHMVAGYACSLDFSPDMSYLIS----- 572 (1019)
Q Consensus 506 -~~~~~i~~v~~spdg~-~L--asgs~Dg~I~iwd~~~~~----~~~~~~~l~gh~~~~~V~~v~fspdg~~Las----- 572 (1019)
...+......+...+. .+ +..+.|+.+.+|+..... .......+.+|. ..+..++|+|||++|++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~--~~v~~v~~sPdg~~l~v~~~~~ 325 (426)
T d1hzua2 248 GKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG--GGSLFIKTHPKSSHLYVDTTFN 325 (426)
T ss_dssp SSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSS--SCCCCEECCTTCSEEEECCTTC
T ss_pred CCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCC--CceeEEEcCCCCceEEEeecCC
Confidence 1112222333333222 22 233457888888875431 123456788886 55888999999999994
Q ss_pred --EeCCCeEEEEeCCCCceeeeee---------ccCCCEEEEEEcCCCCcEEEEE----eCCCcEEEEeccceeeeee
Q psy307 573 --GDADGKCYIWDWKTTKLFKKWK---------AHDGVCISTLWHPHEPSKVVTA----GWDAATAKVQDANIVKIAV 635 (1019)
Q Consensus 573 --gs~DG~I~IWDl~t~~~l~~l~---------~h~~~V~sl~~sp~~~~~l~s~----s~Dg~I~iwwd~~i~ki~~ 635 (1019)
++.|++|+|||+.+++...++. .|...|.+++|+|||...++++ +.||.|++ ||....+...
T Consensus 326 ~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v-~D~~T~k~~~ 402 (426)
T d1hzua2 326 PDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVV-VDDKTLKLKA 402 (426)
T ss_dssp SSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEE-EETTTTEEEE
T ss_pred CCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEE-EECCCCeEEE
Confidence 5668899999999988765542 3556799999999996555664 35777866 5666655543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.82 E-value=1.5e-17 Score=179.12 Aligned_cols=270 Identities=9% Similarity=0.092 Sum_probs=199.1
Q ss_pred eeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCc
Q psy307 301 FLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQ 380 (1019)
Q Consensus 301 ~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~ 380 (1019)
|++...|+.|.+|+... .+.++++... ..+..++|+|++..++++++.++.|++||+ .+.+++..+..|..
T Consensus 5 yV~~~~~~~v~v~D~~t-------~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~-~t~~~~~~~~~~~~ 75 (301)
T d1l0qa2 5 YIANSESDNISVIDVTS-------NKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDT-ATNNVIATVPAGSS 75 (301)
T ss_dssp EEEETTTTEEEEEETTT-------TEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEET-TTTEEEEEEECSSS
T ss_pred EEEECCCCEEEEEECCC-------CeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEEC-CCCceeeeeecccc
Confidence 45667889999998763 3567777654 457899999985555678889999999999 55677888877654
Q ss_pred cEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEE-EEEcCCe
Q psy307 381 AVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFI-SAGYDRY 459 (1019)
Q Consensus 381 ~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~-S~s~Dg~ 459 (1019)
+..+.|++++. .+++++..++.+.+|+. ..+.....+..+ ..+.+++|+|++..++ ++..++.
T Consensus 76 -~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~ 139 (301)
T d1l0qa2 76 -PQGVAVSPDGK-------------QVYVTNMASSTLSVIDT-TSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKT 139 (301)
T ss_dssp -EEEEEECTTSS-------------EEEEEETTTTEEEEEET-TTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTE
T ss_pred -ccccccccccc-------------cccccccccceeeeccc-ccceeeeecccc-ccceEEEeecCCCeeeeeeccccc
Confidence 57888888874 56677788899999998 556666666544 4567889999999865 4556889
Q ss_pred EEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC-CeEEEEEcc
Q psy307 460 LKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD-NKILIFSAL 538 (1019)
Q Consensus 460 I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D-g~I~iwd~~ 538 (1019)
+.+|+..++..+..+.....+.+ +.++|++..+++++.+ +.+.+|+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (301)
T d1l0qa2 140 VSVINTVTKAVINTVSVGRSPKG-------------------------------IAVTPDGTKVYVANFDSMSISVIDTV 188 (301)
T ss_dssp EEEEETTTTEEEEEEECCSSEEE-------------------------------EEECTTSSEEEEEETTTTEEEEEETT
T ss_pred eeeeeccccceeeecccCCCceE-------------------------------EEeeccccceeeeccccccccccccc
Confidence 99999999988877766544444 4556667777777655 566777766
Q ss_pred CcccccceeEEeccccccceEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEE
Q psy307 539 NRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA---DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVT 615 (1019)
Q Consensus 539 ~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~---DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s 615 (1019)
... .......+ ..+..++|+++|..++.++. ++.|++||+.+++.+..+..+. .+.+++|+|+|..++++
T Consensus 189 ~~~---~~~~~~~~---~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~-~~~~va~spdg~~l~va 261 (301)
T d1l0qa2 189 TNS---VIDTVKVE---AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVA 261 (301)
T ss_dssp TTE---EEEEEECS---SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEE
T ss_pred cee---eeeccccc---CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCC-CEEEEEEeCCCCEEEEE
Confidence 542 22333333 44678999999998876543 4689999999999998887654 57999999999655678
Q ss_pred EeCCCcEEEEeccceeeee
Q psy307 616 AGWDAATAKVQDANIVKIA 634 (1019)
Q Consensus 616 ~s~Dg~I~iwwd~~i~ki~ 634 (1019)
++.|++|.+ ||....++.
T Consensus 262 ~~~~~~i~v-~D~~t~~~~ 279 (301)
T d1l0qa2 262 LSFCNTVSV-IDTATNTIT 279 (301)
T ss_dssp ETTTTEEEE-EETTTTEEE
T ss_pred ECCCCeEEE-EECCCCeEE
Confidence 888999866 565554444
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.81 E-value=1.3e-19 Score=209.14 Aligned_cols=308 Identities=7% Similarity=-0.032 Sum_probs=195.4
Q ss_pred eeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcE----EEEEec
Q psy307 301 FLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERR----CVRTYY 376 (1019)
Q Consensus 301 ~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~----~~~~~~ 376 (1019)
+++...|+.|.+|+.. ..+++.++..|. .|..++|+|| |++|++++.||.|++||+.+... .+....
T Consensus 35 ~v~~~d~g~v~v~D~~-------t~~v~~~~~~g~-~~~~v~fSpD-G~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~ 105 (432)
T d1qksa2 35 SVTLRDAGQIALIDGS-------TYEIKTVLDTGY-AVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS 105 (432)
T ss_dssp EEEETTTTEEEEEETT-------TCCEEEEEECSS-CEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEEEEECCS
T ss_pred EEEEcCCCEEEEEECC-------CCcEEEEEeCCC-CeeEEEECCC-CCEEEEEcCCCCEEEEEeeCCCceEEEEEecCC
Confidence 4788899999999876 346788888874 6999999996 88999999999999999865432 223344
Q ss_pred ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccc-----------cccEeEEEEe
Q psy307 377 GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGH-----------RQAVRDICFN 445 (1019)
Q Consensus 377 gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H-----------~~~V~sl~fs 445 (1019)
+|.+.+.+..|+|||+ .++++++.++.|++||. .+++++..+..| ......+.++
T Consensus 106 ~~~~~~~s~~~SpDG~-------------~l~vs~~~~~~v~i~d~-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s 171 (432)
T d1qksa2 106 EARSIETSKMEGWEDK-------------YAIAGAYWPPQYVIMDG-ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS 171 (432)
T ss_dssp EEEEEEECCSTTCTTT-------------EEEEEEEETTEEEEEET-TTCCEEEEEECCEECTTTCCEESCCCEEEEEEC
T ss_pred CCCCeEEecccCCCCC-------------EEEEEcCCCCeEEEEeC-ccccceeeeccCCccccceeccCCCceeEEEEC
Confidence 5666677777777773 45688999999999999 566666665543 3456778999
Q ss_pred cCCCEE-EEEEcCCeEEEEECCCCceE--EEEecCCceEEEEEecCCCeeeeccCCCc----------ee---eeC----
Q psy307 446 NTGTNF-ISAGYDRYLKLWDTESGECI--SRFTSRKVAYCVKFHPDEDKQHLDIPVDM----------KY---IAD---- 505 (1019)
Q Consensus 446 pdg~~l-~S~s~Dg~I~lWDl~t~~~i--~~~~~~~~v~~v~~~p~~~~~~~~~~~~~----------~~---i~~---- 505 (1019)
|+|..+ ++.+.++.|.+||..+++.. ..+.....+..+.|+|++...++...... .. +..
T Consensus 172 ~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~ 251 (432)
T d1qksa2 172 HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT 251 (432)
T ss_dssp SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred CCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccc
Confidence 999875 45566799999999988754 45566778899999999986655111100 00 000
Q ss_pred CCCCcccEEEEcCCCCEEEEEe-cCCeEEEEEccCcccc----cceeEEeccc-----------------------cccc
Q psy307 506 PTMHSMPAVTSSPNNKWLACQS-MDNKILIFSALNRFKL----NRKKTFEGHM-----------------------VAGY 557 (1019)
Q Consensus 506 ~~~~~i~~v~~spdg~~Lasgs-~Dg~I~iwd~~~~~~~----~~~~~l~gh~-----------------------~~~~ 557 (1019)
.+............+...++.. .++.|.+|+....... .....+..+. ....
T Consensus 252 ~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~ 331 (432)
T d1qksa2 252 PHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEI 331 (432)
T ss_dssp BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHH
T ss_pred cccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCe
Confidence 0111111222222233333222 2455555554322100 0001111000 0001
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEe----CCCcEEEEeccceeee
Q psy307 558 ACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAG----WDAATAKVQDANIVKI 633 (1019)
Q Consensus 558 V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s----~Dg~I~iwwd~~i~ki 633 (1019)
..++++ ||++.+++++.|+.+++||+.++..+ ..|...|.+++|+|||...+++.. .+|.|++ ||....++
T Consensus 332 ~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l---~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i-~D~~T~k~ 406 (432)
T d1qksa2 332 SGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI---TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVV-VDDKTLEL 406 (432)
T ss_dssp HTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC---CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEE-EETTTTEE
T ss_pred eeEEEE-EechhhcccccCCceEeccccccccc---CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEE-EECCCceE
Confidence 122343 78888888888888888887655333 356678999999999954445432 3577855 56666665
Q ss_pred eee
Q psy307 634 AVE 636 (1019)
Q Consensus 634 ~~e 636 (1019)
...
T Consensus 407 ~~~ 409 (432)
T d1qksa2 407 KHV 409 (432)
T ss_dssp EEE
T ss_pred EeE
Confidence 443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.78 E-value=6.2e-18 Score=184.84 Aligned_cols=276 Identities=11% Similarity=-0.004 Sum_probs=186.8
Q ss_pred CeeeeCCCCCceeeecCCCCCCccCCccceeeeccC--CCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec
Q psy307 299 RSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGH--TKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY 376 (1019)
Q Consensus 299 r~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH--~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~ 376 (1019)
++++++..|+.|.+|+... .+.++++..+ ...+.+++|+||+..++++++.++.|.+||+ .+++.+..+.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s-------~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~-~t~~~~~~~~ 73 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEK-------MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL-VTGETLGRID 73 (337)
T ss_dssp EEEEEEETTTEEEEEETTT-------TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEET-TTCCEEEEEE
T ss_pred eEEEEEcCCCEEEEEECCC-------CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEEC-CCCcEEEEEe
Confidence 4688999999999998863 3567777653 4568899999974444567788999999999 4566666665
Q ss_pred ccC-----ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEE
Q psy307 377 GHR-----QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNF 451 (1019)
Q Consensus 377 gh~-----~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l 451 (1019)
.+. ..+..++|+|++..++.+..-... ........++.+.+||. ........+.. ...+.+++|+|+|+++
T Consensus 74 ~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~--~~~~~~~~~~~~~~~d~-~~~~~~~~~~~-~~~~~~~~~s~dg~~l 149 (337)
T d1pbyb_ 74 LSTPEERVKSLFGAALSPDGKTLAIYESPVRL--ELTHFEVQPTRVALYDA-ETLSRRKAFEA-PRQITMLAWARDGSKL 149 (337)
T ss_dssp CCBTTEEEECTTCEEECTTSSEEEEEEEEEEE--CSSCEEECCCEEEEEET-TTTEEEEEEEC-CSSCCCEEECTTSSCE
T ss_pred cCCCcccccceeeEEEcCCCcEEEEeecCCcc--eeeeccccccceeeccc-cCCeEEEeccc-cCCceEEEEcCCCCEE
Confidence 543 345578899988543322110000 01112335788999998 55566666654 4567889999999999
Q ss_pred EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeee----------------------------------ccC
Q psy307 452 ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL----------------------------------DIP 497 (1019)
Q Consensus 452 ~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~----------------------------------~~~ 497 (1019)
++++. .+.+||..+++....+..+.......+.|++..... +..
T Consensus 150 ~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (337)
T d1pbyb_ 150 YGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE 227 (337)
T ss_dssp EEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT
T ss_pred EEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcC
Confidence 98864 477899999998888765433322223332221110 000
Q ss_pred CCc--eeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC
Q psy307 498 VDM--KYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA 575 (1019)
Q Consensus 498 ~~~--~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~ 575 (1019)
... .....++...+..+.++|++.+++++ ++.|++||+.++... ..+.. . ..+.+++|+|||++|++|+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~---~~~~~-~--~~~~~~~~s~dG~~l~v~~~ 299 (337)
T d1pbyb_ 228 TGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASI---KRVPL-P--HSYYSVNVSTDGSTVWLGGA 299 (337)
T ss_dssp TCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEE---EEEEC-S--SCCCEEEECTTSCEEEEESB
T ss_pred CCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEE---EEEcC-C--CCEEEEEECCCCCEEEEEeC
Confidence 000 01112234445667888899888765 589999999987433 33322 1 45788999999999999999
Q ss_pred CCeEEEEeCCCCceeeeeecc
Q psy307 576 DGKCYIWDWKTTKLFKKWKAH 596 (1019)
Q Consensus 576 DG~I~IWDl~t~~~l~~l~~h 596 (1019)
||.|+|||..+++.+.+++..
T Consensus 300 ~~~i~v~D~~t~~~v~~i~~~ 320 (337)
T d1pbyb_ 300 LGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp SSEEEEEETTTCCEEEEEECG
T ss_pred CCcEEEEECCCCcEEEEEECC
Confidence 999999999999999988753
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.77 E-value=9.2e-18 Score=192.71 Aligned_cols=298 Identities=10% Similarity=-0.002 Sum_probs=210.8
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.++++|+.+++++.|+.+++|+...... .....+....+|.+.+.+++|+||+..+++++..++.+++||. ....++
T Consensus 68 afSPDGk~l~~~~~d~~v~vwd~~t~~~--~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~-~~~~~~ 144 (426)
T d1hzua2 68 RMSASGRYLLVIGRDARIDMIDLWAKEP--TKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG-ETLEPK 144 (426)
T ss_dssp EECTTSCEEEEEETTSEEEEEETTSSSC--EEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEET-TTCCEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEccCCce--eEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcC-Ccccee
Confidence 5789999999999999999998864331 1112344556788888999999985555677779999999999 556778
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
..+.+|...+..+.+.+++. ...+..+++...++.+....+.+.+++.............+...+..+.|+|++++++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~--~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 222 (426)
T d1hzua2 145 QIVSTRGMTVDTQTYHPEPR--VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFM 222 (426)
T ss_dssp EEEECCEECSSSCCEESCCC--EEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEE
T ss_pred EEeeccCCCccceeecCCCc--eeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEE
Confidence 88888888887777877764 2334555666566666666677777777555555555667888899999999999977
Q ss_pred EEEc-CCeEEEEECCCCceEEEEecCCc----------------eEEEEEecCCCeeeeccC--------CCceeeeCCC
Q psy307 453 SAGY-DRYLKLWDTESGECISRFTSRKV----------------AYCVKFHPDEDKQHLDIP--------VDMKYIADPT 507 (1019)
Q Consensus 453 S~s~-Dg~I~lWDl~t~~~i~~~~~~~~----------------v~~v~~~p~~~~~~~~~~--------~~~~~i~~~~ 507 (1019)
++.. +..+.+||..+++.+........ +......+++.....+.. .........+
T Consensus 223 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~ 302 (426)
T d1hzua2 223 TAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ 302 (426)
T ss_dssp EEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred eeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecC
Confidence 7764 56799999999998877754321 122222233322222111 1222334556
Q ss_pred CCcccEEEEcCCCCEEEE-------EecCCeEEEEEccCcccccceeE------EeccccccceEEEEEcCCCCEEEE-E
Q psy307 508 MHSMPAVTSSPNNKWLAC-------QSMDNKILIFSALNRFKLNRKKT------FEGHMVAGYACSLDFSPDMSYLIS-G 573 (1019)
Q Consensus 508 ~~~i~~v~~spdg~~Las-------gs~Dg~I~iwd~~~~~~~~~~~~------l~gh~~~~~V~~v~fspdg~~Las-g 573 (1019)
...+..++++|++++|++ ++.+++|+|||+.++.....+.. +..+ ...+..++|||||++++. +
T Consensus 303 ~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~--~~rv~~~~fSpDGk~i~vs~ 380 (426)
T d1hzua2 303 GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG--AKRVVQPEYNKRGDEVWFSV 380 (426)
T ss_dssp SSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS--CCCEEEEEECSSSSEEEEEE
T ss_pred CCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCC--CccEEEEEECCCCCEEEEEE
Confidence 778899999999999995 45688999999987744322211 1122 255889999999997743 2
Q ss_pred ----eCCCeEEEEeCCCCceeeeeeccC
Q psy307 574 ----DADGKCYIWDWKTTKLFKKWKAHD 597 (1019)
Q Consensus 574 ----s~DG~I~IWDl~t~~~l~~l~~h~ 597 (1019)
+.+|.|+|||.+|+++...++++.
T Consensus 381 ~~~~~~~~~i~v~D~~T~k~~~~i~~~~ 408 (426)
T d1hzua2 381 WNGKNDSSALVVVDDKTLKLKAVVKDPR 408 (426)
T ss_dssp CCCTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred ecCCCCCCeEEEEECCCCeEEEEECCCC
Confidence 357899999999999999988765
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.77 E-value=1.1e-17 Score=192.66 Aligned_cols=237 Identities=14% Similarity=0.093 Sum_probs=169.9
Q ss_pred cEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe-
Q psy307 349 HLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR- 427 (1019)
Q Consensus 349 ~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~- 427 (1019)
-++++.+.||+|.|||. ..++++..+..| ..+..++|+||| +++++++.||.|++||+.+...
T Consensus 33 ~~~v~~~d~g~v~v~D~-~t~~v~~~~~~g-~~~~~v~fSpDG--------------~~l~~~s~dg~v~~~d~~t~~~~ 96 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDG-STYEIKTVLDTG-YAVHISRLSASG--------------RYLFVIGRDGKVNMIDLWMKEPT 96 (432)
T ss_dssp EEEEEETTTTEEEEEET-TTCCEEEEEECS-SCEEEEEECTTS--------------CEEEEEETTSEEEEEETTSSSCC
T ss_pred EEEEEEcCCCEEEEEEC-CCCcEEEEEeCC-CCeeEEEECCCC--------------CEEEEEcCCCCEEEEEeeCCCce
Confidence 34688899999999999 667888888877 469999999999 6899999999999999965442
Q ss_pred E---EEEEccccccEeEEEEecCCCEE-EEEEcCCeEEEEECCCCceEEEEecCCc-eEEEEEecCCCeeeeccCCCcee
Q psy307 428 C---VRTYYGHRQAVRDICFNNTGTNF-ISAGYDRYLKLWDTESGECISRFTSRKV-AYCVKFHPDEDKQHLDIPVDMKY 502 (1019)
Q Consensus 428 ~---~~~l~~H~~~V~sl~fspdg~~l-~S~s~Dg~I~lWDl~t~~~i~~~~~~~~-v~~v~~~p~~~~~~~~~~~~~~~ 502 (1019)
. +....+|.+.+.+..|+|||+++ ++++.+++|++||..+++++..+..+.. +....+.++
T Consensus 97 ~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~-------------- 162 (432)
T d1qksa2 97 TVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE-------------- 162 (432)
T ss_dssp EEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC--------------
T ss_pred EEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCC--------------
Confidence 2 23345677888888899999985 6788899999999999999988765421 122223332
Q ss_pred eeCCCCCcccEEEEcCCCCEE-EEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC-CCeEE
Q psy307 503 IADPTMHSMPAVTSSPNNKWL-ACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA-DGKCY 580 (1019)
Q Consensus 503 i~~~~~~~i~~v~~spdg~~L-asgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~-DG~I~ 580 (1019)
.....+.++|+|..+ ++...++.|.+|+..+..... ...+.. +..+..++|+|||+++++++. ++.+.
T Consensus 163 ------~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~-~~~i~~---g~~~~~~~~spdg~~~~va~~~~~~v~ 232 (432)
T d1qksa2 163 ------PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK-TTEISA---ERFLHDGGLDGSHRYFITAANARNKLV 232 (432)
T ss_dssp ------CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE-EEEEEC---CSSEEEEEECTTSCEEEEEEGGGTEEE
T ss_pred ------CceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcce-EEEEcc---cCccccceECCCCCEEEEeccccceEE
Confidence 234567889998876 455677999999987653221 122221 245788999999998877765 45899
Q ss_pred EEeCCCCceeeeeec-----cCCCEEEEEEcCCCCcEEEEEe-CCCcEEEEe
Q psy307 581 IWDWKTTKLFKKWKA-----HDGVCISTLWHPHEPSKVVTAG-WDAATAKVQ 626 (1019)
Q Consensus 581 IWDl~t~~~l~~l~~-----h~~~V~sl~~sp~~~~~l~s~s-~Dg~I~iww 626 (1019)
++|..+++.+..+.. |........+...+ ...++.. .|+.|..|.
T Consensus 233 v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g-~~~~~~~lg~~~v~~~~ 283 (432)
T d1qksa2 233 VIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG-PVWATSHMGDDSVALIG 283 (432)
T ss_dssp EEETTTTEEEEEEECSSSSBCCTTCEEEEETTTE-EEEEEEBSSSSEEEEEE
T ss_pred EeecccceEEEEeccCccccccCcccceecCCCC-ceecccccCCceEEecc
Confidence 999999888776642 34444555555444 3333333 477776653
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.75 E-value=4.7e-17 Score=178.43 Aligned_cols=286 Identities=9% Similarity=-0.032 Sum_probs=193.0
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeec-cCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWE-GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC 371 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~-gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~ 371 (1019)
+++..|+++++++.|+.|.+|+... .+.+++++ .|...+.+++|+||+..++++++.++.|.+||+. .++.
T Consensus 3 a~~~~~~~l~~~~~~~~v~v~D~~t-------~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~-t~~~ 74 (346)
T d1jmxb_ 3 ALKAGHEYMIVTNYPNNLHVVDVAS-------DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD-TCKN 74 (346)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTT-------TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT-TTEE
T ss_pred cCCCCCcEEEEEcCCCEEEEEECCC-------CCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCc-cCee
Confidence 5678899999999999999998873 46678887 4667889999999855556777889999999994 4555
Q ss_pred EEEeccc------CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcc--ccccEeEEE
Q psy307 372 VRTYYGH------RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG--HRQAVRDIC 443 (1019)
Q Consensus 372 ~~~~~gh------~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~--H~~~V~sl~ 443 (1019)
+..+... ...+..++|+|||..+......... ........++.+.+|+..... ....+.. ....+..+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~--~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 151 (346)
T d1jmxb_ 75 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQR--LNDHYVVKPPRLEVFSTADGL-EAKPVRTFPMPRQVYLMR 151 (346)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEE--CSSCEEECCCEEEEEEGGGGG-GBCCSEEEECCSSCCCEE
T ss_pred eeeecccccccccCCceEEEEEecCCCEEEEEecCCcc--eeeeeccCcceEEEEecccce-eeeEEEeeeccCceEEEE
Confidence 5554432 2345678899988543222111000 011123467889999984332 2221211 223455567
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeee-----------------------------
Q psy307 444 FNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL----------------------------- 494 (1019)
Q Consensus 444 fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~----------------------------- 494 (1019)
+++++..+++ ++.+.+||+.+++.+..+..+..+..+.++|++.....
