Psyllid ID: psy3199

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140----

MASAASFTSMGALFDLPSDHDVLARLKDAARKFLPDGWRDWTLVNSIDLEMEVDSSTLNKLRFALPTLEIVRAFDPSANCLKEYPYRDMKKKMLSWAFTRGLVLSPSAFSKQIRGSSHSHDIVARAVAPLKSEFVSRETADRILSNIEKPASRSSSVAMESTGEAARDLSLDDRFKAHEEKMMGRINETINSLFSRLQSELPAFNREESSHSETEESEFPERDVSPPPDSWEAPPLFDSPEEITVSPDLPFSFAPCVKEREPDVPLPSPEAEAHGRSSQKLDSVGWNRIKYMEAQKEIQAGGIFARLQPNPELDVPHNSLADLLACNDGAFGILCHGLILQRLALADTINMVVSKHPSVKSDLISALSSKESMFKKTSDNLLQYVCGKRAEAIASRRKLLEPAIRVPPRILKDIPPSEEYLFDPKSLAEAMRAQSSSGKNGKQRIPSIPSVNINVDMMSEPACKGKQHRKIRGSSHSHDIVARAVAPLKSEFVSRETADRILSNIEKPASRSSSVAMESTGEAARDLSLDDRFKAHEEKMMGRINETINSLFSRLQSELPAFNREESSHSETEESEFPERDVSPPPDSWEAPPLFDSPEEITVSPDLPFSFAPCVKEREPDVPLPSPEAEAHGRSSQKLDSVGWNRIKYMEAQKEIQAGGIFARLQPNPELDVPHNSLADLLACNDGAFGILCHGLILQRLALADTINMVVSKHPSVKSDLISALSSKESMFKKTSDNLLQYVCGKRAEAIASRRKLLEPAIRVPPRILKDIPPSEEYLFDPKSLAEAMRAQSSSSWKKAEVIMGFLSFASFVIPLGKLMFRHIQRLSLRLKKDPLKLCKIPPMALSQMRWWIAALGTPSPIFRRRTQVFVTSDASDSGWGARVDNRMIKGSWTECQKKWHINVKELFAVQMSLEKNLAYVQNKVVLIQSDNLTVVCYIQKQGGTKSINLLRGVEEIFRIATVHNITVQAQYIPGMYNNIADSLSRSQVLPDWHLLPHLTSWIFQNWGRPVIDLFASAGSAVVPRYVSRSARDTQASFIDAFSMDWTFPLAWVFPPPPLMPRVLNHLNSAQGLFIVIAPTWDKVFWYPDLQRRAICAPLSLKNLSSCLVDLSTGRPPPDVVSLRLQAWLVRGGSPRLPDGTSLN

cccccccccccccccccccHHHHHHHHHHHHHcccccccccEEEEEcccEEEEccccccHHHcccccHHHHHHcccccccccccccHHHHHHHHHHHHHcccccccHHHHHccccccccHHHHHHHccccccccccHHHHHHHHHcccccccccccHHHccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccHHHHHccccccccccccccHHHHHHHHHHHHHccEEEEccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHccccccHHHHHHHHcccHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccEEEEccccccccccccccccccccccccHHHHHHccccccccccHHHHHHHHHcccccccccccHHcHHcHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEcEEEEcccHHHHHHHHHHHHHHHHHHHHccEEccccccccccEEEcccEEEEcccccHHcccHHHHHHHHHHcccccHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccccccccEEEEccccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEEEEEcccEEEHHHHHccccccHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccEEccccccccEEccccccHHHHHHHHHHcccEEEEEEccccccccHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEEcccccccccccccc

ccccccccccccHccccccHHHHHHHHHHHHHHccccccccEEEEccEEEEEEccHHHHHHHHccccHHHEHcccccHHHHccccHHHHHHHHHHHHHHcccEEccHHHHHHccccccccHHEEEEccccccHcccHHHHHHHHHHccccccccccEEEcccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccHHHHHccccccccccccHHHHHHHHHHHHHHHccHEEEcccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccHHHccccccHHHcccHHHHHHHHHHHccccccccccccccccEEEEcccccccccccccccEEccccccccEEEEEEcccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHcHHHHHHcccccccccccccccccccccccccccccccccEEEEEccccccccccHHHccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHcccEEEcccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHHHHHcccEEccccccccccEEEEcEEEEEEccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEccHHHHHHHHHHHHHHHccccccccccEEEEEEEccccccEEEEccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHcccccccHHcccHHHHHHHHHHcccccccEEcccccccccEEEcccccccccccEcEEEEccccccEEccccHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHcccccccccHHHHHHHccccccccHccccccEEEccccccccccccccc

masaasftsmgalfdlpsdHDVLARLKDAARKflpdgwrdwtlVNSIDLEMEVDSSTLNKLRFalptleivrafdpsanclkeypyrdmKKKMLSWAFTrglvlspsafskqirgsshshDIVARAVaplksefvsreTADRILSniekpasrsssvaMESTGEAARDLSLDDRFKAHEEKMMGRINETINSLFSRLQSelpafnreesshseteesefperdvspppdsweapplfdspeeitvspdlpfsfapcvkerepdvplpspeaeahgrssqkldsvGWNRIKYMEAQKEIQAggifarlqpnpeldvphnsladllacndgafgILCHGLILQRLALADTINMVvskhpsvkSDLISALSSKESMFKKTSDNLLQYVCGKRAEAIASRRKLLepairvpprilkdippseeylfdpkSLAEAMRAqsssgkngkqripsipsvninvdmmsepackgkqhrkirgsshshDIVARAVaplksefvsreTADRILSniekpasrsssvaMESTGEAARDLSLDDRFKAHEEKMMGRINETINSLFSRLQSelpafnreesshseteesefperdvspppdsweapplfdspeeitvspdlpfsfapcvkerepdvplpspeaeahgrssqkldsvGWNRIKYMEAQKEIQAggifarlqpnpeldvphnsladllacndgafgILCHGLILQRLALADTINMVvskhpsvkSDLISALSSKESMFKKTSDNLLQYVCGKRAEAIASRRKLLepairvpprilkdippseeylfdpkSLAEAMRAQSSSSWKKAEVIMGFLSFASFVIPLGKLMFRHIQRLSLRlkkdplklckippmalSQMRWWIAalgtpspifrrrtqvfvtsdasdsgwgarvdnrmikgsWTECQKKWHINVKELFAVQMSLEKNLAYVQNKVVLIQSDNLTVVCYIQKqggtksinLLRGVEEIFRIATVHNITVqaqyipgmynniadslsrsqvlpdwhllphltswifqnwgrpVIDLFASagsavvpryvsrsarDTQASFIDAfsmdwtfplawvfpppplmprVLNHLNSAQGLFIVIaptwdkvfwypdlqrraicaplsLKNLSSCLvdlstgrpppdvVSLRLQAWLvrggsprlpdgtsln

