Psyllid ID: psy3109

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------
Protein Sequence
MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANSVLYLLGLMSH
Secondary Structure (PSIPRED)
cEEHHHHHHHHHHHHHHcccccccEEEEEEEccccccccHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEHHHHHHHHHHHHHHccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MKCVGIQYLETIRRYIAEGKKFKRTihvsfvpgpvtqnetcglAAANSVLYLLGLMSH
Flexible Loop (DISEMBL)
MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANSVLYLLGLMSH
Low Complexity Region (SEG)
MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANSVLYLLGLMSH
Disordered region (IsUnstruct)
**CVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANSVLYLLGL***
Disordered Region (DISOPRED)
*KCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANSVLYLLGLMS*
Disordered Region (DISEMBL)
MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANSVLYLLGLMSH
Disordered Region (DISPRO)
MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANSVLYLLGLMS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANSVLYLLGLMSH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	58	2.2.26 [Sep-21-2011]
Q03154	408	Aminoacylase-1 OS=Homo sa	no	N/A	0.551	0.078	0.656	8e-07
Q5RFB0	408	Aminoacylase-1 OS=Pongo a	yes	N/A	0.551	0.078	0.625	1e-06
P37111	407	Aminoacylase-1 OS=Sus scr	yes	N/A	0.551	0.078	0.656	2e-06
Q6PTT0	408	Aminoacylase-1B OS=Rattus	yes	N/A	0.551	0.078	0.625	2e-06
Q99JW2	408	Aminoacylase-1 OS=Mus mus	yes	N/A	0.551	0.078	0.625	8e-06
Q6AYS7	408	Aminoacylase-1A OS=Rattus	yes	N/A	0.551	0.078	0.625	8e-06
Q55DP8	408	Aminoacylase-1 OS=Dictyos	yes	N/A	0.551	0.078	0.593	1e-05

>sp|Q03154|ACY1_HUMAN Aminoacylase-1 OS=Homo sapiens GN=ACY1 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/32 (65%), Positives = 25/32 (78%)

Query: 1   MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
           MKCV IQYLE +RR   EG +F RTIH++FVP
Sbjct: 114 MKCVSIQYLEAVRRLKVEGHRFPRTIHMTFVP 145

Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate).
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 4

>sp|Q5RFB0|ACY1_PONAB Aminoacylase-1 OS=Pongo abelii GN=ACY1 PE=2 SV=2

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 25/32 (78%)

Query: 1   MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
           MKC+ IQYLE +RR   EG +F RTIH++FVP
Sbjct: 114 MKCISIQYLEAVRRLKVEGHRFPRTIHMTFVP 145

Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate).

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|P37111|ACY1_PIG Aminoacylase-1 OS=Sus scrofa GN=ACY1 PE=1 SV=2

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/32 (65%), Positives = 24/32 (75%)

Query: 1   MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
           MKCV IQYLE +RR   EG  F RTIH++FVP
Sbjct: 114 MKCVSIQYLEAVRRLKVEGHHFPRTIHMTFVP 145

Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate).

Sus scrofa (taxid: 9823)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q6PTT0|ACY1B_RAT Aminoacylase-1B OS=Rattus norvegicus GN=Acy1b PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 25/32 (78%)

Query: 1   MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
           MKCV IQYLE ++R   EG +F RTIH++FVP
Sbjct: 114 MKCVSIQYLEAVKRLKVEGHRFPRTIHMTFVP 145

Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate).

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q99JW2|ACY1_MOUSE Aminoacylase-1 OS=Mus musculus GN=Acy1 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 25/32 (78%)

Query: 1   MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
           MK V IQYLE +RR  +EG +F RTIH++FVP
Sbjct: 114 MKSVSIQYLEAVRRLKSEGHRFPRTIHMTFVP 145

Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate).

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q6AYS7|ACY1A_RAT Aminoacylase-1A OS=Rattus norvegicus GN=Acy1a PE=1 SV=1

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 25/32 (78%)

Query: 1   MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
           MK V IQYLE +RR  +EG +F RTIH++FVP
Sbjct: 114 MKSVSIQYLEAVRRLKSEGHRFPRTIHMTFVP 145

Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate).

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q55DP8|ACY1_DICDI Aminoacylase-1 OS=Dictyostelium discoideum GN=acy1 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 25/32 (78%)

Query: 1   MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
           MKCV +Q+LE  RR +  G+K KRT+H+SFVP
Sbjct: 110 MKCVCMQFLEVARRIVQSGQKLKRTLHLSFVP 141

Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate).

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	58
196006435	396	hypothetical protein TRIADDRAFT_50344 [T	0.551	0.080	0.781	2e-07
193650225	400	PREDICTED: aminoacylase-1A-like [Acyrtho	0.551	0.08	0.75	9e-07
48096676	401	PREDICTED: aminoacylase-1-like [Apis mel	0.551	0.079	0.75	9e-07
383851451	508	PREDICTED: aminoacylase-1-like [Megachil	0.551	0.062	0.75	9e-07
395516946	412	PREDICTED: aminoacylase-1A-like [Sarcoph	0.551	0.077	0.75	1e-06
363738590	348	PREDICTED: aminoacylase-1-like isoform 2	0.551	0.091	0.781	1e-06
363738588	413	PREDICTED: aminoacylase-1-like isoform 1	0.551	0.077	0.781	1e-06
326927775	392	PREDICTED: aminoacylase-1-like, partial	0.551	0.081	0.781	1e-06
260798889	411	hypothetical protein BRAFLDRAFT_262219 [	0.551	0.077	0.75	3e-06
380020424	401	PREDICTED: LOW QUALITY PROTEIN: aminoacy	0.551	0.079	0.75	3e-06

>gi|196006435|ref|XP_002113084.1| hypothetical protein TRIADDRAFT_50344 [Trichoplax adhaerens] gi|190585125|gb|EDV25194.1| hypothetical protein TRIADDRAFT_50344 [Trichoplax adhaerens]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/32 (78%), Positives = 28/32 (87%)

Query: 1   MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
           MKCVGIQY+E IRR   EGK+FKRTIH+SFVP
Sbjct: 109 MKCVGIQYIEAIRRLKKEGKRFKRTIHMSFVP 140

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

>gi|193650225|ref|XP_001951399.1| PREDICTED: aminoacylase-1A-like [Acyrthosiphon pisum]

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/32 (75%), Positives = 26/32 (81%)

Query: 1   MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
           MKCVGIQYLETIR+YI E  K KRTIH+ F P
Sbjct: 114 MKCVGIQYLETIRKYITEKLKLKRTIHICFTP 145

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48096676|ref|XP_392498.1| PREDICTED: aminoacylase-1-like [Apis mellifera]

 Score = 57.4 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/32 (75%), Positives = 27/32 (84%)

Query: 1   MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
           MKCVGIQYLE IRR    G++FKRTIH+SFVP
Sbjct: 115 MKCVGIQYLEAIRRMKLTGQRFKRTIHISFVP 146

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851451|ref|XP_003701246.1| PREDICTED: aminoacylase-1-like [Megachile rotundata]

 Score = 57.4 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/32 (75%), Positives = 27/32 (84%)

Query: 1   MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
           MKCVGIQYLE IRR    G++FKRTIH+SFVP
Sbjct: 115 MKCVGIQYLEAIRRMKLAGQRFKRTIHISFVP 146

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|395516946|ref|XP_003762644.1| PREDICTED: aminoacylase-1A-like [Sarcophilus harrisii]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/32 (75%), Positives = 27/32 (84%)

Query: 1   MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
           MKCVGIQY+E IRR  AEGK F RTIH++FVP
Sbjct: 118 MKCVGIQYVEAIRRLKAEGKSFPRTIHLTFVP 149

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|363738590|ref|XP_003642034.1| PREDICTED: aminoacylase-1-like isoform 2 [Gallus gallus]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/32 (78%), Positives = 26/32 (81%)

Query: 1   MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
           MKCV IQYLE IRR  AEGK F RTIH+SFVP
Sbjct: 119 MKCVSIQYLEAIRRLKAEGKSFARTIHLSFVP 150

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|363738588|ref|XP_003642033.1| PREDICTED: aminoacylase-1-like isoform 1 [Gallus gallus]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/32 (78%), Positives = 26/32 (81%)

Query: 1   MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
           MKCV IQYLE IRR  AEGK F RTIH+SFVP
Sbjct: 119 MKCVSIQYLEAIRRLKAEGKSFARTIHLSFVP 150

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326927775|ref|XP_003210064.1| PREDICTED: aminoacylase-1-like, partial [Meleagris gallopavo]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/32 (78%), Positives = 26/32 (81%)

Query: 1   MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
           MKCV IQYLE IRR  AEGK F RTIH+SFVP
Sbjct: 98  MKCVSIQYLEAIRRLKAEGKSFARTIHLSFVP 129

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260798889|ref|XP_002594432.1| hypothetical protein BRAFLDRAFT_262219 [Branchiostoma floridae] gi|229279666|gb|EEN50443.1| hypothetical protein BRAFLDRAFT_262219 [Branchiostoma floridae]

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/32 (75%), Positives = 26/32 (81%)

Query: 1   MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
           MKC GI YLE IRR  AEGK+FKRT H+SFVP
Sbjct: 120 MKCCGIWYLEAIRRLKAEGKRFKRTFHLSFVP 151

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|380020424|ref|XP_003694085.1| PREDICTED: LOW QUALITY PROTEIN: aminoacylase-1-like [Apis florea]

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/32 (75%), Positives = 26/32 (81%)

Query: 1   MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
           MKCVGIQYLE IRR    G++FKRTIH SFVP
Sbjct: 115 MKCVGIQYLEAIRRMKLTGQRFKRTIHXSFVP 146

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	58
UNIPROTKB|F8WC59	201	ACY1 "Aminoacylase-1" [Homo sa	0.551	0.159	0.656	6.5e-07
UNIPROTKB|C9JYZ0	228	ACY1 "Aminoacylase-1" [Homo sa	0.551	0.140	0.656	1e-06
UNIPROTKB|F1PHI4	408	ACY1 "Uncharacterized protein"	0.551	0.078	0.687	1.3e-06
UNIPROTKB|Q3T0V2	373	ACY1 "Aminoacylase 1" [Bos tau	0.551	0.085	0.687	2.4e-06
UNIPROTKB|C9JWD4	343	ACY1 "Aminoacylase-1" [Homo sa	0.551	0.093	0.656	2.7e-06
UNIPROTKB|C9J6I6	373	ACY1 "Aminoacylase-1" [Homo sa	0.551	0.085	0.656	3.1e-06
UNIPROTKB|Q03154	408	ACY1 "Aminoacylase-1" [Homo sa	0.551	0.078	0.656	3.6e-06
UNIPROTKB|F1MR63	501	ACY1 "Uncharacterized protein"	0.551	0.063	0.687	3.9e-06
UNIPROTKB|B4DNW0	498	ACY1 "cDNA FLJ60317, highly si	0.551	0.064	0.656	4.9e-06
UNIPROTKB|C9JMV9	509	ABHD14A-ACY1 "Protein ABHD14A-	0.551	0.062	0.656	5.1e-06

UNIPROTKB|F8WC59 ACY1 "Aminoacylase-1" [Homo sapiens (taxid:9606)]

 Score = 115 (45.5 bits), Expect = 6.5e-07, P = 6.5e-07
 Identities = 21/32 (65%), Positives = 25/32 (78%)

Query:     1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
             MKCV IQYLE +RR   EG +F RTIH++FVP
Sbjct:   114 MKCVSIQYLEAVRRLKVEGHRFPRTIHMTFVP 145

GO:0004046 "aminoacylase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

UNIPROTKB|C9JYZ0 ACY1 "Aminoacylase-1" [Homo sapiens (taxid:9606)]

 Score = 115 (45.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 21/32 (65%), Positives = 25/32 (78%)

Query:     1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
             MKCV IQYLE +RR   EG +F RTIH++FVP
Sbjct:   123 MKCVSIQYLEAVRRLKVEGHRFPRTIHMTFVP 154

GO:0004046 "aminoacylase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

UNIPROTKB|F1PHI4 ACY1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 119 (46.9 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 22/32 (68%), Positives = 26/32 (81%)

Query:     1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
             MKCV IQYLE +RR  AEG+ F RTIH++FVP
Sbjct:   114 MKCVSIQYLEAVRRLKAEGRHFPRTIHMTFVP 145

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004046 "aminoacylase activity" evidence=IEA

UNIPROTKB|Q3T0V2 ACY1 "Aminoacylase 1" [Bos taurus (taxid:9913)]

 Score = 116 (45.9 bits), Expect = 2.4e-06, P = 2.4e-06
 Identities = 22/32 (68%), Positives = 25/32 (78%)

Query:     1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
             MKCV IQYLE +RR  AEG  F RTIH++FVP
Sbjct:    79 MKCVSIQYLEAVRRLKAEGHHFPRTIHLTFVP 110

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004046 "aminoacylase activity" evidence=IEA

UNIPROTKB|C9JWD4 ACY1 "Aminoacylase-1" [Homo sapiens (taxid:9606)]

 Score = 115 (45.5 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 21/32 (65%), Positives = 25/32 (78%)

Query:     1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
             MKCV IQYLE +RR   EG +F RTIH++FVP
Sbjct:   114 MKCVSIQYLEAVRRLKVEGHRFPRTIHMTFVP 145

GO:0004046 "aminoacylase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

UNIPROTKB|C9J6I6 ACY1 "Aminoacylase-1" [Homo sapiens (taxid:9606)]

 Score = 115 (45.5 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 21/32 (65%), Positives = 25/32 (78%)

Query:     1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
             MKCV IQYLE +RR   EG +F RTIH++FVP
Sbjct:    79 MKCVSIQYLEAVRRLKVEGHRFPRTIHMTFVP 110

GO:0004046 "aminoacylase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

UNIPROTKB|Q03154 ACY1 "Aminoacylase-1" [Homo sapiens (taxid:9606)]

 Score = 115 (45.5 bits), Expect = 3.6e-06, P = 3.6e-06
 Identities = 21/32 (65%), Positives = 25/32 (78%)

Query:     1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
             MKCV IQYLE +RR   EG +F RTIH++FVP
Sbjct:   114 MKCVSIQYLEAVRRLKVEGHRFPRTIHMTFVP 145

GO:0006508 "proteolysis" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004046 "aminoacylase activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|F1MR63 ACY1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 116 (45.9 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 22/32 (68%), Positives = 25/32 (78%)

Query:     1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
             MKCV IQYLE +RR  AEG  F RTIH++FVP
Sbjct:   207 MKCVSIQYLEAVRRLKAEGHHFPRTIHLTFVP 238

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004046 "aminoacylase activity" evidence=IEA

UNIPROTKB|B4DNW0 ACY1 "cDNA FLJ60317, highly similar to Aminoacylase-1 (EC 3.5.1.14)" [Homo sapiens (taxid:9606)]

 Score = 115 (45.5 bits), Expect = 4.9e-06, P = 4.9e-06
 Identities = 21/32 (65%), Positives = 25/32 (78%)

Query:     1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
             MKCV IQYLE +RR   EG +F RTIH++FVP
Sbjct:   204 MKCVSIQYLEAVRRLKVEGHRFPRTIHMTFVP 235

GO:0004046 "aminoacylase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

UNIPROTKB|C9JMV9 ABHD14A-ACY1 "Protein ABHD14A-ACY1" [Homo sapiens (taxid:9606)]

 Score = 115 (45.5 bits), Expect = 5.1e-06, P = 5.1e-06
 Identities = 21/32 (65%), Positives = 25/32 (78%)

Query:     1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
             MKCV IQYLE +RR   EG +F RTIH++FVP
Sbjct:   215 MKCVSIQYLEAVRRLKVEGHRFPRTIHMTFVP 246

GO:0004046 "aminoacylase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RFB0	ACY1_PONAB	3, ., 5, ., 1, ., 1, 4	0.625	0.5517	0.0784	yes	N/A
P37111	ACY1_PIG	3, ., 5, ., 1, ., 1, 4	0.6562	0.5517	0.0786	yes	N/A
Q6AYS7	ACY1A_RAT	3, ., 5, ., 1, ., 1, 4	0.625	0.5517	0.0784	yes	N/A
Q55DP8	ACY1_DICDI	3, ., 5, ., 1, ., 1, 4	0.5937	0.5517	0.0784	yes	N/A
Q6PTT0	ACY1B_RAT	3, ., 5, ., 1, ., 1, 4	0.625	0.5517	0.0784	yes	N/A
Q99JW2	ACY1_MOUSE	3, ., 5, ., 1, ., 1, 4	0.625	0.5517	0.0784	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	58
cd05646	391	cd05646, M20_AcylaseI_like, M20 Aminoacylase-I lik	8e-17
TIGR01880	400	TIGR01880, Ac-peptdase-euk, N-acyl-L-amino-acid am	9e-14

>gnl|CDD|193524 cd05646, M20_AcylaseI_like, M20 Aminoacylase-I like subfamily

 Score = 71.2 bits (175), Expect = 8e-17
 Identities = 25/32 (78%), Positives = 26/32 (81%)

Query: 1   MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
           MKCVGIQYLE IRR  A G K KRTIH+SFVP
Sbjct: 106 MKCVGIQYLEAIRRLKASGFKPKRTIHLSFVP 137

Peptidase M20 family, Aminoacylase-I like (AcyI-like; Acylase I; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14) subfamily. Acylase I is involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate) and is considered as a potential target of antimicrobial agents. Porcine AcyI is also shown to deacetylate certain quorum-sensing N-acylhomoserine lactones, while the rat enzyme has been implicated in degradation of chemotactic peptides of commensal bacteria. Prokaryotic arginine synthesis usually involves the transfer of an acetyl group to glutamate by ornithine acetyltransferase in order to form ornithine. However, Escherichia coli acetylornithine deacetylase (acetylornithinase, ArgE) (EC 3.5.1.16) catalyzes the deacylation of N2-acetyl-L-ornithine to yield ornithine and acetate. Phylogenetic evidence suggests that the clustering of the arg genes in one continuous sequence pattern arose in an ancestor common to Enterobacteriaceae and Vibrionaceae, where ornithine acetyltransferase was lost and replaced by a deacylase. Length = 391

>gnl|CDD|233615 TIGR01880, Ac-peptdase-euk, N-acyl-L-amino-acid amidohydrolase

 Score = 62.9 bits (153), Expect = 9e-14
 Identities = 23/32 (71%), Positives = 26/32 (81%)

Query: 1   MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
           MKCVG+QYLE +R   A G KFKRTIH+SFVP
Sbjct: 113 MKCVGVQYLEAVRNLKASGFKFKRTIHISFVP 144