T Consensus 152 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (346)
T d1jmxb_ 152 AADDGSLYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 228 (346)
T ss_dssp ECTTSCEEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred ecCCCEEEEe---CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccC
Confidence 7777765553 35689999999999998877666666666666543322
Q ss_pred -------ccCCC--ceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcC
Q psy307 495 -------DIPVD--MKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP 565 (1019)
Q Consensus 495 -------~~~~~--~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp 565 (1019)
+.... ......++...+..+.+++++.+++... ++.|.+||..++.. +..+... ..+.+++|||
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~---~~~~~~~---~~~~~va~s~ 301 (346)
T d1jmxb_ 229 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKL---IKAANLD---HTYYCVAFDK 301 (346)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEE---EEEEECS---SCCCEEEECS
T ss_pred CceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcE---EEEEcCC---CCEEEEEEcC
Confidence 00000 1112223445566788888888887765 56899999987733 2333321 3478999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCC
Q psy307 566 DMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGV 599 (1019)
Q Consensus 566 dg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~ 599 (1019)
||++|++++.||.|+|||+.+++.+.+++.+.+.
T Consensus 302 DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~ 335 (346)
T d1jmxb_ 302 KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGD 335 (346)
T ss_dssp SSSCEEEESBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred CCCEEEEEeCCCcEEEEECccCCEEEEEECCCCC
Confidence 9999999999999999999999999999866543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.74 E-value=1.2e-16 Score=174.44 Aligned_cols=261 Identities=9% Similarity=-0.020 Sum_probs=183.3
Q ss_pred cEEEEeeCCCeEEEEecCCCcEEEEEecc--cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC
Q psy307 349 HLLLSCSMDCRVKLWEVYKERRCVRTYYG--HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH 426 (1019)
Q Consensus 349 ~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g--h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~ 426 (1019)
.++++++.|++|.|||+ ...+++..+.. +...+.+++|+|||. .++++++.++.|.+||+ .++
T Consensus 2 ~~~vt~~~d~~v~v~D~-~s~~~~~~i~~~~~~~~~~~i~~spDg~-------------~l~v~~~~~~~v~v~D~-~t~ 66 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDT-EKMAVDKVITIADAGPTPMVPMVAPGGR-------------IAYATVNKSESLVKIDL-VTG 66 (337)
T ss_dssp EEEEEEETTTEEEEEET-TTTEEEEEEECTTCTTCCCCEEECTTSS-------------EEEEEETTTTEEEEEET-TTC
T ss_pred eEEEEEcCCCEEEEEEC-CCCeEEEEEECCCCCCCccEEEECCCCC-------------EEEEEECCCCeEEEEEC-CCC
Confidence 58999999999999999 55677877754 345678999999994 23467788999999999 556
Q ss_pred eEEEEEcccc-----ccEeEEEEecCCCEEEEEEc------------CCeEEEEECCCCceEEEEecCCceEEEEEecCC
Q psy307 427 RCVRTYYGHR-----QAVRDICFNNTGTNFISAGY------------DRYLKLWDTESGECISRFTSRKVAYCVKFHPDE 489 (1019)
Q Consensus 427 ~~~~~l~~H~-----~~V~sl~fspdg~~l~S~s~------------Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~ 489 (1019)
+.+..+..+. ..+..++|+|+++++++++. +..+.+||..+++.+..+.....+.+++++|++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg 146 (337)
T d1pbyb_ 67 ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDG 146 (337)
T ss_dssp CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTS
T ss_pred cEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCC
Confidence 6666665543 34567899999999887764 578999999999999999988889999999999
Q ss_pred CeeeeccCCCceeee---------CCCCCcccEEEEcCCC------------------------CEEEEEecCCeEEEEE
Q psy307 490 DKQHLDIPVDMKYIA---------DPTMHSMPAVTSSPNN------------------------KWLACQSMDNKILIFS 536 (1019)
Q Consensus 490 ~~~~~~~~~~~~~i~---------~~~~~~i~~v~~spdg------------------------~~Lasgs~Dg~I~iwd 536 (1019)
......... ...+. ...........++|++ ..+..++.++.+.+|+
T Consensus 147 ~~l~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (337)
T d1pbyb_ 147 SKLYGLGRD-LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225 (337)
T ss_dssp SCEEEESSS-EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred CEEEEEcCC-cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEE
Confidence 876652211 00000 0000000111111211 1111223345688888
Q ss_pred ccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEE
Q psy307 537 ALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 537 ~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~ 616 (1019)
...+... ...+..+. ..+..+.++|++.+++++ ++.|++||+.+++.+..+. +...+.+++|+|+| .+|+++
T Consensus 226 ~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG-~~l~v~ 297 (337)
T d1pbyb_ 226 LETGEMA--MREVRIMD--VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDG-STVWLG 297 (337)
T ss_dssp TTTCCEE--EEEEEECS--SCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTS-CEEEEE
T ss_pred cCCCcEE--EEEecCCC--cceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCC-CEEEEE
Confidence 8765322 22233333 557788999999998866 4889999999999998886 45568899999999 588899
Q ss_pred eCCCcEEEEeccceeeee
Q psy307 617 GWDAATAKVQDANIVKIA 634 (1019)
Q Consensus 617 s~Dg~I~iwwd~~i~ki~ 634 (1019)
+.||+|.+ ||....+..
T Consensus 298 ~~~~~i~v-~D~~t~~~v 314 (337)
T d1pbyb_ 298 GALGDLAA-YDAETLEKK 314 (337)
T ss_dssp SBSSEEEE-EETTTCCEE
T ss_pred eCCCcEEE-EECCCCcEE
Confidence 99999865 555544433
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.71 E-value=9.7e-15 Score=156.56 Aligned_cols=241 Identities=10% Similarity=0.107 Sum_probs=181.2
Q ss_pred CCCCCCCee-eeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE
Q psy307 293 PTDYQGRSF-LHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC 371 (1019)
Q Consensus 293 ~~~~~gr~~-~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~ 371 (1019)
.++++|+++ +++..++.|.+|+... .+.++++..|. .+..++|++++..+++++..++.+.+|+. ...+.
T Consensus 38 a~spdG~~l~v~~~~~~~i~v~d~~t-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 108 (301)
T d1l0qa2 38 VISPDGTKVYVANAHSNDVSIIDTAT-------NNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDT-TSNTV 108 (301)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEETTT-------TEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEET-TTTEE
T ss_pred EEeCCCCEEEEEECCCCEEEEEECCC-------Cceeeeeeccc-cccccccccccccccccccccceeeeccc-cccee
Confidence 467899976 5777889999998763 35677787776 46889999987777888889999999999 45566
Q ss_pred EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEE
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNF 451 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l 451 (1019)
...+..+ ..+.++.|+|++. .+++++..++.+.+|+. ........+..+ ..+.++.++|++..+
T Consensus 109 ~~~~~~~-~~~~~~~~~~dg~-------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 172 (301)
T d1l0qa2 109 AGTVKTG-KSPLGLALSPDGK-------------KLYVTNNGDKTVSVINT-VTKAVINTVSVG-RSPKGIAVTPDGTKV 172 (301)
T ss_dssp EEEEECS-SSEEEEEECTTSS-------------EEEEEETTTTEEEEEET-TTTEEEEEEECC-SSEEEEEECTTSSEE
T ss_pred eeecccc-ccceEEEeecCCC-------------eeeeeeccccceeeeec-cccceeeecccC-CCceEEEeeccccce
Confidence 6666544 4567888888884 45677778899999998 555555555544 457888999999998
Q ss_pred EEEEcC-CeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEe---
Q psy307 452 ISAGYD-RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQS--- 527 (1019)
Q Consensus 452 ~S~s~D-g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs--- 527 (1019)
++++.+ +.+.+|+.........+.....+.. +++++++..+++++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~g~~~~v~~~~~ 221 (301)
T d1l0qa2 173 YVANFDSMSISVIDTVTNSVIDTVKVEAAPSG-------------------------------IAVNPEGTKAYVTNVDK 221 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSSEEEE-------------------------------EEECTTSSEEEEEEECS
T ss_pred eeecccccccccccccceeeeecccccCCcce-------------------------------eeccccccccccccccc
Confidence 888765 6778888887777666665544443 45566677666554
Q ss_pred cCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCceeeeeec
Q psy307 528 MDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYL-ISGDADGKCYIWDWKTTKLFKKWKA 595 (1019)
Q Consensus 528 ~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~L-asgs~DG~I~IWDl~t~~~l~~l~~ 595 (1019)
.++.|.+||+.++. ....+..+ ..+.+++|+|||++| ++++.|++|++||+.+++++.++..
T Consensus 222 ~~~~v~v~D~~t~~---~~~~~~~~---~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 222 YFNTVSMIDTGTNK---ITARIPVG---PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp SCCEEEEEETTTTE---EEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred eeeeeeeeecCCCe---EEEEEcCC---CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence 34689999998763 23444433 457899999999987 5777899999999999999988864
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.70 E-value=5.1e-16 Score=169.94 Aligned_cols=271 Identities=10% Similarity=0.031 Sum_probs=179.3
Q ss_pred EEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec-ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEE
Q psy307 341 IRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY-GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKL 419 (1019)
Q Consensus 341 i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~-gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~I 419 (1019)
++|++ ++++|++++.|++|.|||+ ..+++++++. .|...+.+++|+|||. .++++++.++.|.+
T Consensus 2 ~a~~~-~~~~l~~~~~~~~v~v~D~-~t~~~~~t~~~~~~~~p~~l~~spDG~-------------~l~v~~~~~~~v~~ 66 (346)
T d1jmxb_ 2 PALKA-GHEYMIVTNYPNNLHVVDV-ASDTVYKSCVMPDKFGPGTAMMAPDNR-------------TAYVLNNHYGDIYG 66 (346)
T ss_dssp CCCCT-TCEEEEEEETTTEEEEEET-TTTEEEEEEECSSCCSSCEEEECTTSS-------------EEEEEETTTTEEEE
T ss_pred ccCCC-CCcEEEEEcCCCEEEEEEC-CCCCEEEEEEcCCCCCcceEEECCCCC-------------EEEEEECCCCcEEE
Confidence 46778 5899999999999999999 5668888876 4566788999999984 34567778999999
Q ss_pred EEccCCCeEEEEEccc------cccEeEEEEecCCCEEEEEE------------cCCeEEEEECCCCceEEE---EecCC
Q psy307 420 WEVYKEHRCVRTYYGH------RQAVRDICFNNTGTNFISAG------------YDRYLKLWDTESGECISR---FTSRK 478 (1019)
Q Consensus 420 WDl~~~~~~~~~l~~H------~~~V~sl~fspdg~~l~S~s------------~Dg~I~lWDl~t~~~i~~---~~~~~ 478 (1019)
||+ ..++.+..+... ...+..++|+|||+++++++ .++.+.+||..+++.... .....
T Consensus 67 ~d~-~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 145 (346)
T d1jmxb_ 67 IDL-DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR 145 (346)
T ss_dssp EET-TTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS
T ss_pred EeC-ccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccC
Confidence 999 455555554322 23467889999999987765 467899999888764432 23334
Q ss_pred ceEEEEEecCCCeeeec-------cCCCceeeeCCCCCcccEEEEcCCCCE--------------------------EEE
Q psy307 479 VAYCVKFHPDEDKQHLD-------IPVDMKYIADPTMHSMPAVTSSPNNKW--------------------------LAC 525 (1019)
Q Consensus 479 ~v~~v~~~p~~~~~~~~-------~~~~~~~i~~~~~~~i~~v~~spdg~~--------------------------Las 525 (1019)
.+..+.+++++...... ..................+.++|++.. +++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (346)
T d1jmxb_ 146 QVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 225 (346)
T ss_dssp SCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred ceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEee
Confidence 44555555555433221 110000000011111222333343332 233
Q ss_pred EecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEE
Q psy307 526 QSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLW 605 (1019)
Q Consensus 526 gs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~ 605 (1019)
+..++.+.+|+..++... ......+. ..+..+.+++++.+++.+.. +.|.+||+.+++.+..+. +...+.+++|
T Consensus 226 ~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~ 299 (346)
T d1jmxb_ 226 ADLLYGYLSVDLKTGKTH--TQEFADLT--ELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAF 299 (346)
T ss_dssp CEEEEEEEEEETTTCCEE--EEEEEECS--SCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEE
T ss_pred ccCCceEEEEECCCCceE--EEEeeccc--ceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEE
Confidence 344556777777665322 22333443 55778899999888887764 579999999999988886 3456889999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeccceeeeee
Q psy307 606 HPHEPSKVVTAGWDAATAKVQDANIVKIAV 635 (1019)
Q Consensus 606 sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~ 635 (1019)
+||| ++|++++.||.|.+ ||....+...
T Consensus 300 s~DG-~~l~v~~~d~~v~v-~D~~t~~~i~ 327 (346)
T d1jmxb_ 300 DKKG-DKLYLGGTFNDLAV-FNPDTLEKVK 327 (346)
T ss_dssp CSSS-SCEEEESBSSEEEE-EETTTTEEEE
T ss_pred cCCC-CEEEEEeCCCcEEE-EECccCCEEE
Confidence 9998 68899999999855 6766655543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=3e-14 Score=155.29 Aligned_cols=268 Identities=10% Similarity=0.106 Sum_probs=175.1
Q ss_pred eeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEE-EEeeCCCeEEEEecCCCcEEE--EEec
Q psy307 300 SFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLL-LSCSMDCRVKLWEVYKERRCV--RTYY 376 (1019)
Q Consensus 300 ~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lL-aSgs~Dg~I~IWdl~~~~~~~--~~~~ 376 (1019)
.+++++.|+.|++|+...... .+.+++ ..|.+.|.+|+|+|| |++| +++..|+.|++|++....... ....
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~----l~~~~~-~~~~~~v~~la~spD-G~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~ 79 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGA----LTLTQV-VDVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALTFAAES 79 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSC----EEEEEE-EECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred EEEECCCCCcEEEEEEcCCCC----eEEEEE-EcCCCCEeEEEEeCC-CCEEEEEECCCCeEEEEEEeCCCCcEEEeeec
Confidence 467888999999998763221 122233 358889999999997 5555 556669999999996443222 1222
Q ss_pred ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe-CCCcEEEEEccCCCe-EEEEEccccccEeEEEEecCCCEEEEE
Q psy307 377 GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS-MDCRVKLWEVYKEHR-CVRTYYGHRQAVRDICFNNTGTNFISA 454 (1019)
Q Consensus 377 gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs-~Dg~I~IWDl~~~~~-~~~~l~~H~~~V~sl~fspdg~~l~S~ 454 (1019)
.+...+..++|+||| ++|++++ .++.|.+|+...... .......+...+.++.++|++++++++
T Consensus 80 ~~~~~p~~l~~spDg--------------~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~ 145 (333)
T d1ri6a_ 80 ALPGSLTHISTDHQG--------------QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVP 145 (333)
T ss_dssp ECSSCCSEEEECTTS--------------SEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEE
T ss_pred ccCCCceEEEEcCCC--------------CEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecc
Confidence 344557789999998 5666666 577899999854432 233445677788899999999998887
Q ss_pred Ec-CCeEEEEECCCCceEEE-------EecCCceEEEEEecCCCeeeeccCCC-ce----------------eee-----
Q psy307 455 GY-DRYLKLWDTESGECISR-------FTSRKVAYCVKFHPDEDKQHLDIPVD-MK----------------YIA----- 504 (1019)
Q Consensus 455 s~-Dg~I~lWDl~t~~~i~~-------~~~~~~v~~v~~~p~~~~~~~~~~~~-~~----------------~i~----- 504 (1019)
+. +..|.+|+..+...... ......+..+.|++++.......... .. .+.
T Consensus 146 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 225 (333)
T d1ri6a_ 146 ALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN 225 (333)
T ss_dssp EGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT
T ss_pred ccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecC
Confidence 75 45799999876543321 12345667899999887654411110 00 000
Q ss_pred CCCCCcccEEEEcCCCCEEEEE-ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe-CCCeEEEE
Q psy307 505 DPTMHSMPAVTSSPNNKWLACQ-SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD-ADGKCYIW 582 (1019)
Q Consensus 505 ~~~~~~i~~v~~spdg~~Lasg-s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs-~DG~I~IW 582 (1019)
.........+++++++++++.. ..++.+.+|++............... ...+.+++|+|||++|++++ .++.|.||
T Consensus 226 ~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~a~spDGk~l~va~~~~~~v~v~ 303 (333)
T d1ri6a_ 226 FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT--ETQPRGFNVDHSGKYLIAAGQKSHHISVY 303 (333)
T ss_dssp CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC--SSSCCCEEECTTSSEEEEECTTTCEEEEE
T ss_pred CCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCC--CCCeeEEEEeCCCCEEEEEECCCCeEEEE
Confidence 0112234567899999876655 56789999998765333222222222 24567899999999987765 46889999
Q ss_pred e--CCCCce
Q psy307 583 D--WKTTKL 589 (1019)
Q Consensus 583 D--l~t~~~ 589 (1019)
+ ..+|++
T Consensus 304 ~id~~tG~l 312 (333)
T d1ri6a_ 304 EIVGEQGLL 312 (333)
T ss_dssp EEETTTTEE
T ss_pred EEECCCCcE
Confidence 4 566654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=9.4e-14 Score=151.24 Aligned_cols=262 Identities=8% Similarity=0.109 Sum_probs=172.4
Q ss_pred EEEEeeCCCeEEEEecCCCcE-EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEE-EEEeCCCcEEEEEccCCCe
Q psy307 350 LLLSCSMDCRVKLWEVYKERR-CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLL-LSCSMDCRVKLWEVYKEHR 427 (1019)
Q Consensus 350 lLaSgs~Dg~I~IWdl~~~~~-~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L-~sgs~Dg~I~IWDl~~~~~ 427 (1019)
.+++++.|++|++|++...+. .+.....|.+.|..|+|+||| ++| +++..|+.|++|++.....
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG--------------~~L~v~~~~d~~i~~~~i~~~~~ 71 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDK--------------RYLYVGVRPEFRVLAYRIAPDDG 71 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTS--------------SEEEEEETTTTEEEEEEECTTTC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCC--------------CEEEEEECCCCeEEEEEEeCCCC
Confidence 467788999999999964432 223334688899999999999 455 4555689999999965443
Q ss_pred EEE--EEccccccEeEEEEecCCCEEEEEEc-CCeEEEEECCCCceEEEE---ecCCceEEEEEecCCCeeeeccCCC--
Q psy307 428 CVR--TYYGHRQAVRDICFNNTGTNFISAGY-DRYLKLWDTESGECISRF---TSRKVAYCVKFHPDEDKQHLDIPVD-- 499 (1019)
Q Consensus 428 ~~~--~l~~H~~~V~sl~fspdg~~l~S~s~-Dg~I~lWDl~t~~~i~~~---~~~~~v~~v~~~p~~~~~~~~~~~~-- 499 (1019)
... ....+...+..++|+|||+++++++. ++.|.+|+.......... .....+.++.++|++..........
T Consensus 72 ~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~ 151 (333)
T d1ri6a_ 72 ALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDR 151 (333)
T ss_dssp CEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTE
T ss_pred cEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccce
Confidence 222 22334556788999999999998886 678999998776554433 3445678889999988655411110
Q ss_pred ----------------ceeeeCCCCCcccEEEEcCCCCEEEEEe-cCCeEEEEEccCccc-ccceeEEe----ccccccc
Q psy307 500 ----------------MKYIADPTMHSMPAVTSSPNNKWLACQS-MDNKILIFSALNRFK-LNRKKTFE----GHMVAGY 557 (1019)
Q Consensus 500 ----------------~~~i~~~~~~~i~~v~~spdg~~Lasgs-~Dg~I~iwd~~~~~~-~~~~~~l~----gh~~~~~ 557 (1019)
..............+++++++.+++... ..+...+|+...... ........ .......
T Consensus 152 i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (333)
T d1ri6a_ 152 ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW 231 (333)
T ss_dssp EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC
T ss_pred eeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCcccc
Confidence 0111222334456799999998887655 556788887653321 11111111 1122345
Q ss_pred eEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeeeee---ccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 558 ACSLDFSPDMSYLISG-DADGKCYIWDWKTTKLFKKWK---AHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 558 V~~v~fspdg~~Lasg-s~DG~I~IWDl~t~~~l~~l~---~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
...+++++|+++++.. ..++.+.+|++........+. .+.+.+.+++|+|+|..++++++.++.|.+|
T Consensus 232 ~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~ 303 (333)
T d1ri6a_ 232 AADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVY 303 (333)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEE
T ss_pred ceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEE
Confidence 6778999999976654 567899999987654433332 3345678899999995444555566788766
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.60 E-value=5.7e-13 Score=148.06 Aligned_cols=287 Identities=8% Similarity=-0.120 Sum_probs=177.6
Q ss_pred CCCCCCCeeeeCC-----CCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEee----------CC
Q psy307 293 PTDYQGRSFLHPP-----HDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCS----------MD 357 (1019)
Q Consensus 293 ~~~~~gr~~~~~~-----~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs----------~D 357 (1019)
+..++|++++... .++.+.+|+.. ..+.+.++.++... .++|+|| |.+|++++ .+
T Consensus 27 a~spdg~~~~~~~~~~~~~~~~v~v~D~~-------tg~~~~~~~~~~~~--~~a~SpD-G~~l~va~~~~~~~~~~~~~ 96 (373)
T d2madh_ 27 APGADGRRSYINLPAHHSAIIQQWVLDAG-------SGSILGHVNGGFLP--NPVAAHS-GSEFALASTSFSRIAKGKRT 96 (373)
T ss_pred ccCCCCCEEEEEcccccCCCceEEEEECC-------CCCEEEEEeCCCCc--cEEEcCC-CCEEEEEeecCCcccccccc
Confidence 4678888875432 23446666543 34667778777654 7999997 66666654 46
Q ss_pred CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEE-EEeCCCcEEEEEccCCCeEEEEEcccc
Q psy307 358 CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLL-SCSMDCRVKLWEVYKEHRCVRTYYGHR 436 (1019)
Q Consensus 358 g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~-sgs~Dg~I~IWDl~~~~~~~~~l~~H~ 436 (1019)
+.|.+||. ...+++..+..+......+...|.+ +.|++++..+++ ....++.+.+|+.. ..+.. .+.
T Consensus 97 ~~v~v~D~-~t~~~~~~~~~~~~~~~~~~~~~~~------~~~s~dg~~~~v~~~~~~~~~~~~~~~-~~~~~----~~~ 164 (373)
T d2madh_ 97 DYVEVFDP-VTFLPIADIELPDAPRFDVGPYSWM------NANTPNNADLLFFQFAAGPAVGLVVQG-GSSDD----QLL 164 (373)
T ss_pred eEEEEEEC-CCCcEEEEEecCCcceeEeccCCCc------EEEEeCCCcEEEEEEcCCCceEEeecc-CCeEE----EEe
Confidence 88999999 5566777777666655444333322 344444444333 33556788899873 33322 333
Q ss_pred ccEeEEEEecCCCE-EEEEEcCCeEEEEECCCCceEEEEecC-----Cc--eEEEEEecCCCe---------eeeccCCC
Q psy307 437 QAVRDICFNNTGTN-FISAGYDRYLKLWDTESGECISRFTSR-----KV--AYCVKFHPDEDK---------QHLDIPVD 499 (1019)
Q Consensus 437 ~~V~sl~fspdg~~-l~S~s~Dg~I~lWDl~t~~~i~~~~~~-----~~--v~~v~~~p~~~~---------~~~~~~~~ 499 (1019)
....++.++|+|+. +++.+.|+++.+||...+......... .. .....+.+++.. ..+.....