masaasftsmgalfdLPSDHDVLARLKDAArkflpdgwrdWTLVNSIDLEMEVDSSTLNKLRFALPTleivrafdpsancLKEYPYRDMKKKMLSWAFTRGLVLSPSAFSKQIRGSSHSHDIVARAvaplksefvsreTADRilsniekpasrsssvamestgeaardlsldDRFKAHEEKMMGRINETINSLFSRLQSELPafnreesshseteesefperdvspppdSWEAPPLFDSPEEITVSPDLPFSFAPCVKEREPDVPLpspeaeahgrssqkldsvGWNRIKYMEAQKEIQAGGIFARLQPNPELDVPHNSLADLLACNDGAFGILCHGLILQRLALADTINMVVSKHPSVKSDLISALSSKESMFKKTSDNLLQYVCGKRAEAIASrrkllepairvpprilkdippsEEYLFDPKSLAEAMRAqsssgkngkqripsipsvninvDMMSEPACKGKQHRkirgsshshdIVARAvaplksefvsreTADRilsniekpasrsssvamestgeaardlsldDRFKAHEEKMMGRINETINSLFSRLQSELPafnreesshseteesefperdvspppdSWEAPPLFDSPEEITVSPDLPFSFAPCVKEREPDVPLpspeaeahgrssqkldsvGWNRIKYMEAQKEIQAGGIFARLQPNPELDVPHNSLADLLACNDGAFGILCHGLILQRLALADTINMVVSKHPSVKSDLISALSSKESMFKKTSDNLLQYVCGKRAEAIASrrkllepairvpprilkdippsEEYLFDPKSLAEAMRAQSSSSWKKAEVIMGFLSFASFVIPLGKLMFRHIQRLSlrlkkdplklCKIPPMALSQMRWWIAALGTPSPIFRRRTQVFvtsdasdsgwgarvdnrmiKGSWTECQKKWHINVKELFAVQMSLEKNLAYVQNKVVLIQSDNLTVVCYIQKqggtksinlLRGVEEIFRIATVHNITVQAQYIPGMYNNIADSLSRSQVLPDWHLLPHLTSWIFQNWGRPVIDLFASAGSAVVPRYVSRSARDTQASFIDAFSMDWTFPLAWVFPPPPLMPRVLNHLNSAQGLFIVIAPTWDKVFWYPDLQRRAICAPLSLKNLSSCLVDLSTGRPPPDVVSLRLQAwlvrggsprlpdgtsln

MASAASFTSMGALFDLPSDHDVLARLKDAARKFLPDGWRDWTLVNSIDLEMEVDSSTLNKLRFALPTLEIVRAFDPSANCLKEYPYRDMKKKMLSWAFTRGLVLSPSAFSKQIRGSSHSHDIVARAVAPLKSEFVSRETADRILSNIEKPASRSSSVAMESTGEAARDLSLDDRFKAHEEKMMGRINETINSLFSRLQSELPAFNReesshseteesefpeRDVSPPPDSWEAPPLFDSPEEITVSPDLPFSFAPCVKEREPDVPLPSPEAEAHGRSSQKLDSVGWNRIKYMEAQKEIQAGGIFARLQPNPELDVPHNSLADLLACNDGAFGILCHGLILQRLALADTINMVVSKHPSVKSDLISALSSKESMFKKTSDNLLQYVCGKRAEAIASRRKLLEPAIRVPPRILKDIPPSEEYLFDPKSLAEAMRAQSSSGKNGKQRIPSIPSVNINVDMMSEPACKGKQHRKIRGSSHSHDIVARAVAPLKSEFVSRETADRILSNIEKPASRSSSVAMESTGEAARDLSLDDRFKAHEEKMMGRINETINSLFSRLQSELPAFNReesshseteesefpeRDVSPPPDSWEAPPLFDSPEEITVSPDLPFSFAPCVKEREPDVPLPSPEAEAHGRSSQKLDSVGWNRIKYMEAQKEIQAGGIFARLQPNPELDVPHNSLADLLACNDGAFGILCHGLILQRLALADTINMVVSKHPSVKSDLISALSSKESMFKKTSDNLLQYVCGKRAEAIASRRKLLEPAIRVPPRILKDIPPSEEYLFDPKSLAEAMRAQSSSSWKKAEVIMGFLSFASFVIPLGKLMFRHIQRLSLRLKKDPLKLCKIPPMALSQMRWWIAALGTPSPIFRRRTQVFVTSDASDSGWGARVDNRMIKGSWTECQKKWHINVKELFAVQMSLEKNLAYVQNKVVLIQSDNLTVVCYIQKQGGTKSINLLRGVEEIFRIATVHNITVQAQYIPGMYNNIADSLSRSQVLPDWHLLPHLTSWIFQNWGRPVIDLFASAGSAVVPRYVSRSARDTQASFIDAFSMDWTFPLAWVFPPPPLMPRVLNHLNSAQGLFIVIAPTWDKVFWYPDLQRRAICAPLSLKNLSSCLVDLSTGRPPPDVVSLRLQAWLVRGGSPRLPDGTSLN

***********ALFDLPSDHDVLARLKDAARKFLPDGWRDWTLVNSIDLEMEVDSSTLNKLRFALPTLEIVRAFDPSANCLKEYPYRDMKKKMLSWAFTRGLVLSPSAF************IVARAV************************************************************************************************************************************************************VGWNRIKYMEAQKEIQAGGIFARLQPNPELDVPHNSLADLLACNDGAFGILCHGLILQRLALADTINMVVSKH**********************DNLLQYVCGKRAEAIASRRKLLEPAIRVPPRIL**************************************************************************************************************************************************************************************************************************************VGWNRIKYMEAQKEIQAGGIFARLQPNPELDVPHNSLADLLACNDGAFGILCHGLILQRLALADTINMVVSKH**********************DNLLQYVCGKRAEAIASRRKLLEPAIRVPPRILK**************************WKKAEVIMGFLSFASFVIPLGKLMFRHIQRLSLRLKKDPLKLCKIPPMALSQMRWWIAALGTPSPIFRRRTQVFVTSDASDSGWGARVDNRMIKGSWTECQKKWHINVKELFAVQMSLEKNLAYVQNKVVLIQSDNLTVVCYIQKQGGTKSINLLRGVEEIFRIATVHNITVQAQYIPGMYNNIADSLSRSQVLPDWHLLPHLTSWIFQNWGRPVIDLFASAGSAVVPRYVSRSARDTQASFIDAFSMDWTFPLAWVFPPPPLMPRVLNHLNSAQGLFIVIAPTWDKVFWYPDLQRRAICAPLSLKNLSSCLVDLSTGRPPPDVVSLRLQAWLVR*************

*********MGALFDLPSDHDVLARLKDAARKFLPDGWRDWTLVNSIDLEMEVDSSTLNKLRFALPTLEIVRAFDPSANCLKEYPYRDMKKKMLSWAFTRGLVLSPSAF**********HDIVARAVAPLKSEFVSRETADRIL************************LSLDDRFKAHEEKMMGRINETINSLFSRLQS*******************************WEAPPLFDSPEEITVSPDLPFSFAPCVKEREP*********************VGWNRIKYMEAQKEIQAGGIFARLQPNPELDVPHNSLADLLACNDGAFGILCHGLILQRLALADTINMVVSKHPSVKSDLISAL********KTSDNLLQYVCGKRAEAIASRRKLLEPAIRVPPRILKDIPPSEEYLFDPK***********************PSVNINVDMMS********************IVARAVAPLK*******TA*****************************SLDDRFKAHEEKMMGRINETINSLF*************************************E************VSPDLPFSFAPCVKEREPDVPLPSPEAEAHGRSSQKLDSVGWNRIKYMEAQKEIQAGGIFARLQPNPELDVPHNSLADLLACNDGAFGILCHGLILQRLALADTINMVVSKHPSVKSDLISALSSKESMFKKTSDNLLQYVCGKRAEAIASRRKLLEPAIRVPPRILKDIPPSEEYLFDPKSLAEAMRAQSSSSWKKAEVIMGFLSFASFVIPLGKLMFRHIQRLSLRLKKDPLKLCKIPPMALSQMRWWIAALGTPSPIFRRRTQVFVTSDASDSGWGARVDNRMIKGSWTECQKKWHINVKELFAVQMSLEKNLAYVQNKVVLIQSDNLTVVCYIQKQGGTKSINLLRGVEEIFRIATVHNITVQAQYIPGMYNNIADSLSRSQVLPDWHLLPHLTSWIFQNWGRPVIDLFASAGSAVVPRYVSRSARDTQASFIDAFSMDWTFPLAWVFPPPPLMPRVLNHLNSAQGLFIVIAPTWDKVFWYPDLQRRAICAPLSLKNLSSC**************SLRLQA*****************