This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids. Length = 400

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	58
KOG2275|consensus	420		99.31
PRK12891	414	allantoate amidohydrolase; Reviewed	98.86
PF01546	189	Peptidase_M20: Peptidase family M20/M25/M40 This f	98.85
TIGR03176	406	AllC allantoate amidohydrolase. This enzyme cataly	98.84
PRK07205	444	hypothetical protein; Provisional	98.83
PRK07338	402	hypothetical protein; Provisional	98.79
PRK07906	426	hypothetical protein; Provisional	98.78
PRK13983	400	diaminopimelate aminotransferase; Provisional	98.77
PRK13013	427	succinyl-diaminopimelate desuccinylase; Reviewed	98.77
PRK07318	466	dipeptidase PepV; Reviewed	98.74
PRK08588	377	succinyl-diaminopimelate desuccinylase; Reviewed	98.71
PRK08262	486	hypothetical protein; Provisional	98.7
TIGR01880	400	Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase	98.7
PRK12890	414	allantoate amidohydrolase; Reviewed	98.67
PRK13009	375	succinyl-diaminopimelate desuccinylase; Reviewed	98.66
PRK09104	464	hypothetical protein; Validated	98.65
TIGR01246	370	dapE_proteo succinyl-diaminopimelate desuccinylase	98.65
TIGR01887	447	dipeptidaselike dipeptidase, putative. This model	98.64
PRK07473	376	carboxypeptidase; Provisional	98.63
PRK13590	591	putative bifunctional OHCU decarboxylase/allantoat	98.62
PRK09133	472	hypothetical protein; Provisional	98.62
PRK08596	421	acetylornithine deacetylase; Validated	98.6
PRK06156	520	hypothetical protein; Provisional	98.59
COG0624	409	ArgE Acetylornithine deacetylase/Succinyl-diaminop	98.59
PRK08201	456	hypothetical protein; Provisional	98.59
TIGR01910	375	DapE-ArgE acetylornithine deacetylase or succinyl-	98.58
PRK09290	413	allantoate amidohydrolase; Reviewed	98.57
PRK12893	412	allantoate amidohydrolase; Reviewed	98.56
TIGR01886	466	dipeptidase dipeptidase PepV. This model represent	98.52
PRK06915	422	acetylornithine deacetylase; Validated	98.52
PRK06446	436	hypothetical protein; Provisional	98.52
PRK06133	410	glutamate carboxypeptidase; Reviewed	98.51
PRK07079	469	hypothetical protein; Provisional	98.51
PRK04443	348	acetyl-lysine deacetylase; Provisional	98.51
TIGR01883	361	PepT-like peptidase T-like protein. This model rep	98.51
PRK13799	591	unknown domain/N-carbamoyl-L-amino acid hydrolase	98.5
PRK06837	427	acetylornithine deacetylase; Provisional	98.48
TIGR01879	401	hydantase amidase, hydantoinase/carbamoylase famil	98.44
PRK05469	408	peptidase T; Provisional	98.42
TIGR01882	410	peptidase-T peptidase T. This model represents a t	98.41
PRK08554	438	peptidase; Reviewed	98.41
PRK13004	399	peptidase; Reviewed	98.39
PRK12892	412	allantoate amidohydrolase; Reviewed	98.39
PRK08652	347	acetylornithine deacetylase; Provisional	98.38
TIGR01900	373	dapE-gram_pos succinyl-diaminopimelate desuccinyla	98.37
PRK08651	394	succinyl-diaminopimelate desuccinylase; Reviewed	98.33
PRK13381	404	peptidase T; Provisional	98.32
PRK07522	385	acetylornithine deacetylase; Provisional	98.31
TIGR01892	364	AcOrn-deacetyl acetylornithine deacetylase (ArgE).	98.3
TIGR03106	343	trio_M42_hydro hydrolase, peptidase M42 family. Th	98.3
PRK07907	449	hypothetical protein; Provisional	98.24
PRK05111	383	acetylornithine deacetylase; Provisional	98.24
PRK13007	352	succinyl-diaminopimelate desuccinylase; Reviewed	98.21
PRK00466	346	acetyl-lysine deacetylase; Validated	98.2
TIGR03320	395	ygeY M20/DapE family protein YgeY. Members of this	98.18
PRK10199	346	alkaline phosphatase isozyme conversion aminopepti	98.16
TIGR01902	336	dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine d	98.13
TIGR03526	395	selenium_YgeY putative selenium metabolism hydrola	97.99
PF04389	179	Peptidase_M28: Peptidase family M28; InterPro: IPR	97.98
PLN02693	437	IAA-amino acid hydrolase	97.87
PRK08737	364	acetylornithine deacetylase; Provisional	97.86
TIGR01891	363	amidohydrolases amidohydrolase. This model represe	97.74
TIGR01893	477	aa-his-dipept aminoacyl-histidine dipeptidase.	97.7
PRK15026	485	aminoacyl-histidine dipeptidase; Provisional	97.59
PLN02280	478	IAA-amino acid hydrolase	97.48
PRK09961	344	exoaminopeptidase; Provisional	96.93
KOG2195|consensus	702		96.58
TIGR03107	350	glu_aminopep glutamyl aminopeptidase. This model r	96.56
PF05343	292	Peptidase_M42: M42 glutamyl aminopeptidase; InterP	96.42
COG1363	355	FrvX Cellulase M and related proteins [Carbohydrat	96.2
COG2234	435	Iap Predicted aminopeptidases [General function pr	96.12
PRK09864	356	putative peptidase; Provisional	96.1
COG2195	414	PepD Di- and tripeptidases [Amino acid transport a	95.74
COG4187	553	RocB Arginine degradation protein (predicted deacy	95.7
KOG2276|consensus	473		93.67
PRK02256	462	putative aminopeptidase 1; Provisional	93.64
COG1473	392	AbgB Metal-dependent amidase/aminoacylase/carboxyp	90.27
PF05450	234	Nicastrin: Nicastrin; InterPro: IPR008710 Nicastri	89.69
PF02127	432	Peptidase_M18: Aminopeptidase I zinc metalloprotea	88.96
PRK02813	428	putative aminopeptidase 2; Provisional	88.77
KOG2194|consensus	834		85.47
PTZ00371	465	aspartyl aminopeptidase; Provisional	85.08

>KOG2275|consensus

Probab=99.31  E-value=3.7e-12  Score=91.06  Aligned_cols=49  Identities=47%  Similarity=0.694  Sum_probs=44.9

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANSVL   50 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s~~   50 (58)
                      |||.++|+++|+|.|+..|++|+|||.++|++|||+||. .|+.-+++.+
T Consensus       130 ~K~~~va~leAir~L~~~g~kp~Rti~lsfvpDEEi~G~-~Gm~~fa~~~  178 (420)
T KOG2275|consen  130 MKCVGVAYLEAIRNLKASGFKPKRTIHLSFVPDEEIGGH-IGMKEFAKTE  178 (420)
T ss_pred             hHhHHHHHHHHHHHHHhcCCCcCceEEEEecCchhccCc-chHHHHhhhh
Confidence            899999999999999999999999999999999999997 5777777644

>PRK12891 allantoate amidohydrolase; Reviewed

Probab=98.86  E-value=3.6e-09  Score=73.51  Aligned_cols=49  Identities=14%  Similarity=0.085  Sum_probs=43.2

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANSVLY   51 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s~~~   51 (58)
                      ||+++++.++|+++|++.|.+|+++|.+++++|||.|+  +|..+.||+.+
T Consensus        96 ~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~~~--f~~~~~Gs~~~  144 (414)
T PRK12891         96 GIYGVLGGLEVVRALNDAGIETERPVDVVIWTNEEGSR--FAPSMVGSGVF  144 (414)
T ss_pred             chhhHHHHHHHHHHHHHcCCCCCCCeEEEEecccccCc--CCcccccHHHH
Confidence            89999999999999999999999999999999999653  57777777654

>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.85  E-value=1.6e-08  Score=62.08  Aligned_cols=44  Identities=18%  Similarity=0.180  Sum_probs=39.6

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAA   45 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~   45 (58)
                      ||+++++.+.|++.|++.+..++++|.++|++|||+|+. .|...
T Consensus        37 ~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~-~g~~~   80 (189)
T PF01546_consen   37 MKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSI-GGAKH   80 (189)
T ss_dssp             THHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTST-THHHH
T ss_pred             CcccHHHHHHHHHHHHhccccccccccccccccccCCCc-chhhh
Confidence            799999999999999999999999999999999999986 35443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....

>TIGR03176 AllC allantoate amidohydrolase

Probab=98.84  E-value=4e-09  Score=73.65  Aligned_cols=49  Identities=8%  Similarity=-0.110  Sum_probs=45.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHHHHHH
Q psy3109           2 KCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANSVLYL   52 (58)
Q Consensus         2 K~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s~~~~   52 (58)
                      +.++++.++|++.|+++|.+|+++|.++++.+||  |.+||.++++|+.+.
T Consensus        90 ~~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EE--g~rf~~~~~Gs~~~~  138 (406)
T TIGR03176        90 QFGALAAWLAVDYLKEKYGAPLRTVEVLSMAEEE--GSRFPYVFWGSKNIF  138 (406)
T ss_pred             hhhHHHHHHHHHHHHHcCCCCCCCeEEEEecccc--CccCCcccccHHHHh
Confidence            5789999999999999999999999999999999  556999999999986

This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.

>PRK07205 hypothetical protein; Provisional

Probab=98.83  E-value=8e-09  Score=72.20  Aligned_cols=45  Identities=18%  Similarity=0.203  Sum_probs=40.1

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAA   46 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~   46 (58)
                      ||+++++.+.|++.|++.|..|+++|.++|++|||+|+. +...+.
T Consensus       117 mKgglaa~l~Al~~l~~~~~~~~~~i~l~~~~dEE~g~~-g~~~~~  161 (444)
T PRK07205        117 DKGPSMAALYAVKALLDAGVQFNKRIRFIFGTDEETLWR-CMNRYN  161 (444)
T ss_pred             CcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCcc-cHHHHH
Confidence            899999999999999999998999999999999999885 444443

>PRK07338 hypothetical protein; Provisional

Probab=98.79  E-value=1.7e-08  Score=69.29  Aligned_cols=46  Identities=13%  Similarity=-0.010  Sum_probs=40.0

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAAN   47 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~   47 (58)
                      ||+++++.++|++.|++.+..++++|.++|++|||+|+. ++..++.
T Consensus       130 mKgg~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~-g~~~~~~  175 (402)
T PRK07338        130 MKGGIVVMLAALLAFERSPLADKLGYDVLINPDEEIGSP-ASAPLLA  175 (402)
T ss_pred             hhHHHHHHHHHHHHHHhcCCCCCCCEEEEEECCcccCCh-hhHHHHH
Confidence            899999999999999998888889999999999999885 4544443

>PRK07906 hypothetical protein; Provisional

Probab=98.78  E-value=1.7e-08  Score=69.91  Aligned_cols=46  Identities=20%  Similarity=0.252  Sum_probs=41.1

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAAN   47 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~   47 (58)
                      ||+++++.++|++.|++.+..|+++|.++|++|||+||. .|..++.
T Consensus       106 ~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~-~g~~~l~  151 (426)
T PRK07906        106 MKDMDAMMLAVVRHLARTGRRPPRDLVFAFVADEEAGGT-YGAHWLV  151 (426)
T ss_pred             cchHHHHHHHHHHHHHHcCCCCCccEEEEEecCcccchh-hhHHHHH
Confidence            899999999999999999999999999999999999886 4655553

>PRK13983 diaminopimelate aminotransferase; Provisional

Probab=98.77  E-value=1.4e-08  Score=68.92  Aligned_cols=47  Identities=15%  Similarity=0.130  Sum_probs=41.6

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANS   48 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s   48 (58)
                      ||+++++.++|++.|++.+..|+++|.++|++|||+|+. +|..++..
T Consensus       118 ~K~g~~a~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~-~g~~~~~~  164 (400)
T PRK13983        118 NGQGIVSSLLALKALMDLGIRPKYNLGLAFVSDEETGSK-YGIQYLLK  164 (400)
T ss_pred             ccchHHHHHHHHHHHHHhCCCCCCcEEEEEEeccccCCc-ccHHHHHh
Confidence            799999999999999999988999999999999999886 56665554

>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed

Probab=98.77  E-value=1.5e-08  Score=69.78  Aligned_cols=46  Identities=17%  Similarity=0.079  Sum_probs=40.7

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAAN   47 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~   47 (58)
                      ||+++++.+.|++.|++.+..++++|.++|++|||+||. +|..++.
T Consensus       124 ~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~-~g~~~l~  169 (427)
T PRK13013        124 MKGGLAASIIAAEAFLAVYPDFAGSIEISGTADEESGGF-GGVAYLA  169 (427)
T ss_pred             cchHHHHHHHHHHHHHHhCCCCCccEEEEEEeccccCCh-hHHHHHH
Confidence            899999999999999999888889999999999999886 5655544

>PRK07318 dipeptidase PepV; Reviewed

Probab=98.74  E-value=2.5e-08  Score=70.30  Aligned_cols=43  Identities=5%  Similarity=-0.055  Sum_probs=38.9

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAA   45 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~   45 (58)
                      ||+++++.+.|++.|++.|+.|+++|.++|++|||+|+.  |..+
T Consensus       119 mKgg~aa~l~Al~~l~~~g~~~~~~i~l~~~~DEE~g~~--G~~~  161 (466)
T PRK07318        119 DKGPTMAAYYALKIIKELGLPLSKKVRFIVGTDEESGWK--CMDY  161 (466)
T ss_pred             CcHHHHHHHHHHHHHHHcCCCCCccEEEEEEcccccCch--hHHH
Confidence            899999999999999999988889999999999999874  5444

>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed

Probab=98.71  E-value=3.2e-08  Score=67.28  Aligned_cols=39  Identities=15%  Similarity=0.110  Sum_probs=36.7

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++.+.|++.|.+.+..|+++|.++|++|||+|+.
T Consensus       101 ~Kgg~aa~l~a~~~l~~~~~~~~~~i~l~~~~dEE~g~~  139 (377)
T PRK08588        101 MKSGLAALVIAMIELKEQGQLLNGTIRLLATAGEEVGEL  139 (377)
T ss_pred             ccchHHHHHHHHHHHHHcCCCCCCcEEEEEEcccccCch
Confidence            899999999999999999988999999999999998864

>PRK08262 hypothetical protein; Provisional

Probab=98.70  E-value=5e-08  Score=68.89  Aligned_cols=39  Identities=23%  Similarity=0.186  Sum_probs=37.1

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++.+.|++.|++.+..|+++|.++|.+|||+||.
T Consensus       155 ~Kg~~aa~L~A~~~l~~~~~~l~~~I~llf~~dEE~g~~  193 (486)
T PRK08262        155 DKGSLVAILEAAEALLAQGFQPRRTIYLAFGHDEEVGGL  193 (486)
T ss_pred             cchhHHHHHHHHHHHHHcCCCCCCeEEEEEecccccCCc
Confidence            899999999999999999988889999999999999885

>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase

Probab=98.70  E-value=4.9e-08  Score=67.05  Aligned_cols=45  Identities=51%  Similarity=0.759  Sum_probs=39.2

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAA   45 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~   45 (58)
                      ||+++++.+.|++.|++.+..|+++|.++|++|||+||..+...+
T Consensus       113 ~K~~~aa~l~a~~~l~~~~~~~~~~v~l~~~~dEE~g~~~G~~~~  157 (400)
T TIGR01880       113 MKCVGVQYLEAVRNLKASGFKFKRTIHISFVPDEEIGGHDGMEKF  157 (400)
T ss_pred             ccHHHHHHHHHHHHHHHcCCCCCceEEEEEeCCcccCcHhHHHHH
Confidence            899999999999999999988899999999999999875333333

This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.

>PRK12890 allantoate amidohydrolase; Reviewed

Probab=98.67  E-value=3.5e-08  Score=68.27  Aligned_cols=48  Identities=13%  Similarity=-0.022  Sum_probs=40.2

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANSVL   50 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s~~   50 (58)
                      ||+++++.++|+++|++.+..|+++|.+++++|||.|+  +|..+.+++.
T Consensus        94 ~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~--~~~~~~G~~~  141 (414)
T PRK12890         94 GILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVR--FGPSMIGSRA  141 (414)
T ss_pred             CHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEecccccc--cCCccccHHH
Confidence            79999999999999999998899999999999999755  3444455543

>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed

Probab=98.66  E-value=7.9e-08  Score=65.07  Aligned_cols=45  Identities=16%  Similarity=0.158  Sum_probs=38.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAA   46 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~   46 (58)
                      ||+++++.+.|+++|++.+..++++|+++|++|||.|+. .|...+
T Consensus       100 ~Kgg~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~~-~G~~~~  144 (375)
T PRK13009        100 MKGSLAAFVVAAERFVAAHPDHKGSIAFLITSDEEGPAI-NGTVKV  144 (375)
T ss_pred             ChHHHHHHHHHHHHHHHhcCCCCceEEEEEEeecccccc-cCHHHH
Confidence            899999999999999999888889999999999998764 344433

>PRK09104 hypothetical protein; Validated

Probab=98.65  E-value=6.6e-08  Score=67.93  Aligned_cols=47  Identities=11%  Similarity=0.072  Sum_probs=41.1

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANS   48 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s   48 (58)
                      ||+++++.++|+++|++.+..++.+|.++|++|||+||. ++..++.+
T Consensus       129 ~Kg~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~-g~~~~l~~  175 (464)
T PRK09104        129 DKGQLMTFVEACRAWKAVTGSLPVRVTILFEGEEESGSP-SLVPFLEA  175 (464)
T ss_pred             CcHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccCCc-cHHHHHHh
Confidence            899999999999999998766777899999999999986 66666654

>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade

Probab=98.65  E-value=8.3e-08  Score=65.11  Aligned_cols=47  Identities=13%  Similarity=0.150  Sum_probs=39.6

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANS   48 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s   48 (58)
                      ||+++++++.|++.|++.+..++.+|.++|++|||+|+. .|...+..
T Consensus        97 ~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~~-~G~~~~~~  143 (370)
T TIGR01246        97 MKGSLAAFIVAAERFVKKNPDHKGSISLLITSDEEGTAI-DGTKKVVE  143 (370)
T ss_pred             chHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeccccCCC-cCHHHHHH
Confidence            899999999999999999877788999999999998765 35544433

This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.

>TIGR01887 dipeptidaselike dipeptidase, putative

Probab=98.64  E-value=7.7e-08  Score=68.19  Aligned_cols=45  Identities=22%  Similarity=0.084  Sum_probs=39.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAA   46 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~   46 (58)
                      ||+++++.+.|++.|++.+..|+++|.++|+.|||+|+. +...++
T Consensus       107 ~KG~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~-g~~~~l  151 (447)
T TIGR01887       107 DKGPTIAALYAMKILKELGLKLKKKIRFIFGTDEETGWA-CIDYYF  151 (447)
T ss_pred             CcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCcH-hHHHHH
Confidence            899999999999999999998899999999999999875 444444

This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.