T Consensus 165 ~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 244 (373)
T d2madh_ 165 SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA 244 (373)
T ss_pred ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCC
Confidence 44667899999876 578889999999999988776654321 11 112222222211 11111111
Q ss_pred cee-------------eeCCCCCcccEEEEcCCCCEE----------EEEecCCeEEEEEccCcccccceeEEecccccc
Q psy307 500 MKY-------------IADPTMHSMPAVTSSPNNKWL----------ACQSMDNKILIFSALNRFKLNRKKTFEGHMVAG 556 (1019)
Q Consensus 500 ~~~-------------i~~~~~~~i~~v~~spdg~~L----------asgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~ 556 (1019)
... ...........+++++++..+ +....++.|.+||..++.. +..+... .
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~---~~~~~~~---~ 318 (373)
T d2madh_ 245 GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT---SSQISLG---H 318 (373)
T ss_pred eEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcE---EEEecCC---C
Confidence 000 000011122345566665544 3455677899999988743 3333322 4
Q ss_pred ceEEEEEcCCCCE--EEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcC
Q psy307 557 YACSLDFSPDMSY--LISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHP 607 (1019)
Q Consensus 557 ~V~~v~fspdg~~--Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp 607 (1019)
.+..++|+|||+. +++++.|++|+|||+.+++.++++..+......++..+
T Consensus 319 ~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~ 371 (373)
T d2madh_ 319 DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMN 371 (373)
T ss_pred CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEec
Confidence 5789999999984 57889999999999999999999998877667777654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.57 E-value=1.9e-13 Score=150.62 Aligned_cols=288 Identities=9% Similarity=-0.046 Sum_probs=188.8
Q ss_pred eEEEEEcCCCCcEEEEe-----eCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe
Q psy307 338 ISAIRWFPKSAHLLLSC-----SMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS 412 (1019)
Q Consensus 338 V~~i~fspd~g~lLaSg-----s~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs 412 (1019)
+...+.+|+ +..+++. +.++.|.+||. ..++.+.++..+..+ .++|+|||+.+....... ..+..++
T Consensus 4 ~~~~a~spd-g~~~~v~~~~~~~~~~~v~v~D~-~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~----~~~~~g~ 75 (355)
T d2bbkh_ 4 RILEAPAPD-ARRVYVNDPAHFAAVTQQFVIDG-EAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVF----SRIARGE 75 (355)
T ss_dssp CBCCCCCCC-TTEEEEEECGGGCSSEEEEEEET-TTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEE----EETTEEE
T ss_pred cEeEeeCCC-CCEEEEEecccCCCcCeEEEEEC-CCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCC----ccccccC
Confidence 333456787 4444443 35678999999 566777777765544 789999996432221111 1122356
Q ss_pred CCCcEEEEEccCCCeEEEEEcccc-------ccEeEEEEecCCCEEEEEEc--CCeEEEEECCCCceEEEEecCCc----
Q psy307 413 MDCRVKLWEVYKEHRCVRTYYGHR-------QAVRDICFNNTGTNFISAGY--DRYLKLWDTESGECISRFTSRKV---- 479 (1019)
Q Consensus 413 ~Dg~I~IWDl~~~~~~~~~l~~H~-------~~V~sl~fspdg~~l~S~s~--Dg~I~lWDl~t~~~i~~~~~~~~---- 479 (1019)
.|+.|++||+ .+++....+..+. .....++|++++++++.++. +..+.+||..+++.+..+.....
T Consensus 76 ~d~~v~v~D~-~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (355)
T d2bbkh_ 76 RTDYVEVFDP-VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF 154 (355)
T ss_dssp EEEEEEEECT-TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEE
T ss_pred CCCEEEEEEC-CCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEe
Confidence 6899999999 4555555554332 23456799999999877754 57899999999998888765432
Q ss_pred ----eEEEEEecCCCeeeeccCCCc--eee-----eCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeE
Q psy307 480 ----AYCVKFHPDEDKQHLDIPVDM--KYI-----ADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKT 548 (1019)
Q Consensus 480 ----v~~v~~~p~~~~~~~~~~~~~--~~i-----~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~ 548 (1019)
...+.+++++....+...... ... .......+....+.+++..++.++.++.+++|++..+.. ..+..
T Consensus 155 ~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~ 233 (355)
T d2bbkh_ 155 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPA 233 (355)
T ss_dssp EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCC
T ss_pred ecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE-EEEec
Confidence 235677888776655322211 111 112223355677888888999999999999999886532 11222
Q ss_pred Eecccc--------ccceEEEEEcCCCCEEEEEeCC----------CeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCC
Q psy307 549 FEGHMV--------AGYACSLDFSPDMSYLISGDAD----------GKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEP 610 (1019)
Q Consensus 549 l~gh~~--------~~~V~~v~fspdg~~Lasgs~D----------G~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~ 610 (1019)
..++.. ......+++++++..++....+ ..|.+||..+++.+..+..+ ..+.+++|+|+|.
T Consensus 234 ~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~-~~~~~~a~spDG~ 312 (355)
T d2bbkh_ 234 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEK 312 (355)
T ss_dssp EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSS
T ss_pred cCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC-CCEEEEEEcCCCC
Confidence 222210 0112347899999988766543 36999999999999888744 4578999999986
Q ss_pred c-EEEEEeCCCcEEEEeccceeeeeeec
Q psy307 611 S-KVVTAGWDAATAKVQDANIVKIAVEM 637 (1019)
Q Consensus 611 ~-~l~s~s~Dg~I~iwwd~~i~ki~~e~ 637 (1019)
. ++++++.|++|.+ ||...+++....
T Consensus 313 ~~l~v~~~~d~~i~v-~D~~tg~~~~~i 339 (355)
T d2bbkh_ 313 PLLYALSTGDKTLYI-HDAESGEELRSV 339 (355)
T ss_dssp CEEEEEETTTTEEEE-EETTTCCEEEEE
T ss_pred eEEEEEECCCCEEEE-EECCCCCEEEEE
Confidence 4 4567788999855 676666655443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.53 E-value=4e-12 Score=141.03 Aligned_cols=301 Identities=7% Similarity=-0.084 Sum_probs=186.8
Q ss_pred eccCCCCeEEEEEcCCCCcEEEEe----eCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCc
Q psy307 331 WEGHTKGISAIRWFPKSAHLLLSC----SMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAH 406 (1019)
Q Consensus 331 l~gH~~~V~~i~fspd~g~lLaSg----s~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~ 406 (1019)
..+|.+++.+++++|++..++++. +.++.|.+||. ..++.+.++..+..+ .++|+|||..+..+.. ...
T Consensus 16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~-~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~----~~~ 88 (373)
T d2madh_ 16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDA-GSGSILGHVNGGFLP--NPVAAHSGSEFALAST----SFS 88 (373)
T ss_pred cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEEC-CCCCEEEEEeCCCCc--cEEEcCCCCEEEEEee----cCC
Confidence 346888999999999855444432 34567999998 556677777766544 7899999964333221 112
Q ss_pred EEEEEeCCCcEEEEEccCCCeEEEEEccccccE-------eEEEEecCCCEEEEEEc--CCeEEEEECCCCceEEEEecC
Q psy307 407 LLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAV-------RDICFNNTGTNFISAGY--DRYLKLWDTESGECISRFTSR 477 (1019)
Q Consensus 407 ~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V-------~sl~fspdg~~l~S~s~--Dg~I~lWDl~t~~~i~~~~~~ 477 (1019)
....++.++.|.+||. .+++.+..+..+.... ..+.|+++++.++.... ++.+.+|+..+.+......
T Consensus 89 ~~~~~~~~~~v~v~D~-~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-- 165 (373)
T d2madh_ 89 RIAKGKRTDYVEVFDP-VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS-- 165 (373)
T ss_pred cccccccceEEEEEEC-CCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec--
Confidence 3344567789999999 5666666665554433 45789999997665544 5689999998877655443
Q ss_pred CceEEEEEecCCCeeeeccC-CCceeeeCC-----------------CCCcccEEEEcCCCCEEEEEecCCeEEEEEccC
Q psy307 478 KVAYCVKFHPDEDKQHLDIP-VDMKYIADP-----------------TMHSMPAVTSSPNNKWLACQSMDNKILIFSALN 539 (1019)
Q Consensus 478 ~~v~~v~~~p~~~~~~~~~~-~~~~~i~~~-----------------~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~ 539 (1019)
.+.++.++|++....+... .....+... .......+.+++++.+ +..+.++.+.+|+...
T Consensus 166 -~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~ 243 (373)
T d2madh_ 166 -SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISA 243 (373)
T ss_pred -cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEEEcCC
Confidence 3456677777655433111 111111110 1111223455555544 4556788999998876
Q ss_pred cccccceeEEeccc--------cccceEEEEEcCCCCEE----------EEEeCCCeEEEEeCCCCceeeeeeccCCCEE
Q psy307 540 RFKLNRKKTFEGHM--------VAGYACSLDFSPDMSYL----------ISGDADGKCYIWDWKTTKLFKKWKAHDGVCI 601 (1019)
Q Consensus 540 ~~~~~~~~~l~gh~--------~~~~V~~v~fspdg~~L----------asgs~DG~I~IWDl~t~~~l~~l~~h~~~V~ 601 (1019)
.... .......+. .......+++++++..+ ++...++.+.+||..+++.+..+. +...+.
T Consensus 244 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~ 321 (373)
T d2madh_ 244 AGAT-NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVD 321 (373)
T ss_pred CeEE-EEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCee
Confidence 4321 111111111 01223345666666554 345567789999999999998876 455789
Q ss_pred EEEEcCCCCc-EEEEEeCCCcEEEEeccceeeeeeecc--ccCCceee
Q psy307 602 STLWHPHEPS-KVVTAGWDAATAKVQDANIVKIAVEME--KQVPQLYQ 646 (1019)
Q Consensus 602 sl~~sp~~~~-~l~s~s~Dg~I~iwwd~~i~ki~~e~~--~~v~ql~~ 646 (1019)
+++|+|||.. ++++++.|++|++ ||...++...... +..+..+.
T Consensus 322 ~~a~spDG~~~l~vt~~~d~~v~v-~D~~tg~~~~~~~~~g~~P~~l~ 368 (373)
T d2madh_ 322 AISVAQDGGPDLYALSAGTEVLHI-YDAGAGDQDQSTVELGSGPQVLS 368 (373)
T ss_pred EEEECCCCCEEEEEEeCCCCeEEE-EECCCCCEEEEECCCCCCCcEEE
Confidence 9999999865 4578889999855 5776666665543 34444433
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.48 E-value=7.7e-12 Score=137.38 Aligned_cols=283 Identities=10% Similarity=-0.043 Sum_probs=163.6
Q ss_pred CCCCCCCeeeeC-----CCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEE----------eeCC
Q psy307 293 PTDYQGRSFLHP-----PHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLS----------CSMD 357 (1019)
Q Consensus 293 ~~~~~gr~~~~~-----~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaS----------gs~D 357 (1019)
+..++|+.++.. ..+..+.+|+... .+.+.++..+.. ..++|+|| +++|++ ++.|
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~t-------g~~~~~~~~g~~--~~~a~SpD-g~~l~v~~~~~~~~~~g~~d 77 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEA-------GRVIGMIDGGFL--PNPVVADD-GSFIAHASTVFSRIARGERT 77 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTT-------TEEEEEEEECSS--CEEEECTT-SSCEEEEEEEEEETTEEEEE
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCC-------CcEEEEEECCCC--CceEEcCC-CCEEEEEeCCCccccccCCC
Confidence 456788887543 2355688887652 356777776644 47999997 555544 3458
Q ss_pred CeEEEEecCCCcEEEEEecccCc-------cEeEEEEcCCCCceeEEEeecCCCCcEEEEE--eCCCcEEEEEccCCCeE
Q psy307 358 CRVKLWEVYKERRCVRTYYGHRQ-------AVRDICFNNTGTNFISAIRWFPKSAHLLLSC--SMDCRVKLWEVYKEHRC 428 (1019)
Q Consensus 358 g~I~IWdl~~~~~~~~~~~gh~~-------~V~~i~fspdg~~~vs~i~~~p~~~~~L~sg--s~Dg~I~IWDl~~~~~~ 428 (1019)
+.|++||+. +++.+..+..+.. ....++|++++ ..++.+ +.+..+.+|+. ..+..
T Consensus 78 ~~v~v~D~~-t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--------------~~~~v~~~~~~~~~~~~~~-~~~~~ 141 (355)
T d2bbkh_ 78 DYVEVFDPV-TLLPTADIELPDAPRFLVGTYPWMTSLTPDG--------------KTLLFYQFSPAPAVGVVDL-EGKAF 141 (355)
T ss_dssp EEEEEECTT-TCCEEEEEEETTCCCCCBSCCGGGEEECTTS--------------SEEEEEECSSSCEEEEEET-TTTEE
T ss_pred CEEEEEECC-CCCEEEEEecCCcceeecCCCCceEEEecCC--------------CeeEEecCCCCceeeeeec-CCCcE
Confidence 999999994 4555555543332 23456777777 344443 45678999999 55666
Q ss_pred EEEEccccc-------cEeEEEEecCCCEEEEE-EcCCeEEEEECCCCceEEEEecC-----CceEEEEEec-CCCeeee
Q psy307 429 VRTYYGHRQ-------AVRDICFNNTGTNFISA-GYDRYLKLWDTESGECISRFTSR-----KVAYCVKFHP-DEDKQHL 494 (1019)
Q Consensus 429 ~~~l~~H~~-------~V~sl~fspdg~~l~S~-s~Dg~I~lWDl~t~~~i~~~~~~-----~~v~~v~~~p-~~~~~~~ 494 (1019)
+..+..+.. ....+.++++++.++.. ..++.+.+++..+.......... .....+.+.+ ++....+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 221 (355)
T d2bbkh_ 142 KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQI 221 (355)
T ss_dssp EEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEE
T ss_pred eeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEE
Confidence 665544332 22334566666554433 23344555554433211000000 0000112222 2222222
Q ss_pred ccCCCceeeeCC-------------CCCcccEEEEcCCCCEEEEEecC----------CeEEEEEccCcccccceeEEec
Q psy307 495 DIPVDMKYIADP-------------TMHSMPAVTSSPNNKWLACQSMD----------NKILIFSALNRFKLNRKKTFEG 551 (1019)
Q Consensus 495 ~~~~~~~~i~~~-------------~~~~i~~v~~spdg~~Lasgs~D----------g~I~iwd~~~~~~~~~~~~l~g 551 (1019)
+........... .......+++++++..++..+.+ +.|.+||..++.. +..+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~---~~~~~~ 298 (355)
T d2bbkh_ 222 DLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER---LAKFEM 298 (355)
T ss_dssp ECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE---EEEEEE
T ss_pred ecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE---EEEecC
Confidence 222111111110 11223468899999988776544 3799999988743 333432
Q ss_pred cccccceEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcC
Q psy307 552 HMVAGYACSLDFSPDMS--YLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHP 607 (1019)
Q Consensus 552 h~~~~~V~~v~fspdg~--~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp 607 (1019)
. ..+.+++|+|||+ ++++++.|+.|+|||+++++.++++.++......+...+
T Consensus 299 ~---~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d 353 (355)
T d2bbkh_ 299 G---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 353 (355)
T ss_dssp E---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCC
T ss_pred C---CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCC
Confidence 2 3477899999998 456778899999999999999999987655445554443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.27 E-value=2.8e-10 Score=126.30 Aligned_cols=291 Identities=8% Similarity=-0.150 Sum_probs=176.3
Q ss_pred CCCCeEEEEEcCCCCcE--EEEeeCCCe--EEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEE
Q psy307 334 HTKGISAIRWFPKSAHL--LLSCSMDCR--VKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLL 409 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~l--LaSgs~Dg~--I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~ 409 (1019)
+.+....++..+++... .+++..+|. |.+||. ..++.+.++.++..+ .++|+|||..+...-.+.. .++
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~-~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~----~~~ 90 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCA-GCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFA----RSA 90 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEET-TTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEET----TTT
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeC-CCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCc----ccc
Confidence 33444445556653332 223444554 666687 566777777776654 5889999964332221111 122
Q ss_pred EEeCCCcEEEEEccCCCeEEEEEccccc-------cEeEEEEecCCCEEEEEE-cCCeEEEEECCCCceEEEEecCC---
Q psy307 410 SCSMDCRVKLWEVYKEHRCVRTYYGHRQ-------AVRDICFNNTGTNFISAG-YDRYLKLWDTESGECISRFTSRK--- 478 (1019)
Q Consensus 410 sgs~Dg~I~IWDl~~~~~~~~~l~~H~~-------~V~sl~fspdg~~l~S~s-~Dg~I~lWDl~t~~~i~~~~~~~--- 478 (1019)
+|+.|+.|.+||. .+.+++..+..+.. ....++|+|||++++++. .++.|.+||+.+++.+..+..+.
T Consensus 91 ~g~~d~~v~v~D~-~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 169 (368)
T d1mdah_ 91 KGKRTDYVEVFDP-VTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH 169 (368)
T ss_dssp SSSEEEEEEEECT-TTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC
T ss_pred ccccCCeEEEEEC-CCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce
Confidence 3456888999999 55566665544322 234679999999988776 47999999999999988876543
Q ss_pred -----ceEEEEEecCCCeeeeccCCCcee-------eeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccce
Q psy307 479 -----VAYCVKFHPDEDKQHLDIPVDMKY-------IADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRK 546 (1019)
Q Consensus 479 -----~v~~v~~~p~~~~~~~~~~~~~~~-------i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~ 546 (1019)
....+.+++++....+........ ........+..+.+.+++..+... ++.+.+++....... ..
T Consensus 170 ~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~-~~ 246 (368)
T d1mdah_ 170 IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGAT-MK 246 (368)
T ss_dssp CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCE-EE
T ss_pred EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceE-EE
Confidence 223466777777666543322221 111223344567777777665543 455666665543211 11
Q ss_pred eEEeccc--------cccceEEEEEcCCCCEEEEEeCC---------CeEEEEeCCCCceeeeeeccCCCEEEEEEcCCC
Q psy307 547 KTFEGHM--------VAGYACSLDFSPDMSYLISGDAD---------GKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609 (1019)
Q Consensus 547 ~~l~gh~--------~~~~V~~v~fspdg~~Lasgs~D---------G~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~ 609 (1019)
.....+. ..+....++++|++..++....+ ..|.+||..+++.+..+... ..+.+++|+|||
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~~a~spDG 325 (368)
T d1mdah_ 247 AAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDG 325 (368)
T ss_dssp CCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEECEEEECCSS
T ss_pred eecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCC-CceeEEEECCCC
Confidence 1111100 00112247889998876654322 35999999999999888743 468899999998
Q ss_pred Cc-EEEEEeCCCcEEEEeccceeeeeeec
Q psy307 610 PS-KVVTAGWDAATAKVQDANIVKIAVEM 637 (1019)
Q Consensus 610 ~~-~l~s~s~Dg~I~iwwd~~i~ki~~e~ 637 (1019)
.. ++++++.|+.|.+ ||...++.....
T Consensus 326 ~~~ly~s~~~~~~v~v-~D~~tgk~~~~i 353 (368)
T d1mdah_ 326 ASDNYANSAGTEVLDI-YDAASDQDQSSV 353 (368)
T ss_dssp SCEEEEEETTTTEEEE-EESSSCEEEEEC
T ss_pred CEEEEEEeCCCCeEEE-EECCCCCEEEEE
Confidence 64 4567777888855 576666655443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.25 E-value=1.5e-10 Score=128.49 Aligned_cols=272 Identities=8% Similarity=-0.103 Sum_probs=160.4
Q ss_pred CCCCCe---eeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEe----------eCCCeEE
Q psy307 295 DYQGRS---FLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSC----------SMDCRVK 361 (1019)
Q Consensus 295 ~~~gr~---~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSg----------s~Dg~I~ 361 (1019)
..+|+. .+....++...+|-.... ..+.+.++.+|... .++|+|| ++.|+++ +.|+.|.
T Consensus 28 ~~~~~~~~v~~~~~~~g~~~~~~~d~~-----~~~~~~~~~~~~~~--~~a~spD-g~~i~~~~~~~~~~~~g~~d~~v~ 99 (368)
T d1mdah_ 28 GAISRRSHITLPAYFAGTTENWVSCAG-----CGVTLGHSLGAFLS--LAVAGHS-GSDFALASTSFARSAKGKRTDYVE 99 (368)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETT-----TTEEEEEEEECTTC--EEEECTT-SSCEEEEEEEETTTTSSSEEEEEE
T ss_pred CCCCcceeEEeeccCCCcceEEEEeCC-----CCcEEEEEeCCCCC--cceECCC-CCEEEEEcccCccccccccCCeEE
Confidence 455554 233455666666644322 34567777777655 5899997 5555543 3588899
Q ss_pred EEecCCCcEEEEEecccCc-------cEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcc
Q psy307 362 LWEVYKERRCVRTYYGHRQ-------AVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG 434 (1019)
Q Consensus 362 IWdl~~~~~~~~~~~gh~~-------~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~ 434 (1019)
+||. .+.+++..+..+.. ....++|+|||+ .++++...++.+.+||+ ...+....+..
T Consensus 100 v~D~-~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk-------------~l~va~~~~~~v~~~d~-~~~~~~~~~~~ 164 (368)
T d1mdah_ 100 VFDP-VTFLPIADIELPDAPRFSVGPRVHIIGNCASSA-------------CLLFFLFGSSAAAGLSV-PGASDDQLTKS 164 (368)
T ss_dssp EECT-TTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS-------------CEEEEECSSSCEEEEEE-TTTEEEEEEEC
T ss_pred EEEC-CCCcEeeeecCCccceecccCCccceEECCCCC-------------EEEEEeCCCCeEEEEEC-CCCcEeEEeec
Confidence 9999 44566665544332 234578888884 34444456799999999 66666666655
Q ss_pred ccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEe-------cCCceEEEEEecCCCe--------eeeccCCC
Q psy307 435 HRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFT-------SRKVAYCVKFHPDEDK--------QHLDIPVD 499 (1019)
Q Consensus 435 H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~-------~~~~v~~v~~~p~~~~--------~~~~~~~~ 499 (1019)
+..... +......++..+.||++.+|++.......... ....+..+.+.+++.. ........
T Consensus 165 ~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~ 241 (368)
T d1mdah_ 165 ASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAA 241 (368)
T ss_dssp SSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSS
T ss_pred cCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCC
Confidence 543321 11223456667778888777765543322211 0111222333333221 11111111
Q ss_pred ceeeeCC-------------CCCcccEEEEcCCCCEEEEEecC---------CeEEEEEccCcccccceeEEeccccccc
Q psy307 500 MKYIADP-------------TMHSMPAVTSSPNNKWLACQSMD---------NKILIFSALNRFKLNRKKTFEGHMVAGY 557 (1019)
Q Consensus 500 ~~~i~~~-------------~~~~i~~v~~spdg~~Lasgs~D---------g~I~iwd~~~~~~~~~~~~l~gh~~~~~ 557 (1019)
....... .......++++|++..++....+ +.|.+||..++..+ ..+... ..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~---~~~~~~---~~ 315 (368)
T d1mdah_ 242 GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS---GPISNG---HD 315 (368)
T ss_dssp CCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE---ECCEEE---EE
T ss_pred ceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEe---EEecCC---Cc
Confidence 1111111 11223468899998887665432 36899999887433 332222 44
Q ss_pred eEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCceeeeeeccCC
Q psy307 558 ACSLDFSPDMS--YLISGDADGKCYIWDWKTTKLFKKWKAHDG 598 (1019)
Q Consensus 558 V~~v~fspdg~--~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~ 598 (1019)
+.+++|+|||+ +++++..|+.|+|||..+++.+.++....+
T Consensus 316 ~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~ 358 (368)
T d1mdah_ 316 SDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358 (368)
T ss_dssp ECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred eeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC
Confidence 77899999997 346777889999999999999999886543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.15 E-value=1e-09 Score=126.01 Aligned_cols=114 Identities=8% Similarity=0.142 Sum_probs=86.2
Q ss_pred EEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEe-----cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEE---
Q psy307 340 AIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTY-----YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSC--- 411 (1019)
Q Consensus 340 ~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~-----~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sg--- 411 (1019)
.+.|.++ +.+++. .|+.|.+||+.++. ....+ ..|...|.++.|||||. +|+.+
T Consensus 21 ~~~W~~d-~~~~~~--~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~i~~~~~SpDg~--------------~i~~~~~~ 82 (470)
T d2bgra1 21 SLRWISD-HEYLYK--QENNILVFNAEYGN-SSVFLENSTFDEFGHSINDYSISPDGQ--------------FILLEYNY 82 (470)
T ss_dssp CCEECSS-SEEEEE--SSSCEEEEETTTCC-EEEEECTTTTTTSSSCCCEEEECTTSS--------------EEEEEEEE
T ss_pred CCEeCCC-CEEEEE--cCCcEEEEECCCCC-EEEEEchhhhhhccCccceeEECCCCC--------------EEEEEECC
Confidence 4678885 666664 57889999995544 33333 44567899999999994 45544
Q ss_pred ------eCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEE
Q psy307 412 ------SMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRF 474 (1019)
Q Consensus 412 ------s~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~ 474 (1019)
+.++.+.|||+. ++. ...+..|...+..+.|||||++++.. .++.+.+|+..+++.....
