Psyllid ID: psy3135

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
MTKQVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVELDEEIKHLNS
ccccEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccEEcccccccccccHHHHHHccccccEEEccccccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHccccccccccccEEEEcccccEEEEcccccccccccccccccccccccccccccccccccccccccHHHcccccHHHHHHHHHHHHHHHHcccccccccHHHHHcccc
ccccEEEEHcccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccEEEcccccccHHccccHHHcccccccEEEEccccEEEEcccccEEEEEEEEHHHccccHHHHHHHHHHHHHccccccccccccEEEEccHHHEHEEEEEEEccEEEcEEEEEcccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccEEcccccHHHHHcc
MTKQVQLVRLGLVSYSNGIKIQEHYVNKLKTLiskpsnhsgtllllehkpvytIGIRSLKEYDENLELKLNKLGADfyktnrgglitfhgpgqlvaypiinlkhftpSIKWFVQSIEQTQEFSlnaglipkytgvflddeykVCAIGVHSSlyithhglaincdtdltwfnhitpcgikdkqVTSLSKHlskditvdtVVPLFKKHFESVFECECSEVELDEEIKHLNS
MTKQVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLskditvdtVVPLFKKHFESVFececseveldeeikhlns
MTKQVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHfesvfececseveldeeIKHLNS
****VQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVE**********
*TKQVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVEL*********
MTKQVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVELDEEIKHLNS
**KQVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVELDEEIKHLNS
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTKQVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVELDEEIKHLNS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query229 2.2.26 [Sep-21-2011]
Q9VN27234 Putative lipoyltransferas yes N/A 0.917 0.897 0.454 4e-52
Q29R99224 Putative lipoyltransferas yes N/A 0.886 0.906 0.481 5e-49
Q0VFH3239 Putative lipoyltransferas yes N/A 0.899 0.861 0.451 1e-47
A6NK58231 Putative lipoyltransferas yes N/A 0.899 0.891 0.431 2e-41
Q8R9E0228 Octanoyltransferase OS=Th yes N/A 0.912 0.916 0.404 2e-39
Q9D009231 Putative lipoyltransferas yes N/A 0.895 0.887 0.425 1e-38
B0K3J8228 Octanoyltransferase OS=Th yes N/A 0.921 0.925 0.405 1e-38
B0K8D0228 Octanoyltransferase OS=Th yes N/A 0.921 0.925 0.400 3e-38
Q2RZI1256 Octanoyltransferase OS=Sa yes N/A 0.943 0.843 0.372 3e-36
Q02AK4220 Octanoyltransferase OS=So yes N/A 0.855 0.890 0.391 6e-35
>sp|Q9VN27|LIPT2_DROME Putative lipoyltransferase 2, mitochondrial OS=Drosophila melanogaster GN=CG9804 PE=2 SV=1 Back     alignment and function desciption
 Score =  204 bits (520), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 99/218 (45%), Positives = 142/218 (65%), Gaps = 8/218 (3%)

Query: 5   VQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDE 64
           V +VR G  SYS G+++Q+  + +   +++ P+     L+L EH PVYT+G+R+ K+Y  
Sbjct: 8   VTVVRAGRHSYSAGLQLQQR-LARSNQILNPPAEFRNYLVLQEHDPVYTVGLRT-KDYTA 65

Query: 65  NLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT----- 119
             E +L +LGADF++T+RGGLITFHGPGQLVAYPI++L  F PSI+W+V ++E+      
Sbjct: 66  QDEDRLRRLGADFHRTDRGGLITFHGPGQLVAYPILHLGQFVPSIRWYVATLERMVVEAC 125

Query: 120 QEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCGIK 179
            +  +++    K TG+++ D  K+CAIG+H S Y+T HG+ +NC TDL WF HI PCGI+
Sbjct: 126 HQMGISSAKATKDTGIWVGDN-KICAIGIHGSRYVTTHGIGLNCCTDLQWFEHIVPCGIE 184

Query: 180 DKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSE 217
            K VTSLSK L +   V+         F  VFEC   E
Sbjct: 185 GKGVTSLSKELDRHFPVEEASGALLNSFAKVFECRLQE 222
Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 1EC: 8EC: 1
>sp|Q29R99|LIPT2_DANRE Putative lipoyltransferase 2, mitochondrial OS=Danio rerio GN=lipt2 PE=2 SV=1 Back     alignment and function description
>sp|Q0VFH3|LIPT2_XENTR Putative lipoyltransferase 2, mitochondrial OS=Xenopus tropicalis GN=lipt2 PE=2 SV=1 Back     alignment and function description
>sp|A6NK58|LIPT2_HUMAN Putative lipoyltransferase 2, mitochondrial OS=Homo sapiens GN=LIPT2 PE=3 SV=1 Back     alignment and function description
>sp|Q8R9E0|LIPB_THETN Octanoyltransferase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|Q9D009|LIPT2_MOUSE Putative lipoyltransferase 2, mitochondrial OS=Mus musculus GN=Lipt2 PE=2 SV=2 Back     alignment and function description
>sp|B0K3J8|LIPB_THEPX Octanoyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|B0K8D0|LIPB_THEP3 Octanoyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|Q2RZI1|LIPB_SALRD Octanoyltransferase OS=Salinibacter ruber (strain DSM 13855 / M31) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|Q02AK4|LIPB_SOLUE Octanoyltransferase OS=Solibacter usitatus (strain Ellin6076) GN=lipB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query229
383855378238 PREDICTED: putative lipoyltransferase 2, 0.973 0.936 0.489 4e-57
307202740232 Putative octanoyltransferase, mitochondr 0.934 0.922 0.52 6e-57
307186806235 Putative octanoyltransferase, mitochondr 0.908 0.885 0.525 1e-55
242247165233 lipoate-protein ligase b-like [Acyrthosi 0.938 0.922 0.497 3e-55
334852207250 putative lipoyltransferase 2, mitochondr 0.934 0.856 0.469 3e-55
195113409228 GI22071 [Drosophila mojavensis] gi|19391 0.934 0.938 0.488 5e-55
312378234244 hypothetical protein AND_10263 [Anophele 0.947 0.889 0.455 1e-54
91076596240 PREDICTED: similar to lipoate-protein li 0.903 0.862 0.509 3e-54
332024230233 Putative octanoyltransferase, mitochondr 0.925 0.909 0.502 3e-54
242016941229 Lipoate-protein ligase, putative [Pedicu 0.930 0.930 0.471 4e-54
>gi|383855378|ref|XP_003703190.1| PREDICTED: putative lipoyltransferase 2, mitochondrial-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 114/233 (48%), Positives = 166/233 (71%), Gaps = 10/233 (4%)