>PRK07473 carboxypeptidase; Provisional

Probab=98.63  E-value=1e-07  Score=65.73  Aligned_cols=45  Identities=24%  Similarity=0.191  Sum_probs=38.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAA   46 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~   46 (58)
                      ||+++++.+.|++.|++.+..++.+|.++|++|||+|+. +...++
T Consensus       113 ~Kgglaa~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~~-g~~~~~  157 (376)
T PRK07473        113 MKGGNYLALEAIRQLARAGITTPLPITVLFTPDEEVGTP-STRDLI  157 (376)
T ss_pred             chHHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCcccCCc-cHHHHH
Confidence            899999999999999999877778899999999999885 444443

>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional

Probab=98.62  E-value=5.1e-08  Score=71.31  Aligned_cols=49  Identities=8%  Similarity=-0.020  Sum_probs=44.4

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANSVLY   51 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s~~~   51 (58)
                      +|.++++++++++.|++.|.+|+++|.++++.|||  |.+|+.++.||+.+
T Consensus       271 G~~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~EE--g~rF~~~~~GS~~~  319 (591)
T PRK13590        271 GRLGIFVPMACVRELHRQGRRLPFGLEVVGFAEEE--GQRYKATFLGSGAL  319 (591)
T ss_pred             cHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCc--cccCCccccchHHH
Confidence            47899999999999999999999999999999999  55688889999864

>PRK09133 hypothetical protein; Provisional

Probab=98.62  E-value=8.4e-08  Score=67.53  Aligned_cols=45  Identities=24%  Similarity=0.177  Sum_probs=38.5

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAA   46 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~   46 (58)
                      ||+++++.++|++.|++.+..|+++|.++|++|||+++. .|...+
T Consensus       142 ~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~g~-~G~~~l  186 (472)
T PRK09133        142 DKADAAIWVATLIRLKREGFKPKRDIILALTGDEEGTPM-NGVAWL  186 (472)
T ss_pred             chHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccCcc-chHHHH
Confidence            899999999999999999988999999999999995443 354444

>PRK08596 acetylornithine deacetylase; Validated

Probab=98.60  E-value=9.9e-08  Score=66.36  Aligned_cols=39  Identities=18%  Similarity=0.043  Sum_probs=36.9

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++.+.|+++|++.+..|+++|.++|++|||+|+.
T Consensus       119 ~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~  157 (421)
T PRK08596        119 MKGGLAGALFAIQLLHEAGIELPGDLIFQSVIGEEVGEA  157 (421)
T ss_pred             cchHHHHHHHHHHHHHHcCCCCCCcEEEEEEeccccCCc
Confidence            899999999999999999988889999999999999874

>PRK06156 hypothetical protein; Provisional

Probab=98.59  E-value=1.3e-07  Score=67.88  Aligned_cols=45  Identities=13%  Similarity=-0.003  Sum_probs=39.6

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAA   46 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~   46 (58)
                      ||+++++.++|++.|++.+.+|+++|.++|++|||+|+. +...+.
T Consensus       155 ~Kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~-G~~~~~  199 (520)
T PRK06156        155 DKGAIVTALYAMKAIKDSGLPLARRIELLVYTTEETDGD-PLKYYL  199 (520)
T ss_pred             chHHHHHHHHHHHHHHHcCCCCCceEEEEEecccccCch-hHHHHH
Confidence            899999999999999999998889999999999999885 444333

>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]

Probab=98.59  E-value=1e-07  Score=65.66  Aligned_cols=48  Identities=17%  Similarity=0.103  Sum_probs=42.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANSV   49 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s~   49 (58)
                      ||+++++.+.|++.+.+.|..++++|.++|++|||+||. ++..++...
T Consensus       117 ~KG~~~a~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~~-~~~~~~~~~  164 (409)
T COG0624         117 MKGGLAAALYALSALKAAGGELPGDVRLLFTADEESGGA-GGKAYLEEG  164 (409)
T ss_pred             cchHHHHHHHHHHHHHHhCCCCCeEEEEEEEeccccCCc-chHHHHHhc
Confidence            899999999999999999888999999999999999996 666665544

>PRK08201 hypothetical protein; Provisional

Probab=98.59  E-value=1.3e-07  Score=66.24  Aligned_cols=46  Identities=4%  Similarity=-0.105  Sum_probs=39.3

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAAN   47 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~   47 (58)
                      ||+++++.++|+++|++.+..++++|.++|++|||+|+. +...++.
T Consensus       121 mKgglaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~-g~~~~l~  166 (456)
T PRK08201        121 DKGQVFMHLKAVEALLKVEGTLPVNVKFCIEGEEEIGSP-NLDSFVE  166 (456)
T ss_pred             CcHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccCCc-cHHHHHH
Confidence            899999999999999887666778999999999999986 5555543

>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase

Probab=98.58  E-value=1.3e-07  Score=64.31  Aligned_cols=45  Identities=18%  Similarity=0.051  Sum_probs=39.1

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAA   46 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~   46 (58)
                      ||++++++++|++.|++.+..++++|.++|++|||+|+. +...++
T Consensus       106 ~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~-G~~~~~  150 (375)
T TIGR01910       106 MKGGLVALLYALKAIREAGIKPNGNIILQSVVDEESGEA-GTLYLL  150 (375)
T ss_pred             cchHHHHHHHHHHHHHHcCCCCCccEEEEEEcCcccCch-hHHHHH
Confidence            799999999999999999888889999999999999875 444443

This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.

>PRK09290 allantoate amidohydrolase; Reviewed

Probab=98.57  E-value=1.2e-07  Score=65.76  Aligned_cols=37  Identities=19%  Similarity=0.115  Sum_probs=35.1

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCC
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQ   37 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~G   37 (58)
                      ||+++++.++|+++|++.+..|+++|.+++++|||+|
T Consensus        93 ~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g  129 (413)
T PRK09290         93 GPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGS  129 (413)
T ss_pred             CHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccc
Confidence            6999999999999999999888999999999999986

>PRK12893 allantoate amidohydrolase; Reviewed

Probab=98.56  E-value=1.1e-07  Score=65.53  Aligned_cols=37  Identities=19%  Similarity=0.103  Sum_probs=34.9

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCC
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQ   37 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~G   37 (58)
                      +|+++++.+.|++.|++.+..++++|.++|++|||+|
T Consensus        96 gk~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g  132 (412)
T PRK12893         96 GALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGA  132 (412)
T ss_pred             chhhHHHHHHHHHHHHHcCCCCCCCeEEEEEcccccc
Confidence            5899999999999999999888999999999999975

>TIGR01886 dipeptidase dipeptidase PepV

Probab=98.52  E-value=2.2e-07  Score=65.87  Aligned_cols=39  Identities=10%  Similarity=-0.077  Sum_probs=37.2

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++.+.|+++|++.+..|+++|.++|+.|||+|+.
T Consensus       118 ~Kg~~~a~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~  156 (466)
T TIGR01886       118 DKGPSLAAYYAMKILKELGLPPSKKIRFVVGTNEETGWV  156 (466)
T ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCEEEEEECccccCcc
Confidence            899999999999999999998999999999999999875

This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.

>PRK06915 acetylornithine deacetylase; Validated

Probab=98.52  E-value=2.5e-07  Score=63.95  Aligned_cols=39  Identities=18%  Similarity=0.178  Sum_probs=36.4

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++.+.|++.|++.+..++.+|.++|++|||+|+.
T Consensus       135 ~Kgg~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~  173 (422)
T PRK06915        135 MKGGNVALLLAMEALIESGIELKGDVIFQSVIEEESGGA  173 (422)
T ss_pred             chHHHHHHHHHHHHHHHcCCCCCCcEEEEEecccccCCc
Confidence            899999999999999999887888999999999999875

>PRK06446 hypothetical protein; Provisional

Probab=98.52  E-value=2.7e-07  Score=64.54  Aligned_cols=45  Identities=11%  Similarity=-0.009  Sum_probs=38.0

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAAN   47 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~   47 (58)
                      ||+++++.+.|+++|++.+ .|+.+|.++|++|||+|+. +...++.
T Consensus       104 mKgglaa~l~A~~~l~~~~-~~~~~i~~~~~~dEE~g~~-g~~~~l~  148 (436)
T PRK06446        104 NKGTLMARLFAIKHLIDKH-KLNVNVKFLYEGEEEIGSP-NLEDFIE  148 (436)
T ss_pred             CcHHHHHHHHHHHHHHHcC-CCCCCEEEEEEcccccCCH-hHHHHHH
Confidence            8999999999999998776 5778999999999999986 5444443

>PRK06133 glutamate carboxypeptidase; Reviewed

Probab=98.51  E-value=3.2e-07  Score=63.75  Aligned_cols=39  Identities=23%  Similarity=0.079  Sum_probs=36.4

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++.+.|++.|++.+..|+.+|.++|++|||+|+.
T Consensus       137 ~kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~  175 (410)
T PRK06133        137 DKGGVAVILHALKILQQLGFKDYGTLTVLFNPDEETGSP  175 (410)
T ss_pred             chHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCcccCCc
Confidence            899999999999999999888888999999999999874

>PRK07079 hypothetical protein; Provisional

Probab=98.51  E-value=2.8e-07  Score=64.99  Aligned_cols=39  Identities=13%  Similarity=0.131  Sum_probs=35.5

Q ss_pred             ChHHHHHHHHHHHHHHHc-CCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAE-GKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~-g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++.+.|++.|++. +.+++++|.++|++|||+||.
T Consensus       128 mKgg~aa~l~A~~~l~~~~~~~~~~~i~~~~~~dEE~g~~  167 (469)
T PRK07079        128 NKGQHTINLAALEQVLAARGGRLGFNVKLLIEMGEEIGSP  167 (469)
T ss_pred             CcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccCCc
Confidence            899999999999999764 578889999999999999885

>PRK04443 acetyl-lysine deacetylase; Provisional

Probab=98.51  E-value=1.9e-07  Score=63.36  Aligned_cols=44  Identities=7%  Similarity=-0.034  Sum_probs=37.3

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANS   48 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s   48 (58)
                      ||+++++.++|++.|   +..++++|.+++++|||+|+. ++..++.+
T Consensus        92 ~Kg~~aa~l~A~~~l---~~~~~~~i~~~~~~dEE~g~~-~~~~~l~~  135 (348)
T PRK04443         92 AKGPLAAFAAAAARL---EALVRARVSFVGAVEEEAPSS-GGARLVAD  135 (348)
T ss_pred             cccHHHHHHHHHHHh---cccCCCCEEEEEEcccccCCh-hHHHHHHh
Confidence            899999999999998   456888999999999999986 56555543

>TIGR01883 PepT-like peptidase T-like protein

Probab=98.51  E-value=2.4e-07  Score=62.56  Aligned_cols=38  Identities=18%  Similarity=-0.018  Sum_probs=34.6

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++++++++.|++.+ .|+++|.++|++|||.|+.
T Consensus       101 ~k~g~a~~l~~~~~l~~~~-~~~~~v~~~~~~~EE~g~~  138 (361)
T TIGR01883       101 DKAGVAAMLEAMDVLSTEE-TPHGTIEFIFTVKEELGLI  138 (361)
T ss_pred             ccHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccCch
Confidence            8999999999999999876 5778999999999998764

This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.

>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional

Probab=98.50  E-value=1.6e-07  Score=68.74  Aligned_cols=48  Identities=6%  Similarity=-0.015  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHHHHHH
Q psy3109           3 CVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANSVLYL   52 (58)
Q Consensus         3 ~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s~~~~   52 (58)
                      .++++.+++++.|++.|.+|+++|.++.+.|||  |.+|+.++.||+.+.
T Consensus       273 ~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~~EE--g~rF~~~~~GS~~~~  320 (591)
T PRK13799        273 EGIFLAIACVKELHEQGERLPFHFEVIAFAEEE--GQRFKATFLGSGALI  320 (591)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCC--ccCCCccccchHHHh
Confidence            478999999999999999999999999999999  667999999999985

>PRK06837 acetylornithine deacetylase; Provisional

Probab=98.48  E-value=3.5e-07  Score=63.70  Aligned_cols=39  Identities=18%  Similarity=0.069  Sum_probs=36.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++.+.|++.|++.|..|+++|.++|++|||.|+.
T Consensus       139 ~Kgg~~a~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~g~  177 (427)
T PRK06837        139 MKAGLAAMLFALDALRAAGLAPAARVHFQSVIEEESTGN  177 (427)
T ss_pred             chHHHHHHHHHHHHHHHcCCCCCCcEEEEEEeccccCCH
Confidence            899999999999999999988899999999999998875

>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family

Probab=98.44  E-value=3.2e-07  Score=63.45  Aligned_cols=48  Identities=8%  Similarity=-0.153  Sum_probs=38.4

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHHHHH
Q psy3109           2 KCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANSVLY   51 (58)
Q Consensus         2 K~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s~~~   51 (58)
                      |.++++.++|+++|++.|.+|+++|.+++++|||.+  +|+.++.+++.+
T Consensus        88 ~~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~--~f~~~~~Gs~~~  135 (401)
T TIGR01879        88 QLGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGS--RFPYGMWGSRNM  135 (401)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCc--CcccccccHHHH
Confidence            567899999999999999999999999999999942  244444444443

Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.

>PRK05469 peptidase T; Provisional

Probab=98.42  E-value=4.3e-07  Score=62.76  Aligned_cols=37  Identities=19%  Similarity=0.166  Sum_probs=34.4

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCC
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQ   37 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~G   37 (58)
                      ||+++++.+.|++.|++.+..|+.+|.++|++|||+|
T Consensus       141 ~Kgglaa~l~a~~~l~~~~~~~~g~v~~~f~~dEE~g  177 (408)
T PRK05469        141 DKAGIAEIMTALEYLIAHPEIKHGDIRVAFTPDEEIG  177 (408)
T ss_pred             chHHHHHHHHHHHHHHhCCCCCCCCEEEEEecccccC
Confidence            8999999999999999887677789999999999986

>TIGR01882 peptidase-T peptidase T

Probab=98.41  E-value=4.9e-07  Score=62.89  Aligned_cols=37  Identities=19%  Similarity=0.125  Sum_probs=33.0

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCC
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQ   37 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~G   37 (58)
                      ||++++++++|++.|++.+..++.+|.++|++|||+|
T Consensus       143 ~KgglAa~l~A~~~L~e~~~~~~g~I~~~ft~dEE~g  179 (410)
T TIGR01882       143 DKAGIAEIMTAADYLINHPEIKHGTIRVAFTPDEEIG  179 (410)
T ss_pred             CHHHHHHHHHHHHHHHhCCCCCCCCEEEEEECcccCC
Confidence            8999999999999999874446779999999999985

This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.

>PRK08554 peptidase; Reviewed

Probab=98.41  E-value=6.6e-07  Score=63.23  Aligned_cols=41  Identities=7%  Similarity=0.041  Sum_probs=35.2

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLA   44 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~   44 (58)
                      ||+++++.+.|++.|++.+  ++++|.++|++|||+||. ++..
T Consensus       104 mKgg~aa~l~A~~~l~~~~--~~~~i~l~~~~dEE~g~~-~~~~  144 (438)
T PRK08554        104 DKGNVASVMLALKELSKEP--LNGKVIFAFTGDEEIGGA-MAMH  144 (438)
T ss_pred             chHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccCcc-ccHH
Confidence            8999999999999998754  667899999999999885 4543

>PRK13004 peptidase; Reviewed

Probab=98.39  E-value=9.2e-07  Score=60.97  Aligned_cols=38  Identities=11%  Similarity=-0.144  Sum_probs=35.4

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCC
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQN   38 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg   38 (58)
                      ||+++++.+.|++.|++.+..++++|.++|++|||.++
T Consensus       111 ~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~  148 (399)
T PRK13004        111 QKGGMASMVYAAKIIKDLGLDDEYTLYVTGTVQEEDCD  148 (399)
T ss_pred             cchHHHHHHHHHHHHHhcCCCCCCeEEEEEEcccccCc
Confidence            89999999999999999998888999999999999754

>PRK12892 allantoate amidohydrolase; Reviewed

Probab=98.39  E-value=5.9e-07  Score=61.81  Aligned_cols=37  Identities=14%  Similarity=-0.036  Sum_probs=34.5

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCC
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQ   37 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~G   37 (58)
                      +|++++++++|+++|++.|.+|+++|.+++++|||.|
T Consensus        94 g~~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~  130 (412)
T PRK12892         94 GALGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGS  130 (412)
T ss_pred             chHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCcccc
Confidence            4788999999999999999999999999999999975

>PRK08652 acetylornithine deacetylase; Provisional

Probab=98.38  E-value=7.4e-07  Score=59.57  Aligned_cols=37  Identities=14%  Similarity=0.003  Sum_probs=32.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||++++++++|++.|.+..  ++++|.++|++|||+|+.
T Consensus        88 ~Kg~~a~~l~a~~~l~~~~--~~~~v~~~~~~dEE~g~~  124 (347)
T PRK08652         88 AKGGVAAILLALEELGKEF--EDLNVGIAFVSDEEEGGR  124 (347)
T ss_pred             hhHHHHHHHHHHHHHhhcc--cCCCEEEEEecCcccCCh
Confidence            8999999999999998653  456999999999999875

>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase

Probab=98.37  E-value=8.2e-07  Score=61.15  Aligned_cols=45  Identities=16%  Similarity=0.091  Sum_probs=36.0

Q ss_pred             ChHHHHHHHHHHHHHHH--cCCCCCceEEEEeeCCCCCCChhhhHHH
Q psy3109           1 MKCVGIQYLETIRRYIA--EGKKFKRTIHVSFVPGPVTQNETCGLAA   45 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~--~g~~p~r~I~l~f~~DEE~Gg~~~g~~~   45 (58)
                      ||+++++.+.|++.|.+  .+..++.+|.++|++|||+|+...|...
T Consensus       104 mKgg~aa~l~a~~~l~~~~~~~~~~~~i~~~~~~dEE~~~~~~G~~~  150 (373)
T TIGR01900       104 MKAGDAVMLHLAATLDGRAPETELKHDLTLIAYDCEEVAAEKNGLGH  150 (373)
T ss_pred             hhHHHHHHHHHHHHHhhhccccCCCCCEEEEEEecccccCCCCCHHH
Confidence            89999999999999954  4557788999999999999753224433

This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.

>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed

Probab=98.33  E-value=1.1e-06  Score=59.91  Aligned_cols=36  Identities=25%  Similarity=0.273  Sum_probs=33.0

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++.++|++.|++.+   +++|.++|++|||+|+.
T Consensus       115 ~k~~~~~~l~a~~~l~~~~---~~~v~~~~~~~EE~g~~  150 (394)
T PRK08651        115 MKGGIAALLAAFERLDPAG---DGNIELAIVPDEETGGT  150 (394)
T ss_pred             cchHHHHHHHHHHHHHhcC---CCCEEEEEecCccccch
Confidence            7999999999999998876   68999999999999873

>PRK13381 peptidase T; Provisional

Probab=98.32  E-value=1.3e-06  Score=60.27  Aligned_cols=38  Identities=16%  Similarity=0.091  Sum_probs=34.3

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++.+.|++.|.+.+ .++.+|.++|++|||+|+.
T Consensus       139 mKgg~aa~l~a~~~l~~~~-~~~g~i~~~~~~dEE~g~~  176 (404)
T PRK13381        139 NKAAIAVVMTLLENLTENE-VEHGDIVVAFVPDEEIGLR  176 (404)
T ss_pred             cHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccccc
Confidence            8999999999999999885 4677999999999999864

>PRK07522 acetylornithine deacetylase; Provisional

Probab=98.31  E-value=1.3e-06  Score=59.27  Aligned_cols=43  Identities=16%  Similarity=0.105  Sum_probs=35.6

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAA   46 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~   46 (58)
                      ||+++++.+.|++.|++.+  ++++|.++|++|||+|+. +...++
T Consensus       105 ~Kg~~a~~l~a~~~l~~~~--~~~~i~~~~~~dEE~g~~-G~~~l~  147 (385)
T PRK07522        105 MKGFIAAALAAVPELAAAP--LRRPLHLAFSYDEEVGCL-GVPSMI  147 (385)
T ss_pred             cchHHHHHHHHHHHHHhCC--CCCCEEEEEEeccccCCc-cHHHHH
Confidence            7999999999999998874  568999999999999874 433433

>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE)

Probab=98.30  E-value=1.5e-06  Score=58.37  Aligned_cols=37  Identities=19%  Similarity=0.177  Sum_probs=33.1

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++.+.|++.|++.+  .+++|.++|++|||+|+.
T Consensus        99 ~Kg~~a~~l~a~~~l~~~~--~~~~v~~~~~~~EE~g~~  135 (364)
T TIGR01892        99 MKGFLACALAAAPDLAAEQ--LKKPLHLALTADEEVGCT  135 (364)
T ss_pred             cchHHHHHHHHHHHHHhcC--cCCCEEEEEEeccccCCc
Confidence            8999999999999999865  467899999999999874

This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.