********SMGALFDLPSDHDVLARLKDAARKFLPDGWRDWTLVNSIDLEMEVDSSTLNKLRFALPTLEIVRAFDPSANCLKEYPYRDMKKKMLSWAFTRGLVLSPSAF**********HDIVARAVAPLKSEFVSRETADRILSNIEK******************DLSLDDRFKAHEEKMMGRINETINSLFSRLQSELPA***************************WEAPPLFDSPEEITVSPDLPFSFAPCVKER*********************DSVGWNRIKYMEAQKEIQAGGIFARLQPNPELDVPHNSLADLLACNDGAFGILCHGLILQRLALADTINMVVSKHPSVKSDLISALSSKESMFKKTSDNLLQYVCGKRAEAIASRRKLLEPAIRVPPRILKDIPPSEEYLFDPKSLA***************RIPSIPSVNINVDMMSEPA***************HDIVARAVAPLKSEFVSRETADRILSNIEK******************DLSLDDRFKAHEEKMMGRINETINSLFSRLQSELPA***************************WEAPPLFDSPEEITVSPDLPFSFAPCVKER*********************DSVGWNRIKYMEAQKEIQAGGIFARLQPNPELDVPHNSLADLLACNDGAFGILCHGLILQRLALADTINMVVSKHPSVKSDLISALSSKESMFKKTSDNLLQYVCGKRAEAIASRRKLLEPAIRVPPRILKDIPPSEEYLFDPKSLA***********KKAEVIMGFLSFASFVIPLGKLMFRHIQRLSLRLKKDPLKLCKIPPMALSQMRWWIAALGTPSPIFRRRTQVFVTSDASDSGWGARVDNRMIKGSWTECQKKWHINVKELFAVQMSLEKNLAYVQNKVVLIQSDNLTVVCYIQKQGGTKSINLLRGVEEIFRIATVHNITVQAQYIPGMYNNIADSLSRSQVLPDWHLLPHLTSWIFQNWGRPVIDLFASAGSAVVPRYVSRSARDTQASFIDAFSMDWTFPLAWVFPPPPLMPRVLNHLNSAQGLFIVIAPTWDKVFWYPDLQRRAICAPLSLKNLSSCLVDLSTGRPPPDVVSLRLQAWLVRGGSPRLPDGTSLN

*************FDLPSDHDVLARLKDAARKFLPDGWRDWTLVNSIDLEMEVDSSTLNKLRFALPTLEIVRAFDPSANCLKEYPYRDMKKKMLSWAFTRGLVLSPSAF***I*GSSHSHDIVARAVAPLKSEFVSRETADRILSNIE********************LSLDDRFKAHEEKMMGRINETINSLFSRLQSELP***********************P*PDSWEAPPLFDSPEEITVSPDLPFSFAPCVKEREPDVPLPS************LDSVGWNRIKYMEAQKEIQAGGIFARLQPNPELDVPHNSLADLLACNDGAFGILCHGLILQRLALADTINMVVSKHPSV*SD**SALSSKESMFKKTSDNLLQYVCGKRAEAIASRRKLLEPAIRVPPRILKDIPPSEEYLFDPKSLAEAMRA***********IPSIPSVNINVDMMSEPAC************HSHDIVARAVAPLKSEFVSRET*DRILSNIE***************EAARDLSLDDRFKAHEEKMMGRINETINSLFSRL***************************************FDSPEEITVSPDLPFSFAPCVKEREPDVPLPSPEAEAHGRSSQKLDSVGWNRIKYMEAQKEIQAGGIFARLQPNPELDVPHNSLADLLACNDGAFGILCHGLILQRLALADTINMVVSKHPSVKSDLISALSSKESMFKKTSDNLLQYVCGKRAEAIASRRKLLEPAIRVPPRILKDIPPSEEYLFDPKSLAEAMRAQSSSSWKKAEVIMGFLSFASFVIPLGKLMFRHIQRLSLRLKKDPLKLCKIPPMALSQMRWWIAALGTPSPIFRRRTQVFVTSDASDSGWGARVDNRMIKGSWTECQKKWHINVKELFAVQMSLEKNLAYVQNKVVLIQSDNLTVVCYIQKQGGTKSINLLRGVEEIFRIATVHNITVQAQYIPGMYNNIADSLSRSQVLPDWHLLPHLTSWIFQNWGRPVIDLFASAGSAVVPRYVSRSARDTQASFIDAFSMDWTFPLAWVFPPPPLMPRVLNHLNSAQGLFIVIAPTWDKVFWYPDLQRRAICAPLSLKNLSSCLVDLSTGRPPPDVVSLRLQAWLVRGG***********

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1144	2.2.26 [Sep-21-2011]
Q89703		652	Putative enzymatic polypr	N/A	N/A	0.107	0.188	0.284	0.0003

>sp\|Q89703\|POL_CSVMV Putative enzymatic polyprotein OS=Cassava vein mosaic virus GN=ORF 3 PE=3 SV=1	Back alignment and function desciption

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 14/137 (10%)

Query: 861 PIFRRRTQVFVTSDASDSGWGARVDN-----------RMIKGSWTECQKKWHINVKELFA 909
           PI +      +  DAS++ +G+ +             R   G++ E ++K+ IN KEL A
Sbjct: 504 PINKEDMNWIIEVDASNNAYGSCLKYKPKNSKIEYLCRYNSGTFKENEQKYDINRKELIA 563

Query: 910 VQMSLEKNLAYVQNKVVLIQSDNLTVVCYIQKQGGTKSINLLRGVEEIFRIATVHNITVQ 969
           V   L+    +      L+++DN  V  +I+     KSI   R ++ +     V+N  +Q
Sbjct: 564 VYQGLQSYSLFTCEGNKLVRTDNSQVYYWIKNDTNKKSIE-FRNIKYLLAKIAVYNFEIQ 622