Query: 2   TKQVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKE 61
           +K V+++  G +SY+ G+K+Q+   ++    +++ +    TL+LLEH PV+T+GIR  K 
Sbjct: 3   SKLVKVLWAGRLSYNTGLKLQKVLSSQHHQNLTQDT--CNTLILLEHDPVFTVGIRD-KG 59

Query: 62  YDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT-- 119
           Y    E +L KLGA+FY+TNRGGLITFHGPGQLVAYPI+NLKHF  S+KW+V  IE+   
Sbjct: 60  YTIEEEERLKKLGAEFYRTNRGGLITFHGPGQLVAYPILNLKHFKCSVKWYVSQIEEMII 119

Query: 120 ---QEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPC 176
               E+ + AG  P  TGV+++D  K+CAIG+H S YIT HGLA+NC+T+L+WF+HI PC
Sbjct: 120 RLCAEYGIKAGTSPD-TGVWVNDR-KICAIGIHGSRYITTHGLALNCNTNLSWFDHIVPC 177

Query: 177 GIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVELDEEIKHLNS 229
           GI+ K VTS+SK L+K++TV  V+PLF+  F++ F+C   +   ++ +K L +
Sbjct: 178 GIEGKGVTSISKELNKNVTVQDVIPLFQNVFQTQFDCRLIQYSTEDSLKLLKT 230

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307202740|gb|EFN82031.1| Putative octanoyltransferase, mitochondrial [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307186806|gb|EFN72229.1| Putative octanoyltransferase, mitochondrial [Camponotus floridanus] Back     alignment and taxonomy information
>gi|242247165|ref|NP_001156299.1| lipoate-protein ligase b-like [Acyrthosiphon pisum] gi|239790512|dbj|BAH71813.1| ACYPI009338 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|334852207|ref|NP_001229368.1| putative lipoyltransferase 2, mitochondrial [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|195113409|ref|XP_002001260.1| GI22071 [Drosophila mojavensis] gi|193917854|gb|EDW16721.1| GI22071 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|312378234|gb|EFR24866.1| hypothetical protein AND_10263 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|91076596|ref|XP_968499.1| PREDICTED: similar to lipoate-protein ligase [Tribolium castaneum] Back     alignment and taxonomy information
>gi|332024230|gb|EGI64434.1| Putative octanoyltransferase, mitochondrial [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|242016941|ref|XP_002428953.1| Lipoate-protein ligase, putative [Pediculus humanus corporis] gi|212513782|gb|EEB16215.1| Lipoate-protein ligase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query229
ZFIN|ZDB-GENE-060312-18224 zgc:136925 "zgc:136925" [Danio 0.851 0.870 0.492 9.8e-48
FB|FBgn0037251234 CG9804 [Drosophila melanogaste 0.829 0.811 0.469 1.1e-46
UNIPROTKB|A6NK58231 LIPT2 "Putative lipoyltransfer 0.855 0.848 0.442 4.3e-38
UNIPROTKB|F1SUQ1225 LOC100739011 "Putative lipoylt 0.842 0.857 0.429 1e-36
UNIPROTKB|I3LDL3225 LOC100739011 "Putative lipoylt 0.842 0.857 0.429 1e-36
MGI|MGI:1914414231 Lipt2 "lipoyl(octanoyl) transf 0.851 0.844 0.440 3.1e-35
RGD|1305211231 Lipt2 "lipoyl(octanoyl) transf 0.851 0.844 0.436 3.1e-35
UNIPROTKB|E2RA82231 LIPT2 "Putative lipoyltransfer 0.855 0.848 0.423 2.8e-34
UNIPROTKB|E1BI46226 LIPT2 "Putative lipoyltransfer 0.842 0.853 0.410 3.6e-34
TAIR|locus:2126609278 AT4G31050 [Arabidopsis thalian 0.772 0.636 0.409 2.5e-33
ZFIN|ZDB-GENE-060312-18 zgc:136925 "zgc:136925" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 102/207 (49%), Positives = 138/207 (66%)

Query:     1 MTKQ-VQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSL 59
             +TK  V+ V LG +SY + +KIQ+ ++ +    +   SN   TLLL EH+PVYTIG+R  
Sbjct:     3 VTKAAVKAVHLGRISYHSALKIQQQHIQQH---LDSSSNIPNTLLLCEHEPVYTIGLRQA 59

Query:    60 KEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT 119
               Y    E +L  LGADF +TNRGGLITFHGPGQLV YPI+NL  F  S++W+V  +E+T
Sbjct:    60 P-YPPAEEQRLKALGADFCRTNRGGLITFHGPGQLVCYPILNLGCFKKSVRWYVCELERT 118

Query:   120 Q-----EFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHIT 174
                   +F + A   P  TGV++ D  K+CAIG+H   YIT HGLA+NC+TD++WF++I 
Sbjct:   119 VIKMCGKFGIKASTSPD-TGVWVGDN-KICAIGIHCGRYITSHGLALNCNTDMSWFDNIV 176