T Consensus 83 ~~~~r~s~~~~~~l~d~~-~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t 148 (470)
T d2bgra1 83 VKQWRHSYTASYDIYDLN-KRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRIT 148 (470)
T ss_dssp EECSSSCEEEEEEEEETT-TTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECC
T ss_pred cceeeeccCceEEEEECC-CCc-ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeee
Confidence 335788999994 444 55688899999999999999999985 5788999999998876544
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.13 E-value=1.4e-09 Score=124.90 Aligned_cols=142 Identities=10% Similarity=0.080 Sum_probs=95.6
Q ss_pred CCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEee---------CCCeEEEEec
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCS---------MDCRVKLWEV 365 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs---------~Dg~I~IWdl 365 (1019)
-.+|.++.. .|+.+.+|+........+ -.-+++.+|...|.++.|||| ++.|+.++ .++.+.|||+
T Consensus 25 ~~d~~~~~~--~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~i~~~~~SpD-g~~i~~~~~~~~~~r~s~~~~~~l~d~ 99 (470)
T d2bgra1 25 ISDHEYLYK--QENNILVFNAEYGNSSVF--LENSTFDEFGHSINDYSISPD-GQFILLEYNYVKQWRHSYTASYDIYDL 99 (470)
T ss_dssp CSSSEEEEE--SSSCEEEEETTTCCEEEE--ECTTTTTTSSSCCCEEEECTT-SSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CCCCEEEEE--cCCcEEEEECCCCCEEEE--EchhhhhhccCccceeEECCC-CCEEEEEECCcceeeeccCceEEEEEC
Confidence 344544433 367889998775432111 011356778889999999997 66777664 3678899999
Q ss_pred CCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcc-----------
Q psy307 366 YKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG----------- 434 (1019)
Q Consensus 366 ~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~----------- 434 (1019)
.. ++ +..+..|...+..+.|||||. .|+. ..++.+.+|+... +...+....
T Consensus 100 ~~-~~-~~~l~~~~~~~~~~~~SPDG~--------------~ia~-~~~~~l~~~~~~~-g~~~~~t~~~~~~~~~~g~~ 161 (470)
T d2bgra1 100 NK-RQ-LITEERIPNNTQWVTWSPVGH--------------KLAY-VWNNDIYVKIEPN-LPSYRITWTGKEDIIYNGIT 161 (470)
T ss_dssp TT-TE-ECCSSCCCTTEEEEEECSSTT--------------CEEE-EETTEEEEESSTT-SCCEECCSCCBTTTEEESBC
T ss_pred CC-Cc-ccccccCCccccccccccCcc--------------eeeE-eecccceEEECCC-CceeeeeeccCCCccccccc
Confidence 44 44 556888999999999999994 4554 3567899999843 333332221
Q ss_pred -------ccccEeEEEEecCCCEEEEEEcCCe
Q psy307 435 -------HRQAVRDICFNNTGTNFISAGYDRY 459 (1019)
Q Consensus 435 -------H~~~V~sl~fspdg~~l~S~s~Dg~ 459 (1019)
+.+....+.|||||++|+....|.+
T Consensus 162 d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~ 193 (470)
T d2bgra1 162 DWVYEEEVFSAYSALWWSPNGTFLAYAQFNDT 193 (470)
T ss_dssp CHHHHHHTSSSSBCEEECTTSSEEEEEEEECT
T ss_pred ceeeeeeecCCccccEECCCCCccceeEecCC
Confidence 2233466789999999998876543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.13 E-value=5.7e-10 Score=125.40 Aligned_cols=256 Identities=10% Similarity=0.039 Sum_probs=166.5
Q ss_pred EEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCc--------------------------eeEEEeecCC
Q psy307 350 LLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTN--------------------------FISAIRWFPK 403 (1019)
Q Consensus 350 lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~--------------------------~vs~i~~~p~ 403 (1019)
.++||+.+|.|+||++ ...+.+.++.- |+|++.. .++.....|+
T Consensus 13 ~f~Sgg~sG~V~V~dl-pS~r~l~~IpV---------fspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpD 82 (441)
T d1qnia2 13 GFWSGGHQGEVRVLGV-PSMRELMRIPV---------FNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYD 82 (441)
T ss_dssp EEEECBTTCCEEEEEE-TTTEEEEEECS---------SSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEE
T ss_pred EEEeCCCCCcEEEEeC-CCCcEEEEEEe---------EcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCC
Confidence 4778889999999999 45555555421 2222210 0122222344
Q ss_pred CCcEEEEEeCCCcEEEEEccCCCeEEEEEc-cccccEeEEEEecCCCE--EEEEEcCC-----------------eEEEE
Q psy307 404 SAHLLLSCSMDCRVKLWEVYKEHRCVRTYY-GHRQAVRDICFNNTGTN--FISAGYDR-----------------YLKLW 463 (1019)
Q Consensus 404 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~-~H~~~V~sl~fspdg~~--l~S~s~Dg-----------------~I~lW 463 (1019)
+..++++...++.|.++|+ ...++...+. .+...+..++|+|+|++ ++..+.+. .+..+
T Consensus 83 Gr~lfV~d~~~~rVavIDl-~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~i 161 (441)
T d1qnia2 83 GKYLFINDKANTRVARIRL-DIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAI 161 (441)
T ss_dssp EEEEEEEETTTTEEEEEET-TTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEEC-CCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEee
Confidence 3345566678899999999 5555555543 46788999999999985 44444332 34669
Q ss_pred ECCCCceEEEEecCCceEEEEEecCCCeeeeccC-----------------------------------------CCcee
Q psy307 464 DTESGECISRFTSRKVAYCVKFHPDEDKQHLDIP-----------------------------------------VDMKY 502 (1019)
Q Consensus 464 Dl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~-----------------------------------------~~~~~ 502 (1019)
|..+.+...++.....+..+.++|++....+... .....
T Consensus 162 D~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~v 241 (441)
T d1qnia2 162 DAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPV 241 (441)
T ss_dssp ETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCE
T ss_pred cCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEE
Confidence 9999999988888888899999999986654100 00000
Q ss_pred e----------eCCCCCcccEEEEcCCCCEEE-EEecCCeEEEEEccCccc-----ccceeEEeccc-cccceEEEEEcC
Q psy307 503 I----------ADPTMHSMPAVTSSPNNKWLA-CQSMDNKILIFSALNRFK-----LNRKKTFEGHM-VAGYACSLDFSP 565 (1019)
Q Consensus 503 i----------~~~~~~~i~~v~~spdg~~La-sgs~Dg~I~iwd~~~~~~-----~~~~~~l~gh~-~~~~V~~v~fsp 565 (1019)
+ .-+.......+.++|||++++ ++..+++|.+||+..... +.....+.++. ..-.....+|++
T Consensus 242 vd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~ 321 (441)
T d1qnia2 242 VDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG 321 (441)
T ss_dssp EECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS
T ss_pred EEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecC
Confidence 0 111223346799999999875 567889999999865321 11112222222 112245678999
Q ss_pred CCCEEEEEeCCCeEEEEeCCC----------Cceeeee-----eccCCCEEEEEEcCCCCcEEEEEe
Q psy307 566 DMSYLISGDADGKCYIWDWKT----------TKLFKKW-----KAHDGVCISTLWHPHEPSKVVTAG 617 (1019)
Q Consensus 566 dg~~Lasgs~DG~I~IWDl~t----------~~~l~~l-----~~h~~~V~sl~~sp~~~~~l~s~s 617 (1019)
+|..+.+...|..|..|++.. ...+..+ .+|...+.+..++|+| .+|++++
T Consensus 322 ~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdG-k~l~s~~ 387 (441)
T d1qnia2 322 RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADG-KWLVVLS 387 (441)
T ss_dssp SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCC-CEEEEEE
T ss_pred CceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCC-cEEEecC
Confidence 999899999999999999742 1234444 4676667777899999 6999994
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.84 E-value=7.7e-07 Score=95.33 Aligned_cols=249 Identities=8% Similarity=-0.005 Sum_probs=158.7
Q ss_pred CccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCC
Q psy307 324 PKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPK 403 (1019)
Q Consensus 324 p~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~ 403 (1019)
|.+.++++...+ .+..+++.|+ |+++++...+++|..|+.... ...+......+.+++|+++|
T Consensus 17 ~~~v~~~~p~~~-~~e~iAv~pd-G~l~vt~~~~~~I~~i~p~g~---~~~~~~~~~~~~gla~~~dG------------ 79 (302)
T d2p4oa1 17 PAKIITSFPVNT-FLENLASAPD-GTIFVTNHEVGEIVSITPDGN---QQIHATVEGKVSGLAFTSNG------------ 79 (302)
T ss_dssp CEEEEEEECTTC-CEEEEEECTT-SCEEEEETTTTEEEEECTTCC---EEEEEECSSEEEEEEECTTS------------
T ss_pred cccEEEECCCCC-CcCCEEECCC-CCEEEEeCCCCEEEEEeCCCC---EEEEEcCCCCcceEEEcCCC------------
Confidence 445566664433 5888999996 789999999999988886433 23344556778999999998
Q ss_pred CCcEEEEEeCCCcEEEEEccCCCeEEEEE--ccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceE
Q psy307 404 SAHLLLSCSMDCRVKLWEVYKEHRCVRTY--YGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY 481 (1019)
Q Consensus 404 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l--~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~ 481 (1019)
+++++...++.+.+|+..........+ .......+.+++.++++.+++.+.++.+..+|...+.........
T Consensus 80 --~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~---- 153 (302)
T d2p4oa1 80 --DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHP---- 153 (302)
T ss_dssp --CEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECG----
T ss_pred --CeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCC----
Confidence 678888888888888875443333332 234566889999999998888888899999998776533222111
Q ss_pred EEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEE
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSL 561 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v 561 (1019)
... .............+.++. +.++++.+..+.|..++............+... .....+
T Consensus 154 ------~~~----------~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~pdgi 213 (302)
T d2p4oa1 154 ------MLA----------RSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDF 213 (302)
T ss_dssp ------GGS----------CSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES---CCCSSE
T ss_pred ------ccc----------eeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCC---CCCcce
Confidence 000 000011112223444443 345566677889999988754333222222222 234569
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCc-eeeeeeccCCCEEEEEE---cCCCCcEEEE
Q psy307 562 DFSPDMSYLISGDADGKCYIWDWKTTK-LFKKWKAHDGVCISTLW---HPHEPSKVVT 615 (1019)
Q Consensus 562 ~fspdg~~Lasgs~DG~I~IWDl~t~~-~l~~l~~h~~~V~sl~~---sp~~~~~l~s 615 (1019)
+++++|+++++...++.|..++..... .+......-...++++| .+|+..++++
T Consensus 214 a~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvt 271 (302)
T d2p4oa1 214 AFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV 271 (302)
T ss_dssp EEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred EECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEE
Confidence 999999988888889999999865332 12233333345789999 5666433333
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=7.8e-07 Score=92.73 Aligned_cols=229 Identities=12% Similarity=0.066 Sum_probs=133.9
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
...+..+...+...+||||+..+.++....+...+|...........+..+........|+|+|. .+
T Consensus 31 ~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-------------~i 97 (269)
T d2hqsa1 31 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS-------------KL 97 (269)
T ss_dssp CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSS-------------EE
T ss_pred cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCC-------------ee
Confidence 44555667788999999985555555555554444443333333445556777888888888885 33
Q ss_pred EEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEE-cCCe--EEEEECCCCceEEEEecCCceEEEE
Q psy307 408 LLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG-YDRY--LKLWDTESGECISRFTSRKVAYCVK 484 (1019)
Q Consensus 408 L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s-~Dg~--I~lWDl~t~~~i~~~~~~~~v~~v~ 484 (1019)
++....++...++..............+........+++++..++..+ .++. |.+.++..+......
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~---------- 167 (269)
T d2hqsa1 98 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT---------- 167 (269)
T ss_dssp EEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC----------
T ss_pred eEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeee----------
Confidence 444444444444444333333334444444455557777777655444 3443 444555444322111
Q ss_pred EecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC-e--EEEEEccCcccccceeEEeccccccceEEE
Q psy307 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN-K--ILIFSALNRFKLNRKKTFEGHMVAGYACSL 561 (1019)
Q Consensus 485 ~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg-~--I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v 561 (1019)
..........++|+++.++..+.++ . |.+.+...+. .... .+. +.....
T Consensus 168 ---------------------~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-~~~--~~~~~p 219 (269)
T d2hqsa1 168 ---------------------WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----VQVL-SST--FLDETP 219 (269)
T ss_dssp ---------------------CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC----EEEC-CCS--SSCEEE
T ss_pred ---------------------cccccccccccccccceeEEEeecCCceeeeEeeccccc----ceEe-ecC--ccccce
Confidence 1122334567888998888776554 3 4444443331 1222 222 446678
Q ss_pred EEcCCCCEEEEEeC---CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCC
Q psy307 562 DFSPDMSYLISGDA---DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPH 608 (1019)
Q Consensus 562 ~fspdg~~Lasgs~---DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~ 608 (1019)
.|||||++|+-.+. .+.|+++++..+.. ..+....+.+...+|+|-
T Consensus 220 ~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 220 SLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp EECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEECCC
T ss_pred EECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCCC
Confidence 99999999875543 34789999987654 456566778888999983
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.76 E-value=1.3e-07 Score=105.92 Aligned_cols=258 Identities=10% Similarity=0.021 Sum_probs=160.0
Q ss_pred eeeCCCCCceeeecCCCCCC-----ccCC------------------ccceeeeccCCCCeEEEEEcCCCCcEEEEeeCC
Q psy307 301 FLHPPHDVGTNLRSDTPPDR-----CFLP------------------KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMD 357 (1019)
Q Consensus 301 ~~~~~~D~~v~lw~~~~~~~-----~~lp------------------~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~D 357 (1019)
|+++++++.|.+|+...... .+-| ......-..|........++||+..++++...+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 67888999999998753210 0000 001111233555666777788744455666789
Q ss_pred CeEEEEecCCCcEEEEEec-ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC-----------------CcEEE
Q psy307 358 CRVKLWEVYKERRCVRTYY-GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD-----------------CRVKL 419 (1019)
Q Consensus 358 g~I~IWdl~~~~~~~~~~~-gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D-----------------g~I~I 419 (1019)
+.|.+||+ ...++...+. .+...+..++|+|+|... +++.++.+ ..+..
T Consensus 94 ~rVavIDl-~t~k~~~ii~iP~g~gphgi~~spdg~t~------------YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~ 160 (441)
T d1qnia2 94 TRVARIRL-DIMKTDKITHIPNVQAIHGLRLQKVPKTN------------YVFCNAEFVIPQPNDGTDFSLDNSYTMFTA 160 (441)
T ss_dssp TEEEEEET-TTTEEEEEEECTTCCCEEEEEECCSSBCC------------EEEEEECSCEESSCSSSCCCGGGEEEEEEE
T ss_pred CEEEEEEC-CCCcEeeEEecCCCCCccceEEeccCCEE------------EEEeccCCcccccCcccccccccccceEEe
Confidence 99999999 4555555443 467789999999999632 22222222 12345
Q ss_pred EEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcC-----------------------------------------C
Q psy307 420 WEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD-----------------------------------------R 458 (1019)
Q Consensus 420 WDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~D-----------------------------------------g 458 (1019)
+|..+. ........ .+....+.|+|+|+++++++.+ +
T Consensus 161 iD~~t~-~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~ 238 (441)
T d1qnia2 161 IDAETM-DVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSK 238 (441)
T ss_dssp EETTTC-SEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred ecCccc-eeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCC
Confidence 666333 23333322 2346778999999998877753 3
Q ss_pred eEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCC-Cceeee---------------------CCC-CCcccEEE
Q psy307 459 YLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPV-DMKYIA---------------------DPT-MHSMPAVT 515 (1019)
Q Consensus 459 ~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~-~~~~i~---------------------~~~-~~~i~~v~ 515 (1019)
.+.+++......+..+..++.+..+.++||+....+.... ....+. .+. .-.....+
T Consensus 239 v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~ 318 (441)
T d1qnia2 239 VPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTT 318 (441)
T ss_dssp CCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEE
T ss_pred cEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccce
Confidence 5566666777788888888889999999999977652111 111111 110 11123458
Q ss_pred EcCCCCEEEEEecCCeEEEEEccCc------ccc-cceeEE-----eccccccceEEEEEcCCCCEEEEEeC
Q psy307 516 SSPNNKWLACQSMDNKILIFSALNR------FKL-NRKKTF-----EGHMVAGYACSLDFSPDMSYLISGDA 575 (1019)
Q Consensus 516 ~spdg~~Lasgs~Dg~I~iwd~~~~------~~~-~~~~~l-----~gh~~~~~V~~v~fspdg~~Lasgs~ 575 (1019)
|+++|..+.+...|.+|..|++... ... ..+..+ .||. ..+.+.+++|||+||++++.
T Consensus 319 fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~--~~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 319 FDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHN--HASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp ECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEE--EETTTTSTTCCCCEEEEEES
T ss_pred ecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCC--ccccccccCCCCcEEEecCc
Confidence 9999998899999999999997521 111 122233 4565 33556789999999999953
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.75 E-value=4e-06 Score=90.27 Aligned_cols=256 Identities=13% Similarity=0.089 Sum_probs=144.5
Q ss_pred CCeEEEEEcCCCCcEEEEeeC-------CCeEEEEecCCCcEEEEEec---ccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSM-------DCRVKLWEVYKERRCVRTYY---GHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~-------Dg~I~IWdl~~~~~~~~~~~---gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
...-.++|.|+ |++.++... +|+|..||............ .....-..+.|.+++
T Consensus 18 ~g~EGpa~d~d-G~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg-------------- 82 (314)
T d1pjxa_ 18 PGAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDA-------------- 82 (314)
T ss_dssp TTCEEEEECTT-SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSS--------------
T ss_pred CCCeEeEEeCC-CCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCC--------------
Confidence 34567889996 565554322 46788888754332221111 111224567777777
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEcc-cc----ccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCce
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYG-HR----QAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVA 480 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~-H~----~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v 480 (1019)
+.++++...+.|...+... . ....+.. .. ...+.+++.++|+..++-.. +.+..|+..... ....-
T Consensus 83 ~~l~vad~~~~i~~~~~~g-~-~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~-~~~~~~~~~~~~------~~~~G 153 (314)
T d1pjxa_ 83 NQLFVADMRLGLLVVQTDG-T-FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPA-GEVAPADYTRSM------QEKFG 153 (314)
T ss_dssp SEEEEEETTTEEEEEETTS-C-EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECB-CBCTTSCCCBTT------SSSCE
T ss_pred CEEEEEECCCeEEEEeCCC-c-EEEEEeccccccccCCCcEEEECCCCCEEEecCc-cCccccccccee------ccCCc
Confidence 5666666667788888632 2 2222211 11 13577899999987766432 111111110000 00000
Q ss_pred EEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCC-----EEEEEecCCeEEEEEccCcccccceeEEeccc--
Q psy307 481 YCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK-----WLACQSMDNKILIFSALNRFKLNRKKTFEGHM-- 553 (1019)
Q Consensus 481 ~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~-----~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~-- 553 (1019)
....+.|++....+. ........++|+|+++ ++++-+..+.|..|++.....+.....+....
T Consensus 154 ~v~~~~~dg~~~~~~----------~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~ 223 (314)
T d1pjxa_ 154 SIYCFTTDGQMIQVD----------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT 223 (314)
T ss_dssp EEEEECTTSCEEEEE----------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred eEEEEeecCceeEee----------CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccc
Confidence 011122222211100 0011123566766653 44555778899999876443332222221111
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 554 VAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 554 ~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
..+..-.+++..+|++.++....+.|.+||..+++.+..+..+...+++++|.|++..+++|.+.+|+|..+
T Consensus 224 ~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~ 295 (314)
T d1pjxa_ 224 HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF 295 (314)
T ss_dssp SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred ccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 112356799999999888887889999999998888887877667789999999886677888888888654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.73 E-value=1.6e-06 Score=90.59 Aligned_cols=234 Identities=8% Similarity=0.025 Sum_probs=141.8
Q ss_pred CeEEEEEcCCCCcEEE-EeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 337 GISAIRWFPKSAHLLL-SCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLa-Sgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
.-.+|++.++ |.+.+ ..+..+.|..++............+. .....++++++| .++++....+
T Consensus 15 ~P~~vavd~d-G~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~gvav~~~g--------------~i~v~d~~~~ 78 (260)
T d1rwia_ 15 SPSGVAVDSA-GNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAG--------------TVYVTDFNNR 78 (260)
T ss_dssp CEEEEEECTT-CCEEEEECSSSCEEEEEC----CEEECCCCSC-CSCCCEEECTTC--------------CEEEEETTTE
T ss_pred CCCEEEEcCC-CCEEEEEcCCCCEEEEEcCCCceEEEeccCCc-cCceEEEEcCCC--------------CEEEeeeeec
Confidence 4589999997 55444 45666888888764443333222222 234667777777 5666665556
Q ss_pred cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeec
Q psy307 416 RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLD 495 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~ 495 (1019)
.+++++- .....+.. ........+|++.++++.+++-..+..+..++........ +
T Consensus 79 ~i~~~~~-~~~~~~~~-~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~-~--------------------- 134 (260)
T d1rwia_ 79 VVTLAAG-SNNQTVLP-FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-L--------------------- 134 (260)
T ss_dssp EEEECTT-CSCCEECC-CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE-C---------------------
T ss_pred eeeeeee-ccceeeee-eeeeeecccccccccceeEeeccccccccccccccceeee-e---------------------
Confidence 6665543 22222222 2223456788999998877665555666666544322110 0
Q ss_pred cCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC
Q psy307 496 IPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA 575 (1019)
Q Consensus 496 ~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~ 575 (1019)
..........++++++|+.+++...++.|..++...... ..+.. ........++++++|+++++...