>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family

Probab=98.30  E-value=1.5e-06  Score=60.56  Aligned_cols=38  Identities=11%  Similarity=0.067  Sum_probs=35.9

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCC
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQN   38 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg   38 (58)
                      ||++++++++++++|++.+..++++|+++|+.|||+|.
T Consensus       184 ~K~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG~  221 (343)
T TIGR03106       184 DKAGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVGS  221 (343)
T ss_pred             cHHhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccCc
Confidence            89999999999999999888888999999999999983

This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.

>PRK07907 hypothetical protein; Provisional

Probab=98.24  E-value=2.5e-06  Score=59.80  Aligned_cols=42  Identities=12%  Similarity=-0.095  Sum_probs=34.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAA   46 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~   46 (58)
                      ||+++++.+.|+++|   +..++++|.+++++|||+|+. +...++
T Consensus       125 ~Kg~~aa~l~a~~~l---~~~~~~~i~~~~~~dEE~g~~-g~~~~l  166 (449)
T PRK07907        125 DKGGIAMHLAALRAL---GGDLPVGVTVFVEGEEEMGSP-SLERLL  166 (449)
T ss_pred             CcHHHHHHHHHHHHh---ccCCCCcEEEEEEcCcccCCc-cHHHHH
Confidence            899999999999999   445678999999999999985 443433

>PRK05111 acetylornithine deacetylase; Provisional

Probab=98.24  E-value=2.3e-06  Score=58.24  Aligned_cols=37  Identities=19%  Similarity=0.098  Sum_probs=32.7

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++++.|+++|++.+  ++.+|.++|++|||+|+.
T Consensus       112 ~Kg~~a~~l~a~~~l~~~~--~~~~i~~~~~~~EE~g~~  148 (383)
T PRK05111        112 MKGFFAFILEALRDIDLTK--LKKPLYILATADEETSMA  148 (383)
T ss_pred             ccHHHHHHHHHHHHHhhcC--CCCCeEEEEEeccccCcc
Confidence            8999999999999998764  346899999999999874

>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed

Probab=98.21  E-value=2.7e-06  Score=57.20  Aligned_cols=41  Identities=17%  Similarity=0.117  Sum_probs=33.5

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAA   45 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~   45 (58)
                      ||+++++.+.|++.|.    .|+++|.++|++|||+|+...|...
T Consensus        96 ~Kg~~a~~l~a~~~l~----~~~~~i~~~~~~~EE~~~~~~G~~~  136 (352)
T PRK13007         96 MKSGLAVMLHLAATLA----EPAHDLTLVFYDCEEVEAEANGLGR  136 (352)
T ss_pred             ccHHHHHHHHHHHHhh----ccCCCeEEEEEecccccCCcccHHH
Confidence            8999999999999993    3678999999999999764234433

>PRK00466 acetyl-lysine deacetylase; Validated

Probab=98.20  E-value=3.2e-06  Score=57.27  Aligned_cols=35  Identities=14%  Similarity=-0.006  Sum_probs=31.4

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++.++|++.|++.|.    +|.++|++|||+|+.
T Consensus        93 mKgg~aa~l~a~~~l~~~~~----~i~~~~~~dEE~g~~  127 (346)
T PRK00466         93 AKGPLISMIIAAWLLNEKGI----KVMVSGLADEESTSI  127 (346)
T ss_pred             cchHHHHHHHHHHHHHHcCC----CEEEEEEcCcccCCc
Confidence            89999999999999999873    489999999998764

>TIGR03320 ygeY M20/DapE family protein YgeY

Probab=98.18  E-value=2.9e-06  Score=58.34  Aligned_cols=38  Identities=8%  Similarity=-0.229  Sum_probs=35.2

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCC
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQN   38 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg   38 (58)
                      ||+++++.+.|++.|++.|..++.+|.+.+++|||.++
T Consensus       109 ~Kg~~aa~l~A~~~l~~~g~~~~~~i~~~~~~dEE~~~  146 (395)
T TIGR03320       109 QEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDCD  146 (395)
T ss_pred             ccchHHHHHHHHHHHHHcCCCCCceEEEEecccccccC
Confidence            89999999999999999998888899999999999754

Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.

>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional

Probab=98.16  E-value=5.4e-06  Score=58.40  Aligned_cols=37  Identities=14%  Similarity=-0.099  Sum_probs=33.5

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++++++++.|++.  .|+++|.+++++|||.|..
T Consensus       144 nasGvA~lLe~ar~l~~~--~~~~~I~fv~~~~EE~Gl~  180 (346)
T PRK10199        144 NAAGLGVMLELAERLKNV--PTEYGIRFVATSGEEEGKL  180 (346)
T ss_pred             cHHHHHHHHHHHHHHhhC--CCCCcEEEEEECCcccCcH
Confidence            799999999999999865  4788999999999999875

>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase

Probab=98.13  E-value=4.8e-06  Score=56.09  Aligned_cols=38  Identities=16%  Similarity=0.031  Sum_probs=32.7

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLA   44 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~   44 (58)
                      ||+++++.++|+++|++.+    .+|.+++++|||+|+.  |..
T Consensus        83 ~Kg~~aa~l~a~~~l~~~~----~~i~~~~~~dEE~g~~--G~~  120 (336)
T TIGR01902        83 AKGPLIAMIFATWLLNEKG----IKVIVSGLVDEESSSK--GAR  120 (336)
T ss_pred             CCcHHHHHHHHHHHHHhCC----CcEEEEEEeCcccCCc--cHH
Confidence            8999999999999998764    4799999999999774  544

This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.

>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase

Probab=97.99  E-value=1.8e-05  Score=54.52  Aligned_cols=37  Identities=8%  Similarity=-0.255  Sum_probs=34.1

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCC
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQ   37 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~G   37 (58)
                      ||+++++.+.|++.|.+.+..+++++.+++++|||++
T Consensus       109 ~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~  145 (395)
T TIGR03526       109 QEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDC  145 (395)
T ss_pred             cchhHHHHHHHHHHHHHcCCCCCceEEEEEecccccC
Confidence            8999999999999999998878889999999999953

SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.

>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.98  E-value=1.9e-05  Score=48.78  Aligned_cols=43  Identities=23%  Similarity=0.050  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHH
Q psy3109           3 CVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAA   46 (58)
Q Consensus         3 ~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~   46 (58)
                      ++++.+||.+|.|.+.+.+|+|+|.++|+..||.|-. +...++
T Consensus        29 sGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl~-GS~~~~   71 (179)
T PF04389_consen   29 SGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGLL-GSRAFV   71 (179)
T ss_dssp             HHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTSH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccCccEEEEEecccccCcc-chHHHH
Confidence            5789999999999998889999999999999998764 333333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....

>PLN02693 IAA-amino acid hydrolase

Probab=97.87  E-value=3.3e-05  Score=54.80  Aligned_cols=36  Identities=11%  Similarity=0.079  Sum_probs=32.6

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCC
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVT   36 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~   36 (58)
                      ||+.+++.+.|++.|++.+..++.+|.++|++|||.
T Consensus       137 hkg~~A~~l~Aa~~L~~~~~~~~g~V~~if~pdEE~  172 (437)
T PLN02693        137 HDGHVAMLLGAAKILQEHRHHLQGTVVLIFQPAEEG  172 (437)
T ss_pred             chHHHHHHHHHHHHHHhCcccCCceEEEEEEEcccc
Confidence            799999999999999998766678999999999993

>PRK08737 acetylornithine deacetylase; Provisional

Probab=97.86  E-value=2.6e-05  Score=53.82  Aligned_cols=36  Identities=11%  Similarity=0.045  Sum_probs=29.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLA   44 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~   44 (58)
                      ||+++++++.|++.       +..+|.++|++|||+|+. .|..
T Consensus       103 mKg~~aa~l~a~~~-------~~~~v~~~~~~dEE~g~~-~g~~  138 (364)
T PRK08737        103 IKGAAAALLAAANA-------GDGDAAFLFSSDEEANDP-RCVA  138 (364)
T ss_pred             chHHHHHHHHHHHc-------cCCCEEEEEEcccccCch-hhHH
Confidence            89999999999874       346899999999999885 3543

>TIGR01891 amidohydrolases amidohydrolase

Probab=97.74  E-value=7.1e-05  Score=51.00  Aligned_cols=36  Identities=14%  Similarity=0.092  Sum_probs=31.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCC
Q psy3109           2 KCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQ   37 (58)
Q Consensus         2 K~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~G   37 (58)
                      |+++++++.|++.|++.+.+++++|.++|++|||+|
T Consensus        92 ~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~  127 (363)
T TIGR01891        92 DLHTAILLGTAKLLKKLADLLEGTVRLIFQPAEEGG  127 (363)
T ss_pred             HHHHHHHHHHHHHHHhchhhCCceEEEEEeecCcCc
Confidence            577889999999999887777889999999999984

This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.

>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase

Probab=97.70  E-value=5.2e-05  Score=53.82  Aligned_cols=35  Identities=9%  Similarity=-0.064  Sum_probs=28.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++++++++.   .+ .+.++|.++|++|||+|+.
T Consensus       110 ~k~gva~~l~~~~~---~~-~~~~~i~~~~~~dEE~g~~  144 (477)
T TIGR01893       110 NGIGVAMGLAILED---NN-LKHPPLELLFTVDEETGMD  144 (477)
T ss_pred             ccHHHHHHHHHHhc---CC-CCCCCEEEEEEeccccCch
Confidence            79999999998775   33 3567999999999998764

>PRK15026 aminoacyl-histidine dipeptidase; Provisional

Probab=97.59  E-value=0.00013  Score=52.72  Aligned_cols=35  Identities=9%  Similarity=-0.050  Sum_probs=28.3

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||++++++++++   .+.++ +..+|.++|++|||+|+.
T Consensus       116 ~k~gva~~l~~l---~~~~~-~~~~i~~l~t~dEE~G~~  150 (485)
T PRK15026        116 NGIGMASALAVL---ADENV-VHGPLEVLLTMTEEAGMD  150 (485)
T ss_pred             cHHHHHHHHHHH---HhCCC-CCCCEEEEEEcccccCcH
Confidence            799999988776   44554 467899999999999875

>PLN02280 IAA-amino acid hydrolase

Probab=97.48  E-value=0.00022  Score=51.48  Aligned_cols=37  Identities=14%  Similarity=0.104  Sum_probs=33.3

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCC
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQ   37 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~G   37 (58)
                      ||+.+++++.|++.|.+.+..++.+|.++|.+|||+|
T Consensus       187 hd~~~A~~l~a~~~L~~~~~~~~g~V~~if~pdEE~g  223 (478)
T PLN02280        187 HDAHVAMLLGAAKILKSREHLLKGTVVLLFQPAEEAG  223 (478)
T ss_pred             CcHHHHHHHHHHHHHHhccccCCceEEEEeccccccc
Confidence            6889999999999999887777889999999999985

>PRK09961 exoaminopeptidase; Provisional

Probab=96.93  E-value=0.0025  Score=44.34  Aligned_cols=43  Identities=7%  Similarity=-0.010  Sum_probs=34.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAAN   47 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~   47 (58)
                      +|.+++.+++++++|++.  .+..+++++|+.-||+|..  |...++
T Consensus       167 nR~g~~~lle~l~~l~~~--~~~~~v~~~~tvqEEvG~r--Ga~~aa  209 (344)
T PRK09961        167 DRLGCYLLVTLLRELHDA--ELPAEVWLVASSSEEVGLR--GGQTAT  209 (344)
T ss_pred             hhHhHHHHHHHHHHhhhc--CCCceEEEEEEcccccchH--HHHHHH
Confidence            478999999999999765  4678999999999999875  444433

>KOG2195|consensus

Probab=96.58  E-value=0.0078  Score=45.98  Aligned_cols=39  Identities=13%  Similarity=-0.020  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHH
Q psy3109           8 YLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAAN   47 (58)
Q Consensus         8 ~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~   47 (58)
                      +-.++..+++.|++|+|||+++.|..||-|.. |..-++-
T Consensus       381 i~~~~~~~~k~gwrP~RtI~F~sWdAeEfGli-GStE~~E  419 (702)
T KOG2195|consen  381 IARALSKLKKRGWRPRRTILFASWDAEEFGLL-GSTEWAE  419 (702)
T ss_pred             HHHHHHHHHHcCCCccceEEEEEccchhcccc-ccHHHHH
Confidence            44566677899999999999999999998775 4444443

>TIGR03107 glu_aminopep glutamyl aminopeptidase

Probab=96.56  E-value=0.0058  Score=42.92  Aligned_cols=37  Identities=8%  Similarity=-0.031  Sum_probs=32.5

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      +|.+++.+++++++|++.  .++.+++++|+.-||+|..
T Consensus       179 dR~g~a~l~e~l~~l~~~--~~~~~l~~~~tvqEEvG~r  215 (350)
T TIGR03107       179 NRYGVLMILELLESLKDQ--ELPNTLIAGANVQEEVGLR  215 (350)
T ss_pred             cHHHHHHHHHHHHHhhhc--CCCceEEEEEEChhhcCch
Confidence            478999999999999875  4778999999999999874

This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes

>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.42  E-value=0.015  Score=39.88  Aligned_cols=41  Identities=15%  Similarity=0.089  Sum_probs=33.4

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHH
Q psy3109           2 KCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAA   46 (58)
Q Consensus         2 K~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~   46 (58)
                      +.+++.++++++.|++.+.  +.+++++|+.-||+|..  |...+
T Consensus       136 R~g~~~lle~l~~l~~~~~--~~~v~~v~tvqEEvG~r--GA~~a  176 (292)
T PF05343_consen  136 RAGCAVLLELLRELKEKEL--DVDVYFVFTVQEEVGLR--GAKTA  176 (292)
T ss_dssp             HHHHHHHHHHHHHHTTSS---SSEEEEEEESSCTTTSH--HHHHH
T ss_pred             hhHHHHHHHHHHHHhhcCC--CceEEEEEEeeeeecCc--ceeec
Confidence            6789999999999998753  38999999999999874  44433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....

>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]

Probab=96.20  E-value=0.0076  Score=42.81  Aligned_cols=37  Identities=8%  Similarity=-0.008  Sum_probs=33.4

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      +|.+++++++++++| + +..++.+++++|+.-||+|-.
T Consensus       181 dR~gva~lle~lk~l-~-~~~~~~~vy~v~tvqEEVGlr  217 (355)
T COG1363         181 DRAGVAALLELLKEL-K-GIELPADVYFVASVQEEVGLR  217 (355)
T ss_pred             chHhHHHHHHHHHHh-c-cCCCCceEEEEEecchhhccc
Confidence            488999999999999 5 778899999999999999864

>COG2234 Iap Predicted aminopeptidases [General function prediction only]

Probab=96.12  E-value=0.012  Score=40.93  Aligned_cols=35  Identities=17%  Similarity=-0.028  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           3 CVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         3 ~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ++++..+|..|.|+...  |+|+|.++++.-||.|..
T Consensus       231 sGva~llEiAr~l~~~~--p~~~v~f~~~~aEE~Gl~  265 (435)
T COG2234         231 SGVAALLELARVLKGNP--PKRTVRFVAFGAEESGLL  265 (435)
T ss_pred             HHHHHHHHHHHHHhcCC--CCceEEEEEecchhhccc
Confidence            57889999999998875  999999999999998775

>PRK09864 putative peptidase; Provisional

Probab=96.10  E-value=0.013  Score=41.40  Aligned_cols=35  Identities=6%  Similarity=-0.262  Sum_probs=31.0

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      +|.+++.++++++.|++    |..+++++|+.-||+|-.
T Consensus       176 nR~g~~~lle~l~~l~~----~~~~vy~v~TvQEEvGlr  210 (356)
T PRK09864        176 NRIGCAMMAELLQTVNN----PEITLYGVGSVEEEVGLR  210 (356)
T ss_pred             cHHHHHHHHHHHHHhhc----CCCeEEEEEEcchhcchH
Confidence            47899999999999965    778999999999999864

>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]

Probab=95.74  E-value=0.014  Score=42.12  Aligned_cols=46  Identities=13%  Similarity=0.065  Sum_probs=36.4

Q ss_pred             ChHHHHHHHHHHHHHHHcC-CCCCceEEEEeeCCCCCCChhhhHHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEG-KKFKRTIHVSFVPGPVTQNETCGLAAANS   48 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g-~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s   48 (58)
                      .|++++.++.|++.+.+.- -.|-.+|.+.|++|||.|+.  |...+..
T Consensus       145 ~kAGia~i~~al~~~~~~~~~i~h~~i~~g~s~~Ee~g~r--g~~~~~~  191 (414)
T COG2195         145 DKAGIAEIMTALSVLREKHPEIPHGGIRGGFSPDEEIGGR--GAANKDV  191 (414)
T ss_pred             chhHHHHHHHHHHHHhhcCccccccCeEEEecchHHhhhh--hhhhccH
Confidence            4899999999999999663 34668999999999999875  4444433

>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]

Probab=95.70  E-value=0.026  Score=42.04  Aligned_cols=38  Identities=16%  Similarity=0.141  Sum_probs=33.4

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||++++..+..++++.+.+ ..+-+|-++-+||||+.+.
T Consensus       141 MKsGlav~la~L~~fa~~~-~~~GNlLf~a~pdEE~~s~  178 (553)
T COG4187         141 MKSGLAVHLACLEEFAART-DRQGNLLFMAVPDEEVESR  178 (553)
T ss_pred             hhhhhHHHHHHHHHHhhCC-CCCCcEEEEeccchhhhcc
Confidence            9999999999999999984 4556899999999998764

>KOG2276|consensus

Probab=93.67  E-value=0.09  Score=38.74  Aligned_cols=39  Identities=10%  Similarity=0.105  Sum_probs=36.1

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      +|+=+++.++|++++++.|...+-+|.++|-.-||.||.
T Consensus       133 dkGPv~~wi~av~a~~~~g~~lpvnv~f~~EgmEEsgS~  171 (473)
T KOG2276|consen  133 DKGPVLSWIHAVKALQQLGIDLPVNVVFVFEGMEESGSE  171 (473)
T ss_pred             CCccchHHHHHHHHHHHhCccccceEEEEEEechhccCc
Confidence            477789999999999999998889999999999999997

>PRK02256 putative aminopeptidase 1; Provisional

Probab=93.64  E-value=0.14  Score=37.39  Aligned_cols=34  Identities=18%  Similarity=0.130  Sum_probs=25.6

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           2 KCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         2 K~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      +.++.++++|++.+.    .+..+++++++.-||+|+.
T Consensus       262 r~~~~~~leal~~~~----~~~~~~~~~~~dqEEVGs~  295 (462)
T PRK02256        262 RVCAYTSLEALLELE----NPEKTAVVLLVDKEEIGSE  295 (462)
T ss_pred             HHHHHHHHHHHHhcc----cCCCeEEEEEEcccccCCc
Confidence            456777777776553    3556888999999999986

>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]