Query:   175 PCGIKDKQVTSLSKHLSKDITVDTVVP 201
             PCGI  K VTSLS+ L +D+  D  +P
Sbjct:   177 PCGIVGKGVTSLSQELERDVPPDEAIP 203
GO:0016415 "octanoyltransferase activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0009107 "lipoate biosynthetic process" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0006464 "cellular protein modification process" evidence=IEA
GO:0005739 "mitochondrion" evidence=IEA
GO:0033819 "lipoyl(octanoyl) transferase activity" evidence=IEA
GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA
GO:0016874 "ligase activity" evidence=IEA
GO:0016740 "transferase activity" evidence=IEA
FB|FBgn0037251 CG9804 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|A6NK58 LIPT2 "Putative lipoyltransferase 2, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SUQ1 LOC100739011 "Putative lipoyltransferase 2, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LDL3 LOC100739011 "Putative lipoyltransferase 2, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1914414 Lipt2 "lipoyl(octanoyl) transferase 2 (putative)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1305211 Lipt2 "lipoyl(octanoyl) transferase 2 (putative)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RA82 LIPT2 "Putative lipoyltransferase 2, mitochondrial" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BI46 LIPT2 "Putative lipoyltransferase 2, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
TAIR|locus:2126609 AT4G31050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q1B6R2LIPB_MYCSS2, ., 3, ., 1, ., 1, 8, 10.38940.80340.7731yesN/A
Q1IIJ5LIPB_KORVE2, ., 3, ., 1, ., 1, 8, 10.36400.88640.8087yesN/A
B2IVM2LIPB_NOSP72, ., 3, ., 1, ., 1, 8, 10.35840.86460.8608yesN/A
A4XA20LIPB_SALTO2, ., 3, ., 1, ., 1, 8, 10.34840.86460.9295yesN/A
A1TB25LIPB_MYCVP2, ., 3, ., 1, ., 1, 8, 10.35430.79470.7647yesN/A
A6GYW1LIPB_FLAPJ2, ., 3, ., 1, ., 1, 8, 10.36050.91260.9008yesN/A
A5FIL6LIPB_FLAJ12, ., 3, ., 1, ., 1, 8, 10.38460.91700.9051yesN/A
A5U4P5LIPB_MYCTA2, ., 3, ., 1, ., 1, 8, 10.390.78160.7782yesN/A
A0QEY7LIPB_MYCA12, ., 3, ., 1, ., 1, 8, 10.37370.79470.7811yesN/A
C1AQD2LIPB_MYCBT2, ., 3, ., 1, ., 1, 8, 10.390.78160.7782yesN/A
Q9D009LIPT2_MOUSE2, ., 3, ., 1, ., 1, 8, 10.42530.89510.8874yesN/A
Q02AK4LIPB_SOLUE2, ., 3, ., 1, ., 1, 8, 10.39170.85580.8909yesN/A
Q1AT14LIPB_RUBXD2, ., 3, ., 1, ., 1, 8, 10.41410.78160.8099yesN/A
Q7ND22LIPB_GLOVI2, ., 3, ., 1, ., 1, 8, 10.32270.88640.9144yesN/A
A6NK58LIPT2_HUMAN2, ., 3, ., 1, ., 1, 8, 10.43180.89950.8917yesN/A
Q47R87LIPB_THEFY2, ., 3, ., 1, ., 1, 8, 10.35540.82090.7966yesN/A
B0K3J8LIPB_THEPX2, ., 3, ., 1, ., 1, 8, 10.40520.92130.9254yesN/A
A1UIB3LIPB_MYCSK2, ., 3, ., 1, ., 1, 8, 10.38940.80340.7731yesN/A
A0LTE0LIPB_ACIC12, ., 3, ., 1, ., 1, 8, 10.41760.66810.6923yesN/A
Q10ZL5LIPB_TRIEI2, ., 3, ., 1, ., 1, 8, 10.36860.88200.9140yesN/A
Q0VFH3LIPT2_XENTR2, ., 3, ., 1, ., 1, 8, 10.45110.89950.8619yesN/A
Q7VEN4LIPB_MYCBO2, ., 3, ., 1, ., 1, 8, 10.390.78160.7782yesN/A
Q2JTV2LIPB_SYNJA2, ., 3, ., 1, ., 1, 8, 10.32660.95630.8423yesN/A
Q2RZI1LIPB_SALRD2, ., 3, ., 1, ., 1, 8, 10.37280.94320.8437yesN/A
A0M5H7LIPB_GRAFK2, ., 3, ., 1, ., 1, 8, 10.38720.91260.8931yesN/A
Q64UP8LIPB_BACFR2, ., 3, ., 1, ., 1, 8, 10.40900.81650.8461yesN/A
A1KKQ9LIPB_MYCBP2, ., 3, ., 1, ., 1, 8, 10.390.78160.7782yesN/A
B0K8D0LIPB_THEP32, ., 3, ., 1, ., 1, 8, 10.40080.92130.9254yesN/A
Q11XW2LIPB_CYTH32, ., 3, ., 1, ., 1, 8, 10.35960.91700.8606yesN/A
A8LYF4LIPB_SALAI2, ., 3, ., 1, ., 1, 8, 10.350.86020.9248yesN/A
Q29R99LIPT2_DANRE2, ., 3, ., 1, ., 1, 8, 10.48130.88640.9062yesN/A
Q8R9E0LIPB_THETN2, ., 3, ., 1, ., 1, 8, 10.40440.91260.9166yesN/A
A5MZJ0LIPB_CLOK52, ., 3, ., 1, ., 1, 8, 10.39420.85580.8412yesN/A
C1F3S1LIPB_ACIC52, ., 3, ., 1, ., 1, 8, 10.35470.84710.7886yesN/A
Q9VN27LIPT2_DROME2, ., 3, ., 1, ., 1, 8, 10.45410.91700.8974yesN/A
Q10404LIPB_MYCTU2, ., 3, ., 1, ., 1, 8, 10.390.78160.7782yesN/A
A4J246LIPB_DESRM2, ., 3, ., 1, ., 1, 8, 10.35980.88200.8859yesN/A
Q8A8S8LIPB_BACTN2, ., 3, ., 1, ., 1, 8, 10.38910.83840.8458yesN/A
Q5LDM3LIPB_BACFN2, ., 3, ., 1, ., 1, 8, 10.40900.81650.8461yesN/A
A3Q1S7LIPB_MYCSJ2, ., 3, ., 1, ., 1, 8, 10.38940.80340.7731yesN/A
A4XHV1LIPB_CALS82, ., 3, ., 1, ., 1, 8, 10.38490.91700.8936yesN/A
Q948J9LIP2P_ARATH2, ., 3, ., 1, ., -0.40880.74670.6151yesN/A
A6L9E1LIPB_PARD82, ., 3, ., 1, ., 1, 8, 10.37200.85150.8823yesN/A
A0R074LIPB_MYCS22, ., 3, ., 1, ., 1, 8, 10.38830.79470.7982yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.10.766
3rd Layer2.3.1.1810.824