T Consensus 135 --------~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~----~~~~~-~~~~~p~gi~~d~~g~l~vsd~~ 201 (260)
T d1rwia_ 135 --------PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ----VVLPF-TDITAPWGIAVDEAGTVYVTEHN 201 (260)
T ss_dssp --------CCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE----EECCC-SSCCSEEEEEECTTCCEEEEETT
T ss_pred --------eecccCCcceeeecCCCCEeeecccccccccccccccee----eeeec-cccCCCccceeeeeeeeeeeecC
Confidence 001123345788899999888888889999999875422 11111 11245788999999998888888
Q ss_pred CCeEEEEeCCCCceeeeee-ccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 576 DGKCYIWDWKTTKLFKKWK-AHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 576 DG~I~IWDl~t~~~l~~l~-~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.+.|..++...... ..+. ..-....++++++++ .++++-..+++|+++
T Consensus 202 ~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d~~g-~l~vad~~~~rI~~i 250 (260)
T d1rwia_ 202 TNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVVKL 250 (260)
T ss_dssp TTEEEEECTTCSCC-EECCCCSCCCEEEEEECTTC-CEEEEEGGGTEEEEE
T ss_pred CCEEEEEeCCCCeE-EEEccCCCCCeEEEEEeCCC-CEEEEECCCCEEEEE
Confidence 88998888654432 2222 222456899999987 577776666777544
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.61 E-value=3.3e-05 Score=81.16 Aligned_cols=235 Identities=11% Similarity=0.180 Sum_probs=149.8
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccC------ccEeEEEEcCCCCceeEEEeecCCCCcEEEE
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHR------QAVRDICFNNTGTNFISAIRWFPKSAHLLLS 410 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~------~~V~~i~fspdg~~~vs~i~~~p~~~~~L~s 410 (1019)
....|+++++ +.++++-...+.|++||.. +..++.+.... ..-..+++ .+.....+++
T Consensus 24 ~P~gvavd~d-g~i~VaD~~n~rI~v~d~~--G~~~~~~~~~~~~~~~~~~p~~~~~-------------~~~~~~~~~~ 87 (279)
T d1q7fa_ 24 EPSGVAVNAQ-NDIIVADTNNHRIQIFDKE--GRFKFQFGECGKRDSQLLYPNRVAV-------------VRNSGDIIVT 87 (279)
T ss_dssp CEEEEEECTT-CCEEEEEGGGTEEEEECTT--SCEEEEECCBSSSTTCBSSEEEEEE-------------ETTTTEEEEE
T ss_pred CccEEEEcCC-CCEEEEECCCCEEEEEeCC--CCEEEEecccCCCcccccccccccc-------------ccccccccee
Confidence 3578999995 7788887788999999963 44555442211 11222322 2333344443
Q ss_pred E-eCCCcEEEEEccCCCeEEEEE-ccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecC
Q psy307 411 C-SMDCRVKLWEVYKEHRCVRTY-YGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPD 488 (1019)
Q Consensus 411 g-s~Dg~I~IWDl~~~~~~~~~l-~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~ 488 (1019)
. +.++.|.+++. .+.....+ .........+++.++|..+++....+.+.+++.. ++.+..+...
T Consensus 88 ~~~~~~~i~~~~~--~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~----------- 153 (279)
T d1q7fa_ 88 ERSPTHQIQIYNQ--YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCS----------- 153 (279)
T ss_dssp ECGGGCEEEEECT--TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECT-----------
T ss_pred ccCCccccccccc--cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeeccccc-----------
Confidence 3 34456666664 34444444 3345667788888888877776666777777643 4444443211
Q ss_pred CCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCC
Q psy307 489 EDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMS 568 (1019)
Q Consensus 489 ~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~ 568 (1019)
.+......+++.+++..+++....+.|.+||.... .+..+...........|+++++|+
T Consensus 154 -----------------~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~----~~~~~g~~g~~~~P~giavD~~G~ 212 (279)
T d1q7fa_ 154 -----------------KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ----YLRQIGGEGITNYPIGVGINSNGE 212 (279)
T ss_dssp -----------------TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC----EEEEESCTTTSCSEEEEEECTTCC
T ss_pred -----------------ccccccceeeeccceeEEeeeccccceeeeecCCc----eeeeecccccccCCcccccccCCe
Confidence 12234456778889988888888999999997653 233342211224578899999999
Q ss_pred EEEEEeC-CCeEEEEeCCCCceeeeeecc--CCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 569 YLISGDA-DGKCYIWDWKTTKLFKKWKAH--DGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 569 ~Lasgs~-DG~I~IWDl~t~~~l~~l~~h--~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
++++-.. +++|.+|+ .+|+.+.++... ......+++.|+| .+ +.++.+++|++|
T Consensus 213 i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG-~l-~V~~~n~~v~~f 269 (279)
T d1q7fa_ 213 ILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDG-SV-VLASKDYRLYIY 269 (279)
T ss_dssp EEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTT-EE-EEEETTTEEEEE
T ss_pred EEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCC-cE-EEEeCCCeEEEE
Confidence 7776544 45799998 568888777533 2357899999987 44 455678888776
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.59 E-value=1.2e-05 Score=88.38 Aligned_cols=253 Identities=12% Similarity=0.041 Sum_probs=136.7
Q ss_pred CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEe-cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe
Q psy307 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTY-YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS 412 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~-~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs 412 (1019)
+...++-|+|+|+ +++|++++. +.+..|.+.......... .........+.+++++..+ +++++.
T Consensus 38 ~~~~~s~la~s~d-~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~------------~v~~a~ 103 (365)
T d1jofa_ 38 QDEPISWMTFDHE-RKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAI------------FLLAAK 103 (365)
T ss_dssp TTCCCSEEEECTT-SSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEE------------EEEECS
T ss_pred CCCCCCEEEEcCC-CCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEE------------EEEEec
Confidence 4445778999997 677776654 568888775444333221 1122334566777777421 111111
Q ss_pred -CCCcEEEEE------------ccCCCeEEEE----EccccccEeEEEEecCCCEEEEEEc-CCeEEEEECCCCceEEEE
Q psy307 413 -MDCRVKLWE------------VYKEHRCVRT----YYGHRQAVRDICFNNTGTNFISAGY-DRYLKLWDTESGECISRF 474 (1019)
Q Consensus 413 -~Dg~I~IWD------------l~~~~~~~~~----l~~H~~~V~sl~fspdg~~l~S~s~-Dg~I~lWDl~t~~~i~~~ 474 (1019)
..+.|..+. +......-.. -......+.++.|+|+|+++++++. ...|.+|+......+...
T Consensus 104 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~ 183 (365)
T d1jofa_ 104 QPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELV 183 (365)
T ss_dssp STTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred CCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeec
Confidence 123343333 3222211111 1122334788999999999888765 357888775433221111
Q ss_pred ecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE-ecCCeEEEEEccCcccccc--eeEEec
Q psy307 475 TSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ-SMDNKILIFSALNRFKLNR--KKTFEG 551 (1019)
Q Consensus 475 ~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg-s~Dg~I~iwd~~~~~~~~~--~~~l~g 551 (1019)
. . ............++|+|+++++.+. ..+++|.+|+......... .....-
T Consensus 184 ~------~-------------------~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~ 238 (365)
T d1jofa_ 184 G------S-------------------VDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL 238 (365)
T ss_dssp E------E-------------------EECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES
T ss_pred c------c-------------------eeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecc
Confidence 0 0 0001122345668889999887554 4678999999875432111 111110
Q ss_pred ------------cccccceEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCceeeee------eccCCCEEEEEEcC
Q psy307 552 ------------HMVAGYACSLDFSPDMSYLISGDA------DGKCYIWDWKTTKLFKKW------KAHDGVCISTLWHP 607 (1019)
Q Consensus 552 ------------h~~~~~V~~v~fspdg~~Lasgs~------DG~I~IWDl~t~~~l~~l------~~h~~~V~sl~~sp 607 (1019)
.........+.++|||++|+++.. .+.|..|++.....+... ........+++++|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p 318 (365)
T d1jofa_ 239 IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCP 318 (365)
T ss_dssp SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECT
T ss_pred ccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecC
Confidence 001123567899999999887642 234777776543222211 11233457799998
Q ss_pred -CCCcEEEEEeCCCcEEEE
Q psy307 608 -HEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 608 -~~~~~l~s~s~Dg~I~iw 625 (1019)
+|..++++...++.|.+|
T Consensus 319 ~~G~~l~va~~~s~~v~v~ 337 (365)
T d1jofa_ 319 WSDEWMAITDDQEGWLEIY 337 (365)
T ss_dssp TCTTEEEEECSSSCEEEEE
T ss_pred CCCCEEEEEeCCCCeEEEE
Confidence 564344555677888776
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.48 E-value=6.2e-05 Score=80.75 Aligned_cols=233 Identities=9% Similarity=0.071 Sum_probs=137.5
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC-
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD- 414 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D- 414 (1019)
..+..++|.++ |++.++-...+.|..|+... ................++++++| .++++...+
T Consensus 40 ~~lEG~~~D~~-G~Ly~~D~~~g~I~ri~p~g-~~~~~~~~~~~~~p~gla~~~dG--------------~l~va~~~~~ 103 (319)
T d2dg1a1 40 LQLEGLNFDRQ-GQLFLLDVFEGNIFKINPET-KEIKRPFVSHKANPAAIKIHKDG--------------RLFVCYLGDF 103 (319)
T ss_dssp CCEEEEEECTT-SCEEEEETTTCEEEEECTTT-CCEEEEEECSSSSEEEEEECTTS--------------CEEEEECTTS
T ss_pred cCcEeCEECCC-CCEEEEECCCCEEEEEECCC-CeEEEEEeCCCCCeeEEEECCCC--------------CEEEEecCCC
Confidence 34568999986 67888888899999998743 33344444455667889999988 455544332
Q ss_pred -CcEEEEEccCCCeEEEEEccc---cccEeEEEEecCCCEEEEEEcC------CeEEEEECCCCceEEEEecCCceEEEE
Q psy307 415 -CRVKLWEVYKEHRCVRTYYGH---RQAVRDICFNNTGTNFISAGYD------RYLKLWDTESGECISRFTSRKVAYCVK 484 (1019)
Q Consensus 415 -g~I~IWDl~~~~~~~~~l~~H---~~~V~sl~fspdg~~l~S~s~D------g~I~lWDl~t~~~i~~~~~~~~v~~v~ 484 (1019)
....++.+......+.....+ ....+.+++.++|+..++.... +.+..++...+.......
T Consensus 104 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~--------- 174 (319)
T d2dg1a1 104 KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--------- 174 (319)
T ss_dssp SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE---------
T ss_pred ccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee---------
Confidence 233344433332222222222 2346788999999866553221 112222222111110000
Q ss_pred EecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEE-EEEecCCeEEEEEccCccccc-ceeE--EeccccccceEE
Q psy307 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWL-ACQSMDNKILIFSALNRFKLN-RKKT--FEGHMVAGYACS 560 (1019)
Q Consensus 485 ~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~L-asgs~Dg~I~iwd~~~~~~~~-~~~~--l~gh~~~~~V~~ 560 (1019)
.......++|+|+++.| ++-+..+.|..|++....... .... ............
T Consensus 175 ----------------------~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdG 232 (319)
T d2dg1a1 175 ----------------------NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDS 232 (319)
T ss_dssp ----------------------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEE
T ss_pred ----------------------ccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceee
Confidence 01223468899998865 555678899999986432111 1111 111111123567
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec------cCCCEEEEEEcCCCCcEEEEE
Q psy307 561 LDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA------HDGVCISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 561 v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~------h~~~V~sl~~sp~~~~~l~s~ 616 (1019)
+++.++|++.++....|.|.+|| ..|+.+..+.. +...+++++|.+....++++.
T Consensus 233 l~vD~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 233 CCIDSDDNLYVAMYGQGRVLVFN-KRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp EEEBTTCCEEEEEETTTEEEEEC-TTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred eeEcCCCCEEEEEcCCCEEEEEC-CCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence 99999999888888899999999 47888887753 334578999998775444443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.47 E-value=5.2e-05 Score=79.58 Aligned_cols=236 Identities=13% Similarity=0.197 Sum_probs=148.7
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeee------ccCCCCeEEEEEcCCCCcEEEE-eeCCCeEEEEecC
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTW------EGHTKGISAIRWFPKSAHLLLS-CSMDCRVKLWEVY 366 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l------~gH~~~V~~i~fspd~g~lLaS-gs~Dg~I~IWdl~ 366 (1019)
.+++|+.+++-.....|++++..+. .+..+ .+....-..+++.++.+..+++ .+.++.|.+++.
T Consensus 30 vd~dg~i~VaD~~n~rI~v~d~~G~--------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~- 100 (279)
T d1q7fa_ 30 VNAQNDIIVADTNNHRIQIFDKEGR--------FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ- 100 (279)
T ss_dssp ECTTCCEEEEEGGGTEEEEECTTSC--------EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred EcCCCCEEEEECCCCEEEEEeCCCC--------EEEEecccCCCcccccccccccccccccccceeccCCccccccccc-
Confidence 4567888887666677888865432 12222 1122234556666654555544 445567777775
Q ss_pred CCcEEEEEec-ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEE--ccccccEeEEE
Q psy307 367 KERRCVRTYY-GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY--YGHRQAVRDIC 443 (1019)
Q Consensus 367 ~~~~~~~~~~-gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l--~~H~~~V~sl~ 443 (1019)
.+.....+. ........+++.++| .++++....+.+.+++. .+..+..+ ..+......++
T Consensus 101 -~g~~~~~~~~~~~~~p~~~avd~~G--------------~i~v~~~~~~~~~~~~~--~g~~~~~~g~~~~~~~~~~i~ 163 (279)
T d1q7fa_ 101 -YGQFVRKFGATILQHPRGVTVDNKG--------------RIIVVECKVMRVIIFDQ--NGNVLHKFGCSKHLEFPNGVV 163 (279)
T ss_dssp -TSCEEEEECTTTCSCEEEEEECTTS--------------CEEEEETTTTEEEEECT--TSCEEEEEECTTTCSSEEEEE
T ss_pred -cccceeecCCCcccccceeccccCC--------------cEEEEeeccceeeEecc--CCceeecccccccccccceee
Confidence 334444442 334556778887777 46666666677777775 44455544 44567788899
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEE
Q psy307 444 FNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWL 523 (1019)
Q Consensus 444 fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~L 523 (1019)
+.++++.+++....+.|.+||.. |+.+.++.... .......+++.++|+.+
T Consensus 164 ~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g----------------------------~~~~P~giavD~~G~i~ 214 (279)
T d1q7fa_ 164 VNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEG----------------------------ITNYPIGVGINSNGEIL 214 (279)
T ss_dssp ECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTT----------------------------TSCSEEEEEECTTCCEE
T ss_pred eccceeEEeeeccccceeeeecC-Cceeeeecccc----------------------------cccCCcccccccCCeEE
Confidence 99999888888888999999964 45544442211 11234568889999877
Q ss_pred EEEec-CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q psy307 524 ACQSM-DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKL 589 (1019)
Q Consensus 524 asgs~-Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~ 589 (1019)
++-+. ++.|.+|+.... .+..+...........+++.|||.+++ ++.+++|++|...+..+
T Consensus 215 Vad~~~~~~v~~f~~~G~----~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 215 IADNHNNFNLTIFTQDGQ----LISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp EEECSSSCEEEEECTTSC----EEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred EEECCCCcEEEEECCCCC----EEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence 77554 457999986532 233343333234578899999997655 55789999999876543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.33 E-value=0.00029 Score=74.42 Aligned_cols=227 Identities=10% Similarity=0.052 Sum_probs=140.9
Q ss_pred EEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEE
Q psy307 340 AIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKL 419 (1019)
Q Consensus 340 ~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~I 419 (1019)
+..|.+.++.+..+--..+.|..||..+....... ....+.++++.++| .+++ ++.+ .|.+
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~---~~~~~~~i~~~~dg--------------~l~v-a~~~-gl~~ 82 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKTVHA---LPFMGSALAKISDS--------------KQLI-ASDD-GLFL 82 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE---CSSCEEEEEEEETT--------------EEEE-EETT-EEEE
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEE---CCCCcEEEEEecCC--------------CEEE-EEeC-ccEE
Confidence 45688777777777667889999998554332222 23457778777776 3444 4444 5888
Q ss_pred EEccCCCeEEEEEc--c--ccccEeEEEEecCCCEEEEEEcC----CeEEEEECCCCceEEEEecCCceEEEEEecCCCe
Q psy307 420 WEVYKEHRCVRTYY--G--HRQAVRDICFNNTGTNFISAGYD----RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDK 491 (1019)
Q Consensus 420 WDl~~~~~~~~~l~--~--H~~~V~sl~fspdg~~l~S~s~D----g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~ 491 (1019)
+|..+.. ...... . ....++.+.+.|+|+..++...+ +.-.+|.+..++.......-
T Consensus 83 ~d~~tg~-~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~-------------- 147 (295)
T d2ghsa1 83 RDTATGV-LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI-------------- 147 (295)
T ss_dssp EETTTCC-EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE--------------
T ss_pred eecccce-eeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc--------------
Confidence 8884433 222221 1 12357889999999876655432 22344444444332222111
Q ss_pred eeeccCCCceeeeCCCCCcccEEEEcCCCCEE-EEEecCCeEEEEEccCccc--ccceeE-EeccccccceEEEEEcCCC
Q psy307 492 QHLDIPVDMKYIADPTMHSMPAVTSSPNNKWL-ACQSMDNKILIFSALNRFK--LNRKKT-FEGHMVAGYACSLDFSPDM 567 (1019)
Q Consensus 492 ~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~L-asgs~Dg~I~iwd~~~~~~--~~~~~~-l~gh~~~~~V~~v~fspdg 567 (1019)
.....++++++++.+ ++-+..+.|..|++..... ...... .......+..-.+++..+|
T Consensus 148 -----------------~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~G 210 (295)
T d2ghsa1 148 -----------------SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG 210 (295)
T ss_dssp -----------------SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS
T ss_pred -----------------CCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCC
Confidence 123457778888755 4556678899998753211 111111 1111223557789999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEc-CCCCcEEEEEeC
Q psy307 568 SYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWH-PHEPSKVVTAGW 618 (1019)
Q Consensus 568 ~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~s-p~~~~~l~s~s~ 618 (1019)
++.++.-..|.|..|| ..|+.+..+......+++++|- ++...+++|...
T Consensus 211 nlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 211 HIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp CEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CEEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence 9888877788999999 5788999888766678999995 565566676554
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.33 E-value=7.8e-05 Score=81.58 Aligned_cols=208 Identities=7% Similarity=-0.031 Sum_probs=116.8
Q ss_pred cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEc-cccccEeEEEEecCCCEEEEEE-
Q psy307 378 HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYY-GHRQAVRDICFNNTGTNFISAG- 455 (1019)
Q Consensus 378 h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~-~H~~~V~sl~fspdg~~l~S~s- 455 (1019)
....+..|+|++++ ++|++++. +.+..|.+........... ........++++++++.++...
T Consensus 38 ~~~~~s~la~s~d~--------------~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a 102 (365)
T d1jofa_ 38 QDEPISWMTFDHER--------------KNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAA 102 (365)
T ss_dssp TTCCCSEEEECTTS--------------SEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEEC
T ss_pred CCCCCCEEEEcCCC--------------CEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEe
Confidence 34456678999988 56666544 5688888765554433321 2223455668888988543332
Q ss_pred -c-CCeEEEEECCC-CceEEEEec--CCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec-C
Q psy307 456 -Y-DRYLKLWDTES-GECISRFTS--RKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM-D 529 (1019)
Q Consensus 456 -~-Dg~I~lWDl~t-~~~i~~~~~--~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~-D 529 (1019)
+ .++|..+.+.. +.....+.. ........ ..........+.++.++|+|+++++.+. .
T Consensus 103 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~ 166 (365)
T d1jofa_ 103 KQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNV----------------QNYEYQENTGIHGMVFDPTETYLYSADLTA 166 (365)
T ss_dssp SSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEE----------------EEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred cCCCCEEEEeEccCCCCcceeEeeeecceecCcc----------------cCcccCCCCcceEEEECCCCCEEEEeeCCC
Confidence 2 35666555432 222111111 11111000 0011112223568999999998888764 4
Q ss_pred CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeee--e------------
Q psy307 530 NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD-ADGKCYIWDWKTTKLFKKW--K------------ 594 (1019)
Q Consensus 530 g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl~t~~~l~~l--~------------ 594 (1019)
+.|.+|+......+.................++|+|+|+++.+.. .+++|.+|++..++..... .
T Consensus 167 d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (365)
T d1jofa_ 167 NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDR 246 (365)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCB
T ss_pred CEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccccccc
Confidence 588888866443333333333322234578899999999885554 6789999998765432211 1
Q ss_pred -----ccCCCEEEEEEcCCCCcEEEEE
Q psy307 595 -----AHDGVCISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 595 -----~h~~~V~sl~~sp~~~~~l~s~ 616 (1019)
.+......+.++|+|..++++.
T Consensus 247 ~~~~~~~~~~~~~i~~spdG~~lyvsn 273 (365)
T d1jofa_ 247 DPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred ccccccccCCccceEECCCCCEEEEEc
Confidence 1112356788999995444443
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.33 E-value=6.6e-05 Score=77.47 Aligned_cols=205 Identities=13% Similarity=0.049 Sum_probs=112.8
Q ss_pred eEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcccccc
Q psy307 359 RVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQA 438 (1019)
Q Consensus 359 ~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~ 438 (1019)
.|.|-|.. + .-.+.+..+...+...+|||||+ .+.++....+...+|.....+.....+..+.+.
T Consensus 20 ~l~i~d~d-G-~~~~~l~~~~~~~~sP~wSPDGk-------------~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (269)
T d2hqsa1 20 ELRVSDYD-G-YNQFVVHRSPQPLMSPAWSPDGS-------------KLAYVTFESGRSALVIQTLANGAVRQVASFPRH 84 (269)
T ss_dssp EEEEEETT-S-CSCEEEEEESSCEEEEEECTTSS-------------EEEEEECTTSSCEEEEEETTTCCEEEEECCSSC
T ss_pred EEEEEcCC-C-CCcEEEecCCCceeeeEECCCCC-------------EEEEEEeeccCcceeeeecccCceeEEeeeecc
Confidence 45666653 2 22334445567788999999995 333344444444444443444455566677888
Q ss_pred EeEEEEecCCCEEEEEEcC-Ce--EEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEE
Q psy307 439 VRDICFNNTGTNFISAGYD-RY--LKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVT 515 (1019)
Q Consensus 439 V~sl~fspdg~~l~S~s~D-g~--I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~ 515 (1019)
.....|+|+|+.++..+.. +. +..+.............. .......
T Consensus 85 ~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~ 133 (269)
T d2hqsa1 85 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR-------------------------------SNNTEPT 133 (269)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCS-------------------------------SCEEEEE
T ss_pred cccceecCCCCeeeEeeecCCccceeecccccccceeeeecc-------------------------------ccccccc
Confidence 8899999999998876543 22 222222222211111111 1122234
Q ss_pred EcCCCCEEEEE-ecCC--eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCce
Q psy307 516 SSPNNKWLACQ-SMDN--KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG---KCYIWDWKTTKL 589 (1019)
Q Consensus 516 ~spdg~~Lasg-s~Dg--~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG---~I~IWDl~t~~~ 589 (1019)
+++++..++.. ..+| .|.+.++..... ..+.... .......|+|+|++++..+.++ .+.+.|..++..
T Consensus 134 ~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~----~~~~~~~--~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~ 207 (269)
T d2hqsa1 134 WFPDSQNLAFTSDQAGRPQVYKVNINGGAP----QRITWEG--SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV 207 (269)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTSSCC----EECCCSS--SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred cccccccceecccccCCceEeeeecccccc----eeeeccc--ccccccccccccceeEEEeecCCceeeeEeecccccc
Confidence 45555554443 3455 455555544321 2222222 4567789999999988776554 455555555443
Q ss_pred eeeeeccCCCEEEEEEcCCCCcEEEEEe
Q psy307 590 FKKWKAHDGVCISTLWHPHEPSKVVTAG 617 (1019)
Q Consensus 590 l~~l~~h~~~V~sl~~sp~~~~~l~s~s 617 (1019)
.+..+.+......|+|||..++++..
T Consensus 208 --~~~~~~~~~~~p~~SPDG~~i~f~s~ 233 (269)
T d2hqsa1 208 --QVLSSTFLDETPSLAPNGTMVIYSSS 233 (269)
T ss_dssp --EECCCSSSCEEEEECTTSSEEEEEEE
T ss_pred --eEeecCccccceEECCCCCEEEEEEc
Confidence 33344556678899999964444443
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.25 E-value=5.9e-05 Score=80.10 Aligned_cols=227 Identities=8% Similarity=-0.025 Sum_probs=140.1
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
+.+++|+.|++...++.|..++.... ...+....+.+.+++|.|+ +.++++...++.+.+|+........
T Consensus 34 Av~pdG~l~vt~~~~~~I~~i~p~g~---------~~~~~~~~~~~~gla~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~ 103 (302)
T d2p4oa1 34 ASAPDGTIFVTNHEVGEIVSITPDGN---------QQIHATVEGKVSGLAFTSN-GDLVATGWNADSIPVVSLVKSDGTV 103 (302)
T ss_dssp EECTTSCEEEEETTTTEEEEECTTCC---------EEEEEECSSEEEEEEECTT-SCEEEEEECTTSCEEEEEECTTSCE
T ss_pred EECCCCCEEEEeCCCCEEEEEeCCCC---------EEEEEcCCCCcceEEEcCC-CCeEEEecCCceEEEEEecccccce
Confidence 45789999999888887776654422 3344556678999999996 7788888888888888764332222
Q ss_pred EEe--cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcc---------ccccEeE
Q psy307 373 RTY--YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG---------HRQAVRD 441 (1019)
Q Consensus 373 ~~~--~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~---------H~~~V~s 441 (1019)
..+ .........+.+.+++ .++++.+.++.+..++.......+..... .......