Query: 970 AQYIPGMYNNIADSLSR 986
              I G  N IAD LSR
Sbjct: 623 L--IDGKTNIIADYLSR 637

Encodes for at least two polypeptides: protease (PR) and reverse transcriptase (RT). The protease processes the polyprotein in cis. Reverse transcriptase is multifunctional enzyme that converts the viral RNA genome into dsDNA in viral cytoplasmic capsids. This enzyme displays a DNA polymerase activity that can copy either DNA or RNA templates, and a ribonuclease H (RNase H) activity that cleaves the RNA strand of RNA-DNA heteroduplexes in a partially processive 3'- to 5'-endonucleasic mode. Neo-synthesized pregenomic RNA (pgRNA) are encapsidated, and reverse-transcribed inside the nucleocapsid. Partial (+)DNA is synthesized from the (-)DNA template and generates the relaxed circular DNA (RC-DNA) genome. After budding and infection, the RC-DNA migrates in the nucleus, and is converted into a plasmid-like covalently closed circular DNA (cccDNA).
Manihot esculenta (taxid: 3983)
EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1144
357630297		500	putative transposon Ty3-I Gag-Pol polypr	0.287	0.658	0.401	3e-63
357609714		421	putative transposon Ty3-I Gag-Pol polypr	0.254	0.691	0.341	5e-48
301619133		707	PREDICTED: transposon Ty3-G Gag-Pol poly	0.300	0.486	0.316	6e-39
301612402		683	PREDICTED: transposon Ty3-I Gag-Pol poly	0.291	0.487	0.319	1e-33
17066696		785	reverse transcriptase/ribonuclease H/put	0.283	0.412	0.332	1e-33
357609981		264	hypothetical protein KGM_00439 [Danaus p	0.181	0.787	0.334	2e-28
384497823		1062	hypothetical protein RO3G_13025 [Rhizopu	0.188	0.203	0.357	3e-28
170819710		1291	reverse transcriptase [Daphnia pulex]	0.303	0.268	0.292	3e-28
170819724		757	reverse transcriptase [Daphnia pulex]	0.309	0.467	0.295	2e-27
327286446		1049	PREDICTED: hypothetical protein LOC10056	0.255	0.278	0.306	2e-27

>gi\|357630297\|gb\|EHJ78517.1\| putative transposon Ty3-I Gag-Pol polyprotein [Danaus plexippus]	Back alignment and taxonomy information

 Score =  250 bits (639), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 140/349 (40%), Positives = 202/349 (57%), Gaps = 20/349 (5%)

Query: 786  AEAMRAQSSSSWKKAEVIMGFLSFASFVIPLGKLMFRHIQRLSLRL-KKDPLKLCKIPPM 844
            A  +  QS  S ++ + IMG L FASFV   G+L  R +Q  S +L K  P +   IP  
Sbjct: 168  ALYLLKQSKWSLRQYQSIMGRLKFASFVTRRGRLHCRTLQYYSRQLPKTHPHRRVSIPQP 227

Query: 845  ALSQMRWWIAALGTPSPIFRRRTQVFVTSDASDSGWGARVDNRMIKGSWTECQKKWHINV 904
               ++ WW+  +G   PI   +    +T++AS++GWGA+++   I  +WT+         
Sbjct: 228  VQPELEWWLEEIGGSMPIQIPQLTNLLTTNASNTGWGAQLNEISISRTWTKP-------- 279

Query: 905  KELFAVQMSLEKNLAYVQNKVVLIQSDNLTVVCYIQKQGGTKSINLLRGVEEIFRIATVH 964
                A+Q+  +     +QN  +L+Q+DN TVV YI K+GGT+S+ LL     +  +    
Sbjct: 280  ----AIQLDQDG----LQNSQILLQTDNRTVVSYINKEGGTQSLKLLEQTRRLLSVLDKV 331

Query: 965  NITVQAQYIPGMYNNIADSLSRSQVLPDWHLLPHLTSWIFQNWGRPVIDLFASAGSAVVP 1024
            N+ + AQYIPG YN   D+LSR +  P+WHL+   T+ IFQ WG P ID FAS  + VV 
Sbjct: 332  NMHLIAQYIPGRYNVEVDALSRQKACPEWHLITEATTKIFQMWGCPEIDFFASKTAHVVR 391

Query: 1025 RYVSRSARDTQASFIDAFSMDWTFPLAWVFPPPPLMPRVLNHLNSAQGLFIVIAPTWDKV 1084
             YV++  +D  A + +AF   W + LAW+FPP  L+PRVL HLN A+GL ++IAP W KV
Sbjct: 392  TYVTKDIQDLDAFYHNAFCRSWDYNLAWLFPPSNLIPRVLAHLNQAKGLHVIIAPKWQKV 451

Query: 1085 FWYPDLQRRAICAPLSLKNLSSCLVDLSTGRPPPDVVSLRLQAWLVRGG 1133
            F   DLQ RA+     + +L+  L+D  TG  PP+V  L+L AWL+ GG
Sbjct: 452  FCQSDLQNRALYL---IPDLNRVLLDTRTGTHPPEVQKLQLGAWLISGG 497

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|357609714\|gb\|EHJ66600.1\| putative transposon Ty3-I Gag-Pol polyprotein [Danaus plexippus]	Back alignment and taxonomy information

>gi\|301619133\|ref\|XP_002938952.1\| PREDICTED: transposon Ty3-G Gag-Pol polyprotein-like [Xenopus (Silurana) tropicalis]	Back alignment and taxonomy information

>gi\|301612402\|ref\|XP_002935710.1\| PREDICTED: transposon Ty3-I Gag-Pol polyprotein-like, partial [Xenopus (Silurana) tropicalis]	Back alignment and taxonomy information

>gi\|17066696\|gb\|AAL35360.1\|AF442732_3 reverse transcriptase/ribonuclease H/putative methyltransferase [Tetraodon nigroviridis]	Back alignment and taxonomy information

>gi\|357609981\|gb\|EHJ66772.1\| hypothetical protein KGM_00439 [Danaus plexippus]	Back alignment and taxonomy information

>gi\|384497823\|gb\|EIE88314.1\| hypothetical protein RO3G_13025 [Rhizopus delemar RA 99-880]	Back alignment and taxonomy information

>gi\|170819710\|gb\|ACB38665.1\| reverse transcriptase [Daphnia pulex]	Back alignment and taxonomy information

>gi\|170819724\|gb\|ACB38666.1\| reverse transcriptase [Daphnia pulex]	Back alignment and taxonomy information

>gi\|327286446\|ref\|XP_003227941.1\| PREDICTED: hypothetical protein LOC100566709 [Anolis carolinensis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1144
DICTYBASE\|DDB_G0267304		833	DDB_G0267304_RTE "DIRS1 ORF3 f	0.222	0.306	0.24	6.9e-06

DICTYBASE\|DDB_G0267304 DDB_G0267304_RTE "DIRS1 ORF3 fragment" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

 Score = 148 (57.2 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
 Identities = 66/275 (24%), Positives = 125/275 (45%)

Query:   720 DLISALSSKE---SMFKKTSDNLLQ--YVCGKRAEAIASRRKLLEPAIRVPPRILKDIPP 774
             DL+   S+KE   S  KKT D L++  +        +   + +    +++    +K + P
Sbjct:    88 DLLIVGSTKEECLSNLKKTMDLLVKLGFKLNLEKSVLELTQSITFLGLQIGSISMKLLVP 147

Query:   775 SEEYLFDPKSLAEAMRAQSSSSWKKAEVIMGFLSFA-SFVIPLGKLMFRHIQRLSLRLKK 833
              E+     K +   ++    S  K A +    ++   +F +   +    H Q L+L    
Sbjct:   148 KEKKKSVIKEIRNFLKLDCCSPRKLAGLKGKLVALKDAFRLSTRRTNKFHSQCLTLA-NG 206

Query:   834 DPLKLCKIPPMALSQMRWWIAAL----GTPSPIFRRRTQVFVTSDASDSGWGARVD--NR 887
             D  +   IP    S++  W+  L    G    +F     V +T+DAS+SG GA +   N+
Sbjct:   207 DWDQSFPIPQDVKSEISHWLTVLNQWNGKEISLFPSYDYV-LTTDASESGAGATLKKGNK 265

Query:   888 MIKG---SWTECQKKWHINVKELFAVQMSLEKNLAYVQNKVVLIQSDNLTVVCYIQKQGG 944
             +IK     W+  Q     N +E+ A+ M+ +     + N  + IQ+DN T + YI +QGG
Sbjct:   266 VIKTWSFQWSTTQSNMSSNRREMLALLMAYQALCQKLNNCKLKIQTDNTTTLSYINRQGG 325

Query:   945 T-KSINLLRGVEEIFRIATVHNITVQAQYIPGMYN 978
               + +++L   E++++      + +  ++IPG +N
Sbjct:   326 QIQDLSVL--FEQLWKQCLKKKVNLIGEHIPGFFN 358

GO:0015074 "DNA integration" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0006278 "RNA-dependent DNA replication" evidence=IEA

GO:0004523 "ribonuclease H activity" evidence=IEA

GO:0003964 "RNA-directed DNA polymerase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		1144
cd09275		120	cd09275, RNase_HI_RT_DIRS1, DIRS1 family of RNase	8e-31
cd09274		121	cd09274, RNase_HI_RT_Ty3, Ty3/Gypsy family of RNas	2e-08
cd06222		123	cd06222, RNase_H, RNase H is an endonuclease that	0.002

>gnl\|CDD\|187699 cd09275, RNase_HI_RT_DIRS1, DIRS1 family of RNase HI in long-term repeat retroelements	Back alignment and domain information

 Score =  117 bits (295), Expect = 8e-31
 Identities = 49/118 (41%), Positives = 72/118 (61%)

Query: 871 VTSDASDSGWGARVDNRMIKGSWTECQKKWHINVKELFAVQMSLEKNLAYVQNKVVLIQS 930
           + +DAS SGWGA +     +G W+  ++  HIN  EL AV ++L+   A + N+ VL++S
Sbjct: 2   LFTDASLSGWGAVLSGSWAQGLWSAEERNKHINFLELLAVLLALQHWGARLSNRKVLVRS 61

Query: 931 DNLTVVCYIQKQGGTKSINLLRGVEEIFRIATVHNITVQAQYIPGMYNNIADSLSRSQ 988
           DN T V YI +QGGT+S  LL    ++       NI ++A++IPG+ N  AD LSR Q
Sbjct: 62  DNTTAVAYINRQGGTRSPELLALARQLVLWCEERNIWLRARHIPGVLNVAADRLSRLQ 119

Ribonuclease H (RNase H) enzymes are divided into two major families, Type 1 and Type 2, based on amino acid sequence similarities and biochemical properties. RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner in the presence of divalent cations. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes. RNase HI has also been observed as adjunct domains to the reverse transcriptase gene in retroviruses, in long-term repeat (LTR)-bearing retrotransposons and non-LTR retrotransposons. RNase HI in LTR retrotransposons perform degradation of the original RNA template, generation of a polypurine tract (the primer for plus-strand DNA synthesis), and final removal of RNA primers from newly synthesized minus and plus strands. The catalytic residues for RNase H enzymatic activity, three aspartatic acids and one glutamatic acid residue (DEDD), are unvaried across all RNase H domains. Phylogenetic patterns of RNase HI of LTR retroelements is classified into five major families, Ty3/Gypsy, Ty1/Copia, Bel/Pao, DIRS1 and the vertebrate retroviruses. The structural features of DIRS1-group elements are different from typical LTR elements. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription. Length = 120

>gnl\|CDD\|187698 cd09274, RNase_HI_RT_Ty3, Ty3/Gypsy family of RNase HI in long-term repeat retroelements	Back alignment and domain information

>gnl\|CDD\|187690 cd06222, RNase_H, RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1144
cd06222		130	RnaseH RNase H (RNase HI) is an endonuclease that	99.15
PF05869		181	Dam: DNA N-6-adenine-methyltransferase (Dam); Inte	99.12
TIGR01712		166	phage_N6A_met phage N-6-adenine-methyltransferase.	99.08
PRK13907		128	rnhA ribonuclease H; Provisional	98.85
PF00075		132	RNase_H: RNase H; InterPro: IPR002156 The RNase H	98.79
.; GO: 0004523 ribonuclease H activity" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00336">PF00336		245	DNA_pol_viral_C: DNA polymerase (viral) C-terminal	98.59
PRK07708		219	hypothetical protein; Validated	98.53
PRK00203		150	rnhA ribonuclease H; Reviewed	98.46
COG0328		154	RnhA Ribonuclease HI [DNA replication, recombinati	98.44
PRK07238		372	bifunctional RNase H/acid phosphatase; Provisional	98.43
PRK06548		161	ribonuclease H; Provisional	98.34
PF13456		87	RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EH	98.2
PRK08719		147	ribonuclease H; Reviewed	98.07
PF05380		159	Peptidase_A17: Pao retrotransposon peptidase ; Int	97.34
PF12237		176	PCIF1_WW: Phosphorylated CTD interacting factor 1	96.92
KOG3752\|consensus		371		96.76
cd03715		210	RT_ZFREV_like RT_ZFREV_like: A subfamily of revers	95.26
cd01645		213	RT_Rtv RT_Rtv: Reverse transcriptases (RTs) from r	94.61
PF06817		70	RVT_thumb: Reverse transcriptase thumb domain; Int	93.52
cd01647		177	RT_LTR RT_LTR: Reverse transcriptases (RTs) from r	91.43
cd03714		119	RT_DIRS1 RT_DIRS1: Reverse transcriptases (RTs) oc	89.93
cd01644		213	RT_pepA17 RT_pepA17: Reverse transcriptase (RTs) i	89.6

>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner	Back alignment and domain information

Probab=99.15  E-value=1.1e-10  Score=103.38  Aligned_cols=116  Identities=21%  Similarity=0.166  Sum_probs=89.2

Q ss_pred             EEEecCCCC------ceEEEEeeccccccccccc--cccccchhhHHHHHHHHHHhhcccCCcEEEEEeCChhHHHHHHh
Q psy3199         870 FVTSDASDS------GWGARVDNRMIKGSWTECQ--KKWHINVKELFAVQMSLEKNLAYVQNKVVLIQSDNLTVVCYIQK  941 (1144)
Q Consensus       870 iLyTDASdS------GIGAVL~Qe~aSgtWSeaE--rnySIneRELLAVVlALe~fr~yL~Gk~flVrTDNKTAVSyLnK  941 (1144)
                      .++||||..      |+|+++.+......|....  ...+++..|+.|++.||+... .+..+.+.|+|||+.++..+++
T Consensus         1 ~~~~Dgs~~~~~~~~g~g~v~~~~~~~~~~~~~~~~~~~s~~~aEl~al~~al~~~~-~~~~~~i~i~~Ds~~~~~~~~~   79 (130)
T cd06222           1 VIYTDGSCRGNPGPAGAGVVLRDPGGEVLLSGGLLGGNTTNNRAELLALIEALELAL-ELGGKKVNIYTDSQYVINALTG   79 (130)
T ss_pred             CEEecccCCCCCCceEEEEEEEeCCCeEEEeccccCCCCcHHHHHHHHHHHHHHHHH-hCCCceEEEEECHHHHHHHhhc
Confidence            379999986      9999998755444443332  477999999999999999866 5677899999999999999987


Q ss_pred             cCCCCChhhhhHHHHHHHHHHhcceeEEEEEecC----CcccCCCcCCCC
Q psy3199         942 QGGTKSINLLRGVEEIFRIATVHNITVQAQYIPG----MYNNIADSLSRS  987 (1144)
Q Consensus       942 qgSkrSp~LnrLARrI~~wLee~nIdftaeHIPG----keNvVADALSR~  987 (1144)
                      ........+..+.+.+..+. .....+++.||||    ..|..||.|+|.
T Consensus        80 ~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~v~~h~~~~~n~~ad~la~~  128 (130)
T cd06222          80 WYEGKPVKNVDLWQRLLALL-KRFHKVRFEWVPGHSGIEGNERADALAKE  128 (130)
T ss_pred             cccCCChhhHHHHHHHHHHH-hCCCeEEEEEcCCCCCCcchHHHHHHHHh
Confidence            64323445556666666655 2344688999999    999999999875

One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.

>PF05869 Dam: DNA N-6-adenine-methyltransferase (Dam); InterPro: IPR008593 This family consists of several bacterial and phage DNA N-6-adenine-methyltransferase (Dam) like sequences []	Back alignment and domain information

>TIGR01712 phage_N6A_met phage N-6-adenine-methyltransferase	Back alignment and domain information

>PRK13907 rnhA ribonuclease H; Provisional	Back alignment and domain information

>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site	Back alignment and domain information

>PF00336 DNA_pol_viral_C: DNA polymerase (viral) C-terminal domain; InterPro: IPR001462 This domain is at the C terminus of hepatitis B-type viruses P proteins and represents a functional domain that controls the RNase H activities of the protein	Back alignment and domain information

>PRK07708 hypothetical protein; Validated	Back alignment and domain information

>PRK00203 rnhA ribonuclease H; Reviewed	Back alignment and domain information

>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK07238 bifunctional RNase H/acid phosphatase; Provisional	Back alignment and domain information

>PRK06548 ribonuclease H; Provisional	Back alignment and domain information

>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B	Back alignment and domain information

>PRK08719 ribonuclease H; Reviewed	Back alignment and domain information

>PF05380 Peptidase_A17: Pao retrotransposon peptidase ; InterPro: IPR008042 This signature identifies members of the Pao retrotransposon family	Back alignment and domain information

>PF12237 PCIF1_WW: Phosphorylated CTD interacting factor 1 WW domain; InterPro: IPR022035 This domain is found in bacteria and eukaryotes, and is approximately 180 amino acids in length	Back alignment and domain information

>KOG3752\|consensus	Back alignment and domain information

>cd03715 RT_ZFREV_like RT_ZFREV_like: A subfamily of reverse transcriptases (RTs) found in sequences similar to the intact endogenous retrovirus ZFERV from zebrafish and to Moloney murine leukemia virus RT	Back alignment and domain information

>cd01645 RT_Rtv RT_Rtv: Reverse transcriptases (RTs) from retroviruses (Rtvs)	Back alignment and domain information

>PF06817 RVT_thumb: Reverse transcriptase thumb domain; InterPro: IPR010661 This domain is known as the thumb domain	Back alignment and domain information

>cd01647 RT_LTR RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template	Back alignment and domain information

>cd03714 RT_DIRS1 RT_DIRS1: Reverse transcriptases (RTs) occurring in the DIRS1 group of retransposons	Back alignment and domain information

>cd01644 RT_pepA17 RT_pepA17: Reverse transcriptase (RTs) in retrotransposons	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1144
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 69.5 bits (169), Expect = 5e-12
 Identities = 75/518 (14%), Positives = 127/518 (24%), Gaps = 160/518 (30%)

Query: 27  KDAARKFLPDGWRDWTLVNSIDLEMEVDSSTLNKLRFALPTLE--IVRAFDPSANCLKEY 84
           KD    F      ++   +  D+   + S                 +R F      L   
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW----TLLSK 74

Query: 85  PYRDMKKKMLSWAFTRGLVLSP------SAFSKQIRGSS-------HSHDIVARAVAPLK 131
               ++K      F    VL        S    + R  S          D +        
Sbjct: 75  QEEMVQK------FVEE-VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 132 SEFVSR-ETADRI---LSNIEKPASRSSSVAMESTG------EAARDLSLDDRFKAHEEK 181
              VSR +   ++   L  + +PA       +  +G      +      +  +    + K
Sbjct: 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM---DFK 183

Query: 182 M----MGRINET------INSLFSRLQSEL-----PAFNREESSHSETEE-------SEF 219
           +    +   N        +  L  ++          + N +   HS   E         +
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 220 PE-----RDVSPPPDSWEAPPLFDSPEEITVSPDLPFSFAPC---VKEREPDVPLPSPEA 271
                   +V     +W A   F+             S   C   +  R   V       
Sbjct: 244 ENCLLVLLNVQNA-KAWNA---FN------------LS---CKILLTTRFKQV------- 277

Query: 272 EAHGRSSQKLDSVGWNRIKYMEAQKEIQAGGIFARLQPNPELDVPHNSLADLLACNDGAF 331
                     D +      ++              L  +     P      LL       
Sbjct: 278 ---------TDFLSAATTTHI-------------SLDHHSMTLTPDEVK-SLLL------ 308

Query: 332 GILCHGLILQRL-ALADTIN-MVVSKHPSVKSDLISALSSKESMFKKTSDNLLQYVCGKR 389
                    Q L     T N   +S        +I+           T DN     C K 
Sbjct: 309 --KYLDCRPQDLPREVLTTNPRRLS--------IIAESIRD---GLATWDNWKHVNCDKL 355

Query: 390 AEAIASRRKLLEPA---------------IRVPPRILKDI-PPSEEYLFDPKSLAEAMRA 433
              I S   +LEPA                 +P  +L  I     +   D   +   +  
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS--DVMVVVNKLHK 413

Query: 434 QSSSGKNGKQRIPSIPSVNINVDMMSEPACKGKQHRKI 471
            S   K  K+   SIPS  I +++  +   +   HR I
Sbjct: 414 YSLVEKQPKESTISIPS--IYLELKVKLENEYALHRSI 449

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1144
1rw3_A		455	POL polyprotein; RNA and DNA dependent DNA polymer	99.91
2zd1_A		557	Reverse transcriptase/ribonuclease H; P51/P66, het	99.87
2zd1_B		428	P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleosid	99.86
1mu2_A		555	HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polym	99.84
3u3g_D		140	Ribonuclease H, RNAse H1; hydrolase, cleave the RN	99.01
3hst_B		141	Protein RV2228C/MT2287; ribonuclease H1, RV2228C N	98.99
2ehg_A		149	Ribonuclease HI; RNAse HI, hyperthermophilic archa	98.87
3h08_A		146	RNH (ribonuclease H); RNAse H, 3D-structure, endon	98.72
2e4l_A		158	Ribonuclease HI, RNAse HI; hydrolase, endoribonucl	98.68
2qkb_A		154	Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hy	98.63
1jl1_A		155	Ribonuclease HI; RNAse HI, protein stability, ther	98.63
3qio_A		150	GAG-POL polyprotein; RNAse H, inhibitor, nuclease,	98.6
3p1g_A		165	Xenotropic murine leukemia virus-related virus (X	98.58
1ril_A		166	Ribonuclease H; hydrolase(endoribonuclease); 2.80A	98.57
2lsn_A		165	Reverse transcriptase; RNAse H, viral protein; NMR	98.42
2kq2_A		147	Ribonuclease H-related protein; PSI, NESG, protein	98.26
1zbf_A		142	Ribonuclease H-related protein; RNAse H, RNA/DNA h	97.95
4htu_A		134	Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine,	97.66
3fsi_A		255	RT, reverse transcriptase domain; transferase/DNA	96.55

>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2	Back alignment and structure

Probab=99.91  E-value=7.6e-28  Score=267.47  Aligned_cols=246  Identities=12%  Similarity=0.071  Sum_probs=189.8

Q ss_pred             CCccccccchhhHhhhhHHHHHHHHh----cCCCccccchhhhhccccccccccccchhhhhccchhHHHHhhhhccCcc
Q psy3199         686 DGAFGILCHGLILQRLALADTINMVV----SKHPSVKSDLISALSSKESMFKKTSDNLLQYVCGKRAEAIASRRKLLEPA  761 (1144)
Q Consensus       686 ~~~fg~~~~~~ifqrl~l~d~~~e~~----~~~~~V~~Dli~~~s~~e~~~~~~~~n~L~~lc~~~~~~va~k~~ll~pT  761 (1144)
                      -=.||++|+|.+||| .+..++++..    +....||.|||.+.|+.+..|..+...++..+.........+||.+..++
T Consensus       168 ~mpfGl~naP~~fq~-~m~~~l~~~~~~~~~~~v~~YvDDili~s~~~~e~~~~l~~v~~~l~~~gl~l~~~K~~f~~~~  246 (455)
T 1rw3_A          168 RLPQGFKNSPTLFDE-ALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKAQICQKQ  246 (455)
T ss_dssp             BCCSSCTTHHHHHHH-HHHHHHHHHHHTCTTCEEEEETTEEEEEESSHHHHHHHHHHHHHHHHHHTCCBCGGGCCCSBSS
T ss_pred             ecCCCCCCcHHHHHH-HHHHHHHHhhhhCCCceEEEEcCCEEEecCCHHHHHHHHHHHHHHHHHcCCccCccchhhhccc
Confidence            336999999999999 8999999985    66788999999999999999998888888877666666678899998888


Q ss_pred             cccCcccccCCCCCchhhcChHHHHHHHhhCCCCCHHHHHHHhcccchhhhcCChhHHHHHHHHHHHHhcccCCCccccC
Q psy3199         762 IRVPPRILKDIPPSEEYLFDPKSLAEAMRAQSSSSWKKAEVIMGFLSFASFVIPLGKLMFRHIQRLSLRLKKDPLKLCKI  841 (1144)
Q Consensus       762 VRLP~rI~krI~QiEefLaDpKkLLEa~rs~~~~SvKELQSFLGlLNhVS~VIP~GR~YyRrLyr~lskLrK~p~a~~rL  841 (1144)
                      +...+.++..    .+.-.++.++........+.|++++|+|+|.+|+++.+++......+.|++.   ++|  ...+.|
T Consensus       247 ~~fLG~~i~~----~gi~~~~~kv~~i~~~~~p~t~k~l~~flG~~~y~r~fi~~~~~~~~pL~~l---lkk--~~~~~W  317 (455)
T 1rw3_A          247 VKYLGYLLKE----GQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPL---TKT--GTLFNW  317 (455)
T ss_dssp             CEETTEEESS----SEECCCTTCCCCCCCCCTTTHHHHHHHTTTTTCCCSSCCCCCGGGCCTTCC-------------CC
T ss_pred             eeEeeeeccC----CeeEEChhHhhhhccCCCCCCHHHhhhhcccchHHHHHHhhhhhhcccHHHH---hcC--CCCcCc
Confidence            9988874421    1111111111111233456899999999999998888777644444433332   222  357899


Q ss_pred             CHHHHHHHHHHHHHhCCCCccc--cCCccEEEEecCCCCceEEEEeec---------cccccccccccccccchhhHHHH
Q psy3199         842 PPMALSQMRWWIAALGTPSPIF--RRRTQVFVTSDASDSGWGARVDNR---------MIKGSWTECQKKWHINVKELFAV  910 (1144)
Q Consensus       842 SeEAreDLeWWKe~LsS~~pI~--pP~~dfiLyTDASdSGIGAVL~Qe---------~aSgtWSeaErnySIneRELLAV  910 (1144)
                      ++++.++|+.+++.|.+...+.  .+..++.|+||||+.|+||||.|.         +.|++++.+|.+|++.++|++||
T Consensus       318 ~~~~~~af~~lK~~l~~~pvL~~p~~~~~~~l~~DAS~~~~gavL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi  397 (455)
T 1rw3_A          318 GPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAI  397 (455)
T ss_dssp             CCCCSSSCCHHHHHTCSSCCSCCSSSCCTTSCEEEEEECSSSBEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhcCcccccCCCCCcEEEEEeccCCcceeEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHH
Confidence            9999999999999997643333  236789999999999999999885         35788999999999999999999


Q ss_pred             HHHHHHhhcccCCcEEEEEeCChhHHHHHHhc
Q psy3199         911 QMSLEKNLAYVQNKVVLIQSDNLTVVCYIQKQ  942 (1144)
Q Consensus       911 VlALe~fr~yL~Gk~flVrTDNKTAVSyLnKq  942 (1144)
                      ++|+++|++|+.|+.|+|+|||+ +++++++.
T Consensus       398 ~~a~~~~~~yl~g~~~~v~tDh~-~~~~l~~~  428 (455)
T 1rw3_A          398 AVLTKDAGKLTMGQPLVIKAPHA-VEALVKQP  428 (455)
T ss_dssp             HHHHHHHHGGGCSSCEEEECSSC-TTTTSSST
T ss_pred             HHHHHHHHHHcCCCcEEEEecCh-HHHHhCCC
Confidence            99999999999999999999998 77887753

PyMOL of 1rw3

>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...	Back alignment and structure

>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...	Back alignment and structure

>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B	Back alignment and structure

>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}	Back alignment and structure

>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}	Back alignment and structure

>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A	Back alignment and structure

>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}	Back alignment and structure

>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A	Back alignment and structure

>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*	Back alignment and structure

>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...	Back alignment and structure

>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A	Back alignment and structure

>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A	Back alignment and structure

>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A	Back alignment and structure

>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}	Back alignment and structure

>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A	Back alignment and structure

>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*	Back alignment and structure

>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A	Back alignment and structure

>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1144
d2zd1b1		424	HIV-1 reverse transcriptase {Human immunodeficienc	99.63
d1mu2a2		427	HIV-1 reverse transcriptase {Human immunodeficienc	99.37
d1rila_		147	RNase H (RNase HI) {Thermus thermophilus [TaxId: 2	98.33
d1mu2a1		126	HIV RNase H (Domain of reverse transcriptase) {Hum	98.28
d1jl1a_		152	RNase H (RNase HI) {Escherichia coli [TaxId: 562]}	98.28
d1s1ta1		110	HIV RNase H (Domain of reverse transcriptase) {Hum	98.11
d1zbfa1		132	BH0863-like Ribonuclease H {Bacillus halodurans [T	98.01
d1ztwa1		255	MMLV reverse transcriptase {Moloney murine leukemi	95.65
d1hara_		216	HIV-1 reverse transcriptase {Human immunodeficienc	95.39

>d2zd1b1 e.8.1.2 (B:5-428) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]}	Back information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: Reverse transcriptase
domain: HIV-1 reverse transcriptase
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=99.63  E-value=1.6e-16  Score=176.10  Aligned_cols=263  Identities=13%  Similarity=0.037  Sum_probs=169.3

Q ss_pred             CccccccchhhHhhhhHHHHHHHHhcC----CCccccchhhhhccc-cccccccccchhhhhccchhHHHHhhhhccCcc
Q psy3199         687 GAFGILCHGLILQRLALADTINMVVSK----HPSVKSDLISALSSK-ESMFKKTSDNLLQYVCGKRAEAIASRRKLLEPA  761 (1144)
Q Consensus       687 ~~fg~~~~~~ifqrl~l~d~~~e~~~~----~~~V~~Dli~~~s~~-e~~~~~~~~n~L~~lc~~~~~~va~k~~ll~pT  761 (1144)
                      =-||++|+|.|||| .++++++++.++    ++++|.|||.+.|+. ...|..+...+|+.+-...... ..||.++.++
T Consensus       145 lPfGl~nsPa~Fqr-~m~~il~~~~~~~~~~~i~~Y~DDIlI~S~~~~eeH~~~l~~vl~~L~~~gl~l-~~Kk~f~~~~  222 (424)
T d2zd1b1         145 LPQGWKGSPAIFQS-SMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTT-PDKKHQKEPP  222 (424)
T ss_dssp             CCTTCTHHHHHHHH-HHHHHHHHHHHHCTTCEEEEETTEEEEEECSCHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred             cCCcccCcHHHHHH-HHHHHcccccccCcceeEEeccceEEEecCchhHHHHHHHHHHHHHHHHhCCcc-chhhhhhhcc
Confidence            35899999999999 999999999876    478999999998875 4568777778888775555443 4677788889


Q ss_pred             cccCcccccCCCCCchhhcChHHHHHHHhhCCCCCHHHHHHHhcccchhhhcCChhHHHHHHHHHHHHhcccCCCccccC
Q psy3199         762 IRVPPRILKDIPPSEEYLFDPKSLAEAMRAQSSSSWKKAEVIMGFLSFASFVIPLGKLMFRHIQRLSLRLKKDPLKLCKI  841 (1144)
Q Consensus       762 VRLP~rI~krI~QiEefLaDpKkLLEa~rs~~~~SvKELQSFLGlLNhVS~VIP~GR~YyRrLyr~lskLrK~p~a~~rL  841 (1144)
                      |..++.++.    ..+.-.++.+    +....+.|++|||+|||.+||++.+||...  ++.|.+.+... ++....+.|
T Consensus       223 v~~LG~~is----~~gi~~~~~k----l~~~~p~t~kelq~fLG~~n~~r~fIp~~s--~~~L~~ll~~~-~~~~~~~~W  291 (424)
T d2zd1b1         223 FLWMGYELH----PDKWTVQPIV----LPEKDSWTVNDIQKLVGKLNWASQIYPGIK--VRQLSKLLRGT-KALTEVIPL  291 (424)
T ss_dssp             CTTCCEEEC----GGGCCCCCCC----CCCCSSEEHHHHHHHHHHHHHHTTTCTTCC--CHHHHHTTCSC-CCTTCEECC
T ss_pred             cccceeeec----CCcEeCCHHH----hccccCCCHHHHHHHHHHHHHHHHhcccch--HHHHHHHhhhh-ccCCCCccC
Confidence            999988431    1111111111    123456799999999999998888887643  23444433222 234567999


Q ss_pred             CHHHHHHHHHHHHHhCCCCcc--ccCCccEEEEecCCCCceEEEEeecccc-----cc---ccccccccccchhhHHHHH
Q psy3199         842 PPMALSQMRWWIAALGTPSPI--FRRRTQVFVTSDASDSGWGARVDNRMIK-----GS---WTECQKKWHINVKELFAVQ  911 (1144)
Q Consensus       842 SeEAreDLeWWKe~LsS~~pI--~pP~~dfiLyTDASdSGIGAVL~Qe~aS-----gt---WSeaErnySIneRELLAVV  911 (1144)
                      +++++.+|+..|+.|.+...+  ..|..++.++||||+.|.|++..+....     +.   .+.++.| .+-.+++++..
T Consensus       292 t~e~~~af~~lK~~l~~~p~L~~~Dp~kp~~~~~das~~g~~~~~~~q~~~~~~~~~~~~~~~~~~~n-~~~~~~~~~~k  370 (424)
T d2zd1b1         292 TEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTN-DVKQLTEAVQK  370 (424)
T ss_dssp             CHHHHHHHHHHHHHTTSCCTTCCCCTTSCCEEEEEEEETTEEEEEEESSTTCEEEEEEEECCSSCTTC-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcccccccCCCCCCCEEEEEecCCCCceEEEEEcCCCcccceEEeccccccccC-HHHHHHHHHHH
Confidence            999999999999999864332  2467899999999988776654332111     11   2223334 44455666777


Q ss_pred             HHHHHhhcccCCcEEEEEeCChhHHHHHHhcCCCCChhhhhHHHHHHHHHHhcceeEEEEEecCCcccCCCcCCCCC
Q psy3199         912 MSLEKNLAYVQNKVVLIQSDNLTVVCYIQKQGGTKSINLLRGVEEIFRIATVHNITVQAQYIPGMYNNIADSLSRSQ  988 (1144)
Q Consensus       912 lALe~fr~yL~Gk~flVrTDNKTAVSyLnKqgSkrSp~LnrLARrI~~wLee~nIdftaeHIPGkeNvVADALSR~~  988 (1144)
                      .+.+.+.+..++-.+.|-.-                     ...|.+.| .++   ..+.|||.-+++-++.|+|..
T Consensus       371 ~~~e~~~~~g~~p~~~~p~~---------------------~~~w~~~~-~~~---~~~~~~p~~~~~~~~~l~~~~  422 (424)
T d2zd1b1         371 ITTESIVIWGKTPKFKLPIQ---------------------KETWETWW-TEY---WQATWIPEWEFVNTPPLVKLW  422 (424)
T ss_dssp             HHHHHHHHHSSCCEEEESSC---------------------HHHHHHHH-HHH---CCCSSCCEEEECCSCCTTTGG
T ss_pred             HHHHHHHHhCcCccEECCcc---------------------HHHHHHHH-Hhh---cccccCCCceeccCcHHHHHh
Confidence            77777777666655544220                     11222223 232   345899999999999999963

PyMOL of d2zd1b1

>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}	Back information, alignment and structure

>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}	Back information, alignment and structure

>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]}	Back information, alignment and structure

>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure

>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}	Back information, alignment and structure

>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]}	Back information, alignment and structure