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
COG0321221 COG0321, LipB, Lipoate-protein ligase B [Coenzyme 3e-61
PRK14345234 PRK14345, PRK14345, lipoate-protein ligase B; Prov 2e-48
TIGR00214184 TIGR00214, lipB, lipoate-protein ligase B 9e-46
PRK14348221 PRK14348, PRK14348, lipoate-protein ligase B; Prov 3e-42
PRK14344223 PRK14344, PRK14344, lipoate-protein ligase B; Prov 3e-42
PRK14341213 PRK14341, PRK14341, lipoate-protein ligase B; Prov 2e-35
PRK14342213 PRK14342, PRK14342, lipoate-protein ligase B; Prov 1e-28
PRK14347209 PRK14347, PRK14347, lipoate-protein ligase B; Prov 4e-27
PRK14346230 PRK14346, PRK14346, lipoate-protein ligase B; Prov 5e-23
PRK14343235 PRK14343, PRK14343, lipoate-protein ligase B; Prov 1e-20
PRK14349220 PRK14349, PRK14349, lipoate-protein ligase B; Prov 4e-20
pfam03099124 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B prote 8e-11
>gnl|CDD|223398 COG0321, LipB, Lipoate-protein ligase B [Coenzyme metabolism] Back     alignment and domain information 
 Score =  190 bits (486), Expect = 3e-61
 Identities = 75/217 (34%), Positives = 111/217 (51%), Gaps = 18/217 (8%)

Query: 1   MTKQVQLVR-LGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSL 59
              ++ LVR LGLV Y    ++ E + +      +        + L+EH PVYT G    
Sbjct: 6   SKPKIILVRELGLVDYQEAWQLMETFTDARADGGTPD-----EIWLVEHPPVYTAGQAG- 59

Query: 60  KEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT 119
                  E  L        +T+RGG +T+HGPGQLVAYPI++LK     ++ +V+++EQ 
Sbjct: 60  -----KAEHLLMPDDIPVVQTDRGGQVTYHGPGQLVAYPILDLKRPKLDVREYVRALEQA 114

Query: 120 -----QEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHIT 174
                 E+ + A   P   GV++++E K+ AIG+     +T HGLA+N + DL+ FN I 
Sbjct: 115 VINTLAEYGIEAERRPDRPGVWVEEERKIAAIGIRIRRGVTFHGLALNVNMDLSPFNRIV 174

Query: 175 PCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVF 211
           PCG    +VTSLS  L   +TVD V       F  + 
Sbjct: 175 PCGYAGMEVTSLSD-LGPPVTVDEVAKALVAAFAKLL 210

Length = 221
>gnl|CDD|184638 PRK14345, PRK14345, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|232877 TIGR00214, lipB, lipoate-protein ligase B Back     alignment and domain information
>gnl|CDD|172824 PRK14348, PRK14348, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|237683 PRK14344, PRK14344, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|237680 PRK14341, PRK14341, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|237681 PRK14342, PRK14342, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|172823 PRK14347, PRK14347, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|237684 PRK14346, PRK14346, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|237682 PRK14343, PRK14343, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|172825 PRK14349, PRK14349, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|217367 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B protein ligase family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 229
PRK14342213 lipoate-protein ligase B; Provisional 100.0
PRK14348221 lipoate-protein ligase B; Provisional 100.0
PRK14345234 lipoate-protein ligase B; Provisional 100.0
PRK14343235 lipoate-protein ligase B; Provisional 100.0
PRK14341213 lipoate-protein ligase B; Provisional 100.0
PRK14344223 lipoate-protein ligase B; Provisional 100.0
PRK14347209 lipoate-protein ligase B; Provisional 100.0
COG0321221 LipB Lipoate-protein ligase B [Coenzyme metabolism 100.0
PRK14346230 lipoate-protein ligase B; Provisional 100.0
PRK14349220 lipoate-protein ligase B; Provisional 100.0
TIGR00214184 lipB lipoate-protein ligase B. Involved in lipoate 100.0
KOG0325|consensus226 100.0
PRK03822 338 lplA lipoate-protein ligase A; Provisional 99.96
PRK14061 562 unknown domain/lipoate-protein ligase A fusion pro 99.96
TIGR00545324 lipoyltrans lipoyltransferase and lipoate-protein 99.95
COG0095248 LplA Lipoate-protein ligase A [Coenzyme metabolism 99.93
KOG3159|consensus336 99.84
PF03099125 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase f 99.61
PRK08330236 biotin--protein ligase; Provisional 99.49
PRK05935190 biotin--protein ligase; Provisional 98.72
PTZ00275285 biotin-acetyl-CoA-carboxylase ligase; Provisional 98.45
TIGR00121237 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] 98.42
PTZ00276245 biotin/lipoate protein ligase; Provisional 98.4
COG0340238 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenz 98.37
PRK11886319 bifunctional biotin--[acetyl-CoA-carboxylase] synt 98.07
PRK08477211 biotin--protein ligase; Provisional 98.02
PRK06955300 biotin--protein ligase; Provisional 97.66
PRK13325 592 bifunctional biotin--[acetyl-CoA-carboxylase] liga 97.4
PF04017183 DUF366: Domain of unknown function (DUF366); Inter 95.74
KOG1536|consensus649 94.81
COG2029189 Uncharacterized conserved protein [Function unknow 93.07
KOG0325|consensus226 88.65
>PRK14342 lipoate-protein ligase B; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.8e-66  Score=438.23  Aligned_cols=203  Identities=32%  Similarity=0.542  Sum_probs=187.4