T Consensus 104 ~~~~~~~~~~~~n~i~~~~~g--------------~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng 169 (302)
T d2p4oa1 104 ETLLTLPDAIFLNGITPLSDT--------------QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG 169 (302)
T ss_dssp EEEEECTTCSCEEEEEESSSS--------------EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred eeccccCCccccceeEEccCC--------------CEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccc
Confidence 222 2234557788888887 67777788888888887443333322221 1123455
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCC
Q psy307 442 ICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK 521 (1019)
Q Consensus 442 l~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~ 521 (1019)
+.++. +..+++.+..+.|..++........... .. ........++++++|+
T Consensus 170 i~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~--------------------------~~--~~~~~pdgia~d~dG~ 220 (302)
T d2p4oa1 170 LKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPE--------------------------IF--VEQTNIDDFAFDVEGN 220 (302)
T ss_dssp EEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCE--------------------------EE--EESCCCSSEEEBTTCC
T ss_pred ccccC-CceeeecCCCCeEEeccccccccccccc--------------------------cc--cCCCCCcceEECCCCC
Confidence 55543 2344555566777777765432111000 00 0112345689999999
Q ss_pred EEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEE---cCCCCEEEEEeCC
Q psy307 522 WLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDF---SPDMSYLISGDAD 576 (1019)
Q Consensus 522 ~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~f---spdg~~Lasgs~D 576 (1019)
++++...+++|..++..... ............+++++| ++|++.|+.++..
T Consensus 221 l~va~~~~~~V~~i~p~G~~----~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 221 LYGATHIYNSVVRIAPDRST----TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp EEEECBTTCCEEEECTTCCE----EEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred EEEEEcCCCcEEEECCCCCE----EEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 88888889999999876431 111111111244789999 6788888766554
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.20 E-value=0.00029 Score=75.14 Aligned_cols=219 Identities=12% Similarity=0.104 Sum_probs=117.6
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccC---ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHR---QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM 413 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~---~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~ 413 (1019)
.-..++|.++ +.+++++...+.|...+.......+....... ...+++++.++|...++.....-..... .....
T Consensus 72 ~P~Gl~~~~d-g~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~-~~~~~ 149 (314)
T d1pjxa_ 72 IPAGCQCDRD-ANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY-TRSMQ 149 (314)
T ss_dssp CEEEEEECSS-SSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC-CBTTS
T ss_pred cceeEEEeCC-CCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccc-cceec
Confidence 3567999996 66667777777788888743322211111111 1357889999885333221110000000 00000
Q ss_pred CCcEEEEEccCCCeEEEEEccccccEeEEEEecCCC-----EEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecC
Q psy307 414 DCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT-----NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPD 488 (1019)
Q Consensus 414 Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~-----~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~ 488 (1019)
...=+||.+...+...... ..-..-+.++|++++. .+++-+..+.|..||+.....+.... +-..
T Consensus 150 ~~~G~v~~~~~dg~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~-------~~~~-- 219 (314)
T d1pjxa_ 150 EKFGSIYCFTTDGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKK-------VWGH-- 219 (314)
T ss_dssp SSCEEEEEECTTSCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEE-------EEEE--
T ss_pred cCCceEEEEeecCceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceee-------EEEE--
Confidence 1112334333333333222 2233446789998764 34444566778877764332221100 0000
Q ss_pred CCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCC
Q psy307 489 EDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMS 568 (1019)
Q Consensus 489 ~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~ 568 (1019)
+..........+++..+|++.++....+.|.+||...+.. ...+.... ..+++++|.||++
T Consensus 220 --------------~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~---~~~i~~p~--~~~t~~afg~d~~ 280 (314)
T d1pjxa_ 220 --------------IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP---KMRIRCPF--EKPSNLHFKPQTK 280 (314)
T ss_dssp --------------CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC---SEEEECSS--SCEEEEEECTTSS
T ss_pred --------------ccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEE---EEEEECCC--CCEEEEEEeCCCC
Confidence 0000111234688899999888888899999999876532 23333322 4578999999997
Q ss_pred E-EEEEeCCCeEEEEeCCC
Q psy307 569 Y-LISGDADGKCYIWDWKT 586 (1019)
Q Consensus 569 ~-Lasgs~DG~I~IWDl~t 586 (1019)
. .++.+.+|+|...++..
T Consensus 281 ~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 281 TIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEEETTTTEEEEEECSS
T ss_pred EEEEEECCCCcEEEEECCC
Confidence 4 45666778888888753
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.07 E-value=9.4e-05 Score=76.64 Aligned_cols=193 Identities=9% Similarity=0.092 Sum_probs=119.9
Q ss_pred cEeEEEEcCCCCceeEEEeecCCCCcEEEE-EeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCe
Q psy307 381 AVRDICFNNTGTNFISAIRWFPKSAHLLLS-CSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRY 459 (1019)
Q Consensus 381 ~V~~i~fspdg~~~vs~i~~~p~~~~~L~s-gs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~ 459 (1019)
.-.+|++.++| ++.++ .+..+.|..++............+. .....++++++|+.+++....+.
T Consensus 15 ~P~~vavd~dG--------------~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~gvav~~~g~i~v~d~~~~~ 79 (260)
T d1rwia_ 15 SPSGVAVDSAG--------------NVYVTSEGMYGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDFNNRV 79 (260)
T ss_dssp CEEEEEECTTC--------------CEEEEECSSSCEEEEEC----CEEECCCCSC-CSCCCEEECTTCCEEEEETTTEE
T ss_pred CCCEEEEcCCC--------------CEEEEEcCCCCEEEEEcCCCceEEEeccCCc-cCceEEEEcCCCCEEEeeeeece
Confidence 34678888877 44444 4555777777764443333333322 33567799999987777666666
Q ss_pred EEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccC
Q psy307 460 LKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALN 539 (1019)
Q Consensus 460 I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~ 539 (1019)
+++++..++..+.... .......+++.++++++++...++.+..++...
T Consensus 80 i~~~~~~~~~~~~~~~-------------------------------~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~ 128 (260)
T d1rwia_ 80 VTLAAGSNNQTVLPFD-------------------------------GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS 128 (260)
T ss_dssp EEECTTCSCCEECCCC-------------------------------SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTC
T ss_pred eeeeeeccceeeeeee-------------------------------eeeecccccccccceeEeecccccccccccccc
Confidence 6665544433221111 112345677888888888777778888887655
Q ss_pred cccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCC
Q psy307 540 RFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619 (1019)
Q Consensus 540 ~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~D 619 (1019)
.... .....+ ......++++|+|+++++...++.|..+|.............-....++++.+++ .++++....
T Consensus 129 ~~~~--~~~~~~---~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g-~l~vsd~~~ 202 (260)
T d1rwia_ 129 KTQT--VLPFTG---LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNT 202 (260)
T ss_dssp SSCE--ECCCCS---CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-CEEEEETTT
T ss_pred ceee--eeeecc---cCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeee-eeeeeecCC
Confidence 4211 111111 1345689999999988888888999999987654443333444567899999987 577777777
Q ss_pred CcEEEE
Q psy307 620 AATAKV 625 (1019)
Q Consensus 620 g~I~iw 625 (1019)
+.|..+
T Consensus 203 ~~i~~~ 208 (260)
T d1rwia_ 203 NQVVKL 208 (260)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 777665
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.03 E-value=0.00049 Score=73.46 Aligned_cols=236 Identities=12% Similarity=0.120 Sum_probs=130.0
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCC--CeEEEEecCCCcE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMD--CRVKLWEVYKERR 370 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~D--g~I~IWdl~~~~~ 370 (1019)
.+|.+|+.+++-...+.|.-++.... .....+.........+++.++ |.++++...+ ....++.+.....
T Consensus 46 ~~D~~G~Ly~~D~~~g~I~ri~p~g~-------~~~~~~~~~~~~p~gla~~~d-G~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 46 NFDRQGQLFLLDVFEGNIFKINPETK-------EIKRPFVSHKANPAAIKIHKD-GRLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp EECTTSCEEEEETTTCEEEEECTTTC-------CEEEEEECSSSSEEEEEECTT-SCEEEEECTTSSSCCEEEEECTTSC
T ss_pred EECCCCCEEEEECCCCEEEEEECCCC-------eEEEEEeCCCCCeeEEEECCC-CCEEEEecCCCccceeEEEEcCCCc
Confidence 46788998888777777766654321 223334455567889999996 6666654332 3333443322222
Q ss_pred EEEEeccc---CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC----CCcEEEEEccCCCeEEEEEccccccEeEEE
Q psy307 371 CVRTYYGH---RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM----DCRVKLWEVYKEHRCVRTYYGHRQAVRDIC 443 (1019)
Q Consensus 371 ~~~~~~gh---~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~----Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~ 443 (1019)
.+.....+ .....++.+.++|. +.++... +..-.+|-+...+..+..+...-...+.|+
T Consensus 118 ~~~~~~~~~~~~~~~nd~~~d~~G~--------------l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia 183 (319)
T d2dg1a1 118 NLQDIIEDLSTAYCIDDMVFDSKGG--------------FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIA 183 (319)
T ss_dssp SCEEEECSSSSCCCEEEEEECTTSC--------------EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEE
T ss_pred eeeeeccCCCcccCCcceeEEeccc--------------eeecccccccccCcceeEEEecccceeEEEeeccceeeeee
Confidence 22222222 23477888888884 3333211 112223333333333333333334567899
Q ss_pred EecCCCEEE-EEEcCCeEEEEECCCC-ceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCC
Q psy307 444 FNNTGTNFI-SAGYDRYLKLWDTESG-ECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK 521 (1019)
Q Consensus 444 fspdg~~l~-S~s~Dg~I~lWDl~t~-~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~ 521 (1019)
|+|+++.|+ +-+..+.|..||+... ........ .. ............+++.++|+
T Consensus 184 ~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~-----~~------------------~~~~~~~~~PdGl~vD~~G~ 240 (319)
T d2dg1a1 184 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGA-----TI------------------PYYFTGHEGPDSCCIDSDDN 240 (319)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE-----EE------------------EEECCSSSEEEEEEEBTTCC
T ss_pred eccccceEEEecccCCceEEEEEcCCCceeccccc-----ee------------------eeccCCccceeeeeEcCCCC
Confidence 999998764 4456788999987542 21111110 00 00001111233588899999
Q ss_pred EEEEEecCCeEEEEEccCcccccceeEEecc--ccccceEEEEEcCCCCEEEEEeC
Q psy307 522 WLACQSMDNKILIFSALNRFKLNRKKTFEGH--MVAGYACSLDFSPDMSYLISGDA 575 (1019)
Q Consensus 522 ~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh--~~~~~V~~v~fspdg~~Lasgs~ 575 (1019)
+.++....+.|.+||.. +..+..+. +.+. .....+++++|.|++..+++.+.
T Consensus 241 l~Va~~~~g~V~~~~p~-G~~l~~i~-~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 241 LYVAMYGQGRVLVFNKR-GYPIGQIL-IPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp EEEEEETTTEEEEECTT-SCEEEEEE-CTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred EEEEEcCCCEEEEECCC-CcEEEEEe-CCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 88888889999999974 43222221 1111 11134678999998877766544
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=0.0019 Score=72.63 Aligned_cols=260 Identities=12% Similarity=0.087 Sum_probs=132.4
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccE-----------------eEEEEcCCCCce
Q psy307 332 EGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAV-----------------RDICFNNTGTNF 394 (1019)
Q Consensus 332 ~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V-----------------~~i~fspdg~~~ 394 (1019)
....+.+....|||++..+.++ . ++.|.+.+...+.....+..+....| ..+-|||||.++
T Consensus 110 ~~~~~~l~~~~wSPDG~~iafv-~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~i 187 (465)
T d1xfda1 110 EVSNAKLQYAGWGPKGQQLIFI-F-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRL 187 (465)
T ss_dssp TCCSCCCSBCCBCSSTTCEEEE-E-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEE
T ss_pred cCCccccceeeeccCCceEEEE-e-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeE
Confidence 3344566778999985544443 3 67788888754433222333322222 456788888766
Q ss_pred eEEEe--------ecCC---C--Cc-----EEEEEeCC--CcEEEEEccCCCeEEEEE-----ccccccEeEEEEecCCC
Q psy307 395 ISAIR--------WFPK---S--AH-----LLLSCSMD--CRVKLWEVYKEHRCVRTY-----YGHRQAVRDICFNNTGT 449 (1019)
Q Consensus 395 vs~i~--------~~p~---~--~~-----~L~sgs~D--g~I~IWDl~~~~~~~~~l-----~~H~~~V~sl~fspdg~ 449 (1019)
+.... ..+. . +. +-..|... ..+.++|+.......... ......+..+.|+++++
T Consensus 188 af~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~ 267 (465)
T d1xfda1 188 AYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK 267 (465)
T ss_dssp EEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE
T ss_pred EEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCe
Confidence 54310 0000 0 00 00011111 135566663332222221 11233477889999987
Q ss_pred EEEEEEc-C---CeEEEEECCCCceEEEEecC--C----ceEEEEEecCCCeeeec--cC----CCceee----------
Q psy307 450 NFISAGY-D---RYLKLWDTESGECISRFTSR--K----VAYCVKFHPDEDKQHLD--IP----VDMKYI---------- 503 (1019)
Q Consensus 450 ~l~S~s~-D---g~I~lWDl~t~~~i~~~~~~--~----~v~~v~~~p~~~~~~~~--~~----~~~~~i---------- 503 (1019)
.++.... + ..|.++|..+|++...+... . ......|.|++....+. .. .....+
T Consensus 268 ~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~ 347 (465)
T d1xfda1 268 VAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS 347 (465)
T ss_dssp EEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred EEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCC
Confidence 6554432 2 25888999999876655421 1 11245677777654321 00 000000
Q ss_pred ------eCCCCCcccE-EEEcCCCCEEEE-EecCC--eEEEEEc--cCcccccceeEEeccccccceEEEEEcCCCCEEE
Q psy307 504 ------ADPTMHSMPA-VTSSPNNKWLAC-QSMDN--KILIFSA--LNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLI 571 (1019)
Q Consensus 504 ------~~~~~~~i~~-v~~spdg~~Las-gs~Dg--~I~iwd~--~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~La 571 (1019)
.....-.|.. +.++.+++.|.. +..++ .-.+|.+ .+.....++.+..... +...++.|||+|++++
T Consensus 348 ~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~--~~~~~~~~S~~~~y~v 425 (465)
T d1xfda1 348 NDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVEN--CTYFSASFSHSMDFFL 425 (465)
T ss_dssp SCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSS--CCCCEEEECTTSSEEE
T ss_pred CceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCC--CCEEEEEECCCCCEEE
Confidence 1111222333 468888777654 43332 3345544 3332221111111111 3355789999999988
Q ss_pred EEeCC---CeEEEEeCCCCceeeeeec
Q psy307 572 SGDAD---GKCYIWDWKTTKLFKKWKA 595 (1019)
Q Consensus 572 sgs~D---G~I~IWDl~t~~~l~~l~~ 595 (1019)
..+.. -.+.+++..+++.+..+..
T Consensus 426 ~~~s~~~~P~~~~~~~~~~~~~~~Le~ 452 (465)
T d1xfda1 426 LKCEGPGVPMVTVHNTTDKKKMFDLET 452 (465)
T ss_dssp EECCSSSSCCEEEEETTTCCEEEEEEC
T ss_pred EEeecCCCCeEEEEECCCCCEEEEEcC
Confidence 54433 4688899888888887753
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=0.00051 Score=77.45 Aligned_cols=289 Identities=9% Similarity=0.016 Sum_probs=138.2
Q ss_pred CCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEe--------eCCCeEEEEecCCCc-EEEEEe
Q psy307 305 PHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSC--------SMDCRVKLWEVYKER-RCVRTY 375 (1019)
Q Consensus 305 ~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSg--------s~Dg~I~IWdl~~~~-~~~~~~ 375 (1019)
..++.+.+++....... ..+..-....-.+....||||+..+|+.. +..+.+.++|+.+.. ..+...
T Consensus 34 ~~~g~i~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~ 109 (465)
T d1xfda1 34 EQKGTVRLWNVETNTST----VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPP 109 (465)
T ss_dssp CSSSCEEEBCGGGCCCE----EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCT
T ss_pred eCCCcEEEEECCCCCEE----EEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCc
Confidence 45667777766533211 11111112334677888999744444432 346788999985432 112122
Q ss_pred cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcccccc-----------------
Q psy307 376 YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQA----------------- 438 (1019)
Q Consensus 376 ~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~----------------- 438 (1019)
......+....|||||..+ .++ .++.|.+.+...+.....+..+..+.
T Consensus 110 ~~~~~~l~~~~wSPDG~~i-------------afv--~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~ 174 (465)
T d1xfda1 110 EVSNAKLQYAGWGPKGQQL-------------IFI--FENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (465)
T ss_dssp TCCSCCCSBCCBCSSTTCE-------------EEE--ETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred cCCccccceeeeccCCceE-------------EEE--ecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccc
Confidence 2334456667888888532 222 24566666653332222222222111
Q ss_pred EeEEEEecCCCEEEEEEcC-CeEEEEECCC--C---ceEEEEecCCceEEEEEecCCCeeeeccCCCcee-eeC------
Q psy307 439 VRDICFNNTGTNFISAGYD-RYLKLWDTES--G---ECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKY-IAD------ 505 (1019)
Q Consensus 439 V~sl~fspdg~~l~S~s~D-g~I~lWDl~t--~---~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~-i~~------ 505 (1019)
-.++.|||||++|+....| ..|..+.+.. + .....+.-...- .-+|.....++++...... ...
T Consensus 175 ~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G---~~np~~~l~v~d~~~~~~~~~~~~~~~~~ 251 (465)
T d1xfda1 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAG---SENPSISLHVIGLNGPTHDLEMMPPDDPR 251 (465)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTT---SCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred cceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccC---CCCCceeEEEEecCCCcEEEEEeccCcCc
Confidence 1467899999999987654 4455554321 1 111111110000 0000001111222111111 111
Q ss_pred CCCCcccEEEEcCCCCEEEEEec-C---CeEEEEEccCcccccceeEEeccccccce----EEEEEcCCCCEEE---EEe
Q psy307 506 PTMHSMPAVTSSPNNKWLACQSM-D---NKILIFSALNRFKLNRKKTFEGHMVAGYA----CSLDFSPDMSYLI---SGD 574 (1019)
Q Consensus 506 ~~~~~i~~v~~spdg~~Lasgs~-D---g~I~iwd~~~~~~~~~~~~l~gh~~~~~V----~~v~fspdg~~La---sgs 574 (1019)
....-++.+.|+|++++++.... + ..|.++|..++... ..+.... .++| ....|+|||+.++ ...
T Consensus 252 ~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~---~~~~e~~-~~wv~~~~~~p~~~~dg~~~~fi~~se 327 (465)
T d1xfda1 252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT---KKHEDES-EAWLHRQNEEPVFSKDGRKFFFIRAIP 327 (465)
T ss_dssp GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE---EEEEEEC-SSCCCCCCCCCEECTTSCSEEEEEEEC
T ss_pred cccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEE---EEEEEcC-CceEeccCCceeEccCCCeeEEEEeee
Confidence 11223567899999987666543 2 26788888876332 2222111 1222 2457999998432 222
Q ss_pred CCC--eEEEEeCC------CCceeeeeeccCCCEEEE-EEcCCCCcEEEEEeCC
Q psy307 575 ADG--KCYIWDWK------TTKLFKKWKAHDGVCIST-LWHPHEPSKVVTAGWD 619 (1019)
Q Consensus 575 ~DG--~I~IWDl~------t~~~l~~l~~h~~~V~sl-~~sp~~~~~l~s~s~D 619 (1019)
.+| .++..++. .++.+..+....-.|..+ .|.+++....+++..+
T Consensus 328 ~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~ 381 (465)
T d1xfda1 328 QGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTED 381 (465)
T ss_dssp CSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSS
T ss_pred ecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCC
Confidence 333 34333321 344445555444456665 5888776555565544
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.45 E-value=0.0016 Score=66.74 Aligned_cols=219 Identities=12% Similarity=0.090 Sum_probs=108.1
Q ss_pred EcCC--CCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC-----
Q psy307 343 WFPK--SAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC----- 415 (1019)
Q Consensus 343 fspd--~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg----- 415 (1019)
.+|+ +..+++++ +|.|.+.|+.. ++ .+.+..+...+...+|||||+. +.++...++
T Consensus 6 ~sPdi~G~~v~f~~--~~dl~~~d~~~-g~-~~~Lt~~~~~~~~p~~SPDG~~-------------iaf~~~~~~~~~~~ 68 (281)
T d1k32a2 6 LNPDIHGDRIIFVC--CDDLWEHDLKS-GS-TRKIVSNLGVINNARFFPDGRK-------------IAIRVMRGSSLNTA 68 (281)
T ss_dssp EEEEEETTEEEEEE--TTEEEEEETTT-CC-EEEEECSSSEEEEEEECTTSSE-------------EEEEEEESTTCCEE
T ss_pred cCCCCCCCEEEEEe--CCcEEEEECCC-CC-EEEEecCCCcccCEEECCCCCE-------------EEEEEeeCCCCCce
Confidence 4675 55544443 45677778843 33 3456667778899999999953 222332222
Q ss_pred cEEEEEccCCCeEEEEEc------cccccEeEEEEecCCCEEEEEEcC------CeEEEEECCCCceEEEEecCCceEEE
Q psy307 416 RVKLWEVYKEHRCVRTYY------GHRQAVRDICFNNTGTNFISAGYD------RYLKLWDTESGECISRFTSRKVAYCV 483 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~------~H~~~V~sl~fspdg~~l~S~s~D------g~I~lWDl~t~~~i~~~~~~~~v~~v 483 (1019)
.|.+++. .++...+... ..........|+|+|+.++..... ..+...+...+........ ....
T Consensus 69 ~i~~~~~-~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~- 144 (281)
T d1k32a2 69 DLYFYNG-ENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLG--PATH- 144 (281)
T ss_dssp EEEEEET-TTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSC--SCSE-
T ss_pred EEEEEEe-cCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCC--ccce-
Confidence 2455554 2333222211 122345677899999998865432 2355566555543222111 1111
Q ss_pred EEecCCCeeeeccCC------------Cc----------eeeeCCCCCcccEEEEcCCCCEEEEEecC--CeEEEEEccC
Q psy307 484 KFHPDEDKQHLDIPV------------DM----------KYIADPTMHSMPAVTSSPNNKWLACQSMD--NKILIFSALN 539 (1019)
Q Consensus 484 ~~~p~~~~~~~~~~~------------~~----------~~i~~~~~~~i~~v~~spdg~~Lasgs~D--g~I~iwd~~~ 539 (1019)
.+.+++......... .. ...............++++. .+.....+ ..|.++|+.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g 223 (281)
T d1k32a2 145 ILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDG 223 (281)
T ss_dssp EEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTS
T ss_pred eeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccc-cceecccccccceEEEeCCC
Confidence 222332222210000 00 00011111222233344432 22222233 3677778766
Q ss_pred cccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q psy307 540 RFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFK 591 (1019)
Q Consensus 540 ~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~ 591 (1019)
+.. +.+..+. ...+ ..|||||+.|+.. .+|.|+++|+.+++...
T Consensus 224 ~~~----~~lt~~~-~~~~--~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 224 KDL----RKHTSFT-DYYP--RHLNTDGRRILFS-KGGSIYIFNPDTEKIEK 267 (281)
T ss_dssp CSC----EECCCCC-SSCE--EEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred Cce----EEeecCC-Cccc--ccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence 522 2222221 1223 4689999988764 46889999998887543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.32 E-value=0.048 Score=56.53 Aligned_cols=190 Identities=13% Similarity=0.002 Sum_probs=111.0
Q ss_pred EeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecC
Q psy307 398 IRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSR 477 (1019)
Q Consensus 398 i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~ 477 (1019)
..|++.++.+..+--..+.|.-||.......... ....+.++++.++|..++ ++.+ .|.++|..+++........