Probab=90.27  E-value=0.39  Score=34.44  Aligned_cols=46  Identities=11%  Similarity=0.079  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHHHHHH
Q psy3109           5 GIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANSVLYL   52 (58)
Q Consensus         5 ~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s~~~~   52 (58)
                      .++.+-|.+.|.+....++-+|.++|-|-||.++  ++..++..-++.
T Consensus       108 ta~lLgaA~~L~~~~~~~~Gtv~~ifQPAEE~~~--Ga~~mi~~G~~~  153 (392)
T COG1473         108 TAILLGAALALAEHKDNLPGTVRLIFQPAEEGGG--GAKAMIEDGVFD  153 (392)
T ss_pred             HHHHHHHHHHHHhhhhhCCcEEEEEecccccccc--cHHHHHhcCCcc
Confidence            4667888888888755678899999999999874  455665554443

>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch

Probab=89.69  E-value=0.87  Score=30.50  Aligned_cols=34  Identities=9%  Similarity=0.127  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHc---CCCCCceEEEEeeCCCCC
Q psy3109           3 CVGIQYLETIRRYIAE---GKKFKRTIHVSFVPGPVT   36 (58)
Q Consensus         3 ~~~~~~leAl~~L~~~---g~~p~r~I~l~f~~DEE~   36 (58)
                      ++++..|+|++.|.+.   --.++|+|.++|+..|-.
T Consensus        27 sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~   63 (234)
T PF05450_consen   27 SGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESF   63 (234)
T ss_pred             HHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccc
Confidence            4778888888888765   235789999999999974

Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane

>PF02127 Peptidase_M18: Aminopeptidase I zinc metalloprotease (M18); InterPro: IPR001948 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=88.96  E-value=0.68  Score=33.64  Aligned_cols=35  Identities=11%  Similarity=0.002  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHcC---CCCC-ceEEEEeeCCCCCCCh
Q psy3109           5 GIQYLETIRRYIAEG---KKFK-RTIHVSFVPGPVTQNE   39 (58)
Q Consensus         5 ~~~~leAl~~L~~~g---~~p~-r~I~l~f~~DEE~Gg~   39 (58)
                      +++.+.++++|.+..   ..|. .+-.++++-.||+||.
T Consensus       237 l~s~~a~l~Al~~~~~~~~~~~~~~~v~~~fD~EEiGS~  275 (432)
T PF02127_consen  237 LASCYAALEALIDSSNDSLEPEDGTNVVVLFDNEEIGSE  275 (432)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCCSSSEEEEEEESSGGGTST
T ss_pred             HHHHHHHHHHHHhhhcccccccCceEEEEEEcccccCCC
Confidence            456677777777663   2466 4445556656999996

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M18, (clan MH). The proteins have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal aminoacid, usually neutral or hydrophobic, from a polypeptide []. The type example is aminopeptidase I from Saccharomyces cerevisiae (Baker's yeast), the sequence of which has been deduced, and the mature protein shown to consist of 469 amino acids []. A 45-residue presequence contains both positively- and negatively-charged and hydrophobic residues, which could be arranged in an N-terminal amphiphilic alpha-helix []. The presequence differs from signal sequences that direct proteins across bacterial plasma membranes and endoplasmic reticulum or into mitochondria. It is unclear how this unique presequence targets aminopeptidase I to yeast vacuoles, and how this sorting utilises classical protein secretory pathways [].; GO: 0004177 aminopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1Y7E_A 2GLJ_R 4DYO_A 2IJZ_B 3VAT_A 3VAR_A 2GLF_B.

>PRK02813 putative aminopeptidase 2; Provisional

Probab=88.77  E-value=0.58  Score=33.81  Aligned_cols=33  Identities=9%  Similarity=-0.112  Sum_probs=23.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           2 KCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         2 K~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      +.++...++|++.+..     ..+++++++--||+|+.
T Consensus       236 r~~~~~~l~al~~~~~-----~~~~~~~~~d~EEVGs~  268 (428)
T PRK02813        236 LSSCHAGLEALLAAAS-----DATNVLAAFDHEEVGSA  268 (428)
T ss_pred             HHHHHHHHHHHHhcCC-----CCeEEEEEEecCccCCC
Confidence            3456666666665432     56888999989999986

>KOG2194|consensus

Probab=85.47  E-value=1.1  Score=35.24  Aligned_cols=44  Identities=14%  Similarity=0.012  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHH
Q psy3109           3 CVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAAN   47 (58)
Q Consensus         3 ~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~   47 (58)
                      .+++.+||++|.+.+.....+++|.++|+.-||.+-. +..+++.
T Consensus       166 ~~va~mLe~lRv~s~~~~~l~~~vVFLfNgaEE~~L~-gsH~FIt  209 (834)
T KOG2194|consen  166 SGVASMLEALRVLSKSDKLLTHSVVFLFNGAEESGLL-GSHAFIT  209 (834)
T ss_pred             hHHHHHHHHHHHhhcCCCcccccEEEEecCcccchhh-hccccee
Confidence            4688999999999988666689999999999996543 3444443

>PTZ00371 aspartyl aminopeptidase; Provisional

Probab=85.08  E-value=1.2  Score=32.54  Aligned_cols=38  Identities=3%  Similarity=-0.061  Sum_probs=21.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCCceEEEEe-eCCCCCCCh
Q psy3109           2 KCVGIQYLETIRRYIAEGKKFKRTIHVSF-VPGPVTQNE   39 (58)
Q Consensus         2 K~~~~~~leAl~~L~~~g~~p~r~I~l~f-~~DEE~Gg~   39 (58)
                      +.++...++|+..+...-......+.+++ +--||+||.
T Consensus       253 r~~~~~~l~al~~~~~~~~~~~~~~~v~~~~d~EEVGs~  291 (465)
T PTZ00371        253 LGSSFCAFKALTEAVESLGENSSNIRMVCLFDHEEVGSS  291 (465)
T ss_pred             HHHHHHHHHHHHhccccccCCCCceEEEEEECCcCCCCC
Confidence            45666677777655421001134455555 666999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	58
1q7l_A	198	Zn-binding Domain Of The T347g Mutant Of Human Amin		6e-08

>pdb|1Q7L|A Chain A, Zn-binding Domain Of The T347g Mutant Of Human Aminoacylase- I Length = 198

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/32 (65%), Positives = 25/32 (78%)
Query: 1   MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
           MKCV IQYLE +RR   EG +F RTIH++FVP
Sbjct: 114 MKCVSIQYLEAVRRLKVEGHRFPRTIHMTFVP 145
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	58
1q7l_A	198	Aminoacylase-1; catalysis, enzyme dimerization, si	2e-09

>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 Length = 198

 Score = 49.0 bits (117), Expect = 2e-09
 Identities = 21/32 (65%), Positives = 25/32 (78%)

Query: 1   MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVP 32
           MKCV IQYLE +RR   EG +F RTIH++FVP
Sbjct: 114 MKCVSIQYLEAVRRLKVEGHRFPRTIHMTFVP 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	58
1q7l_A	198	Aminoacylase-1; catalysis, enzyme dimerization, si	99.02
4h2k_A	269	Succinyl-diaminopimelate desuccinylase; DAPE, MCSG	98.81
3t68_A	268	Succinyl-diaminopimelate desuccinylase; DAPE, csgi	98.8
1lfw_A	470	PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bac	98.75
2zog_A	479	Cytosolic non-specific dipeptidase; metallopeptida	98.73
1rtq_A	299	Bacterial leucyl aminopeptidase; bimetallic, zinc,	98.72
1vgy_A	393	Succinyl-diaminopimelate desuccinylase; structural	98.71
1tkj_A	284	Aminopeptidase, SGAP; double-zinc metalloproteinas	98.68
3khx_A	492	Putative dipeptidase sacol1801; DAPE, metallopepti	98.67
1cg2_A	393	Carboxypeptidase G2; metallocarboxypeptidase, hydr	98.66
2pok_A	481	Peptidase, M20/M25/M40 family; M20 family peptidas	98.64
3dlj_A	485	Beta-Ala-His dipeptidase; CNDP1, carnosine dipepti	98.63
2gre_A	349	Deblocking aminopeptidase; structural genomi prote	98.6
3pfo_A	433	Putative acetylornithine deacetylase; metal bindin	98.59
3pfe_A	472	Succinyl-diaminopimelate desuccinylase; metal bind	98.57
3ife_A	434	Peptidase T; metallopeptidase, aminopeptidase, hyd	98.55
3isz_A	377	Succinyl-diaminopimelate desuccinylase; DAPE, Zn-b	98.55
2v8h_A	474	Beta-alanine synthase; amidohydrolase, alpha and b	98.54
3ct9_A	356	Acetylornithine deacetylase; NP_812461.1, A putati	98.48
3tx8_A	369	Succinyl-diaminopimelate desuccinylase; peptidase,	98.47
1vhe_A	373	Aminopeptidase/glucanase homolog; structural genom	98.45
1z2l_A	423	Allantoate amidohydrolase; ALLC, purine cataboli a	98.43
1fno_A	417	Peptidase T; metallo peptidase, protease, hydrolas	98.42
2wyr_A	332	Cobalt-activated peptidase TET1; hydrolase, large	98.42
3gux_A	314	Putative Zn-dependent exopeptidase; aminopeptidase	98.41
3tc8_A	309	Leucine aminopeptidase; phosphorylase/hydrolase-li	98.4
2rb7_A	364	Peptidase, M20/M25/M40 family; YP_387682.1, CO-cat	98.39
3gb0_A	373	Peptidase T; NP_980509.1, aminopeptidase PEPT, pep	98.38
3n5f_A	408	L-carbamoylase, N-carbamoyl-L-amino acid hydrolase	98.33
3rza_A	396	Tripeptidase; phosphorylase/hydrolase-like, struct	98.33
1xmb_A	418	IAA-amino acid hydrolase homolog 2; structural gen	98.3
3iib_A	444	Peptidase M28; YP_926796.1, structural genomics, J	98.28
1y0y_A	353	FRV operon protein FRVX; aminopeptidase, PDZ, hydr	98.26
2fvg_A	340	Endoglucanase; TM1049, structural genomics, joint	98.18
2afw_A	329	Glutaminyl-peptide cyclotransferase; alpha-beta pr	98.17
1ysj_A	404	Protein YXEP; M20 family peptidase, dinuclear meta	98.15
3io1_A	445	Aminobenzoyl-glutamate utilization protein; peptid	97.99
2f7v_A	369	Aectylcitrulline deacetylase; alpha/beta, hydrolas	97.95
2ek8_A	421	Aminopeptidase; metalloproteinase, hydrolase; 1.80	97.9
4f9u_A	312	CG32412; alpha/beta hydrolase, PGlu formation, PE,	97.77
1ylo_A	348	Hypothetical protein SF2450; structural genomics,	97.66
2qyv_A	487	XAA-His dipeptidase; YP_718209.1, structural genom	97.61
4fai_A	330	CG5976, isoform B; alpha/beta hydrolase, PGlu form	97.59
3fed_A	707	Glutamate carboxypeptidase III; metallopeptidase,	97.54
3mru_A	490	Aminoacyl-histidine dipeptidase; metalloprotease,	97.53
1vho_A	346	Endoglucanase; structural genomics, unknown functi	97.5
3kas_A	640	Transferrin receptor protein 1; transferrin recept	97.44
3pb6_X	330	Glutaminyl-peptide cyclotransferase-like protein;	97.37
3ram_A	394	HMRA protein; two-domain, catalytic (alpha-beta-al	97.36
3kl9_A	355	PEPA, glutamyl aminopeptidase; tetrahedral aminope	97.27
4fuu_A	309	Leucine aminopeptidase; phosphorylase/hydrolase li	97.2
3cpx_A	321	Aminopeptidase, M42 family; YP_676701.1, putative	97.05
2vpu_A	354	TET3, 354AA long hypothetical operon protein FRV;	96.72
3isx_A	343	Endoglucanase; TM1050, structural genomics, joint	95.5
1y7e_A	458	Probable M18-family aminopeptidase 1; aminopeptida	93.98
2glj_A	461	Probable M18-family aminopeptidase 1; aminopeptida	93.8
2glf_A	450	Probable M18-family aminopeptidase 1; putative, NY	91.9
3k9t_A	435	Putative peptidase; structural genomics, joint cen	86.91
2ijz_A	428	Probable M18-family aminopeptidase 2; putative ami	85.58

>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4

Probab=99.02  E-value=5.8e-10  Score=69.78  Aligned_cols=46  Identities=46%  Similarity=0.725  Sum_probs=39.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAA   46 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~   46 (58)
                      ||+++++.++|++.|++.+..|+++|+++|++|||+|+..+...++
T Consensus       114 ~K~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~~~Ga~~~~  159 (198)
T 1q7l_A          114 MKCVSIQYLEAVRRLKVEGHRFPRTIHMTFVPDEEVGGHQGMELFV  159 (198)
T ss_dssp             THHHHHHHHHHHHHHHHTTCCCSSCEEEEEESCGGGTSTTTHHHHT
T ss_pred             chHHHHHHHHHHHHHHHcCCCCCCCEEEEEEcccccCccccHHHHH
Confidence            8999999999999999999889999999999999998653333333

>4h2k_A Succinyl-diaminopimelate desuccinylase; DAPE, MCSG, PSI-biology, structural genomics, midwest center structural genomics, hydrolase; 1.84A {Haemophilus influenzae}

Probab=98.81  E-value=1.7e-08  Score=65.49  Aligned_cols=47  Identities=15%  Similarity=0.131  Sum_probs=40.3

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANS   48 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s   48 (58)
                      ||+++++.++|++.|++.+..++++|.++|++|||+|+. .|...+..
T Consensus       104 ~k~g~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~-~Ga~~~~~  150 (269)
T 4h2k_A          104 MKGSLAAMIVAAEEYVKANPNHKGTIALLITSDEEATAK-DGTIHVVE  150 (269)
T ss_dssp             THHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCT-TSHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHhCCCCCccEEEEEEeccccCcc-cCHHHHHH
Confidence            899999999999999999888889999999999999875 35544443

>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A

Probab=98.80  E-value=1.8e-08  Score=65.15  Aligned_cols=47  Identities=17%  Similarity=0.113  Sum_probs=40.3

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANS   48 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s   48 (58)
                      ||+++++.++|++.|++.+..++++|+++|++|||+|+. .|...+..
T Consensus       104 ~k~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~~-~Ga~~~~~  150 (268)
T 3t68_A          104 MKGSLACMIVAVERFIAEHPDHQGSIGFLITSDEEGPFI-NGTVRVVE  150 (268)
T ss_dssp             THHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCTTSSSC-CHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCccCcc-cCHHHHHH
Confidence            899999999999999999888889999999999999885 35544443

>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1

Probab=98.75  E-value=2.1e-08  Score=68.51  Aligned_cols=39  Identities=15%  Similarity=-0.029  Sum_probs=36.9

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++.++|++.|++.+..++++|.++|++|||+|+.
T Consensus       120 ~K~~~a~~l~a~~~l~~~~~~~~~~i~~i~~~~EE~g~~  158 (470)
T 1lfw_A          120 DKGPSLTAYYGMLLLKEAGFKPKKKIDFVLGTNEETNWV  158 (470)
T ss_dssp             SHHHHHHHHHHHHHHHHHTCCCSSEEEEEEESCTTTTCH
T ss_pred             ChHHHHHHHHHHHHHHHcCCCCCCCEEEEEecCcccCCc
Confidence            899999999999999999988999999999999999874

>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A*

Probab=98.73  E-value=2.5e-08  Score=68.26  Aligned_cols=46  Identities=9%  Similarity=0.014  Sum_probs=39.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAAN   47 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~   47 (58)
                      ||++++++++|++.|++.+.+++++|.++|++|||+|+. +...++.
T Consensus       137 ~K~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~~-Ga~~~~~  182 (479)
T 2zog_A          137 DKGPVAGWMNALEAYQKTGQEIPVNLRFCLEGMEESGSE-GLDELIF  182 (479)
T ss_dssp             THHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCGGGTCT-THHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccccCCc-cHHHHHH
Confidence            899999999999999999988999999999999999874 4444443

>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ...

Probab=98.72  E-value=3.4e-08  Score=64.99  Aligned_cols=39  Identities=15%  Similarity=-0.062  Sum_probs=36.9

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++++++++.|++.+.+|+++|+++|+.|||.|..
T Consensus       118 ~~~g~a~~l~~~~~l~~~~~~~~~~i~~~~~~~EE~g~~  156 (299)
T 1rtq_A          118 DASGIAAVTEVIRVLSENNFQPKRSIAFMAYAAEEVGLR  156 (299)
T ss_dssp             THHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTSH
T ss_pred             cHHHHHHHHHHHHHHHHcCCCCCceEEEEEECCccCCch
Confidence            799999999999999999999999999999999999764

>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1

Probab=98.71  E-value=5e-08  Score=65.41  Aligned_cols=44  Identities=14%  Similarity=0.178  Sum_probs=38.4

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAA   45 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~   45 (58)
                      ||+++++.++|++.|++.+..|+++|.++|++|||+|+. .|...
T Consensus       104 ~k~~~aa~l~a~~~l~~~~~~~~~~v~~~~~~~EE~~~~-~Ga~~  147 (393)
T 1vgy_A          104 MKTSIACFVTACERFVAKHPNHQGSIALLITSDEEGDAL-DGTTK  147 (393)
T ss_dssp             THHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCT-TSHHH
T ss_pred             chHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeccccCCc-CCHHH
Confidence            799999999999999999888899999999999998764 34433

>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A

Probab=98.68  E-value=4.5e-08  Score=64.07  Aligned_cols=39  Identities=10%  Similarity=-0.049  Sum_probs=36.6

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++++++++.|++.+.+|+++|+++|++|||.|..
T Consensus        98 ~~~g~a~~l~~~~~l~~~~~~~~~~i~~~~~~~EE~g~~  136 (284)
T 1tkj_A           98 NGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGLI  136 (284)
T ss_dssp             THHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTSH
T ss_pred             ChHHHHHHHHHHHHHHhcCCCCCceEEEEEECCcccCCc
Confidence            799999999999999999989999999999999998764

>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A

Probab=98.67  E-value=4.1e-08  Score=68.40  Aligned_cols=39  Identities=15%  Similarity=0.070  Sum_probs=37.4

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++.++|++.|++.+..++++|.++|++|||+|+.
T Consensus       139 ~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~  177 (492)
T 3khx_A          139 DKGPTIAAYYAIKILEDMNVDWKKRIHMIIGTDEESDWK  177 (492)
T ss_dssp             THHHHHHHHHHHHHHHHTTCCCSSEEEEEEECCTTCCCC
T ss_pred             CcHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCccCCCc
Confidence            899999999999999999988899999999999999985

>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1

Probab=98.66  E-value=5.4e-08  Score=65.26  Aligned_cols=46  Identities=17%  Similarity=-0.008  Sum_probs=39.2

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAAN   47 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~   47 (58)
                      ||+++++.++|++.|++.+..|+++|.++|++|||+|+. +...++.
T Consensus       120 ~k~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~~-G~~~~~~  165 (393)
T 1cg2_A          120 DKGGNAVILHTLKLLKEYGVRDYGTITVLFNTDEEKGSF-GSRDLIQ  165 (393)
T ss_dssp             THHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCGGGTTT-TTHHHHH
T ss_pred             chHHHHHHHHHHHHHHhcCCCCCCCEEEEEEcccccCCc-cHHHHHH
Confidence            799999999999999999988878999999999999874 4444443

>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae}

Probab=98.64  E-value=6.2e-08  Score=66.69  Aligned_cols=47  Identities=11%  Similarity=0.003  Sum_probs=39.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANS   48 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s   48 (58)
                      ||+++++.++|++.|++.+..|+++|.++|++|||+|+. +...++..
T Consensus       148 ~k~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~~-g~~~~~~~  194 (481)
T 2pok_A          148 DKGHITARLSALRKYMQHHDDLPVNISFIMEGAEESAST-DLDKYLEK  194 (481)
T ss_dssp             THHHHHHHHHHHHHHHHTCSSCSSEEEEEEESCGGGTTT-THHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccCch-hHHHHHHH
Confidence            799999999999999998667889999999999999875 44455443

>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens}

Probab=98.63  E-value=6.8e-08  Score=66.78  Aligned_cols=46  Identities=7%  Similarity=-0.021  Sum_probs=40.0

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAAN   47 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~   47 (58)
                      ||+++++.++|++.|++.+..++++|.++|++|||+|+. +...++.
T Consensus       144 ~k~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~~-g~~~~~~  189 (485)
T 3dlj_A          144 NKGPVLAWINAVSAFRALEQDLPVNIKFIIEGMEEAGSV-ALEELVE  189 (485)
T ss_dssp             THHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCGGGTTT-THHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCccEEEEEEcccccCCc-cHHHHHH
Confidence            899999999999999999988999999999999999875 4444443

>2gre_A Deblocking aminopeptidase; structural genomi protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4

Probab=98.60  E-value=5.5e-08  Score=65.05  Aligned_cols=39  Identities=18%  Similarity=0.066  Sum_probs=33.3

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||++++++++|++.|++.+..|+++|+++|++|||+|+.
T Consensus       187 ~k~g~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~G~~  225 (349)
T 2gre_A          187 DKVSVAILLKLIKRLQDENVTLPYTTHFLISNNEEIGYG  225 (349)
T ss_dssp             THHHHHHHHHHHHHHHHHTCCCSEEEEEEEESCC----C
T ss_pred             chHHHHHHHHHHHHHHhccCCCCceEEEEEECcccCCch
Confidence            799999999999999999988999999999999999874

>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris}

Probab=98.59  E-value=5.6e-08  Score=65.68  Aligned_cols=39  Identities=15%  Similarity=0.081  Sum_probs=36.7

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++.++|++.|++.+..++++|.++|++|||+|+.
T Consensus       145 ~k~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~~  183 (433)
T 3pfo_A          145 MKGGVSAMIFALDAIRTAGYAPDARVHVQTVTEEESTGN  183 (433)
T ss_dssp             THHHHHHHHHHHHHHHHTTEEESSCEEEEEESCTTTTCH
T ss_pred             hhHHHHHHHHHHHHHHHcCCCCCccEEEEEEecCccCCh
Confidence            799999999999999999888889999999999999874

>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp}

Probab=98.57  E-value=8.8e-08  Score=66.12  Aligned_cols=46  Identities=9%  Similarity=-0.101  Sum_probs=39.3

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANS   48 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s   48 (58)
                      ||+++++.+.|++.|++.+..++ +|.++|++|||+|+. +...++..
T Consensus       131 ~K~~~a~~l~a~~~l~~~~~~~~-~v~~~~~~~EE~g~~-g~~~~~~~  176 (472)
T 3pfe_A          131 DGYSAYASLTAIRALEQQGLPYP-RCILIIEACEESGSY-DLPFYIEL  176 (472)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCCCE-EEEEEEESCGGGTST-THHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHcCCCCC-cEEEEEEeCCCCCCh-hHHHHHHH
Confidence            89999999999999999998777 999999999999885 55555443

>3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis}

Probab=98.55  E-value=4.8e-08  Score=66.60  Aligned_cols=37  Identities=16%  Similarity=0.128  Sum_probs=35.4

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCC
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQ   37 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~G   37 (58)
                      ||++++++++|++.|++.+..|+++|.++|++|||+|
T Consensus       167 ~K~gva~~l~a~~~L~~~~~~~~~~i~~if~~~EE~g  203 (434)
T 3ife_A          167 DKAGLTEIMVAMNYLIHNPQIKHGKIRVAFTPDEEIG  203 (434)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTSCBCCEEEEEESCGGGT
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCCCCEEEEEECCcccC
Confidence            7999999999999999998889999999999999987

>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A

Probab=98.55  E-value=2.7e-07  Score=60.71  Aligned_cols=39  Identities=15%  Similarity=0.169  Sum_probs=36.3

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++.++|++.|++.+..++++|.++|++|||+|+.
T Consensus       101 ~k~g~~~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~~~~  139 (377)
T 3isz_A          101 MKGSLAAMIVAAEEYVKANPNHKGTIALLITSDEEATAK  139 (377)
T ss_dssp             THHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCS
T ss_pred             hhHHHHHHHHHHHHHHHhCCCCCceEEEEEEcccccCcc
Confidence            799999999999999999888899999999999998764

>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A

Probab=98.54  E-value=1e-07  Score=65.98  Aligned_cols=37  Identities=11%  Similarity=-0.082  Sum_probs=35.2

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCC
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQ   37 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~G   37 (58)
                      ||++++++++|++.|++.+..|+++|.++|++|||++
T Consensus       125 ~k~gvaa~L~a~~~L~~~~~~~~~~v~lif~~dEE~~  161 (474)
T 2v8h_A          125 GILGVLAGLEVLRTFKDNNYVPNYDVCVVVWFNAEGA  161 (474)
T ss_dssp             THHHHHHHHHHHHHHHHHTCCCSSCEEEEECTTCSCS
T ss_pred             CHHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCccCC
Confidence            7999999999999999999889999999999999984

>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.48  E-value=2.1e-07  Score=61.97  Aligned_cols=37  Identities=5%  Similarity=-0.084  Sum_probs=33.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCC-CCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVT-QNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~-Gg~   39 (58)
                      ||+++++.++|++.|++.+  |+++|.++|++|||+ |+.
T Consensus       106 ~k~g~a~~l~a~~~l~~~~--~~~~v~~~~~~~EE~~g~~  143 (356)
T 3ct9_A          106 AGASVVSLLQVFLQLCRTS--QNYNLIYLASCEEEVSGKE  143 (356)
T ss_dssp             THHHHHHHHHHHHHHTTSC--CSSEEEEEEECCGGGTCTT
T ss_pred             chHHHHHHHHHHHHHHhcC--CCCCEEEEEEeCcccCCcc
Confidence            7999999999999999987  789999999999998 543

>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum}

Probab=98.47  E-value=3.6e-07  Score=60.54  Aligned_cols=43  Identities=19%  Similarity=0.189  Sum_probs=36.2

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLA   44 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~   44 (58)
                      ||+++++.++|++.|++. ..++++|.++|++|||+|+...|..
T Consensus       104 ~K~~~a~~l~a~~~l~~~-~~~~~~v~~~~~~~EE~g~~~~G~~  146 (369)
T 3tx8_A          104 MKSGLAVYLHTFATLATS-TELKHDLTLIAYECEEVADHLNGLG  146 (369)
T ss_dssp             THHHHHHHHHHHHHHTSC-TTCCSEEEEEEECCCSSCTTSCHHH
T ss_pred             chHHHHHHHHHHHHHHhh-cCCCccEEEEEEeccccCcccccHH
Confidence            899999999999999875 4678999999999999987422443

>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4

Probab=98.45  E-value=3.9e-07  Score=61.44  Aligned_cols=42  Identities=7%  Similarity=-0.077  Sum_probs=36.0

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAA   46 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~   46 (58)
                      ||+++++.++|++.|++.+  |+++|.++|+.|||+|+.  |...+
T Consensus       185 ~k~g~a~~l~a~~~l~~~~--~~~~v~~~~~~~EE~G~~--G~~~~  226 (373)
T 1vhe_A          185 NRIGCAIAIDVLRNLQNTD--HPNIVYGVGTVQEEVGLR--GAKTA  226 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTSC--CSSEEEEEEESCCTTTSH--HHHHH
T ss_pred             cHHHHHHHHHHHHHHhhcC--CCceEEEEEECCcccChh--hHHHH
Confidence            7999999999999999875  669999999999999885  44433

>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A

Probab=98.43  E-value=2.2e-07  Score=62.65  Aligned_cols=37  Identities=11%  Similarity=-0.075  Sum_probs=35.0

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCC
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQ   37 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~G   37 (58)
                      ||+++++.++|++.|++.+..|+++|.++|++|||++
T Consensus        95 ~k~g~a~~l~a~~~l~~~~~~~~~~v~~i~~~~EE~~  131 (423)
T 1z2l_A           95 GQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGS  131 (423)
T ss_dssp             THHHHHHHHHHHHHHHHHHCSCSEEEEEEEESCSSCC
T ss_pred             CHHHHHHHHHHHHHHHHcCCCCCCCEEEEEEcCcccc
Confidence            6899999999999999999889999999999999985

>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A

Probab=98.42  E-value=1.6e-07  Score=63.33  Aligned_cols=36  Identities=14%  Similarity=0.091  Sum_probs=34.1

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCC
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQ   37 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~G   37 (58)
                      ||++++++++|++.|++.+ .|+++|+++|++|||+|
T Consensus       141 ~K~g~a~~l~a~~~l~~~~-~~~~~v~~~~~~~EE~g  176 (417)
T 1fno_A          141 DKAGVAEIMTALAVLKGNP-IPHGDIKVAFTPDEEVG  176 (417)
T ss_dssp             HHHHHHHHHHHHHHHHSSS-CCCCCEEEEEESCGGGT
T ss_pred             cHHhHHHHHHHHHHHHhCC-CCCCcEEEEEEeccccC
Confidence            7999999999999999998 78899999999999986

>2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled dodecamer, hyperthermophilic; 2.24A {Pyrococcus horikoshii} PDB: 2cf4_A

Probab=98.42  E-value=1.6e-07  Score=62.03  Aligned_cols=37  Identities=8%  Similarity=0.132  Sum_probs=33.9

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++.++|++.|++.+  ++++|.++|+.|||+|+.
T Consensus       174 ~k~g~a~~l~a~~~l~~~~--~~~~i~~~~~~~EE~G~~  210 (332)
T 2wyr_A          174 DRFGVVALIEAIKDLVDHE--LEGKVIFAFTVQEEVGLK  210 (332)
T ss_dssp             HHHHHHHHHHHHHTTTTSC--CSSEEEEEEESCGGGTSH
T ss_pred             cHHHHHHHHHHHHHHhhcC--CCceEEEEEECccccCcc
Confidence            7999999999999998876  668999999999999875

>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482}

Probab=98.41  E-value=5.5e-07  Score=60.64  Aligned_cols=37  Identities=16%  Similarity=-0.071  Sum_probs=32.2

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||++++++|++++.|.+.+  |+++|.++|+.+||.|.+
T Consensus       130 ~~sGva~~Le~ar~l~~~~--~~~~i~fv~~~~EE~Gl~  166 (314)
T 3gux_A          130 GASGVGVLLEIARQIQKEQ--PALGIDIVFFDSEDYGIP  166 (314)
T ss_dssp             CHHHHHHHHHHHHHHHHSC--CSSEEEEEEECSCCC---
T ss_pred             cHHHHHHHHHHHHHHHhCC--CCCcEEEEEECCcccccc
Confidence            6899999999999999885  899999999999999873

>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis}

Probab=98.40  E-value=4.2e-07  Score=60.89  Aligned_cols=36  Identities=14%  Similarity=-0.078  Sum_probs=33.7

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCC
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQN   38 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg   38 (58)
                      ||++++++|++++.|.+.+  |+++|.++|+.+||.|.
T Consensus       128 ~~sGva~~Le~ar~l~~~~--~~~~i~f~~~~~EE~Gl  163 (309)
T 3tc8_A          128 GGSGVGALLEIARQIGQKA--PGIGIDIIFFDAEDYGT  163 (309)
T ss_dssp             THHHHHHHHHHHHHHHHSC--CSSEEEEEEECSCSCSC
T ss_pred             chHhHHHHHHHHHHHHhCC--CCCcEEEEEECcccccc
Confidence            6899999999999999885  89999999999999987

>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp}

Probab=98.39  E-value=1.9e-07  Score=62.38  Aligned_cols=39  Identities=10%  Similarity=-0.057  Sum_probs=34.3

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCC---Cce--EEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKF---KRT--IHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p---~r~--I~l~f~~DEE~Gg~   39 (58)
                      ||+++++.++|++.|++.+..+   +++  |.++|++|||+||.
T Consensus       101 ~k~~~a~~l~a~~~l~~~~~~~~~~~g~~~v~~~~~~~EE~~g~  144 (364)
T 2rb7_A          101 DKYAVALGLVMFRDRLNALKAAGRSQKDMALGLLITGDEEIGGM  144 (364)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEESCGGGTST
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCcccCCCccEEEEEEeccccCch
Confidence            7999999999999999987666   457  99999999998765

>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987}

Probab=98.38  E-value=3.7e-07  Score=60.60  Aligned_cols=38  Identities=18%  Similarity=0.024  Sum_probs=34.6

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++.++|++.|++.+. |+++|.++|++|||+|+.
T Consensus       109 ~k~g~a~~l~a~~~l~~~~~-~~~~v~~~~~~~EE~g~~  146 (373)
T 3gb0_A          109 DKAGLASMFEAIRVLKEKNI-PHGTIEFIITVGEESGLV  146 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC-CCCCEEEEEESCGGGTSH
T ss_pred             cHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccccCch
Confidence            69999999999999999885 789999999999998763

>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus}

Probab=98.33  E-value=7.4e-07  Score=60.08  Aligned_cols=37  Identities=11%  Similarity=-0.024  Sum_probs=34.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCC
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQ   37 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~G   37 (58)
                      ||+++++.+++++.|++.+..|+++|.++|++|||.+
T Consensus        91 ~~~g~a~~l~~~~~l~~~~~~~~~~i~~~~~~~EE~~  127 (408)
T 3n5f_A           91 GPLGVLAGVEVVQTMNEHGVVTHHPIEVVAFTDEEGA  127 (408)
T ss_dssp             THHHHHHHHHHHHHHHHTTCCCSSCEEEEEESCSSCT
T ss_pred             CHHHHHHHHHHHHHHHHcCCCCCCCEEEEEEcCcccc
Confidence            7999999999999999999889999999999999964

>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp}

Probab=98.33  E-value=4.8e-07  Score=60.82  Aligned_cols=38  Identities=13%  Similarity=-0.034  Sum_probs=34.5

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++.++|++.|++.+. |+++|.++|++|||+|+.
T Consensus       130 ~k~g~a~~l~a~~~l~~~~~-~~~~v~~~~~~~EE~g~~  167 (396)
T 3rza_A          130 DKAGLAAMLEVLQVIKEQQI-PHGQIQFVITVGEESGLI  167 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC-CCCCEEEEEESCGGGTSH
T ss_pred             cHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEcccccccH
Confidence            69999999999999999875 778999999999999764

>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A

Probab=98.30  E-value=8.4e-07  Score=60.20  Aligned_cols=38  Identities=11%  Similarity=0.051  Sum_probs=34.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++.++|++.|++.+..++++|.++|++||| |+.
T Consensus       118 ~d~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE-g~~  155 (418)
T 1xmb_A          118 HDGHVTMLLGAAKILHEHRHHLQGTVVLIFQPAEE-GLS  155 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHTGGGCSSEEEEEEECCTT-TTC
T ss_pred             chHHHHHHHHHHHHHHhccccCCceEEEEEecccc-ccc
Confidence            47899999999999999988899999999999999 763

>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}

Probab=98.28  E-value=1.5e-06  Score=60.39  Aligned_cols=39  Identities=13%  Similarity=-0.060  Sum_probs=36.2

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ++++++++|++++.|.+.+++|+|+|+++|+.+||.|..
T Consensus       270 ~~sG~a~~le~a~~l~~~~~~~~~~i~f~~~~~EE~gl~  308 (444)
T 3iib_A          270 DGAGVAIVTAAAKHILDLPQKPERTIRVVLYAAEELGLL  308 (444)
T ss_dssp             THHHHHHHHHHHHHHHTSSSCCSEEEEEEEESCGGGTSH
T ss_pred             chHHHHHHHHHHHHHHhcCCCCCCeEEEEEECCcccCCc
Confidence            578999999999999999999999999999999998753

>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4 PDB: 1y0r_A* 1xfo_A

Probab=98.26  E-value=9.5e-07  Score=58.99  Aligned_cols=35  Identities=9%  Similarity=-0.075  Sum_probs=32.0

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||++++++++|++.|++    |+++|+++|+.|||+|+.
T Consensus       183 ~k~g~a~~l~a~~~l~~----~~~~i~~~~~~~EE~g~~  217 (353)
T 1y0y_A          183 DRIAVYTILEVAKQLKD----AKADVYFVATVQEEVGLR  217 (353)
T ss_dssp             HHHHHHHHHHHHHHCCS----CSSEEEEEEESCCTTTSH
T ss_pred             cHHHHHHHHHHHHHhhc----CCCeEEEEEECCcccchh
Confidence            79999999999999876    778999999999999875

>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4

Probab=98.18  E-value=8.9e-07  Score=58.85  Aligned_cols=35  Identities=6%  Similarity=-0.090  Sum_probs=28.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++.++|++.|+    .|+++|+++|+.|||+|+.
T Consensus       168 ~k~g~a~~l~a~~~l~----~~~~~i~~~~~~~EE~G~~  202 (340)
T 2fvg_A          168 DRAGCSVLIDVLESGV----SPAYDTYFVFTVQEETGLR  202 (340)
T ss_dssp             HHHHHHHHHHHHHTCC----CCSEEEEEEEECCCC----
T ss_pred             cHHHHHHHHHHHHHhh----ccCCcEEEEEEcccccchh
Confidence            7999999999999987    4789999999999999875

>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ...