Q ss_pred             CCceeEEEEcCCCChHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeeCCeEEeccCCccccchhhHhhhhhCCCcEEEe
Q psy3135           1 MTKQVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKT   80 (229)
Q Consensus         1 m~~~~~v~~~G~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~T~Gr~~~~~~~~~~~~~l~~~gi~v~r~   80 (229)
                      |++.+.++++|+++|+++|++|+++++++..      ..+|+|||||||||||+|+++..+      +.+...+++|+++
T Consensus         2 ~~~~~~~~~lg~~~Y~~a~~~Q~~l~~~~~~------~~~d~llllEH~pVyT~Gr~~~~~------~ll~~~~~~v~~~   69 (213)
T PRK14342          2 MQNKLIVRQLGLQPYEPVWQAMQEFTDTRDE------ETPDEIWLVEHPPVFTQGQAGKPE------HILNPGDIPVVQS   69 (213)
T ss_pred             CCCeEEEEeCCCcCHHHHHHHHHHHHHHHhC------CCCCEEEEEcCCCCccCCCCCChh------hccCCCCCcEEEe
Confidence            4577999999999999999999999988764      467999999999999999998332      2234568999999


Q ss_pred             ccCCceeEecCCCeEEEEeeecCCCCCCHHHHHHHHHhh-----cccCceEEeeCCCceEEeCCCCceeeeceeeeCcEE
Q psy3135          81 NRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT-----QEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYIT  155 (229)
Q Consensus        81 ~rGGg~tyHgpGQLv~Y~il~l~~~~~~~~~~v~~le~~-----~~~gi~a~~~~~~~gv~v~~~rKIasiG~~i~~~it  155 (229)
                      +|||++|||||||||+|||+||++.+.++++|++.||++     +.|||++.+.++.+|||+++ +||||||+++++|+|
T Consensus        70 ~RGG~iTyHGPGQLV~YpIl~L~~~~~~~~~yv~~lE~~vi~~l~~~gi~~~~~~~~~GVWv~~-~KIaaIGv~v~r~vT  148 (213)
T PRK14342         70 DRGGQVTYHGPGQLVMYVLLDLKRLKLGVRQLVTAIEQTVINTLAEYGIEAHAKPDAPGVYVDG-KKIASLGLRIRRGCS  148 (213)
T ss_pred             cCCCceEEECCCeEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHcCCceeecCCCCcCcccC-CEEEEEEEeEeccee
Confidence            999999999999999999999999999999999999998     89999999989889999999 999999999999999


Q ss_pred             EEeeeeecCCCccccccccCCCCCCCCeeeechhcCCCCCHHHHHHHHHHHHHHhhcccccc
Q psy3135         156 HHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSE  217 (229)
Q Consensus       156 ~HG~alNv~~dl~~f~~I~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~~~  217 (229)
                      +|||||||++||++|+.|+|||++++.||||++ ++.++++++|++.++++|++.|+++..+
T Consensus       149 ~HG~AlNv~~dL~~F~~IvPCGl~~~~vTSl~~-~~~~~~~~~v~~~~~~~f~~~f~~~~~~  209 (213)
T PRK14342        149 FHGLALNVNMDLSPFLRINPCGYAGLEMTQLSD-LGGPATVDEVAPRLLAELLALLGYNDQE  209 (213)
T ss_pred             ecceeEecCCCchhhCcEecCCCCCCcEeeHHH-hCCCCCHHHHHHHHHHHHHHHhCCcchh
Confidence            999999999999999999999999999999987 5889999999999999999999977554