T Consensus 23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~---~~~~~~~i~~~~dg~l~v-a~~~-gl~~~d~~tg~~~~l~~~~ 97 (295)
T d2ghsa1 23 PTFDPASGTAWWFNILERELHELHLASGRKTVHA---LPFMGSALAKISDSKQLI-ASDD-GLFLRDTATGVLTLHAELE 97 (295)
T ss_dssp EEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE---CSSCEEEEEEEETTEEEE-EETT-EEEEEETTTCCEEEEECSS
T ss_pred CeEECCCCEEEEEECCCCEEEEEECCCCeEEEEE---CCCCcEEEEEecCCCEEE-EEeC-ccEEeecccceeeEEeeee
Confidence 4455555566666667788888888444332222 245678889998886665 4554 5889999888754322211
Q ss_pred CceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC----CeEEEEEccCcccccceeEEeccc
Q psy307 478 KVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD----NKILIFSALNRFKLNRKKTFEGHM 553 (1019)
Q Consensus 478 ~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D----g~I~iwd~~~~~~~~~~~~l~gh~ 553 (1019)
. ......+..+.+.|+|++.++.... +.-.+|.+.++. ......+.
T Consensus 98 ~--------------------------~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~---~~~~~~~~- 147 (295)
T d2ghsa1 98 S--------------------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK---VTKLFADI- 147 (295)
T ss_dssp T--------------------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE---EEEEEEEE-
T ss_pred c--------------------------CCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCc---EEEEeecc-
Confidence 0 0111234567778888766654322 244566655442 12222222
Q ss_pred cccceEEEEEcCCCCEEEEE-eCCCeEEEEeCCCC------ce--eeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEE
Q psy307 554 VAGYACSLDFSPDMSYLISG-DADGKCYIWDWKTT------KL--FKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAK 624 (1019)
Q Consensus 554 ~~~~V~~v~fspdg~~Lasg-s~DG~I~IWDl~t~------~~--l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~i 624 (1019)
...+.++|+++++.++.+ +..+.|+.+++... +. ...+.+..+...++++..+|. +.++.-..|.|.+
T Consensus 148 --~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~ 224 (295)
T d2ghsa1 148 --SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDR 224 (295)
T ss_dssp --SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEE
T ss_pred --CCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC-EEeeeeCCCceEE
Confidence 346789999999866544 55778988887431 11 112233445678888888883 4444434556655
Q ss_pred E
Q psy307 625 V 625 (1019)
Q Consensus 625 w 625 (1019)
+
T Consensus 225 ~ 225 (295)
T d2ghsa1 225 Y 225 (295)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.10 E-value=0.014 Score=59.17 Aligned_cols=79 Identities=13% Similarity=0.059 Sum_probs=53.6
Q ss_pred CCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc-C-----CeEEEEECCCCceEEEEecC-------Cce
Q psy307 414 DCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY-D-----RYLKLWDTESGECISRFTSR-------KVA 480 (1019)
Q Consensus 414 Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~-D-----g~I~lWDl~t~~~i~~~~~~-------~~v 480 (1019)
+|.|.+.|+. ++. .+.+..+.+.+...+|||||++|+..+. + ..|.+++..+++........ ...
T Consensus 20 ~~dl~~~d~~-~g~-~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~ 97 (281)
T d1k32a2 20 CDDLWEHDLK-SGS-TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFT 97 (281)
T ss_dssp TTEEEEEETT-TCC-EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECS
T ss_pred CCcEEEEECC-CCC-EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccc
Confidence 4567777873 333 3456677788899999999999886543 2 24778888888765432211 234
Q ss_pred EEEEEecCCCeeee
Q psy307 481 YCVKFHPDEDKQHL 494 (1019)
Q Consensus 481 ~~v~~~p~~~~~~~ 494 (1019)
....|+|++..+.+
T Consensus 98 ~~~~~spdg~~l~~ 111 (281)
T d1k32a2 98 DVAGFDPDGNLIIS 111 (281)
T ss_dssp EEEEECTTCCEEEE
T ss_pred cccccCCCCCEEEE
Confidence 57889999987665
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.82 E-value=0.32 Score=49.07 Aligned_cols=223 Identities=9% Similarity=0.007 Sum_probs=126.4
Q ss_pred eccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEE
Q psy307 331 WEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLS 410 (1019)
Q Consensus 331 l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~s 410 (1019)
+..+...+.+|+|.+.++.+..+-..++.|+..++.... ....+......+.++++..-+. ++..+
T Consensus 31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~-~~~v~~~~~~~p~~iAvD~~~~-------------~lY~~ 96 (263)
T d1npea_ 31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-PTTIIRQDLGSPEGIALDHLGR-------------TIFWT 96 (263)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-CEEEECTTCCCEEEEEEETTTT-------------EEEEE
T ss_pred cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC-cEEEEEeccccccEEEEeccCC-------------eEEEe
Confidence 444555688899998766666666778889988885432 2222333334567777765442 44455
Q ss_pred EeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcC-CeEEEE--ECCCCceEEEEecCCceEEEEEec
Q psy307 411 CSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD-RYLKLW--DTESGECISRFTSRKVAYCVKFHP 487 (1019)
Q Consensus 411 gs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~D-g~I~lW--Dl~t~~~i~~~~~~~~v~~v~~~p 487 (1019)
-...+.|.+.++.... ..............++++|...+++..... +..+|| ++.......
T Consensus 97 d~~~~~I~~~~~dg~~-~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~--------------- 160 (263)
T d1npea_ 97 DSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI--------------- 160 (263)
T ss_dssp ETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE---------------
T ss_pred ccCCCEEEEEecCCce-EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCcee---------------
Confidence 5667788888884333 222333334668889999877776644332 222233 332221111
Q ss_pred CCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEE-EecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCC
Q psy307 488 DEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLAC-QSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPD 566 (1019)
Q Consensus 488 ~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Las-gs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspd 566 (1019)
+..........+++.+.++.|.. -...+.|...++..... ...+.+. ....++++.
T Consensus 161 ---------------i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~---~~v~~~~---~~P~~lav~-- 217 (263)
T d1npea_ 161 ---------------LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR---RKVLEGL---QYPFAVTSY-- 217 (263)
T ss_dssp ---------------EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE---EEEEECC---CSEEEEEEE--
T ss_pred ---------------eeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCe---EEEECCC---CCcEEEEEE--
Confidence 11111233456777776666644 45677899888876532 2223332 224567774
Q ss_pred CCEEEEE-eCCCeEEEEeCCCCceeeeeeccC-CCEEEEEEc
Q psy307 567 MSYLISG-DADGKCYIWDWKTTKLFKKWKAHD-GVCISTLWH 606 (1019)
Q Consensus 567 g~~Lasg-s~DG~I~IWDl~t~~~l~~l~~h~-~~V~sl~~s 606 (1019)
+.+|... ...+.|...|..+++.+..+..+. ....++...
T Consensus 218 ~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~ 259 (263)
T d1npea_ 218 GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIA 259 (263)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEe
Confidence 4445444 456789889998888776654222 233344443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.44 E-value=0.57 Score=47.19 Aligned_cols=216 Identities=9% Similarity=-0.040 Sum_probs=118.0
Q ss_pred cCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc---EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEE
Q psy307 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER---RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLL 409 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~---~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~ 409 (1019)
.....+.+++|.+..+.+..+-..++.|..-++.... .....+......+..+++...+ +++..
T Consensus 27 ~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~-------------~~lY~ 93 (266)
T d1ijqa1 27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH-------------SNIYW 93 (266)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT-------------TEEEE
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc-------------ceEEE
Confidence 3455778999998766666665667777777663211 1111122222344555555443 35556
Q ss_pred EEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc--CCeEEEEECCCCceEEEEecCCceEEEEEec
Q psy307 410 SCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY--DRYLKLWDTESGECISRFTSRKVAYCVKFHP 487 (1019)
Q Consensus 410 sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~--Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p 487 (1019)
+-...+.|.+.++. +......+.........++++|...++..... .+.|.-.++.........
T Consensus 94 ~d~~~~~I~v~~~~-g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~------------- 159 (266)
T d1ijqa1 94 TDSVLGTVSVADTK-GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV------------- 159 (266)
T ss_dssp EETTTTEEEEEETT-SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE-------------
T ss_pred EecCCCEEEeEecC-CceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccc-------------
Confidence 66677889999984 44444444555566788899886666554432 234444444332221111
Q ss_pred CCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE-ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCC
Q psy307 488 DEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ-SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPD 566 (1019)
Q Consensus 488 ~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg-s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspd 566 (1019)
.........+++.+.++.|..+ ...+.|...++.+... ..............++++. +
T Consensus 160 -----------------~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~---~~~~~~~~~~~~p~~lav~-~ 218 (266)
T d1ijqa1 160 -----------------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVF-E 218 (266)
T ss_dssp -----------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEEECTTTTSSEEEEEEE-T
T ss_pred -----------------ccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCE---EEEEeCCCcccccEEEEEE-C
Confidence 1112334567777766655444 5667888888865422 2222222212335567765 2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeeeeecc
Q psy307 567 MSYLISGDADGKCYIWDWKTTKLFKKWKAH 596 (1019)
Q Consensus 567 g~~Lasgs~DG~I~IWDl~t~~~l~~l~~h 596 (1019)
+.+..+-..++.|...+..+++....+...
T Consensus 219 ~~ly~td~~~~~I~~~~~~~g~~~~~~~~~ 248 (266)
T d1ijqa1 219 DKVFWTDIINEAIFSANRLTGSDVNLLAEN 248 (266)
T ss_dssp TEEEEEETTTTEEEEEETTTCCCCEEEECS
T ss_pred CEEEEEECCCCeEEEEECCCCcceEEEEcC
Confidence 333334346678888888787766665543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=95.90 E-value=0.44 Score=50.18 Aligned_cols=112 Identities=13% Similarity=0.152 Sum_probs=65.1
Q ss_pred CCCCcEEEEeeCCC-----------eEEEEecCCCcE-EEE-EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEE
Q psy307 345 PKSAHLLLSCSMDC-----------RVKLWEVYKERR-CVR-TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSC 411 (1019)
Q Consensus 345 pd~g~lLaSgs~Dg-----------~I~IWdl~~~~~-~~~-~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sg 411 (1019)
+.++++++.|+.+. .+.+||...+.- ... ....|.......++.++| .+++.|
T Consensus 28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g--------------~i~v~G 93 (387)
T d1k3ia3 28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG--------------QIVVTG 93 (387)
T ss_dssp TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS--------------CEEEEC
T ss_pred eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCC--------------cEEEee
Confidence 44578888877431 367899854321 111 112233333455666777 577777
Q ss_pred eCC-CcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcC------CeEEEEECCCCce
Q psy307 412 SMD-CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD------RYLKLWDTESGEC 470 (1019)
Q Consensus 412 s~D-g~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~D------g~I~lWDl~t~~~ 470 (1019)
+.+ ..+.+||..+..............-.+.+..+||+.++.++.+ ..+.+||..+.+-
T Consensus 94 g~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W 159 (387)
T d1k3ia3 94 GNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 159 (387)
T ss_dssp SSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred cCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence 655 6899999854432211111111223355777899988888753 3589999887753
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.85 E-value=0.61 Score=49.76 Aligned_cols=178 Identities=12% Similarity=0.106 Sum_probs=99.0
Q ss_pred CCCEEEEEE-cCCeEEEEECCCCceEEEEe--cCCceEEEEEecCCCeeee--------ccCCCce------------ee
Q psy307 447 TGTNFISAG-YDRYLKLWDTESGECISRFT--SRKVAYCVKFHPDEDKQHL--------DIPVDMK------------YI 503 (1019)
Q Consensus 447 dg~~l~S~s-~Dg~I~lWDl~t~~~i~~~~--~~~~v~~v~~~p~~~~~~~--------~~~~~~~------------~i 503 (1019)
||++++... .+..|-+-|+++.++...+. ....+..+...+++....+ ..+.+.. ..
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ 177 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 177 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence 788866555 67899999999999866443 4456666665544332222 0000000 00
Q ss_pred eC----------CCCCcccEEEEcCCCCEEEEEecCC---------------eEEEEEccCc---------ccccceeEE
Q psy307 504 AD----------PTMHSMPAVTSSPNNKWLACQSMDN---------------KILIFSALNR---------FKLNRKKTF 549 (1019)
Q Consensus 504 ~~----------~~~~~i~~v~~spdg~~Lasgs~Dg---------------~I~iwd~~~~---------~~~~~~~~l 549 (1019)
.+ .-......+.++++|+++++.+.+. .+.+++.... ..++....+
T Consensus 178 ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VV 257 (459)
T d1fwxa2 178 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV 257 (459)
T ss_dssp EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred EecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceee
Confidence 01 1122355788999999999887431 2344443110 000111111
Q ss_pred eccc-----------cccceEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCc------------eeeeeeccCCCEEEEEE
Q psy307 550 EGHM-----------VAGYACSLDFSPDMSYLISG-DADGKCYIWDWKTTK------------LFKKWKAHDGVCISTLW 605 (1019)
Q Consensus 550 ~gh~-----------~~~~V~~v~fspdg~~Lasg-s~DG~I~IWDl~t~~------------~l~~l~~h~~~V~sl~~ 605 (1019)
.+.. .......+.++|||+|++++ ..+.++.|+|++.-. .....+ ..-.....+|
T Consensus 258 D~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-lglgPLht~f 336 (459)
T d1fwxa2 258 DGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAF 336 (459)
T ss_dssp ECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-CCSCEEEEEE
T ss_pred cccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc-cCcCcccccc
Confidence 1110 00123467899999997655 468899999996421 111111 1223466778
Q ss_pred cCCCCcEEEEEeCCCcEEEEe
Q psy307 606 HPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 606 sp~~~~~l~s~s~Dg~I~iww 626 (1019)
...| ....|.--|..|..|-
T Consensus 337 d~~g-~aytslfids~v~kw~ 356 (459)
T d1fwxa2 337 DGRG-NAYTSLFLDSQVVKWN 356 (459)
T ss_dssp CTTS-EEEEEETTTTEEEEEE
T ss_pred CCCc-eEEEEeeccceEEEEe
Confidence 8876 5666667899998873
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.70 E-value=0.86 Score=48.57 Aligned_cols=180 Identities=9% Similarity=0.070 Sum_probs=110.5
Q ss_pred cEEE-EEeCCCcEEEEEccCCCeEEEEEc-cccccEeEEEEec--CCCEEEEEEcC------------------CeEEEE
Q psy307 406 HLLL-SCSMDCRVKLWEVYKEHRCVRTYY-GHRQAVRDICFNN--TGTNFISAGYD------------------RYLKLW 463 (1019)
Q Consensus 406 ~~L~-sgs~Dg~I~IWDl~~~~~~~~~l~-~H~~~V~sl~fsp--dg~~l~S~s~D------------------g~I~lW 463 (1019)
++|+ .-..++.|.+-|+ ...++.+... .....+..+...+ +-.+++.++.+ +.+.++
T Consensus 100 rylFVNDkan~RVAvIdl-~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~I 178 (459)
T d1fwxa2 100 RFLFMNDKANTRVARVRC-DVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV 178 (459)
T ss_dssp EEEEEEETTTTEEEEEET-TTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEE
T ss_pred eEEEEEcCCCceEEEEEC-cceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEE
Confidence 4444 4457889999999 4444544332 2344556666654 44466666653 346789
Q ss_pred ECCCCceEEEEecCCceEEEEEecCCCeeeeccC---------------------------------------CCceeee
Q psy307 464 DTESGECISRFTSRKVAYCVKFHPDEDKQHLDIP---------------------------------------VDMKYIA 504 (1019)
Q Consensus 464 Dl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~---------------------------------------~~~~~i~ 504 (1019)
|..+.+....+.....+..+.++|++...++... .....+.
T Consensus 179 D~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD 258 (459)
T d1fwxa2 179 DADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVD 258 (459)
T ss_dssp ETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEE
T ss_pred ecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeec
Confidence 9999999888887777778888998876655100 0000000
Q ss_pred ------------CCCCCcccEEEEcCCCCEEEEEe-cCCeEEEEEccCcccc-----cceeEEecc-ccccceEEEEEcC
Q psy307 505 ------------DPTMHSMPAVTSSPNNKWLACQS-MDNKILIFSALNRFKL-----NRKKTFEGH-MVAGYACSLDFSP 565 (1019)
Q Consensus 505 ------------~~~~~~i~~v~~spdg~~Lasgs-~Dg~I~iwd~~~~~~~-----~~~~~l~gh-~~~~~V~~v~fsp 565 (1019)
.+...+...+.++|||+++++++ .+.++.|+|++.-... .......+. ..+-.....+|+.
T Consensus 259 ~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~ 338 (459)
T d1fwxa2 259 GRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDG 338 (459)
T ss_dssp CSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECT
T ss_pred ccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCC
Confidence 11122345789999999987765 6789999998632111 011111111 1122345678998
Q ss_pred CCCEEEEEeCCCeEEEEeCCC
Q psy307 566 DMSYLISGDADGKCYIWDWKT 586 (1019)
Q Consensus 566 dg~~Lasgs~DG~I~IWDl~t 586 (1019)
+|.-..|---|..|.-|++..
T Consensus 339 ~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 339 RGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp TSEEEEEETTTTEEEEEEHHH
T ss_pred CceEEEEeeccceEEEEecch
Confidence 886666666899999999853
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=95.23 E-value=1 Score=47.21 Aligned_cols=122 Identities=7% Similarity=-0.003 Sum_probs=63.9
Q ss_pred CCCCeEEEEEcCCCCcEEEEeeCC-CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe
Q psy307 334 HTKGISAIRWFPKSAHLLLSCSMD-CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS 412 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs~D-g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs 412 (1019)
|..-..+.++.++ +.+++.|+.+ ..+.+||..+..-....-......-...+..+|| ++++.|+
T Consensus 74 ~~~~~~~~~~~~~-g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG--------------~v~v~GG 138 (387)
T d1k3ia3 74 HDMFCPGISMDGN-GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG--------------RVFTIGG 138 (387)
T ss_dssp CCCSSCEEEECTT-SCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS--------------CEEEECC
T ss_pred cccceeEEEEecC-CcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCC--------------ceeeecc
Confidence 3333445677785 7888888655 6899999854322110000111112344555565 5666665
Q ss_pred CC------CcEEEEEccCCCeEEEE-E-------ccccc-----cEeEEEEecCCCEEEEEEcCCeEEEEECCCCce
Q psy307 413 MD------CRVKLWEVYKEHRCVRT-Y-------YGHRQ-----AVRDICFNNTGTNFISAGYDRYLKLWDTESGEC 470 (1019)
Q Consensus 413 ~D------g~I~IWDl~~~~~~~~~-l-------~~H~~-----~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~ 470 (1019)
.+ ..+.+||+......... . ..+.. .-..+...++|+.++.++.++.+.++|..+...
T Consensus 139 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~ 215 (387)
T d1k3ia3 139 SWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV 215 (387)
T ss_dssp CCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred ccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence 43 46889998543321110 0 00000 011123345677777777777777777776654
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.06 E-value=0.53 Score=49.38 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=36.3
Q ss_pred cceEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeeeee--ccCCCEEEEEEcCCCCcEE
Q psy307 556 GYACSLDFSPDMSYLISG-DADGKCYIWDWKTTKLFKKWK--AHDGVCISTLWHPHEPSKV 613 (1019)
Q Consensus 556 ~~V~~v~fspdg~~Lasg-s~DG~I~IWDl~t~~~l~~l~--~h~~~V~sl~~sp~~~~~l 613 (1019)
...+.|+++||+++|+.+ +..++|++|++.....+.... .-.+.+-.+.+.+.++.+.
T Consensus 206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lw 266 (340)
T d1v04a_ 206 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLW 266 (340)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEE
T ss_pred CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEE
Confidence 457899999999877655 456789999987544332221 1234456677765443333
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.87 E-value=0.7 Score=48.38 Aligned_cols=61 Identities=11% Similarity=0.247 Sum_probs=37.2
Q ss_pred cccEEEEcCCCCEEEEE-ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcC-CCCEEEEE
Q psy307 510 SMPAVTSSPNNKWLACQ-SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP-DMSYLISG 573 (1019)
Q Consensus 510 ~i~~v~~spdg~~Lasg-s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp-dg~~Lasg 573 (1019)
..+.++++|++++|+++ +..++|++|++............. ..+.+-.+.+.+ +|.+.+.+
T Consensus 207 ~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~---l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 207 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEEEE
T ss_pred ccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec---CCCCCCccEEecCCCEEEEEE
Confidence 34578889998776554 567899999987543332222222 224466788876 45544443
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.91 E-value=3 Score=46.56 Aligned_cols=53 Identities=13% Similarity=-0.027 Sum_probs=36.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCC-EEEEEEcCCCCcEEEEEeC
Q psy307 566 DMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGV-CISTLWHPHEPSKVVTAGW 618 (1019)
Q Consensus 566 dg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~-V~sl~~sp~~~~~l~s~s~ 618 (1019)
.|.+|++|+.||.++-+|.++|+.+-+++...+. -.-+.+..+|.++|+....
T Consensus 474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~g 527 (571)
T d2ad6a1 474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYG 527 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEEec
Confidence 4567888999999999999999999887643221 1124455577667655443
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.47 E-value=5.9 Score=42.14 Aligned_cols=107 Identities=6% Similarity=0.042 Sum_probs=58.1
Q ss_pred cCCCCeEEEEEcCCCCcEEEEeeCC----CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEE
Q psy307 333 GHTKGISAIRWFPKSAHLLLSCSMD----CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLaSgs~D----g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L 408 (1019)
++.-.+..++++|++..++++-+.+ ..|++.|+.++...-..+.. .....++|++|+. .++
T Consensus 122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~-------------~~~ 186 (430)
T d1qfma1 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGK-------------GMF 186 (430)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSS-------------EEE
T ss_pred cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCC-------------EEE
Confidence 3443455678899755555554444 46999999554432223321 1124567777774 233
Q ss_pred EEEe---------------CCCcEEEEEccCCCe-EEEEEccc--cccEeEEEEecCCCEEEEE
Q psy307 409 LSCS---------------MDCRVKLWEVYKEHR-CVRTYYGH--RQAVRDICFNNTGTNFISA 454 (1019)
Q Consensus 409 ~sgs---------------~Dg~I~IWDl~~~~~-~~~~l~~H--~~~V~sl~fspdg~~l~S~ 454 (1019)
++.- ....|..|.+.+... ....+... ...+..+..+.++++++..
T Consensus 187 Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~ 250 (430)
T d1qfma1 187 YNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS 250 (430)
T ss_dssp EEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred EEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence 3321 123577777744322 23333333 3456677788899886543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.77 E-value=5.2 Score=39.57 Aligned_cols=181 Identities=8% Similarity=-0.043 Sum_probs=99.4
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEE-cCCeEEEEECCCCceEEEEecCCceEEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG-YDRYLKLWDTESGECISRFTSRKVAYCVK 484 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s-~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~ 484 (1019)
.+..+-..++.|+..++.. ......+......+.++++..-+..|..+. ..+.|.+.++....+...+...