Probab=98.17  E-value=3.8e-06  Score=56.13  Aligned_cols=36  Identities=17%  Similarity=0.128  Sum_probs=31.3

Q ss_pred             ChHHHHHHHHHHHHHHHc--------CCCCCceEEEEeeCCCCC
Q psy3109           1 MKCVGIQYLETIRRYIAE--------GKKFKRTIHVSFVPGPVT   36 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~--------g~~p~r~I~l~f~~DEE~   36 (58)
                      ||+++++++++++.|.+.        |.+|+++|.++|+.+||.
T Consensus       128 ~~sGva~~le~ar~l~~~~~~~~~~~g~~~~~~i~~~~~~~EE~  171 (329)
T 2afw_A          128 SAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEA  171 (329)
T ss_dssp             THHHHHHHHHHHHHTHHHHHTTC------CCEEEEEEEESCCSC
T ss_pred             chhhHHHHHHHHHHHHHHHhhhcccccCCCCccEEEEEecCccc
Confidence            689999999999999886        568999999999999997

>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1

Probab=98.15  E-value=2.6e-06  Score=57.52  Aligned_cols=36  Identities=14%  Similarity=0.098  Sum_probs=33.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCC
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVT   36 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~   36 (58)
                      ||+++++.++|++.|++.+..|+++|.++|++|||+
T Consensus       124 ~kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~  159 (404)
T 1ysj_A          124 HDFHTASIIGTAMLLNQRRAELKGTVRFIFQPAEEI  159 (404)
T ss_dssp             HHHHHHHHHHHHHHHHTCGGGCSSEEEEEEESCTTT
T ss_pred             ChHHHHHHHHHHHHHHhccccCCceEEEEEeccccc
Confidence            589999999999999998888999999999999998

>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp}

Probab=97.99  E-value=9.4e-06  Score=55.70  Aligned_cols=35  Identities=11%  Similarity=0.017  Sum_probs=32.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCC
Q psy3109           2 KCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVT   36 (58)
Q Consensus         2 K~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~   36 (58)
                      |+.+++.+.|++.|++.+..++++|.++|++|||.
T Consensus       152 d~~~a~~l~aa~~L~~~~~~~~g~v~l~f~p~EE~  186 (445)
T 3io1_A          152 DGHTAIGLGLAHVLKQYAAQLNGVIKLIFQPAEEG  186 (445)
T ss_dssp             CTHHHHHHHHHHHHHHTGGGCCSEEEEEEESCTTT
T ss_pred             hHHHHHHHHHHHHHHhCcCcCCceEEEEEeccccc
Confidence            56789999999999998888999999999999994

>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A

Probab=97.95  E-value=8.2e-06  Score=54.30  Aligned_cols=31  Identities=6%  Similarity=0.003  Sum_probs=28.0

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCC-CC
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVT-QN   38 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~-Gg   38 (58)
                      ||+++++.++|++.       |+++|.++|++|||+ |+
T Consensus       107 ~k~g~a~~l~a~~~-------~~~~v~~~~~~~EE~~g~  138 (369)
T 2f7v_A          107 IKGAAAALVAAANA-------GDGDAAFLFSSDEEANDP  138 (369)
T ss_dssp             THHHHHHHHHHHTT-------CCCCEEEEEESCTTSSSC
T ss_pred             ccHHHHHHHHHHhc-------CCCCEEEEEEeCcccCCC
Confidence            89999999999986       778999999999999 44

>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*

Probab=97.90  E-value=2e-05  Score=53.94  Aligned_cols=37  Identities=11%  Similarity=-0.177  Sum_probs=33.0

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      +|+++++++++++.|.+.  .|+|+|+++++.+||.|..
T Consensus       241 ~~~G~a~~le~~~~l~~~--~~~~~i~~~~~~~EE~g~~  277 (421)
T 2ek8_A          241 DASGVAVTLELARVMSKL--KTDTELRFITFGAEENGLI  277 (421)
T ss_dssp             THHHHHHHHHHHHHHTTS--CCSSEEEEEEESSSTTTSH
T ss_pred             CcHhHHHHHHHHHHHhcc--CCCceEEEEEECCccccch
Confidence            689999999999999884  6889999999999998653

>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A*

Probab=97.77  E-value=4.9e-05  Score=50.07  Aligned_cols=35  Identities=14%  Similarity=0.050  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHc-----CCCCCceEEEEeeCCCCCC
Q psy3109           3 CVGIQYLETIRRYIAE-----GKKFKRTIHVSFVPGPVTQ   37 (58)
Q Consensus         3 ~~~~~~leAl~~L~~~-----g~~p~r~I~l~f~~DEE~G   37 (58)
                      ++++++||++|.|.+.     +.+|+|+|.++|+..||.|
T Consensus       106 SGvA~lLElAR~l~~~~~~~~~~~p~~tI~fv~fdaEE~G  145 (312)
T 4f9u_A          106 VPCAILLNTAKTLGAYLQKEFRNRSDVGLMLIFFDGEEAF  145 (312)
T ss_dssp             HHHHHHHHHHHHTHHHHTTGGGSCSSEEEEEEEESCCSCS
T ss_pred             ccHHHHHHHHHHHHHHHHhhccCCCCceEEEEEecCcccc
Confidence            6899999999999753     5679999999999999987

>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, structure initiative; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4

Probab=97.66  E-value=8.2e-05  Score=48.99  Aligned_cols=37  Identities=3%  Similarity=-0.058  Sum_probs=32.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++++++++.+.+.+  +..+++++|+.+||+|+.
T Consensus       170 ~k~g~aa~l~al~~l~~~~--~~~~~~~~~t~~EEvG~~  206 (348)
T 1ylo_A          170 DRLSCYLLVTLLRELHDAE--LPAEVWLVASSSEEVGLR  206 (348)
T ss_dssp             HHHHHHHHHHHHHHHTTCC--CSSEEEEEEESCCTTSSH
T ss_pred             cHHHHHHHHHHHHHhhhcC--CCceEEEEEEcccccchh
Confidence            6899999999999998764  668999999999999985

>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; 2.11A {Haemophilus somnus 129PT}

Probab=97.61  E-value=3.8e-05  Score=52.91  Aligned_cols=35  Identities=9%  Similarity=-0.092  Sum_probs=29.3

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++++++++.   .+ .|+++|+++|++|||+|+.
T Consensus       117 ~k~g~a~~l~a~~~---~~-~~~~~v~~~~~~~EE~g~~  151 (487)
T 2qyv_A          117 NGIGMASALAVLES---ND-IAHPELEVLLTMTEERGME  151 (487)
T ss_dssp             HHHHHHHHHHHHHC---SS-SCCSSEEEEEESCTTTTCH
T ss_pred             CHHHHHHHHHHHHh---CC-CCCCCEEEEEEeccccCCH
Confidence            68999999999873   34 3778999999999998764

>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A*

Probab=97.59  E-value=5.5e-05  Score=50.71  Aligned_cols=36  Identities=17%  Similarity=0.064  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHH---cCCCCCceEEEEeeCCCCCCC
Q psy3109           3 CVGIQYLETIRRYIA---EGKKFKRTIHVSFVPGPVTQN   38 (58)
Q Consensus         3 ~~~~~~leAl~~L~~---~g~~p~r~I~l~f~~DEE~Gg   38 (58)
                      ++++++||++|.|.+   .+.+|+|+|.++|+..||.|-
T Consensus       132 sG~A~lLE~Ar~l~~~~~~~~~p~rtI~fv~fdgEE~Gl  170 (330)
T 4fai_A          132 VPCAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDGEEAFE  170 (330)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGGTSSEEEEEEEESCCSCSS
T ss_pred             HhHHHHHHHHHHHHHhhhccCCCCccEEEEEeccccccc
Confidence            588999999999865   467899999999999999874

>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...

Probab=97.54  E-value=0.00026  Score=52.42  Aligned_cols=38  Identities=16%  Similarity=-0.035  Sum_probs=33.4

Q ss_pred             hHHHHHHHHHHHHHHH---cCCCCCceEEEEeeCCCCCCCh
Q psy3109           2 KCVGIQYLETIRRYIA---EGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         2 K~~~~~~leAl~~L~~---~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      .++++++||++|.|.+   .|++|+|+|.++++.+||.|-.
T Consensus       346 ~sG~a~lLe~ar~l~~~~~~g~~p~r~I~f~~~~~EE~Gl~  386 (707)
T 3fed_A          346 TSGVAVLQEIARSFGKLMSKGWRPRRTIIFASWDAEEFGLL  386 (707)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTSH
T ss_pred             cHHHHHHHHHHHHHHhhhhccCCCCCCEEEEEeCCccccch
Confidence            5789999999998876   6889999999999999998653

>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus}

Probab=97.53  E-value=5e-05  Score=52.91  Aligned_cols=35  Identities=9%  Similarity=-0.106  Sum_probs=28.2

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++++++++    ....|.++|.++|++|||+|+.
T Consensus       120 ~k~g~a~~l~~l~----~~~~~~~~v~~~~~~~EE~g~~  154 (490)
T 3mru_A          120 NGIGMASCLAVLA----SKEIKHGPIEVLLTIDEEAGMT  154 (490)
T ss_dssp             HHTTHHHHHHHHH----CSSCCCCSEEEEEESCSSSTTG
T ss_pred             CHHHHHHHHHHHH----hCCCCCCCEEEEEEcccccccH
Confidence            6888998888763    3345778999999999999864

>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4

Probab=97.50  E-value=0.0001  Score=48.66  Aligned_cols=37  Identities=8%  Similarity=-0.102  Sum_probs=32.5

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++++++++.|++.+  +..+++++|+.+||+|+.
T Consensus       173 ~r~g~aa~l~al~~l~~~~--~~~~~~~~~t~~EEvG~~  209 (346)
T 1vho_A          173 NRASCGVLVKVLEFLKRYD--HPWDVYVVFSVQEETGCL  209 (346)
T ss_dssp             HHHHHHHHHHHHHHHTTCC--CSSEEEEEEECTTSSSHH
T ss_pred             cHHHHHHHHHHHHHhhhcC--CCceEEEEEECCcccchh
Confidence            5889999999999998765  557999999999999875

>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A

Probab=97.44  E-value=0.00027  Score=51.77  Aligned_cols=37  Identities=11%  Similarity=-0.042  Sum_probs=33.1

Q ss_pred             hHHHHHHHHHHHHHHHc----CCCCCceEEEEeeCCCCCCC
Q psy3109           2 KCVGIQYLETIRRYIAE----GKKFKRTIHVSFVPGPVTQN   38 (58)
Q Consensus         2 K~~~~~~leAl~~L~~~----g~~p~r~I~l~f~~DEE~Gg   38 (58)
                      .+++++++|++|.|.+.    |++|+|+|.++++.+||.|-
T Consensus       300 ~sG~a~lLe~ar~l~~~~~~~g~~p~r~I~f~~~~~EE~gl  340 (640)
T 3kas_A          300 GVGTALLLKLAQMFSDMVLKDGFQPSRSIIFASWSAGDFGS  340 (640)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCCCCSEEEEEEEESSGGGTS
T ss_pred             cHHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEECCcccCc
Confidence            57899999999999864    88999999999999999765

>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X*

Probab=97.37  E-value=0.00034  Score=47.46  Aligned_cols=36  Identities=17%  Similarity=0.106  Sum_probs=32.0

Q ss_pred             ChHHHHHHHHHHHHHHHc-----CCCCCceEEEEeeCCCCC
Q psy3109           1 MKCVGIQYLETIRRYIAE-----GKKFKRTIHVSFVPGPVT   36 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~-----g~~p~r~I~l~f~~DEE~   36 (58)
                      +.++++++||++|.|.+.     +.+|+++|.++|+.+||.
T Consensus       135 ~asGva~lLe~ar~l~~~~~~~~~~~~~~~i~fv~~~~EE~  175 (330)
T 3pb6_X          135 SAVPCALLLELAQALDLELSRAKKQAAPVTLQLLFLDGEEA  175 (330)
T ss_dssp             THHHHHHHHHHHHHTHHHHHHHHHTTCSEEEEEEEESCCSC
T ss_pred             ChHHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEEcCccc
Confidence            368999999999999874     468999999999999996

>3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif, tetramerisat (alpha,beta,BETA,alpha), endoprotease, hydrolase; 2.70A {Staphylococcus aureus}

Probab=97.36  E-value=0.00015  Score=49.06  Aligned_cols=34  Identities=9%  Similarity=-0.080  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCC
Q psy3109           5 GIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQN   38 (58)
Q Consensus         5 ~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg   38 (58)
                      .++.+.|++.|++.+..++++|.++|++|||+|+
T Consensus        99 ~a~~l~aa~~L~~~~~~~~g~v~~~f~~~EE~~~  132 (394)
T 3ram_A           99 GTASVLGAIGLKQVIDQIGGKVVVLGCPAEEGGE  132 (394)
T ss_dssp             HHHHHHHHHHHHTTHHHHCSEEEEEECCCTTCCT
T ss_pred             HHHHHHHHHHHHHhHhhCCceEEEEEECCccCCC
Confidence            4567888899988777788999999999999874

>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}

Probab=97.27  E-value=0.0005  Score=46.84  Aligned_cols=44  Identities=7%  Similarity=-0.033  Sum_probs=35.2

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANS   48 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s   48 (58)
                      +|.+++.++++++.|++.  .|+.+++++|+.-||+|+.  |...+.+
T Consensus       183 nr~g~~~~l~~l~~l~~~--~~~~~v~~~ft~qEEvG~~--Ga~~a~~  226 (355)
T 3kl9_A          183 NRYGVLMVSELAEALSGQ--KLGNELYLGSNVQEEVGLR--GAHTSTT  226 (355)
T ss_dssp             HHHHHHHHHHHHHHHSSC--CCSSEEEEEEESCCTTTSH--HHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhc--CCCceEEEEEECccccCcc--hhHHHHh
Confidence            378899999999998765  5789999999999999985  4444433

>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron}

Probab=97.20  E-value=0.00063  Score=44.90  Aligned_cols=34  Identities=15%  Similarity=-0.005  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCC
Q psy3109           3 CVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQN   38 (58)
Q Consensus         3 ~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg   38 (58)
                      ++++.+||++|.|.+.  +|+|+|.++|+..||.|-
T Consensus       130 SG~a~lLE~ar~l~~~--~~~~~i~~~~~~~EE~Gl  163 (309)
T 4fuu_A          130 SGVGALLEIARLVNQQ--QPELGIDIIFLDAEDYGT  163 (309)
T ss_dssp             HHHHHHHHHHHHHHHS--CCSSEEEEEEECSSSCCC
T ss_pred             hhHHHHHHHHHHHhhc--CCCCceEEEeecccccCc
Confidence            6899999999999885  689999999999999874

>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structura genomics; 2.39A {Cytophaga hutchinsonii atcc 33406}

Probab=97.05  E-value=0.00024  Score=47.13  Aligned_cols=31  Identities=10%  Similarity=-0.147  Sum_probs=27.1

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||++++++++|++.++     +   ++++|+.|||+|+.
T Consensus       166 ~k~G~aa~l~al~~l~-----~---i~~~~t~~EEvG~~  196 (321)
T 3cpx_A          166 DRLGVWTALELAKTLE-----H---GIIAFTCWEEHGGG  196 (321)
T ss_dssp             HHHHHHHHHHHTTTCC-----S---EEEEEESSTTTTCC
T ss_pred             CHHHHHHHHHHHHHhc-----C---cEEEEECCccCchh
Confidence            6899999999998765     2   99999999999985

>3isx_A Endoglucanase; TM1050, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima}

Probab=95.50  E-value=0.0051  Score=41.88  Aligned_cols=33  Identities=12%  Similarity=-0.039  Sum_probs=27.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           2 KCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         2 K~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      |.+++.++++++.++.     +.+++++|+.-||+|+.
T Consensus       182 R~g~~~~l~~l~~l~~-----~~~~~~~ft~qEEVG~~  214 (343)
T 3isx_A          182 RIGCAVIVEVFKRIKP-----AVTLYGVFSVQEEVGLV  214 (343)
T ss_dssp             HHHHHHHHHHHHHCCC-----SSEEEEEEECCCCTTSC
T ss_pred             HHHHHHHHHHHHhccC-----CCeEEEEEECCcccCch
Confidence            6788888888887642     57999999999999985

>1y7e_A Probable M18-family aminopeptidase 1; aminopeptidase I, borrelia burgdorferi B31, YSCI, structural genomics, PSI; 3.20A {Borrelia burgdorferi} SCOP: b.49.3.1 c.56.5.4

Probab=93.98  E-value=0.0086  Score=42.30  Aligned_cols=35  Identities=17%  Similarity=0.019  Sum_probs=24.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           2 KCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         2 K~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      |.++...++|++.+.+   .|..+++++|+.-||+|+.
T Consensus       257 r~~~~~~l~al~~~~~---~~~~~~~~~~~d~EEVGs~  291 (458)
T 1y7e_A          257 KICVFTSLESIFDLEE---TPNKTAICFLVDKEEIGST  291 (458)
T ss_dssp             HHHHHHHHHHHSSSSC---CCSSCEECCCBCSTTC---
T ss_pred             HHHHHHHHHHHHhhhc---cCCceEEEEEEcccccCcc
Confidence            5566777777665432   4778999999999999986

>2glj_A Probable M18-family aminopeptidase 1; aminopeptidase I, NYSGXRC, structural genomics, PSI, protein structure initiative; 3.20A {Clostridium acetobutylicum}

Probab=93.80  E-value=0.013  Score=41.45  Aligned_cols=34  Identities=12%  Similarity=0.044  Sum_probs=25.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           2 KCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         2 K~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      +.++...++|++.+.    .|..+++++|+.-||+|+.
T Consensus       263 r~~~~~~l~al~~~~----~~~~~~~~~~~d~EEVGs~  296 (461)
T 2glj_A          263 RICAYTSFEAMLEMK----NAKKTCITILVDKEEVGSI  296 (461)
T ss_dssp             HHHHHHHHHHHHTCC----SCSSCEEEEEECCGGGTCC
T ss_pred             HHHHHHHHHHHHhhc----cCCCeEEEEEEccCCCCCc
Confidence            456666666665542    5778999999999999986

>2glf_A Probable M18-family aminopeptidase 1; putative, NYSGXRC, structural genomics, PS protein structure initiative; 2.80A {Thermotoga maritima}

Probab=91.90  E-value=0.11  Score=36.56  Aligned_cols=32  Identities=13%  Similarity=0.119  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           3 CVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         3 ~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      .++...++|++.+     .+..+++++++--||+|+.
T Consensus       252 ~~~~~~l~al~~~-----~~~~~~~~~~~d~EEVGs~  283 (450)
T 2glf_A          252 ICAYTALRALLSA-----NPEKSIGVIFFDKEEIGSD  283 (450)
T ss_dssp             HHHHHHHHHHHHC-----CCSSCEEEEEESCGGGTSC
T ss_pred             HHHHHHHHHHHhc-----CCCceEEEEEEcccccCCc
Confidence            4455556665543     4678999999999999986

>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}

Probab=86.91  E-value=0.49  Score=33.71  Aligned_cols=34  Identities=12%  Similarity=-0.054  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           3 CVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         3 ~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ++++..++..+.|++  ..|+++++++|++ |.+|+.
T Consensus       199 SG~a~lleLar~l~~--~~~~~t~rFvf~p-g~iGS~  232 (435)
T 3k9t_A          199 SGVALITFIAKALSK--LKTKYSYRFLFAP-ETIGSI  232 (435)
T ss_dssp             HHHHHHHHHHHHHTT--SCCSSEEEEEEEC-TTHHHH
T ss_pred             hHHHHHHHHHHHHhc--CCCCceEEEEEcC-ccHHHH
Confidence            578888888898876  3588999999997 554443

>2ijz_A Probable M18-family aminopeptidase 2; putative aminopeptidase 2, structura genomics, PSI, protein structure initiative; 3.00A {Pseudomonas aeruginosa}

Probab=85.58  E-value=0.11  Score=36.36  Aligned_cols=33  Identities=12%  Similarity=-0.175  Sum_probs=23.2

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           2 KCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         2 K~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      |.++...++|++.+.    .+..+++++| .-||+|+.
T Consensus       237 r~~~~~~l~al~~~~----~~~~~v~~~f-d~EEVGs~  269 (428)
T 2ijz_A          237 LLSCHAGLEALLNAE----GDENCILVCT-DHEEVGSC  269 (428)
T ss_dssp             SSTTTTTTTHHHHTT----SCSSSCEEEE-CBSCTTTT
T ss_pred             HHHHHHHHHHHHhcc----cCCceEEEEE-eccccCcc
Confidence            455666777777664    3556787777 67999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	58
g1q7l.1	280	Aminoacylase-1, catalytic domain {Human (Homo sapi	98.93
d1cg2a1	276	Carboxypeptidase G2, catalytic domain {Pseudomonas	98.92
d1lfwa1	272	Aminopeptidase PepV {Lactobacillus delbrueckii [Ta	98.87
d1vgya1	262	Succinyl-diaminopimelate desuccinylase, catalytic	98.75
d1z2la1	293	Allantoate amidohydrolase AllC catalytic domain {E	98.66
d1r3na1	322	Peptidase-like beta-alanine synthase, catalytic do	98.54
d1tkja1	277	Aminopeptidase {Streptomyces griseus [TaxId: 1911]	98.54
d2grea2	233	Deblocking aminopeptidase YhfE {Bacillus cereus [T	98.48
d1rtqa_	291	Aminopeptidase {Aeromonas proteolytica [TaxId: 671	98.36
d1de4c3	294	Transferrin receptor ectodomain, protease-like dom	97.94
d3bi1a3	304	Glutamate carboxypeptidase II FOLH1 {Human (Homo s	97.84
d2afwa1	329	Glutaminyl-peptide cyclotransferase, QPCT {Human (	97.78
d1fnoa4	295	Peptidase T (tripeptidase), catalytic domain {Salm	97.75
d1vhea2	275	Hypothetical protein YsdC, catalytic domain {Bacil	97.74
d1vhoa2	248	Putative endoglucanase TM1048, catalytic domain {T	97.72
d1yloa2	264	Aminopeptidase YpdE {Shigella flexneri [TaxId: 623	97.53
d2fvga2	255	Endoglucanase TM1049 {Thermotoga maritima [TaxId:	97.46
d1y0ya2	255	Frv operon protein FrvX, catalytic domain {Pyrococ	96.92
d1xmba1	273	IAA-amino acid hydrolase, catalytic domain {Mouse-	95.9
d1ysja1	261	Protein YxeP {Bacillus subtilis [TaxId: 1423]}	95.83
d1y7ea2	322	Probable aminopeptidase ApeA {Borrelia burgdorferi	91.91

>d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Carboxypeptidase G2, catalytic domain
species: Pseudomonas sp., strain rs-16 [TaxId: 306]

Probab=98.92  E-value=1.3e-09  Score=70.13  Aligned_cols=47  Identities=17%  Similarity=-0.007  Sum_probs=41.7

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANS   48 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s   48 (58)
                      ||+++++.++|++.|++.+..|+++|.++|++|||+|+. +...++..
T Consensus       117 ~k~g~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~-g~~~~~~~  163 (276)
T d1cg2a1         117 DKGGNAVILHTLKLLKEYGVRDYGTITVLFNTDEEKGSF-GSRDLIQE  163 (276)
T ss_dssp             THHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCGGGTTT-TTHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHcCCCCCCCEEEEEEcccccccc-cHHHHHHh
Confidence            899999999999999999999999999999999999986 55555443

>d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Aminopeptidase PepV
species: Lactobacillus delbrueckii [TaxId: 1584]

Probab=98.87  E-value=2.7e-09  Score=68.53  Aligned_cols=39  Identities=15%  Similarity=-0.029  Sum_probs=37.9

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ||+++++.++|++.|++.+..|+++|.++|++|||+|+.
T Consensus       120 ~k~~~~~~~~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~  158 (272)
T d1lfwa1         120 DKGPSLTAYYGMLLLKEAGFKPKKKIDFVLGTNEETNWV  158 (272)
T ss_dssp             SHHHHHHHHHHHHHHHHHTCCCSSEEEEEEESCTTTTCH
T ss_pred             ccccHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccCCc
Confidence            899999999999999999999999999999999999986

>d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate desuccinylase, catalytic domain {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Succinyl-diaminopimelate desuccinylase, catalytic domain
species: Neisseria meningitidis [TaxId: 487]

Probab=98.75  E-value=1.7e-08  Score=63.67  Aligned_cols=51  Identities=16%  Similarity=0.170  Sum_probs=44.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHHHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANSVLYL   52 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s~~~~   52 (58)
                      ||+++++.++|++++++.+..+++++.++|++|||.++. .|..++......
T Consensus       101 ~Kg~~a~~l~a~~~l~~~~~~~~~~~~l~~~~dEE~~~~-~G~~~l~~~~~~  151 (262)
T d1vgya1         101 MKTSIACFVTACERFVAKHPNHQGSIALLITSDEEGDAL-DGTTKVVDVLKA  151 (262)
T ss_dssp             THHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCT-TSHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhcccCCCCeEEEEEecCccccc-cCHHHHHhHhhh
Confidence            899999999999999999999999999999999998886 677776665444

>d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Allantoate amidohydrolase AllC catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=8.1e-09  Score=68.38  Aligned_cols=49  Identities=10%  Similarity=-0.084  Sum_probs=44.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHHHHHH
Q psy3109           2 KCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANSVLYL   52 (58)
Q Consensus         2 K~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s~~~~   52 (58)
                      ..++++.+++++.|++++.+|+|+|.++.|.|||  |.+||.++++|+.+.
T Consensus        93 ~~Gv~a~le~~~~l~~~~~~~~~~i~vv~f~~EE--g~rFg~~~~GS~~~~  141 (293)
T d1z2la1          93 QFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEE--GSRFPYVFWGSKNIF  141 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSCSEEEEEEEESCSS--CCSSSCSCHHHHHHT
T ss_pred             chhHHHHHHHHHHHHhcCCCCCCCceeeeeeccc--ccccCcccccchhhc
Confidence            4688999999999999999999999999999999  456999999999875

>d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine synthase, catalytic domain {Yeast (Saccharomyces kluyveri) [TaxId: 4934]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Peptidase-like beta-alanine synthase, catalytic domain
species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]

Probab=98.54  E-value=4.5e-08  Score=65.66  Aligned_cols=49  Identities=10%  Similarity=0.003  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHHHHHHh
Q psy3109           3 CVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANSVLYLL   53 (58)
Q Consensus         3 ~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s~~~~~   53 (58)
                      .++++.|++++.|++.+.+|+++|.+++|.|||  +.+||.++++|+++.-
T Consensus       111 lGV~a~Levl~~l~e~~~~~~~~i~vv~f~~EE--g~rFg~~~lGS~~~~G  159 (322)
T d1r3na1         111 LGVLAGLEVLRTFKDNNYVPNYDVCVVVWFNEE--GARFARSCTGSSVWSH  159 (322)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSSCEEEEECSCSS--CSSBSSTTHHHHHHTT
T ss_pred             cchHHHHHHHHHHhhhccCCCCCcEEEEeeccc--cccccccccccccccC
Confidence            578999999999999999999999999999999  5579999999998763

>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Aminopeptidase
species: Streptomyces griseus [TaxId: 1911]

Probab=98.54  E-value=8.4e-08  Score=61.78  Aligned_cols=39  Identities=10%  Similarity=-0.049  Sum_probs=36.5

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ++++++++||++|.|++.+++|+|+|.++|+.+||.|..
T Consensus        98 ~~sgva~~le~ar~l~~~~~~~~~~i~~~~~~~EE~g~~  136 (277)
T d1tkja1          98 NGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGLI  136 (277)
T ss_dssp             THHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTSH
T ss_pred             CccchHHHHHHHHHHHhhcCCCCcceEEeeccccccccc
Confidence            689999999999999999999999999999999998764

>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Deblocking aminopeptidase YhfE
species: Bacillus cereus [TaxId: 1396]

Probab=98.48  E-value=8.7e-08  Score=60.73  Aligned_cols=39  Identities=18%  Similarity=0.066  Sum_probs=33.2

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      +|++++.++++++.|++.+.+|+++|+++|+++||+|..
T Consensus        72 dk~g~a~~l~~~~~l~~~~~~~~~~i~~~ft~~EE~G~~  110 (233)
T d2grea2          72 DKVSVAILLKLIKRLQDENVTLPYTTHFLISNNEEIGYG  110 (233)
T ss_dssp             THHHHHHHHHHHHHHHHHTCCCSEEEEEEEESCC----C
T ss_pred             ccCcHHHHHHHHHHHHHCCCCCCceEEEEEEeCcccCch
Confidence            489999999999999999999999999999999999863

>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Aminopeptidase
species: Aeromonas proteolytica [TaxId: 671]

Probab=98.36  E-value=5.1e-07  Score=58.53  Aligned_cols=39  Identities=15%  Similarity=-0.062  Sum_probs=36.0

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      +++++++.||++|.|++.+++|+|+|+++|+.+||.|-.
T Consensus       118 ~~sGva~~le~ar~l~~~~~~~~~~i~f~~~~~EE~Gl~  156 (291)
T d1rtqa_         118 DASGIAAVTEVIRVLSENNFQPKRSIAFMAYAAEEVGLR  156 (291)
T ss_dssp             THHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTSH
T ss_pred             chhhHHHHHHHHHHHHHhhcCCcCceEEeccccchhhcc
Confidence            368999999999999999999999999999999998764

>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: FolH catalytic domain-like
domain: Transferrin receptor ectodomain, protease-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.3e-05  Score=51.70  Aligned_cols=37  Identities=11%  Similarity=-0.007  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHH----cCCCCCceEEEEeeCCCCCCCh
Q psy3109           3 CVGIQYLETIRRYIA----EGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         3 ~~~~~~leAl~~L~~----~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      ++++++||.+|.|.+    .|++|+|||.++++..||.|-.
T Consensus       107 sG~a~llelar~l~~~~~~~g~~P~rtI~f~~~~~EE~Gl~  147 (294)
T d1de4c3         107 VGTALLLKLAQMFSDMVLKDGFQPSRSIIFASWSAGDFGSV  147 (294)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCCSEEEEEEEECCCTTTSH
T ss_pred             hhHHHHHHHHHHHHhhhhhcCCCCCceEEEEEecCcccccc
Confidence            688999999999854    5899999999999999998753

>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: FolH catalytic domain-like
domain: Glutamate carboxypeptidase II FOLH1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=2.8e-05  Score=50.15  Aligned_cols=44  Identities=18%  Similarity=0.036  Sum_probs=34.4

Q ss_pred             hHHHHHHHHHHHHH---HHcCCCCCceEEEEeeCCCCCCChhhhHHHH
Q psy3109           2 KCVGIQYLETIRRY---IAEGKKFKRTIHVSFVPGPVTQNETCGLAAA   46 (58)
Q Consensus         2 K~~~~~~leAl~~L---~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~   46 (58)
                      -++++.+||++|.|   ++.|++|+|||.++++..||.|-. +...++
T Consensus       100 ~sG~a~lle~ar~l~~~~~~~~~p~~ti~f~~~~~EE~gl~-Gs~~~~  146 (304)
T d3bi1a3         100 QSGAAVVHEIVRSFGTLKKEGWRPRRTILFASWDAEEFGLL-GSTEWA  146 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESSGGGTSH-HHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCcccccc-chHHHH
Confidence            46788999988865   467899999999999999998754 333443

>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Glutaminyl-peptide cyclotransferase-like
domain: Glutaminyl-peptide cyclotransferase, QPCT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=1.1e-05  Score=51.99  Aligned_cols=36  Identities=17%  Similarity=0.093  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHc--------CCCCCceEEEEeeCCCCCCC
Q psy3109           3 CVGIQYLETIRRYIAE--------GKKFKRTIHVSFVPGPVTQN   38 (58)
Q Consensus         3 ~~~~~~leAl~~L~~~--------g~~p~r~I~l~f~~DEE~Gg   38 (58)
                      ++++.+||.+|.|.+.        +.+|+|+|.++|+..||.|.
T Consensus       130 SGvA~lLElAR~l~~~~~~~~~~~~~~p~~tI~fv~f~gEE~G~  173 (329)
T d2afwa1         130 VPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFL  173 (329)
T ss_dssp             HHHHHHHHHHHHTHHHHHTTC------CCEEEEEEEESCCSCSS
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhcccCCCCceEEEEEeccccccc
Confidence            6889999999999763        67899999999999999984

>d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Peptidase T (tripeptidase), catalytic domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.75  E-value=1.2e-05  Score=49.66  Aligned_cols=37  Identities=14%  Similarity=0.096  Sum_probs=33.0

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCC
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQN   38 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg   38 (58)
                      +|++++++++|++.+.+.+. |.++|+++|++|||+|.
T Consensus       141 ~k~G~aa~l~a~~~l~~~~~-~~~~v~~~~t~~EE~~~  177 (295)
T d1fnoa4         141 DKAGVAEIMTALAVLKGNPI-PHGDIKVAFTPDEEVGK  177 (295)
T ss_dssp             HHHHHHHHHHHHHHHHSSSC-CCCCEEEEEESCGGGTC
T ss_pred             chhhHHHHHHHHHHHHhcCC-CCCceecccccceecCc
Confidence            58999999999999999874 77899999999999764

>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Hypothetical protein YsdC, catalytic domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.74  E-value=3.8e-05  Score=47.59  Aligned_cols=42  Identities=7%  Similarity=-0.074  Sum_probs=34.9

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHH
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAA   46 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~   46 (58)
                      +|+++++++++++.|++.  ++.++|.++|+.+||+|+.  |...+
T Consensus        91 d~~Gva~~l~~~~~l~~~--~~~~~v~~~~~~~EE~G~~--Ga~~~  132 (275)
T d1vhea2          91 NRIGCAIAIDVLRNLQNT--DHPNIVYGVGTVQEEVGLR--GAKTA  132 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTS--CCSSEEEEEEESCCTTTSH--HHHHH
T ss_pred             CccCHHHHHHHHHHHhcC--CCCceEEEEEecccccCCc--chhhh
Confidence            588999999999999875  4678999999999999885  44433

>d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048, catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Putative endoglucanase TM1048, catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.72  E-value=1.7e-05  Score=48.91  Aligned_cols=37  Identities=8%  Similarity=-0.098  Sum_probs=32.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      +|++++.++++++.|.+.  +|+++|.++|+.+||+|..
T Consensus        86 d~~G~a~~l~~~~~l~~~--~~~~~v~~~~~~~EE~G~~  122 (248)
T d1vhoa2          86 NRASCGVLVKVLEFLKRY--DHPWDVYVVFSVQEETGCL  122 (248)
T ss_dssp             HHHHHHHHHHHHHHHTTC--CCSSEEEEEEECTTSSSHH
T ss_pred             ccHhHHHHHHHHHHHhhc--CCCCceEEEEeecccCCCC
Confidence            489999999999999875  4778999999999999874

>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Aminopeptidase YpdE
species: Shigella flexneri [TaxId: 623]

Probab=97.53  E-value=9.3e-05  Score=45.79  Aligned_cols=37  Identities=3%  Similarity=-0.041  Sum_probs=32.3

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      +|++++.+++++|.|.+.  +|+++|.++|+..||.|..
T Consensus        86 ~~~gva~lle~~r~l~~~--~~~~~v~~~~~~~EE~G~~  122 (264)
T d1yloa2          86 DRLSCYLLVTLLRELHDA--ELPAEVWLVASSSEEVGLR  122 (264)
T ss_dssp             HHHHHHHHHHHHHHHTTC--CCSSEEEEEEESCCTTSSH
T ss_pred             ccccHHHHHHHHHHHhcC--CCCceEEEEEEeccccCCC
Confidence            478999999999998764  5778999999999999875

>d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Endoglucanase TM1049
species: Thermotoga maritima [TaxId: 2336]

Probab=97.46  E-value=3.1e-05  Score=47.01  Aligned_cols=35  Identities=6%  Similarity=-0.090  Sum_probs=25.5

Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           1 MKCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         1 MK~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      +|++++.++++++.+.    .|+.+|+++|+.+||+|+.
T Consensus        83 d~~Gva~~l~~~~~~~----~~~~~i~~~~t~~EE~G~~  117 (255)
T d2fvga2          83 DRAGCSVLIDVLESGV----SPAYDTYFVFTVQEETGLR  117 (255)
T ss_dssp             HHHHHHHHHHHHHTCC----CCSEEEEEEEECCCC----
T ss_pred             chHhHHHHHHHHHHhc----ccccceEEEEEeecccCCc
Confidence            4788888888777443    4778999999999999875

>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Frv operon protein FrvX, catalytic domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.92  E-value=0.00054  Score=43.33  Aligned_cols=34  Identities=9%  Similarity=-0.048  Sum_probs=29.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           2 KCVGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         2 K~~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      |.+++.++++++.+++    ++.+++++|+.-||+|+.
T Consensus        21 r~g~~~lle~l~~lk~----~~~~l~~vft~qEEvG~r   54 (255)
T d1y0ya2          21 RIAVYTILEVAKQLKD----AKADVYFVATVQEEVGLR   54 (255)
T ss_dssp             HHHHHHHHHHHHHCCS----CSSEEEEEEESCCTTTSH
T ss_pred             HHHHHHHHHHHHHhhc----cCCcEEEEEEcccccCCC
Confidence            6788999999988753    567899999999999985

>d1xmba1 c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydrolase, catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: IAA-amino acid hydrolase, catalytic domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.90  E-value=0.0049  Score=39.18  Aligned_cols=42  Identities=10%  Similarity=0.049  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHH
Q psy3109           4 VGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAAN   47 (58)
Q Consensus         4 ~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~   47 (58)
                      -.++.+.|.+.|.+.....+.+|+++|.|+||+++  ++..++.
T Consensus       106 h~a~~l~aa~~l~~~~~~~~g~v~~ifqPaEE~~~--Ga~~mi~  147 (273)
T d1xmba1         106 HVTMLLGAAKILHEHRHHLQGTVVLIFQPAEEGLS--GAKKMRE  147 (273)
T ss_dssp             HHHHHHHHHHHHHHTGGGCSSEEEEEEECCTTTTC--HHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCCeEEEEEeccccccc--chhHHHH
Confidence            35677788888888765567899999999999765  4444443

>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Protein YxeP
species: Bacillus subtilis [TaxId: 1423]

Probab=95.83  E-value=0.0086  Score=38.06  Aligned_cols=43  Identities=12%  Similarity=0.066  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCChhhhHHHHHH
Q psy3109           4 VGIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNETCGLAAANS   48 (58)
Q Consensus         4 ~~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~~~g~~~~~s   48 (58)
                      ..++.+.|...|.+.....+.+|+++|.|.||.++  ++..++.+
T Consensus       100 h~a~~lgaA~~l~~~~~~~~G~v~lifqPaEE~~~--Ga~~mi~~  142 (261)
T d1ysja1         100 HTASIIGTAMLLNQRRAELKGTVRFIFQPAEEIAA--GARKVLEA  142 (261)
T ss_dssp             HHHHHHHHHHHHHTCGGGCSSEEEEEEESCTTTTC--HHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcccCCCeEEEecccCccccc--chHHHHHc
Confidence            34566777787877655677899999999999764  45554443

>d1y7ea2 c.56.5.4 (A:4-100,A:234-458) Probable aminopeptidase ApeA {Borrelia burgdorferi [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Probable aminopeptidase ApeA
species: Borrelia burgdorferi [TaxId: 139]

Probab=91.91  E-value=0.041  Score=35.90  Aligned_cols=35  Identities=9%  Similarity=0.005  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHcCCCCCceEEEEeeCCCCCCCh
Q psy3109           5 GIQYLETIRRYIAEGKKFKRTIHVSFVPGPVTQNE   39 (58)
Q Consensus         5 ~~~~leAl~~L~~~g~~p~r~I~l~f~~DEE~Gg~   39 (58)
                      .+..+.++++|++..-.|..+..++|+--||+||.
T Consensus       121 ~~~~~~~l~Ali~~~~~~~~~~v~~~~D~EEIGS~  155 (322)
T d1y7ea2         121 KICVFTSLESIFDLEETPNKTAICFLVDKEEIGST  155 (322)
T ss_dssp             HHHHHHHHHHHSSSSCCCSSCEECCCBCSTTC---
T ss_pred             HHHHHHHHHHHHhhhcCCCceEEEEEecccccCCC
Confidence            35667778888876556777767777777999986