>PRK14348 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14345 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14343 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14341 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14344 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14347 lipoate-protein ligase B; Provisional Back     alignment and domain information
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism] Back     alignment and domain information
>PRK14346 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14349 lipoate-protein ligase B; Provisional Back     alignment and domain information
>TIGR00214 lipB lipoate-protein ligase B Back     alignment and domain information
>KOG0325|consensus Back     alignment and domain information
>PRK03822 lplA lipoate-protein ligase A; Provisional Back     alignment and domain information
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional Back     alignment and domain information
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase Back     alignment and domain information
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism] Back     alignment and domain information
>KOG3159|consensus Back     alignment and domain information
>PF03099 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase family This entry is just a subset of the Pfam family; InterPro: IPR004143 This domain is found in biotin protein ligase, lipoate-protein ligase A and B Back     alignment and domain information
>PRK08330 biotin--protein ligase; Provisional Back     alignment and domain information
>PRK05935 biotin--protein ligase; Provisional Back     alignment and domain information
>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional Back     alignment and domain information
>TIGR00121 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] ligase region Back     alignment and domain information
>PTZ00276 biotin/lipoate protein ligase; Provisional Back     alignment and domain information
>COG0340 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism] Back     alignment and domain information
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional Back     alignment and domain information
>PRK08477 biotin--protein ligase; Provisional Back     alignment and domain information
>PRK06955 biotin--protein ligase; Provisional Back     alignment and domain information
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed Back     alignment and domain information
>PF04017 DUF366: Domain of unknown function (DUF366); InterPro: IPR007162 This is an archaeal family of unknown function Back     alignment and domain information
>KOG1536|consensus Back     alignment and domain information
>COG2029 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0325|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
1w66_A232 Structure Of A Lipoate-protein Ligase B From Mycoba 2e-30
2qht_A210 Structural Basis Of Octanoic Acid Recognition By Li 1e-25
2qhs_A237 Structural Basis Of Octanoic Acid Recognition By Li 1e-25
>pdb|1W66|A Chain A, Structure Of A Lipoate-protein Ligase B From Mycobacterium Tuberculosis Length = 232 Back     alignment and structure 
Iteration: 1

 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/200 (39%), Positives = 107/200 (53%), Gaps = 21/200 (10%)
Query: 5   VQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDE 64
           + + +LG V Y    ++Q    +      ++ +  + TLLLLEH  VYT G R+     E
Sbjct: 14  IDVRQLGTVDYRTAWQLQRELAD------ARVAGGADTLLLLEHPAVYTAGRRT-----E 62
Query: 65  NLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT----- 119
             E  ++  G     T+RGG IT+HGPGQLV YPII L      +  +V+ +E++     
Sbjct: 63  THERPID--GTPVVDTDRGGKITWHGPGQLVGYPIIGLAEPLDVVN-YVRRLEESLIQVC 119
Query: 120 QEFSLNAGLIPKYTGVFLDDE--YKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCG 177
            +  L+AG +   +GV+L      KV AIGV  S   T HG A+NCD DL  F  I PCG
Sbjct: 120 ADLGLHAGRVDGRSGVWLPGRPARKVAAIGVRVSRATTLHGFALNCDCDLAAFTAIVPCG 179
Query: 178 IKDKQVTSLSKHLSKDITVD 197
           I D  VTSLS  L + +TVD
Sbjct: 180 ISDAAVTSLSAELGRTVTVD 199
>pdb|2QHT|A Chain A, Structural Basis Of Octanoic Acid Recognition By Lipoate-Protein Ligase B Length = 210 Back     alignment and structure
>pdb|2QHS|A Chain A, Structural Basis Of Octanoic Acid Recognition By Lipoate-protein Ligase B Length = 237 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
2qhs_A237 Lipoyltransferase; globular protein; HET: OCA; 1.5 5e-82
1w66_A232 Lipoyltransferase; lipoate-protein ligase B, lipoi 3e-81
2p0l_A288 Lipoate-protein ligase A; PFAM, lopoate-protein li 4e-04
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A Length = 237 Back     alignment and structure
 Score =  243 bits (623), Expect = 5e-82
 Identities = 74/225 (32%), Positives = 110/225 (48%), Gaps = 14/225 (6%)

Query: 3   KQVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEY 62
            +  +  LGLV Y      Q+    ++        N   TLLLLEH  V T+G ++  E 
Sbjct: 21  MEFLVEDLGLVPYGEAWAYQKRVHREVVA-----GNRPPTLLLLEHPRVITLGRKATGEN 75

Query: 63  DENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT--- 119
               E    + G + Y   RGG +T+HGPGQLV YPI  +      ++ F++ IE+    
Sbjct: 76  LLFPESWYRENGFELYWVERGGDVTYHGPGQLVGYPIFPVGR---EVRRFLRQIEEAIVR 132

Query: 120 --QEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCG 177
               + ++A   P Y GV++ ++ K+CAIGV     ++ HG A+N +TDL  F  I PCG
Sbjct: 133 VAAGYGISAYPTPGYAGVWVGED-KLCAIGVAVKEGVSFHGFALNVNTDLNDFTVIVPCG 191

Query: 178 IKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVELDE 222
           +K K VTSL K L + + ++         F  VF     E  + E
Sbjct: 192 LKGKGVTSLEKLLGRKVPMEEAKARVVAAFAEVFGLRPVEGSVHE 236
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3 Length = 232 Back     alignment and structure
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3 Length = 288 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query229
1w66_A232 Lipoyltransferase; lipoate-protein ligase B, lipoi 100.0
2qhs_A237 Lipoyltransferase; globular protein; HET: OCA; 1.5 100.0
2p0l_A288 Lipoate-protein ligase A; PFAM, lopoate-protein li 100.0
2p5i_A288 BH3822 protein; PFAM03099, structural genomics, PS 100.0
2c8m_A262 Lipoate-protein ligase A; lipoylation; HET: LPA; 1 100.0
1vqz_A 341 Lipoate-protein ligase, putative; class II AARS an 100.0
3a7r_A 337 Lipoate-protein ligase A; adenylate-forming enzyme 100.0
2e5a_A 347 Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 100.0
2dxu_A235 Biotin--[acetyl-COA-carboxylase] ligase; biotin bi 98.64
2eay_A233 Biotin [acetyl-COA-carboxylase] ligase; biotin bio 98.64
3rkx_A323 Biotin-[acetyl-COA-carboxylase] ligase; biotin pro 98.59
3rux_A270 BIRA bifunctional protein; biotin-protein ligase, 98.54
2ej9_A237 Putative biotin ligase; biotin biosynthesis, monom 98.5
3bfm_A235 Biotin protein ligase-like protein of unknown FUN; 98.3
1bia_A321 BIRA bifunctional protein; transcription regulatio 98.26
2ddz_A190 190AA long hypothetical protein; hexamer, structur 95.76
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3 Back     alignment and structure
Probab=100.00  E-value=9.2e-61  Score=411.28  Aligned_cols=200  Identities=39%  Similarity=0.606  Sum_probs=185.7

Q ss_pred             ceeEEEEcCCCChHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeeCCeEEeccCCccccchhhHhhhhhCCCcEEEecc
Q psy3135           3 KQVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNR   82 (229)
Q Consensus         3 ~~~~v~~~G~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~T~Gr~~~~~~~~~~~~~l~~~gi~v~r~~r   82 (229)
                      ..+.++++|++||.++|++|+.+++.+.+      ..+++|||||||||||+|++|+..       .+...|++|+||+|
T Consensus        12 ~~~~~~~lg~~~Y~~a~~~q~~l~~~~~~------~~~d~l~l~eh~pv~TiG~~q~~~-------~l~~~gi~Vvr~~r   78 (232)
T 1w66_A           12 SAIDVRQLGTVDYRTAWQLQRELADARVA------GGADTLLLLEHPAVYTAGRRTETH-------ERPIDGTPVVDTDR   78 (232)
T ss_dssp             SCCEEEEEEECCHHHHHHHHHHHHHHHHT------TCCCEEEEEECCSEEEECTTCCGG-------GSCTTCCCCEECSS
T ss_pred             ceEEEEeCCCcCHHHHHHHHHHHHHHhhC------CCCCEEEEEecCCEEEeCCCCChh-------hhcccCCeEEEecC
Confidence            46899999999999999999999999875      367999999999999999999332       24456999999999


Q ss_pred             CCceeEecCCCeEEEEeeecCCCCCCHHHHHHHHHhh-----cccCceEEeeCCCceEEeC---CCCceeeeceeeeCcE
Q psy3135          83 GGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT-----QEFSLNAGLIPKYTGVFLD---DEYKVCAIGVHSSLYI  154 (229)
Q Consensus        83 GGg~tyHgpGQLv~Y~il~l~~~~~~~~~~v~~le~~-----~~~gi~a~~~~~~~gv~v~---~~rKIasiG~~i~~~i  154 (229)
                      ||++|||||||+|+|||+++++ +.++++|++.||++     ++|||+|++.+++||||++   + |||||+|+++++|+
T Consensus        79 GG~~tYHgPGQlv~Y~Il~l~~-~~~v~~~v~~le~~vI~~L~~~Gi~a~~~~g~~gV~v~~~~~-rKIaaig~r~~~~v  156 (232)
T 1w66_A           79 GGKITWHGPGQLVGYPIIGLAE-PLDVVNYVRRLEESLIQVCADLGLHAGRVDGRSGVWLPGRPA-RKVAAIGVRVSRAT  156 (232)
T ss_dssp             SSSEEEECTTEEEEEEECBBCS-SCCHHHHHHHHHHHHHHHHHHTTCCCEEETTEEEEEECSSSC-EEEEEEEEEEETTE
T ss_pred             CCceEEECCCCeEEEEEEECCC-CCCHHHHHHHHHHHHHHHHHHcCCCeEecCCCCeEEecCCCC-CEEEEeeeeeeCCE
Confidence            9999999999999999999988 78999999999988     8999999998988999999   8 99999999999999


Q ss_pred             EEEeeeeecCCCccccccccCCCCCCCCeeeechhcCCCCCHHHHHHHHHHHHHHhhcccccc
Q psy3135         155 THHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSE  217 (229)
Q Consensus       155 t~HG~alNv~~dl~~f~~I~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~~~  217 (229)
                      |+||++|||++||++|..|+|||+.+++||||+++++.+++++++++.|+++|++.|+.+...
T Consensus       157 t~HG~aLNv~~dL~~f~~I~pcgi~~k~vtSl~~~lg~~~~~~ev~~~l~~~f~~~~~~~~~~  219 (232)
T 1w66_A          157 TLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGVLPV  219 (232)
T ss_dssp             EEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSCCCHHHHHHHHHHHHHHHHTTCCC-
T ss_pred             EEcceEEecCcChHHhcCccccccCCCceeeeHHHhCCCCCHHHHHHHHHHHHHHHhCccccc
Confidence            999999999999999999999999999999999889999999999999999999999987543
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A Back     alignment and structure
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3 Back     alignment and structure
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3 Back     alignment and structure
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A Back     alignment and structure
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3 Back     alignment and structure
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* Back     alignment and structure
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A Back     alignment and structure
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ... Back     alignment and structure
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A* Back     alignment and structure
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A* Back     alignment and structure
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A Back     alignment and structure
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii} Back     alignment and structure
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP} Back     alignment and structure
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* Back     alignment and structure
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 229
d1w66a1216 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycoba 3e-40
d2c8ma1256 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Ther 8e-26
d1x2ga2246 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal do 1e-21
d1vqza2241 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-te 8e-20
d2p5ia1265 d.104.1.3 (A:14-278) Hypothetical protein BH3822 { 2e-18
d2p0la1269 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Stre 9e-15
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 216 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Lipoyltransferase LipB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  135 bits (341), Expect = 3e-40
 Identities = 72/218 (33%), Positives = 96/218 (44%), Gaps = 19/218 (8%)

Query: 3   KQVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEY 62
             + + +LG V Y    ++Q    +         +  + TLLLLEH  VYT G R+    
Sbjct: 10  SAIDVRQLGTVDYRTAWQLQRELADARV------AGGADTLLLLEHPAVYTAGRRTETHE 63

Query: 63  DENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQS----IEQ 118
                            T+RGG IT+HGPGQLV YPII L      + +  +     I+ 
Sbjct: 64  RPIDG-------TPVVDTDRGGKITWHGPGQLVGYPIIGLAEPLDVVNYVRRLEESLIQV 116