T Consensus 49 ~iywsd~~~~~I~~~~l~g-~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~------- 120 (263)
T d1npea_ 49 VVYWTDISEPSIGRASLHG-GEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG------- 120 (263)
T ss_dssp EEEEEETTTTEEEEEESSS-CCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-------
T ss_pred EEEEEECCCCeEEEEEccc-CCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEeccc-------
Confidence 4555555667788888743 333333433345688889987666665444 4568888887655432222211
Q ss_pred EecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC-C--eEEEEEccCcccccceeEEeccccccceEEE
Q psy307 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD-N--KILIFSALNRFKLNRKKTFEGHMVAGYACSL 561 (1019)
Q Consensus 485 ~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D-g--~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v 561 (1019)
......++++|...++...... + .|..-++..... ..+... .-.....+
T Consensus 121 -----------------------l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~----~~i~~~-~~~~P~gl 172 (263)
T d1npea_ 121 -----------------------LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR----RILAQD-NLGLPNGL 172 (263)
T ss_dssp -----------------------CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC----EEEECT-TCSCEEEE
T ss_pred -----------------------ccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc----eeeeee-cccccceE
Confidence 1233455666655555433222 2 344444443311 122111 12456789
Q ss_pred EEcCCCCEEEEE-eCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 562 DFSPDMSYLISG-DADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 562 ~fspdg~~Lasg-s~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
++++.++.|.-+ ...+.|...|+........+.+-. ...++++. ++.+.+|-...++|...
T Consensus 173 aiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I~~~ 234 (263)
T d1npea_ 173 TFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSVIAM 234 (263)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred EEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE--CCEEEEEECCCCEEEEE
Confidence 999888777555 456789999987655444444333 24577765 33455555555666554
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.37 E-value=6.3 Score=39.60 Aligned_cols=236 Identities=9% Similarity=0.079 Sum_probs=139.0
Q ss_pred EcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEc
Q psy307 343 WFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422 (1019)
Q Consensus 343 fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl 422 (1019)
.+|. ...||.-+ ..++.|+|++. ...+..+.- ...|..-.|-.+. .|+-. .+..|+-|++
T Consensus 70 MhP~-~~IiALra-g~~LQiFnlet-K~klks~~~-~e~VvfWkWis~~---------------~L~lV-T~taVYHW~~ 129 (327)
T d1utca2 70 MNPA-SKVIALKA-GKTLQIFNIEM-KSKMKAHTM-TDDVTFWKWISLN---------------TVALV-TDNAVYHWSM 129 (327)
T ss_dssp ECSS-SSEEEEEE-TTEEEEEETTT-TEEEEEEEC-SSCCCEEEESSSS---------------EEEEE-CSSEEEEEES
T ss_pred cCCC-CcEEEEec-CCeEEEEehhH-hhhhceEEc-CCCcEEEEecCCC---------------EEEEE-cCCceEEEcc
Confidence 3663 55666554 56899999954 444544433 2456666665544 23322 3457999999
Q ss_pred cCCCeEEEEEcccc----ccEeEEEEecCCCEEEEEE---c----CCeEEEEECCCCceEEEEecCCceEEEEEecCCCe
Q psy307 423 YKEHRCVRTYYGHR----QAVRDICFNNTGTNFISAG---Y----DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDK 491 (1019)
Q Consensus 423 ~~~~~~~~~l~~H~----~~V~sl~fspdg~~l~S~s---~----Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~ 491 (1019)
.....+...+..|. ..|..-..+++.++++..| . .|.+.+|..+.+.. +.++++.. +|..
T Consensus 130 ~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s-Q~ieGhaa----~F~~---- 200 (327)
T d1utca2 130 EGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAA----SFAQ---- 200 (327)
T ss_dssp SSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEECCSEE----EEEE----
T ss_pred cCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC-ccccceee----eeEE----
Confidence 66667777777765 3466667788888866443 1 36788888775532 33333321 1110
Q ss_pred eeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcc---cccceeEE----eccccccceEEEEEc
Q psy307 492 QHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRF---KLNRKKTF----EGHMVAGYACSLDFS 564 (1019)
Q Consensus 492 ~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~---~~~~~~~l----~gh~~~~~V~~v~fs 564 (1019)
...+....+..-++|... +...++++|.++.... ..-..+.. ..........++..|
T Consensus 201 ----------~~~~g~~~~~~lf~fa~r------~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs 264 (327)
T d1utca2 201 ----------FKMEGNAEESTLFCFAVR------GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS 264 (327)
T ss_dssp ----------ECCTTCSSCEEEEEEEEE------ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEE
T ss_pred ----------EEcCCCCCCceEEEEEEC------CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEee
Confidence 000111111122222211 2233688888886521 11111111 111123556788999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEE
Q psy307 565 PDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAK 624 (1019)
Q Consensus 565 pdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~i 624 (1019)
+.-..+..-+.-|.|++||+.|+.++..-+-....|-..+-+... .-+++...+|.|..
T Consensus 265 ~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~-~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 265 EKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEAT-AGIIGVNRKGQVLS 323 (327)
T ss_dssp TTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTT-TEEEEEETTSEEEE
T ss_pred ccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCC-ceEEEECCCCeEEE
Confidence 988899999999999999999999988777666777655544443 24667778887754
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.16 E-value=3.4 Score=41.67 Aligned_cols=149 Identities=12% Similarity=0.116 Sum_probs=97.7
Q ss_pred CcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeee
Q psy307 415 CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL 494 (1019)
Q Consensus 415 g~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~ 494 (1019)
..|.|-|+.......+.-..-.+ .-.+|..+.|+.-+ ..++.++|+++.+.+..+.....+.--.|-.
T Consensus 45 ~~VvIidl~n~~~~~Rrpi~Ads----AIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis------- 112 (327)
T d1utca2 45 AQVVIIDMNDPSNPIRRPISADS----AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS------- 112 (327)
T ss_dssp EEEEEEETTSTTSCEEEECCCSE----EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESS-------
T ss_pred ceEEEEECCCCCcceecccchhh----hhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecC-------
Confidence 46778888665554443332222 35678877766555 6789999999999999998877665555532
Q ss_pred ccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccc--cccceEEEEEcCCCCEEEE
Q psy307 495 DIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHM--VAGYACSLDFSPDMSYLIS 572 (1019)
Q Consensus 495 ~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~--~~~~V~~v~fspdg~~Las 572 (1019)
.+.|+.-+ +..|+-|++.+.. .+.+.+..|. ....|..-..+++++|++.
T Consensus 113 -------------------------~~~L~lVT-~taVYHW~~~g~s--~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l 164 (327)
T d1utca2 113 -------------------------LNTVALVT-DNAVYHWSMEGES--QPVKMFDRHSSLAGCQIINYRTDAKQKWLLL 164 (327)
T ss_dssp -------------------------SSEEEEEC-SSEEEEEESSSSC--CCEEEEECCGGGTTCEEEEEEECTTSCEEEE
T ss_pred -------------------------CCEEEEEc-CCceEEEcccCCC--CchhhhhhcccccCceEEEEEECCCCCEEEE
Confidence 23444443 6789999986543 3455665553 2355777888999998775
Q ss_pred Ee-------CCCeEEEEeCCCCceeeeeeccCCCEEEEE
Q psy307 573 GD-------ADGKCYIWDWKTTKLFKKWKAHDGVCISTL 604 (1019)
Q Consensus 573 gs-------~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~ 604 (1019)
.+ -.|.+.+|.... +.-+.+.||.+.-..+.
T Consensus 165 ~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~~~ 202 (327)
T d1utca2 165 TGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFK 202 (327)
T ss_dssp EEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEEC
T ss_pred EeEecCCCceeEEEEEEEecc-CcCccccceeeeeEEEE
Confidence 43 236789998754 45567788865444443
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=91.94 E-value=1.4 Score=49.50 Aligned_cols=52 Identities=17% Similarity=0.152 Sum_probs=35.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCE-EEEEEcCCCCcEEEEEe
Q psy307 566 DMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVC-ISTLWHPHEPSKVVTAG 617 (1019)
Q Consensus 566 dg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V-~sl~~sp~~~~~l~s~s 617 (1019)
.|.+|++|+.||.++.+|.++|+.+-++....+.. .-+.|..+|.++|+..+
T Consensus 487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~ 539 (573)
T d1kb0a2 487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAV 539 (573)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence 67788899999999999999999998876432211 01334446655554444
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=91.69 E-value=2.1 Score=47.83 Aligned_cols=166 Identities=12% Similarity=0.164 Sum_probs=86.2
Q ss_pred EEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeee--ccC--CCceeeeCCC--CCcccEEEEcCCCCEE
Q psy307 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL--DIP--VDMKYIADPT--MHSMPAVTSSPNNKWL 523 (1019)
Q Consensus 450 ~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~--~~~--~~~~~i~~~~--~~~i~~v~~spdg~~L 523 (1019)
.++.++.+|.+.++|..+|+.+...........-...+....... ... .....+.... ...-...+++|+...+
T Consensus 316 ~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~ 395 (560)
T d1kv9a2 316 VLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLV 395 (560)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEE
T ss_pred eeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCee
Confidence 466788899999999999998876654322111111111100000 000 0000010100 1112245556665555
Q ss_pred EEEecC------------------------------------CeEEEEEccCcccccceeEEeccccccceEEEEEcCCC
Q psy307 524 ACQSMD------------------------------------NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM 567 (1019)
Q Consensus 524 asgs~D------------------------------------g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg 567 (1019)
.+...+ |.|.-||+.++...... .+..+..++ .++-.|
T Consensus 396 yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~-~~~~~~~gg-----~l~Tag 469 (560)
T d1kv9a2 396 YIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKV-PYPTHWNGG-----TLSTAG 469 (560)
T ss_dssp EEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEE-EESSSCCCC-----EEEETT
T ss_pred ecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeec-cCCCCCCCc-----eeEECC
Confidence 544322 45667777776433221 122222111 122256
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeeeeeccCCCE-EEEEEcCCCCcEEEEEeCCCc
Q psy307 568 SYLISGDADGKCYIWDWKTTKLFKKWKAHDGVC-ISTLWHPHEPSKVVTAGWDAA 621 (1019)
Q Consensus 568 ~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V-~sl~~sp~~~~~l~s~s~Dg~ 621 (1019)
.+|+.|+.||.++-+|..+|+.+-+++...+.. .-+.+..+|.++|+..+..|.
T Consensus 470 glVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~aG~g~ 524 (560)
T d1kv9a2 470 NLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAGWGG 524 (560)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCS
T ss_pred CEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCCCc
Confidence 688889999999999999999998876432210 113344567666665554443
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=91.29 E-value=13 Score=41.15 Aligned_cols=69 Identities=7% Similarity=0.002 Sum_probs=40.9
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEcc---cc-ccEeEEEEecCCCEEEEEE------cCCeEEEEECCCCceEEEEe
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYG---HR-QAVRDICFNNTGTNFISAG------YDRYLKLWDTESGECISRFT 475 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~---H~-~~V~sl~fspdg~~l~S~s------~Dg~I~lWDl~t~~~i~~~~ 475 (1019)
..|+.++.||.+.-.|..++. ......- +. ..+++--.-.++ .++.++ .+|.|+-+|+++|+.+.++.
T Consensus 116 ~~i~~~~~~g~l~alda~tG~-~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 193 (571)
T d2ad6a1 116 GQIVKKQANGHLLALDAKTGK-INWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCC-EEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CeEEEEeCCCcEEeeehhhhh-hhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence 467888899998888985444 3333221 11 111111111133 344444 36889999999999998765
Q ss_pred c
Q psy307 476 S 476 (1019)
Q Consensus 476 ~ 476 (1019)
.
T Consensus 194 t 194 (571)
T d2ad6a1 194 A 194 (571)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.63 E-value=2.8 Score=47.03 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=37.5
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCC-EEEEEEcCCCCcEEEEEe
Q psy307 565 PDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGV-CISTLWHPHEPSKVVTAG 617 (1019)
Q Consensus 565 pdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~-V~sl~~sp~~~~~l~s~s 617 (1019)
..|.+|++|+.||.++-+|..||+.+-+++...+. -.-+.+..+|.++|+...
T Consensus 495 tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~a 548 (582)
T d1flga_ 495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence 36778888999999999999999999888643221 011455667766665443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.54 E-value=8.8 Score=37.77 Aligned_cols=214 Identities=9% Similarity=-0.068 Sum_probs=110.1
Q ss_pred eEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC---eEEEEEccc
Q psy307 359 RVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH---RCVRTYYGH 435 (1019)
Q Consensus 359 ~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~---~~~~~l~~H 435 (1019)
.|+..++.... ...+......+..+.|.+... .+..+-...+.|.--++.... .........
T Consensus 11 ~I~~~~l~~~~--~~~~~~~~~~~~~id~d~~~~-------------~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~ 75 (266)
T d1ijqa1 11 EVRKMTLDRSE--YTSLIPNLRNVVALDTEVASN-------------RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD 75 (266)
T ss_dssp SEEEEETTSCC--CEEEECSCSSEEEEEEETTTT-------------EEEEEETTTTEEEEEEC--------CEEEECSS
T ss_pred eEEEEECCCCc--ceeeeCCCCceEEEEEEeCCC-------------EEEEEECCCCEEEEEEecCCCCCcceEEEEeCC
Confidence 47777774322 122222334455666665542 333443445556555552211 112223333
Q ss_pred cccEeEEEEecCCCEEEEE-EcCCeEEEEECCCCceEEEEecC-CceEEEEEecCCCeeeeccCCCceeeeCCCCCcccE
Q psy307 436 RQAVRDICFNNTGTNFISA-GYDRYLKLWDTESGECISRFTSR-KVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPA 513 (1019)
Q Consensus 436 ~~~V~sl~fspdg~~l~S~-s~Dg~I~lWDl~t~~~i~~~~~~-~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~ 513 (1019)
...+.+|++.+.+..|..+ ...+.|.+.++............ ..+. .
T Consensus 76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~-------------------------------~ 124 (266)
T d1ijqa1 76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR-------------------------------A 124 (266)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEE-------------------------------E
T ss_pred CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcc-------------------------------e
Confidence 4556778888766665554 45578888888765543333221 2233 4
Q ss_pred EEEcCCCCEEEEEe--cCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCcee
Q psy307 514 VTSSPNNKWLACQS--MDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISG-DADGKCYIWDWKTTKLF 590 (1019)
Q Consensus 514 v~~spdg~~Lasgs--~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasg-s~DG~I~IWDl~t~~~l 590 (1019)
++++|...+|.... ..+.|...++.... ...+.... -.....+++++.++.|.-+ ...+.|...++......
T Consensus 125 l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~----~~~l~~~~-~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~ 199 (266)
T d1ijqa1 125 IVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----IYSLVTEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK 199 (266)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCC----EEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred EEEEcccCeEEEeccCCCcceeEeccCCCc----eecccccc-cceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE
Confidence 55555433333322 23456656655431 12222211 1457889999887766655 45678998898665433
Q ss_pred eeeecc--CCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 591 KKWKAH--DGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 591 ~~l~~h--~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
...... -....++++. ++.++++-..++.|..+
T Consensus 200 ~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~ 234 (266)
T d1ijqa1 200 TILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSA 234 (266)
T ss_dssp EEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred EEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEE
Confidence 333222 2345677766 33456665566666554
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=90.03 E-value=17 Score=40.27 Aligned_cols=52 Identities=19% Similarity=0.137 Sum_probs=36.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCC-EEEEEEcCCCCcEEEEEe
Q psy307 566 DMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGV-CISTLWHPHEPSKVVTAG 617 (1019)
Q Consensus 566 dg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~-V~sl~~sp~~~~~l~s~s 617 (1019)
.|.+|+.|+.||.++-+|.+||+.+-++....+. -.=+.+..+|.++|+...
T Consensus 483 agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav~~ 535 (596)
T d1w6sa_ 483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY 535 (596)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEEEEe
Confidence 5678888999999999999999999888643221 011334456766666543
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.08 E-value=17 Score=37.73 Aligned_cols=94 Identities=4% Similarity=-0.089 Sum_probs=49.7
Q ss_pred CEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEE-eCCCCceeeeeeccCCC
Q psy307 521 KWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIW-DWKTTKLFKKWKAHDGV 599 (1019)
Q Consensus 521 ~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IW-Dl~t~~~l~~l~~h~~~ 599 (1019)
..++....+|.+.++++.+...........+-.-.+.+.+++|++.|..+++++.++ ..+- ++.....+.........
T Consensus 136 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~ 214 (381)
T d1xipa_ 136 NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYS 214 (381)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSE
T ss_pred ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcc
Confidence 356666778899999887763221111111111124577888888888888875443 2211 22211111111123456
Q ss_pred EEEEEEcCCCCcEEEEE
Q psy307 600 CISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 600 V~sl~~sp~~~~~l~s~ 616 (1019)
|.++.|..+. .++++-
T Consensus 215 v~sI~WL~~~-~F~vvy 230 (381)
T d1xipa_ 215 PLSVTILSPQ-DFLAVF 230 (381)
T ss_dssp EEEEEESSSS-EEEEEE
T ss_pred eeEEEEecCc-eEEEEE
Confidence 8899999765 344443
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=87.88 E-value=23 Score=39.07 Aligned_cols=68 Identities=18% Similarity=0.190 Sum_probs=42.4
Q ss_pred CcEEEEEeCCCcEEEEEccCCCeEEEEEc-c--cc-ccEeEE-EEecCCCEEEEEEc------CCeEEEEECCCCceEEE
Q psy307 405 AHLLLSCSMDCRVKLWEVYKEHRCVRTYY-G--HR-QAVRDI-CFNNTGTNFISAGY------DRYLKLWDTESGECISR 473 (1019)
Q Consensus 405 ~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~-~--H~-~~V~sl-~fspdg~~l~S~s~------Dg~I~lWDl~t~~~i~~ 473 (1019)
+.+++.++.|+.|.-.|..+ ++.+..+. + +. ..+++- .+ .+..++.++. .|.|+-+|+++|+.+.+
T Consensus 121 ~~~v~~~t~dg~l~Alda~t-G~~~w~~~~~d~~~~~~~t~~P~v--~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~ 197 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAET-GETVWKVENSDIKVGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWR 197 (596)
T ss_dssp CCEEEEECTTSEEEEEETTT-CCEEEEEECCCGGGTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred ceEEEEEeCCCCeEeecccc-CceeccccccccccccccccCCcE--ECCeEEEeeccccccccCceEEEECCCCcEEEE
Confidence 35788999999999999854 44444432 1 11 111110 11 1334555543 48899999999999988
Q ss_pred Ee
Q psy307 474 FT 475 (1019)
Q Consensus 474 ~~ 475 (1019)
+.
T Consensus 198 ~~ 199 (596)
T d1w6sa_ 198 AY 199 (596)
T ss_dssp EE
T ss_pred ee
Confidence 75
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=86.42 E-value=7.3 Score=43.09 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=33.9
Q ss_pred CCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCC-EEEEEeC
Q psy307 519 NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMS-YLISGDA 575 (1019)
Q Consensus 519 dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~-~Lasgs~ 575 (1019)
.+.++++|+.||.++-||..++..+.....-.+.. +.+ +.|..||+ ||+..+.
T Consensus 468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~-~~P---~ty~~dGkqyv~v~aG 521 (560)
T d1kv9a2 468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIV-AAP---MTFELAGRQYVAIMAG 521 (560)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC-SCC---EEEEETTEEEEEEEEC
T ss_pred CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCcc-ccC---EEEEECCEEEEEEEeC
Confidence 46688889999999999999996654433322221 222 45556785 6655443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=84.56 E-value=23 Score=37.51 Aligned_cols=36 Identities=8% Similarity=0.119 Sum_probs=28.2
Q ss_pred ccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEE
Q psy307 437 QAVRDICFNNTGTNFISAGYDRYLKLWDTESGECIS 472 (1019)
Q Consensus 437 ~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~ 472 (1019)
...++|+|.|+|+.|++--..|.|++++..++....
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~ 62 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT 62 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEee
Confidence 456788999999887766457999999988876543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=83.67 E-value=7.2 Score=43.29 Aligned_cols=54 Identities=19% Similarity=0.168 Sum_probs=34.4
Q ss_pred cCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCC-EEEEEe
Q psy307 517 SPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMS-YLISGD 574 (1019)
Q Consensus 517 spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~-~Lasgs 574 (1019)
+-.|.++++|+.||.++.||..++..+.....-.+ ..+.+ +.|..||+ ||+..+
T Consensus 485 stagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~-~~~~P---~ty~~~GkQYv~v~~ 539 (573)
T d1kb0a2 485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG-VVAAP---STYMVDGRQYVSVAV 539 (573)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC-CCSCC---EEEEETTEEEEEEEE
T ss_pred EEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCC-ccccC---EEEEECCEEEEEEEe
Confidence 34677888999999999999999966543332222 12233 45556776 554443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=83.05 E-value=32 Score=36.34 Aligned_cols=54 Identities=11% Similarity=0.139 Sum_probs=34.4
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-EEEEEec------ccCccEeEEEEcCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-RCVRTYY------GHRQAVRDICFNNT 390 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~~~~~~~------gh~~~V~~i~fspd 390 (1019)
..-++|+|.|+ +++|++--..|.|++++..... ..+..+. .-......|+|+|+
T Consensus 27 ~~P~~la~~pd-g~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGPD-NQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEeCC-CeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 46779999996 7777766567999999864332 2222221 11245667777775
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=81.22 E-value=32 Score=35.09 Aligned_cols=204 Identities=10% Similarity=0.151 Sum_probs=108.9
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe-CC---CcEEEEEcc
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS-MD---CRVKLWEVY 423 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs-~D---g~I~IWDl~ 423 (1019)
..+++.....+-|.+||+ . ++.+..+. .+.++.|..-.. ..... ...-++.++ .+ .+|.+|.+.
T Consensus 40 ~SlI~gTdK~~Gl~vYdL-~-G~~l~~~~--~Gr~NNVDvr~~-------~~l~~-~~~di~vasnR~~~~~~l~~~~id 107 (353)
T d1h6la_ 40 NSKLITTNKKSGLAVYSL-E-GKMLHSYH--TGKLNNVDIRYD-------FPLNG-KKVDIAAASNRSEGKNTIEIYAID 107 (353)
T ss_dssp GCEEEEEETTSCCEEEET-T-CCEEEECC--SSCEEEEEEEEE-------EEETT-EEEEEEEEEECCTTTCEEEEEEEE
T ss_pred ccEEEEEcCcCCEEEEcC-C-CcEEEecc--cCCcCccccccc-------cccCC-cceEEEEEeCCcCcceeEEEEEec
Confidence 457777777777999998 3 44455443 245555543310 00000 001233333 32 368888886
Q ss_pred CCCeEEEEEccc-------cccEeEEEE--ecC-CC-EEEEEEcCCeEEEEECC---CCce----EEEEecCCceEEEEE
Q psy307 424 KEHRCVRTYYGH-------RQAVRDICF--NNT-GT-NFISAGYDRYLKLWDTE---SGEC----ISRFTSRKVAYCVKF 485 (1019)
Q Consensus 424 ~~~~~~~~l~~H-------~~~V~sl~f--spd-g~-~l~S~s~Dg~I~lWDl~---t~~~----i~~~~~~~~v~~v~~ 485 (1019)
.....+..+... ...+..+|+ ++. |. +++....+|.+..|.+. .+.. ++.+...
T Consensus 108 ~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~-------- 179 (353)
T d1h6la_ 108 GKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN-------- 179 (353)
T ss_dssp TTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS--------
T ss_pred CcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC--------
Confidence 444444444322 124667777 554 44 35566678888888652 2221 2222221
Q ss_pred ecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcc--cccceeEEeccccccceEEEEE
Q psy307 486 HPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRF--KLNRKKTFEGHMVAGYACSLDF 563 (1019)
Q Consensus 486 ~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~--~~~~~~~l~gh~~~~~V~~v~f 563 (1019)
..+..|.+......|..+-.+..|..+++.... ....+....+....+-+-.++.
T Consensus 180 -----------------------~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlai 236 (353)
T d1h6la_ 180 -----------------------SQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTI 236 (353)
T ss_dssp -----------------------SCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEE
T ss_pred -----------------------CccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEE
Confidence 235567777777888888888777666654221 1111111122112244555654
Q ss_pred c--CC--CCEEEEEeCCCeEEEEeCCCC-ceeeeee
Q psy307 564 S--PD--MSYLISGDADGKCYIWDWKTT-KLFKKWK 594 (1019)
Q Consensus 564 s--pd--g~~Lasgs~DG~I~IWDl~t~-~~l~~l~ 594 (1019)
- ++ |-+|+|.-.+++..|||..+. +.+..|.
T Consensus 237 y~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~ 272 (353)
T d1h6la_ 237 YYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ 272 (353)
T ss_dssp EECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence 3 33 334555556789999998774 5665654
|