Query: 119 TQEFSLNAGLIPK--YTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPC 176
             +  L+AG +       +      KV AIGV  S   T HG A+NCD DL  F  I PC
Sbjct: 117 CADLGLHAGRVDGRSGVWLPGRPARKVAAIGVRVSRATTLHGFALNCDCDLAAFTAIVPC 176

Query: 177 GIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECE 214
           GI D  VTSLS  L + +TVD V         +  +  
Sbjct: 177 GISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGV 214
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]} Length = 256 Back     information, alignment and structure
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 246 Back     information, alignment and structure
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 241 Back     information, alignment and structure
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]} Length = 265 Back     information, alignment and structure
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]} Length = 269 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query229
d1w66a1216 Lipoyltransferase LipB {Mycobacterium tuberculosis 100.0
d1vqza2241 LplA-like protein SP1160, N-terminal domain {Strep 100.0
d2p0la1269 Lipoate-protein ligase A {Streptococcus agalactiae 100.0
d2c8ma1256 Lipoate-protein ligase A {Thermoplasma acidophilum 100.0
d2p5ia1265 Hypothetical protein BH3822 {Bacillus halodurans [ 100.0
d1x2ga2246 Two-domain LplA, N-terminal domain {Escherichia co 100.0
d2zgwa2188 Biotin--[acetyl-CoA-carboxylase] ligase catalytic 98.95
d1biaa3207 Biotin repressor/biotin holoenzyme synthetase, cat 98.11
d2ddza1188 Uncharacterized protein PH0223 {Pyrococcus horikos 94.82
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Lipoyltransferase LipB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=9.8e-64  Score=422.81  Aligned_cols=199  Identities=39%  Similarity=0.609  Sum_probs=184.1

Q ss_pred             CceeEEEEcCCCChHHHHHHHHHHHHHHhhccCCCCCCCCeEEEEeeCCeEEeccCCccccchhhHhhhhhCCCcEEEec
Q psy3135           2 TKQVQLVRLGLVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTN   81 (229)
Q Consensus         2 ~~~~~v~~~G~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~T~Gr~~~~~~~~~~~~~l~~~gi~v~r~~   81 (229)
                      ++.+.+.++|++||+++|++|+++++.+.+      ..+|++||||||||||+|++++.       +.+...++||++++
T Consensus         9 ~~~i~i~~LG~v~Y~~a~~~q~~~~~~~~~------~~~d~llllEH~pVyT~G~~~~~-------~~~~~~~i~v~~td   75 (216)
T d1w66a1           9 LSAIDVRQLGTVDYRTAWQLQRELADARVA------GGADTLLLLEHPAVYTAGRRTET-------HERPIDGTPVVDTD   75 (216)
T ss_dssp             CSCCEEEEEEECCHHHHHHHHHHHHHHHHT------TCCCEEEEEECCSEEEECTTCCG-------GGSCTTCCCCEECS
T ss_pred             CCceEEEECCccCHHHHHHHHHHHHHHHhC------CCCCeEEEEecCCceeecccCcc-------ccccccccceeecC
Confidence            367999999999999999999999998875      46899999999999999999832       23445699999999


Q ss_pred             cCCceeEecCCCeEEEEeeecCCCCCCHHHHHHHHHhh-----cccCceEEeeCCCceEEeCCC--CceeeeceeeeCcE
Q psy3135          82 RGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT-----QEFSLNAGLIPKYTGVFLDDE--YKVCAIGVHSSLYI  154 (229)
Q Consensus        82 rGGg~tyHgpGQLv~Y~il~l~~~~~~~~~~v~~le~~-----~~~gi~a~~~~~~~gv~v~~~--rKIasiG~~i~~~i  154 (229)
                      |||++|||||||||+|||+||++ ..++++|++.||++     +.|||++.+.++.+|||+++.  +||||+|+++++|+
T Consensus        76 RGG~vTyHGPGQlV~Ypil~l~~-~~~~~~~v~~le~~ii~~l~~~gi~~~~~~~~~GVwv~~~~~~KIasiGv~v~~~v  154 (216)
T d1w66a1          76 RGGKITWHGPGQLVGYPIIGLAE-PLDVVNYVRRLEESLIQVCADLGLHAGRVDGRSGVWLPGRPARKVAAIGVRVSRAT  154 (216)
T ss_dssp             SSSSEEEECTTEEEEEEECBBCS-SCCHHHHHHHHHHHHHHHHHHTTCCCEEETTEEEEEECSSSCEEEEEEEEEEETTE
T ss_pred             CCceEEEecCCceeeEEEecccc-ccchhhhHHHHHHHHHHHHHhccccccccccCCceeeecchhhHHHHHHHHhccce
Confidence            99999999999999999999986 67999999999998     889999999999999999861  49999999999999


Q ss_pred             EEEeeeeecCCCccccccccCCCCCCCCeeeechhcCCCCCHHHHHHHHHHHHHHhhccc
Q psy3135         155 THHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECE  214 (229)
Q Consensus       155 t~HG~alNv~~dl~~f~~I~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~  214 (229)
                      |+||+||||++||++|+.|+|||+++..||||++++|.++++++|++.++++|++.|+..
T Consensus       155 t~HG~alNv~~dL~~f~~I~pCGl~~~~vtSl~~~lg~~v~~~ev~~~l~~~~~~~f~~~  214 (216)
T d1w66a1         155 TLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGV  214 (216)
T ss_dssp             EEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             eecceEEeccCChhhcCeEEcCCCCCCceeeeHHHhCCCCCHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999999889999999999999999999999864
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]} Back     information, alignment and structure
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ddza1 d.104.1.4 (A:3-190) Uncharacterized protein PH0223 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure