Psyllid ID: psy3272

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
Protein Sequence
MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE
Secondary Structure (PSIPRED)
ccEEEEEEccEEEcccccccEEEEEEccEEEEEEEcccccccEEEEEEEEEccEEEEEEEEEEEEcccEEEEEEcccEEEEEEccccccccEEEEEEEEccccEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccEcccccccEEEEEEcccEEEEEEEEccHHccccEEEEEEccccccEEEEEEEEEccccEEEccccccEEEEEEEccHcccccEEEEEEccccccEEEEEEEEcc
Coil and Loop (DISEMBL)
mgmmswyqdtfliepsvsdrrlmetrgnkhtltiknvqstdfgnyscvadnnlgraKKYMELSVSVSDrrlmetrgnkhtltiknvqstdfgnyscvadnnlgrakKYMELSELE
Flexible Loop (DISEMBL)
MGMMSWYQDTFLIEPSVSDRRLMETRGNKhtltiknvqstdfgNYSCVADNNLGRAKKYMElsvsvsdrrlmetrgnkhtltiknvqstdfgNYSCVADNNLGRAKKYMELSELE
Low Complexity Region (SEG)
MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE
Disordered region (IsUnstruct)
*****WYQDTFLIEP*************KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV***********KHTLTIKNVQSTDFGNYSCVADNNL*************
Disordered Region (DISOPRED)
MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE
Disordered Region (DISEMBL)
MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE
Disordered Region (DISPRO)
MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	115	2.2.26 [Sep-21-2011]
O01761	8081	Muscle M-line assembly pr	no	N/A	0.939	0.013	0.235	2e-05
Q96RW7	5635	Hemicentin-1 OS=Homo sapi	yes	N/A	0.904	0.018	0.264	8e-05
Q8WZ42	34350	Titin OS=Homo sapiens GN=	no	N/A	0.791	0.002	0.274	0.0001
Q61006	868	Muscle, skeletal receptor	no	N/A	0.930	0.123	0.285	0.0002
A2ASS6	35213	Titin OS=Mus musculus GN=	no	N/A	0.791	0.002	0.267	0.0003
Q62838	868	Muscle, skeletal receptor	no	N/A	0.930	0.123	0.285	0.0005
O89026	1612	Roundabout homolog 1 OS=M	no	N/A	0.930	0.066	0.267	0.0007
Q8NDA2	5065	Hemicentin-2 OS=Homo sapi	no	N/A	0.939	0.021	0.263	0.0008

>sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 OS=Caenorhabditis elegans GN=unc-89 PE=1 SV=3

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 57/157 (36%), Gaps = 49/157 (31%)

Query: 4    MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
            + W++D   I    S     +     HTLTIK  +  D G Y+C A N  G AK    ++
Sbjct: 3513 VEWFKDDKPINIDNSHIFAKDEGSGHHTLTIKQARGEDVGVYTCKATNEAGEAKTTANMA 3572

Query: 64   V-----------------------------------------------SVSDRRLMETRG 76
            V                                               ++ ++ ++E +G
Sbjct: 3573 VQEEIEAPLFVQGLKPYEVEQGKPAELVVRVEGKPEPEVKWFKDGVPIAIDNQHVIEKKG 3632

Query: 77   NK--HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
                HTL IK+  + DFG Y+C A N  G+ +   EL
Sbjct: 3633 ENGSHTLVIKDTNNADFGKYTCQATNKAGKDETVGEL 3669

Structural component of the muscle M-line. Myofilament lattice assembly begins with positional cues laid down in the basement membrane and muscle cell membrane. UNC-89 responds to these signals, localizes, and then participates in assembling an M-line.
Caenorhabditis elegans (taxid: 6239)

>sp|Q96RW7|HMCN1_HUMAN Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 53/151 (35%), Gaps = 47/151 (31%)

Query: 5    SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            SW +D    +P + D    +   N   L I N Q TD G Y CVA+N  G AKKY  L+V
Sbjct: 2905 SWQKDG---QPLLEDDH-HKFLSNGRILQILNTQITDIGRYVCVAENTAGSAKKYFNLNV 2960

Query: 65   SVSDRRLMETRGN-------------------------------------------KHTL 81
             V    +     N                                             TL
Sbjct: 2961 HVPPSVIGPKSENLTVVVNNFISLTCEVSGFPPPDLSWLKNEQPIKLNTNTLIVPGGRTL 3020

Query: 82   TIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
             I   + +D G Y+C+A N  G +KK   L+
Sbjct: 3021 QIIRAKVSDGGEYTCIAINQAGESKKKFSLT 3051

Homo sapiens (taxid: 9606)

>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 51/131 (38%), Gaps = 40/131 (30%)

Query: 4    MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK----- 58
            +SWY+ T  +EPS  D+  +   G++HTL +KN Q  D GNY  V   ++  AK      
Sbjct: 9615 LSWYKGTEKLEPS--DKFEISIDGDRHTLRVKNCQLKDQGNYRLVCGPHIASAKLTVIEP 9672

Query: 59   -----------------YMELSVSVSD----------------RRLMETRGNKHTLTIKN 85
                              M    SV +                R   E     H LTI +
Sbjct: 9673 AWERHLQDVTLKEGQTCTMTCQFSVPNVKSEWFRNGRILKPQGRHKTEVEHKVHKLTIAD 9732

Query: 86   VQSTDFGNYSC 96
            V++ D G Y+C
Sbjct: 9733 VRAEDQGQYTC 9743

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q61006|MUSK_MOUSE Muscle, skeletal receptor tyrosine-protein kinase OS=Mus musculus GN=Musk PE=1 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 47/154 (30%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA------- 56
           +SW ++  LI+  + D R    R N   LTI +V+ +D G Y C+A+N +G A       
Sbjct: 59  ISWTRNKILIK--LFDTR-YSIRENGQLLTILSVEDSDDGIYCCIANNGVGGAVESCGAL 115

Query: 57  --KKYMELSVSVSDRRLME---------TRGNKH------------------------TL 81
             K   +++    + +++E         T GN                          +L
Sbjct: 116 QVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDNALRENSRIAVLESGSL 175

Query: 82  TIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
            I NVQ  D G Y CVA N+LG A  Y +L +LE
Sbjct: 176 RIHNVQKEDAGQYRCVAKNSLGTA--YSKLVKLE 207

Receptor tyrosine kinase which plays a central role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between the motor neuron and the skeletal muscle. Recruitment of AGRIN by LRP4 to the MUSK signaling complex induces phosphorylation and activation of MUSK, the kinase of the complex. The activation of MUSK in myotubes regulates the formation of NMJs through the regulation of different processes including the specific expression of genes in subsynaptic nuclei, the reorganization of the actin cytoskeleton and the clustering of the acetylcholine receptors (AChR) in the postsynaptic membrane. May regulate AChR phosphorylation and clustering through activation of ABL1 and Src family kinases which in turn regulate MUSK. DVL1 and PAK1 that form a ternary complex with MUSK are also important for MUSK-dependent regulation of AChR clustering. May positively regulate Rho family GTPases through FNTA. Mediates the phosphorylation of FNTA which promotes prenylation, recruitment to membranes and ativation of RAC1 a regulator of the actin cytoskeleton and of gene expression. Other effectors of the MUSK signaling include DNAJA3 which functions downstream of MUSK. May also play a role within the central nervous system by mediating cholinergic responses, synaptic plasticity and memory formation.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1

 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 51/131 (38%), Gaps = 40/131 (30%)

Query: 4    MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK----- 58
            +SWY+ T  +EPS  ++  +   G++HTL +KN Q  D GNY  V   ++  AK      
Sbjct: 9576 LSWYKGTEKLEPS--NKYEISIDGDRHTLRVKNCQPKDQGNYRLVCGPHIASAKLTVIEP 9633

Query: 59   -----------------YMELSVSVSD----------------RRLMETRGNKHTLTIKN 85
                              M    SV +                R   E     H LTI +
Sbjct: 9634 AWERHLQDVTLKEGQTCTMTCQFSVPNVKSEWFRNGRVLKPQGRVKTEVEHKVHKLTIAD 9693

Query: 86   VQSTDFGNYSC 96
            V++ D G Y+C
Sbjct: 9694 VRAEDQGQYTC 9704

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q62838|MUSK_RAT Muscle, skeletal receptor tyrosine protein kinase OS=Rattus norvegicus GN=Musk PE=1 SV=1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 47/154 (30%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA------- 56
           +SW ++  LI+  + D R    R N   LTI +V+ +D G Y C A+N +G A       
Sbjct: 59  ISWTRNKILIK--LFDTR-YSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGAL 115

Query: 57  --KKYMELSVSVSDRRLME---------TRGNKH------------------------TL 81
             K   +++    + +++E         T GN                          +L
Sbjct: 116 QVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSL 175

Query: 82  TIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
            I NVQ  D G Y CVA N+LG A  Y +L +LE
Sbjct: 176 RIHNVQKEDAGQYRCVAKNSLGTA--YSKLVKLE 207

Receptor tyrosine kinase which plays a central role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between the motor neuron and the skeletal muscle. Recruitment of AGRIN by LRP4 to the MUSK signaling complex induces phosphorylation and activation of MUSK, the kinase of the complex. The activation of MUSK in myotubes regulates the formation of NMJs through the regulation of different processes including the specific expression of genes in subsynaptic nuclei, the reorganization of the actin cytoskeleton and the clustering of the acetylcholine receptors (AChR) in the postsynaptic membrane. May regulate AChR phosphorylation and clustering through activation of ABL1 and Src family kinases which in turn regulate MUSK. DVL1 and PAK1 that form a ternary complex with MUSK are also important for MUSK-dependent regulation of AChR clustering. May positively regulate Rho family GTPases through FNTA. Mediates the phosphorylation of FNTA which promotes prenylation, recruitment to membranes and ativation of RAC1 a regulator of the actin cytoskeleton and of gene expression. Other effectors of the MUSK signaling include DNAJA3 which functions downstream of MUSK. May also play a role within the central nervous system by mediating cholinergic responses, synaptic plasticity and memory formation.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|O89026|ROBO1_MOUSE Roundabout homolog 1 OS=Mus musculus GN=Robo1 PE=1 SV=1

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 62/153 (40%), Gaps = 46/153 (30%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR-------- 55
           +SW +D   ++    D R+   RG K  L I   + +D G Y CV  N +G         
Sbjct: 163 ISWKKDGSPLDDK--DERIT-IRGGK--LMITYTRKSDAGKYVCVGTNMVGERESEVAEL 217

Query: 56  --------AKKYMELSVSVSDRRLM--ETRGN-----------------------KHTLT 82
                    K+   L+V+V D      E RG+                        HTL 
Sbjct: 218 TVLERPSFVKRPSNLAVTVDDSAEFKCEARGDPVPTVRWRKDDGELPKSRYEIRDDHTLK 277

Query: 83  IKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
           I+ V + D G+Y+CVA+N +G+A+    L+  E
Sbjct: 278 IRKVTAGDMGSYTCVAENMVGKAEASATLTVQE 310

Receptor for SLIT1 and SLIT2 which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development. In axon growth cones, the silencing of the attractive effect of NTN1 by SLIT2 may require the formation of a ROBO1-DCC complex (By similarity). May be required for lung development.

Mus musculus (taxid: 10090)

>sp|Q8NDA2|HMCN2_HUMAN Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=2

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 44/152 (28%)

Query: 4    MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
            +SW +D   +   +S R L+   G+ HTL I  VQ  D G ++CVA +  G A +   L 
Sbjct: 3345 VSWLKDGLPL--PLSQRTLLH--GSGHTLRISKVQLADAGIFTCVAASPAGVADRNFTLQ 3400

Query: 64   VSV----------SDRRLM---------ETRG---------------------NKHTLTI 83
            V V          +D  ++         E RG                        +L +
Sbjct: 3401 VQVPPVLEPVEFQNDVVVVRGSLVELPCEARGVPLPLVSWMKDGEPLLSQSLEQGPSLQL 3460

Query: 84   KNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
            + V + D G YSCVA +  G A+++ +L+ +E
Sbjct: 3461 EAVGAGDSGTYSCVAVSEAGEARRHFQLTVME 3492

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
242005474	369	lachesin precursor, putative [Pediculus	0.486	0.151	0.775	5e-19
170060461	305	conserved hypothetical protein [Culex qu	0.504	0.190	0.683	3e-18
198450742	469	GA26736 [Drosophila pseudoobscura pseudo	0.530	0.130	0.634	6e-18
195166338	263	GL27117 [Drosophila persimilis] gi|19410	0.504	0.220	0.666	9e-18
312379024	545	hypothetical protein AND_09222 [Anophele	0.486	0.102	0.706	1e-17
195443868	492	GK11479 [Drosophila willistoni] gi|19416	0.530	0.123	0.634	1e-17
195054068	409	GH22352 [Drosophila grimshawi] gi|193895	0.530	0.149	0.619	2e-17
157103416	484	hypothetical protein AaeL_AAEL000536 [Ae	0.504	0.119	0.666	3e-17
195399512	476	GJ14353 [Drosophila virilis] gi|19414192	0.530	0.128	0.619	3e-17
195113691	526	GI21998 [Drosophila mojavensis] gi|19391	0.530	0.115	0.619	4e-17

>gi|242005474|ref|XP_002423590.1| lachesin precursor, putative [Pediculus humanus corporis] gi|212506738|gb|EEB10852.1| lachesin precursor, putative [Pediculus humanus corporis]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/58 (77%), Positives = 52/58 (89%), Gaps = 2/58 (3%)

Query: 6   WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
           WYQD+F ++   S+RR METRGNKHTLTI+NVQ +DFGNYSCVADN+LGRAKKYMELS
Sbjct: 175 WYQDSFQLD--QSERRTMETRGNKHTLTIRNVQGSDFGNYSCVADNSLGRAKKYMELS 230

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170060461|ref|XP_001865813.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167878927|gb|EDS42310.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 52/60 (86%), Gaps = 2/60 (3%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
           +SWYQ++F I+P+  DRR M +RGN+HTLTI++VQ  DFGNYSCVADN LGR+KKYME+S
Sbjct: 74  VSWYQNSFPIQPT--DRRTMSSRGNRHTLTIRHVQQEDFGNYSCVADNTLGRSKKYMEVS 131

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198450742|ref|XP_002137148.1| GA26736 [Drosophila pseudoobscura pseudoobscura] gi|198131171|gb|EDY67706.1| GA26736 [Drosophila pseudoobscura pseudoobscura]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 40/63 (63%), Positives = 54/63 (85%), Gaps = 2/63 (3%)

Query: 1   MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60
           +  +SWYQ++F I+   +DRR+M TRGN+HTLTI+++Q  DFGNYSCVADN+LGR++KYM
Sbjct: 234 VATVSWYQNSFPIQ--TTDRRIMNTRGNRHTLTIRHIQQEDFGNYSCVADNSLGRSRKYM 291

Query: 61  ELS 63
           ELS
Sbjct: 292 ELS 294

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195166338|ref|XP_002023992.1| GL27117 [Drosophila persimilis] gi|194106152|gb|EDW28195.1| GL27117 [Drosophila persimilis]

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 53/60 (88%), Gaps = 2/60 (3%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
           +SWYQ++F I+   +DRR+M TRGN+HTLTI+++Q  DFGNYSCVADN+LGR++KYMELS
Sbjct: 87  VSWYQNSFPIQ--TTDRRIMNTRGNRHTLTIRHIQQEDFGNYSCVADNSLGRSRKYMELS 144

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312379024|gb|EFR25432.1| hypothetical protein AND_09222 [Anopheles darlingi]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/58 (70%), Positives = 52/58 (89%), Gaps = 2/58 (3%)

Query: 6   WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
           WYQD+FL+ P+  DRR M+TRG KH LTI+NV+S+DFGNYSCVA+N+LGRAKKY+E+S
Sbjct: 208 WYQDSFLLHPN--DRRTMDTRGEKHYLTIRNVRSSDFGNYSCVAENSLGRAKKYIEVS 263

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195443868|ref|XP_002069612.1| GK11479 [Drosophila willistoni] gi|194165697|gb|EDW80598.1| GK11479 [Drosophila willistoni]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/63 (63%), Positives = 54/63 (85%), Gaps = 2/63 (3%)

Query: 1   MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60
           +  +SWYQ++F I+   +DRR+M TRGN+HTLTI+++Q  DFGNYSCVADN+LGR++KYM
Sbjct: 268 VATVSWYQNSFPIQ--TTDRRIMNTRGNRHTLTIRHIQQEDFGNYSCVADNSLGRSRKYM 325

Query: 61  ELS 63
           ELS
Sbjct: 326 ELS 328

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195054068|ref|XP_001993948.1| GH22352 [Drosophila grimshawi] gi|193895818|gb|EDV94684.1| GH22352 [Drosophila grimshawi]

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/63 (61%), Positives = 53/63 (84%), Gaps = 2/63 (3%)

Query: 1   MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60
           +  +SWYQ++F I+   +DRR+M TR N+HTLTI+++Q  DFGNYSCVADN+LGR++KYM
Sbjct: 176 VATVSWYQNSFPIQ--TTDRRIMNTRANRHTLTIRHIQQEDFGNYSCVADNSLGRSRKYM 233

Query: 61  ELS 63
           ELS
Sbjct: 234 ELS 236

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157103416|ref|XP_001647971.1| hypothetical protein AaeL_AAEL000536 [Aedes aegypti] gi|108884194|gb|EAT48419.1| AAEL000536-PA [Aedes aegypti]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 52/60 (86%), Gaps = 2/60 (3%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
           M WYQD+FL+ P+  DRR M++RG+KH LTI+NV+ +DFGNYSCVA+N LGRAKKY+E+S
Sbjct: 265 MMWYQDSFLLHPN--DRRTMDSRGDKHYLTIRNVRQSDFGNYSCVAENTLGRAKKYIEMS 322

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195399512|ref|XP_002058363.1| GJ14353 [Drosophila virilis] gi|194141923|gb|EDW58331.1| GJ14353 [Drosophila virilis]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/63 (61%), Positives = 53/63 (84%), Gaps = 2/63 (3%)

Query: 1   MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60
           +  +SWYQ++F I+   +DRR+M TR N+HTLTI+++Q  DFGNYSCVADN+LGR++KYM
Sbjct: 243 VATVSWYQNSFPIQ--TTDRRIMNTRANRHTLTIRHIQQEDFGNYSCVADNSLGRSRKYM 300

Query: 61  ELS 63
           ELS
Sbjct: 301 ELS 303

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195113691|ref|XP_002001401.1| GI21998 [Drosophila mojavensis] gi|193917995|gb|EDW16862.1| GI21998 [Drosophila mojavensis]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/63 (61%), Positives = 53/63 (84%), Gaps = 2/63 (3%)

Query: 1   MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60
           +  +SWYQ++F I+   +DRR+M TR N+HTLTI+++Q  DFGNYSCVADN+LGR++KYM
Sbjct: 293 VATVSWYQNSFPIQ--TTDRRIMNTRANRHTLTIRHIQQEDFGNYSCVADNSLGRSRKYM 350

Query: 61  ELS 63
           ELS
Sbjct: 351 ELS 353

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
FB|FBgn0017590	545	klg "klingon" [Drosophila mela	0.504	0.106	0.633	2.5e-16
FB|FBgn0037107	467	CG7166 [Drosophila melanogaste	0.504	0.124	0.583	9.2e-14
UNIPROTKB|E1BE11	5588	HMCN1 "Uncharacterized protein	0.634	0.013	0.363	4e-10
UNIPROTKB|Q96RW7	5635	HMCN1 "Hemicentin-1" [Homo sap	0.660	0.013	0.345	3.1e-07
UNIPROTKB|F1PXF9	5637	HMCN1 "Uncharacterized protein	0.504	0.010	0.403	5.9e-08
RGD|1564772	5548	Hmcn1 "hemicentin 1" [Rattus n	0.617	0.012	0.368	3.3e-09
ZFIN|ZDB-GENE-060929-856	809	zgc:152904 "zgc:152904" [Danio	0.530	0.075	0.375	4.1e-09
UNIPROTKB|H9KZA3	5442	HMCN1 "Uncharacterized protein	0.513	0.010	0.333	5.2e-09
FB|FBgn0265045	9270	Strn-Mlck "Stretchin-Mlck" [Dr	0.591	0.007	0.357	1.5e-08
ZFIN|ZDB-GENE-090312-22	2480	mxra5 "matrix-remodelling asso	0.713	0.033	0.305	2.9e-08

FB|FBgn0017590 klg "klingon" [Drosophila melanogaster (taxid:7227)]

 Score = 211 (79.3 bits), Expect = 2.5e-16, P = 2.5e-16
 Identities = 38/60 (63%), Positives = 51/60 (85%)

Query:     4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
             +SWYQ++F I+ +  DRR+M TR N+H LTI+++Q  DFGNYSCVADN+LGR++KYMELS
Sbjct:   319 VSWYQNSFPIQST--DRRIMATRANRHMLTIRHIQQEDFGNYSCVADNSLGRSRKYMELS 376

GO:0019897 "extrinsic to plasma membrane" evidence=ISS

GO:0007465 "R7 cell fate commitment" evidence=IGI

GO:0045466 "R7 cell differentiation" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0007611 "learning or memory" evidence=IMP

GO:0008355 "olfactory learning" evidence=IMP

GO:0048149 "behavioral response to ethanol" evidence=IMP

GO:0007616 "long-term memory" evidence=IMP

GO:0007615 "anesthesia-resistant memory" evidence=IMP

FB|FBgn0037107 CG7166 [Drosophila melanogaster (taxid:7227)]

 Score = 186 (70.5 bits), Expect = 9.2e-14, P = 9.2e-14
 Identities = 35/60 (58%), Positives = 47/60 (78%)

Query:     4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
             M WYQ++FL++   +DRR M  R ++++L I+N Q TDFGNYSCVADN LGR KKY+E+S
Sbjct:   256 MLWYQNSFLLD--ATDRRSMYPRDDRYSLIIRNFQPTDFGNYSCVADNALGRTKKYIEVS 313

GO:0005576 "extracellular region" evidence=ISS

UNIPROTKB|E1BE11 HMCN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 111 (44.1 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
 Identities = 28/77 (36%), Positives = 42/77 (54%)

Query:     4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
             +SWY+D    +P  SD  +    G  HTL IK  Q +D G Y+CVA N  G  +   +++
Sbjct:  2656 LSWYKDGQASQPLKSDDHVTIAAGG-HTLQIKEAQISDTGRYTCVASNVAGEDELDFDVN 2714

Query:    64 VSV--SDRRLMETRGNK 78
             + V  S ++L E  GN+
Sbjct:  2715 IQVPPSFQKLWEI-GNR 2730

GO:0030054 "cell junction" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|Q96RW7 HMCN1 "Hemicentin-1" [Homo sapiens (taxid:9606)]

 Score = 106 (42.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
 Identities = 28/81 (34%), Positives = 39/81 (48%)

Query:     5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
             SW +D    +P + D    +   N   L I N Q TD G Y CVA+N  G AKKY  L+V
Sbjct:  2905 SWQKDG---QPLLEDDH-HKFLSNGRILQILNTQITDIGRYVCVAENTAGSAKKYFNLNV 2960

Query:    65 SVSDRRLMETRGNKHTLTIKN 85
              V    ++  +    T+ + N
Sbjct:  2961 HVPPS-VIGPKSENLTVVVNN 2980

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0031012 "extracellular matrix" evidence=TAS

UNIPROTKB|F1PXF9 HMCN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 105 (42.0 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
 Identities = 25/62 (40%), Positives = 32/62 (51%)

Query:     5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
             SW +D    +P + D    +   N   L I N Q TD G Y C+A+N  G AKKY  L+V
Sbjct:  2907 SWQKDG---QPLLEDEH-HKFVSNGRILQILNTQITDIGRYVCIAENTAGSAKKYFNLNV 2962

Query:    65 SV 66
              V
Sbjct:  2963 HV 2964

GO:0005509 "calcium ion binding" evidence=IEA

RGD|1564772 Hmcn1 "hemicentin 1" [Rattus norvegicus (taxid:10116)]

 Score = 100 (40.3 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
 Identities = 28/76 (36%), Positives = 40/76 (52%)

Query:     4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
             + WY+D   I P  SD  +     N HTL IK  Q +D G Y+CVA N  G  +   +++
Sbjct:  2617 LRWYKDGQAI-PLKSDHHV-NIAENGHTLQIKEAQISDTGRYTCVASNLAGEDELDFDVN 2674

Query:    64 VSV--SDRRLMETRGN 77
             + V  S ++L E  GN
Sbjct:  2675 IQVPPSFQKLWEI-GN 2689

GO:0005021 "vascular endothelial growth factor-activated receptor activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0048010 "vascular endothelial growth factor receptor signaling pathway" evidence=IEA

ZFIN|ZDB-GENE-060929-856 zgc:152904 "zgc:152904" [Danio rerio (taxid:7955)]

 Score = 103 (41.3 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query:     4 MSWYQDTFLIEPSVSDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 62
             ++WY     IE S  ++ ++ T  G K TLT+KN++ TD G Y C A N  G ++  + L
Sbjct:   211 VTWYWKGHAIEHS--EQYVLNTMNGGKSTLTVKNIKQTDGGPYMCRASNKAGSSESQLFL 268

Query:    63 SVSV 66
              V V
Sbjct:   269 KVFV 272

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|H9KZA3 HMCN1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 98 (39.6 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
 Identities = 21/63 (33%), Positives = 36/63 (57%)

Query:     4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
             +SWY+D   ++P   DR +++  G  HTL I   Q +D G Y+C+A N  G  +   +++
Sbjct:  2621 ISWYKDGQPLKPD--DRVIIQASG--HTLQITEAQVSDTGRYTCLASNIAGEDEVEFDIN 2676

Query:    64 VSV 66
             + V
Sbjct:  2677 IQV 2679

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

FB|FBgn0265045 Strn-Mlck "Stretchin-Mlck" [Drosophila melanogaster (taxid:7227)]

 Score = 104 (41.7 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
 Identities = 25/70 (35%), Positives = 37/70 (52%)

Query:     4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
             ++W++D   +  S S+R  +   G+   LTI  V   D G Y+C A N+ GR   +  L 
Sbjct:  7368 VTWFKDGIQLSSS-SERVKIRQIGSTCALTIATVSELDSGRYTCEATNSKGRVSTFARLQ 7426

Query:    64 VSVSDRRLME 73
             V VSD R+ E
Sbjct:  7427 V-VSDSRIYE 7435

GO:0006468 "protein phosphorylation" evidence=IEA;ISS;NAS

GO:0004687 "myosin light chain kinase activity" evidence=ISS;IDA

GO:0004683 "calmodulin-dependent protein kinase activity" evidence=IDA

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=NAS

GO:0005524 "ATP binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

ZFIN|ZDB-GENE-090312-22 mxra5 "matrix-remodelling associated 5" [Danio rerio (taxid:7955)]

 Score = 109 (43.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
 Identities = 26/85 (30%), Positives = 44/85 (51%)

Query:     3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 62
             ++ W+  T     S SD+  +   G   TL IK VQ  D GNY C+A N+ G+ +K   +
Sbjct:  2030 LVLWFSPTNRAITSSSDKYFIHNNG---TLIIKKVQRFDGGNYICLARNSAGQDRKVTRV 2086

Query:    63 SVSVSDRRLMETRGNKHTLTIKNVQ 87
              + VS   +   +G  ++L + +V+
Sbjct:  2087 EILVSPPAINGFKGTTNSLRVSSVR 2111

GO:0048010 "vascular endothelial growth factor receptor signaling pathway" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005021 "vascular endothelial growth factor-activated receptor activity" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	115
smart00410	85	smart00410, IG_like, Immunoglobulin like	9e-11
smart00409	85	smart00409, IG, Immunoglobulin	9e-11
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-10
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	8e-09
smart00410	85	smart00410, IG_like, Immunoglobulin like	1e-07
smart00409	85	smart00409, IG, Immunoglobulin	1e-07
cd00096	74	cd00096, Ig, Immunoglobulin domain	2e-07
cd00096	74	cd00096, Ig, Immunoglobulin domain	2e-05
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	2e-05
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	2e-05
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	2e-05
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	3e-05
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	3e-05
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	5e-05
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	9e-05
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	2e-04
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	2e-04
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	3e-04
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	5e-04
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	5e-04
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	6e-04
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	6e-04
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	8e-04
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	9e-04
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	9e-04
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	0.001
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	0.002
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	0.002
cd05757	92	cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig)	0.002
cd05758	98	cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (I	0.002
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	0.003
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	0.003
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	0.003
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	0.003
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	0.004

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 53.3 bits (128), Expect = 9e-11
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 3  MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 62
           ++WY+       + S R  +   G+  TLTI NV   D G Y+C A N+ G A     L
Sbjct: 25 EVTWYKQG-GKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTL 83

Query: 63 SV 64
          +V
Sbjct: 84 TV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 53.3 bits (128), Expect = 9e-11
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 3  MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 62
           ++WY+       + S R  +   G+  TLTI NV   D G Y+C A N+ G A     L
Sbjct: 25 EVTWYKQG-GKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTL 83

Query: 63 SV 64
          +V
Sbjct: 84 TV 85

Length = 85

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 53.0 bits (128), Expect = 1e-10
 Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
          SW++D   +  S  DR  +   G  +TLTI NVQ  D G Y+CVA N+ G A+   EL+V
Sbjct: 33 SWFKDGQPLRSS--DRFKVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 48.4 bits (116), Expect = 8e-09
 Identities = 22/48 (45%), Positives = 28/48 (58%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
           +  SDR  +   G  +TLTI NVQ  D G Y+CVA N+ G A+   EL
Sbjct: 41  LRSSDRFKVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGEAEASAEL 88

Length = 90

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 45.2 bits (107), Expect = 1e-07
 Identities = 18/49 (36%), Positives = 25/49 (51%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           ++ S R  +   G+  TLTI NV   D G Y+C A N+ G A     L+
Sbjct: 36  LAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLT 84

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 45.2 bits (107), Expect = 1e-07
 Identities = 18/49 (36%), Positives = 25/49 (51%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           ++ S R  +   G+  TLTI NV   D G Y+C A N+ G A     L+
Sbjct: 36  LAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLT 84

Length = 85

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 44.8 bits (105), Expect = 2e-07
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 4  MSWYQDTFLIEPSVSDRRL--METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 61
          ++W ++   +  SV  R      T     TLTI NV   D G Y+CVA N+ G     + 
Sbjct: 15 ITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 39.4 bits (91), Expect = 2e-05
 Identities = 18/50 (36%), Positives = 21/50 (42%)

Query: 61  ELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 110
             SV    R    T     TLTI NV   D G Y+CVA N+ G     + 
Sbjct: 25  PSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 39.7 bits (93), Expect = 2e-05
 Identities = 13/35 (37%), Positives = 23/35 (65%)

Query: 30 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           +L I+NV + D G+Y+C A+N +G+ +    L+V
Sbjct: 35 KSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 11/27 (40%), Positives = 19/27 (70%)

Query: 79  HTLTIKNVQSTDFGNYSCVADNNLGRA 105
            +L I+NV + D G+Y+C A+N +G+ 
Sbjct: 35  KSLKIRNVTAGDEGSYTCEAENMVGKI 61

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 39.7 bits (93), Expect = 2e-05
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG-RAKKYMELS 63
          SW +D   +    ++R  +   GN   L I   + +D G Y CVA N +G R      LS
Sbjct: 30 SWRKDGQPLN-LDNERVRIVDDGN---LLIAEARKSDEGTYKCVATNMVGERESAAARLS 85

Query: 64 V 64
          V
Sbjct: 86 V 86

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 38.9 bits (91), Expect = 3e-05
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV 66
             TL I NV   D G Y C A N+LG A+    +SV+V
Sbjct: 34 FNKTLKIDNVSEEDDGEYRCTASNSLGSARH--TISVTV 70

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 38.9 bits (91), Expect = 3e-05
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 77  NKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
              TL I NV   D G Y C A N+LG A+
Sbjct: 34  FNKTLKIDNVSEEDDGEYRCTASNSLGSAR 63

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 38.2 bits (89), Expect = 5e-05
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG 54
          +W +D    +P     R + +     TLTIK+V   D G Y+CVA+N+ G
Sbjct: 20 TWLKDG---KPLPESNRFVASGS---TLTIKSVSLEDSGLYTCVAENSAG 63

Length = 63

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 37.8 bits (88), Expect = 9e-05
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
          +L I NV  +D G Y+C A+N  G+A     LSV
Sbjct: 40 SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG 103
              R + +     TLTIK+V   D G Y+CVA+N+ G
Sbjct: 30  ESNRFVASGS---TLTIKSVSLEDSGLYTCVAENSAG 63

Length = 63

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 4  MSWYQDTFLI---EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60
          ++W + T      + S+  R ++       +LT+K+VQ TD G Y C A N +G  ++ M
Sbjct: 33 ITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSM 92

Query: 61 ELSV 64
           L V
Sbjct: 93 YLEV 96

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 36.6 bits (84), Expect = 3e-04
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 4  MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN 51
          +SWY++  +   S           +  TLT+ +V S D G Y+CVA N
Sbjct: 33 ISWYRNGSISGGSGG------LGSSGSTLTLSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 35.9 bits (83), Expect = 5e-04
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 80  TLTIKNVQSTDFGNYSCVADNNLGRAK 106
           +L I NV  +D G Y+C A+N  G+A 
Sbjct: 40  SLEILNVTKSDEGKYTCFAENFFGKAN 66

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 35.9 bits (83), Expect = 5e-04
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 63  SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR 104
            V  S R  + + G   TLTI++V+ +D G Y+C A N  G 
Sbjct: 26  HVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGM 67

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 35.8 bits (83), Expect = 6e-04
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG-RAKKYMELS 112
              ++R  +   GN   L I   + +D G Y CVA N +G R      LS
Sbjct: 39  NLDNERVRIVDDGN---LLIAEARKSDEGTYKCVATNMVGERESAAARLS 85

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 35.5 bits (82), Expect = 6e-04
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 20 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR 55
          R  + + G   TLTI++V+ +D G Y+C A N  G 
Sbjct: 32 RVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGM 67

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 35.4 bits (81), Expect = 8e-04
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 4  MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG 54
          ++W++D   ++ + + R      G    L I+N + +D G Y CVA N+ G
Sbjct: 15 ITWFKDFLPVDTTSNGRIKQLRSG---ALQIENSEESDQGKYECVATNSAG 62

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 34.9 bits (80), Expect = 9e-04
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
           L I++V   D G Y CVA N +G A   M LS
Sbjct: 37 YLAIRDVGVADQGRYECVARNTIGYASVSMVLS 69

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 34.9 bits (80), Expect = 9e-04
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 80  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
            L I++V   D G Y CVA N +G A   M LS
Sbjct: 37  YLAIRDVGVADQGRYECVARNTIGYASVSMVLS 69

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 35.6 bits (82), Expect = 0.001
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 72  METRGN--KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
           +  RG+    +LT+K+VQ TD G Y C A N +G  ++ M L
Sbjct: 53  IVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYL 94

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 10/61 (16%)

Query: 14 EPSVSDRR---LMETRGNKHT-------LTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
          EP+++  +    +E+   K++       +TI +V   D   Y+C+A+N  G  +  + L 
Sbjct: 32 EPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLK 91

Query: 64 V 64
          V
Sbjct: 92 V 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
          +LT+K +Q TD G Y C A N +G+  + M L V
Sbjct: 64 SLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV 97

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143234 cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 6  WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVA 49
          WY+D  L+E      R    +G+K  L I+NV   D GNY+C  
Sbjct: 34 WYKDCKLLE----GDRKRFVKGSK--LLIQNVTEEDAGNYTCKL 71

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1R1L) which maps to the same chromosomal location as IL1R1 and IL1R2. Length = 92

>gnl|CDD|143235 cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

 Score = 34.3 bits (79), Expect = 0.002
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%)

Query: 60  MELSVSVSDRRLMET----RGNKHTLTIKNVQSTDF-GNYSCVADNNLG 103
            EL    S R  +ET     G   TLTI N Q +DF  +Y+C A N+ G
Sbjct: 41  NELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFG 89

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Length = 98

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 33.9 bits (77), Expect = 0.003
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 79  HTLTIKNVQSTDFGNYSCVADN 100
            TLT+ +V S D G Y+CVA N
Sbjct: 53  STLTLSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 34.2 bits (78), Expect = 0.003
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 15 PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR--AKKYMELSVSVSDR 69
          P  S R  +   G+   LTI NVQ +D G Y C   N  G    K Y+E++  ++DR
Sbjct: 35 PQSSSRFSVSQTGD---LTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTDVIADR 88

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 34.1 bits (78), Expect = 0.003
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 32 LTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
          LTI+NVQ +D G Y C   N L   +    L 
Sbjct: 54 LTIRNVQLSDAGTYVCTGSNMLDTDEATATLY 85

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 34.1 bits (78), Expect = 0.003
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 81  LTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           LTI+NVQ +D G Y C   N L   +    L 
Sbjct: 54  LTIRNVQLSDAGTYVCTGSNMLDTDEATATLY 85

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 33.5 bits (77), Expect = 0.004
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 5/54 (9%)

Query: 4  MSWYQDTFLIEPSVSDRRL--METRGNKHTLTIKNVQSTDFGNYSCVADNNLGR 55
          ++W +D    +P   + R+   + R  K TL +++V  +D G Y+C+ +N  G 
Sbjct: 26 ITWLKDG---KPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGS 76

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	115
KOG3513|consensus	1051		99.84
KOG3513|consensus	1051		99.76
PHA02826	227	IL-1 receptor-like protein; Provisional	99.65
KOG4194|consensus	873		99.62
PHA02785	326	IL-beta-binding protein; Provisional	99.61
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.57
KOG4221|consensus	1381		99.56
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.55
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.54
PHA02785	326	IL-beta-binding protein; Provisional	99.54
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.52
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.51
KOG4194|consensus	873		99.5
KOG4222|consensus	1281		99.5
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.46
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.46
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.45
KOG4222|consensus	1281		99.45
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.45
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.45
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.44
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.42
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.42
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.42
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.4
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.4
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.4
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.4
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.39
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.39
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.38
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.38
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.37
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.37
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.37
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.36
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.36
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.35
KOG4221|consensus	1381		99.35
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.34
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.34
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.34
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.33
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.33
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.33
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.33
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.33
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.33
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.32
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.32
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.32
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.31
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.31
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.31
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.31
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.31
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.3
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.3
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.3
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.3
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.3
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.3
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.29
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.29
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.29
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.29
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.28
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.28
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.28
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.28
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.28
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.28
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.27
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.27
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.27
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.26
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.26
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.25
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.25
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.25
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.25
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.25
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.25
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.25
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.24
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.23
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.23
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.23
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.22
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.22
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.22
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.22
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.21
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.21
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.21
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.2
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.2
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.2
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.2
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.19
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.19
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.18
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.18
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.18
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.18
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.18
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.17
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.17
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.17
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.17
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.16
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.16
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.16
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.16
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.15
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.15
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.15
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.15
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.14
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.13
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.13
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.13
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.11
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.1
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.1
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.1
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.1
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.09
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.09
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.08
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.08
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.07
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.06
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.06
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.06
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.05
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.03
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.03
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.02
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.01
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.01
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.01
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.01
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.0
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.99
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.98
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	98.98
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.98
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.97
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.97
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.97
PHA02826	227	IL-1 receptor-like protein; Provisional	98.96
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.95
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.95
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.95
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	98.92
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.9
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.9
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.89
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.88
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.88
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.88
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.87
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	98.84
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.84
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.84
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.83
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.81
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.81
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	98.8
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.8
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	98.79
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.79
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.78
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.78
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.78
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.77
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.77
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.76
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.71
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.7
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.7
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.68
smart00409	86	IG Immunoglobulin.	98.68
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.67
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.66
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.66
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.66
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.65
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.64
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.64
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.64
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.64
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.61
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.59
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.53
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.49
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.49
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.49
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.48
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.48
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.47
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.46
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.45
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.44
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.44
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.41
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.37
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.37
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.33
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.33
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.31
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.28
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.28
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.27
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.27
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.27
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.24
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.22
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.22
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.21
PHA03376	221	BARF1; Provisional	98.18
smart00409	86	IG Immunoglobulin.	98.18
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.18
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.12
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.11
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.1
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.1
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.09
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.08
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.07
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.05
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.05
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.05
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.01
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.0
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.0
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	97.99
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	97.99
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	97.99
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.98
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	97.98
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	97.98
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.98
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	97.97
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.97
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	97.96
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	97.96
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	97.95
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	97.94
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	97.94
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.94
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	97.93
PHA02633	63	hypothetical protein; Provisional	97.92
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	97.91
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	97.88
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	97.88
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	97.84
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.83
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	97.82
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	97.82
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.8
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.8
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.8
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.8
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	97.73
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.72
PF00047	64	ig: Immunoglobulin domain The Prosite family only	97.71
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	97.69
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	97.67
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.67
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.67
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	97.65
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	97.64
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.63
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.62
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	97.58
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.58
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	97.54
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	97.53
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	97.51
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.44
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	97.4
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	97.36
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.31
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.27
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.23
smart00406	81	IGv Immunoglobulin V-Type.	97.22
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.21
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	97.18
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	97.16
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	97.15
KOG3515|consensus	741		97.15
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.15
PHA03376	221	BARF1; Provisional	97.14
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.13
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.12
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.09
smart00407	75	IGc1 Immunoglobulin C-Type.	97.09
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.05
smart00406	81	IGv Immunoglobulin V-Type.	97.04
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	97.04
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.01
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	96.93
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	96.88
PHA02987	189	Ig domain OX-2-like protein; Provisional	96.84
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	96.75
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	96.7
PHA02633	63	hypothetical protein; Provisional	96.64
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	96.62
cd05770	93	IgC_beta2m Class I major histocompatibility comple	96.55
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	96.53
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	96.48
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	96.44
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	96.34
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	96.12
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	96.09
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	96.07
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	96.01
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	95.88
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	95.81
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	95.8
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	95.69
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	95.57
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	95.56
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	95.5
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	95.43
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	95.34
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	95.33
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	95.3
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	95.29
PHA02982	251	hypothetical protein; Provisional	95.24
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	95.24
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	95.04
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	95.02
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	94.95
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	94.69
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	94.61
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	94.6
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	94.54
PHA03042	286	CD47-like protein; Provisional	94.31
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	94.21
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	94.11
PHA02914	500	Immunoglobulin-like domain protein; Provisional	93.95
PHA02982	251	hypothetical protein; Provisional	93.88
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	93.83
KOG3515|consensus	741		93.25
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	93.08
KOG1480|consensus	909		92.8
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	92.64
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	92.5
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	91.67
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	90.83
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	90.71
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	90.28
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	90.15
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	89.78
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	86.28
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	83.14
PHA03042	286	CD47-like protein; Provisional	81.24
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	80.96

>KOG3513|consensus

Probab=99.84  E-value=7.6e-20  Score=127.35  Aligned_cols=108  Identities=32%  Similarity=0.533  Sum_probs=92.5

Q ss_pred             cceEEEECCEEeCCCCCCC---EEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE--------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDR---RLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL--------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v--------------   62 (115)
                      |+|+|++||.++..  ..+   +.+    ....|+|.+++..|+|.|.|.+.|..|...+  .|.|              
T Consensus       361 p~v~WlkNg~pl~~--~~r~~~~~i----~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~  434 (1051)
T KOG3513|consen  361 PTVKWLKNGEPLEP--AERDPRYKI----DDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVER  434 (1051)
T ss_pred             CceEEeeCCeecCc--cCCCcceEE----eCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccce
Confidence            79999999999986  444   444    3678999999999999999999999988877  5555              


Q ss_pred             ----------------ecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 ----------------SVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ----------------~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                                      +|.|.|.+.|.+.+.            .++|.|.+++++|+|.|+|.|+|.+|..+....|.|.
T Consensus       435 ~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vk  514 (1051)
T KOG3513|consen  435 KVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVK  514 (1051)
T ss_pred             EEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEe
Confidence                            568888899987653            3489999999999999999999999999999999886


Q ss_pred             C
Q psy3272         115 E  115 (115)
Q Consensus       115 ~  115 (115)
                      +
T Consensus       515 d  515 (1051)
T KOG3513|consen  515 D  515 (1051)
T ss_pred             c
Confidence            3

>KOG3513|consensus

Probab=99.76  E-value=2.1e-17  Score=115.48  Aligned_cols=108  Identities=31%  Similarity=0.411  Sum_probs=89.7

Q ss_pred             CcceEEEECCE-EeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE---------------
Q psy3272           1 MGMMSWYQDTF-LIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL---------------   62 (115)
Q Consensus         1 ~p~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v---------------   62 (115)
                      .|+|.|.|.+. +++.    +.  .....+..|.|.+++.+|+|.|.|.+.|..|....  .+.|               
T Consensus       270 ~P~i~W~k~~g~~~~~----r~--~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~  343 (1051)
T KOG3513|consen  270 TPQIKWRKVDGKPPPR----RA--TYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEA  343 (1051)
T ss_pred             CCcEEEEeCCCCCCCc----ce--eeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEe
Confidence            48999999776 4433    21  12335788999999999999999999999997766  4444               


Q ss_pred             ------------ecccCCcEEEEEeCC--------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 ------------SVSVSDRRLMETRGN--------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ------------~g~~~~~~~~~~~~~--------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                                  .|.|.|.+.|.+++.              ...|.|+++..+|+|.|.|.|.|..|..-+.+.|.|+
T Consensus       344 ~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~  421 (1051)
T KOG3513|consen  344 DTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVL  421 (1051)
T ss_pred             cCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEE
Confidence                        679999999998772              3489999999999999999999999999999999886

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.65  E-value=6.3e-15  Score=89.76  Aligned_cols=111  Identities=22%  Similarity=0.239  Sum_probs=75.3

Q ss_pred             cceEEEECCEEe--CCCCCCC---E--E-EEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE--EEE---------
Q psy3272           2 GMMSWYQDTFLI--EPSVSDR---R--L-METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY--MEL---------   62 (115)
Q Consensus         2 p~v~W~~~~~~~--~~~~~~~---~--~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~--~~v---------   62 (115)
                      ++|+|+|++...  .. ...+   .  . ......+..|.|.+++.+|+|.|.|.+.+..+.....  +.|         
T Consensus        63 ~~V~W~k~~s~~~v~~-~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~~~~~~  141 (227)
T PHA02826         63 YNVTWSKTDSLAFVRD-SGARTKIKKITHNEIGDRSENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGTINYQF  141 (227)
T ss_pred             ccEEEEeCCeEEEEEc-CCCccccccccccceecCCCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCCccceE
Confidence            489999987642  11 0111   0  0 0011235689999999999999999999877655443  333         


Q ss_pred             -------------e----cccCCcEEEEEeCC-------------eEEEEEeccCCCCCeeeEEEeecCccc----eeeE
Q psy3272          63 -------------S----VSVSDRRLMETRGN-------------KHTLTIKNVQSTDFGNYSCVADNNLGR----AKKY  108 (115)
Q Consensus        63 -------------~----g~~~~~~~~~~~~~-------------~~~l~i~~~~~~d~G~y~C~~~n~~~~----~~~~  108 (115)
                                   .    |.|.|.+.|.+++.             ...|.|.+++.+|+|.|+|.+......    .++.
T Consensus       142 ~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~g~~y~~t~~  221 (227)
T PHA02826        142 NSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNKNSNNYNITKE  221 (227)
T ss_pred             ecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeECCEEEEEEEE
Confidence                         1    24578899988653             236999999999999999999986532    4455


Q ss_pred             EEEEE
Q psy3272         109 MELSE  113 (115)
Q Consensus       109 ~~l~v  113 (115)
                      +.|.|
T Consensus       222 ~~~~~  226 (227)
T PHA02826        222 YKVTI  226 (227)
T ss_pred             EEEEE
Confidence            55544

>KOG4194|consensus

Probab=99.62  E-value=5.2e-15  Score=98.96  Aligned_cols=87  Identities=29%  Similarity=0.441  Sum_probs=75.9

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE---------------------------ecccCCcEEEEEeCCe
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL---------------------------SVSVSDRRLMETRGNK   78 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v---------------------------~g~~~~~~~~~~~~~~   78 (115)
                      ...|++.+++..|+|.|.|++.|.+|...+   .+.|                           .|.|.|.+.|-++++.
T Consensus       573 ~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggt  652 (873)
T KOG4194|consen  573 TAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGT  652 (873)
T ss_pred             hheeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCC
Confidence            467899999999999999999999988877   4444                           6799999999887642


Q ss_pred             ----------------EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEeC
Q psy3272          79 ----------------HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE  115 (115)
Q Consensus        79 ----------------~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~~  115 (115)
                                      -.+.|.++..+|.|.|+|.|+|..|..+..+.|.|.|
T Consensus       653 dFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e  705 (873)
T KOG4194|consen  653 DFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE  705 (873)
T ss_pred             CCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEec
Confidence                            2689999999999999999999999999999998864

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.61  E-value=5.5e-14  Score=89.97  Aligned_cols=97  Identities=21%  Similarity=0.326  Sum_probs=68.2

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE-----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL-----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v-----------------   62 (115)
                      |+|+|+|+|....     + .... ..+..|.|.++..+|+|.|.|.+.|..+....  .|.|                 
T Consensus        61 ~~i~W~K~g~~~~-----~-~~~~-~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~  133 (326)
T PHA02785         61 LDILWEKRGADND-----R-IIPI-DNGSNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQIV  133 (326)
T ss_pred             ceEEEEECCCccc-----e-EEEc-cCCceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEecCCCccceeecccee
Confidence            6799999874211     1 1111 13445778999999999999999987654443  3333                 


Q ss_pred             -----------------ecccCCcEEEEEeCC----------eEEEEEeccCCCCCeeeEEEeecCccce
Q psy3272          63 -----------------SVSVSDRRLMETRGN----------KHTLTIKNVQSTDFGNYSCVADNNLGRA  105 (115)
Q Consensus        63 -----------------~g~~~~~~~~~~~~~----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~  105 (115)
                                       .+.|.+.+.|.+...          ...|.|.+++.+|.|.|+|.+.|..+..
T Consensus       134 ~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~  203 (326)
T PHA02785        134 NERSTGEMVCPNINAFIASNVNADIIWSGHRRLRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDK  203 (326)
T ss_pred             cccCcEEEECCChhhcccCCCCceEEEccCCccCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCE
Confidence                             135566777755321          2479999999999999999999988764

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.57  E-value=8.6e-14  Score=74.69  Aligned_cols=66  Identities=20%  Similarity=0.245  Sum_probs=55.2

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEecccCC
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSVSVSD   68 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g~~~~   68 (115)
                      .|++.|+|++.++..  ..++.+......+.|.|.++..+|+|.|+|.+.|..|....  .|.|.+.|.|
T Consensus        29 ~p~v~W~kdg~~l~~--~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P~p   96 (98)
T cd05762          29 PITCTWMKFRKQIQE--GEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKPDP   96 (98)
T ss_pred             CCceEEEECCEEecC--CCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCCCC
Confidence            478999999999976  66776666666789999999999999999999999998887  5666666654

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>KOG4221|consensus

Probab=99.56  E-value=8.2e-14  Score=98.53  Aligned_cols=109  Identities=21%  Similarity=0.337  Sum_probs=85.3

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE---------------
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL---------------   62 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v---------------   62 (115)
                      .|.|.|.|+..+++.  ..++.+   .....|.|.++++.|.|.|.|.+.+......+   .+.|               
T Consensus       169 ~p~i~w~kn~~pl~~--~~r~i~---lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~  243 (1381)
T KOG4221|consen  169 VPTIMWLKNDQPLPL--DSRVIV---LPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDE  243 (1381)
T ss_pred             CceeEEecccccccC--CCcEEE---cCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecC
Confidence            368999999998888  555433   46788999999999999999999876543333   3443               


Q ss_pred             ------------------ecccCCcEEEEEeCC-------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEE
Q psy3272          63 ------------------SVSVSDRRLMETRGN-------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL  111 (115)
Q Consensus        63 ------------------~g~~~~~~~~~~~~~-------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l  111 (115)
                                        .|.|.|.+.|..++.             ...|.|.+++..|+|.|+|.|.|......+...|
T Consensus       244 p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev  323 (1381)
T KOG4221|consen  244 PSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEV  323 (1381)
T ss_pred             CCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEE
Confidence                              568899999988653             2368999999999999999999977666666666


Q ss_pred             EEe
Q psy3272         112 SEL  114 (115)
Q Consensus       112 ~v~  114 (115)
                      .|+
T Consensus       324 ~V~  326 (1381)
T KOG4221|consen  324 TVL  326 (1381)
T ss_pred             EEE
Confidence            664

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.55  E-value=1.1e-13  Score=71.75  Aligned_cols=60  Identities=25%  Similarity=0.408  Sum_probs=46.5

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEE-------eCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMET-------RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL   62 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v   62 (115)
                      .|.|+|+|+|.++..  ........       ......|.|.++..+|+|.|+|.+.|..|.....+.|
T Consensus        12 ~P~v~W~k~g~~i~~--~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~   78 (81)
T cd04971          12 KPTLTWYHNGAVLNE--SDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISA   78 (81)
T ss_pred             CCcEEEEECCEECcC--CCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEe
Confidence            489999999999876  44332211       1235679999999999999999999999998876554

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.54  E-value=2.3e-13  Score=69.44  Aligned_cols=59  Identities=25%  Similarity=0.410  Sum_probs=49.5

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME   61 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~   61 (115)
                      .|.++|+|+|..+..  ..++.+........|.|.++..+|+|.|+|.+.|..|.....+.
T Consensus        13 ~p~v~W~k~g~~l~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   71 (74)
T cd05748          13 TPTVTWSKDGKPLKL--SGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATIN   71 (74)
T ss_pred             CCeEEEEECCEEcCC--CCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEE
Confidence            489999999998866  66666655566789999999999999999999999988877444

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.54  E-value=4.1e-13  Score=85.97  Aligned_cols=100  Identities=21%  Similarity=0.321  Sum_probs=69.2

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE------EEEE-------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK------YMEL-------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~------~~~v-------------   62 (115)
                      |.|+|+++.. +.   ..++..   .....|.|.+++.+|.|.|+|.+.+..+....      .+.|             
T Consensus       156 ~~i~W~k~~~-~~---~~r~~~---~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~  228 (326)
T PHA02785        156 ADIIWSGHRR-LR---NKRLKQ---RTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPE  228 (326)
T ss_pred             ceEEEccCCc-cC---CcceEe---cCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCC
Confidence            6899998642 22   233322   23468999999999999999999986654322      1221             


Q ss_pred             ----------------ecccC---CcEEEEEeCC----------------------------eEEEEEeccCCCCCeeeE
Q psy3272          63 ----------------SVSVS---DRRLMETRGN----------------------------KHTLTIKNVQSTDFGNYS   95 (115)
Q Consensus        63 ----------------~g~~~---~~~~~~~~~~----------------------------~~~l~i~~~~~~d~G~y~   95 (115)
                                      .|.|.   +.+.|.+++.                            ...|.|.++..+|.|.|+
T Consensus       229 ~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~  308 (326)
T PHA02785        229 GVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFT  308 (326)
T ss_pred             cEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeE
Confidence                            34554   3677876531                            136899999999999999


Q ss_pred             EEeecCccceeeE
Q psy3272          96 CVADNNLGRAKKY  108 (115)
Q Consensus        96 C~~~n~~~~~~~~  108 (115)
                      |.|.|..+...+.
T Consensus       309 C~A~n~~~~~~~~  321 (326)
T PHA02785        309 CMAFTIPSISKTV  321 (326)
T ss_pred             EEEEeccCceEee
Confidence            9999988654443

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.52  E-value=1.8e-13  Score=69.94  Aligned_cols=57  Identities=28%  Similarity=0.360  Sum_probs=45.2

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeC-CeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRG-NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+|++..+... .+++.+.... ....|.|.++..+|+|.|+|.+.|..|....
T Consensus        12 ~P~i~W~k~~~~i~~~-~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~   69 (75)
T cd05892          12 PPKIFWKRNNEMVQYN-TDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATC   69 (75)
T ss_pred             CCeEEEEECCEECcCC-CCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEE
Confidence            4899999999988741 3455543322 3358999999999999999999999988876

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.51  E-value=3e-13  Score=69.62  Aligned_cols=59  Identities=19%  Similarity=0.356  Sum_probs=45.8

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEE-----EeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLME-----TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME   61 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~   61 (115)
                      .|+|+|||+|.+|..  ..+....     .......|.|.++..+|+|.|+|.|.|..|....++.
T Consensus        12 ~Pti~W~kng~~l~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~   75 (79)
T cd05855          12 KPTLQWFHEGAILNE--SEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVS   75 (79)
T ss_pred             CCceEEEECCEECCC--CcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEE
Confidence            489999999999976  4443211     1123568999999999999999999999998877544

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>KOG4194|consensus

Probab=99.50  E-value=2.9e-13  Score=90.84  Aligned_cols=111  Identities=22%  Similarity=0.293  Sum_probs=84.0

Q ss_pred             CcceEEEECCEE-eCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE---------------
Q psy3272           1 MGMMSWYQDTFL-IEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL---------------   62 (115)
Q Consensus         1 ~p~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v---------------   62 (115)
                      .|.|.|-|+|.. ++.....|..+  -.....+.|.+++.+|.|.|+|.+.+..|...+  ++.|               
T Consensus       641 ~PeIawqkdggtdFPAA~eRRl~V--mpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V  718 (873)
T KOG4194|consen  641 RPEIAWQKDGGTDFPAARERRLHV--MPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLV  718 (873)
T ss_pred             CcceeehhcCCCCCchhhhheeee--cCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEE
Confidence            489999998875 66533343322  234566789999999999999999998888777  5655               


Q ss_pred             ------------ecccC-CcEEEEEeC-------------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          63 ------------SVSVS-DRRLMETRG-------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        63 ------------~g~~~-~~~~~~~~~-------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                                  .|.|. |+..|++++             ...-|++.+...+|+|.|+|...|..|.....+.+.+
T Consensus       719 ~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~  795 (873)
T KOG4194|consen  719 VVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLV  795 (873)
T ss_pred             EecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEE
Confidence                        34554 888887754             3456889999999999999999999998766665554

>KOG4222|consensus

Probab=99.50  E-value=2e-13  Score=96.18  Aligned_cols=110  Identities=30%  Similarity=0.396  Sum_probs=76.4

Q ss_pred             CcceEEEECCEEe-CCCC-CCCEEEEEeCCeEEEEEecC-----CCCCCeEEEEEeecCCcceeE---EEEE--------
Q psy3272           1 MGMMSWYQDTFLI-EPSV-SDRRLMETRGNKHTLTIKNV-----QSTDFGNYSCVADNNLGRAKK---YMEL--------   62 (115)
Q Consensus         1 ~p~v~W~~~~~~~-~~~~-~~~~~~~~~~~~~~l~i~~~-----~~~d~G~y~C~~~~~~~~~~~---~~~v--------   62 (115)
                      .|+|.|||+|... ..++ ..++.    .....|.+..+     ...|.|.|.|.+.+..+.+.+   .+.+        
T Consensus        60 pPti~w~k~G~~~~~~e~~shR~~----lp~gsLf~l~~ahg~~a~~d~G~y~cvasn~~g~avSr~a~L~vavlrddfr  135 (1281)
T KOG4222|consen   60 PPTIEWYKDGENVFKGEPGSHRFL----LPDGSLFLLRLAHGKKAGHDHGVYSCVASNRLGEAVSRGASLIVAVLRDDFR  135 (1281)
T ss_pred             CCceecccCCcccCCCCCCCccee----cCCccEEEEecccCCcccCCCceeEeeecCccceeeecCceEEEEEechhcc
Confidence            4799999999633 3321 22222    22333332221     123889999999999888877   4444        


Q ss_pred             ---------------------ecccCCcEEEEEeCC--------------eEEEEEeccCCCCCeeeEEEeecCccce-e
Q psy3272          63 ---------------------SVSVSDRRLMETRGN--------------KHTLTIKNVQSTDFGNYSCVADNNLGRA-K  106 (115)
Q Consensus        63 ---------------------~g~~~~~~~~~~~~~--------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~-~  106 (115)
                                           .|.|.+.++|.+++.              ...|.|.++++.|.|+|.|.++|..|.. +
T Consensus       136 v~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS  215 (1281)
T KOG4222|consen  136 VSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERES  215 (1281)
T ss_pred             cCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeeccccccccc
Confidence                                 567888888888763              2369999999999999999999999984 4


Q ss_pred             eEEEEEEe
Q psy3272         107 KYMELSEL  114 (115)
Q Consensus       107 ~~~~l~v~  114 (115)
                      ....|+|.
T Consensus       216 ~~A~lsv~  223 (1281)
T KOG4222|consen  216 IPARLSVQ  223 (1281)
T ss_pred             ccceeeec
Confidence            46666664

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.46  E-value=1.7e-12  Score=68.04  Aligned_cols=60  Identities=15%  Similarity=0.272  Sum_probs=48.5

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME   61 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~   61 (115)
                      .|.|+|+|++.++... ..++.+........|.|.++..+|+|.|.|.+.|..|.....+.
T Consensus        24 ~P~v~W~k~~~~i~~~-~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   83 (86)
T cd05894          24 APTVTWSRGDKAFTET-EGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF   83 (86)
T ss_pred             CCeEEEEECCEECccC-CCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence            4899999999988641 34566555556788999999999999999999999998877443

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.46  E-value=4.3e-13  Score=67.02  Aligned_cols=48  Identities=31%  Similarity=0.478  Sum_probs=40.5

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.++|||||.++..  .        .....|.|.++..+|+|.|+|.+.|..+....
T Consensus        12 ~P~v~W~kdg~~l~~--~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~   59 (67)
T cd05863          12 PPEFQWYKDGKLISG--K--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEK   59 (67)
T ss_pred             CCEEEEEECCEECcc--c--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEE
Confidence            489999999998864  1        13568999999999999999999999886655

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.45  E-value=1.8e-12  Score=68.80  Aligned_cols=59  Identities=29%  Similarity=0.403  Sum_probs=47.6

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEe-CCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETR-GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME   61 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~   61 (115)
                      .|.|.|+|++.++..  .+++.+... .....|.|.++..+|+|.|.|.+.|..|.....+.
T Consensus        30 ~p~v~W~k~g~~l~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   89 (92)
T cd05737          30 DPEVSWLKNDQALAL--SDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVT   89 (92)
T ss_pred             CCeEEEEECCEECcc--CCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEE
Confidence            378999999999876  666655433 34568999999999999999999999988877443

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>KOG4222|consensus

Probab=99.45  E-value=4.5e-13  Score=94.42  Aligned_cols=110  Identities=25%  Similarity=0.347  Sum_probs=87.0

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v----------------   62 (115)
                      |.|.|.|+|+++......++.+   -.+..|.|.++...|+|.|.|++.|..+...+   .+.|                
T Consensus       162 ptvSw~Kdg~pl~~~~~~~~~l---isgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~  238 (1281)
T KOG4222|consen  162 PTVSWVKDGKPLDHYDVPIIAL---ISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVL  238 (1281)
T ss_pred             CcceeecCCCccccccceeEEE---ecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceee
Confidence            7899999999887411222221   24677999999999999999999998877766   4554                


Q ss_pred             -----------ecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 -----------SVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 -----------~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                                 .|.|.|++.|.+++.            ..+|.|.++...|.|+|.|.+.|..|..+....++|.
T Consensus       239 ~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~  313 (1281)
T KOG4222|consen  239 VGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQ  313 (1281)
T ss_pred             cccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEe
Confidence                       568888888887552            2478889999999999999999999998887777774

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.45  E-value=1.7e-12  Score=66.41  Aligned_cols=58  Identities=21%  Similarity=0.261  Sum_probs=45.2

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEe-CCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETR-GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY   59 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   59 (115)
                      .|.|+|+|++..+... ..++.+... .....|.|.+++.+|+|.|+|.+.|..|...+.
T Consensus        12 ~P~v~W~k~~~~i~~~-~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   70 (75)
T cd05744          12 PPQIFWKKNNEMLTYN-TDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCN   70 (75)
T ss_pred             CCeEEEEECCEECCCC-CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEE
Confidence            4899999999988742 345544322 234579999999999999999999999888773

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.45  E-value=1.3e-12  Score=66.79  Aligned_cols=57  Identities=21%  Similarity=0.275  Sum_probs=44.5

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeC-CeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRG-NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+|++.++... ..++...... ....|.|.++..+|+|.|+|.+.|..|....
T Consensus        12 ~P~v~W~k~~~~l~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~   69 (75)
T cd05893          12 HPQIFWKKENESLTHN-TDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSC   69 (75)
T ss_pred             CCEEEEEECCEECCCC-CCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            4899999999988641 3455543322 2347999999999999999999999988877

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.44  E-value=1.5e-12  Score=65.12  Aligned_cols=54  Identities=22%  Similarity=0.286  Sum_probs=45.4

Q ss_pred             EEEecccCCcEEEEEeCC-------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          60 MELSVSVSDRRLMETRGN-------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        60 ~~v~g~~~~~~~~~~~~~-------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      ..+.|.|.|.+.|.+++.       ...|.|.++..+|+|.|+|.|.|..|..++.+.+.+
T Consensus         5 c~v~g~P~P~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l   65 (67)
T cd05863           5 VKVAAYPPPEFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL   65 (67)
T ss_pred             EEEEEeCCCEEEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence            345899999999998763       347999999999999999999999998777666654

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.42  E-value=2.2e-12  Score=64.92  Aligned_cols=56  Identities=29%  Similarity=0.484  Sum_probs=45.1

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME   61 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~   61 (115)
                      .|.|+|+|++.++..  ..++.+   .....|.|.++..+|+|.|.|.+.|..|.....+.
T Consensus        12 ~p~i~W~k~g~~~~~--~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   67 (69)
T cd05746          12 EPTITWNKDGVQVTE--SGKFHI---SPEGYLAIRDVGVADQGRYECVARNTIGYASVSMV   67 (69)
T ss_pred             CCEEEEEECCEECCC--CCCEEE---CCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEE
Confidence            478999999988865  555443   23568999999999999999999999988876443

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.42  E-value=1.6e-12  Score=66.17  Aligned_cols=54  Identities=31%  Similarity=0.497  Sum_probs=44.3

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY   59 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   59 (115)
                      .|.|+|+|++..+..  ..++.+.   ....|.|.++..+|.|.|.|.+.|..+.....
T Consensus        15 ~p~v~W~k~~~~l~~--~~r~~~~---~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   68 (73)
T cd05852          15 KPKFSWSKGTELLVN--NSRISIW---DDGSLEILNITKLDEGSYTCFAENNRGKANST   68 (73)
T ss_pred             CCEEEEEeCCEeccc--CCCEEEc---CCCEEEECcCChhHCEEEEEEEECCCCceeEE
Confidence            378999999987765  5665542   34579999999999999999999999888773

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.42  E-value=2.7e-12  Score=69.18  Aligned_cols=57  Identities=12%  Similarity=0.219  Sum_probs=43.8

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEe-----CCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETR-----GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY   59 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   59 (115)
                      .|.|.|+|||.++..  .........     .....|.|..+.++|+|.|+|.+.|..|.....
T Consensus        33 ~p~v~W~Kdg~~i~~--~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t   94 (101)
T cd04975          33 PPHINWTYDNRTLTN--KLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLT   94 (101)
T ss_pred             CCccEEEeCCeeCCC--CcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEE
Confidence            368999999999975  333222211     125789999999999999999999999887763

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.40  E-value=2e-12  Score=65.46  Aligned_cols=52  Identities=35%  Similarity=0.606  Sum_probs=42.4

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.++|+|+|.++..  ..++    ......|.|.++..+|+|.|+|.+.|..+....
T Consensus        12 ~p~v~W~k~g~~l~~--~~~~----~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~   63 (71)
T cd04976          12 PPEIQWYKNGKLISE--KNRT----KKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEK   63 (71)
T ss_pred             CCEEEEEECCEECCC--CCEE----EcCCCEEEECcCCHHHCEEEEEEEEcCCccEEE
Confidence            478999999998876  4332    234578999999999999999999998877655

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.40  E-value=4.3e-12  Score=65.35  Aligned_cols=56  Identities=29%  Similarity=0.426  Sum_probs=46.6

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|++++..+..  ..++.+........|.|.++..+|+|.|.|.+.|..|....
T Consensus        15 ~p~v~W~~~~~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   70 (78)
T cd05743          15 TPIINWRLNWGHVPD--SARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFG   70 (78)
T ss_pred             CCEEEEEECCeECCC--CCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEe
Confidence            479999999988876  56666555556688999999999999999999998887765

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.40  E-value=3.3e-12  Score=65.15  Aligned_cols=59  Identities=20%  Similarity=0.442  Sum_probs=45.2

Q ss_pred             CcceEEEECCEEeCCCCCCCE---EEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRR---LMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME   61 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~---~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~   61 (115)
                      .|.+.|+|++.++..  ..+.   ..........|.|.++..+|.|.|.|.+.|..|.....+.
T Consensus        13 ~p~~~W~k~g~~l~~--~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750          13 SLRFKWFKDGKELNR--KNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CceEEEEcCCeeccc--cCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            378999999998875  3322   2323345678999999999999999999999988766543

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.40  E-value=2.9e-12  Score=66.87  Aligned_cols=64  Identities=16%  Similarity=0.275  Sum_probs=46.8

Q ss_pred             cceEEEECCEEeCCC-CCCCEEEEE-eCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEecc
Q psy3272           2 GMMSWYQDTFLIEPS-VSDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSVS   65 (115)
Q Consensus         2 p~v~W~~~~~~~~~~-~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g~   65 (115)
                      +.|.|+|||.+|... ...++.... ......|.|.+++..|+|.|+|.+.+..+...+  .|.|.|.
T Consensus        17 ~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~p   84 (85)
T cd05853          17 IVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGP   84 (85)
T ss_pred             cEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEecC
Confidence            578999999999742 123333211 124568999999999999999999998877776  5666544

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.39  E-value=1.8e-12  Score=65.44  Aligned_cols=51  Identities=27%  Similarity=0.410  Sum_probs=41.1

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.++|+|+|.++..  ..++     ..+..|.|.++..+|+|.|+|.+.|..|....
T Consensus        12 ~P~v~W~k~g~~l~~--~~~~-----~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~   62 (70)
T cd05864          12 PPEVKWYKNGQLIVL--NHTF-----KRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQ   62 (70)
T ss_pred             CCEEEEEECCEECCC--CCEE-----ccCCEEEECcCCHHHCEEEEEEEEECCCceee
Confidence            489999999999875  3322     13457999999999999999999999876655

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.39  E-value=3.9e-12  Score=64.85  Aligned_cols=54  Identities=26%  Similarity=0.418  Sum_probs=43.8

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY   59 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   59 (115)
                      .|.|+|+|++..+..  ..++..   .....|.|.++..+|+|.|.|.+.|..|.....
T Consensus        16 ~p~i~W~k~g~~~~~--~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   69 (74)
T cd05745          16 QPVIAWTKGGSQLSV--DRRHLV---LSSGTLRISRVALHDQGQYECQAVNIVGSQRTV   69 (74)
T ss_pred             CCEEEEEECCEECCC--CCCeEE---ccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEE
Confidence            479999999998876  444433   234589999999999999999999998887763

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.38  E-value=1.2e-11  Score=65.61  Aligned_cols=59  Identities=27%  Similarity=0.482  Sum_probs=48.3

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME   61 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~   61 (115)
                      .|.+.|+|++..+..  ..++.+........|.|.++..+|.|.|.|.+.|..|.....+.
T Consensus        32 ~p~v~W~k~g~~l~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   90 (92)
T cd05747          32 APTVTWMREGQIIVS--SQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFT   90 (92)
T ss_pred             CCEEEEEECCEECCC--CCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEE
Confidence            378999999998876  56666655555789999999999999999999999988776443

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.38  E-value=7.1e-12  Score=63.42  Aligned_cols=55  Identities=24%  Similarity=0.500  Sum_probs=43.2

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM   60 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~   60 (115)
                      .|.|+|+|++..+..  ..++...   ....|.|.++..+|+|.|.|.+.|..|.....+
T Consensus        13 ~p~v~W~k~g~~~~~--~~~~~~~---~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~   67 (71)
T cd05723          13 TPTVKWVKNGDMVIP--SDYFKIV---KEHNLQVLGLVKSDEGFYQCIAENDVGNVQASA   67 (71)
T ss_pred             CCEEEEEECCeECCC--CCCEEEE---ecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEE
Confidence            479999999988765  5554432   234578889999999999999999998887743

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.37  E-value=1.1e-11  Score=65.36  Aligned_cols=58  Identities=36%  Similarity=0.629  Sum_probs=51.4

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM   60 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~   60 (115)
                      .|.|.|++++..+..  ..++..........|.|.++..+|+|.|.|.+.+..+.....+
T Consensus        29 ~~~v~W~~~~~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~   86 (90)
T PF07679_consen   29 PPTVTWYKNGRPLTS--SQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASV   86 (90)
T ss_dssp             SSEEEEEETTEEEES--SSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEE
T ss_pred             CCcccccccccceee--eeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEE
Confidence            368999999999988  8888888778899999999999999999999999988777633

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.37  E-value=1.2e-11  Score=63.48  Aligned_cols=55  Identities=22%  Similarity=0.424  Sum_probs=41.9

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+|+|.++... ..++..  ......|.|.++..+|+|.|.|.+.|..|...+
T Consensus        12 ~p~v~W~k~g~~l~~~-~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   66 (77)
T cd05760          12 RPTYQWFRDGTPLSDG-QGNYSV--SSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCS   66 (77)
T ss_pred             CCcEEEEECCEECCCC-CccEEE--eCCCCEEEEeeCCcccCEEEEEEEEeCCCeEee
Confidence            3789999999988651 123332  233468999999999999999999998887643

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.37  E-value=1.1e-11  Score=63.45  Aligned_cols=60  Identities=17%  Similarity=0.372  Sum_probs=45.0

Q ss_pred             cceEEEECCEEeCCC--CCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEE
Q psy3272           2 GMMSWYQDTFLIEPS--VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME   61 (115)
Q Consensus         2 p~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~   61 (115)
                      |.++||+++.++...  ...++..........|.|.++..+|+|.|.|.+.+..+....+++
T Consensus        14 ~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895          14 LRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            578999999988642  122233333345678999999999999999999999887776554

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.36  E-value=7.4e-12  Score=67.50  Aligned_cols=56  Identities=14%  Similarity=0.202  Sum_probs=43.0

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEE------eCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMET------RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|.|+|+|.++..  ........      ......|.|.++..+|+|.|+|.+.|..+....
T Consensus        32 ~P~v~W~kdg~~l~~--~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~   93 (101)
T cd05859          32 PPQIRWLKDNRTLIE--NLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSY   93 (101)
T ss_pred             CCceEEEECCEECcC--CcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEE
Confidence            478999999999875  33322111      122468999999999999999999999888766

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.36  E-value=1.3e-11  Score=63.24  Aligned_cols=56  Identities=27%  Similarity=0.526  Sum_probs=43.6

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|.|+|++..+..  ..............|.|.++..+|.|.|.|.+.|..|....
T Consensus        12 ~p~v~W~k~~~~l~~--~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~   67 (76)
T cd05736          12 LPRLTWLKNGMDITP--KLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDED   67 (76)
T ss_pred             CCEEEEEECCEECCC--CCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcce
Confidence            378999999998765  33222223345568999999999999999999998887776

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.35  E-value=1.4e-11  Score=63.00  Aligned_cols=51  Identities=29%  Similarity=0.293  Sum_probs=42.8

Q ss_pred             ecccCCcEEEEEeCC-----------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          63 SVSVSDRRLMETRGN-----------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~-----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      .|.|.|.+.|.+++.                 ...|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         8 ~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           8 SAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             EecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            678888888876441                 126999999999999999999999999999888865

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>KOG4221|consensus

Probab=99.35  E-value=3.7e-12  Score=90.45  Aligned_cols=107  Identities=24%  Similarity=0.330  Sum_probs=82.9

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeec--CCcceeEEEEE----------------
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN--NLGRAKKYMEL----------------   62 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~--~~~~~~~~~~v----------------   62 (115)
                      .|.|.|.||+..+..  .+ +.+ .......|.|.+++..|+|.|+|++.+  ....+.+.|+|                
T Consensus       266 ~p~v~Wlrng~~i~~--ds-~ri-vl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~  341 (1381)
T KOG4221|consen  266 KPSVKWLRNGEKISV--DS-YRI-VLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAH  341 (1381)
T ss_pred             CCceEEeeCCeeeee--cc-eEE-EEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeee
Confidence            489999999999987  33 332 223567899999999999999999998  34444446666                


Q ss_pred             -----------ecccCCcEEEEEeCCe------------EEEEEeccCCCCCeeeEEEeecCccceeeEEEE
Q psy3272          63 -----------SVSVSDRRLMETRGNK------------HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL  111 (115)
Q Consensus        63 -----------~g~~~~~~~~~~~~~~------------~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l  111 (115)
                                 .|.|.+.+.|.+++..            ..|.|..+-..|.|.|.|.+.|..|.....+.|
T Consensus       342 e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l  413 (1381)
T KOG4221|consen  342 ESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQL  413 (1381)
T ss_pred             eccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCcccccchhhh
Confidence                       5688999999987632            137778888899999999999999997665555

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.34  E-value=2.2e-11  Score=63.72  Aligned_cols=63  Identities=24%  Similarity=0.380  Sum_probs=45.9

Q ss_pred             ceEEEECCEEeCCCC-CCCEE-EEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEecc
Q psy3272           3 MMSWYQDTFLIEPSV-SDRRL-METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSVS   65 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~-~~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g~   65 (115)
                      .|+|++++.++.... ..++. .........|.|.+++..|+|.|+|.+.+..+...+  .|.|.|.
T Consensus        18 ~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~   84 (85)
T cd05854          18 TFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGP   84 (85)
T ss_pred             EEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEECC
Confidence            589999999886421 22332 222234568999999999999999999999988877  5666553

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.34  E-value=1.8e-11  Score=62.58  Aligned_cols=52  Identities=19%  Similarity=0.169  Sum_probs=43.8

Q ss_pred             EecccCCcEEEEEeCC-----------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          62 LSVSVSDRRLMETRGN-----------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        62 v~g~~~~~~~~~~~~~-----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      +.|.|.|.+.|.+++.                 ...|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus         7 v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           7 VSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             EeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            3788899888887531                 125899999999999999999999999998888865

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.34  E-value=4.1e-11  Score=63.31  Aligned_cols=58  Identities=19%  Similarity=0.367  Sum_probs=45.5

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM   60 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~   60 (115)
                      .|.|.|++++..+..  ..............|.|.++..+|.|.|.|.+.|..|.....+
T Consensus        29 ~p~v~W~~~g~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~   86 (90)
T cd04972          29 LPKVEWIIAGLIVIQ--TRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSV   86 (90)
T ss_pred             CCeEEEEECCEEccC--CccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEE
Confidence            489999999988765  3333333344567899999999999999999999998877643

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.33  E-value=4.2e-11  Score=63.02  Aligned_cols=65  Identities=25%  Similarity=0.385  Sum_probs=48.6

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEe----CCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEecccC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETR----GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSVSVS   67 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g~~~   67 (115)
                      |.|+|+|++..+... ..++.+...    .....|.|.++..+|+|.|+|.+.|..|....  .|.|...|.
T Consensus        16 ~~i~W~k~~~~i~~~-~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P~   86 (88)
T cd05735          16 IIVRWEKEDRIINPE-MSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPD   86 (88)
T ss_pred             CEEEEeeCCEECCCC-CCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCCC
Confidence            689999999888652 245554321    22367999999999999999999999998887  555555443

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.33  E-value=1.6e-11  Score=63.07  Aligned_cols=56  Identities=29%  Similarity=0.462  Sum_probs=40.7

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCC----CCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQS----TDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+|++.++......++.  .......|.|..+..    +|+|.|.|.+.|..|...+
T Consensus        12 ~P~v~W~k~g~~l~~~~~~~~~--~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733          12 PPTFSWTRNGTHFDPEKDPRVT--MKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CCeEEEEECCeECCCCCCCCEE--EeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            4899999999988642123332  233456788887743    6899999999999987765

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.33  E-value=1.7e-11  Score=62.81  Aligned_cols=55  Identities=24%  Similarity=0.317  Sum_probs=42.0

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+|+|.++...+......   ..+..|.|.++..+|.|.|.|.+.|..|...+
T Consensus        15 ~P~i~W~k~g~~i~~~~~~~~~~---~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~   69 (76)
T cd05868          15 KPSISWLTNGVPIEIAPTDPSRK---VDGDTIIFSKVQERSSAVYQCNASNEYGYLLA   69 (76)
T ss_pred             CCeEEEEECCEEccccCCCceEE---ecCCEEEECCCCHhhCEEEEEEEEcCCCEEEE
Confidence            48999999999886421222111   12357889999999999999999999988887

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.33  E-value=2.2e-11  Score=62.10  Aligned_cols=55  Identities=25%  Similarity=0.484  Sum_probs=41.8

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+|++.++......++..   .....|.|.++..+|+|.|.|.+.|..|...+
T Consensus        12 ~p~v~W~k~~~~~~~~~~~~~~~---~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s   66 (74)
T cd05738          12 DPEITWFKDFLPVDTTSNGRIKQ---LRSGALQIENSEESDQGKYECVATNSAGTRYS   66 (74)
T ss_pred             CCEEEEEECCEECccCCCCCEEE---cCCcEEEECCCChhhCEEEEEEEECCCCceEc
Confidence            37899999999886422444433   23456999999999999999999998877543

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.33  E-value=1.7e-11  Score=63.10  Aligned_cols=53  Identities=19%  Similarity=0.218  Sum_probs=44.8

Q ss_pred             EEEecccCCcEEEEEeCC--------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEE
Q psy3272          60 MELSVSVSDRRLMETRGN--------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS  112 (115)
Q Consensus        60 ~~v~g~~~~~~~~~~~~~--------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~  112 (115)
                      ..|.|.|.|.+.|++++.                    ..+|.|.++..+|+|.|+|.|.|..|...+++.+.
T Consensus         5 ~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           5 FTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            456899999999988651                    13689999999999999999999999988887664

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.33  E-value=2.4e-11  Score=62.21  Aligned_cols=54  Identities=26%  Similarity=0.387  Sum_probs=41.7

Q ss_pred             CcceEEEECCEEeCCCCC-CCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVS-DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+|+|.++..... .++..    ....|.|.++..+|+|.|.|.+.|..|....
T Consensus        15 ~p~i~W~k~g~~i~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   69 (76)
T cd05867          15 TPNITWSINGAPIEGTDPDPRRHV----SSGALILTDVQPSDTAVYQCEARNRHGNLLA   69 (76)
T ss_pred             CCeEEEEECCEECCCCCCCceEEe----eCCEEEECCCChhhCEEEEEEEECCCCeEEE
Confidence            378999999998865211 12222    2457999999999999999999999888776

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.32  E-value=1.8e-11  Score=62.54  Aligned_cols=55  Identities=27%  Similarity=0.328  Sum_probs=42.8

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|.|++++.++..  .... .........|.|.+++.+|.|.|.|.+.|..|...+
T Consensus        15 ~p~i~W~~~g~~~~~--~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~   69 (76)
T cd04978          15 QPTITWRLNGVPIEE--LPPD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLA   69 (76)
T ss_pred             CCEEEEEECCEECCC--CCCc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEE
Confidence            378999999998865  3221 112234578999999999999999999999888776

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.32  E-value=1.9e-11  Score=62.44  Aligned_cols=56  Identities=23%  Similarity=0.329  Sum_probs=40.4

Q ss_pred             CcceEEEECCEEe-CCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLI-EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+|++... +.....++..  ......|.|.++..+|+|.|.|.+.|..|....
T Consensus        12 ~P~v~W~k~~~~~~~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~   68 (75)
T cd05763          12 TPQIAWQKDGGTDFPAARERRMHV--MPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISA   68 (75)
T ss_pred             CCEEEEEeCCCccCCcccccceEE--ecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEe
Confidence            3789999998642 2211233332  233457999999999999999999999887766

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.32  E-value=1.8e-11  Score=62.20  Aligned_cols=55  Identities=33%  Similarity=0.483  Sum_probs=44.4

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM   60 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~   60 (115)
                      .|.++|+|++..+..  ..++...   ....|.|.++..+|+|.|.|.+.|..+.....+
T Consensus        15 ~p~v~W~k~~~~~~~--~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~   69 (73)
T cd04969          15 KPTISWSKGTELLTN--SSRICIW---PDGSLEILNVTKSDEGKYTCFAENFFGKANSTG   69 (73)
T ss_pred             CCEEEEEECCEEccc--CCCEEEC---CCCeEEEccCChhHCEEEEEEEECCCCceEEEE
Confidence            378999999998866  5555432   345799999999999999999999998887743

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.31  E-value=2e-11  Score=62.23  Aligned_cols=51  Identities=25%  Similarity=0.296  Sum_probs=43.5

Q ss_pred             ecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          63 SVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      .|.|.|.+.|.+++.            ...|.|.++..+|.|.|+|.|.|..|..+..+.|.|
T Consensus        12 ~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745          12 QGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            778888888877542            236999999999999999999999999998888865

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.31  E-value=1.7e-11  Score=62.05  Aligned_cols=55  Identities=27%  Similarity=0.431  Sum_probs=42.9

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM   60 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~   60 (115)
                      .|.|.|+|++.++..  ... .  .......|.|.++..+|+|.|.|.+.|..|.....+
T Consensus        12 ~P~v~W~k~~~~~~~--~~~-~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   66 (71)
T cd05876          12 TPEVHWDRIDGPLSP--NRT-K--KLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHY   66 (71)
T ss_pred             CCeEEEEECCcCCCC--Cce-e--EEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEE
Confidence            479999999887654  221 1  223567899999999999999999999998877743

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.31  E-value=2.9e-11  Score=61.16  Aligned_cols=51  Identities=24%  Similarity=0.344  Sum_probs=44.1

Q ss_pred             ecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          63 SVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      .|.|.|.+.|.+++.            ...|.|.++..+|.|.|+|.|.|..|..+..+.|.|
T Consensus         8 ~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           8 EGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             eEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            788899999887541            247999999999999999999999999998888876

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.31  E-value=2.9e-11  Score=64.06  Aligned_cols=53  Identities=28%  Similarity=0.545  Sum_probs=42.0

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+|++..+..  . ++.+  ......|.|.++..+|+|.|.|.+.|..|...+
T Consensus        31 ~p~i~W~kng~~l~~--~-~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S   83 (91)
T cd05740          31 ATYIWWVNNGSLLVP--P-RLQL--SNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTS   83 (91)
T ss_pred             CCEEEEEECCEECCC--C-CEEE--eCCCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence            488999999988764  2 3332  234568999999999999999999999987655

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.31  E-value=3.2e-11  Score=62.51  Aligned_cols=53  Identities=21%  Similarity=0.266  Sum_probs=44.6

Q ss_pred             EEEecccCCcEEEEEeCC----------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEE
Q psy3272          60 MELSVSVSDRRLMETRGN----------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS  112 (115)
Q Consensus        60 ~~v~g~~~~~~~~~~~~~----------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~  112 (115)
                      +.|.|.|.|.+.|.+++.                      ...|.|.++.++|+|.|+|.|.|..|..++.+.+.
T Consensus         5 ~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           5 FTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             EEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            455899999999988652                      12599999999999999999999999988887764

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.30  E-value=6.9e-11  Score=61.69  Aligned_cols=58  Identities=24%  Similarity=0.465  Sum_probs=43.7

Q ss_pred             CcceEEEECCEEeCCCCCCCEE-EEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRL-METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM   60 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~   60 (115)
                      .|.|+|+|+|.++..  ..+.. .........|.|.++..+|+|.|.|.+.|..|.....+
T Consensus        23 ~p~i~W~k~g~~l~~--~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   81 (85)
T cd05857          23 TPTMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY   81 (85)
T ss_pred             CCEEEEEECCEECCC--CCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEE
Confidence            368999999998875  33321 11123456799999999999999999999998877643

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.30  E-value=4.3e-11  Score=64.52  Aligned_cols=53  Identities=13%  Similarity=0.087  Sum_probs=45.3

Q ss_pred             EecccCCcEEEEEeCC---------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          62 LSVSVSDRRLMETRGN---------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        62 v~g~~~~~~~~~~~~~---------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      +.|.|.|.+.|.+++.                     ...|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus        27 v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~  100 (101)
T cd05859          27 VEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ  100 (101)
T ss_pred             EEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence            3888999999987652                     1369999999999999999999999999888888774

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.30  E-value=4.3e-11  Score=60.94  Aligned_cols=53  Identities=21%  Similarity=0.305  Sum_probs=44.5

Q ss_pred             EEecccCCcEEEEEeCC---------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          61 ELSVSVSDRRLMETRGN---------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        61 ~v~g~~~~~~~~~~~~~---------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      .+.|.|.|.+.|.+++.               ...|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus         7 ~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           7 PISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             eEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            34788888888877542               347999999999999999999999999998888865

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.30  E-value=3.3e-11  Score=63.92  Aligned_cols=52  Identities=29%  Similarity=0.544  Sum_probs=41.2

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|.|||++.++..  ..+...    .+..|.|.++..+|+|.|+|.+.+..+....
T Consensus        29 ~p~i~Wyk~~~~i~~--~~~~~~----~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~   80 (92)
T cd05757          29 LPPVQWYKDCKLLEG--DRKRFV----KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQY   80 (92)
T ss_pred             CCcEEEeECCEECCC--CccEEe----cCCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence            368999999999876  443221    5678999999999999999999987655544

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.30  E-value=4.9e-11  Score=61.27  Aligned_cols=56  Identities=23%  Similarity=0.309  Sum_probs=39.5

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCC----CCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQS----TDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|+|+|+|++.++......++.  .......|.|..+..    .|.|.|.|.+.|..|...+
T Consensus        12 ~P~i~W~k~g~~l~~~~~~~~~--~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874          12 PPSFSWTRNGTHFDIDKDPKVT--MKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CCeEEEEECCeECCCcCCCCEE--EeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            4899999999987542123332  223455677776654    3789999999999988776

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.30  E-value=2.1e-11  Score=62.94  Aligned_cols=53  Identities=23%  Similarity=0.500  Sum_probs=42.1

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM   60 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~   60 (115)
                      |.|.|+|+|.++..  ..++.+.    ...|.|.++..+|+|.|.|.+.+..+.....+
T Consensus        23 ~~v~W~k~g~~l~~--~~~~~~~----~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~   75 (79)
T cd04973          23 QSINWTKDGVQLGE--NNRTRIT----GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYF   75 (79)
T ss_pred             ceEEEeeCCcCCCC--CceEEEe----CCEEEECCCChhhCEEEEEEEeCCCCcccEEE
Confidence            67999999998876  5555432    34799999999999999999998877665533

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.29  E-value=3.7e-11  Score=63.51  Aligned_cols=35  Identities=34%  Similarity=0.604  Sum_probs=32.3

Q ss_pred             EEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        80 ~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .|.|.++..+|.|.|+|.|.|..|.....+.|.|.
T Consensus        56 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V~   90 (90)
T cd04974          56 VLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTVL   90 (90)
T ss_pred             eEEEeccccccCcEEEEEeecccCcccCCEEEEeC
Confidence            68999999999999999999999999988888873

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.29  E-value=2.5e-11  Score=61.20  Aligned_cols=53  Identities=21%  Similarity=0.206  Sum_probs=43.1

Q ss_pred             EEecccCCcEEEEEeCC----------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          61 ELSVSVSDRRLMETRGN----------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        61 ~v~g~~~~~~~~~~~~~----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      .+.|.|.|.+.|.+++.          ...|.|.++..+|.|.|+|.|.|..|..+....+.+
T Consensus         6 ~v~G~P~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           6 KYYGYPPPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             EEEEeCCCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            44899999999998752          237999999999999999999999997666544443

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.29  E-value=7.3e-11  Score=62.57  Aligned_cols=55  Identities=29%  Similarity=0.524  Sum_probs=43.4

Q ss_pred             cceEEEE-CCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           2 GMMSWYQ-DTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         2 p~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      +.++|++ ++.++..  ..++..........|.|.++..+|+|.|+|.+.|..|....
T Consensus        29 ~~v~W~k~~g~~~~~--~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~   84 (92)
T cd05866          29 ESIDWYNPQGEKIVS--SQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQE   84 (92)
T ss_pred             CeEEEEeCCCeEecC--CCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEE
Confidence            3789998 4666655  66776654555678999999999999999999998877644

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.29  E-value=6.6e-11  Score=62.78  Aligned_cols=60  Identities=27%  Similarity=0.346  Sum_probs=46.8

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeC-CeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRG-NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL   62 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v   62 (115)
                      .|.+.||+++..+..  ..++...... ....|.|.++..+|+|.|.|.+.|..|.....+.|
T Consensus        30 ~p~i~W~k~~~~~~~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v   90 (92)
T cd05891          30 DPEVIWFKNDQDIEL--SEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTV   90 (92)
T ss_pred             CCeEEEEECCEECCC--CCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEE
Confidence            478999999998876  5555443322 23579999999999999999999999888875543

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.28  E-value=3.9e-11  Score=60.70  Aligned_cols=53  Identities=26%  Similarity=0.384  Sum_probs=44.0

Q ss_pred             EEecccCCcEEEEEeCC-----------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          61 ELSVSVSDRRLMETRGN-----------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        61 ~v~g~~~~~~~~~~~~~-----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      .+.|.|.|.+.|.+++.           ...|.|.++..+|+|.|+|.|.|..|..+..+.+.+
T Consensus         6 ~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~   69 (71)
T cd04976           6 KVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL   69 (71)
T ss_pred             EEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence            44789999999988652           247999999999999999999999998777666654

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.28  E-value=2.2e-11  Score=64.13  Aligned_cols=52  Identities=25%  Similarity=0.376  Sum_probs=41.8

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+|++.++..  ..++.    ..+..|.|.++..+|+|.|.|.+.|..|....
T Consensus        30 ~P~v~W~k~~~~~~~--~~~~~----~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~   81 (88)
T cd05851          30 VPVIRWRKILEPMPA--TAEIS----MSGAVLKIFNIQPEDEGTYECEAENIKGKDKH   81 (88)
T ss_pred             CCEEEEEECCcCCCC--CCEEe----cCCCEEEECcCChhhCEEEEEEEEcCCCceEE
Confidence            479999999987765  33322    23457999999999999999999999988776

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.28  E-value=4.6e-11  Score=60.42  Aligned_cols=51  Identities=22%  Similarity=0.399  Sum_probs=43.0

Q ss_pred             ecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          63 SVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      .|.|.|.+.|.+++.            ...|.|.++..+|.|.|+|.|.|..|..+..+.|.|
T Consensus         9 ~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           9 TGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             EEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            788888888887652            125888899999999999999999999999888865

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.28  E-value=8.5e-11  Score=60.36  Aligned_cols=56  Identities=29%  Similarity=0.410  Sum_probs=40.4

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCC----CCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQ----STDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+|++.++......++..  ......|.|..+.    .+|+|.|.|.+.|..|...+
T Consensus        12 ~P~v~W~k~g~~~~~~~~~~~~~--~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875          12 VPTFQWTRNGKFFNVAKDPRVSM--RRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             CCEEEEEECCEEccCcCCCcEEE--eCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            48999999999775422444443  2345678887653    24689999999999988776

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.28  E-value=6.6e-11  Score=60.48  Aligned_cols=52  Identities=21%  Similarity=0.230  Sum_probs=42.5

Q ss_pred             EecccCCcEEEEEeCC-----------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          62 LSVSVSDRRLMETRGN-----------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        62 v~g~~~~~~~~~~~~~-----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      +.|.|.|.+.|.+++.                 ...|.|.++..+|.|.|+|.|.|..|.....+.|.|
T Consensus         7 v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           7 VSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             EeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            3677888888776441                 125999999999999999999999999998888765

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.28  E-value=4e-11  Score=60.98  Aligned_cols=51  Identities=27%  Similarity=0.366  Sum_probs=42.4

Q ss_pred             ecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          63 SVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      .|.|.|.+.|.+++.            ...|.|.++..+|.|.|+|.|.|..|....++.|.|
T Consensus        11 ~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852          11 KAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             ceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            677777777776542            237999999999999999999999999998888865

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.27  E-value=7.4e-11  Score=60.43  Aligned_cols=52  Identities=21%  Similarity=0.179  Sum_probs=43.4

Q ss_pred             ecccCCcEEEEEeCC--------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 SVSVSDRRLMETRGN--------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~--------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .|.|.|.+.|.+++.              ...|.|.++..+|.|.|.|.|.|..|.....+.|.|+
T Consensus        11 ~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~   76 (76)
T cd05868          11 NGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL   76 (76)
T ss_pred             eEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence            677788888876542              1268899999999999999999999999999998874

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.27  E-value=9.8e-11  Score=61.37  Aligned_cols=51  Identities=14%  Similarity=0.165  Sum_probs=43.0

Q ss_pred             ecccCCcEEEEEeC----------------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          63 SVSVSDRRLMETRG----------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        63 ~g~~~~~~~~~~~~----------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      .|.|.|.+.|.+++                ....|.|.++.++|+|.|+|.|.|..|.....+.|.|
T Consensus        20 ~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V   86 (86)
T cd05894          20 SGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV   86 (86)
T ss_pred             eecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence            77788888886643                1357999999999999999999999999998888865

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.27  E-value=4.3e-11  Score=60.14  Aligned_cols=53  Identities=25%  Similarity=0.480  Sum_probs=41.5

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY   59 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   59 (115)
                      .|.+.|+|++..++.   .++...   ....|.|.++..+|+|.|.|.+.|..|.....
T Consensus        12 ~p~v~W~k~~~~~~~---~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   64 (69)
T cd05725          12 VPTVLWRKEDGELPK---GRAEIL---DDKSLKIRNVTAGDEGSYTCEAENMVGKIEAS   64 (69)
T ss_pred             CCEEEEEECCccCCC---CcEEEe---eCCEEEECcCChhHCEEEEEEEEcCCCcEEEE
Confidence            478999999876654   333332   34579999999999999999999998887763

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.26  E-value=1e-10  Score=62.73  Aligned_cols=53  Identities=21%  Similarity=0.230  Sum_probs=44.1

Q ss_pred             ecccCCcEEEEEeC---------------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEeC
Q psy3272          63 SVSVSDRRLMETRG---------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE  115 (115)
Q Consensus        63 ~g~~~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~~  115 (115)
                      .|.|.+.+.|.+++               ....|.|.++..+|+|.|+|.+.|..|.....+.|.|.+
T Consensus        25 ~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~   92 (98)
T cd05762          25 TGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVD   92 (98)
T ss_pred             cccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEec
Confidence            56667777776543               345799999999999999999999999999999998864

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.26  E-value=4e-11  Score=60.70  Aligned_cols=51  Identities=20%  Similarity=0.266  Sum_probs=38.5

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcce
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA   56 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~   56 (115)
                      .|.+.|+|++.++... ..++..    .+..|.|.++..+|+|.|+|.+.+.....
T Consensus        12 ~P~v~W~kdg~~l~~~-~~~~~~----~~~~L~I~~v~~~D~G~YtC~a~~~~~~~   62 (72)
T cd07702          12 APEVIWLKDGLPAAEK-CSRYHV----DGYSLVIKDVTEEDAGIYTILLGIKQYNL   62 (72)
T ss_pred             CCeEEEEECCEECCCC-CcEEEe----CCCEEEECcCCHHHCEEEEEEEEccccce
Confidence            4899999999988651 133322    34579999999999999999999864433

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.25  E-value=5.5e-11  Score=59.74  Aligned_cols=51  Identities=25%  Similarity=0.414  Sum_probs=42.8

Q ss_pred             ecccCCcEEEEEeCC-----------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          63 SVSVSDRRLMETRGN-----------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~-----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      .|.|.|.+.|.+++.           ...|.|.++..+|.|.|+|.|.|..|.....+.|.|
T Consensus         8 ~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           8 GGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             ccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            677788888877542           237999999999999999999999999888888765

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.25  E-value=5e-11  Score=60.12  Aligned_cols=54  Identities=31%  Similarity=0.447  Sum_probs=41.9

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY   59 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   59 (115)
                      .|.+.|+|++.++..  . +..  .......|.|.++..+|+|.|.|.+.|..+.....
T Consensus        12 ~p~v~W~k~~~~~~~--~-~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   65 (71)
T cd05731          12 TPEISWIKIGGELPA--D-RTK--FENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHT   65 (71)
T ss_pred             CCeEEEEECCeECCC--C-cee--EecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEE
Confidence            478999999887754  2 211  22345689999999999999999999998877663

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.25  E-value=9.2e-11  Score=62.78  Aligned_cols=59  Identities=25%  Similarity=0.469  Sum_probs=43.4

Q ss_pred             CcceEEEECCEEeCCCC---CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272           1 MGMMSWYQDTFLIEPSV---SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY   59 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   59 (115)
                      .|.|+|++++..+....   ..++.+........|.|.++..+|.|.|.|.+.|..|.....
T Consensus        31 ~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   92 (97)
T cd05869          31 IPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQS   92 (97)
T ss_pred             CCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEE
Confidence            47999999987765310   122333223345789999999999999999999999888773

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.25  E-value=1.1e-10  Score=62.25  Aligned_cols=55  Identities=25%  Similarity=0.460  Sum_probs=43.2

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+++|..+... ..++.  .......|.|.++..+|.|.|.|.+.|..|....
T Consensus        32 ~p~v~W~k~g~~~~~~-~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   86 (95)
T cd05730          32 EPTMTWTKDGEPIESG-EEKYS--FNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEA   86 (95)
T ss_pred             CCEEEEEECCEECcCC-CCEEE--EeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEE
Confidence            4789999999988761 13332  2334567999999999999999999999988766

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.25  E-value=7.5e-11  Score=61.67  Aligned_cols=54  Identities=22%  Similarity=0.377  Sum_probs=43.9

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM   60 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~   60 (115)
                      .|.+.|+|++.++..  ..++..    ....|.|.++..+|+|.|.|.+.|..|.....+
T Consensus        28 ~p~v~W~k~g~~~~~--~~~~~~----~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   81 (85)
T cd05728          28 RPAYRWLKNGQPLAS--ENRIEV----EAGDLRITKLSLSDSGMYQCVAENKHGTIYASA   81 (85)
T ss_pred             CCEEEEEECCEECCC--CCeEEE----eCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEE
Confidence            478999999998876  555443    245799999999999999999999998877644

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.25  E-value=9.5e-11  Score=61.25  Aligned_cols=63  Identities=16%  Similarity=0.257  Sum_probs=44.6

Q ss_pred             ceEEEECCEEeCCCC-CCCEEE-EEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEecc
Q psy3272           3 MMSWYQDTFLIEPSV-SDRRLM-ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSVS   65 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~-~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g~   65 (115)
                      .+.|+++|.++.... ..++.. ........|.|.+++..|+|.|+|.+.+..+....  .|.|.|.
T Consensus        18 ~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p   84 (85)
T cd04970          18 TFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGP   84 (85)
T ss_pred             EEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECC
Confidence            569999999886421 122221 12234578999999999999999999998877766  5665553

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.25  E-value=1.1e-10  Score=61.40  Aligned_cols=63  Identities=22%  Similarity=0.196  Sum_probs=51.0

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCC-----------eEEEEEeccCCCCCeeeEEEeecCccceee
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN-----------KHTLTIKNVQSTDFGNYSCVADNNLGRAKK  107 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~-----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~  107 (115)
                      ..+.-.+.|.+             .|.|.|.+.|.+.+.           ...|.|.++..+|.|.|+|.|.|..|....
T Consensus        15 ~G~~v~l~C~~-------------~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~   81 (88)
T cd05851          15 KGQNVTLECFA-------------LGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKDKH   81 (88)
T ss_pred             CCCcEEEEEEe-------------cccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCceEE
Confidence            44556677776             678888888877531           237999999999999999999999999999


Q ss_pred             EEEEEEe
Q psy3272         108 YMELSEL  114 (115)
Q Consensus       108 ~~~l~v~  114 (115)
                      .+.|.|.
T Consensus        82 ~~~l~V~   88 (88)
T cd05851          82 QARVYVQ   88 (88)
T ss_pred             EEEEEEC
Confidence            8888773

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.24  E-value=1.7e-10  Score=62.14  Aligned_cols=53  Identities=13%  Similarity=0.136  Sum_probs=44.1

Q ss_pred             Eec-ccCCcEEEEEeCC--------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          62 LSV-SVSDRRLMETRGN--------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        62 v~g-~~~~~~~~~~~~~--------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      +.| .|+|.+.|.+++.                    ...|.|..+.++|+|.|+|.|.|..|..+..+.|.|.
T Consensus        27 v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V~  100 (101)
T cd04975          27 VEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFELYVN  100 (101)
T ss_pred             EEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEEE
Confidence            377 7777788876541                    2569999999999999999999999999999888874

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.23  E-value=7.5e-11  Score=60.21  Aligned_cols=52  Identities=25%  Similarity=0.361  Sum_probs=43.8

Q ss_pred             ecccCCcEEEEEeCC----------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 SVSVSDRRLMETRGN----------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .|.|.|.+.|.+++.                ...|.|.++..+|+|.|.|.|.|..|.....+.|.|+
T Consensus         8 ~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   75 (75)
T cd05763           8 TGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTVL   75 (75)
T ss_pred             ccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEEC
Confidence            677888888877542                2369999999999999999999999999988888874

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.23  E-value=9.6e-11  Score=59.06  Aligned_cols=51  Identities=29%  Similarity=0.416  Sum_probs=43.4

Q ss_pred             ecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          63 SVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      .|.|.|.+.|.+.+.            ...|.|.++..+|.|.|+|.|.|..|..+..+.|.|
T Consensus         8 ~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           8 EGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             eEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            678888888876542            237999999999999999999999999999888876

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.23  E-value=2.2e-10  Score=59.73  Aligned_cols=64  Identities=23%  Similarity=0.425  Sum_probs=48.2

Q ss_pred             CCCCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC----------------CeEEEEEeccCCCCCeeeEEEeec
Q psy3272          37 VQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG----------------NKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        37 ~~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~----------------~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      +...+.-...|.+             .|.|.|.+.|.+++                ....|.|.++..+|.|.|+|.+.|
T Consensus         6 v~~G~~~~L~C~~-------------~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N   72 (85)
T cd05857           6 VPAANTVKFRCPA-------------AGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN   72 (85)
T ss_pred             cCCCCEEEEEEEc-------------CCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEe
Confidence            3445556677776             45566666666543                123688999999999999999999


Q ss_pred             CccceeeEEEEEE
Q psy3272         101 NLGRAKKYMELSE  113 (115)
Q Consensus       101 ~~~~~~~~~~l~v  113 (115)
                      ..|.....+.|.|
T Consensus        73 ~~G~~~~~~~l~v   85 (85)
T cd05857          73 EYGSINHTYHLDV   85 (85)
T ss_pred             CCCEEEEEEEEEC
Confidence            9999999888865

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.22  E-value=1.9e-10  Score=60.98  Aligned_cols=62  Identities=24%  Similarity=0.240  Sum_probs=47.1

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC----------------CeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG----------------NKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~----------------~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      ..+.-...|.+             .|.|.|.+.|.+++                ....|.|.++..+|+|.|+|.|.|..
T Consensus        15 ~G~~v~L~C~v-------------~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   81 (92)
T cd05737          15 EGKTLNLTCTV-------------FGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKY   81 (92)
T ss_pred             CCCcEEEEEEE-------------EecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECC
Confidence            34455667766             55666666665533                23479999999999999999999999


Q ss_pred             cceeeEEEEEE
Q psy3272         103 GRAKKYMELSE  113 (115)
Q Consensus       103 ~~~~~~~~l~v  113 (115)
                      |..+..+.|.|
T Consensus        82 G~~~~~~~v~v   92 (92)
T cd05737          82 GGETVDVTVSV   92 (92)
T ss_pred             CcceEEEEEeC
Confidence            99988888765

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.22  E-value=2.4e-10  Score=58.51  Aligned_cols=51  Identities=20%  Similarity=0.234  Sum_probs=43.1

Q ss_pred             ecccCCcEEEEEeCC--------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          63 SVSVSDRRLMETRGN--------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~--------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      .|.|.|.+.|.+++.              ...|.|.++..+|+|.|.|.|.|..|.....+.|.|
T Consensus        11 ~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867          11 EGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             eEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            677788888876541              247999999999999999999999999988888877

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.22  E-value=1.8e-10  Score=61.41  Aligned_cols=60  Identities=28%  Similarity=0.507  Sum_probs=43.8

Q ss_pred             CcceEEEECCEEeCCC---CCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272           1 MGMMSWYQDTFLIEPS---VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM   60 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~   60 (115)
                      .|.|.|++++..+...   ...++.+........|.|.++..+|+|.|.|.+.|..|.....+
T Consensus        30 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~   92 (96)
T cd05732          30 IPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSM   92 (96)
T ss_pred             CCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEE
Confidence            3789999998666531   01233333233457899999999999999999999998887644

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.22  E-value=7.7e-11  Score=62.75  Aligned_cols=57  Identities=23%  Similarity=0.279  Sum_probs=40.0

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM   60 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~   60 (115)
                      |.|+|||++.++..........  ...+..|.|.++..+|+|.|.|.+.|..+.....+
T Consensus        34 ~~v~Wyk~~~~~~~~~~~~~r~--~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~   90 (94)
T cd05756          34 LNLTWYKSDGKTPIPTEERSRM--HQQKDLLWFLPAALEDSGLYTCVVRNSTYCMKVSI   90 (94)
T ss_pred             ceEEEEEcCCCCccccccccee--eecCCeEEEccCCcccCeEEEEEEcCCCccEEEEE
Confidence            6899999987643210111111  11346799999999999999999999887776643

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.21  E-value=8.4e-11  Score=62.53  Aligned_cols=54  Identities=22%  Similarity=0.437  Sum_probs=39.5

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      |.|+||||+.++..  ..+... .......|.|.++..+|+|.|+|.+.+..+....
T Consensus        30 ~~v~WYKd~~~l~~--~~~~~~-~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y   83 (95)
T cd05897          30 VELQWYKDSVLLDK--DNEKFY-SLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKY   83 (95)
T ss_pred             CcEEEccCCEECcC--CCcceE-ecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEE
Confidence            68999999998875  332111 1123457999999999999999999987655443

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.21  E-value=2.5e-10  Score=58.59  Aligned_cols=52  Identities=25%  Similarity=0.353  Sum_probs=41.4

Q ss_pred             ecccCCcEEEEEeCC--------------eEEEEEeccCCCCCeeeEEEeecCccce--eeEEEEEEe
Q psy3272          63 SVSVSDRRLMETRGN--------------KHTLTIKNVQSTDFGNYSCVADNNLGRA--KKYMELSEL  114 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~--------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~--~~~~~l~v~  114 (115)
                      .|.|.|.+.|.+++.              ...|.|.++..+|.|.|.|.|.|..|..  ...+.|.|.
T Consensus         8 ~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760           8 DGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             eecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            677888888877542              2369999999999999999999999985  446777665

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.21  E-value=1.2e-10  Score=62.29  Aligned_cols=58  Identities=28%  Similarity=0.453  Sum_probs=41.0

Q ss_pred             cceEEEE-CCEEeCCCCCCCEEEEEe-CCeEEEEEecCCCCCCeEEEEEeecCC-cceeEEE
Q psy3272           2 GMMSWYQ-DTFLIEPSVSDRRLMETR-GNKHTLTIKNVQSTDFGNYSCVADNNL-GRAKKYM   60 (115)
Q Consensus         2 p~v~W~~-~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~-~~~~~~~   60 (115)
                      |.|+|++ ++..+... ..++..... .....|.|.++..+|+|.|+|.+.|.. +....++
T Consensus        31 p~i~W~~~~g~~l~~~-~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~   91 (96)
T cd05865          31 KDISWFSPNGEKLTPN-QQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATV   91 (96)
T ss_pred             CEEEEECCCCcCcccc-CCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEE
Confidence            5999998 67655431 234433222 234789999999999999999999986 6665543

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.20  E-value=2.8e-10  Score=61.04  Aligned_cols=36  Identities=36%  Similarity=0.590  Sum_probs=32.5

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      ...|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus        63 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          63 ESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             eeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEeC
Confidence            457999999999999999999999999888888764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.20  E-value=1.5e-10  Score=59.84  Aligned_cols=57  Identities=26%  Similarity=0.517  Sum_probs=43.0

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME   61 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~   61 (115)
                      .|.+.|+|++..+..  .....  .......|.|.++..+|+|.|.|.+.|..+.....+.
T Consensus        23 ~p~i~W~k~~~~~~~--~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~   79 (82)
T cd05856          23 RPDITWLKDNKPLTP--TEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYK   79 (82)
T ss_pred             CCcEEEEECCcCCcC--Cccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEE
Confidence            378999999987754  22211  1234578999999999999999999999887766443

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.20  E-value=2.1e-10  Score=58.23  Aligned_cols=51  Identities=27%  Similarity=0.368  Sum_probs=42.7

Q ss_pred             ecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          63 SVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      .|.|.|.+.|.+++.            ...|.|.+++.+|.|.|+|.|.|..|..+.++.|.|
T Consensus        11 ~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969          11 KAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             eEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            667777777776542            247999999999999999999999999999888865

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.20  E-value=2.3e-10  Score=60.41  Aligned_cols=36  Identities=36%  Similarity=0.395  Sum_probs=33.2

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ..|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus        47 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   82 (90)
T cd05726          47 GDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVT   82 (90)
T ss_pred             CeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEe
Confidence            369999999999999999999999999888888885

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.19  E-value=4.6e-10  Score=60.08  Aligned_cols=35  Identities=40%  Similarity=0.641  Sum_probs=32.3

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      ..|.|.++..+|.|.|+|.|.|..|..+..+.|.|
T Consensus        63 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          63 SSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEEEEecCccCcCEEEEEEEecCCCCeeEEEEEEC
Confidence            47999999999999999999999999999888865

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.19  E-value=3.8e-10  Score=59.30  Aligned_cols=63  Identities=21%  Similarity=0.210  Sum_probs=50.2

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCC-----------eEEEEEeccCCCCCeeeEEEeecCccceee
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN-----------KHTLTIKNVQSTDFGNYSCVADNNLGRAKK  107 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~-----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~  107 (115)
                      ..+.....|.+             .|.|.|.+.|.+.+.           ...|.|.++..+|+|.|.|.|.|..|....
T Consensus        15 ~g~~v~l~C~~-------------~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~   81 (88)
T cd04968          15 KGQNVTLECFA-------------LGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDTH   81 (88)
T ss_pred             CCCcEEEEEEe-------------eEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcEEE
Confidence            45566777876             667777777766432           347999999999999999999999999988


Q ss_pred             EEEEEEe
Q psy3272         108 YMELSEL  114 (115)
Q Consensus       108 ~~~l~v~  114 (115)
                      .+.|.|.
T Consensus        82 ~~~l~V~   88 (88)
T cd04968          82 QGRIYVQ   88 (88)
T ss_pred             EEEEEEC
Confidence            8888773

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.18  E-value=4.8e-10  Score=60.12  Aligned_cols=59  Identities=22%  Similarity=0.428  Sum_probs=42.2

Q ss_pred             CcceEEEEC--CEEeCCC---CCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272           1 MGMMSWYQD--TFLIEPS---VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY   59 (115)
Q Consensus         1 ~p~v~W~~~--~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   59 (115)
                      .|.|.|+|.  +..+...   ...++.+........|.|.+++.+|+|.|.|.+.|..|....+
T Consensus        30 ~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   93 (98)
T cd05870          30 IPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKS   93 (98)
T ss_pred             CCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeE
Confidence            378999994  4444320   1234554333345789999999999999999999998877663

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.18  E-value=2.3e-10  Score=60.43  Aligned_cols=36  Identities=33%  Similarity=0.575  Sum_probs=33.1

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ..|.|.+++.+|.|.|+|.|.|..|....++.|.|+
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~   90 (90)
T cd05858          55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTVL   90 (90)
T ss_pred             eEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEEC
Confidence            469999999999999999999999999988888874

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.18  E-value=3.6e-10  Score=56.81  Aligned_cols=53  Identities=23%  Similarity=0.410  Sum_probs=39.5

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME   61 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~   61 (115)
                      .|.|+|+|++.++..  ..++.    .....|.|.++  .|+|.|+|.+.|..|.......
T Consensus        15 ~P~v~W~k~g~~l~~--~~~~~----~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~   67 (69)
T cd05739          15 MPYVKWMKGGEELTK--EDEMP----VGRNVLELTNI--YESANYTCVAISSLGMIEATAQ   67 (69)
T ss_pred             CCEEEEEECCEECCC--cccee----cCccEEEEecc--ccCeeEEEEEEeCCCEEEEEEE
Confidence            489999999998765  43322    13457888886  4799999999999988776443

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.18  E-value=1.3e-10  Score=58.45  Aligned_cols=49  Identities=31%  Similarity=0.409  Sum_probs=41.5

Q ss_pred             ecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEE
Q psy3272          63 SVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL  111 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l  111 (115)
                      .|.|.|.+.|.+++.            ...|.|.++..+|.|.|+|.|.|..|..+..+.|
T Consensus         8 ~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           8 QGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             eEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            678888888877542            2369999999999999999999999998887766

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.18  E-value=3.4e-10  Score=57.81  Aligned_cols=52  Identities=23%  Similarity=0.197  Sum_probs=43.0

Q ss_pred             ecccCCcEEEEEeC--------------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 SVSVSDRRLMETRG--------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ~g~~~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .|.|.|.+.|..++              ....|.|.++..+|.|.|+|.|.|..|.....+.|.|+
T Consensus        11 ~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   76 (76)
T cd04978          11 EGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV   76 (76)
T ss_pred             eeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence            66777777776543              12479999999999999999999999999998888774

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.17  E-value=8.9e-10  Score=58.16  Aligned_cols=63  Identities=19%  Similarity=0.231  Sum_probs=49.6

Q ss_pred             CCCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCC---------------eEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          38 QSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN---------------KHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~---------------~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      ...+.-...|.+             .|.|.|.+.|.+++.               ...|.|.++..+|.|.|+|.|.|..
T Consensus        13 ~~G~~v~l~C~~-------------~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~   79 (90)
T cd04972          13 YEGGTATIRCTA-------------EGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPV   79 (90)
T ss_pred             cCCCcEEEEEEE-------------EEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCC
Confidence            344555677776             677788888876541               2479999999999999999999999


Q ss_pred             cceeeEEEEEE
Q psy3272         103 GRAKKYMELSE  113 (115)
Q Consensus       103 ~~~~~~~~l~v  113 (115)
                      |.....+.|.|
T Consensus        80 G~~~~~~~L~v   90 (90)
T cd04972          80 GQANVSVQVTV   90 (90)
T ss_pred             CceeEEEEEeC
Confidence            99888888764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.17  E-value=8.9e-10  Score=57.61  Aligned_cols=37  Identities=27%  Similarity=0.329  Sum_probs=34.2

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ...|.|.++..+|.|.|+|.|.|..|..++.+.|.|.
T Consensus        46 ~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~   82 (85)
T cd05854          46 IGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVR   82 (85)
T ss_pred             EeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEE
Confidence            3579999999999999999999999999999999885

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.17  E-value=3.2e-10  Score=59.88  Aligned_cols=61  Identities=28%  Similarity=0.359  Sum_probs=43.2

Q ss_pred             CcceEEEECCEEeCC------CCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEec
Q psy3272           1 MGMMSWYQDTFLIEP------SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSV   64 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g   64 (115)
                      .|.|.|+|++..+..      ....++.+   .....|.|.++..+|+|.|.|.+.|..|....  .|.|.+
T Consensus        15 ~p~v~W~k~g~~~~~~~~~~~~~~~r~~v---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   83 (90)
T cd05726          15 QPAIFWQKEGSQNLLFSYQPPQSSSRFSV---SQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTD   83 (90)
T ss_pred             CCEEEEEeCCCcceeecccCCCCCCeEEE---CCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEee
Confidence            378999998864310      01233333   22457999999999999999999999888776  565544

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.17  E-value=3.8e-10  Score=58.98  Aligned_cols=63  Identities=25%  Similarity=0.304  Sum_probs=49.2

Q ss_pred             CCCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCC-----------eEEEEEeccCCCCCeeeEEEeecCcccee
Q psy3272          38 QSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN-----------KHTLTIKNVQSTDFGNYSCVADNNLGRAK  106 (115)
Q Consensus        38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~-----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~  106 (115)
                      ...+.-.+.|.+             .|.|.|.+.|.+++.           ...|.|.++..+|.|.|+|.|.|..|...
T Consensus        12 ~~G~~~~l~C~~-------------~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~   78 (85)
T cd05728          12 DIGSSLRWECKA-------------SGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIY   78 (85)
T ss_pred             cCCCcEEEEEEe-------------eEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEE
Confidence            345556677776             667777777766542           24799999999999999999999999998


Q ss_pred             eEEEEEE
Q psy3272         107 KYMELSE  113 (115)
Q Consensus       107 ~~~~l~v  113 (115)
                      ..+.|.|
T Consensus        79 ~~~~l~V   85 (85)
T cd05728          79 ASAELAV   85 (85)
T ss_pred             EEEEEEC
Confidence            8888765

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.16  E-value=2.9e-10  Score=59.37  Aligned_cols=54  Identities=26%  Similarity=0.465  Sum_probs=41.1

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|.|+|++..+... ..++...   ....|.|.++..+|+|.|.|.+.|..|...+
T Consensus        26 ~p~i~W~k~g~~~~~~-~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   79 (86)
T cd05724          26 EPTVSWRKDGQPLNLD-NERVRIV---DDGNLLIAEARKSDEGTYKCVATNMVGERES   79 (86)
T ss_pred             CCEEEEEECCEECCCC-CCCEEEc---cCCEEEEeECCcccCEEEEEEEEeccCceee
Confidence            3689999999987652 2233321   2457999999999999999999998877654

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.16  E-value=8.4e-10  Score=58.97  Aligned_cols=35  Identities=34%  Similarity=0.501  Sum_probs=32.1

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCc-cceeeEEEEEE
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNL-GRAKKYMELSE  113 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~-~~~~~~~~l~v  113 (115)
                      ..|.|.++..+|+|.|+|.|.|.. |..+.++.|.|
T Consensus        60 ~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          60 STLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI   95 (96)
T ss_pred             eEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence            579999999999999999999997 88888988876

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.16  E-value=1e-09  Score=57.72  Aligned_cols=36  Identities=31%  Similarity=0.416  Sum_probs=33.5

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ..|.|.++..+|.|.|+|.|.|..|..+..+.|.|.
T Consensus        47 s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~   82 (88)
T cd05735          47 STLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQ   82 (88)
T ss_pred             EEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEe
Confidence            469999999999999999999999999999999886

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.16  E-value=2.6e-10  Score=59.95  Aligned_cols=52  Identities=25%  Similarity=0.350  Sum_probs=40.7

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+|++..+..  .....    .....|.|.+++.+|+|.|.|.+.|..|....
T Consensus        30 ~p~v~W~k~~~~~~~--~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~   81 (88)
T cd04968          30 VPQIKWRKVDGSMPS--SAEIS----MSGAVLKIPNIQFEDEGTYECEAENIKGKDTH   81 (88)
T ss_pred             CCEEEEEECCCcCCC--ccEEE----EeCCEEEECCCCcccCEEEEEEEEECCCcEEE
Confidence            378999998876654  32221    23568999999999999999999999888766

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.15  E-value=7.9e-10  Score=58.87  Aligned_cols=54  Identities=22%  Similarity=0.383  Sum_probs=39.7

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCC-CCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQ-STDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+|+|.++..  ........  ....|.|.++. .+|+|.|.|.+.|..|...+
T Consensus        33 ~P~i~W~k~g~~l~~--~~~~~~~~--~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S   87 (94)
T cd05848          33 VPTYRWLRNGTEIDT--ESDYRYSL--IDGNLIISNPSEVKDSGRYQCLATNSIGSILS   87 (94)
T ss_pred             CCEEEEEECCeECcc--CCCceEEe--eCCeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence            479999999998865  33222211  23468888875 68999999999999987765

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.15  E-value=6.7e-10  Score=56.47  Aligned_cols=55  Identities=31%  Similarity=0.483  Sum_probs=41.2

Q ss_pred             CcceEEEE-CCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272           1 MGMMSWYQ-DTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM   60 (115)
Q Consensus         1 ~p~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~   60 (115)
                      .|.|.|++ ++..+..  ..+...   .....|.|..+..+|.|.|.|.+.|..+.....+
T Consensus        15 ~p~v~W~~~~~~~~~~--~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   70 (74)
T cd05764          15 EPAIHWISPDGKLISN--SSRTLV---YDNGTLDILITTVKDTGSFTCIASNAAGEATATV   70 (74)
T ss_pred             CCEEEEEeCCCEEecC--CCeEEE---ecCCEEEEEECChhhCEEEEEEEECCCCeEEEEE
Confidence            47899997 5666654  444332   2345799999999999999999999988876643

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.15  E-value=7.4e-10  Score=59.00  Aligned_cols=63  Identities=21%  Similarity=0.310  Sum_probs=48.3

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC--------------CeEEEEEeccCCCCCeeeEEEeecCccc
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG--------------NKHTLTIKNVQSTDFGNYSCVADNNLGR  104 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~  104 (115)
                      ..+.-.+.|.+             .|.|.|.+.|.+++              ....|.|.++..+|.|.|+|.|.|..|.
T Consensus        17 ~G~~v~L~C~~-------------~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   83 (95)
T cd05730          17 LGQSVTLACDA-------------DGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGE   83 (95)
T ss_pred             CCCCEEEEEec-------------cEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCe
Confidence            34455667776             45666666665543              1236999999999999999999999999


Q ss_pred             eeeEEEEEEe
Q psy3272         105 AKKYMELSEL  114 (115)
Q Consensus       105 ~~~~~~l~v~  114 (115)
                      .+..+.|.|.
T Consensus        84 ~~~~~~L~V~   93 (95)
T cd05730          84 QEAEIHLKVF   93 (95)
T ss_pred             EEEEEEEEEE
Confidence            9999988875

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.15  E-value=9.8e-10  Score=56.76  Aligned_cols=51  Identities=24%  Similarity=0.340  Sum_probs=41.2

Q ss_pred             ecccCCcEEEEEeC-------------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          63 SVSVSDRRLMETRG-------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        63 ~g~~~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      .|.|.|.+.|.+++             ....|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus        19 ~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   82 (82)
T cd05856          19 SGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV   82 (82)
T ss_pred             eEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence            56667777776643             1357999999999999999999999999888877754

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.14  E-value=8.4e-10  Score=58.77  Aligned_cols=54  Identities=26%  Similarity=0.363  Sum_probs=40.1

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCC-CCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQ-STDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+++|..+......++...    ...|.|.++. ..|.|.|.|.+.|..|...+
T Consensus        33 ~p~i~W~~~g~~l~~~~~~~~~~~----~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   87 (94)
T cd05850          33 PATYRWKMNGTEIKFAPESRYTLV----AGNLVINNPQKARDAGSYQCLAINRCGTVVS   87 (94)
T ss_pred             CCEEEEEECCEECccCCCceEEEE----CCeEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence            478999999998864223333332    3568887765 58999999999999988766

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.13  E-value=1.1e-09  Score=55.68  Aligned_cols=51  Identities=24%  Similarity=0.283  Sum_probs=40.7

Q ss_pred             ecccCCcEEEEEeC-------------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          63 SVSVSDRRLMETRG-------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        63 ~g~~~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      .|.|.|.+.|.+.+             ....|.|..+..+|.|.|+|.|.|..|..+..+.|.|
T Consensus        11 ~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764          11 RGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             cCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            56677777776522             1236999999999999999999999999888888765

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.13  E-value=1e-09  Score=56.07  Aligned_cols=52  Identities=27%  Similarity=0.293  Sum_probs=42.9

Q ss_pred             ecccCCcEEEEEeCC---------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 SVSVSDRRLMETRGN---------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~---------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .|.|.|.+.|.+++.               ...|.|.++..+|.|.|+|.+.|..|..+..+.|.|.
T Consensus         8 ~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           8 EGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             eecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            567777777765431               2369999999999999999999999999999998875

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.13  E-value=1.4e-09  Score=57.95  Aligned_cols=36  Identities=42%  Similarity=0.631  Sum_probs=32.5

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      ...|.|.++..+|.|.|.|.|.|..|..+..+.|.|
T Consensus        61 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~v   96 (96)
T cd05732          61 VSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEeC
Confidence            357999999999999999999999999988887764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.11  E-value=1.5e-09  Score=57.51  Aligned_cols=53  Identities=26%  Similarity=0.397  Sum_probs=38.3

Q ss_pred             CcceEEEE-CCEEeCCCCCCCEEEEE-eCCeEEEEEecCCCCCCeEEEEEeecCCcc
Q psy3272           1 MGMMSWYQ-DTFLIEPSVSDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNNLGR   55 (115)
Q Consensus         1 ~p~v~W~~-~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   55 (115)
                      +|.|+|++ ++..+..  ..++.... ......|+|.++..+|+|.|+|.+.|..+.
T Consensus        28 p~~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~   82 (92)
T cd04977          28 PKDISWFSPNGEKLVT--QQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT   82 (92)
T ss_pred             CCeEEEECCCCCEecc--CCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence            35799998 5655544  34443322 234578999999999999999999998544

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.10  E-value=1.2e-09  Score=56.36  Aligned_cols=35  Identities=37%  Similarity=0.479  Sum_probs=32.1

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      ..|.|.++..+|+|.|.|.|.|..|.....+.|.|
T Consensus        47 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   81 (81)
T cd05765          47 GQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV   81 (81)
T ss_pred             cEEEEccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence            46999999999999999999999999998888875

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.10  E-value=1.3e-09  Score=57.32  Aligned_cols=75  Identities=29%  Similarity=0.404  Sum_probs=49.4

Q ss_pred             CCCCCeEEEEEeecCCcceeEEEEEec---ccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          38 QSTDFGNYSCVADNNLGRAKKYMELSV---SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g---~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      ...+...+.|.+..... ........|   ....++.....+....|.|.++..+|.|.|+|.+.|..|..+..+.|.|
T Consensus        13 ~~G~~~~l~c~~~~~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   13 KEGESVTLECEVSGNPP-PTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV   90 (90)
T ss_dssp             ETTSEEEEEEEEEESSS-SEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eCCCEEEEEEEEEeCCC-CcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence            34556777888753311 111111111   1122333344446678999999999999999999999999999988876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.10  E-value=2.3e-09  Score=58.57  Aligned_cols=61  Identities=25%  Similarity=0.396  Sum_probs=44.1

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEe----CCeEEEEEecCC-CCCCeEEEEEeecCCcceeEEEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETR----GNKHTLTIKNVQ-STDFGNYSCVADNNLGRAKKYMEL   62 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~~~~~v   62 (115)
                      .|.++|+|++..+... ..++.....    .....|.|.++. .+|.|.|.|.+.|..|.....+.+
T Consensus        37 ~p~i~W~k~g~~l~~~-~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L  102 (109)
T cd05773          37 RVQFRWAKNGVPLDLG-NPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQL  102 (109)
T ss_pred             CCEEEEEECCEECCCC-CCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEE
Confidence            3689999999988641 234432211    124679999987 589999999999999888774443

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.10  E-value=9.1e-10  Score=58.13  Aligned_cols=29  Identities=34%  Similarity=0.705  Sum_probs=26.6

Q ss_pred             EEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272          30 HTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus        30 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      ..|.|.+++.+|+|.|+|.+.|..|...+
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~   83 (90)
T cd05858          55 EVLYLRNVTFEDAGEYTCLAGNSIGISHH   83 (90)
T ss_pred             eEEEEccCCHHHCEEEEEEEEeCCCcccc
Confidence            67999999999999999999999887766

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.09  E-value=1.6e-09  Score=57.57  Aligned_cols=53  Identities=26%  Similarity=0.530  Sum_probs=40.3

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCC-CCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQ-STDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+|++.++... ..++...    ...|.|.++. .+|+|.|.|.+.|..|...+
T Consensus        33 ~P~i~W~k~~~~i~~~-~~~~~~~----~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   86 (93)
T cd05849          33 FPIYKWRKNNLDIDLT-NDRYSMV----GGNLVINNPDKYKDAGRYVCIVSNIYGKVRS   86 (93)
T ss_pred             CCEEEEEECCEEccCC-CCeEEEE----CCEEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence            4799999999988541 3344332    3578898875 68999999999999887765

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.09  E-value=1.4e-09  Score=55.38  Aligned_cols=51  Identities=25%  Similarity=0.233  Sum_probs=41.5

Q ss_pred             ecccCCcEEEEEeCC--------------eEEEEEeccCCCCCeeeEEEeecCccc-eeeEEEEEE
Q psy3272          63 SVSVSDRRLMETRGN--------------KHTLTIKNVQSTDFGNYSCVADNNLGR-AKKYMELSE  113 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~--------------~~~l~i~~~~~~d~G~y~C~~~n~~~~-~~~~~~l~v  113 (115)
                      .|.|.|.+.|.+++.              ...|.|.++..+|.|.|.|.|.|..|. .+..+.|.|
T Consensus         8 ~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           8 SGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             eEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            678888888877531              236899999999999999999999998 466777766

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.08  E-value=1.7e-09  Score=57.11  Aligned_cols=30  Identities=33%  Similarity=0.702  Sum_probs=26.7

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      ...|.|.+++.+|+|.|.|.+.|..|...+
T Consensus        54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~   83 (90)
T cd04974          54 SEVLYLRNVSFDDAGEYTCLAGNSIGPSHH   83 (90)
T ss_pred             cceEEEeccccccCcEEEEEeecccCcccC
Confidence            357999999999999999999999887766

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.08  E-value=1.8e-09  Score=57.13  Aligned_cols=54  Identities=24%  Similarity=0.380  Sum_probs=39.4

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCC-CCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQ-STDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+|++..+......++..    ....|.|.++. .+|+|.|.|.+.|..|...+
T Consensus        33 ~p~i~W~k~~~~l~~~~~~~~~~----~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S   87 (91)
T cd04967          33 PPTYRWLMNGTEIDDEPDSRYSL----VGGNLVISNPSKAKDAGRYQCLASNIVGTVLS   87 (91)
T ss_pred             CCEEEEEECCEECCCCCCCCEEE----ECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence            47999999999885421333332    23468888776 48999999999999887654

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.07  E-value=4.3e-09  Score=56.41  Aligned_cols=60  Identities=32%  Similarity=0.433  Sum_probs=44.0

Q ss_pred             c-ceEEEECCEEeCCCCCCCEEEEEe----CCeEEEEEecCCCCC-CeEEEEEeecCCcceeEEEE
Q psy3272           2 G-MMSWYQDTFLIEPSVSDRRLMETR----GNKHTLTIKNVQSTD-FGNYSCVADNNLGRAKKYME   61 (115)
Q Consensus         2 p-~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d-~G~y~C~~~~~~~~~~~~~~   61 (115)
                      | .|.|++++..+......++.+...    .....|.|.++..+| .|.|.|.+.|..|.....+.
T Consensus        31 P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~   96 (98)
T cd05758          31 PDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIIS   96 (98)
T ss_pred             CCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccEEEE
Confidence            5 599999999887522345554432    223589999999845 89999999999988776544

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.06  E-value=3.6e-09  Score=56.06  Aligned_cols=61  Identities=26%  Similarity=0.393  Sum_probs=45.8

Q ss_pred             CCCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC---------------CeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          38 QSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG---------------NKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      ...+.-...|.+             .|.|.|.+.|.+++               ....|.|.++..+|.|.|.|.|.|..
T Consensus        16 ~~G~~~~L~C~~-------------~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~   82 (92)
T cd05747          16 SEGESARFSCDV-------------DGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSE   82 (92)
T ss_pred             eCCCcEEEEEEE-------------eecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCC
Confidence            345556677776             45555555665443               23579999999999999999999999


Q ss_pred             cceeeEEEE
Q psy3272         103 GRAKKYMEL  111 (115)
Q Consensus       103 ~~~~~~~~l  111 (115)
                      |..+..+.|
T Consensus        83 G~~~~~~~l   91 (92)
T cd05747          83 GKQEAQFTL   91 (92)
T ss_pred             CCEeEEEEe
Confidence            998887765

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.06  E-value=3.3e-09  Score=56.25  Aligned_cols=35  Identities=37%  Similarity=0.442  Sum_probs=32.0

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      ..|.|.++..+|.|.|+|.|.|..|..+..+.|.|
T Consensus        58 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~~   92 (92)
T cd05891          58 ASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV   92 (92)
T ss_pred             EEEEECCCChhhCEEEEEEEEeCCCceeeEEEEEC
Confidence            47999999999999999999999999998888765

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.06  E-value=1.4e-09  Score=55.05  Aligned_cols=50  Identities=18%  Similarity=0.138  Sum_probs=39.6

Q ss_pred             EEEecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCccceeeEE
Q psy3272          60 MELSVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM  109 (115)
Q Consensus        60 ~~v~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~  109 (115)
                      ..+.|.|.|.+.|.+++.            ...|.|.++..+|+|.|+|.|.|.........
T Consensus         5 c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~   66 (72)
T cd07702           5 PKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNL   66 (72)
T ss_pred             eeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeE
Confidence            344789999999987641            22799999999999999999999877654443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.05  E-value=3.5e-09  Score=56.04  Aligned_cols=62  Identities=24%  Similarity=0.390  Sum_probs=44.8

Q ss_pred             CCCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC------------CeEEEEEeccCCCCCeeeEEEeecCccce
Q psy3272          38 QSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG------------NKHTLTIKNVQSTDFGNYSCVADNNLGRA  105 (115)
Q Consensus        38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~  105 (115)
                      ...+.-.+.|.+..             . .|.+.|.+++            ....|.|.++.++|.|.|.|.|.|..|..
T Consensus        16 ~~g~~v~l~C~a~g-------------~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   81 (91)
T cd05740          16 EDNQPVTLTCEAEG-------------Q-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNM   81 (91)
T ss_pred             ccCCcEEEEEEeCC-------------C-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCE
Confidence            45667788888753             3 3344443322            23479999999999999999999999984


Q ss_pred             -eeEEEEEE
Q psy3272         106 -KKYMELSE  113 (115)
Q Consensus       106 -~~~~~l~v  113 (115)
                       +..+.|.|
T Consensus        82 ~S~~~~L~V   90 (91)
T cd05740          82 TSDPYILNV   90 (91)
T ss_pred             EeeeEEEEe
Confidence             44777766

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.03  E-value=5.2e-09  Score=54.61  Aligned_cols=37  Identities=24%  Similarity=0.365  Sum_probs=33.7

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ...|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus        46 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~   82 (85)
T cd04970          46 NGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVR   82 (85)
T ss_pred             cceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEE
Confidence            3479999999999999999999999999889888885

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.03  E-value=4.3e-09  Score=54.06  Aligned_cols=34  Identities=35%  Similarity=0.440  Sum_probs=29.0

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceeeEEEE
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL  111 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l  111 (115)
                      ...|.|.++..+|.|.|+|.|.|..|.......+
T Consensus        41 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~   74 (78)
T cd05743          41 YGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG   74 (78)
T ss_pred             EEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence            4579999999999999999999999986654433

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.02  E-value=1.2e-08  Score=53.13  Aligned_cols=38  Identities=29%  Similarity=0.462  Sum_probs=33.5

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCcc--ceeeEEEEEEeC
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLG--RAKKYMELSELE  115 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~--~~~~~~~l~v~~  115 (115)
                      ...|.|.+++.+|+|.|.|.+.|..+  ...+.+.|.|.+
T Consensus        45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~~   84 (84)
T cd05861          45 RSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVHE   84 (84)
T ss_pred             EEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEeC
Confidence            46899999999999999999999876  578888998864

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.01  E-value=3.7e-09  Score=55.17  Aligned_cols=37  Identities=19%  Similarity=0.378  Sum_probs=34.0

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ...|.|.+++.+|+|+|+|.|+|..+....++.|.|+
T Consensus        46 ~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~   82 (85)
T cd05853          46 AGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVR   82 (85)
T ss_pred             CCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEe
Confidence            3479999999999999999999999999999999885

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.01  E-value=3.2e-09  Score=54.66  Aligned_cols=35  Identities=37%  Similarity=0.545  Sum_probs=29.7

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccce-eeEEEEEE
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGRA-KKYMELSE  113 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~-~~~~~l~v  113 (115)
                      ..|.|.++..+|.|.|.|.|.|..|.. ++.+.|.|
T Consensus        44 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~   79 (79)
T cd05734          44 GSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV   79 (79)
T ss_pred             CeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence            479999999999999999999999985 55666654

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.01  E-value=3.9e-09  Score=54.45  Aligned_cols=60  Identities=23%  Similarity=0.252  Sum_probs=38.6

Q ss_pred             CcceEEEECCE---EeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272           1 MGMMSWYQDTF---LIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM   60 (115)
Q Consensus         1 ~p~v~W~~~~~---~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~   60 (115)
                      .|.|+|+|++.   .+...+..............|.|.++..+|+|.|.|.+.|..|.....+
T Consensus        15 ~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   77 (81)
T cd05765          15 PPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANF   77 (81)
T ss_pred             CCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEE
Confidence            37899999742   1111001100000112346899999999999999999999998877643

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.01  E-value=8.9e-09  Score=54.58  Aligned_cols=75  Identities=21%  Similarity=0.256  Sum_probs=48.1

Q ss_pred             CCCCCCeEEEEEeecCCcceeEEEEE-ec---ccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccc-eeeEEEE
Q psy3272          37 VQSTDFGNYSCVADNNLGRAKKYMEL-SV---SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR-AKKYMEL  111 (115)
Q Consensus        37 ~~~~d~G~y~C~~~~~~~~~~~~~~v-~g---~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~-~~~~~~l  111 (115)
                      +...+.-.+.|.+.....  .....- .|   .+..++....++....|.|..+..+|+|.|+|.|.|..|. ..+++.|
T Consensus        12 v~~G~~v~l~C~~~G~P~--~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l   89 (92)
T cd05866          12 LSVGESKFFTCTAIGEPE--SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVL   89 (92)
T ss_pred             EcCCCeEEEEEEEEEeCC--eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEE
Confidence            345566678888754221  111111 11   1223344444444568999999999999999999999998 4667777


Q ss_pred             EE
Q psy3272         112 SE  113 (115)
Q Consensus       112 ~v  113 (115)
                      .+
T Consensus        90 ~~   91 (92)
T cd05866          90 EI   91 (92)
T ss_pred             EE
Confidence            65

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.00  E-value=7.5e-09  Score=56.55  Aligned_cols=36  Identities=33%  Similarity=0.553  Sum_probs=32.4

Q ss_pred             EEEEEeccC-CCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          79 HTLTIKNVQ-STDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        79 ~~l~i~~~~-~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ..|.|.++. .+|.|.|+|.|.|..|.....+.|.|.
T Consensus        69 s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~  105 (109)
T cd05773          69 SILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVST  105 (109)
T ss_pred             eEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEec
Confidence            468999987 589999999999999999999998875

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.99  E-value=1.5e-08  Score=52.60  Aligned_cols=57  Identities=25%  Similarity=0.470  Sum_probs=42.3

Q ss_pred             cceEEEECCEEeCCCCCCCEEE-EEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLM-ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM   60 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~   60 (115)
                      |.|.|++++..+..  ...... ........|.|.++..+|.|.|.|.+.+..+.....+
T Consensus        24 ~~v~W~k~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~   81 (85)
T cd05729          24 PTITWLKDGKPFKK--EHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTY   81 (85)
T ss_pred             CeEEEEECCEECcc--cCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEE
Confidence            67999999987764  333222 1223456799999999999999999999887766543

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.98  E-value=7.2e-09  Score=55.18  Aligned_cols=55  Identities=31%  Similarity=0.486  Sum_probs=37.7

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecC-----CCCCCeEEEEEeecC-CcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNV-----QSTDFGNYSCVADNN-LGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~G~y~C~~~~~-~~~~~~   58 (115)
                      .|.|+|+|+|..+......++..   .....+.|..+     ..+|.|.|.|.+.|. .|...+
T Consensus        28 ~p~i~W~k~g~~l~~~~~~~~~~---~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s   88 (95)
T cd05722          28 PPKIEWKKDGVLLNLVSDERRQQ---LPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVS   88 (95)
T ss_pred             CCEEEEEECCeECccccCcceEE---ccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEE
Confidence            47899999999887521222222   12334556554     578999999999999 877754

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.98  E-value=1.1e-08  Score=51.40  Aligned_cols=47  Identities=21%  Similarity=0.321  Sum_probs=38.0

Q ss_pred             ecccCCcEEEEEeCC-----------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEE
Q psy3272          63 SVSVSDRRLMETRGN-----------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL  111 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~-----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l  111 (115)
                      .|.|.|.+.|.+++.           ...|.|.++.  |.|.|+|.|.|..|..+.++.|
T Consensus        11 ~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739          11 VGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             eecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            789999999987652           2357888864  7999999999999998887765

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.98  E-value=2.3e-09  Score=55.17  Aligned_cols=45  Identities=20%  Similarity=0.459  Sum_probs=33.9

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM   60 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~   60 (115)
                      .+.|+||+..+..            ....|.|.++ .+|+|.|.|.+.+........|
T Consensus        32 ~~~W~kng~~l~~------------~~~~l~i~~~-~~dsG~Y~C~a~~~~~S~~v~l   76 (78)
T cd05752          32 STQWYHNGKLLET------------TTNSYRIRAA-NNDSGEYRCQTQGSSLSDPVHL   76 (78)
T ss_pred             cEEEEECCEEeec------------cCCeEEEeec-ccCCEEeEEECCCCcCCCCEEE
Confidence            6999999987743            2456888899 9999999999987543333343

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.97  E-value=4.9e-09  Score=53.97  Aligned_cols=55  Identities=22%  Similarity=0.312  Sum_probs=37.9

Q ss_pred             CcceEEEECCEEe-CCC-----CCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLI-EPS-----VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~-~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|.|++++... +..     ...++..   .....|.|.++..+|+|.|.|.+.|..|...+
T Consensus        12 ~P~v~W~~~~~~~~~~~~~~~~~~~r~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s   72 (79)
T cd05734          12 PPTIVWKHSKGRGHPQHTHTCCLAGRIQL---LSNGSLLIKHVLEEDSGYYLCKVSNDVGADAS   72 (79)
T ss_pred             CCEEEEEECCCccccccccccccCCCEEE---ecCCeEEECcCCcccCEEEEEEEEeCCCCCCc
Confidence            4799999964321 110     1223332   23467999999999999999999998877644

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.97  E-value=6e-09  Score=52.96  Aligned_cols=33  Identities=30%  Similarity=0.555  Sum_probs=29.1

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceeeEEE
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME  110 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~  110 (115)
                      ...|.|..+..+|.|.|+|.|.|..|.....+.
T Consensus        42 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750          42 NSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             eEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            357999999999999999999999999777654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.97  E-value=2e-09  Score=56.43  Aligned_cols=46  Identities=26%  Similarity=0.512  Sum_probs=36.1

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      |.|.|+++|.++... ..++.+    ....|.|.+++.+|+|.|.|.+...
T Consensus        25 ~~i~W~~ng~~i~~~-~~r~~~----~~~~L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873          25 ARVVWKFDGKVLTPE-SAKYLL----YRDGLLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             CeEEEEECCEECCCC-CceEEE----ECCcEEEeCCCHHHCEEEEEEEEec
Confidence            689999999998762 134433    2346899999999999999999764

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.96  E-value=4e-09  Score=64.55  Aligned_cols=48  Identities=29%  Similarity=0.501  Sum_probs=39.3

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      |+|+|+|+|.++..  .+++...  .....|.|.+++.+|+|.|.|.+....
T Consensus       164 p~I~WyKng~~l~~--~~r~~~~--~~~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        164 YTLTWYKNGNIVLY--TDRIQLR--NNNSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             ceEEEEECCEECCC--CCCEEEe--CCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence            78999999999876  5565432  345689999999999999999998654

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.95  E-value=1.2e-08  Score=53.04  Aligned_cols=36  Identities=31%  Similarity=0.428  Sum_probs=32.5

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      ...|.|.+++.+|+|.|+|.|.|..+..+.+..|.|
T Consensus        48 ~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v   83 (84)
T cd05742          48 SSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI   83 (84)
T ss_pred             EEEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence            457999999999999999999999999888887766

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.95  E-value=3.6e-09  Score=55.08  Aligned_cols=57  Identities=25%  Similarity=0.257  Sum_probs=38.8

Q ss_pred             cceEEEECCEEeCCCC--C-CCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           2 GMMSWYQDTFLIEPSV--S-DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~--~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      |.++|++++..+....  . .............|.|.+++.+|+|.|.|.+.+..+....
T Consensus        18 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~   77 (84)
T cd05742          18 VDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKE   77 (84)
T ss_pred             EEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEE
Confidence            5799998876543210  0 0011111123568999999999999999999998877665

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.95  E-value=1e-08  Score=53.45  Aligned_cols=35  Identities=34%  Similarity=0.514  Sum_probs=29.1

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccce-eeEEEEEE
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGRA-KKYMELSE  113 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~-~~~~~l~v  113 (115)
                      ..|.|.++..+|.|.|+|.+.|..|.. +..+.|.|
T Consensus        51 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~V   86 (86)
T cd05724          51 GNLLIAEARKSDEGTYKCVATNMVGERESAAARLSV   86 (86)
T ss_pred             CEEEEeECCcccCEEEEEEEEeccCceeeeeEEEEC
Confidence            479999999999999999999999984 44555543

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=98.92  E-value=2.6e-08  Score=53.17  Aligned_cols=58  Identities=26%  Similarity=0.447  Sum_probs=35.0

Q ss_pred             CcceEEEECCEEeCCCC---CCCEEEEEeCCeEEEEEe--cCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSV---SDRRLMETRGNKHTLTIK--NVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~--~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+|+|..+....   ..+...........+.+.  .+..+|+|.|.|.+.|..|...+
T Consensus        30 ~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s   92 (100)
T cd07693          30 TPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVS   92 (100)
T ss_pred             CCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccceec
Confidence            36899999999876410   111111111112222332  33689999999999999887443

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.90  E-value=5.9e-09  Score=54.87  Aligned_cols=48  Identities=21%  Similarity=0.378  Sum_probs=34.6

Q ss_pred             cceEEEECCEEeCCCCC--CCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           2 GMMSWYQDTFLIEPSVS--DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      |.+.|+|++..+.....  .++..    ....|.|.++..+|+|.|.|.+.+..
T Consensus        25 ~~i~W~k~~~~~~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~~~~   74 (89)
T cd04979          25 ASVVWLFQGGPLQRKEEPEERLLV----TEDGLLIRSVSPADAGVYTCQSVEHG   74 (89)
T ss_pred             ceEEEEECCcccccccCcCceEEE----cCCCEEEccCCHHHCEEEEEEEecCc
Confidence            68999999987665110  12222    23458999999999999999998654

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.90  E-value=2.2e-08  Score=51.60  Aligned_cols=34  Identities=26%  Similarity=0.539  Sum_probs=30.6

Q ss_pred             EEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        80 ~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      .|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus        46 ~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V   79 (79)
T cd04973          46 EVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV   79 (79)
T ss_pred             EEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence            6999999999999999999999999888777654

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.89  E-value=1.5e-08  Score=51.90  Aligned_cols=45  Identities=29%  Similarity=0.372  Sum_probs=34.0

Q ss_pred             ecccCCcEEEEEeCC---------------eEEEEEeccCC----CCCeeeEEEeecCccceee
Q psy3272          63 SVSVSDRRLMETRGN---------------KHTLTIKNVQS----TDFGNYSCVADNNLGRAKK  107 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~---------------~~~l~i~~~~~----~d~G~y~C~~~n~~~~~~~  107 (115)
                      .|.|.|.+.|.+++.               ...|.|..+..    +|.|.|.|.|.|..|...+
T Consensus         8 ~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           8 KGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             cccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            677888888876542               24678888754    6899999999999998443

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.88  E-value=5.6e-08  Score=51.69  Aligned_cols=59  Identities=27%  Similarity=0.362  Sum_probs=41.6

Q ss_pred             CCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCC-------------eEEEEEeccC-CCCCeeeEEEeecCccce
Q psy3272          40 TDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN-------------KHTLTIKNVQ-STDFGNYSCVADNNLGRA  105 (115)
Q Consensus        40 ~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~-------------~~~l~i~~~~-~~d~G~y~C~~~n~~~~~  105 (115)
                      .+.-.+.|.+             .|.|.|.+.|..++.             ...|.|.++. .+|.|.|.|.|.|..|..
T Consensus        19 g~~v~l~C~a-------------~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~   85 (94)
T cd05850          19 EEKVTLGCRA-------------RASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTV   85 (94)
T ss_pred             CCeEEEEeEc-------------eeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcE
Confidence            3456778877             566677777766542             1357787765 599999999999999985


Q ss_pred             ee-EEEE
Q psy3272         106 KK-YMEL  111 (115)
Q Consensus       106 ~~-~~~l  111 (115)
                      .+ .+.|
T Consensus        86 ~s~~a~l   92 (94)
T cd05850          86 VSREANL   92 (94)
T ss_pred             EEEEEEE
Confidence            43 5444

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.88  E-value=8e-09  Score=53.88  Aligned_cols=51  Identities=25%  Similarity=0.318  Sum_probs=39.4

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM   60 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~   60 (115)
                      |.|.|++++..++.  ..      ......|.|.+++.+|+|.|.|.+.+..+......
T Consensus        32 ~~i~W~~~~~~~~~--~~------~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~   82 (85)
T cd05754          32 YTLVWTRVGGGLPS--RA------MDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATA   82 (85)
T ss_pred             cEEEEEECCCcCCC--cc------cccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEE
Confidence            68999998876543  11      12346799999999999999999999887776643

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.88  E-value=4.3e-08  Score=51.93  Aligned_cols=75  Identities=19%  Similarity=0.192  Sum_probs=45.5

Q ss_pred             CCCCCCeEEEEEeecCCcceeEEEEE-eccc---CCcEEEEE-eCCeEEEEEeccCCCCCeeeEEEeecCccc-eeeEEE
Q psy3272          37 VQSTDFGNYSCVADNNLGRAKKYMEL-SVSV---SDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNNLGR-AKKYME  110 (115)
Q Consensus        37 ~~~~d~G~y~C~~~~~~~~~~~~~~v-~g~~---~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~-~~~~~~  110 (115)
                      +...+.-.+.|.+.....  ...... +|.+   ..++.... ......|.|.++..+|.|.|+|.|.|..|. ...++.
T Consensus        12 v~~G~~~~l~C~~~G~p~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~   89 (92)
T cd04977          12 ISVGESKFFLCQVIGEPK--DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVN   89 (92)
T ss_pred             ECCCCeEEEEEEeEeeCC--eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEE
Confidence            345677788998854321  111111 1211   11221111 223468999999999999999999999654 666777


Q ss_pred             EEE
Q psy3272         111 LSE  113 (115)
Q Consensus       111 l~v  113 (115)
                      |.|
T Consensus        90 l~~   92 (92)
T cd04977          90 LKI   92 (92)
T ss_pred             EEC
Confidence            654

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.87  E-value=1.5e-08  Score=52.86  Aligned_cols=53  Identities=21%  Similarity=0.284  Sum_probs=34.5

Q ss_pred             cceEEEECCEEeCCCCCC--CEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272           2 GMMSWYQDTFLIEPSVSD--RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG   54 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~   54 (115)
                      |.+.|+++++........  +...........|.|.+++.+|+|.|.|.+.+...
T Consensus        16 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~   70 (84)
T cd05861          16 VDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQ   70 (84)
T ss_pred             cEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECcc
Confidence            688999877643210001  11111112357899999999999999999987654

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=98.84  E-value=6.8e-08  Score=51.39  Aligned_cols=58  Identities=24%  Similarity=0.286  Sum_probs=42.0

Q ss_pred             CCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCC-------------eEEEEEeccC-CCCCeeeEEEeecCcccee
Q psy3272          41 DFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN-------------KHTLTIKNVQ-STDFGNYSCVADNNLGRAK  106 (115)
Q Consensus        41 d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~-------------~~~l~i~~~~-~~d~G~y~C~~~n~~~~~~  106 (115)
                      +.-.+.|.+             .|.|.|.+.|.+++.             ...|.|.++. .+|.|.|.|.|.|..|...
T Consensus        20 ~~v~l~C~~-------------~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~   86 (94)
T cd05848          20 KKVILNCEA-------------RGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSIL   86 (94)
T ss_pred             CEEEEEEEe-------------eecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEE
Confidence            345677776             677888888876542             1257788875 6999999999999999864


Q ss_pred             -eEEEE
Q psy3272         107 -KYMEL  111 (115)
Q Consensus       107 -~~~~l  111 (115)
                       +.+.|
T Consensus        87 S~~~~l   92 (94)
T cd05848          87 SREALL   92 (94)
T ss_pred             eccEEE
Confidence             34443

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.84  E-value=2e-08  Score=53.48  Aligned_cols=35  Identities=26%  Similarity=0.261  Sum_probs=31.9

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      ..|.|.++..+|+|.|+|.+.|..|..+..+.|.|
T Consensus        60 ~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~v   94 (94)
T cd05756          60 DLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLTV   94 (94)
T ss_pred             CeEEEccCCcccCeEEEEEEcCCCccEEEEEEEEC
Confidence            46899999999999999999999999888888865

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.84  E-value=1.2e-08  Score=53.10  Aligned_cols=47  Identities=19%  Similarity=0.225  Sum_probs=37.0

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      +.+.|||++..+..  .        .....|.|.+++.+|+|.|.|.+.+..+...+
T Consensus        30 ~~~~w~k~g~~~~~--~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s   76 (83)
T cd05753          30 YKVTYYRDGKAKKY--S--------HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSS   76 (83)
T ss_pred             eEEEEEECCeEccc--c--------CCCceEEECccCHHHCEEEEEEEEeCCceecC
Confidence            46899999987654  1        12467999999999999999999988765544

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.83  E-value=2.6e-08  Score=50.82  Aligned_cols=34  Identities=24%  Similarity=0.472  Sum_probs=30.0

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCccceeeEEE
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME  110 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~  110 (115)
                      ....|.|.++..+|+|.|+|.+.|..|..+.++.
T Consensus        42 ~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895          42 KSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             cEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            4467999999999999999999999999877654

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.81  E-value=3.2e-08  Score=51.26  Aligned_cols=48  Identities=17%  Similarity=0.324  Sum_probs=35.6

Q ss_pred             Cc-ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MG-MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .| .|+|+|+|.++..  ..      ......|.|..+  .|.|.|.|.+.|..|...+
T Consensus        27 ~P~~I~W~k~g~~l~~--~~------~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s   75 (81)
T cd05749          27 EPVEILWWQGGSPLGD--PP------APSPSVLNVPGL--NETSKFSCEAHNAKGVTTS   75 (81)
T ss_pred             CCeEEEEEECCEECCC--CC------CCCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence            36 6999999998753  11      112457888776  4789999999999887665

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.81  E-value=5.8e-08  Score=49.77  Aligned_cols=48  Identities=23%  Similarity=0.236  Sum_probs=34.9

Q ss_pred             ecccCCcEEEEEeCC---------------eEEEEEeccCC----CCCeeeEEEeecCccceee-EEE
Q psy3272          63 SVSVSDRRLMETRGN---------------KHTLTIKNVQS----TDFGNYSCVADNNLGRAKK-YME  110 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~---------------~~~l~i~~~~~----~d~G~y~C~~~n~~~~~~~-~~~  110 (115)
                      .|.|.|.+.|.+++.               ...|.|..+..    .|.|.|+|.|.|..|...+ .+.
T Consensus         8 ~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~   75 (77)
T cd05874           8 KGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIV   75 (77)
T ss_pred             cccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEE
Confidence            678888888876542               23677777764    3789999999999998544 443

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=98.80  E-value=7.1e-08  Score=51.24  Aligned_cols=49  Identities=20%  Similarity=0.269  Sum_probs=37.3

Q ss_pred             ecccCCcEEEEEeCC------------eEEEEEeccC-CCCCeeeEEEeecCccceee-EEEE
Q psy3272          63 SVSVSDRRLMETRGN------------KHTLTIKNVQ-STDFGNYSCVADNNLGRAKK-YMEL  111 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~------------~~~l~i~~~~-~~d~G~y~C~~~n~~~~~~~-~~~l  111 (115)
                      .|.|.|.+.|.+++.            ...|.|.++. .+|.|.|.|.|.|..|...+ .+.|
T Consensus        29 ~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          29 RANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL   91 (93)
T ss_pred             ccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence            677888888877542            1368898885 68999999999999998543 5544

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.80  E-value=8e-08  Score=51.11  Aligned_cols=61  Identities=26%  Similarity=0.349  Sum_probs=41.9

Q ss_pred             CCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCC--------------eEEEEEecc-----CCCCCeeeEEEeec
Q psy3272          40 TDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN--------------KHTLTIKNV-----QSTDFGNYSCVADN  100 (115)
Q Consensus        40 ~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~--------------~~~l~i~~~-----~~~d~G~y~C~~~n  100 (115)
                      .+...+.|.+             .|.|.|.+.|.+++.              ...+.|.++     ...|.|.|.|.|.|
T Consensus        14 g~~v~l~C~v-------------~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N   80 (95)
T cd05722          14 GGPVVLNCSA-------------EGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQN   80 (95)
T ss_pred             CCCEEEeeec-------------ccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEEC
Confidence            4456777877             556666666665432              123556555     57899999999999


Q ss_pred             C-ccce-eeEEEEEE
Q psy3272         101 N-LGRA-KKYMELSE  113 (115)
Q Consensus       101 ~-~~~~-~~~~~l~v  113 (115)
                      . .|.. ++.+.|.|
T Consensus        81 ~~~G~~~s~~~~l~v   95 (95)
T cd05722          81 DSLGSIVSRTARLTV   95 (95)
T ss_pred             CccCcEEEeeeEEeC
Confidence            9 8885 55766654

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=98.79  E-value=6.3e-08  Score=51.64  Aligned_cols=28  Identities=36%  Similarity=0.564  Sum_probs=24.1

Q ss_pred             cCCCCCeeeEEEeecCccc-eeeEEEEEE
Q psy3272          86 VQSTDFGNYSCVADNNLGR-AKKYMELSE  113 (115)
Q Consensus        86 ~~~~d~G~y~C~~~n~~~~-~~~~~~l~v  113 (115)
                      +..+|.|.|+|.|.|..|. .++.+.|.|
T Consensus        71 ~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          71 KGRSDEGVYVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             CCcCcCEEEEEEEEccccceecceEEEEe
Confidence            3689999999999999999 667777766

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.79  E-value=1.8e-07  Score=48.45  Aligned_cols=36  Identities=28%  Similarity=0.594  Sum_probs=31.5

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      ...|.|.++..+|.|.|.|.+.|..|..+.++.|.|
T Consensus        50 ~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~v   85 (85)
T cd05729          50 KWTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV   85 (85)
T ss_pred             EEEEEEeECCcccCEEEEEEEEECCceEEEEEEEeC
Confidence            346899999999999999999999999888877754

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.78  E-value=5.3e-08  Score=47.16  Aligned_cols=46  Identities=37%  Similarity=0.610  Sum_probs=35.6

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      |.+.|++++..+..  ...    .......|.|.++...|.|.|.|.+.+..
T Consensus        17 ~~v~W~~~~~~~~~--~~~----~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~   62 (63)
T smart00408       17 PNITWLKDGKPLPE--SNR----LSASGSTLTIKSVSLEDSGEYTCVAENSA   62 (63)
T ss_pred             CeEEEEECCEECCC--CCE----EecCCcEEEEeeCCcccCEEEEEEEecCC
Confidence            57999999887762  221    22356789999999999999999998754

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.78  E-value=2.6e-08  Score=51.34  Aligned_cols=55  Identities=18%  Similarity=0.211  Sum_probs=37.2

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcc
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR   55 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   55 (115)
                      +|.|+|||++.+++........-......+.|.|.....+|.+.|.|++.|....
T Consensus        14 ~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885          14 AATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             CCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence            3689999999999763211100000113467888888888889999999987644

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.78  E-value=7.3e-08  Score=50.21  Aligned_cols=62  Identities=27%  Similarity=0.360  Sum_probs=45.2

Q ss_pred             CCCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC---------CeEEEEEeccCCCCCeeeEEEeecCccceeeE
Q psy3272          38 QSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG---------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY  108 (115)
Q Consensus        38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~---------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~  108 (115)
                      ...+.-...|.+...            .|.+.+.|.+.+         ....|.|.++..+|+|.|.|.+.|..|.....
T Consensus        14 ~~G~~v~L~C~~~~~------------~~~~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~   81 (85)
T cd05754          14 RPGADVSFICRAKSK------------SPAYTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEAT   81 (85)
T ss_pred             cCCCCEEEEEEcCCC------------CCCcEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEE
Confidence            456677888887431            233444444432         13579999999999999999999999998887


Q ss_pred             EEE
Q psy3272         109 MEL  111 (115)
Q Consensus       109 ~~l  111 (115)
                      +.|
T Consensus        82 ~~l   84 (85)
T cd05754          82 ATL   84 (85)
T ss_pred             EEE
Confidence            665

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.77  E-value=5.5e-08  Score=51.55  Aligned_cols=42  Identities=21%  Similarity=0.212  Sum_probs=32.8

Q ss_pred             cCCcEEEEEeC-----------CeEEEEEeccCCCCCeeeEEEeecCccceee
Q psy3272          66 VSDRRLMETRG-----------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK  107 (115)
Q Consensus        66 ~~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~  107 (115)
                      |.|.+.|.+++           ....|.|.++..+|+|.|+|.+.|..+...-
T Consensus        28 ~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~   80 (92)
T cd05757          28 TLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQY   80 (92)
T ss_pred             CCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence            55666776654           2357999999999999999999998876433

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.77  E-value=1.3e-07  Score=48.43  Aligned_cols=45  Identities=29%  Similarity=0.309  Sum_probs=33.9

Q ss_pred             ecccCCcEEEEEeCC---------------eEEEEEeccCC----CCCeeeEEEeecCccceee
Q psy3272          63 SVSVSDRRLMETRGN---------------KHTLTIKNVQS----TDFGNYSCVADNNLGRAKK  107 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~---------------~~~l~i~~~~~----~d~G~y~C~~~n~~~~~~~  107 (115)
                      .|.|.|.+.|.+++.               ...|.|..+..    .|.|.|.|.|.|..|...+
T Consensus         8 ~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875           8 KGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             cccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            678888888877542               23688887642    3689999999999998444

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.76  E-value=1.1e-07  Score=50.88  Aligned_cols=33  Identities=39%  Similarity=0.604  Sum_probs=29.1

Q ss_pred             EEEEEeccCCCC-CeeeEEEeecCccceeeEEEE
Q psy3272          79 HTLTIKNVQSTD-FGNYSCVADNNLGRAKKYMEL  111 (115)
Q Consensus        79 ~~l~i~~~~~~d-~G~y~C~~~n~~~~~~~~~~l  111 (115)
                      ..|.|.++..+| .|.|.|.|.|..|.....+.|
T Consensus        64 s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          64 STLTISNTQESDFQTSYNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEECCccccccceeEEEEEEcCCCcccEEEEe
Confidence            479999999965 899999999999998888766

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.71  E-value=1.4e-07  Score=50.30  Aligned_cols=50  Identities=16%  Similarity=0.250  Sum_probs=34.5

Q ss_pred             cceEEEECCEE--------eCCCCCCCEEEEE-eCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           2 GMMSWYQDTFL--------IEPSVSDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~~~~~--------~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      |.|.|++.+..        ...  ..++.+.. ......|.|.+++.+|+|.|.|.+....
T Consensus        27 ~~v~W~~~~~~~l~~~~~~~~~--~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~   85 (95)
T cd07701          27 TSLQWSNPAQQTLYFDDKKALR--DNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMP   85 (95)
T ss_pred             eEEEEeCCCCeEEEEcCccccc--CCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeec
Confidence            68999864321        111  34555422 2345789999999999999999998643

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.70  E-value=5.7e-08  Score=50.86  Aligned_cols=38  Identities=37%  Similarity=0.464  Sum_probs=34.7

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEeC
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE  115 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~~  115 (115)
                      .+.|.|.++..+|+|.|+|.|.|..+.....+.|.|.|
T Consensus        49 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~~   86 (86)
T cd05862          49 SSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVHE   86 (86)
T ss_pred             eeEEEEecCCcccCEEEEEEEeecceEecccEEEEEeC
Confidence            46899999999999999999999999988888888875

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.70  E-value=4.1e-08  Score=52.29  Aligned_cols=50  Identities=26%  Similarity=0.400  Sum_probs=36.2

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      |.+.|++++.++......+..  .......|.|.+++.+|+|.|.|.+.+..
T Consensus        34 p~~~W~k~~~~~~~~~d~r~~--~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~   83 (96)
T cd05727          34 LSYRWLLNEFPNFIPEDGRRF--VSQTNGNLYIAKVEASDRGNYSCFVSSPS   83 (96)
T ss_pred             CEEEEEECCcccccccCCCeE--EeCCCCcEEEeecCHhhCceeEEEEEecc
Confidence            689999998754221122222  22346789999999999999999998765

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>smart00410 IG_like Immunoglobulin like

Probab=98.68  E-value=7.8e-07  Score=45.45  Aligned_cols=55  Identities=36%  Similarity=0.616  Sum_probs=42.5

Q ss_pred             cceEEEEC-CEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           2 GMMSWYQD-TFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         2 p~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      +.+.|+++ +..+..  ..++..........|.|.++...|.|.|.|.+.+..+....
T Consensus        24 ~~~~W~~~~~~~v~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~   79 (86)
T smart00410       24 PEVTWYKQGGKLLAE--SGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASS   79 (86)
T ss_pred             CeEEEEECCCEEcCC--CCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEE
Confidence            57899998 877764  56666554444678999999999999999999976655444

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.68  E-value=7.8e-07  Score=45.45  Aligned_cols=55  Identities=36%  Similarity=0.616  Sum_probs=42.5

Q ss_pred             cceEEEEC-CEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           2 GMMSWYQD-TFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         2 p~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      +.+.|+++ +..+..  ..++..........|.|.++...|.|.|.|.+.+..+....
T Consensus        24 ~~~~W~~~~~~~v~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~   79 (86)
T smart00409       24 PEVTWYKQGGKLLAE--SGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASS   79 (86)
T ss_pred             CeEEEEECCCEEcCC--CCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEE
Confidence            57899998 877764  56666554444678999999999999999999976655444

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.67  E-value=5.9e-07  Score=48.12  Aligned_cols=59  Identities=29%  Similarity=0.497  Sum_probs=44.8

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEe----CCeEEEEEecCCCCC-CeEEEEEeecCCcceeEEEE
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETR----GNKHTLTIKNVQSTD-FGNYSCVADNNLGRAKKYME   61 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d-~G~y~C~~~~~~~~~~~~~~   61 (115)
                      .|.|..++..+......++.+...    ...+.|.|.++...| .|.|.|.+.|..|.....+.
T Consensus        33 ~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~   96 (98)
T cd05898          33 RIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQ   96 (98)
T ss_pred             EEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEEE
Confidence            568998887776533467766543    367899999998777 68999999999988876443

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.66  E-value=1.1e-07  Score=50.35  Aligned_cols=51  Identities=18%  Similarity=0.406  Sum_probs=32.9

Q ss_pred             cceEEEECC--EEeCCC--CCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeec-CCcce
Q psy3272           2 GMMSWYQDT--FLIEPS--VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN-NLGRA   56 (115)
Q Consensus         2 p~v~W~~~~--~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~-~~~~~   56 (115)
                      |.|.|||..  ......  ...++..    ....|.|.++..+|+|.|.|.+.+ ..+..
T Consensus        25 p~v~Wykq~~g~~~~~~~~~~~r~~~----~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~   80 (91)
T cd05871          25 ASVKWLFQRGGDQRKEEVKTEERLIH----TERGLLLRSLQRSDAGVYTCTAVEHSFSQT   80 (91)
T ss_pred             ceEEEEEECCCCCccccccccccEEE----ecCeEEEeeCChhHCEEEEEEEEccCCeEE
Confidence            689999843  222110  0233332    235599999999999999999974 44433

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.66  E-value=3.4e-08  Score=48.63  Aligned_cols=46  Identities=26%  Similarity=0.447  Sum_probs=30.1

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCe--EEEEEecCCCCCCeEEEEEe
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNK--HTLTIKNVQSTDFGNYSCVA   49 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~y~C~~   49 (115)
                      +.+.|++++..+..  ............  ..|.|.+++.+|+|.|.|.+
T Consensus        17 ~~~~W~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen   17 TTVTWSKNGQSLPE--GSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             SEEEEEETTTTTSE--EEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             cEEEEEECCccccC--cceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            57999999875443  221111111111  13999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.66  E-value=2e-07  Score=50.12  Aligned_cols=53  Identities=17%  Similarity=0.242  Sum_probs=35.6

Q ss_pred             ceEEEECCEEeCCCCC-CCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcc
Q psy3272           3 MMSWYQDTFLIEPSVS-DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR   55 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   55 (115)
                      .|+|||++..+..... ..........+..|.|.++..+|+|.|.|.+.+...-
T Consensus        42 ~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C   95 (104)
T cd05896          42 SLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLRNSTYC   95 (104)
T ss_pred             eEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEECCCCcc
Confidence            6899999754433101 0000123335778999999999999999999986633

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.65  E-value=4.4e-07  Score=46.97  Aligned_cols=55  Identities=20%  Similarity=0.271  Sum_probs=41.4

Q ss_pred             CCCCCeEEEEEeecCCcceeEEEEEecccCC-cEEEEEeCC---------eEEEEEeccCCCCCeeeEEEeecCccceee
Q psy3272          38 QSTDFGNYSCVADNNLGRAKKYMELSVSVSD-RRLMETRGN---------KHTLTIKNVQSTDFGNYSCVADNNLGRAKK  107 (115)
Q Consensus        38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~-~~~~~~~~~---------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~  107 (115)
                      ...+...+.|.+             .|.|.| .+.|.+++.         ...|.|..+  .|.|.|.|.|.|..|...+
T Consensus        11 ~~G~~v~l~C~a-------------~G~P~P~~I~W~k~g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s   75 (81)
T cd05749          11 TANTPFNLTCQA-------------VGPPEPVEILWWQGGSPLGDPPAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTS   75 (81)
T ss_pred             cCCCCEEEEEEe-------------eeecCCeEEEEEECCEECCCCCCCCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence            345566778877             788888 688987653         335777776  4789999999999997543

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.64  E-value=1.6e-07  Score=49.96  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=30.1

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccc----eeeEEEEEEe
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGR----AKKYMELSEL  114 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~----~~~~~~l~v~  114 (115)
                      ..|.|.++..+|+|.|+|.+.+..+.    .++.+.|.|.
T Consensus        55 ~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~vtr~~~l~v~   94 (95)
T cd05897          55 TYLHIIDVSLNDSGYYTCKLQFTHEGKKYNITRIIKLRIV   94 (95)
T ss_pred             CEEEEEEcChhhCEEEEEEEEEeeCCEEEEEEEEEEEEEc
Confidence            46999999999999999999998754    5667777664

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.64  E-value=6.3e-07  Score=47.28  Aligned_cols=45  Identities=27%  Similarity=0.333  Sum_probs=33.1

Q ss_pred             ecccCCcEEEEEeCC-------------eEEEEEeccCC-CCCeeeEEEeecCccceee
Q psy3272          63 SVSVSDRRLMETRGN-------------KHTLTIKNVQS-TDFGNYSCVADNNLGRAKK  107 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~-------------~~~l~i~~~~~-~d~G~y~C~~~n~~~~~~~  107 (115)
                      .|.|.|.+.|.+++.             ...|.|.++.. +|.|.|+|.|.|..|....
T Consensus        29 ~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S   87 (91)
T cd04967          29 RGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLS   87 (91)
T ss_pred             eEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence            556677777766442             13678887774 8999999999999997443

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.64  E-value=5.6e-07  Score=51.16  Aligned_cols=28  Identities=25%  Similarity=0.464  Sum_probs=23.2

Q ss_pred             EEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272          31 TLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus        31 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|+|.+++.+|+|.|.|.+.+..+....
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~   29 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQ   29 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceee
Confidence            6899999999999999999876554444

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.64  E-value=5.7e-07  Score=47.95  Aligned_cols=51  Identities=20%  Similarity=0.268  Sum_probs=35.0

Q ss_pred             CcceEEEECCEEe-CC-----CCCCCEEEEE-eCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272           1 MGMMSWYQDTFLI-EP-----SVSDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus         1 ~p~v~W~~~~~~~-~~-----~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      .|.|.|++++..+ ..     ....++.+.. ......|.|.++..+|+|.|.|.+..
T Consensus        26 ~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882          26 NSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             CCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            3789999977532 10     0123443322 22357999999999999999999986

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.61  E-value=2.2e-07  Score=49.44  Aligned_cols=29  Identities=24%  Similarity=0.436  Sum_probs=24.8

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCCcce
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNLGRA   56 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~   56 (115)
                      ....|+|.++..+|+|.|.|.+.+..++.
T Consensus        63 g~~~L~I~~l~~sDsgtY~C~v~~~~~~~   91 (94)
T cd07690          63 GSFPLIIKNLKIEDSDTYICEVEDKKEEV   91 (94)
T ss_pred             CeEEEEECCCCHHHCEEEEEEECCccceE
Confidence            45679999999999999999998876554

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.59  E-value=8.9e-07  Score=47.20  Aligned_cols=34  Identities=24%  Similarity=0.378  Sum_probs=26.4

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEE
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS  112 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~  112 (115)
                      ...|.|.++..+|.|.|+|.+.. ....++...|.
T Consensus        61 ~~~L~I~nV~~~D~G~YtC~~~t-~~~~~~~~~~~   94 (95)
T cd05882          61 ELIISISNVQLSDEGEYTCSIFT-MPVRTAKATVT   94 (95)
T ss_pred             eEEEEECCCCcccCEEEEEEEEe-eccccEEEEEE
Confidence            56899999999999999999998 33444444444

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.53  E-value=3e-06  Score=45.37  Aligned_cols=75  Identities=25%  Similarity=0.354  Sum_probs=48.6

Q ss_pred             CCCCCCeEEEEEeecCC-cceeE----EEEEecccCCcEEEEEe----CCeEEEEEeccCCCC-CeeeEEEeecCcccee
Q psy3272          37 VQSTDFGNYSCVADNNL-GRAKK----YMELSVSVSDRRLMETR----GNKHTLTIKNVQSTD-FGNYSCVADNNLGRAK  106 (115)
Q Consensus        37 ~~~~d~G~y~C~~~~~~-~~~~~----~~~v~g~~~~~~~~~~~----~~~~~l~i~~~~~~d-~G~y~C~~~n~~~~~~  106 (115)
                      +...|.+...|.+.... .....    ...+......++.....    +..+.|.|.++...| .|.|.|.|.|.+|+..
T Consensus        13 ~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~   92 (98)
T cd05898          13 AVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGT   92 (98)
T ss_pred             EeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccce
Confidence            35678888999984322 11101    11122222234444332    356789999998877 6899999999999998


Q ss_pred             eEEEE
Q psy3272         107 KYMEL  111 (115)
Q Consensus       107 ~~~~l  111 (115)
                      ..+.|
T Consensus        93 ~~i~L   97 (98)
T cd05898          93 AIIQL   97 (98)
T ss_pred             EEEEe
Confidence            88776

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.49  E-value=1.2e-06  Score=46.39  Aligned_cols=37  Identities=24%  Similarity=0.465  Sum_probs=31.3

Q ss_pred             EEEEEeccCCCCCeeeEEEee-cCccceeeEEEEEEeC
Q psy3272          79 HTLTIKNVQSTDFGNYSCVAD-NNLGRAKKYMELSELE  115 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~-n~~~~~~~~~~l~v~~  115 (115)
                      ..|.|.++..+|+|.|.|.+. |..+.....+.|.|.+
T Consensus        53 ~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~~   90 (91)
T cd05871          53 RGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVIE   90 (91)
T ss_pred             CeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEec
Confidence            359999999999999999998 5666677788888864

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.49  E-value=1.6e-06  Score=44.82  Aligned_cols=50  Identities=16%  Similarity=0.290  Sum_probs=32.7

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeC-----CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRG-----NKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      |.|+|+++|.++..  ..........     ..+.|.|.....+|.|.|.|.+.+..
T Consensus        15 ~~v~W~~~g~~l~~--~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~   69 (82)
T cd05759          15 AEIIWFRDGEVLDG--ATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEA   69 (82)
T ss_pred             CEEEEEECCEEccC--ceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCcc
Confidence            58999999998764  2111111111     13567777776778889999998754

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.49  E-value=1.5e-06  Score=46.55  Aligned_cols=31  Identities=26%  Similarity=0.380  Sum_probs=26.0

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      ....|+|.+++.+|+|.|.|.+.+..+....
T Consensus        63 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~   93 (100)
T cd05713          63 GSVALRIHNVRASDEGLYTCFFQSDGFYEEA   93 (100)
T ss_pred             CcEEEEEEcCChhhCEEEEEEEecCCcEEEE
Confidence            3578999999999999999999976655554

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.48  E-value=5.5e-06  Score=44.45  Aligned_cols=56  Identities=13%  Similarity=0.100  Sum_probs=44.4

Q ss_pred             EEEEecccCCc-EEEEEeC--------------------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          59 YMELSVSVSDR-RLMETRG--------------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        59 ~~~v~g~~~~~-~~~~~~~--------------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .+.+.+.|.|. ..|.+.+                    -.+.|.|..+..+|.|.|+|.|.|...+.+.++.|.|.
T Consensus        24 ~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~  100 (101)
T cd05860          24 IVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVN  100 (101)
T ss_pred             EEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEe
Confidence            44457777776 6666432                    12479999999999999999999999999999988874

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.48  E-value=5.6e-07  Score=48.33  Aligned_cols=38  Identities=18%  Similarity=0.361  Sum_probs=33.9

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeec-CccceeeEEEEEEe
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADN-NLGRAKKYMELSEL  114 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n-~~~~~~~~~~l~v~  114 (115)
                      ....|.|.+++.+|.|.|+|.+.+ +.|+.+..+.|.|.
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V~   99 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTVY   99 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEEC
Confidence            456899999999999999999999 78888889999873

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.47  E-value=1.2e-06  Score=45.67  Aligned_cols=43  Identities=14%  Similarity=0.227  Sum_probs=34.0

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      +.+.|++++.++..  ..++...    ...|.|..++.+|+|.|.|.+.
T Consensus        25 A~v~W~~ng~~l~~--~~r~~~~----~~GLlI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872          25 ASPVWLFNGTPLNA--QFSYRVG----TDGLLILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             ccEEEEECCcccCC--CcceEEe----CCCCEEEECCHhhCEEEEEEEe
Confidence            47999999998876  5554332    3447799999999999999986

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.46  E-value=1.5e-06  Score=44.61  Aligned_cols=50  Identities=16%  Similarity=0.285  Sum_probs=36.2

Q ss_pred             CCCCCeEEEEEeecCCcceeEEEEEecccC-CcEEEEEeCC-----eEEEEEeccCCCCCeeeEEEeecC
Q psy3272          38 QSTDFGNYSCVADNNLGRAKKYMELSVSVS-DRRLMETRGN-----KHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~-~~~~~~~~~~-----~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ...|.-...|.+.             |.|. +.+.|.+++.     ...|.|.++ .+|+|.|+|.|.|.
T Consensus        13 ~~G~~V~L~C~~~-------------~~p~~~~~~W~kng~~l~~~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752          13 FQGEKVTLTCNGF-------------NSPEQNSTQWYHNGKLLETTTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             eCCCCEEEEEeCC-------------CCCCCccEEEEECCEEeeccCCeEEEeec-ccCCEEeEEECCCC
Confidence            4566667788863             3333 3467766553     347899999 99999999999986

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.45  E-value=2.1e-06  Score=45.03  Aligned_cols=36  Identities=28%  Similarity=0.361  Sum_probs=29.4

Q ss_pred             EEEEeccCCCCCeeeEEEeecCcc-ceeeEEEEEEeC
Q psy3272          80 TLTIKNVQSTDFGNYSCVADNNLG-RAKKYMELSELE  115 (115)
Q Consensus        80 ~l~i~~~~~~d~G~y~C~~~n~~~-~~~~~~~l~v~~  115 (115)
                      .|.|.++..+|+|.|.|.+.+..+ ....++.|.|.+
T Consensus        52 ~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~~   88 (89)
T cd04979          52 GLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVLE   88 (89)
T ss_pred             CEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEec
Confidence            589999999999999999987654 466678887753

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.44  E-value=1.2e-06  Score=45.89  Aligned_cols=56  Identities=34%  Similarity=0.440  Sum_probs=36.1

Q ss_pred             ceEEEECCEEeCCC--CCC-C-EEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           3 MMSWYQDTFLIEPS--VSD-R-RLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         3 ~v~W~~~~~~~~~~--~~~-~-~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .+.|...++.+...  ... + .........+.|.|.+++.+|+|.|.|.+.+..+....
T Consensus        19 ~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~   78 (86)
T cd05862          19 DFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKN   78 (86)
T ss_pred             EEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecc
Confidence            57998877643210  010 1 00011224678999999999999999999987765544

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.44  E-value=2e-06  Score=45.66  Aligned_cols=52  Identities=19%  Similarity=0.282  Sum_probs=33.4

Q ss_pred             cceEEEECCEEe-CC-----CCCCCEEEEE-eCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           2 GMMSWYQDTFLI-EP-----SVSDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~~~~~~-~~-----~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      |.+.|++.+..+ ..     ....++.+.. ......|.|.+++.+|+|.|.|.+....
T Consensus        27 ~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   85 (95)
T cd05717          27 SSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP   85 (95)
T ss_pred             ceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence            678998633211 00     0124444421 2235679999999999999999998655

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.41  E-value=2.6e-06  Score=46.77  Aligned_cols=38  Identities=21%  Similarity=0.355  Sum_probs=28.0

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEec
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSV   64 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g   64 (115)
                      .....|+|.+++.+|+|.|.|.+.........  .|.|.|
T Consensus        71 ~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          71 PSDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             CCCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            35789999999999999999999865333332  444433

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.37  E-value=2.2e-06  Score=44.54  Aligned_cols=36  Identities=17%  Similarity=0.271  Sum_probs=28.9

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccc-eeeEEEEEE
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGR-AKKYMELSE  113 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~-~~~~~~l~v  113 (115)
                      ...|.|.+++.+|+|.|+|.+.+..+. .+..+.|.|
T Consensus        47 ~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~   83 (83)
T cd05753          47 NSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV   83 (83)
T ss_pred             CceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence            357999999999999999999999976 444555543

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.37  E-value=1.6e-06  Score=46.42  Aligned_cols=37  Identities=27%  Similarity=0.368  Sum_probs=33.1

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      ....|.|.+++.+|+|.|+|.+.|..+..+..+.|.|
T Consensus        63 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          63 GSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             CcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence            4568999999999999999999998888888888877

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.33  E-value=7.2e-06  Score=43.69  Aligned_cols=37  Identities=19%  Similarity=0.222  Sum_probs=28.9

Q ss_pred             CCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          76 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        76 ~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      .....|.|.++..+|+|.|+|.+.+..+ .+....|.|
T Consensus        59 ~~~~sL~I~~v~~~DsG~Y~C~~~t~~~-~~~~~~l~v   95 (95)
T cd07701          59 WHELSISISDVSLSDEGQYTCSLFTMPV-KTSKAYLTV   95 (95)
T ss_pred             CCcEEEEECcCCcccCEEEEEEeEeecC-ccEEEEEEC
Confidence            3557899999999999999999998533 355666654

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.33  E-value=2.3e-06  Score=46.01  Aligned_cols=37  Identities=22%  Similarity=0.353  Sum_probs=32.3

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeec-CccceeeEEEEEE
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADN-NLGRAKKYMELSE  113 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n-~~~~~~~~~~l~v  113 (115)
                      ....|.|.+++.+|+|.|.|.+.+ +.|+.+..+.|.|
T Consensus        62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence            456799999999999999999997 7777788888887

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.31  E-value=1e-06  Score=47.00  Aligned_cols=28  Identities=32%  Similarity=0.547  Sum_probs=24.7

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccce
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRA  105 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~  105 (115)
                      .+.|.|.++..+|+|.|.|.|+|.....
T Consensus        59 ~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          59 NGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             CCcEEEeecCHhhCceeEEEEEecccCC
Confidence            4579999999999999999999987653

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.28  E-value=2.9e-06  Score=45.99  Aligned_cols=38  Identities=21%  Similarity=0.378  Sum_probs=34.2

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ....|.|.++..+|+|.|.|.+.+..+..+..+.|.|.
T Consensus        66 ~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          66 LDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             CcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEE
Confidence            45679999999999999999999999988889888875

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.28  E-value=1.9e-06  Score=43.85  Aligned_cols=44  Identities=39%  Similarity=0.644  Sum_probs=32.7

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCccee
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK   57 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~   57 (115)
                      +.+.|++++..+..  ..        ..  +.+..+..+|.|.|.|.+.+..+...
T Consensus        29 ~~~~w~~~~~~~~~--~~--------~~--~~~~~~~~~~~g~y~C~~~~~~~~~~   72 (80)
T PF13895_consen   29 PQVQWYKNGSPINS--SQ--------NG--LFIPNVSPEDSGNYTCRASNGSGSNT   72 (80)
T ss_dssp             SEEEEEETTEEEEE--ES--------SE--EEESSEEGGGTEEEEEEEEETTEEEE
T ss_pred             eeeeeeeeeeeeee--ee--------ee--eeeeeeccccCEEEEEEEEeCCCCeE
Confidence            47899999887764  11        11  66788889999999999988664333

...

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.27  E-value=2.8e-06  Score=46.02  Aligned_cols=39  Identities=21%  Similarity=0.372  Sum_probs=34.4

Q ss_pred             CCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          76 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        76 ~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .....|.|.+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus        65 ~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~  103 (106)
T cd05714          65 PGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVR  103 (106)
T ss_pred             CCcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEE
Confidence            356789999999999999999999988878888888875

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.27  E-value=1.1e-05  Score=42.91  Aligned_cols=31  Identities=32%  Similarity=0.534  Sum_probs=24.6

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeec-CCcceeE
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADN-NLGRAKK   58 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~-~~~~~~~   58 (115)
                      ....|+|.+++.+|+|.|.|.+.. ..+....
T Consensus        60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~   91 (98)
T cd05718          60 EDATISISNLRLEDEGNYICEFATFPQGNRQK   91 (98)
T ss_pred             CceEEEEccCCcccCEEEEEEEEeCCCCcEEE
Confidence            467899999999999999999875 3344444

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.27  E-value=1.3e-05  Score=43.37  Aligned_cols=36  Identities=22%  Similarity=0.450  Sum_probs=28.0

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEe
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELS   63 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~   63 (115)
                      ....|.|.+++.+|+|.|.|.+.+..+....  .|.|.
T Consensus        66 ~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          66 LDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             CcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEE
Confidence            3568999999999999999999876655554  44443

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.24  E-value=5e-06  Score=44.30  Aligned_cols=38  Identities=32%  Similarity=0.487  Sum_probs=33.0

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeec-CccceeeEEEEEEe
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADN-NLGRAKKYMELSEL  114 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n-~~~~~~~~~~l~v~  114 (115)
                      ....|.|.++..+|+|.|.|.+.. +.|..+..+.|.|+
T Consensus        60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V~   98 (98)
T cd05718          60 EDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTVL   98 (98)
T ss_pred             CceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEeC
Confidence            456899999999999999999874 67888889888874

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.22  E-value=2.2e-05  Score=41.86  Aligned_cols=51  Identities=18%  Similarity=0.245  Sum_probs=34.8

Q ss_pred             ceEEEECCEEeC------CCCCCCEEEEE-eCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIE------PSVSDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~------~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .+.|++.+..+.      ....+|+.... ......|+|.+++.+|+|.|.|.+....
T Consensus        28 ~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p   85 (95)
T cd05881          28 VIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTDP   85 (95)
T ss_pred             EEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEccc
Confidence            467776554321      00256666554 3456789999999999999999997543

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.22  E-value=4e-06  Score=44.63  Aligned_cols=49  Identities=24%  Similarity=0.319  Sum_probs=35.9

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCe-EEEEEeecCC
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFG-NYSCVADNNL   53 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~   53 (115)
                      .|.|.|++++..... ...|+.+   .....|.|.++..+|.| .|.|.+.+..
T Consensus        33 ~P~i~W~~~~~~~i~-~~~Ri~~---~~~GnL~fs~v~~~D~g~~Y~C~a~~~~   82 (95)
T cd05845          33 PLRIYWMNSDLLHIT-QDERVSM---GQNGNLYFANVEEQDSHPDYICHAHFPG   82 (95)
T ss_pred             CCEEEEECCCCcccc-ccccEEE---CCCceEEEEEEehhhCCCCeEEEEEccc
Confidence            378999987654222 1444433   34588999999999999 8999998765

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.21  E-value=1.6e-05  Score=38.17  Aligned_cols=26  Identities=54%  Similarity=0.846  Sum_probs=23.0

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCcc
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLG  103 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~  103 (115)
                      ...|.|.++...|.|.|+|.+.|..|
T Consensus        38 ~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408       38 GSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CcEEEEeeCCcccCEEEEEEEecCCC
Confidence            44799999999999999999998764

>PHA03376 BARF1; Provisional

Probab=98.18  E-value=2.9e-05  Score=46.08  Aligned_cols=31  Identities=19%  Similarity=0.269  Sum_probs=25.6

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEeecCCccee
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAK   57 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~   57 (115)
                      .++..|.|.+++.+|.|.|.|.+........
T Consensus        84 ~gnvsLvI~~l~lSDdGtY~C~fQkge~~~~  114 (221)
T PHA03376         84 ANTFFLVVTAANISHDGNYLCRMKLGETEVT  114 (221)
T ss_pred             CCeEEEEEEeeeecCCceEEEEEEcCCCcee
Confidence            4678899999999999999999986554443

>smart00409 IG Immunoglobulin

Probab=98.18  E-value=2.7e-05  Score=39.57  Aligned_cols=45  Identities=38%  Similarity=0.552  Sum_probs=35.6

Q ss_pred             cEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          69 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        69 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      ++.+........|.|.++..+|.|.|.|.+.+..+.....+.|.|
T Consensus        41 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V   85 (86)
T smart00409       41 RFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV   85 (86)
T ss_pred             cEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence            344444444578999999999999999999998888777777766

>smart00410 IG_like Immunoglobulin like

Probab=98.18  E-value=2.7e-05  Score=39.57  Aligned_cols=45  Identities=38%  Similarity=0.552  Sum_probs=35.6

Q ss_pred             cEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          69 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        69 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      ++.+........|.|.++..+|.|.|.|.+.+..+.....+.|.|
T Consensus        41 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V   85 (86)
T smart00410       41 RFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV   85 (86)
T ss_pred             cEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence            344444444578999999999999999999998888777777766

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.12  E-value=1.1e-05  Score=44.07  Aligned_cols=39  Identities=21%  Similarity=0.360  Sum_probs=34.0

Q ss_pred             CCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          76 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        76 ~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .....|.|.+++.+|.|.|.|.+.......+..+.|.|.
T Consensus        69 ~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~  107 (110)
T cd05878          69 RGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVT  107 (110)
T ss_pred             CCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence            356789999999999999999999987778888888875

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.11  E-value=1.6e-05  Score=43.64  Aligned_cols=38  Identities=24%  Similarity=0.387  Sum_probs=33.3

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ....|.|.+++.+|+|.|+|.+.+........+.|.|.
T Consensus        72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          72 SDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             CCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            56789999999999999999999888888888877774

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.10  E-value=3.5e-05  Score=41.14  Aligned_cols=30  Identities=27%  Similarity=0.416  Sum_probs=25.0

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEeecCCcce
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVADNNLGRA   56 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~   56 (115)
                      .....|+|.+++.+|+|.|.|.+....+..
T Consensus        58 ~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~   87 (97)
T cd05775          58 QNDYSLQISNLKMEDAGSYRAEINTKNGVT   87 (97)
T ss_pred             CCceeEEECCCchHHCEEEEEEEEcCCCCe
Confidence            446889999999999999999998665444

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.10  E-value=1.4e-05  Score=42.61  Aligned_cols=38  Identities=29%  Similarity=0.444  Sum_probs=32.9

Q ss_pred             CeEEEEEeccCCCCCeeeEEEe-ecCccceeeEEEEEEe
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVA-DNNLGRAKKYMELSEL  114 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~-~n~~~~~~~~~~l~v~  114 (115)
                      ....|.|.+++.+|.|.|+|.+ ..+.|+.+..+.|.|+
T Consensus        58 ~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~~   96 (96)
T cd05887          58 LDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTVL   96 (96)
T ss_pred             CccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEEC
Confidence            4568999999999999999996 5778888889888874

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.09  E-value=3.9e-05  Score=38.91  Aligned_cols=62  Identities=26%  Similarity=0.369  Sum_probs=42.2

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCCe-----EEEEEeccCCCCCeeeEEEeecCcc-ceeeEEEEE
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGNK-----HTLTIKNVQSTDFGNYSCVADNNLG-RAKKYMELS  112 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~-----~~l~i~~~~~~d~G~y~C~~~n~~~-~~~~~~~l~  112 (115)
                      ..+.-...|.+             .|.|.+.+.|...+..     ..+.+..+..+|.|.|+|.+.+..+ ..+..+.|.
T Consensus        13 ~g~~~~l~C~~-------------~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~   79 (80)
T PF13895_consen   13 EGDSVTLTCSV-------------SGNPPPQVQWYKNGSPINSSQNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVT   79 (80)
T ss_dssp             TTSEEEEEEEE-------------ESSSSSEEEEEETTEEEEEESSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCcEEEEEEE-------------EcccceeeeeeeeeeeeeeeeeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEee
Confidence            45556677776             3455566666654321     1267788899999999999999654 466677776


Q ss_pred             E
Q psy3272         113 E  113 (115)
Q Consensus       113 v  113 (115)
                      |
T Consensus        80 V   80 (80)
T PF13895_consen   80 V   80 (80)
T ss_dssp             E
T ss_pred             C
Confidence            5

...

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.08  E-value=2.5e-05  Score=43.14  Aligned_cols=28  Identities=25%  Similarity=0.478  Sum_probs=24.5

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVADNNLG   54 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~   54 (115)
                      ....+|.|.+++.+|.|.|.|.+.+...
T Consensus        77 ~~daSI~I~nv~~sD~G~Y~C~v~n~p~  104 (116)
T cd05879          77 RKDGSIVIHNLDYTDNGTFTCDVKNPPD  104 (116)
T ss_pred             cCeeEEEEccCCcccCEEEEEEEEcCCC
Confidence            4568899999999999999999997653

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.07  E-value=0.00012  Score=40.49  Aligned_cols=35  Identities=20%  Similarity=0.472  Sum_probs=27.5

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL   62 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v   62 (115)
                      ...+|.|.+++.+|+|.|.|.+.........  .|+|
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V  113 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDV  113 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEE
Confidence            5789999999999999999999866544444  4444

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.05  E-value=2.1e-05  Score=42.32  Aligned_cols=37  Identities=27%  Similarity=0.308  Sum_probs=27.8

Q ss_pred             CCCEEEEEeC--CeEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272          18 SDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNNLG   54 (115)
Q Consensus        18 ~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~~~~~   54 (115)
                      ..++.+....  ....|+|.+++.+|+|.|.|.+.+..+
T Consensus        53 ~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~   91 (105)
T cd00099          53 KGRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLSGG   91 (105)
T ss_pred             CCcEEEEEeccCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence            3455444333  567899999999999999999986553

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.05  E-value=5.5e-05  Score=40.39  Aligned_cols=34  Identities=26%  Similarity=0.445  Sum_probs=25.9

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecC-CcceeEEEE
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNN-LGRAKKYME   61 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~-~~~~~~~~~   61 (115)
                      ...+|.|.+++.+|+|.|.|.+... .|...+.+.
T Consensus        58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~   92 (96)
T cd05889          58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIE   92 (96)
T ss_pred             CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEE
Confidence            4688999999999999999999764 343333433

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.05  E-value=3.5e-05  Score=40.48  Aligned_cols=25  Identities=24%  Similarity=0.319  Sum_probs=22.5

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCC
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      ...|.|.+++.+|+|.|.|.+....
T Consensus        56 ~~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741          56 NGSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             CceEEEccCCchhcEEEEEEEEcCC
Confidence            4789999999999999999998654

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.01  E-value=3.8e-05  Score=45.43  Aligned_cols=51  Identities=24%  Similarity=0.420  Sum_probs=34.5

Q ss_pred             cceEEEECCEEeC----------CCCCCCEE-EEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           2 GMMSWYQDTFLIE----------PSVSDRRL-METRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         2 p~v~W~~~~~~~~----------~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      +.|+|+|..+.+.          ..-.+|+. +........|+|++++.+|+|.|.|.+..-
T Consensus        46 ~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tf  107 (189)
T PHA02987         46 ILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTL  107 (189)
T ss_pred             ceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEEEec
Confidence            5789998643221          10023443 233446788999999999999999999754

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.00  E-value=4.8e-05  Score=40.46  Aligned_cols=30  Identities=23%  Similarity=0.410  Sum_probs=25.9

Q ss_pred             CCeEEEEEeccCCCCCeeeEEEeecCccce
Q psy3272          76 GNKHTLTIKNVQSTDFGNYSCVADNNLGRA  105 (115)
Q Consensus        76 ~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~  105 (115)
                      ...+.|.|.++..+|+|.|.|.+.|..+..
T Consensus        62 ~g~~~L~I~~l~~sDsgtY~C~v~~~~~~~   91 (94)
T cd07690          62 QGSFPLIIKNLKIEDSDTYICEVEDKKEEV   91 (94)
T ss_pred             CCeEEEEECCCCHHHCEEEEEEECCccceE
Confidence            345789999999999999999999987653

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.00  E-value=2.6e-05  Score=41.37  Aligned_cols=36  Identities=22%  Similarity=0.316  Sum_probs=28.4

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      ....|.|.+++.+|+|.|+|.+.+... .+..+.|.|
T Consensus        60 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~-~~~~~~~~v   95 (95)
T cd05717          60 NELSISISNVSLSDEGRYTCSLYTMPV-QTAKATVTV   95 (95)
T ss_pred             CeeEEEEccCCcccCEEEEEEEecCCC-ceEEEEEEC
Confidence            456899999999999999999998763 355555554

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=97.99  E-value=5.1e-05  Score=39.12  Aligned_cols=42  Identities=12%  Similarity=-0.023  Sum_probs=33.4

Q ss_pred             ecccCCcEEEEEeCC-----------------eEEEEEeccCCCCCeeeEEEeecCccc
Q psy3272          63 SVSVSDRRLMETRGN-----------------KHTLTIKNVQSTDFGNYSCVADNNLGR  104 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~-----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~  104 (115)
                      .|.|++.+.|+.++.                 ...|.|......|.+.|+|.|.|..+.
T Consensus        10 ~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885          10 RSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             CccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence            567788888877542                 236888888888889999999999876

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=97.99  E-value=2.8e-05  Score=40.77  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=21.3

Q ss_pred             EEEEeccCCCCCeeeEEEeecCc
Q psy3272          80 TLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        80 ~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      .|.|.+++.+|+|.|+|.+.+..
T Consensus        49 ~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873          49 GLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             cEEEeCCCHHHCEEEEEEEEecc
Confidence            59999999999999999999874

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=97.99  E-value=6.2e-05  Score=40.86  Aligned_cols=26  Identities=27%  Similarity=0.294  Sum_probs=22.8

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      ...+|.|.+++.+|+|.|.|.+.+..
T Consensus        68 ~ngSL~I~~v~~~D~G~Y~~~v~~~~   93 (105)
T cd05774          68 PNGSLLIQNVTQKDTGFYTLQTITTN   93 (105)
T ss_pred             CCCcEEEecCCcccCEEEEEEEEeCC
Confidence            34689999999999999999998765

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.98  E-value=8e-05  Score=39.76  Aligned_cols=27  Identities=30%  Similarity=0.327  Sum_probs=23.0

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      ....+|.|.+++.+|.|.|.|.+....
T Consensus        57 ~~d~sl~i~nv~~~D~G~Y~C~v~tfP   83 (96)
T cd05887          57 LLDATIMLENVGFSDIGVYICKAVTFP   83 (96)
T ss_pred             CCccEEEEeCCCccccEEEEEEEEeCC
Confidence            346799999999999999999997543

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.98  E-value=8.6e-05  Score=38.45  Aligned_cols=49  Identities=14%  Similarity=0.202  Sum_probs=30.8

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEE---eCCeEEEEEecCCCCCCe-EEEEEeecCC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMET---RGNKHTLTIKNVQSTDFG-NYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~G-~y~C~~~~~~   53 (115)
                      +.|+|||++.++...  .......   ....+.|.|.. +.+|.| .|+|++.+..
T Consensus        15 A~I~W~k~~~~l~~~--~~~~~~~~~~~t~~S~L~~~p-~~eDdG~~~~C~a~~~~   67 (82)
T cd05883          15 ATIRWFKGNKELTGK--STVEETWSRMFTVTSQLMLKV-TKEDDGVPVICLVDHPA   67 (82)
T ss_pred             CEEEEEECCEECcCc--ccceeccCCCcEEEEEEEEEC-chhhCCCEEEEEEcCcc
Confidence            589999999998762  1111011   11346677744 455555 8999998754

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=97.98  E-value=9e-05  Score=39.81  Aligned_cols=56  Identities=13%  Similarity=0.153  Sum_probs=39.2

Q ss_pred             eEEEECCEEeCCCCCCCEEEEEe---CCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272           4 MSWYQDTFLIEPSVSDRRLMETR---GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY   59 (115)
Q Consensus         4 v~W~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   59 (115)
                      +.|.+++..+.......+.....   .-.+.|.+..+..+|.|.|+|.+.|........
T Consensus        36 ~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~t   94 (101)
T cd05860          36 QQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVT   94 (101)
T ss_pred             eEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEE
Confidence            89999987665421211211111   124789999999999999999999988776663

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.98  E-value=3.5e-05  Score=42.56  Aligned_cols=38  Identities=21%  Similarity=0.392  Sum_probs=34.1

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ....|.|.+++..|+|.|.|.+.+.....+..+.|.|.
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            45789999999999999999999998888888888874

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=97.97  E-value=5.6e-05  Score=40.38  Aligned_cols=39  Identities=26%  Similarity=0.334  Sum_probs=32.2

Q ss_pred             eCCeEEEEEeccCCCCCeeeEEEeecCccc-eeeEEEEEE
Q psy3272          75 RGNKHTLTIKNVQSTDFGNYSCVADNNLGR-AKKYMELSE  113 (115)
Q Consensus        75 ~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~-~~~~~~l~v  113 (115)
                      ......|.|.+++.+|+|.|.|.+.+..+. ....+.|.|
T Consensus        57 ~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          57 SQNDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence            445678999999999999999999988876 455777766

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.97  E-value=2.2e-05  Score=42.96  Aligned_cols=38  Identities=16%  Similarity=0.318  Sum_probs=33.4

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ....|.|.+++.+|+|.|.|.+.....-.+..+.|.|.
T Consensus        70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence            46789999999999999999999977778888888774

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=97.96  E-value=4.9e-05  Score=41.22  Aligned_cols=36  Identities=19%  Similarity=0.202  Sum_probs=27.0

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      ..++.+...  .....|+|.+++.+|+|.|.|.+.+..
T Consensus        56 ~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~   93 (109)
T cd04983          56 KGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSESG   93 (109)
T ss_pred             CCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence            344544322  357789999999999999999998643

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=97.96  E-value=3.1e-05  Score=41.57  Aligned_cols=30  Identities=20%  Similarity=0.369  Sum_probs=24.7

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecC-Cccee
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNN-LGRAK   57 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~-~~~~~   57 (115)
                      ...+|.|++++.+|+|.|.|.+.+. .+...
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~   91 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTGNRE   91 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCCCeE
Confidence            4588999999999999999999983 44333

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.95  E-value=1.7e-05  Score=42.19  Aligned_cols=43  Identities=23%  Similarity=0.200  Sum_probs=32.7

Q ss_pred             ecccCCcEEEEEeC-------------CeEEEEEeccCCCCCe-eeEEEeecCccce
Q psy3272          63 SVSVSDRRLMETRG-------------NKHTLTIKNVQSTDFG-NYSCVADNNLGRA  105 (115)
Q Consensus        63 ~g~~~~~~~~~~~~-------------~~~~l~i~~~~~~d~G-~y~C~~~n~~~~~  105 (115)
                      .|.|.|.+.|...+             ..+.|.|.++..+|.| .|.|.|.|.....
T Consensus        29 ~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~   85 (95)
T cd05845          29 KSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLRT   85 (95)
T ss_pred             CCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccccc
Confidence            45666666665432             2358999999999999 8999999987653

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=97.94  E-value=8.1e-05  Score=40.71  Aligned_cols=35  Identities=23%  Similarity=0.457  Sum_probs=26.8

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL   62 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v   62 (115)
                      ....|+|.+++.+|+|.|.|.+.........  .|+|
T Consensus        70 ~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V  106 (110)
T cd05878          70 GDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEV  106 (110)
T ss_pred             CcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEE
Confidence            5678999999999999999999865433333  4444

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=97.94  E-value=2.1e-05  Score=41.51  Aligned_cols=46  Identities=15%  Similarity=0.232  Sum_probs=32.5

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      +.+.|+|+|.....  ...   ........+.|.+++.+|+|.|.|.+.+.
T Consensus        30 ~~f~l~k~g~~~~~--~~~---~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          30 VEYRLYREGSTFAV--KKP---PEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CEEEEEECCCCccc--ccc---CCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            35788888875443  110   11234677999999999999999999764

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.94  E-value=6.3e-05  Score=40.11  Aligned_cols=26  Identities=35%  Similarity=0.501  Sum_probs=22.6

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      ....|.|.+++.+|+|.|.|.+....
T Consensus        59 ~~~sL~I~nv~~~D~G~Y~C~~~~~p   84 (97)
T cd05846          59 NSTSITIWNVTLEDEGCYKCIFNTFP   84 (97)
T ss_pred             CccEEEEeCCceeeeEEEEEEEEeCC
Confidence            46789999999999999999987543

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=97.93  E-value=1.4e-05  Score=40.01  Aligned_cols=25  Identities=48%  Similarity=0.837  Sum_probs=22.0

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      .....|.|.++..+|.|.|+|.+.|
T Consensus        51 ~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   51 SSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             ceeeEEEEccCCHHhCcEEEEEEEC
Confidence            3578899999999999999999875

...

>PHA02633 hypothetical protein; Provisional

Probab=97.92  E-value=5.5e-05  Score=36.65  Aligned_cols=38  Identities=24%  Similarity=0.315  Sum_probs=32.4

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ....|-|-++..+|+|.|.|...|..--.+.++.|.|.
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~   53 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC   53 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence            34568899999999999999999988778888888774

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=97.91  E-value=4e-05  Score=42.36  Aligned_cols=44  Identities=20%  Similarity=0.268  Sum_probs=32.0

Q ss_pred             cEEEEEe--CCeEEEEEeccCCCCCeeeEEEeecCccc--eeeEEEEE
Q psy3272          69 RRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLGR--AKKYMELS  112 (115)
Q Consensus        69 ~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n~~~~--~~~~~~l~  112 (115)
                      +..|..+  .....+.|.+++.+|.|.|+|.+.|.-+.  ....+.|.
T Consensus        68 Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~  115 (116)
T cd05879          68 RIEWVGNPSRKDGSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLY  115 (116)
T ss_pred             ceEEeCCCCcCeeEEEEccCCcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence            4444432  25678999999999999999999998774  33355554

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=97.88  E-value=4.1e-05  Score=41.44  Aligned_cols=36  Identities=19%  Similarity=0.422  Sum_probs=28.1

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL   62 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v   62 (115)
                      .....|+|.+++.+|+|.|.|.+.+..+....  .|.|
T Consensus        65 ~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V  102 (106)
T cd05714          65 PGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEV  102 (106)
T ss_pred             CCcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEE
Confidence            35688999999999999999999876554444  4444

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=97.88  E-value=4.3e-05  Score=41.21  Aligned_cols=35  Identities=26%  Similarity=0.345  Sum_probs=30.1

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      ..|.|.++..+|+|.|+|.+.|...-.+..+.|.|
T Consensus        70 ~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          70 DSIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             CEEEEEeCChhhCeEEEEEECCCCcceEEEEEEEC
Confidence            46999999999999999999998877777777664

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=97.84  E-value=5.6e-05  Score=39.69  Aligned_cols=34  Identities=24%  Similarity=0.270  Sum_probs=27.8

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccc-eeeEEEEE
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGR-AKKYMELS  112 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~-~~~~~~l~  112 (115)
                      ..|.|.+++.+|+|.|.|.+....+. ....+.|.
T Consensus        57 ~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~   91 (92)
T cd05741          57 GSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLR   91 (92)
T ss_pred             ceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEE
Confidence            67999999999999999999988754 44455554

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.83  E-value=6.3e-05  Score=40.12  Aligned_cols=37  Identities=32%  Similarity=0.397  Sum_probs=31.6

Q ss_pred             CeEEEEEeccCCCCCeeeEEEee-cCccceeeEEEEEE
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVAD-NNLGRAKKYMELSE  113 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~-n~~~~~~~~~~l~v  113 (115)
                      ....|.|.+++.+|+|.|.|... .+.|..+..+.|.|
T Consensus        59 ~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          59 NSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             CccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence            45689999999999999999987 56677777888877

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=97.82  E-value=6.1e-05  Score=40.90  Aligned_cols=35  Identities=23%  Similarity=0.185  Sum_probs=28.6

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCcc-ceeeEEEEEE
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLG-RAKKYMELSE  113 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~-~~~~~~~l~v  113 (115)
                      .+|.|.+++.+|+|.|+|.+.+... ..+..+.|.|
T Consensus        70 gSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~V  105 (105)
T cd05774          70 GSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQV  105 (105)
T ss_pred             CcEEEecCCcccCEEEEEEEEeCCccEEEEEEEEEC
Confidence            3799999999999999999999874 4555666654

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.82  E-value=0.001  Score=35.49  Aligned_cols=35  Identities=23%  Similarity=0.380  Sum_probs=27.9

Q ss_pred             CCcEEEEE-eCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          67 SDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        67 ~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ++++.... ++....|.|.++..+|.|.|.|.+...
T Consensus        49 d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881          49 DSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            44555554 456778999999999999999999863

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.80  E-value=0.00028  Score=36.62  Aligned_cols=50  Identities=10%  Similarity=0.267  Sum_probs=29.7

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCC-----eEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGN-----KHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      +.|+|+++|.++..  ...........     .+.|.+.....++...|.|.+.+..
T Consensus        15 ~~ItW~k~g~~l~~--~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~   69 (83)
T cd07705          15 ANIKWRKGDQELEG--APTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHES   69 (83)
T ss_pred             CEeEEEECCEECCC--cceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcc
Confidence            48999999998865  22111111111     2344554444555579999998755

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.80  E-value=0.00014  Score=39.81  Aligned_cols=35  Identities=17%  Similarity=0.392  Sum_probs=26.9

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL   62 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v   62 (115)
                      ...+|.|.+++.+|+|.|.|.+.........  .|+|
T Consensus        70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V  106 (110)
T cd05902          70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEV  106 (110)
T ss_pred             ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEE
Confidence            5789999999999999999999875533333  4444

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.80  E-value=7.2e-05  Score=41.20  Aligned_cols=37  Identities=27%  Similarity=0.388  Sum_probs=28.9

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCccc--eeeEEEEEE
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNLGR--AKKYMELSE  113 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~--~~~~~~l~v  113 (115)
                      ....|.|.++..+|+|.|.|.+.|..+.  ....+.|.|
T Consensus        78 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~  116 (116)
T cd05715          78 KDASIVIHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLRV  116 (116)
T ss_pred             CeeEEEEeeCCcccCEEEEEEEEeCCCCCCCccEEEEeC
Confidence            4578999999999999999999988664  233555543

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd00096 Ig Immunoglobulin domain

Probab=97.80  E-value=0.00013  Score=35.24  Aligned_cols=52  Identities=35%  Similarity=0.512  Sum_probs=34.8

Q ss_pred             cceEEEECCEEeCCCCCC--CEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           2 GMMSWYQDTFLIEPSVSD--RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      +.+.|++++.........  ............|.|.++...|.|.|.|.+....
T Consensus        13 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096          13 PTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            578999988765431100  0111122346778999999999999999998654

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=97.73  E-value=0.00015  Score=37.46  Aligned_cols=49  Identities=12%  Similarity=0.200  Sum_probs=29.2

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeC-----CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRG-----NKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      |.|+|+++++++..  ... ......     ..+.|.+.....++.+.|.|.+.+..
T Consensus        15 ~~v~W~~~~~~l~~--~~~-~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~   68 (82)
T cd05761          15 ATIRWFKGDKELKG--VKL-KEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPA   68 (82)
T ss_pred             CeEEEEECCEEccC--cee-eEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChh
Confidence            58999999998865  221 111111     12345554444445569999998754

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.72  E-value=0.00026  Score=37.71  Aligned_cols=33  Identities=33%  Similarity=0.442  Sum_probs=26.6

Q ss_pred             CCEEEEEeCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          19 DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        19 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      .++..........|+|.+++++|+|.|.|.+.+
T Consensus        52 ~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~   84 (98)
T cd04984          52 DRFSGSKSGNTASLTISGAQTEDEADYYCQVWD   84 (98)
T ss_pred             CCEEEEccCCEEEEEECCCChhhCEEEEEEEcc
Confidence            456655555677899999999999999999864

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=97.71  E-value=0.00016  Score=35.27  Aligned_cols=18  Identities=56%  Similarity=0.951  Sum_probs=17.3

Q ss_pred             EEEeccCCCCCeeeEEEe
Q psy3272          81 LTIKNVQSTDFGNYSCVA   98 (115)
Q Consensus        81 l~i~~~~~~d~G~y~C~~   98 (115)
                      |.|.++..+|+|.|+|.|
T Consensus        47 L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen   47 LTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             EEESSCTGGGTEEEEEEE
T ss_pred             EEEccCCHHHCEEEEEEC
Confidence            999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=97.69  E-value=0.00055  Score=36.05  Aligned_cols=26  Identities=23%  Similarity=0.437  Sum_probs=23.1

Q ss_pred             CCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          76 GNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        76 ~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      +....+.|.+++.+|+|.|+|...+.
T Consensus        50 ~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          50 QNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             ceeEEEEccCCChhHCEEEEEEEECC
Confidence            34567999999999999999999987

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=97.67  E-value=0.00012  Score=40.30  Aligned_cols=36  Identities=25%  Similarity=0.372  Sum_probs=28.3

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCccc--eeeEEEEE
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNLGR--AKKYMELS  112 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~--~~~~~~l~  112 (115)
                      ....|.|.+++.+|+|.|.|.+.|..+.  ....+.|.
T Consensus        77 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~  114 (115)
T cd05880          77 RDASILIWQLQPTDNGTYTCQVKNPPDVHGPIGEIRLR  114 (115)
T ss_pred             CceEEEEeeCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence            4567999999999999999999987764  22355454

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.67  E-value=0.00015  Score=39.46  Aligned_cols=25  Identities=28%  Similarity=0.503  Sum_probs=22.0

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecC
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      ....|.|.+++.+|+|.|.|.+...
T Consensus        70 ~~~~L~I~~~~~~Dsg~Y~Ca~~~~   94 (110)
T cd05899          70 TRSSLTIKSAEPEDSAVYLCASSLG   94 (110)
T ss_pred             CccEEEECCCChhhCEEEEEEeeCC
Confidence            4578999999999999999998753

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.67  E-value=0.00025  Score=38.95  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=26.2

Q ss_pred             CCEEEEEeC--CeEEEEEecCCCCCCeEEEEEeec
Q psy3272          19 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        19 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      .++.+....  ....|+|.+++.+|+|.|.|.+..
T Consensus        64 ~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          64 NKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWE   98 (116)
T ss_pred             CCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence            455554444  567899999999999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=97.65  E-value=0.00077  Score=34.65  Aligned_cols=32  Identities=22%  Similarity=0.259  Sum_probs=23.1

Q ss_pred             EEEEeccCCCCCeeeEEEeecCccc--eeeEEEE
Q psy3272          80 TLTIKNVQSTDFGNYSCVADNNLGR--AKKYMEL  111 (115)
Q Consensus        80 ~l~i~~~~~~d~G~y~C~~~n~~~~--~~~~~~l  111 (115)
                      .|.|......|.|.|+|.|.|....  .+.++.|
T Consensus        47 ~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l   80 (82)
T cd05759          47 TLPITPSDHDTGRTFTCRARNEALPTGKETSVTL   80 (82)
T ss_pred             EEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence            5667776677888999999998765  3334444

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=97.64  E-value=0.00021  Score=38.38  Aligned_cols=24  Identities=25%  Similarity=0.472  Sum_probs=21.9

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeec
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ....|+|.+++.+|+|.|.|.+.+
T Consensus        62 ~~~sL~I~nv~~sD~GtY~C~v~~   85 (100)
T cd05888          62 ADGALILRNAVQADEGKYKCRVIT   85 (100)
T ss_pred             CceEEEEecCccccceEEEEEEEe
Confidence            467899999999999999999986

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.63  E-value=0.00012  Score=38.92  Aligned_cols=46  Identities=13%  Similarity=0.183  Sum_probs=29.9

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .+.|||+|.....  ..............+.|..++.+|+|.|.|...
T Consensus        30 ~f~l~k~g~~~~~--~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711          30 RFILYKEGRSKPV--LHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             EEEEEECCCCCCc--eecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            4689998864332  100000012235678999999999999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.62  E-value=0.00026  Score=37.81  Aligned_cols=35  Identities=26%  Similarity=0.454  Sum_probs=28.4

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeec-CccceeeEEEE
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADN-NLGRAKKYMEL  111 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n-~~~~~~~~~~l  111 (115)
                      ....|.|.+++.+|.|.|+|.... +.|+.++.+.+
T Consensus        58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~   93 (96)
T cd05889          58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV   93 (96)
T ss_pred             CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence            457899999999999999999975 46776666554

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd00098 IgC Immunoglobulin Constant domain

Probab=97.58  E-value=0.00016  Score=38.13  Aligned_cols=51  Identities=12%  Similarity=0.149  Sum_probs=31.5

Q ss_pred             cceEEEECCEEeCCCCCCC-EEEEEeC-----CeEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272           2 GMMSWYQDTFLIEPSVSDR-RLMETRG-----NKHTLTIKNVQSTDFGNYSCVADNNLG   54 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~-~~~~~~~-----~~~~l~i~~~~~~d~G~y~C~~~~~~~   54 (115)
                      +.|+|+++|..+..  ... .......     ..+.|.+......+.+.|.|.+.+...
T Consensus        30 ~~i~W~~~g~~~~~--~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          30 ITVTWLKNGKELTS--GVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             cEEEEEECCEECCC--ceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            36899999998765  221 1111111     124456655555689999999987553

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.58  E-value=0.00053  Score=37.02  Aligned_cols=46  Identities=28%  Similarity=0.361  Sum_probs=33.0

Q ss_pred             CcEEEEEe--CCeEEEEEeccCCCCCeeeEEEeecCc-cceeeEEEEEE
Q psy3272          68 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNL-GRAKKYMELSE  113 (115)
Q Consensus        68 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n~~-~~~~~~~~l~v  113 (115)
                      .+..+..+  .....|.|.+++.+|+|.|.|.+.... ......+.|.|
T Consensus        66 ~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   66 GRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             TTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             eeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            34444444  347899999999999999999999873 33444555554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=97.54  E-value=0.00011  Score=36.61  Aligned_cols=23  Identities=52%  Similarity=0.891  Sum_probs=21.1

Q ss_pred             eEEEEEeccCCCCCeeeEEEeec
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      ...|.|.++..+|.|.|+|.|.|
T Consensus        53 ~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   53 NSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEESSCCGGGTEEEEEEEEE
T ss_pred             eeEEEEccCCHHhCcEEEEEEEC
Confidence            45899999999999999999987

...

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=97.53  E-value=0.0004  Score=37.55  Aligned_cols=32  Identities=31%  Similarity=0.367  Sum_probs=24.7

Q ss_pred             CEEEEEeCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          20 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        20 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ++..........|.|.+++++|+|.|.|.+.+
T Consensus        61 r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~   92 (106)
T cd04980          61 RFSGSGSGTDFTLTISRVEPEDAAVYYCQQYG   92 (106)
T ss_pred             CEEEeccCCEEEEEECCCChHHCEEEEEEEeC
Confidence            44443334556799999999999999999864

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=97.51  E-value=0.00026  Score=37.98  Aligned_cols=27  Identities=33%  Similarity=0.471  Sum_probs=24.5

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCcc
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNLG  103 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~  103 (115)
                      ....|.|.+++.+|+|.|.|.+.+..+
T Consensus        65 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~   91 (105)
T cd00099          65 SSFTLTISSLQPEDSAVYYCAVSLSGG   91 (105)
T ss_pred             CEEEEEECCCCHHHCEEEEEEEecCCC
Confidence            567899999999999999999998774

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.44  E-value=0.00097  Score=34.59  Aligned_cols=50  Identities=18%  Similarity=0.193  Sum_probs=29.1

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEe-----CCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETR-----GNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      +.|+|+|+|..+..  .........     ...+.|.+.....++...|+|++.+..
T Consensus        15 ~~itW~kng~~l~~--~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~   69 (83)
T cd05884          15 ADIRWFKNDKEIKD--VKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES   69 (83)
T ss_pred             CEEEEEECCEECcC--ceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence            46899999998754  221111111     123456665444445569999998654

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=97.40  E-value=0.00033  Score=38.62  Aligned_cols=27  Identities=30%  Similarity=0.506  Sum_probs=23.5

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNLG   54 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~   54 (115)
                      ....|.|.+++.+|+|.|.|.+.+...
T Consensus        77 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          77 RDASILIWQLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             CceEEEEeeCChhhCEEEEEEEEeCCC
Confidence            457899999999999999999987554

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=97.36  E-value=0.0009  Score=36.20  Aligned_cols=26  Identities=23%  Similarity=0.327  Sum_probs=23.7

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      ....|.|.+++.+|+|.|.|.+.+..
T Consensus        68 ~~~~L~I~~~~~~DsG~Y~C~~~~~~   93 (109)
T cd04983          68 KSSSLHISAAQLSDSAVYFCALSESG   93 (109)
T ss_pred             CEEEEEECCCCHHHCEEEEEEEecCC
Confidence            57789999999999999999999764

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.31  E-value=0.00075  Score=35.93  Aligned_cols=33  Identities=30%  Similarity=0.403  Sum_probs=26.5

Q ss_pred             cEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          69 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        69 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ++....++....|.|.++..+|+|.|.|.+.+.
T Consensus        53 rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~   85 (98)
T cd04984          53 RFSGSKSGNTASLTISGAQTEDEADYYCQVWDS   85 (98)
T ss_pred             CEEEEccCCEEEEEECCCChhhCEEEEEEEccC
Confidence            444444556778999999999999999999864

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.27  E-value=0.0028  Score=33.66  Aligned_cols=27  Identities=22%  Similarity=0.393  Sum_probs=22.8

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .....|+|.+++.+|+|.|.|.+....
T Consensus        61 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~   87 (98)
T cd05716          61 NGVFTVTLNQLRKEDAGWYWCGVGDDG   87 (98)
T ss_pred             CCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence            345789999999999999999987543

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.23  E-value=0.00076  Score=37.12  Aligned_cols=26  Identities=35%  Similarity=0.571  Sum_probs=22.8

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNLG   54 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~~   54 (115)
                      ...|+|.+++.+|+|.|.|.+.+...
T Consensus        79 ~~sL~I~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          79 DASIVIHNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             eeEEEEeeCCcccCEEEEEEEEeCCC
Confidence            47899999999999999999986543

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>smart00406 IGv Immunoglobulin V-Type

Probab=97.22  E-value=0.00058  Score=34.62  Aligned_cols=23  Identities=39%  Similarity=0.674  Sum_probs=20.3

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEe
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVA   49 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~   49 (115)
                      .....|+|.+++.+|+|.|.|.+
T Consensus        59 ~~~~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406       59 KNDVSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             CCEEEEEEcCCCHHHCEEEEEcC
Confidence            45678999999999999999974

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.21  E-value=0.0021  Score=33.62  Aligned_cols=48  Identities=17%  Similarity=0.297  Sum_probs=32.2

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|+|...+...-.        .....+.+|.+..+...|+|.++|.+.........
T Consensus        32 ~i~w~~P~n~~~~--------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~   79 (88)
T cd07694          32 KVEWRGPGNKSKQ--------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTL   79 (88)
T ss_pred             cEEEeCCCCccce--------eccCCccEEEeceeCcccCCEEEEEEEECceEEEE
Confidence            7888764432111        01135678889999999999999999865444433

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=97.18  E-value=0.00077  Score=36.44  Aligned_cols=33  Identities=30%  Similarity=0.361  Sum_probs=26.2

Q ss_pred             cEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          69 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        69 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ++.....+....|.|.++..+|+|.|.|.+.+.
T Consensus        61 r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          61 RFSGSGSGTDFTLTISRVEPEDAAVYYCQQYGT   93 (106)
T ss_pred             CEEEeccCCEEEEEECCCChHHCEEEEEEEeCC
Confidence            444444456678999999999999999999764

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.16  E-value=0.0016  Score=35.07  Aligned_cols=50  Identities=20%  Similarity=0.286  Sum_probs=29.3

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCe-EEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFG-NYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~   53 (115)
                      +|+|||++..+.................+|++. +..+|.| .|+|++.+..
T Consensus        35 ~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l   85 (100)
T cd05755          35 TVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDL   85 (100)
T ss_pred             EEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEecc
Confidence            379999999886521110000011234566664 4466666 9999998654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=97.15  E-value=0.00094  Score=41.63  Aligned_cols=47  Identities=17%  Similarity=0.231  Sum_probs=34.7

Q ss_pred             cceEEEEC-CEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           2 GMMSWYQD-TFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      |...|..+ |+.+..  .....++   ....|.+.+-..+++|.|+|.+....
T Consensus        13 P~y~W~GP~g~~l~g--n~~~nIT---~TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   13 PTYLWTGPNGKPLSG--NSYVNIT---ETGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CceEEECCCCcccCC--CCeEEEc---cCceEEeeccccccCCceEEEEEEEe
Confidence            78999975 455555  4444443   45569999999999999999997543

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>KOG3515|consensus

Probab=97.15  E-value=0.0013  Score=46.62  Aligned_cols=93  Identities=19%  Similarity=0.240  Sum_probs=54.9

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v----------------   62 (115)
                      +++.||+.++.+..    +..   ......|.......+.-+.|.|++.+..+....   .+.+                
T Consensus        38 ~~~eW~h~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~~~~  110 (741)
T KOG3515|consen   38 IDVEWYHSTSGEHG----RYA---TIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACLPELGEIFQV  110 (741)
T ss_pred             cceEEEecCccccc----ccc---cccCCceeeecchhhhhhhhhhhhcccccCceecceeeccccCccccccccchhhh
Confidence            57899998875541    100   012344444455455556777777765433332   1222                


Q ss_pred             -------------ecccCCcEEEEEeC-----------------------CeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          63 -------------SVSVSDRRLMETRG-----------------------NKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        63 -------------~g~~~~~~~~~~~~-----------------------~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                                   .+.|.+.+.|....                       ....+.+...+..+.|+|+|.+.|.
T Consensus       111 ~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr  185 (741)
T KOG3515|consen  111 DKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNR  185 (741)
T ss_pred             cCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccc
Confidence                         34666666665421                       1235777777888999999999995

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.15  E-value=0.00095  Score=36.32  Aligned_cols=35  Identities=26%  Similarity=0.346  Sum_probs=26.7

Q ss_pred             CcEEEEEeC-CeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          68 DRRLMETRG-NKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        68 ~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      +++...... ....|.|.++..+|+|.|.|.+.+..
T Consensus        60 ~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          60 DRFSASRPSLTRSSLTIKSAEPEDSAVYLCASSLGG   95 (110)
T ss_pred             CceEEECcCCCccEEEECCCChhhCEEEEEEeeCCC
Confidence            344433332 56789999999999999999998754

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>PHA03376 BARF1; Provisional

Probab=97.14  E-value=0.0034  Score=37.58  Aligned_cols=32  Identities=19%  Similarity=0.259  Sum_probs=26.4

Q ss_pred             EEeCCeEEEEEeccCCCCCeeeEEEeecCccc
Q psy3272          73 ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR  104 (115)
Q Consensus        73 ~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~  104 (115)
                      ..+.+..+|.|.+++..|.|+|+|..+.....
T Consensus        81 ~~~~gnvsLvI~~l~lSDdGtY~C~fQkge~~  112 (221)
T PHA03376         81 HRSANTFFLVVTAANISHDGNYLCRMKLGETE  112 (221)
T ss_pred             EecCCeEEEEEEeeeecCCceEEEEEEcCCCc
Confidence            34456778999999999999999999976544

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.13  E-value=0.0015  Score=32.43  Aligned_cols=37  Identities=19%  Similarity=0.326  Sum_probs=25.1

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      +|.|++ |..+..  .         ...+|.+-....+-.|.|.|.+.+
T Consensus        18 si~W~k-G~~~~~--~---------~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691          18 NITWKK-GKEILE--V---------SNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             cEEEec-Cccccc--c---------cccEEeccCcccCCCcceEecCcc
Confidence            589999 554443  1         145565666666667999999866

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.12  E-value=0.0018  Score=35.52  Aligned_cols=34  Identities=24%  Similarity=0.316  Sum_probs=26.3

Q ss_pred             CCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          18 SDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        18 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      .+|+.+..  ......|+|.++..+|+|.|.|.+..
T Consensus        58 ~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~   93 (116)
T cd07706          58 KGRYSVNFQKAQKSISLTISALQLEDSAKYFCALST   93 (116)
T ss_pred             CCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEEC
Confidence            35555542  34567899999999999999999874

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.09  E-value=0.0033  Score=33.81  Aligned_cols=25  Identities=44%  Similarity=0.745  Sum_probs=22.6

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecC
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      ....|.|.+++.+|+|.|.|.+...
T Consensus        77 ~~~sL~i~~l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   77 NNFSLTIKNLQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             TEEEEEESSESGGGEEEEEEEEEES
T ss_pred             CeEEEEECCCCcCcCEEEEEEEEEC
Confidence            4678999999999999999999865

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.09  E-value=0.0049  Score=31.19  Aligned_cols=50  Identities=14%  Similarity=0.224  Sum_probs=27.5

Q ss_pred             ceEEEECCEEeCCC-CCCCEEEE---EeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           3 MMSWYQDTFLIEPS-VSDRRLME---TRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         3 ~v~W~~~~~~~~~~-~~~~~~~~---~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      .|+|+|+|+++... ........   .....+.|.+.....++...|+|.+...
T Consensus        17 ~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~   70 (75)
T smart00407       17 TVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE   70 (75)
T ss_pred             EEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence            68999999874321 00000010   0111344555555556667999999754

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.05  E-value=0.0013  Score=34.90  Aligned_cols=28  Identities=21%  Similarity=0.380  Sum_probs=24.2

Q ss_pred             CCeEEEEEeccCCCCCeeeEEEeecCcc
Q psy3272          76 GNKHTLTIKNVQSTDFGNYSCVADNNLG  103 (115)
Q Consensus        76 ~~~~~l~i~~~~~~d~G~y~C~~~n~~~  103 (115)
                      .....|.|.++..+|+|.|.|.+.....
T Consensus        61 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~~   88 (98)
T cd05716          61 NGVFTVTLNQLRKEDAGWYWCGVGDDGD   88 (98)
T ss_pred             CCEEEEEEcCCCHHHCEEEEEEcccCCC
Confidence            4567899999999999999999987653

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.04  E-value=0.0011  Score=33.63  Aligned_cols=23  Identities=39%  Similarity=0.674  Sum_probs=20.3

Q ss_pred             CCeEEEEEeccCCCCCeeeEEEe
Q psy3272          76 GNKHTLTIKNVQSTDFGNYSCVA   98 (115)
Q Consensus        76 ~~~~~l~i~~~~~~d~G~y~C~~   98 (115)
                      .....|.|.+++.+|+|.|.|.+
T Consensus        59 ~~~~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406       59 KNDVSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             CCEEEEEEcCCCHHHCEEEEEcC
Confidence            45678999999999999999963

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=97.04  E-value=0.0021  Score=33.51  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=24.4

Q ss_pred             EEEeccCCCCCeeeEEEeecCc-cceeeEEEEEEe
Q psy3272          81 LTIKNVQSTDFGNYSCVADNNL-GRAKKYMELSEL  114 (115)
Q Consensus        81 l~i~~~~~~d~G~y~C~~~n~~-~~~~~~~~l~v~  114 (115)
                      |.|..++.+|+|.|.|.+.-.. -..-..+.|.|.
T Consensus        49 LlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l~v~   83 (85)
T cd05872          49 LLILVTSPEHSGTYRCYSEEEGFQQLVASYSLNVV   83 (85)
T ss_pred             CEEEECCHhhCEEEEEEEecCCCeEEEEEEEEEEe
Confidence            7899999999999999988432 233345555543

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.01  E-value=0.0015  Score=35.32  Aligned_cols=33  Identities=30%  Similarity=0.397  Sum_probs=26.4

Q ss_pred             CcEEEEEeCCeEEEEEeccCCCCCeeeEEEeec
Q psy3272          68 DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        68 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      .++..........|.|.++..+|+|.|.|.+.+
T Consensus        58 ~rf~~~~~~~~~~L~I~~~~~sDsgtY~Ca~~~   90 (104)
T cd05720          58 KRFSGSRSSNSFVLTLKNFQKENEGYYFCSVAS   90 (104)
T ss_pred             ceEEEEecCCEEEEEECCCCHHHCEEEEEEEcc
Confidence            345444555677899999999999999999874

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=96.93  E-value=0.022  Score=31.18  Aligned_cols=34  Identities=24%  Similarity=0.320  Sum_probs=27.1

Q ss_pred             CcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          68 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        68 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .++....+.  ....|.|.++..+|+|.|.|.+...
T Consensus        64 ~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~   99 (116)
T cd04982          64 NKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWES   99 (116)
T ss_pred             CCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEecC
Confidence            455555554  5678999999999999999999753

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=96.88  E-value=0.0024  Score=35.29  Aligned_cols=26  Identities=23%  Similarity=0.298  Sum_probs=22.2

Q ss_pred             eCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          26 RGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        26 ~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ......|.|.+++.+|+|.|.|.+..
T Consensus        76 ~~~~~sL~I~~l~~~Dsg~Y~C~~~~  101 (119)
T cd05712          76 GKKNCSLLISDAQPEDSGKYFFRVEL  101 (119)
T ss_pred             CCCEEEEEEccCChhhCeEEEEEEEc
Confidence            34467899999999999999999864

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=96.84  E-value=0.0044  Score=36.91  Aligned_cols=42  Identities=29%  Similarity=0.338  Sum_probs=32.6

Q ss_pred             EEeCCeEEEEEeccCCCCCeeeEEEeec-Ccc-ceeeEEEEEEe
Q psy3272          73 ETRGNKHTLTIKNVQSTDFGNYSCVADN-NLG-RAKKYMELSEL  114 (115)
Q Consensus        73 ~~~~~~~~l~i~~~~~~d~G~y~C~~~n-~~~-~~~~~~~l~v~  114 (115)
                      ...-....|.|.+++.+|+|.|.|...- +.| +.+.++.|.|.
T Consensus        79 S~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt  122 (189)
T PHA02987         79 SKSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVT  122 (189)
T ss_pred             ccCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEE
Confidence            3344567899999999999999999874 445 66777777774

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=96.75  E-value=0.0043  Score=30.60  Aligned_cols=36  Identities=25%  Similarity=0.413  Sum_probs=23.7

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      .|.|++++..++.  .          +..+.+.+-. ++.|.|.|.+..
T Consensus        20 ~i~W~~n~~~~~g--~----------~~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692          20 DIKWKKNDQVSQG--S----------DEKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             CceEEeCCccCCC--C----------CceEEeeccC-CCCceEEEEeCC
Confidence            4899999866654  1          1223333333 789999999864

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=96.70  E-value=0.0033  Score=34.49  Aligned_cols=34  Identities=24%  Similarity=0.286  Sum_probs=26.8

Q ss_pred             CcEEEEE--eCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          68 DRRLMET--RGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        68 ~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .++.+..  ......|.|.++..+|+|.|.|.+...
T Consensus        59 ~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~   94 (116)
T cd07706          59 GRYSVNFQKAQKSISLTISALQLEDSAKYFCALSTL   94 (116)
T ss_pred             CeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEECC
Confidence            4555543  345788999999999999999999953

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PHA02633 hypothetical protein; Provisional

Probab=96.64  E-value=0.0084  Score=29.20  Aligned_cols=26  Identities=31%  Similarity=0.526  Sum_probs=21.3

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .+..|-|-++..+|+|.|.|.+++..
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t   41 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNET   41 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCC
Confidence            45567778889999999999998654

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=96.62  E-value=0.0044  Score=33.46  Aligned_cols=30  Identities=30%  Similarity=0.369  Sum_probs=23.9

Q ss_pred             EEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          21 RLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        21 ~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      +..........|+|.+++.+|+|.|.|.+.
T Consensus        60 f~~~~~~~~~~L~I~~~~~sDsgtY~Ca~~   89 (104)
T cd05720          60 FSGSRSSNSFVLTLKNFQKENEGYYFCSVA   89 (104)
T ss_pred             EEEEecCCEEEEEECCCCHHHCEEEEEEEc
Confidence            444334466789999999999999999975

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=96.55  E-value=0.017  Score=30.64  Aligned_cols=47  Identities=13%  Similarity=0.198  Sum_probs=25.4

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEE---ecCCCCCCeEEEEEeecC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTI---KNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i---~~~~~~d~G~y~C~~~~~   52 (115)
                      .|+|.|||.++..........   ..+.+..+   -.+.+.+...|.|.+...
T Consensus        33 ~v~W~~dg~~~~~~~~~~~~p---~~d~tyq~~s~l~~~~~~~~~ysC~V~H~   82 (93)
T cd05770          33 EIRLLKNGVKIPKVEQSDLSF---SKDWTFYLLKSTEFTPTKGDEYACRVRHN   82 (93)
T ss_pred             EEEEEECCEECCCcEECcEEE---CCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence            679999999875311111111   11112111   123456677899999764

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=96.53  E-value=0.022  Score=31.29  Aligned_cols=48  Identities=10%  Similarity=0.261  Sum_probs=26.5

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeC-----CeEEEEEecCCCCCCe-EEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRG-----NKHTLTIKNVQSTDFG-NYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G-~y~C~~~~~~   53 (115)
                      .|+|+|||..+..  ...-......     ..+.|.+.. ...|.| .|+|.+....
T Consensus        39 ~v~W~kng~~~~~--~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          39 TVKWLKNGNELSA--EQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             EEEEEECCEECcc--cccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence            6899999998764  2111111111     123444443 344545 5999998643

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=96.48  E-value=0.01  Score=32.78  Aligned_cols=33  Identities=15%  Similarity=0.240  Sum_probs=24.3

Q ss_pred             CCEEEEEeC--CeEEEEEecCCCCCCeEEEEEeec
Q psy3272          19 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        19 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      +++......  ....|+|.++..+|+|.|.|....
T Consensus        63 ~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          63 GRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGL   97 (117)
T ss_pred             CcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence            445544332  345799999999999999998753

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=96.44  E-value=0.0053  Score=33.28  Aligned_cols=26  Identities=27%  Similarity=0.535  Sum_probs=22.3

Q ss_pred             CCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          76 GNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        76 ~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      +....|.|.++..+|+|.|.|...+.
T Consensus        69 ~~~~~L~I~~~~~~Dsg~YyCa~~~~   94 (107)
T cd07700          69 SSRYRLHINRVKPEDSGTYFCMTVGS   94 (107)
T ss_pred             CCEEEEEECCCCHHHCEEEEEeEcCC
Confidence            45678999999999999999998643

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=96.34  E-value=0.038  Score=28.99  Aligned_cols=37  Identities=22%  Similarity=0.446  Sum_probs=29.5

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ...|.+.+++..|+|.-+|.+....-.....+.+.|+
T Consensus        50 ~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~Vl   86 (88)
T cd07694          50 KKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKVL   86 (88)
T ss_pred             ccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEEE
Confidence            4579999999999999999998665555666666664

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd00096 Ig Immunoglobulin domain

Probab=96.12  E-value=0.018  Score=27.30  Aligned_cols=26  Identities=54%  Similarity=0.823  Sum_probs=22.6

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCcc
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLG  103 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~  103 (115)
                      ...|.|.++...|.|.|.|.+.+..+
T Consensus        42 ~~~l~i~~~~~~d~g~y~C~~~~~~~   67 (74)
T cd00096          42 SSTLTISNVTLEDSGTYTCVASNSAG   67 (74)
T ss_pred             EEEEEECccCcccCcEEEEEEecCcC
Confidence            45799999999999999999998763

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=96.09  E-value=0.015  Score=32.09  Aligned_cols=33  Identities=21%  Similarity=0.221  Sum_probs=25.4

Q ss_pred             cEEEEE--eCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          69 RRLMET--RGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        69 ~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ++.+..  ......|.|.++..+|+|.|.|.+...
T Consensus        68 R~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          68 RFRLLGDLGKKNCSLLISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             cEEEecCCCCCEEEEEEccCChhhCeEEEEEEEcC
Confidence            444432  345678999999999999999998664

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.07  E-value=0.077  Score=27.48  Aligned_cols=52  Identities=17%  Similarity=0.210  Sum_probs=28.9

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeC-----CeEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRG-----NKHTLTIKNVQSTDFGNYSCVADNNLG   54 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~y~C~~~~~~~   54 (115)
                      .|.|+|+.++..+..  ..........     ..+.|.+..-..++...+.|.+.+...
T Consensus        29 ~~~i~W~~~~~~~~~--~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~   85 (89)
T PF08205_consen   29 PPQITWYLDGGPVVA--SNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL   85 (89)
T ss_dssp             -EEEEEEETTCEECE--EEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred             CeEEEEEECCCceee--eeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence            368999999877621  0000000000     134566654444456689999987653

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=96.01  E-value=0.018  Score=30.53  Aligned_cols=22  Identities=18%  Similarity=0.511  Sum_probs=19.7

Q ss_pred             eEEEEEeccCCCCCeeeEEEee
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVAD   99 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~   99 (115)
                      ...+.|..++.+|+|.|.|...
T Consensus        54 ~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711          54 QASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             EEEEEecCCCcccCEEEEEEEE
Confidence            4578999999999999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=95.88  E-value=0.055  Score=28.74  Aligned_cols=45  Identities=11%  Similarity=0.203  Sum_probs=24.5

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeC------CeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRG------NKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      .|+|.+||.++..  +.........      ..+.|.+.   +.+...|+|.+...
T Consensus        33 ~v~W~~~g~~~~~--~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~   83 (94)
T cd05767          33 NVTWLKNGVPVTD--GVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW   83 (94)
T ss_pred             EEEEEECCeEccC--ceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence            5799999988754  2111000001      12334443   34556899999764

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=95.81  E-value=0.044  Score=29.10  Aligned_cols=51  Identities=14%  Similarity=0.183  Sum_probs=26.1

Q ss_pred             ceEEEECCEEeCCC-CCCCEEEEEe---CCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPS-VSDRRLMETR---GNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~-~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|+++|..+... ..........   ...+.|.+......+...|.|.+....
T Consensus        32 ~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~   86 (94)
T cd05847          32 EVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG   86 (94)
T ss_pred             EEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence            67999999876331 0111111100   112344444333334569999998644

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=95.80  E-value=0.059  Score=28.38  Aligned_cols=48  Identities=23%  Similarity=0.266  Sum_probs=24.4

Q ss_pred             ceEEEECCEEeCCC-CCCCEEEEEeC---CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPS-VSDRRLMETRG---NKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~-~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|+++|..+... ...........   ..+.|.+   ...+.+.|+|.+....
T Consensus        32 ~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v---~~~~~~~ytC~V~H~~   83 (93)
T cd07698          32 EVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEV---PPEDKARYSCRVEHSG   83 (93)
T ss_pred             EEEEEECCEECcccccccceEECCCCeEEEEEEEEE---CCCCCCEEEEEEEeCC
Confidence            68999999643221 01111111000   1223333   3347789999997644

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=95.69  E-value=0.093  Score=27.82  Aligned_cols=48  Identities=15%  Similarity=0.260  Sum_probs=24.9

Q ss_pred             ceEEEECCEEeCCC-CCCCEEEEEe---CCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPS-VSDRRLMETR---GNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~-~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|++||..+... .......+..   ...+.|.+   ...+...|.|.+....
T Consensus        32 ~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~~   83 (94)
T cd05766          32 TVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHSS   83 (94)
T ss_pred             EEEEEECCeecCCCceecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeCC
Confidence            67999999987651 0011111100   01233333   3345568999997643

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=95.57  E-value=0.038  Score=29.63  Aligned_cols=51  Identities=14%  Similarity=0.232  Sum_probs=26.8

Q ss_pred             ceEEEECCEEeCCCCC-CCEEEEEe---CCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVS-DRRLMETR---GNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~-~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|++||+.+..... ........   ...+.|.+......+...|+|.+....
T Consensus        35 ~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          35 TVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             EEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence            6899999998753100 01010000   112344444433334569999997643

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=95.56  E-value=0.023  Score=30.75  Aligned_cols=23  Identities=30%  Similarity=0.580  Sum_probs=20.3

Q ss_pred             CeEEEEEecCCCCCCeEEEEEee
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ....|+|.++.++|+|.|.|...
T Consensus        70 ~~~~L~I~~~~~~Dsg~YyCa~~   92 (107)
T cd07700          70 SRYRLHINRVKPEDSGTYFCMTV   92 (107)
T ss_pred             CEEEEEECCCCHHHCEEEEEeEc
Confidence            34679999999999999999975

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=95.50  E-value=0.1  Score=29.57  Aligned_cols=24  Identities=17%  Similarity=0.249  Sum_probs=15.7

Q ss_pred             EEEEEecCCCCCCeEEEEEeecCC
Q psy3272          30 HTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus        30 ~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      +.|.+......+.+.|.|.+.+..
T Consensus       108 s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771         108 SHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             EEEEecCCccCCCCEEEEEEEcCC
Confidence            556665444445569999997643

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=95.43  E-value=0.065  Score=29.10  Aligned_cols=34  Identities=26%  Similarity=0.302  Sum_probs=26.4

Q ss_pred             EeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272          25 TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus        25 ~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .......|.|+.+++.|+|.|.-++.+..|....
T Consensus        66 F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~   99 (108)
T PF11465_consen   66 FTSENLALLIKAAQPQDSGLYCLEVTNESGKVCT   99 (108)
T ss_dssp             EETTTTEEEESS-SGGG-EEEEEEEEETTSCEEE
T ss_pred             eeccCceEEEeecCcccCceEEEEEEcCCCcEEE
Confidence            3456778999999999999999999987777654

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=95.34  E-value=0.046  Score=30.86  Aligned_cols=33  Identities=21%  Similarity=0.416  Sum_probs=20.6

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL   62 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v   62 (115)
                      ..+|.+.....- .|.|+|.+.....+....+.+
T Consensus        85 ~aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~L  117 (130)
T PF08204_consen   85 NASLKMDKSDAV-EGNYTCEVTELSREGETTIEL  117 (130)
T ss_dssp             B--EEEEHHHHH--EEEEEEEEETTEEEEEEEEE
T ss_pred             CEEEEEcchhcc-ccceEEEEEecCCCceEEEEE
Confidence            455777764433 799999998777666654444

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=95.33  E-value=0.19  Score=26.73  Aligned_cols=23  Identities=13%  Similarity=0.287  Sum_probs=15.1

Q ss_pred             EEEEEecCCCCCCe-EEEEEeecCC
Q psy3272          30 HTLTIKNVQSTDFG-NYSCVADNNL   53 (115)
Q Consensus        30 ~~l~i~~~~~~d~G-~y~C~~~~~~   53 (115)
                      +.|.+.. ..+|.| .|.|++.+..
T Consensus        59 S~l~~~p-~~~d~G~~~tC~v~h~~   82 (95)
T cd05719          59 SEYRLVP-SREANGKELTCVVSHPT   82 (95)
T ss_pred             EEEEEec-CHHHCCCEEEEEEeCcc
Confidence            4555544 445555 8999998754

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=95.30  E-value=0.17  Score=25.94  Aligned_cols=46  Identities=13%  Similarity=0.265  Sum_probs=26.7

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEE-eCC-----eEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMET-RGN-----KHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~-~~~-----~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|+++|..+..  ........ ..+     .+.|.+.   ..+...|.|.+....
T Consensus        26 ~v~W~~~~~~~~~--~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~   77 (83)
T PF07654_consen   26 TVTWLKNGKEVTE--GVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES   77 (83)
T ss_dssp             EEEEEETTEEETT--TEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred             EEEEEeccceeee--eeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence            6899999998764  22211111 111     2344444   455568999997644

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=95.29  E-value=0.087  Score=28.13  Aligned_cols=13  Identities=8%  Similarity=0.084  Sum_probs=10.5

Q ss_pred             ceEEEECCEEeCC
Q psy3272           3 MMSWYQDTFLIEP   15 (115)
Q Consensus         3 ~v~W~~~~~~~~~   15 (115)
                      .|+|.+||..+..
T Consensus        34 ~v~W~kng~~~~~   46 (96)
T cd07697          34 QVHWREGNSPSIL   46 (96)
T ss_pred             EEEEEECCEECcC
Confidence            6799999987653

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>PHA02982 hypothetical protein; Provisional

Probab=95.24  E-value=0.073  Score=32.51  Aligned_cols=36  Identities=25%  Similarity=0.536  Sum_probs=29.8

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .+++.+......++|+|.++.++..|.|+|.+....
T Consensus        88 kd~y~~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~  123 (251)
T PHA02982         88 KDKYALSVSGNSSTFTMKKPDPQNLGCFTCEAKDAE  123 (251)
T ss_pred             ceeEEEEEeccceeEEeccCCcccCCceEEEEecCC
Confidence            344556677888999999999999999999998644

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=95.24  E-value=0.11  Score=26.66  Aligned_cols=24  Identities=17%  Similarity=0.158  Sum_probs=15.8

Q ss_pred             EEEeccCCCCCeeeEEEeecCccc
Q psy3272          81 LTIKNVQSTDFGNYSCVADNNLGR  104 (115)
Q Consensus        81 l~i~~~~~~d~G~y~C~~~n~~~~  104 (115)
                      |.+......+.+.|+|.+.+....
T Consensus        47 l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761          47 LRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEcchhhCCCEEEEEEeChhcC
Confidence            444333334456999999998765

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=95.04  E-value=0.13  Score=27.93  Aligned_cols=39  Identities=28%  Similarity=0.386  Sum_probs=29.4

Q ss_pred             CCeEEEEEeccCCCCCeeeEEEeecCccce-eeEEEEEEe
Q psy3272          76 GNKHTLTIKNVQSTDFGNYSCVADNNLGRA-KKYMELSEL  114 (115)
Q Consensus        76 ~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~-~~~~~l~v~  114 (115)
                      .....|.|..+.+.|+|.|.-.+.+..|.. ...+.+.|.
T Consensus        68 ~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   68 SENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             TTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             ccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            345689999999999999999999999984 335566554

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=95.02  E-value=0.22  Score=25.80  Aligned_cols=33  Identities=24%  Similarity=0.294  Sum_probs=20.3

Q ss_pred             EEEEeccCCCCCe-eeEEEeecCccc-eeeEEEEEE
Q psy3272          80 TLTIKNVQSTDFG-NYSCVADNNLGR-AKKYMELSE  113 (115)
Q Consensus        80 ~l~i~~~~~~d~G-~y~C~~~n~~~~-~~~~~~l~v  113 (115)
                      .|.|. +..+|.| .|+|.|.|+.-. .+....|.|
T Consensus        45 ~L~~~-p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V   79 (82)
T cd05883          45 QLMLK-VTKEDDGVPVICLVDHPAVKDLQTQRYLEV   79 (82)
T ss_pred             EEEEE-CchhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence            45553 4556665 999999997643 333444444

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=94.95  E-value=0.041  Score=34.61  Aligned_cols=25  Identities=28%  Similarity=0.449  Sum_probs=22.0

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      .+.|.+.++...++|.|+|...-..
T Consensus        36 TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   36 TGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CceEEeeccccccCCceEEEEEEEe
Confidence            3469999999999999999998765

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=94.69  E-value=0.36  Score=26.59  Aligned_cols=57  Identities=14%  Similarity=0.170  Sum_probs=36.0

Q ss_pred             EEEEEeecCCcceeEEE-EEe---------cccCCcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeec
Q psy3272          44 NYSCVADNNLGRAKKYM-ELS---------VSVSDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~~-~v~---------g~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      .+..++.+..+.....+ .+.         .....++....+.  ....|.|.++..+|+|.|.|.+..
T Consensus        29 ~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          29 YGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGL   97 (117)
T ss_pred             ceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence            45566776666555422 121         1112355554443  346799999999999999999875

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=94.61  E-value=0.14  Score=27.23  Aligned_cols=23  Identities=9%  Similarity=0.286  Sum_probs=15.0

Q ss_pred             EEEEEecCCCCCCe-EEEEEeecCC
Q psy3272          30 HTLTIKNVQSTDFG-NYSCVADNNL   53 (115)
Q Consensus        30 ~~l~i~~~~~~d~G-~y~C~~~~~~   53 (115)
                      +.|.+.. ..+|.| .|.|++.+..
T Consensus        59 S~l~~~P-~~~d~Gk~ltC~v~h~a   82 (95)
T cd07703          59 SEYSLVP-TPEANGKEVTCKVEHET   82 (95)
T ss_pred             EEEEEec-CHHHCCCEEEEEEeCcc
Confidence            4555543 445555 8999998754

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=94.60  E-value=0.15  Score=26.33  Aligned_cols=28  Identities=21%  Similarity=0.374  Sum_probs=19.5

Q ss_pred             EEEEecCCCCCCeEEEEEe-ecCCcceeE
Q psy3272          31 TLTIKNVQSTDFGNYSCVA-DNNLGRAKK   58 (115)
Q Consensus        31 ~l~i~~~~~~d~G~y~C~~-~~~~~~~~~   58 (115)
                      .+.......+|+|.+.|.+ .+......+
T Consensus        44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s   72 (80)
T PF05790_consen   44 LVSTFTPTTEDSGTWVCTASDNEPKERES   72 (80)
T ss_dssp             EEEEESBTCGGSEEEEEEEEECTTEEEEE
T ss_pred             EEEEecCCCCCCEEEEEEEcCCceEEEEE
Confidence            3455677789999999999 554443333

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=94.54  E-value=0.21  Score=24.95  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=19.4

Q ss_pred             eEEEEEeccCCCCCeeeEEEeec
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      ...|.|......-.|.|.|.+.+
T Consensus        32 ~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691          32 NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             ccEEeccCcccCCCcceEecCcc
Confidence            35688888888889999999988

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA03042 CD47-like protein; Provisional

Probab=94.31  E-value=0.26  Score=31.35  Aligned_cols=51  Identities=25%  Similarity=0.426  Sum_probs=32.8

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL   62 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v   62 (115)
                      .|.|..+++.+-.  .+.      ...++|.++... .-.|.|+|++.+..+.....+++
T Consensus        52 ~V~Wkf~~~~If~--~n~------tn~aSL~~~f~~-~l~GNYTCEv~~l~n~gk~~IeL  102 (286)
T PHA03042         52 HINWKFNNKVIFK--KNN------TNTSSLKFNFSK-NLSGNYTCEAINKFNKIKNTIEL  102 (286)
T ss_pred             EEEEEeCCeeEEE--ecC------CcceEEEEeccc-cCCCceeEEEeecccCccEEEEE
Confidence            4789998886643  221      134666665443 34799999998777666554544

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=94.21  E-value=0.16  Score=27.41  Aligned_cols=51  Identities=12%  Similarity=0.100  Sum_probs=25.5

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEE-------eCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMET-------RGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|+++|+++............       ....+.|.+..-...+...|+|.+....
T Consensus        34 ~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~   91 (102)
T cd05768          34 FVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA   91 (102)
T ss_pred             EEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence            57999999887531000000000       0112344443332234558999997643

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=94.11  E-value=0.4  Score=24.73  Aligned_cols=26  Identities=19%  Similarity=0.201  Sum_probs=17.1

Q ss_pred             EEEEeccCCCCCeeeEEEeecCccce
Q psy3272          80 TLTIKNVQSTDFGNYSCVADNNLGRA  105 (115)
Q Consensus        80 ~l~i~~~~~~d~G~y~C~~~n~~~~~  105 (115)
                      .|.+......+...++|.+.+.....
T Consensus        62 ~l~~~~~~~~~~~~~~C~~~~~~~~~   87 (89)
T PF08205_consen   62 TLTLTPTREDHGKTLTCRASHPALSQ   87 (89)
T ss_dssp             EEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred             EEEEEcChHHCCeEEEEEEECCccCC
Confidence            45555444345559999999987554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=93.95  E-value=0.8  Score=30.93  Aligned_cols=35  Identities=23%  Similarity=0.121  Sum_probs=26.9

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      ++|+|..++.+..|-|.|.+....-..++.-.|.|
T Consensus       346 STLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V  380 (500)
T PHA02914        346 STLTIKKAHINNAGCYEAQAFMGKFKEECRHCFKV  380 (500)
T ss_pred             ceEEeeeEEEEcCCceEEEEecCcchhhhhhheEe
Confidence            48999999999999999999887655555444443

>PHA02982 hypothetical protein; Provisional

Probab=93.88  E-value=0.74  Score=28.34  Aligned_cols=37  Identities=24%  Similarity=0.562  Sum_probs=31.2

Q ss_pred             cEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccce
Q psy3272          69 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA  105 (115)
Q Consensus        69 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~  105 (115)
                      .+...-++..++|+|.+++.+..|-|+|.+....+..
T Consensus        90 ~y~~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k~  126 (251)
T PHA02982         90 KYALSVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGKE  126 (251)
T ss_pred             eEEEEEeccceeEEeccCCcccCCceEEEEecCCCch
Confidence            4455667888999999999999999999999877553

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=93.83  E-value=0.46  Score=24.47  Aligned_cols=24  Identities=8%  Similarity=0.173  Sum_probs=16.2

Q ss_pred             EEEeccCCCCCeeeEEEeecCccc
Q psy3272          81 LTIKNVQSTDFGNYSCVADNNLGR  104 (115)
Q Consensus        81 l~i~~~~~~d~G~y~C~~~n~~~~  104 (115)
                      |.+......+...|+|.+.+....
T Consensus        48 l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705          48 VEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEecchhCCCEEEEEEECcccC
Confidence            444344444556999999998754

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>KOG3515|consensus

Probab=93.25  E-value=0.85  Score=33.25  Aligned_cols=57  Identities=21%  Similarity=0.306  Sum_probs=38.3

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM   60 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~   60 (115)
                      |.+.|.+++-.+..  ................+.++.+.|.|.|.|.+.+..+.....+
T Consensus       432 ~~~~w~~~~~~~~~--~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~  488 (741)
T KOG3515|consen  432 RTFYWTFRLYKLSQ--VDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYL  488 (741)
T ss_pred             cchhheecceeccc--ccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEE
Confidence            57789988877765  3332222223333444667889999999999999887776633

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=93.08  E-value=0.61  Score=25.79  Aligned_cols=51  Identities=10%  Similarity=0.201  Sum_probs=26.7

Q ss_pred             ceEEEECCEEeCCCCCC-CEEEEE----eCCeEEEEEecCCCCC-CeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSD-RRLMET----RGNKHTLTIKNVQSTD-FGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~-~~~~~~----~~~~~~l~i~~~~~~d-~G~y~C~~~~~~   53 (115)
                      .|+|+||+..+...... ......    ....+.|.+......+ ...|.|.+....
T Consensus        36 ~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g   92 (115)
T cd05769          36 SLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYG   92 (115)
T ss_pred             EEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeC
Confidence            68999999887641110 011110    1113445554433333 458999997643

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>KOG1480|consensus

Probab=92.80  E-value=0.045  Score=39.40  Aligned_cols=51  Identities=29%  Similarity=0.630  Sum_probs=37.5

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .++|+|++..+..  ...+   .....+.+.|..+...|.|.|+|++.+..+....
T Consensus       161 e~~w~k~e~~~~p--d~n~---~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~  211 (909)
T KOG1480|consen  161 EVEWLKNEVVIDP--DANV---IRASDHNLIISQARLSDSGNYTCEATNIVAKRKS  211 (909)
T ss_pred             hhhccccCCCCCc--cccc---hhhhcCCccccchhhhhcccceeeeehhhccccc
Confidence            4789999876655  2221   2234667889999999999999999987766655

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=92.64  E-value=0.31  Score=27.61  Aligned_cols=35  Identities=20%  Similarity=0.368  Sum_probs=24.5

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      ...|.+.....- .|+|+|.+.......+..+.|..
T Consensus        85 ~aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~  119 (130)
T PF08204_consen   85 NASLKMDKSDAV-EGNYTCEVTELSREGETTIELKY  119 (130)
T ss_dssp             B--EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE
T ss_pred             CEEEEEcchhcc-ccceEEEEEecCCCceEEEEEEE
Confidence            345777764444 79999999998888777777765

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=92.50  E-value=0.68  Score=24.61  Aligned_cols=42  Identities=14%  Similarity=0.154  Sum_probs=26.6

Q ss_pred             ecccCCcEEEEEe--CC---------------eEEEEEeccCCCCCe-eeEEEeecCccce
Q psy3272          63 SVSVSDRRLMETR--GN---------------KHTLTIKNVQSTDFG-NYSCVADNNLGRA  105 (115)
Q Consensus        63 ~g~~~~~~~~~~~--~~---------------~~~l~i~~~~~~d~G-~y~C~~~n~~~~~  105 (115)
                      .|+|.+.+.|..+  +.               .+.|.+ ....+|.| .|+|.+.+..-..
T Consensus        26 ~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~-~p~~~d~G~~~tC~v~h~~l~~   85 (95)
T cd05719          26 NGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRL-VPSREANGKELTCVVSHPTLQE   85 (95)
T ss_pred             CCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEE-ecCHHHCCCEEEEEEeCcccCC
Confidence            5677888888764  10               113444 33456666 9999999987553

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=91.67  E-value=0.41  Score=26.50  Aligned_cols=26  Identities=15%  Similarity=0.376  Sum_probs=22.3

Q ss_pred             EeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          25 TRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        25 ~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ...+...|.|.+++.+|++.|.|...
T Consensus        69 ~s~ntv~L~l~~L~a~DTa~Y~Ca~e   94 (115)
T cd05721          69 LGNEQVNFTLQNLRANQTDIYFCKIE   94 (115)
T ss_pred             CCCCEEEEEEcCCCHHHCeEEEEEee
Confidence            34567889999999999999999764

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=90.83  E-value=1.3  Score=22.77  Aligned_cols=25  Identities=24%  Similarity=0.167  Sum_probs=16.4

Q ss_pred             EEEEeccCCCCCeeeEEEeecCccc
Q psy3272          80 TLTIKNVQSTDFGNYSCVADNNLGR  104 (115)
Q Consensus        80 ~l~i~~~~~~d~G~y~C~~~n~~~~  104 (115)
                      .|.+..-...+...|+|.+.+....
T Consensus        47 ~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884          47 TLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEcccccCCCEEEEEEechhcC
Confidence            4555433344445999999998765

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=90.71  E-value=1.4  Score=23.44  Aligned_cols=48  Identities=10%  Similarity=0.225  Sum_probs=24.0

Q ss_pred             ceEEEECCEEeCCCCCCCE--EEEE-eC---CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRR--LMET-RG---NKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~--~~~~-~~---~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|+|||.. ..  +...  .... ..   ..+.|.+....-.....|.|.+....
T Consensus        34 ~vtW~k~g~~-~~--~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          34 TFTWNSGSNS-TS--GVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             EEEEeECCEE-CC--CcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            6899999987 32  1100  0000 00   12334443332222457999998654

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=90.28  E-value=1.7  Score=23.11  Aligned_cols=12  Identities=8%  Similarity=0.193  Sum_probs=8.9

Q ss_pred             CeEEEEEeecCC
Q psy3272          42 FGNYSCVADNNL   53 (115)
Q Consensus        42 ~G~y~C~~~~~~   53 (115)
                      .-.|+|.+....
T Consensus        75 g~~ysC~V~H~~   86 (96)
T cd07696          75 GDTFQCKVTHPD   86 (96)
T ss_pred             CCcEEEEEECCC
Confidence            448999998643

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=90.15  E-value=1.6  Score=22.51  Aligned_cols=35  Identities=23%  Similarity=0.364  Sum_probs=25.3

Q ss_pred             EEEEeccCCCCCeeeEEEe-ecCccceeeEEEEEEe
Q psy3272          80 TLTIKNVQSTDFGNYSCVA-DNNLGRAKKYMELSEL  114 (115)
Q Consensus        80 ~l~i~~~~~~d~G~y~C~~-~n~~~~~~~~~~l~v~  114 (115)
                      ....-.+..+|+|...|.| .+..-.....+.|.|.
T Consensus        44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v~   79 (80)
T PF05790_consen   44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILVL   79 (80)
T ss_dssp             EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEEE
T ss_pred             EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEcC
Confidence            4566677789999999999 6666555556666553

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=89.78  E-value=1.4  Score=23.47  Aligned_cols=45  Identities=7%  Similarity=0.071  Sum_probs=26.6

Q ss_pred             ecccCCcEEEEEeCC-----------------eEEEEEeccCCCCCe-eeEEEeecCccceeeE
Q psy3272          63 SVSVSDRRLMETRGN-----------------KHTLTIKNVQSTDFG-NYSCVADNNLGRAKKY  108 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~-----------------~~~l~i~~~~~~d~G-~y~C~~~n~~~~~~~~  108 (115)
                      .|.|.+.+.|+.+..                 .+.|.+. ...+|.| .|+|.+.+..-.....
T Consensus        26 ~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~-P~~~d~Gk~ltC~v~h~al~~~~~   88 (95)
T cd07703          26 NGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLV-PTPEANGKEVTCKVEHETLQEPQL   88 (95)
T ss_pred             CCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEe-cCHHHCCCEEEEEEeCcccCCCeE
Confidence            466777777765411                 1234442 3455666 9999999987554333

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=86.28  E-value=0.45  Score=25.52  Aligned_cols=48  Identities=8%  Similarity=0.133  Sum_probs=24.5

Q ss_pred             CcceEEEECCEEeCCC----CCC-CEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           1 MGMMSWYQDTFLIEPS----VSD-RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~----~~~-~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      ++.|.|+.+.......    ..+ .++     ..+.+.+......|--.+.|++....
T Consensus        32 aa~IsW~~~~~G~~~~~~~~~~ngT~T-----V~S~~~l~p~r~d~G~~vtC~V~H~a   84 (97)
T cd07704          32 AADVTWETNVYGTSESHSQEHPNGTTT-----VTSEYIWVPSRHANGHPLTCVVSHPA   84 (97)
T ss_pred             CCEeEEeCCCCCccceeeecCCCCCEE-----EEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence            3689999874322110    011 111     13445554443334448999998653

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=83.14  E-value=4  Score=22.03  Aligned_cols=47  Identities=13%  Similarity=0.145  Sum_probs=26.5

Q ss_pred             ceEEEECCEEeCCCCCCCEEE-E--E-eCCeEEEEEecCCCCCCe-EEEEEeecC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLM-E--T-RGNKHTLTIKNVQSTDFG-NYSCVADNN   52 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~-~--~-~~~~~~l~i~~~~~~d~G-~y~C~~~~~   52 (115)
                      .|.|+++...+..  ...... .  . ......+++.. +.+|.| .|+|++.-.
T Consensus        34 ~v~LlkG~~~l~~--~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~   85 (99)
T cd07689          34 EIELLKGETLLPS--KSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLH   85 (99)
T ss_pred             EEEEecCcceecc--cccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEe
Confidence            5899987665554  211000 0  0 11234555555 477777 999999743

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA03042 CD47-like protein; Provisional

Probab=81.24  E-value=12  Score=24.18  Aligned_cols=26  Identities=35%  Similarity=0.554  Sum_probs=18.0

Q ss_pred             CCCCCeeeEEEeecCccceeeEEEEE
Q psy3272          87 QSTDFGNYSCVADNNLGRAKKYMELS  112 (115)
Q Consensus        87 ~~~d~G~y~C~~~n~~~~~~~~~~l~  112 (115)
                      ...-.|+|+|.+.+.....+..+.|.
T Consensus        78 ~~~l~GNYTCEv~~l~n~gk~~IeLk  103 (286)
T PHA03042         78 SKNLSGNYTCEAINKFNKIKNTIELQ  103 (286)
T ss_pred             cccCCCceeEEEeecccCccEEEEEE
Confidence            44457999999998776555555443

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=80.96  E-value=2  Score=23.10  Aligned_cols=49  Identities=8%  Similarity=0.059  Sum_probs=22.8

Q ss_pred             ceEEEECCEEeCCCCCCCEEEE---EeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLME---TRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|.++|.. ...... ....   ...-.+.|.+..-.-.....|+|.+....
T Consensus        38 ~V~W~~~g~~-~~~~t~-~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~   89 (99)
T cd04986          38 VFTWTPSGGK-EAVQTS-AESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPE   89 (99)
T ss_pred             EEEEEECCcc-CcEEcC-cccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCC
Confidence            6899999864 221000 0000   00113445443222222346999997643

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	115
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		2e-05
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		7e-05
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		8e-05
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		8e-05
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-04
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		2e-04
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-04
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		4e-04

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 47/154 (30%)
Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA------- 56
           +SW ++  LI+  + D R    R N   LTI +V+ +D G Y C A+N +G A       
Sbjct: 39  ISWTRNKILIK--LFDTR-YSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGAL 95
Query: 57  --KKYMELSVSVSDRRLME---------TRGNKH------------------------TL 81
             K   +++    + +++E         T GN                          +L
Sbjct: 96  QVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSL 155
Query: 82  TIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
            I NVQ  D G Y CVA N+LG A  Y +L +LE
Sbjct: 156 RIHNVQKEDAGQYRCVAKNSLGTA--YSKLVKLE 187

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG 54
           ++W++D   ++PS S+ R+ + R     L I++ + TD G Y CVA N+ G
Sbjct: 140 ITWFKDFLPVDPSASNGRIKQLRSG--ALQIESSEETDQGKYECVATNSAG 188

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG 54
           ++W++D   ++PS S+ R+ + R     L I++ + TD G Y CVA N+ G
Sbjct: 140 ITWFKDFLPVDPSASNGRIKQLRSG--ALQIESSEETDQGKYECVATNSAG 188

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG 54
           ++W++D   ++PS S+ R+ + R     L I++ + TD G Y CVA N+ G
Sbjct: 140 ITWFKDFLPVDPSASNGRIKQLRSG--ALQIESSEETDQGKYECVATNSAG 188

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG 54
           ++W++D   ++PS S+ R+ + R     L I++ + TD G Y CVA N+ G
Sbjct: 140 ITWFKDFLPVDPSTSNGRIKQLRSGG--LQIESSEETDQGKYECVASNSAG 188

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG 54
           +SW++D   ++P+ S+ R+ + R     L I++ + +D G Y CVA N+ G
Sbjct: 141 ISWFKDFLPVDPAASNGRIKQLRSG--ALQIESSEESDQGKYECVATNSAG 189

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG 54
           +SW++D   ++P+ S+ R+ + R     L I++ + +D G Y CVA N+ G
Sbjct: 140 ISWFKDFLPVDPATSNGRIKQLRSG--ALQIESSEESDQGKYECVATNSAG 188

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
           +SW  D   + P  + + L+   G  H+L I+ V S D G Y+C+A N  G+    +EL 
Sbjct: 41  LSWQLDGKPVRPDSAHKMLVRENG-VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV 99
Query: 64  VSVSD 68
           V+  +
Sbjct: 100 VAAKE 104

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	115
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	6e-24
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	8e-22
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-20
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-20
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-19
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-13
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	9e-24
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	9e-13
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	4e-23
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	6e-12
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	8e-23
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	9e-23
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	7e-13
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-21
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	5e-12
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	3e-21
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	8e-11
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-20
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	5e-11
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-09
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-19
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-10
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	5e-10
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-18
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-11
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	7e-18
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	6e-17
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-11
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-10
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-17
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-13
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	6e-08
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-05
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-17
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-11
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	4e-17
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-08
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	6e-17
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	7e-10
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	1e-09
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-16
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	7e-08
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-05
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-05
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	4e-04
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-16
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-11
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-16
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-15
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-13
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-13
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-12
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-07
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-07
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	9e-07
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	4e-16
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	5e-16
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	7e-12
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-09
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	9e-16
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-15
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-13
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	9e-11
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-09
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-07
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-07
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-07
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-07
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-07
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	9e-06
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	1e-15
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	3e-11
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-15
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-14
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-10
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-09
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-15
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-15
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-08
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	7e-08
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-07
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-15
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-07
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-15
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-14
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-11
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-06
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-15
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	5e-15
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-11
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	7e-09
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	4e-15
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-09
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	4e-15
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	3e-11
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	8e-15
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-14
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-10
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-09
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-14
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-08
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-07
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-14
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	9e-13
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-11
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	9e-11
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	4e-09
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-07
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-14
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-12
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-07
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	9e-07
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-14
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-08
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-07
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-06
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-14
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-14
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-13
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-12
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-12
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-10
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	9e-09
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-05
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	5e-14
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-09
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-07
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-14
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-10
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-09
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-07
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-07
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	6e-14
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	2e-11
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	7e-14
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-09
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-06
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-06
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	9e-06
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	8e-14
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	7e-11
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	9e-14
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	8e-12
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-09
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-08
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	1e-13
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-10
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	1e-13
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	6e-12
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-13
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-12
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-11
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-06
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-13
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	9e-11
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-13
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-11
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	8e-11
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-08
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-06
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-04
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-13
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	8e-09
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-13
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-10
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-13
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	5e-09
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-13
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	4e-09
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	6e-05
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-13
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-10
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	3e-13
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	3e-10
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	3e-13
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	4e-10
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	3e-13
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-10
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	4e-13
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-06
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	9e-06
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	4e-13
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	2e-10
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	4e-13
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	7e-06
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	4e-13
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-09
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	8e-13
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-08
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	1e-12
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	2e-09
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-12
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	3e-12
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-11
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-06
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-12
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	4e-07
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	5e-06
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-12
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	6e-09
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	2e-12
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	4e-09
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-12
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-08
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-12
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-09
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	2e-12
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	9e-10
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-12
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	8e-10
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-12
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-10
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	3e-12
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-09
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	3e-12
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	1e-08
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-12
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	5e-10
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	4e-12
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	4e-10
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	5e-12
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	1e-09
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	6e-12
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	4e-08
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	7e-12
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	4e-11
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	7e-11
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	6e-10
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	3e-08
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	5e-07
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	7e-12
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-09
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	7e-12
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-09
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	8e-12
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-07
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	4e-05
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	8e-12
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	5e-09
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	1e-11
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	2e-08
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-11
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	6e-09
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	3e-04
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	1e-11
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	1e-07
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-11
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	6e-09
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-11
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-08
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	9e-08
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-06
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	3e-11
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-08
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	3e-11
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	7e-11
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	3e-06
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	4e-11
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	4e-08
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-07
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-06
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	4e-11
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-07
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	4e-11
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-07
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	4e-07
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-05
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	5e-11
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	4e-09
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	5e-11
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-08
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-06
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	5e-04
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	6e-11
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-08
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-10
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-08
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-07
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-07
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	5e-06
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	7e-06
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-10
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-07
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-10
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	8e-09
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	4e-06
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	8e-06
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-05
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-10
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	4e-08
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-10
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	4e-07
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	3e-10
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-06
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	3e-10
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	1e-07
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	5e-10
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-07
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	6e-10
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-09
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	8e-10
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-09
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-07
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-06
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-09
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	2e-06
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	1e-09
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	3e-07
2ens_A	96	Advanced glycosylation END product-specific recept	1e-09
2ens_A	96	Advanced glycosylation END product-specific recept	1e-07
1he7_A	126	High affinity nerve growth factor receptor; transf	1e-09
1he7_A	126	High affinity nerve growth factor receptor; transf	5e-07
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-09
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-06
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-09
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	1e-07
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	2e-09
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-07
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-09
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-06
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	4e-09
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	4e-07
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	5e-09
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	4e-07
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	8e-09
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	9e-08
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-06
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	5e-05
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	1e-08
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	1e-05
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-08
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	7e-07
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-08
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	2e-08
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	6e-07
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	4e-08
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	1e-06
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	6e-08
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	8e-05
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	7e-08
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	9e-05
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	8e-08
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-07
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-06
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-05
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-04
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-04
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	4e-04
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-07
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-05
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	3e-05
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	1e-07
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	4e-05
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-07
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	4e-05
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-07
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	8e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-07
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	8e-05
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-04
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-07
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-06
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	7e-07
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	2e-05
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-06
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-06
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-05
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	3e-04
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	1e-06
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	3e-06
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	7e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-05
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	6e-06
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	3e-05
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-04
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	3e-04
1nez_G	128	T-cell surface glycoprotein CD8 alpha chain; immun	1e-05
1nez_G	128	T-cell surface glycoprotein CD8 alpha chain; immun	4e-05
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-05
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	6e-04
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	2e-05
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	5e-05
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	5e-05
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	6e-05
3dmm_C	166	T-cell surface glycoprotein CD8 alpha chain; T cel	8e-05
3dmm_C	166	T-cell surface glycoprotein CD8 alpha chain; T cel	3e-04
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	9e-05
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	4e-04
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	1e-04
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	4e-04
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	1e-04
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	1e-04
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	3e-04
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	1e-04
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	1e-04
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	2e-04
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	7e-04
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	2e-04
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	3e-04
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	3e-04
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	6e-04
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	4e-04
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	5e-04
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	5e-04
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	5e-04
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	7e-04
3khq_A	133	B-cell antigen receptor complex-associated protei	7e-04
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	8e-04

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 94.1 bits (234), Expect = 6e-24
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 47/153 (30%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           SW++D   +      +  + +     ++ I NV S D G Y C A N++G       +++
Sbjct: 417 SWHKDKRELRSG--KKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITL 474

Query: 65  SV---------------------------------------------SDRRLMETRGNKH 79
                                                          SD   +    N  
Sbjct: 475 KAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIA 534

Query: 80  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           TL     +  + G Y+C   N  G  + +  LS
Sbjct: 535 TLQFSRAEPANAGKYTCQIKNEAGTQECFATLS 567

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 87.9 bits (218), Expect = 8e-22
 Identities = 29/152 (19%), Positives = 46/152 (30%), Gaps = 46/152 (30%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            WY+D   I+ S   +  M    +   L + N+   D G+Y+C A N  G A     L V
Sbjct: 324 LWYKDETEIQES--SKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV 381

Query: 65  SV--------------------------------------------SDRRLMETRGNKHT 80
                                                           +  + +     +
Sbjct: 382 KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS 441

Query: 81  LTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           + I NV S D G Y C A N++G       ++
Sbjct: 442 IHILNVDSADIGEYQCKASNDVGSDTCVGSIT 473

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 84.5 bits (209), Expect = 1e-20
 Identities = 33/155 (21%), Positives = 45/155 (29%), Gaps = 49/155 (31%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           SWY+D  L++             N  TL I     +  G Y+C A N LG A    +L++
Sbjct: 134 SWYKDGELLKDD--ANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTL 191

Query: 65  SV-----------------------------------------------SDRRLMETRGN 77
           S                                                     M    N
Sbjct: 192 SEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN 251

Query: 78  KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
             TLT+  V   D G Y+C A N  G+     +L 
Sbjct: 252 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG 286

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 84.1 bits (208), Expect = 2e-20
 Identities = 32/153 (20%), Positives = 44/153 (28%), Gaps = 47/153 (30%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           +W +D   I P       M    N  TLT+  V   D G Y+C A N  G+     +L V
Sbjct: 230 TWAKDNREIRPG--GNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 287

Query: 65  SV---------------------------------------------SDRRLMETRGNKH 79
                                                          S +  M    +  
Sbjct: 288 QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 347

Query: 80  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
            L + N+   D G+Y+C A N  G A     L 
Sbjct: 348 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK 380

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 81.0 bits (200), Expect = 2e-19
 Identities = 28/155 (18%), Positives = 48/155 (30%), Gaps = 49/155 (31%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           +WY++   +  + + +  M+ + N  +L I  V  +D G Y+C A+N++G       L +
Sbjct: 38  AWYKEHTKLRSAPAYK--MQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVI 95

Query: 65  SV-----------------------------------------------SDRRLMETRGN 77
                                                                      N
Sbjct: 96  KERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHN 155

Query: 78  KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
             TL I     +  G Y+C A N LG A    +L+
Sbjct: 156 VATLQILQTDQSHVGQYNCSASNPLGTASSSAKLT 190

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 64.1 bits (156), Expect = 2e-13
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           +W++D   I    SD   +    N  TL     +  + G Y+C   N  G  + +  LSV
Sbjct: 510 AWFKDKGEIVRE-SDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 89.0 bits (221), Expect = 9e-24
 Identities = 34/155 (21%), Positives = 47/155 (30%), Gaps = 47/155 (30%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           SW++D  +I  S      +     +  LTI  V   + G YS  A N  G+A    EL V
Sbjct: 38  SWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLV 97

Query: 65  SV-----------------------------------------------SDRRLMETRGN 77
                                                            S    +   G+
Sbjct: 98  KAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGD 157

Query: 78  KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
            ++L I      D G YS  A N++GRA    EL 
Sbjct: 158 LYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELL 192

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 60.5 bits (147), Expect = 9e-13
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            +Y+D   I+ S      +   G+ ++L I      D G YS  A N++GRA    EL V
Sbjct: 136 KFYRDGAEIQSS--LDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 87.8 bits (218), Expect = 4e-23
 Identities = 29/156 (18%), Positives = 48/156 (30%), Gaps = 50/156 (32%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            WY+    +  S   +  M + G  HTLT+   +  D G Y+C+A N +G  +   +L +
Sbjct: 40  KWYRFGKELIQS--RKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLL 97

Query: 65  SV-----------------------------------------------SDRRLMETRGN 77
                                                            S+   +E   +
Sbjct: 98  QATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEH 157

Query: 78  KHTLTIKNVQS-TDFGNYSCVADNNLGRAKKYMELS 112
              L +KNVQ  T  G Y     N  G     +++ 
Sbjct: 158 YTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVE 193

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 58.2 bits (141), Expect = 6e-12
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQS-TDFGNYSCVADNNLGRAKKYMELS 63
           +W+    L++ S  +   +E   +   L +KNVQ  T  G Y     N  G     +++ 
Sbjct: 136 TWFHGQKLLQNS--ENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVE 193

Query: 64  V 64
           +
Sbjct: 194 I 194

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 88.6 bits (220), Expect = 8e-23
 Identities = 29/152 (19%), Positives = 46/152 (30%), Gaps = 46/152 (30%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            WY+D   I+ S   +  M    +   L + N+   D G+Y+C A N  G A     L V
Sbjct: 132 LWYKDETEIQES--SKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV 189

Query: 65  SV--------------------------------------------SDRRLMETRGNKHT 80
                                                           +  + +     +
Sbjct: 190 KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS 249

Query: 81  LTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           + I NV S D G Y C A N++G       ++
Sbjct: 250 IHILNVDSADIGEYQCKASNDVGSYTCVGSIT 281

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 88.6 bits (220), Expect = 9e-23
 Identities = 32/153 (20%), Positives = 44/153 (28%), Gaps = 47/153 (30%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           +W +D   I P       M    N  TLT+  V   D G Y+C A N  G+     +L V
Sbjct: 38  TWAKDNREIRPG--GNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 95

Query: 65  SV---------------------------------------------SDRRLMETRGNKH 79
                                                          S +  M    +  
Sbjct: 96  QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 155

Query: 80  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
            L + N+   D G+Y+C A N  G A     L 
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK 188

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 62.1 bits (151), Expect = 7e-13
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           SW++D   +      +  + +     ++ I NV S D G Y C A N++G       +++
Sbjct: 225 SWHKDKRELRSG--KKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 82.8 bits (205), Expect = 3e-21
 Identities = 29/158 (18%), Positives = 40/158 (25%), Gaps = 50/158 (31%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            WY+    I       R+ E +G  H L I +V   D   Y   A N  G       L V
Sbjct: 37  KWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEV 96

Query: 65  SV-------------------------------------------------SDRRLMETR 75
            V                                                 +    +   
Sbjct: 97  EVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT 156

Query: 76  GNKHTLT-IKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
            +  +L     V+  D G Y   A N  G  +K +EL 
Sbjct: 157 RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 55.1 bits (133), Expect = 8e-11
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLT-IKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
           +W +   LI+ +      +    +  +L     V+  D G Y   A N  G  +K +EL 
Sbjct: 137 TWQKGQDLIDNN--GHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194

Query: 64  V 64
           V
Sbjct: 195 V 195

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 82.1 bits (203), Expect = 3e-20
 Identities = 30/157 (19%), Positives = 41/157 (26%), Gaps = 50/157 (31%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            WY+    I       R+ E +G  H L I +V   D   Y   A N  G       L V
Sbjct: 37  KWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEV 96

Query: 65  SV--------------------------------------------------SDRRLMET 74
            V                                                     +++ T
Sbjct: 97  EVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT 156

Query: 75  RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
           R     +    V+  D G Y   A N  G  +K +EL
Sbjct: 157 RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 57.1 bits (138), Expect = 5e-11
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
           ++W +   LI+ +    +++ TR     +    V+  D G Y   A N  G  +K +EL 
Sbjct: 136 ITWQKGQDLIDNN-GHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194

Query: 64  V 64
           V
Sbjct: 195 V 195

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 53.2 bits (128), Expect = 1e-09
 Identities = 14/52 (26%), Positives = 18/52 (34%)

Query: 61  ELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           E+       R+ E +G  H L I +V   D   Y   A N  G       L 
Sbjct: 44  EIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLE 95

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 80.7 bits (199), Expect = 2e-19
 Identities = 27/153 (17%), Positives = 47/153 (30%), Gaps = 49/153 (32%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY-MELS 63
           +++++   +  +  DR     R +   L  K     D G Y+C  DN +G+ +K+ ++L+
Sbjct: 245 NYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLT 304

Query: 64  VSV--------------------------------------------SDRRLMETRGNKH 79
           V                                                R  +       
Sbjct: 305 VVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTD----S 360

Query: 80  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
            L IK V++ D G Y C A N  G       + 
Sbjct: 361 GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 55.3 bits (133), Expect = 2e-10
 Identities = 25/158 (15%), Positives = 36/158 (22%), Gaps = 60/158 (37%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA-------- 56
           SW +D         +  L +  G   +L     Q++D G+Y C A+   G A        
Sbjct: 40  SWKKDGKSYNWQEHNAALRKDEG---SLVFLRPQASDEGHYQCFAETPAGVASSRVISFR 96

Query: 57  --------------------------------------------KKYMELSVSVSDRRLM 72
                                                              V+  DRR+ 
Sbjct: 97  KTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRIT 156

Query: 73  ETRGNKHTLTIKNVQSTD---FGNYSCVADNNLGRAKK 107
                   L    V   D      Y C A N     + 
Sbjct: 157 AGPDG--NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEV 192

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 54.1 bits (130), Expect = 5e-10
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 7/61 (11%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W  +    +P    R  +        L IK V++ D G Y C A N  G       + V
Sbjct: 342 VWSHNA---KPLSGGRATVTD----SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394

Query: 65  S 65
           +
Sbjct: 395 N 395

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 77.9 bits (192), Expect = 2e-18
 Identities = 29/162 (17%), Positives = 51/162 (31%), Gaps = 51/162 (31%)

Query: 5   SWYQDTFLIEPSVSD-----RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY 59
           +W +       +  D     R  ++ +    +L IK+V+ +D G Y C A + +G  +K 
Sbjct: 33  TWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKS 92

Query: 60  MELSVSV----------------------------------------------SDRRLME 73
           M L +                                                +      
Sbjct: 93  MYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTY 152

Query: 74  TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
           + G K  L I      DFG Y+C A N++G   +   L+  +
Sbjct: 153 STGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALAD 194

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 58.7 bits (142), Expect = 1e-11
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
           + W +D  ++    +      + G K  L I      DFG Y+C A N++G   +   L+
Sbjct: 132 IHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILA 191

Query: 64  V 64
           +
Sbjct: 192 L 192

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 76.4 bits (188), Expect = 7e-18
 Identities = 31/152 (20%), Positives = 43/152 (28%), Gaps = 51/152 (33%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           +W +   +I+       L+        L I NV   D G Y+CV            EL+V
Sbjct: 254 TWLRGEEVIQLRSKKYSLLGG----SNLLISNVTDDDSGTYTCVVTYKNENISASAELTV 309

Query: 65  SV--------------------------------------------SDRRLMETRGNKHT 80
            V                                            SD   +        
Sbjct: 310 LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGS---N 366

Query: 81  LTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           L I  V  +D G Y CVA+N  G A+   +L 
Sbjct: 367 LRILGVVKSDEGFYQCVAENEAGNAQSSAQLI 398

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 73.7 bits (181), Expect = 6e-17
 Identities = 28/157 (17%), Positives = 42/157 (26%), Gaps = 51/157 (32%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG-RAKKYMELS 63
            W ++   + P   D R++        L I  +Q  D G Y C A N    R     E+ 
Sbjct: 154 HWQKNQQDLNPIPGDSRVVVLPSG--ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVR 211

Query: 64  VSVS------------------------------------------DRRLMETRGNKH-- 79
           +                                                +++ R  K+  
Sbjct: 212 ILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSL 271

Query: 80  ----TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
                L I NV   D G Y+CV            EL+
Sbjct: 272 LGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELT 308

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 57.9 bits (140), Expect = 2e-11
 Identities = 26/151 (17%), Positives = 39/151 (25%), Gaps = 54/151 (35%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNV-----QSTDFGNYSCVADNNLGRAKKY 59
            W +D  ++   + DR+     G   +L I+N+        D G Y C A      +   
Sbjct: 55  KWKKDGLILALGMDDRKQQLPNG---SLLIQNILHSRHHKPDEGLYQCEASLGDSGSIIS 111

Query: 60  MELSVSVS---------------------------------------DRRLMETRGNKH- 79
               V V+                                        + L    G+   
Sbjct: 112 RTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRV 171

Query: 80  ------TLTIKNVQSTDFGNYSCVADNNLGR 104
                  L I  +Q  D G Y C A N    
Sbjct: 172 VVLPSGALQISRLQPGDSGVYRCSARNPAST 202

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 55.2 bits (133), Expect = 2e-10
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           +W ++  ++ PS  D   +        L I  V  +D G Y CVA+N  G A+   +L V
Sbjct: 345 NWMKNGDVVIPS--DYFQIVGGS---NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 75.2 bits (185), Expect = 1e-17
 Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 44/150 (29%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG-RAKKYMELS 63
           +W++D   ++PS S+ R+ + R     L I++ + TD G Y CVA N+ G R      L 
Sbjct: 141 TWFKDFLPVDPSASNGRIKQLRS--GALQIESSEETDQGKYECVATNSAGVRYSSPANLY 198

Query: 64  VSV-----------SDRRLME--------------------TRGNK----------HTLT 82
           V V               +M                      +G +              
Sbjct: 199 VRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNV 258

Query: 83  IKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           ++     D  NY+CVA ++LG  +   +++
Sbjct: 259 LELTDVKDSANYTCVAMSSLGVIEAVAQIT 288

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 64.1 bits (156), Expect = 1e-13
 Identities = 26/151 (17%), Positives = 44/151 (29%), Gaps = 53/151 (35%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQST-DFGNYSCVADNNLGRAKKYMELS 63
           +W +    +        +         L I+ +++  D   Y CVA N++G    + +L+
Sbjct: 39  TWNKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLT 97

Query: 64  VSVSDRRLM------------------------ETRGN---------------------- 77
           V   D+                              GN                      
Sbjct: 98  VLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGR 157

Query: 78  -----KHTLTIKNVQSTDFGNYSCVADNNLG 103
                   L I++ + TD G Y CVA N+ G
Sbjct: 158 IKQLRSGALQIESSEETDQGKYECVATNSAG 188

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 48.3 bits (115), Expect = 6e-08
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 8/60 (13%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W Q    + P   D   +          ++     D  NY+CVA ++LG  +   +++V
Sbjct: 238 KWMQGAEDLTPE--DDMPV------GRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITV 289

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 65  SVSDRRLMETRGNKHTLTIKNVQST-DFGNYSCVADNNLGRAKKYMELS 112
           S     +         L I+ +++  D   Y CVA N++G    + +L+
Sbjct: 49  SQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLT 97

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 73.2 bits (180), Expect = 1e-17
 Identities = 37/146 (25%), Positives = 53/146 (36%), Gaps = 51/146 (34%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM-ELS 63
           SW ++  LI+   +   + E   N   LTI +V+ +D G Y C A+N +G A +    L 
Sbjct: 40  SWTRNKILIKLFDTRYSIRE---NGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQ 96

Query: 64  VSV--------------------------------------------SDRRLMETRGNKH 79
           V +                                            + R  +   G   
Sbjct: 97  VKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG--- 153

Query: 80  TLTIKNVQSTDFGNYSCVADNNLGRA 105
           +L I NVQ  D G Y CVA N+LG A
Sbjct: 154 SLRIHNVQKEDAGQYRCVAKNSLGTA 179

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 57.8 bits (140), Expect = 1e-11
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELS 63
           SW +    +  +   R  +   G   +L I NVQ  D G Y CVA N+LG A  K ++L 
Sbjct: 133 SWIKGDSALREN--SRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLE 187

Query: 64  VSV 66
           V V
Sbjct: 188 VEV 190

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 72.2 bits (177), Expect = 4e-17
 Identities = 27/158 (17%), Positives = 45/158 (28%), Gaps = 52/158 (32%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY-MELS 63
            W  + F +  ++  RR +        L I NV+++D GNYSC   +       +   + 
Sbjct: 43  RWLLNEFPVFITMDKRRFVSQTN--GNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIP 100

Query: 64  VSVSDRRLME-------------------------------------------------T 74
           +     R  +                                                  
Sbjct: 101 LIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEI 160

Query: 75  RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
             +   L I N+Q  D G Y C A+N  G+ K    + 
Sbjct: 161 STSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIY 198

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 49.5 bits (118), Expect = 1e-08
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W +    +  +       E   +   L I N+Q  D G Y C A+N  G+ K    + V
Sbjct: 146 RWRKVLEPMPSTA------EISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 71.9 bits (176), Expect = 3e-16
 Identities = 27/142 (19%), Positives = 44/142 (30%), Gaps = 34/142 (23%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            WY+         +       +    TL IK+    D G Y CV +N++G       L+V
Sbjct: 245 RWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 304

Query: 65  SV----------------SDRRLM-ETRG-----------------NKHTLTIKNVQSTD 90
           +                        +  G                 ++  L I++V+  D
Sbjct: 305 TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKED 364

Query: 91  FGNYSCVADNNLGRAKKYMELS 112
            G Y C   N+   A+   EL 
Sbjct: 365 KGMYQCFVRNDRESAEASAELK 386

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 48.0 bits (114), Expect = 7e-08
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           SW +D   I  S            +  L I++V+  D G Y C   N+   A+   EL +
Sbjct: 340 SWMKDGKAIGHS------------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 9/58 (15%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDF------GNYSCVADNNLGRA 56
           W +        V   R + + G    L     ++ D+        Y+C+A N  G  
Sbjct: 37 IWIRSDGTAVGDVPGLRQISSDG---KLVFPPFRAEDYRQEVHAQVYACLARNQFGSI 91

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 5/57 (8%)

Query: 5   SWYQD--TFLIEPSVSDRRLMETRGNKHTLTIKNVQSTD-FGNYSCVADNNLGRAKK 58
           SW+ D        +  D + +        L I+ V   D + +Y C   + L    +
Sbjct: 139 SWHTDEEENYFPGAEYDGKYLVLPSG--ELHIREVGPEDGYKSYQCRTKHRLTGETR 193

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 37.2 bits (86), Expect = 4e-04
 Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 4/42 (9%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTD-FGNYSCVADNNLGRAKK 107
             + L+   G    L I+ V   D + +Y C   + L    +
Sbjct: 155 DGKYLVLPSGE---LHIREVGPEDGYKSYQCRTKHRLTGETR 193

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 69.8 bits (171), Expect = 3e-16
 Identities = 27/154 (17%), Positives = 44/154 (28%), Gaps = 49/154 (31%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           SW      +     +R  M        L I N+  +D G Y C           + ++ V
Sbjct: 35  SWLYHNEEVTTISDNRFAMLANN---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV 91

Query: 65  SVS-----------------------------------------DRRLMETR-----GNK 78
            V+                                          + + E       G+ 
Sbjct: 92  IVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN 151

Query: 79  HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
             LT++N+ ++D G Y C A N  G  +K   L 
Sbjct: 152 TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 185

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 56.7 bits (137), Expect = 3e-11
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           SW+++  LIE +  ++ +++  G+   LT++N+ ++D G Y C A N  G  +K   L V
Sbjct: 131 SWFRNGKLIEEN--EKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186

Query: 65  SV 66
            V
Sbjct: 187 FV 188

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 71.9 bits (176), Expect = 3e-16
 Identities = 26/144 (18%), Positives = 43/144 (29%), Gaps = 40/144 (27%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            WY+         +       +    TL IK+    D G Y CV +N++G       L+V
Sbjct: 281 RWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 340

Query: 65  SVS-------------------------------------DRRLMETRGNKHTLTIKNVQ 87
           +                                        + +  +      L I++V+
Sbjct: 341 TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES---VLRIESVK 397

Query: 88  STDFGNYSCVADNNLGRAKKYMEL 111
             D G Y C   N+   A+   EL
Sbjct: 398 KEDKGMYQCFVRNDRESAEASAEL 421

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 70.3 bits (172), Expect = 1e-15
 Identities = 29/148 (19%), Positives = 46/148 (31%), Gaps = 48/148 (32%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W  D   I   +        R     LTI+ V+++  GN++C A N  G  +    L+V
Sbjct: 653 DWTLDGQAISEDLGITTSRVGRRG-SVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNV 711

Query: 65  SV-------------------------------------------SDRRLMETRGNKH-- 79
            V                                            + + ++   N    
Sbjct: 712 YVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVE 771

Query: 80  --TLTIKNVQSTDFGNYSCVADNNLGRA 105
             TL + N+Q T+ G Y C A N +G  
Sbjct: 772 EGTLHVDNIQKTNEGYYLCEAINGIGSG 799

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 63.8 bits (155), Expect = 2e-13
 Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 44/147 (29%)

Query: 5   SWYQDTFLIEPS---VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 61
           SW  D   I  +      + +         L I +V + D G Y C+A + +G A+   +
Sbjct: 462 SWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAK 521

Query: 62  LSVSV-------SDRRLME--------------------TRGNK-------------HTL 81
           L+V           + ++                      R N+              TL
Sbjct: 522 LNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTL 581

Query: 82  TIKNVQ-STDFGNYSCVADNNLGRAKK 107
            I+NV+ ++D   Y+CVA N  G + +
Sbjct: 582 IIENVERNSDQATYTCVAKNQEGYSAR 608

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 63.0 bits (153), Expect = 5e-13
 Identities = 28/153 (18%), Positives = 44/153 (28%), Gaps = 64/153 (41%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           SW +D   I  S            +  L I++V+  D G Y C   N+   A+   EL +
Sbjct: 376 SWMKDGKAIGHS------------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 423

Query: 65  SV-----------------------------------------------SDRRLMETRGN 77
                                                            +DR  +     
Sbjct: 424 GGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVT 483

Query: 78  KH-----TLTIKNVQSTDFGNYSCVADNNLGRA 105
            +      L I +V + D G Y C+A + +G A
Sbjct: 484 VNGDVVSYLNITSVHANDGGLYKCIAKSKVGVA 516

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 61.9 bits (150), Expect = 1e-12
 Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 54/156 (34%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQ-STDFGNYSCVADNNLGR-AKKYMEL 62
            W +D   +  +   ++ +   G   TL I+NV+ ++D   Y+CVA N  G  A+  +E+
Sbjct: 559 VWERDNRALPIN--RKQKVFPNG---TLIIENVERNSDQATYTCVAKNQEGYSARGSLEV 613

Query: 63  SVSV---------------------------------------------SDRRLMETR-- 75
            V V                                              D  +  +R  
Sbjct: 614 QVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVG 673

Query: 76  GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
                LTI+ V+++  GN++C A N  G  +    L
Sbjct: 674 RRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPL 709

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 49.5 bits (118), Expect = 2e-08
 Identities = 20/169 (11%), Positives = 38/169 (22%), Gaps = 64/169 (37%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDF------GNYSCVADNNLGRAK- 57
            W +        V   R + + G    L     ++ D+        Y+C+A N  G    
Sbjct: 72  IWIRSDGTAVGDVPGLRQISSDG---KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIIS 128

Query: 58  KYMELSVSV--------------------------------------------------- 66
           + + +   V                                                   
Sbjct: 129 RDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAE 188

Query: 67  SDRRLMETRGNKHTLTIKNVQSTD-FGNYSCVADNNLGRAKKYMELSEL 114
            D + +        L I+ V   D + +Y C   + L    +       
Sbjct: 189 YDGKYLVLPSG--ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGR 235

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 5   SWYQDTFLIEPSVSDRRLME-TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA-KKYMEL 62
           +W +          D +  +  R  + TL + N+Q T+ G Y C A N +G      + +
Sbjct: 747 TWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMI 806

Query: 63  SV 64
           SV
Sbjct: 807 SV 808

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 45.7 bits (108), Expect = 5e-07
 Identities = 14/129 (10%), Positives = 27/129 (20%), Gaps = 58/129 (44%)

Query: 32  LTIKNVQSTDFGNYSCVADNNLGRA----------------------------------- 56
           + + N +      ++ VA    G                                     
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60

Query: 57  --------------KKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDF------GNYSC 96
                         +        V   R + + G    L     ++ D+        Y+C
Sbjct: 61  CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG---KLVFPPFRAEDYRQEVHAQVYAC 117

Query: 97  VADNNLGRA 105
           +A N  G  
Sbjct: 118 LARNQFGSI 126

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 44.9 bits (106), Expect = 9e-07
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 80  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           TL IK+    D G Y CV +N++G       L+
Sbjct: 307 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT 339

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 69.1 bits (169), Expect = 4e-16
 Identities = 19/138 (13%), Positives = 38/138 (27%), Gaps = 37/138 (26%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELS 63
            W +D  +++        +  +     L++K+V+ +D G Y C  ++       + + L+
Sbjct: 35  QWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLT 94

Query: 64  VSV--------SDRRLME----------------------------TRGNKHTLTIKNVQ 87
           V           D  +                                       +    
Sbjct: 95  VEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTG 154

Query: 88  STDFGNYSCVADNNLGRA 105
            T    +SC A N  G A
Sbjct: 155 VTQSTMFSCEAHNLKGLA 172

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 71.4 bits (175), Expect = 5e-16
 Identities = 27/154 (17%), Positives = 43/154 (27%), Gaps = 48/154 (31%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           +WY+         SD+   E       L I NV   D G Y C+A N +G  +  + + V
Sbjct: 255 AWYKKG---GDLPSDKAKFENFN--KALRITNVSEEDSGEYFCLASNKMGSIRHTISVRV 309

Query: 65  SVS-------------------------------------DRRLMETRGNKH------TL 81
             +                                        L     N +      T+
Sbjct: 310 KAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTI 369

Query: 82  TIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
             ++ Q +    Y C   N  G       +S L+
Sbjct: 370 IFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 59.5 bits (144), Expect = 7e-12
 Identities = 28/165 (16%), Positives = 39/165 (23%), Gaps = 63/165 (38%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTD-FGNYSCVADNNLG---RAKKYM 60
            W   +         R      G+   L   NV   D   +YSC A  +     + K   
Sbjct: 150 FWMSSSMEPITQ-DKRVSQGHNGD---LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPF 205

Query: 61  ELSVSV-----------------------------------------------------S 67
            L V                                                       S
Sbjct: 206 TLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPS 265

Query: 68  DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           D+   E       L I NV   D G Y C+A N +G  +  + + 
Sbjct: 266 DKAKFENFN--KALRITNVSEEDSGEYFCLASNKMGSIRHTISVR 308

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 52.2 bits (125), Expect = 3e-09
 Identities = 27/153 (17%), Positives = 35/153 (22%), Gaps = 52/153 (33%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNV----QSTDFGNYSCVADNNLGRAK-KY 59
            W +++     +   R  M  R    TL I            G Y C A N  G A    
Sbjct: 50  HWTRNSRFFNIAKDPRVSMRRRS--GTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNR 107

Query: 60  MELSVSVSDRRLMETRGNKH---------------------------------------- 79
           + L VS S     E                                              
Sbjct: 108 IRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQ 167

Query: 80  ----TLTIKNVQSTD-FGNYSCVADNNLGRAKK 107
                L   NV   D   +YSC A  +     +
Sbjct: 168 GHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQ 200

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 70.6 bits (172), Expect = 9e-16
 Identities = 24/143 (16%), Positives = 44/143 (30%), Gaps = 46/143 (32%)

Query: 16  SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVS-------- 67
            ++      +  +   + +KN    D G+Y C+A +   + +  +   ++V         
Sbjct: 611 KLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTIT 670

Query: 68  ---------------------------------DRRLMETRG-----NKHTLTIKNVQST 89
                                            +  L+E  G         LTI+ V+  
Sbjct: 671 GNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKE 730

Query: 90  DFGNYSCVADNNLGRAKKYMELS 112
           D G Y+C A + LG AK      
Sbjct: 731 DEGLYTCQACSVLGCAKVEAFFI 753

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 69.8 bits (170), Expect = 2e-15
 Identities = 29/157 (18%), Positives = 48/157 (30%), Gaps = 48/157 (30%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKH------TLTIKNVQSTDFGNYSCVADNNLGRAK 57
            +W   +   +      R ++T+          TLTI  V  +D G Y+C A + L   K
Sbjct: 258 FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK 317

Query: 58  KYMELSVSVS---------------------------------------DRRLMETRGN- 77
               + V                                          +   +E+    
Sbjct: 318 NSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI 377

Query: 78  --KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
              H LTI  V   D GNY+ +  N + + K+   +S
Sbjct: 378 KAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVS 414

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 64.4 bits (156), Expect = 2e-13
 Identities = 22/155 (14%), Positives = 34/155 (21%), Gaps = 49/155 (31%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W  +    E  V +           TLTI  V   D G Y C        +  Y+ +  
Sbjct: 62  LWPNNQSGSEQRV-EVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQD 120

Query: 65  -----------SVSDRRLMETRG------------------------------------- 76
                            + E +                                      
Sbjct: 121 YRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWD 180

Query: 77  NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
           +K   TI +   +  G   C A  N    +  M +
Sbjct: 181 SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYI 215

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 56.3 bits (135), Expect = 9e-11
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W++D   +    S   L +       LTI+ V+  D G Y+C A + LG AK      +
Sbjct: 699 MWFKDNETLVED-SGIVLKD---GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 754

Query: 65  SVS 67
             +
Sbjct: 755 EGA 757

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 52.8 bits (126), Expect = 2e-09
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            WY++   +E + + +         H LTI  V   D GNY+ +  N + + K+   +S+
Sbjct: 363 KWYKNGIPLESNHTIK-------AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSL 415

Query: 65  SVSDR 69
            V   
Sbjct: 416 VVYVP 420

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 47.4 bits (112), Expect = 1e-07
 Identities = 13/119 (10%), Positives = 23/119 (19%), Gaps = 40/119 (33%)

Query: 34  IKNVQSTDFGNYSCVADNNLGRAKKYMELSV----------------------------- 64
           +++        + CV           + L +                             
Sbjct: 1   MQSKVLLAVALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIKANTTLQITCRGQRDLD 60

Query: 65  -----------SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
                         +           TLTI  V   D G Y C        +  Y+ + 
Sbjct: 61  WLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQ 119

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 46.3 bits (109), Expect = 3e-07
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
           +  +Q    IE +  ++  +    NK   T+    +     Y C A N +GR ++ +   
Sbjct: 488 VEDFQGGNKIEVN-KNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFH 546

Query: 64  VSV 66
           V+ 
Sbjct: 547 VTR 549

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 45.9 bits (108), Expect = 4e-07
 Identities = 11/42 (26%), Positives = 16/42 (38%)

Query: 28  NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDR 69
           +K   TI +   +  G   C A  N    +  M + V V  R
Sbjct: 181 SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYR 222

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 45.5 bits (107), Expect = 5e-07
 Identities = 8/62 (12%), Positives = 22/62 (35%)

Query: 51  NNLGRAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 110
                  K ++    ++      +  +   + +KN    D G+Y C+A +   + +  + 
Sbjct: 597 ELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVV 656

Query: 111 LS 112
             
Sbjct: 657 RQ 658

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 45.5 bits (107), Expect = 5e-07
 Identities = 14/44 (31%), Positives = 19/44 (43%)

Query: 72  METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
            E +    TLTI  V  +D G Y+C A + L   K    +   E
Sbjct: 283 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 326

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 42.1 bits (98), Expect = 9e-06
 Identities = 9/46 (19%), Positives = 18/46 (39%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
            ++  +    NK   T+    +     Y C A N +GR ++ +   
Sbjct: 501 KNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFH 546

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 69.9 bits (171), Expect = 2e-15
 Identities = 34/150 (22%), Positives = 50/150 (33%), Gaps = 56/150 (37%)

Query: 15  PSVS----DRRLMETRGNKH----TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV 66
           P++     D + +  +  +H     L I N Q  D G+Y CVA+N+ G+     +L+   
Sbjct: 235 PTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA 294

Query: 67  --------------------------------------------SDRRLMETRGNKHTLT 82
                                                        DR  +E    + TL 
Sbjct: 295 QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE----QGTLN 350

Query: 83  IKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           I  V  +D G Y CVA+N  G      ELS
Sbjct: 351 ITIVNLSDAGMYQCVAENKHGVIFSSAELS 380

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 66.8 bits (163), Expect = 2e-14
 Identities = 31/160 (19%), Positives = 52/160 (32%), Gaps = 56/160 (35%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YME 61
           +W  + +      + R + +  GN   L I  V+ +D GNY+CV  N +   K       
Sbjct: 136 AWIFNEYPSYQD-NRRFVSQETGN---LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTP 191

Query: 62  LSVSVS---------------------------------------------DRRLMETRG 76
           L +                                                D + +  + 
Sbjct: 192 LILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKA 251

Query: 77  NKH----TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
            +H     L I N Q  D G+Y CVA+N+ G+     +L+
Sbjct: 252 RRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLT 291

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 55.6 bits (134), Expect = 1e-10
 Identities = 30/159 (18%), Positives = 49/159 (30%), Gaps = 56/159 (35%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNV-QSTDFGNYSCVADNNLGRAK-KYMEL 62
            W  +   ++    D R     G   +L I N  ++ D G Y C+A N+ G    +  +L
Sbjct: 41  RWKLNGTDVDIG-MDFRYSVVDG---SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKL 96

Query: 63  SVSV-----------------------------------------------SDRRLMETR 75
             +                                                + R + +  
Sbjct: 97  QFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQET 156

Query: 76  GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114
           GN   L I  V+ +D GNY+CV  N +   K     + L
Sbjct: 157 GN---LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPL 192

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 53.3 bits (128), Expect = 1e-09
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W ++   +     DR  +E    + TL I  V  +D G Y CVA+N  G      ELSV
Sbjct: 328 RWLKNGDPLLTR--DRIQIE----QGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 69.7 bits (170), Expect = 2e-15
 Identities = 20/160 (12%), Positives = 37/160 (23%), Gaps = 53/160 (33%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGN---KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 61
            W            D    E   N      L +  ++ T+ G Y+ +  N+   A     
Sbjct: 347 QWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFN 406

Query: 62  LSVSV---------------------------------------------SDRRLMETRG 76
           + V+                                               D + + + G
Sbjct: 407 VYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSG 466

Query: 77  NKH-----TLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
                     +I +      G   C A N++G+   Y   
Sbjct: 467 PPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNF 506

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 68.5 bits (167), Expect = 6e-15
 Identities = 22/165 (13%), Positives = 40/165 (24%), Gaps = 56/165 (33%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKH---TLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60
            +W ++    +             N     TLTI + +  D G + C A+N  G A    
Sbjct: 244 STWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTT 303

Query: 61  ELSVSVS----------------------------------------DRRLMETRGNKHT 80
            L V                                             R    +   + 
Sbjct: 304 TLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYP 363

Query: 81  -------------LTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
                        L +  ++ T+ G Y+ +  N+   A     + 
Sbjct: 364 KSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVY 408

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 49.7 bits (118), Expect = 2e-08
 Identities = 21/141 (14%), Positives = 35/141 (24%), Gaps = 56/141 (39%)

Query: 28  NKHTLTIKNVQ-STDFGNYSCVADNNLG-RAKKYMELSV--------------------- 64
            K  + IK+V+ +       C  D        +   L V                     
Sbjct: 166 PKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLRE 225

Query: 65  ----------------------------SVSDRRLMETRGNKH-----TLTIKNVQSTDF 91
                                        + ++      G+ +     TLTI + +  D 
Sbjct: 226 GEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDS 285

Query: 92  GNYSCVADNNLGRAKKYMELS 112
           G + C A+N  G A     L 
Sbjct: 286 GVFMCYANNTFGSANVTTTLE 306

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 48.1 bits (114), Expect = 7e-08
 Identities = 13/129 (10%), Positives = 30/129 (23%), Gaps = 40/129 (31%)

Query: 19  DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA-----KKYMELSVSVSDRRLME 73
           +         ++    +  ++T+ G Y+C   + L  +     +   +L +        E
Sbjct: 69  EILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKE 128

Query: 74  ----------------------------------TRGNKHTLTIKNVQ-STDFGNYSCVA 98
                                                 K  + IK+V+ +       C  
Sbjct: 129 DNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSV 188

Query: 99  DNNLGRAKK 107
           D        
Sbjct: 189 DQEGKSVLS 197

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 45.8 bits (108), Expect = 4e-07
 Identities = 8/52 (15%), Positives = 19/52 (36%)

Query: 28  NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGNKH 79
                +I +      G   C A N++G+   Y   +   +++  +    + H
Sbjct: 472 LVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHPHHHHH 523

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 67.3 bits (164), Expect = 2e-15
 Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 27/133 (20%)

Query: 6   WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVS 65
             +    +      RR +  +GN   L IKN++  D   Y C  ++     +  +    +
Sbjct: 45  LTKGPSKLNDRADSRRSLWDQGNF-PLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA 103

Query: 66  VSDRRLME--------------------------TRGNKHTLTIKNVQSTDFGNYSCVAD 99
            SD  L++                                TL++  ++  D G ++C   
Sbjct: 104 NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVL 163

Query: 100 NNLGRAKKYMELS 112
            N  + +  +++ 
Sbjct: 164 QNQKKVEFKIDIV 176

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 7/37 (18%), Positives = 18/37 (48%)

Query: 28  NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
              TL++  ++  D G ++C    N  + +  +++ V
Sbjct: 141 GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 177

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 68.7 bits (168), Expect = 3e-15
 Identities = 23/158 (14%), Positives = 40/158 (25%), Gaps = 53/158 (33%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W      +      R ++ +      L I+ ++ TD G Y C           + ++ V
Sbjct: 133 IWKHKGRDVILKKDVRFIVLSNN---YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189

Query: 65  SVS-----------------------------------------DRRLMETR-------- 75
            V+                                            +            
Sbjct: 190 IVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIF 249

Query: 76  -GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
             +   LTI+NV   D   Y C+A+N  G     + L 
Sbjct: 250 SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 287

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 66.1 bits (161), Expect = 2e-14
 Identities = 22/146 (15%), Positives = 42/146 (28%), Gaps = 45/146 (30%)

Query: 5   SWY-QDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG-RAKKYMEL 62
           SW+  +   + P+     ++    +  TLTI N    D G Y CV     G +++  + +
Sbjct: 36  SWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNV 95

Query: 63  SVSVS-------------------------------------DRRLMETRGNKH------ 79
            +                                         R ++  +  +       
Sbjct: 96  KIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN 155

Query: 80  TLTIKNVQSTDFGNYSCVADNNLGRA 105
            L I+ ++ TD G Y C         
Sbjct: 156 YLQIRGIKKTDEGTYRCEGRILARGE 181

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 58.7 bits (142), Expect = 1e-11
 Identities = 19/62 (30%), Positives = 25/62 (40%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           SW +D   IE    D        +   LTI+NV   D   Y C+A+N  G     + L V
Sbjct: 229 SWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288

Query: 65  SV 66
             
Sbjct: 289 FA 290

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 43.3 bits (102), Expect = 3e-06
 Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 6/67 (8%)

Query: 46  SCVADNNLGRAK----KYMELSVSVSDRR--LMETRGNKHTLTIKNVQSTDFGNYSCVAD 99
            C    +               +S + +R  ++    +  TLTI N    D G Y CV  
Sbjct: 23  LCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVT 82

Query: 100 NNLGRAK 106
              G   
Sbjct: 83  AEDGTQS 89

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 68.3 bits (167), Expect = 3e-15
 Identities = 27/154 (17%), Positives = 44/154 (28%), Gaps = 49/154 (31%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           SW      +     +R  M        L I N+  +D G Y C           + ++ V
Sbjct: 131 SWLYHNEEVTTISDNRFAMLANN---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV 187

Query: 65  SVS-----------------------------------------DRRLMETR-----GNK 78
            V+                                          + + E       G+ 
Sbjct: 188 IVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN 247

Query: 79  HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
             LT++N+ ++D G Y C A N  G  +K   L 
Sbjct: 248 TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 281

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 67.9 bits (166), Expect = 5e-15
 Identities = 22/144 (15%), Positives = 40/144 (27%), Gaps = 46/144 (31%)

Query: 6   WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY-MELSV 64
           +      I  +   R +++  G +  LTI N    D G Y C A +  G+ ++  + L +
Sbjct: 38  YNPQGEKIIST--QRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 95

Query: 65  SVS-------------------------------------DRRLMETRGNK------HTL 81
                                                   +  +     N+      + L
Sbjct: 96  YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNL 155

Query: 82  TIKNVQSTDFGNYSCVADNNLGRA 105
            I N+  +D G Y C         
Sbjct: 156 QILNINKSDEGIYRCEGRVEARGE 179

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 57.5 bits (139), Expect = 2e-11
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           SW+++  LIE +  ++ +++  G+   LT++N+ ++D G Y C A N  G  +K   L V
Sbjct: 227 SWFRNGKLIEEN--EKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282

Query: 65  SV 66
            V
Sbjct: 283 FV 284

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 50.6 bits (121), Expect = 7e-09
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
           +  + R +++  G +  LTI N    D G Y C A +  G+ +
Sbjct: 45  IISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQ 87

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 66.8 bits (163), Expect = 4e-15
 Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 45/153 (29%)

Query: 5   SWY-QDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG-RAKKYMEL 62
           SW+  +   + P+     ++    +  TLTI N    D G Y CV     G +++  + +
Sbjct: 36  SWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNV 95

Query: 63  SVSVS-------------------------------------DRRLMETRGNK------H 79
            +                                         R ++  +  +      +
Sbjct: 96  KIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN 155

Query: 80  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
            L I+ ++ TD G Y C           + ++ 
Sbjct: 156 YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ 188

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 51.4 bits (123), Expect = 2e-09
 Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 3/62 (4%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W      +      R ++ +      L I+ ++ TD G Y C           + ++ V
Sbjct: 133 IWKHKGRDVILKKDVRFIVLSNN---YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189

Query: 65  SV 66
            V
Sbjct: 190 IV 191

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 66.4 bits (162), Expect = 4e-15
 Identities = 26/158 (16%), Positives = 41/158 (25%), Gaps = 58/158 (36%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W ++   +  +           +     I   ++ D G Y CV  + +   K    + V
Sbjct: 38  YWTKNGVELTAT-------RKNASNMEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEV 89

Query: 65  SV-------------------------------------------------SDRRLMETR 75
                                                              S R  +  +
Sbjct: 90  KAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINK 149

Query: 76  GNKHTLTIKNVQST-DFGNYSCVADNNLGRAKKYMELS 112
            N   L I N+Q T D G Y C A N++G A     L 
Sbjct: 150 ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLR 187

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 56.4 bits (136), Expect = 3e-11
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 5   SWYQDTFLIEPSV---SDRRLMETRGNKHTLTIKNVQST-DFGNYSCVADNNLGRAKKYM 60
            W +    +   +   S R  +  + N   L I N+Q T D G Y C A N++G A    
Sbjct: 125 MWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVST 184

Query: 61  ELSVSV 66
            L V V
Sbjct: 185 VLRVRV 190

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 68.0 bits (166), Expect = 8e-15
 Identities = 24/127 (18%), Positives = 34/127 (26%), Gaps = 48/127 (37%)

Query: 30  HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV----------------------- 66
             L I+NV   D G Y C A+N  GR      + +                         
Sbjct: 257 PLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSC 316

Query: 67  ---------------------SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
                                 +R  +    +   L    +   D G Y CVA+N  G  
Sbjct: 317 VASGKPRPAVRWLRDGQPLASQNRIEV----SGGELRFSKLVLEDSGMYQCVAENKHGTV 372

Query: 106 KKYMELS 112
               EL+
Sbjct: 373 YASAELT 379

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 65.7 bits (160), Expect = 4e-14
 Identities = 30/158 (18%), Positives = 48/158 (30%), Gaps = 52/158 (32%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK-----Y 59
            W  + F        RR +        L I   +++D GNYSC A +++    K     +
Sbjct: 135 RWLLNEFPNFIPADGRRFVSQTTG--NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKF 192

Query: 60  MELSVSVSDRRL---------------------------------------------MET 74
            +LS++  D R                                               + 
Sbjct: 193 SQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW 252

Query: 75  RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
             ++  L I+NV   D G Y C A+N  GR      + 
Sbjct: 253 LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRII 290

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 55.6 bits (134), Expect = 1e-10
 Identities = 23/160 (14%), Positives = 41/160 (25%), Gaps = 54/160 (33%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA-------- 56
            W  +   ++     R  +        +    V++ D G+Y CVA N  G          
Sbjct: 40  RWKMNGTELKMGPDSRYRLV---AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR 96

Query: 57  -----------------------------------------KKYMELSVSVSDRRLMETR 75
                                                           +    RR +   
Sbjct: 97  FGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQT 156

Query: 76  GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
                L I   +++D GNYSC A +++    K +     +
Sbjct: 157 TG--NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQ 194

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 52.9 bits (127), Expect = 2e-09
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W +D   +     +R  +    +   L    +   D G Y CVA+N  G      EL+V
Sbjct: 327 RWLRDGQPLASQ--NRIEV----SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 66.1 bits (161), Expect = 1e-14
 Identities = 22/152 (14%), Positives = 36/152 (23%), Gaps = 62/152 (40%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELS 63
            W++          ++ +    GN   L    V   D G Y C  +NN      ++ +L 
Sbjct: 51  QWFKM---------NKEI--PNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLD 99

Query: 64  VSV-----------------------SDRRLME--------------------------- 73
           V                         + ++LM                            
Sbjct: 100 VCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL 159

Query: 74  TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
           T   K    +  V     G Y C   N+    
Sbjct: 160 THETKKLYMVPYVDLEHQGTYWCHVYNDRDSQ 191

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 49.5 bits (118), Expect = 1e-08
 Identities = 10/78 (12%), Positives = 20/78 (25%), Gaps = 12/78 (15%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W+++   +               K    +  V     G Y C   N+           +
Sbjct: 151 QWFKNELPLTHE-----------TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE-I 198

Query: 65  SVSDRRLMETRGNKHTLT 82
            + +   +    NK   T
Sbjct: 199 IIDELNNLGHPDNKEQTT 216

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 46.0 bits (109), Expect = 3e-07
 Identities = 10/31 (32%), Positives = 11/31 (35%)

Query: 76  GNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
           GN   L    V   D G Y C  +NN     
Sbjct: 62  GNTSELIFNAVHVKDAGFYVCRVNNNFTFEF 92

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 66.9 bits (163), Expect = 2e-14
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 2/80 (2%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           +W  +   I  S  DR      G +  L I      D G Y     +     +K ++LS 
Sbjct: 141 NWSHNGSAIRYS--DRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 198

Query: 65  SVSDRRLMETRGNKHTLTIK 84
              D    E +  K     +
Sbjct: 199 QAYDEAYAEFQRLKQAAIAE 218

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 61.9 bits (150), Expect = 9e-13
 Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 1/62 (1%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           SW ++   +        L    G     TI  V + D G Y  V  N  G       +SV
Sbjct: 255 SWLKNEKALASD-DHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313

Query: 65  SV 66
            +
Sbjct: 314 FI 315

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 58.0 bits (140), Expect = 2e-11
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            WY+D   I     ++   + +    TL I      D G Y  +  ++ G+ K  ++L  
Sbjct: 40  VWYKDEREISVD--EK--HDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 95

Query: 65  SVSDRRLMETR 75
                 +ME  
Sbjct: 96  EAFKELMMEVC 106

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 56.1 bits (135), Expect = 9e-11
 Identities = 12/49 (24%), Positives = 18/49 (36%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           +  SDR      G +  L I      D G Y     +     +K ++LS
Sbjct: 149 IRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLS 197

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 51.5 bits (123), Expect = 4e-09
 Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 64  VSVSDRRLM-ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           ++  D   +    G     TI  V + D G Y  V  N  G       +S
Sbjct: 263 LASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 312

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           +SV ++   + +    TL I      D G Y  +  ++ G+ K  ++L 
Sbjct: 48  ISVDEK--HDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 94

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 66.7 bits (162), Expect = 2e-14
 Identities = 21/134 (15%), Positives = 45/134 (33%), Gaps = 29/134 (21%)

Query: 6   WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELSV 64
             +    +      RR +  +GN   L IKN++  D   Y C  ++     +     L+ 
Sbjct: 44  LTKGPSKLNDRADSRRSLWDQGNF-PLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA 102

Query: 65  SVSDRRLME--------------------------TRGNKHTLTIKNVQSTDFGNYSCVA 98
           + SD  L++                                TL++  ++  D G ++C  
Sbjct: 103 N-SDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTV 161

Query: 99  DNNLGRAKKYMELS 112
             N  + +  +++ 
Sbjct: 162 LQNQKKVEFKIDIV 175

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 60.2 bits (145), Expect = 3e-12
 Identities = 16/121 (13%), Positives = 33/121 (27%), Gaps = 24/121 (19%)

Query: 5   SWYQDTFLIEPSVSDRRLM--ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 62
                   ++    D +L   +      TL     Q    GN +   +   G+  + + L
Sbjct: 230 DLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNL 289

Query: 63  SV-SVSDRRLMET----------------RGNKH-----TLTIKNVQSTDFGNYSCVADN 100
            V   +  +   T                  NK            V + + G + C+  +
Sbjct: 290 VVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNPEAGMWQCLLSD 349

Query: 101 N 101
           +
Sbjct: 350 S 350

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 46.7 bits (110), Expect = 2e-07
 Identities = 7/37 (18%), Positives = 18/37 (48%)

Query: 28  NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
              TL++  ++  D G ++C    N  + +  +++ V
Sbjct: 140 GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 176

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 44.8 bits (105), Expect = 9e-07
 Identities = 12/98 (12%), Positives = 28/98 (28%), Gaps = 16/98 (16%)

Query: 31  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGNKH----------- 79
            L     + T  G     A+     +     ++  + ++ +   R  +            
Sbjct: 199 PLAFTVEKLTGSGELWWQAE---RASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPL 255

Query: 80  --TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
             TL     Q    GN +   +   G+  + + L  + 
Sbjct: 256 HLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR 293

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 65.9 bits (160), Expect = 3e-14
 Identities = 22/150 (14%), Positives = 34/150 (22%), Gaps = 53/150 (35%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           +WY+D      S      +        L     +  D G+Y CV  N+    +  +    
Sbjct: 39  TWYKDDSKTPVSTEQASRIHQHK--EKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKF 96

Query: 65  SVSDRRLMETR------------------------------------------------- 75
             ++  L                                                     
Sbjct: 97  VENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIH 156

Query: 76  --GNKHTLTIKNVQSTDFGNYSCVADNNLG 103
             G K  L + NV     GNY+C A     
Sbjct: 157 FSGVKDRLIVMNVAEKHRGNYTCHASYTYL 186

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 49.0 bits (116), Expect = 3e-08
 Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 5/65 (7%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
           + WY+D   +     +      +     L + NV     GNY+C A       +  +   
Sbjct: 141 LQWYKDCKPLLLD--NIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRV 195

Query: 64  VSVSD 68
           +    
Sbjct: 196 IEFIT 200

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 45.9 bits (108), Expect = 3e-07
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 11/74 (14%)

Query: 5   SWYQDTFLIEPS----VSDRRLMETRGNKH------TLTIKNVQSTDF-GNYSCVADNNL 53
            W  +  +I+        D   +E   NK        L I  ++S  +   ++C A N  
Sbjct: 242 YWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTH 301

Query: 54  GRAKKYMELSVSVS 67
           G    Y++L   V+
Sbjct: 302 GIDAAYIQLIYPVT 315

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 44.3 bits (104), Expect = 1e-06
 Identities = 10/49 (20%), Positives = 17/49 (34%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
             VS  +      +K  L     +  D G+Y CV  N+    +  +   
Sbjct: 47  TPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAK 95

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 73  ETRGNKHTLTIKNVQSTDF-GNYSCVADNNLGRAKKYMEL 111
                   L I  ++S  +   ++C A N  G    Y++L
Sbjct: 271 RRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 65.7 bits (160), Expect = 5e-14
 Identities = 22/142 (15%), Positives = 36/142 (25%), Gaps = 39/142 (27%)

Query: 6   WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELSV 64
           W+ +   +  S   +     R    TLT+ NV   D   Y C   N++   +   + L V
Sbjct: 500 WWVNGQSLPVSPRLQLSNGNR----TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDV 555

Query: 65  SV---------SDRRLME--------------------TRGNK-----HTLTIKNVQSTD 90
                       D   +                                 L I  +   +
Sbjct: 556 LYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQVLFIAKITPNN 615

Query: 91  FGNYSCVADNNLGRAKKYMELS 112
            G Y+C   N        +  S
Sbjct: 616 NGTYACFVSNLATGRNNSIVKS 637

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 65.0 bits (158), Expect = 8e-14
 Identities = 25/138 (18%), Positives = 43/138 (31%), Gaps = 39/138 (28%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELS 63
            W+ +    +      RL  + GN+ TLT+ NV   D  +Y C   N +   +   + L+
Sbjct: 143 LWWVNN---QSLPVSPRLQLSNGNR-TLTLFNVTRNDTASYKCETQNPVSARRSDSVILN 198

Query: 64  VSVSDRRLMETRGNK----------------------------------HTLTIKNVQST 89
           V         +  N                                     L I N+   
Sbjct: 199 VLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVN 258

Query: 90  DFGNYSCVADNNLGRAKK 107
           + G+Y+C A N+     +
Sbjct: 259 NSGSYTCQAHNSDTGLNR 276

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 62.3 bits (151), Expect = 8e-13
 Identities = 22/147 (14%), Positives = 42/147 (28%), Gaps = 58/147 (39%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           SW+ +    + +               L I N+   + G+Y+C A N+     +    ++
Sbjct: 236 SWFVNGTFQQST-------------QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTI 282

Query: 65  SVS----------------------------------------DRRL-----METRGNKH 79
           +V                                         ++ L     ++   +  
Sbjct: 283 TVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNR 342

Query: 80  TLTIKNVQSTDFGNYSCVADNNLGRAK 106
           TLT+ +V   D G Y C   N L    
Sbjct: 343 TLTLLSVTRNDVGPYECGIQNELSVDH 369

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 61.1 bits (148), Expect = 2e-12
 Identities = 23/123 (18%), Positives = 37/123 (30%), Gaps = 47/123 (38%)

Query: 30  HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVS---------------------- 67
             L I N+   + G Y+C A+N+     +    +++VS                      
Sbjct: 426 QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAV 485

Query: 68  ------------------------DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG 103
                                     RL  + GN  TLT+ NV   D   Y C   N++ 
Sbjct: 486 AFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGN-RTLTLFNVTRNDARAYVCGIQNSVS 544

Query: 104 RAK 106
             +
Sbjct: 545 ANR 547

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 60.0 bits (145), Expect = 5e-12
 Identities = 23/143 (16%), Positives = 40/143 (27%), Gaps = 39/143 (27%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELS 63
            W+ +   +  S      ++   +  TLT+ +V   D G Y C   N L       + L+
Sbjct: 321 LWWVNNQSLPVS----PRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILN 376

Query: 64  VSV---------SDRRLME--------------------TRGNK-----HTLTIKNVQST 89
           V           S                                      L I N+   
Sbjct: 377 VLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEK 436

Query: 90  DFGNYSCVADNNLGRAKKYMELS 112
           + G Y+C A+N+     +    +
Sbjct: 437 NSGLYTCQANNSASGHSRTTVKT 459

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 55.3 bits (133), Expect = 2e-10
 Identities = 22/138 (15%), Positives = 38/138 (27%), Gaps = 51/138 (36%)

Query: 15  PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL------------ 62
           P+ S R ++       +L I+N+   D G Y+     +    ++                
Sbjct: 59  PAYSGREIIYPNA---SLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSI 115

Query: 63  ----------------------------------SVSVSDRRLMETRGNKHTLTIKNVQS 88
                                             S+ VS R  +       TLT+ NV  
Sbjct: 116 SSNNSKPVEDKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGN--RTLTLFNVTR 173

Query: 89  TDFGNYSCVADNNLGRAK 106
            D  +Y C   N +   +
Sbjct: 174 NDTASYKCETQNPVSARR 191

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 50.7 bits (121), Expect = 9e-09
 Identities = 9/37 (24%), Positives = 15/37 (40%)

Query: 31  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVS 67
            L I  +   + G Y+C   N        +  S++VS
Sbjct: 605 VLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITVS 641

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 39.6 bits (92), Expect = 8e-05
 Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 107
           S R ++       +L I+N+   D G Y+     +    ++
Sbjct: 62  SGREIIYPNA---SLLIQNIIQNDTGFYTLHVIKSDLVNEE 99

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 64.9 bits (158), Expect = 5e-14
 Identities = 19/154 (12%), Positives = 32/154 (20%), Gaps = 53/154 (34%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
           + +Y++    +    +            LTI     +  G Y C            + ++
Sbjct: 115 VLYYRNGKAFKFFHWNS----------NLTILKTNISHNGTYHCSGMGKHRYTSAGISVT 164

Query: 64  VSV-------------------------------------------SDRRLMETRGNKHT 80
           V                                                + +  R     
Sbjct: 165 VKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSE 224

Query: 81  LTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114
             I   +  D G Y C A    G   K     EL
Sbjct: 225 YQILTARREDSGLYWCEAATEDGNVLKRSPELEL 258

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 51.8 bits (124), Expect = 3e-09
 Identities = 17/133 (12%), Positives = 29/133 (21%), Gaps = 46/133 (34%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME--- 61
            W+ +    + S              +  I +    D G Y C    +       +E   
Sbjct: 35  QWFLNGTATQTSTP------------SYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHR 82

Query: 62  --LSVSVS-----------------------------DRRLMETRGNKHTLTIKNVQSTD 90
             L + VS                             + +  +       LTI     + 
Sbjct: 83  GWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISH 142

Query: 91  FGNYSCVADNNLG 103
            G Y C       
Sbjct: 143 NGTYHCSGMGKHR 155

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 46.8 bits (111), Expect = 1e-07
 Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 1/49 (2%)

Query: 19  DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY-MELSVSV 66
             + +  R       I   +  D G Y C A    G   K   EL + V
Sbjct: 212 GSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQV 260

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 65.5 bits (159), Expect = 6e-14
 Identities = 15/150 (10%), Positives = 36/150 (24%), Gaps = 43/150 (28%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKH----TLTIKNVQSTDFGNYSCVADNNLGRA---- 56
           +W  +   +E          +            + +V   D G Y+C +  +  ++    
Sbjct: 261 TWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVT 320

Query: 57  ----------KKYMELSVSVSDRRLMETRG-------------------------NKHTL 81
                         +  +   +      R                          N +++
Sbjct: 321 IVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSI 380

Query: 82  TIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
           +         G Y   A+N+  +  K   L
Sbjct: 381 SKFCNHKHQPGEYIFHAENDDAQFTKMFTL 410

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 55.1 bits (132), Expect = 2e-10
 Identities = 14/140 (10%), Positives = 26/140 (18%), Gaps = 42/140 (30%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W                        ++ I  +  T  G Y     +          +S+
Sbjct: 81  LWVFKH---SSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSI 137

Query: 65  SVS------------------------------------DRRLMETRGNKHTLTIKN--- 85
             +                                    D +    +     +  K    
Sbjct: 138 RNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKV 197

Query: 86  VQSTDFGNYSCVADNNLGRA 105
           +      +  C A N LGR 
Sbjct: 198 LHELFGTDIRCCARNELGRE 217

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 52.0 bits (124), Expect = 3e-09
 Identities = 8/60 (13%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           +W       +    +++ ++   N ++++         G Y   A+N+  +  K   L++
Sbjct: 359 TWTFSR---KSFPCEQKGLD---NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 46.6 bits (110), Expect = 3e-07
 Identities = 17/151 (11%), Positives = 33/151 (21%), Gaps = 56/151 (37%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL-- 62
            W       E    +   +  +       +  +  TD     C A N LGR    +    
Sbjct: 172 EWVLCDSQGESCKEESPAVVKKE---EKVLHELFGTD---IRCCARNELGRECTRLFTID 225

Query: 63  ------------------------------------------SVSVSDRRLMETRGNKH- 79
                                                     ++   +   M T      
Sbjct: 226 LNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRT 285

Query: 80  -----TLTIKNVQSTDFGNYSCVADNNLGRA 105
                   + +V   D G Y+C +  +  ++
Sbjct: 286 MIRILFAFVSSVARNDTGYYTCSSSKHPSQS 316

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 45.4 bits (107), Expect = 6e-07
 Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 63  SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           S++      ++ RG   ++ I  +  T  G Y     +          +S
Sbjct: 88  SLNCQPHFDLQNRGV-VSMVILKMTETQAGEYLLFIQSEATNYTILFTVS 136

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 61.6 bits (150), Expect = 6e-14
 Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 2/53 (3%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 57
           W      +  S   R     +G K+ L ++    +D G           +A 
Sbjct: 42 MWTVGGKTVGSS--SRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLTSKAS 92

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 55.1 bits (133), Expect = 2e-11
 Identities = 9/43 (20%), Positives = 15/43 (34%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
           V  S R     +G K+ L ++    +D G           +A 
Sbjct: 50  VGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLTSKAS 92

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 65.1 bits (158), Expect = 7e-14
 Identities = 22/152 (14%), Positives = 36/152 (23%), Gaps = 52/152 (34%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           +W+++         +   M  +     L +      D G Y C   N     K  +EL V
Sbjct: 58  TWHKNDSARTVPGEEETRMWAQD--GALWLLPALQEDSGTYVCTTRNASYCDKMSIELRV 115

Query: 65  SVS-------------------------------------------DRRLMETRGNKH-- 79
             +                                           D  L++    K   
Sbjct: 116 FENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLS 175

Query: 80  -----TLTIKNVQSTDFGNYSCVADNNLGRAK 106
                 L + +V   D G Y CV        +
Sbjct: 176 VRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQ 207

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 53.2 bits (127), Expect = 1e-09
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            WY+D+ L++    + + +  RG    L + +V   D G Y CV        +  +  S+
Sbjct: 158 QWYKDSLLLDKD--NEKFLSVRGT-THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSI 214

Query: 65  SVS 67
            + 
Sbjct: 215 ELR 217

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 10/50 (20%), Positives = 14/50 (28%)

Query: 63  SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           + +V              L +      D G Y C   N     K  +EL 
Sbjct: 65  ARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELR 114

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 43.5 bits (102), Expect = 2e-06
 Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 11/68 (16%)

Query: 6   WYQDTFLIEPSVSDRRLMETRGNK----------HTLTIKNVQSTDFG-NYSCVADNNLG 54
           W  +   IE +    R+ E    +            L    V   D   ++ CV  N L 
Sbjct: 264 WTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLS 323

Query: 55  RAKKYMEL 62
                  +
Sbjct: 324 FQTLRTTV 331

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 42.0 bits (98), Expect = 9e-06
 Identities = 12/68 (17%), Positives = 18/68 (26%), Gaps = 4/68 (5%)

Query: 50  DNNLGRAKKYMELSVSVSDRRLMETRGNK---HTLTIKNVQSTDFG-NYSCVADNNLGRA 105
            N+      Y    V+   R+             L    V   D   ++ CV  N L   
Sbjct: 266 ANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQ 325

Query: 106 KKYMELSE 113
                + E
Sbjct: 326 TLRTTVKE 333

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 63.4 bits (154), Expect = 9e-14
 Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 2/74 (2%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           +W  +   I  S  DR      G +  L I      D G Y     +     +K ++LS 
Sbjct: 36  NWSHNGSAIRYS--DRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 93

Query: 65  SVSDRRLMETRGNK 78
              D    E +  K
Sbjct: 94  QAYDEAYAEFQRLK 107

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 58.3 bits (141), Expect = 8e-12
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           SW ++   +  +     L    G     TI  V + D G Y  V  N  G       +SV
Sbjct: 150 SWLKNEKALAQT-DHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208

Query: 65  SVSD 68
            + +
Sbjct: 209 FIPE 212

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 52.6 bits (126), Expect = 1e-09
 Identities = 12/49 (24%), Positives = 18/49 (36%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           +  SDR      G +  L I      D G Y     +     +K ++LS
Sbjct: 44  IRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLS 92

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 48.7 bits (116), Expect = 3e-08
 Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 64  VSVSDR-RLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           ++ +D   L    G     TI  V + D G Y  V  N  G       +S
Sbjct: 158 LAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 60.8 bits (148), Expect = 1e-13
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           W +    I  S  ++  + T G +HTLT++ V   D G+Y+ +A    G +K   +L V
Sbjct: 40 RWQRGGSDISAS--NKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKV 93

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 52.3 bits (126), Expect = 2e-10
 Identities = 12/40 (30%), Positives = 24/40 (60%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
           S++  + T G +HTLT++ V   D G+Y+ +A ++  +  
Sbjct: 51  SNKYGLATEGTRHTLTVREVGPADQGSYAVIAGSSKVKFD 90

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 63.1 bits (153), Expect = 1e-13
 Identities = 23/168 (13%), Positives = 40/168 (23%), Gaps = 60/168 (35%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKH------TLTIKNVQSTDFGNYSCVADNNLGRA-- 56
            W  D       V     +              +T K+V   D G Y+C+     G +  
Sbjct: 37  EWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYG 96

Query: 57  KKYMELSVSV---------------------------------------------SDRRL 71
           +  ++L V V                                             + +  
Sbjct: 97  EVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKST 156

Query: 72  METRGNKH-------TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
                + +        L    + ++D G YSC A N  G       + 
Sbjct: 157 RAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 204

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 58.4 bits (141), Expect = 6e-12
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRG-----NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY 59
           +W++D  ++  +    R               L    + ++D G YSC A N  G     
Sbjct: 141 TWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTS 200

Query: 60  MELSVSVSD 68
             + +   +
Sbjct: 201 NAVRMEAVE 209

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 64.2 bits (156), Expect = 1e-13
 Identities = 20/160 (12%), Positives = 33/160 (20%), Gaps = 56/160 (35%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN-LGRAKKYMELS 63
           S  ++       +       +        I+  +  D   Y C    N        + L 
Sbjct: 123 SLMREG--GRQVLRKTVYFFS--PWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLK 178

Query: 64  VSV---------------------------------------------------SDRRLM 72
           V+                                                    +     
Sbjct: 179 VNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQD 238

Query: 73  ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
                   L++  V   D G YSCVA N++G     M   
Sbjct: 239 NYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQ 278

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 60.3 bits (146), Expect = 3e-12
 Identities = 18/144 (12%), Positives = 30/144 (20%), Gaps = 51/144 (35%)

Query: 2   GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 61
           G + W          +S    ++      TLT +N    + G Y C    +       + 
Sbjct: 30  GSVEWDGP-------ISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIH 82

Query: 62  LSVSV---------------------------------------SDRRLMETRG-----N 77
           L V                                            R +  +       
Sbjct: 83  LYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSP 142

Query: 78  KHTLTIKNVQSTDFGNYSCVADNN 101
                I+  +  D   Y C    N
Sbjct: 143 WRGFIIRKAKVLDSNTYVCKTMVN 166

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 58.0 bits (140), Expect = 2e-11
 Identities = 15/62 (24%), Positives = 23/62 (37%)

Query: 6   WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVS 65
             +    +E  ++             L++  V   D G YSCVA N++G     M   V 
Sbjct: 221 LKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVV 280

Query: 66  VS 67
            S
Sbjct: 281 ES 282

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 43.0 bits (101), Expect = 3e-06
 Identities = 8/41 (19%), Positives = 13/41 (31%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 107
           S    ++      TLT +N    + G Y C    +      
Sbjct: 39  SPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGST 79

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 60.9 bits (148), Expect = 1e-13
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 6  WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 56
          WY++   + PS   R  +   G  H L I +V+  D G+Y+ V D      
Sbjct: 41 WYKNGVEVRPS--KRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSL 89

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 53.5 bits (129), Expect = 9e-11
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
           S R  +   G  H L I +V+  D G+Y+ V D      
Sbjct: 51  SKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSL 89

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 64.3 bits (156), Expect = 2e-13
 Identities = 19/151 (12%), Positives = 41/151 (27%), Gaps = 43/151 (28%)

Query: 4   MSWYQDTFLIEPS----VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA--- 56
           ++W  +   +E      +S      T        + +V   D G Y+C +  +  ++   
Sbjct: 260 LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALV 319

Query: 57  -------------KKYME--------LSVSVS------------DRRLMETR---GNKHT 80
                         +  E         SV                +     +    N ++
Sbjct: 320 TIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYS 379

Query: 81  LTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
           ++         G Y   A+N+  +  K   L
Sbjct: 380 ISKFCNHKHQPGEYIFHAENDDAQFTKMFTL 410

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 58.9 bits (142), Expect = 1e-11
 Identities = 16/141 (11%), Positives = 25/141 (17%), Gaps = 42/141 (29%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W                        ++ I  +  T  G Y     +          +S+
Sbjct: 81  LWVFKH---SSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSI 137

Query: 65  S-----VSDRRLMETRGNKHTLT----------------------------------IKN 85
                    R       N+  L                                    K 
Sbjct: 138 RNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKV 197

Query: 86  VQSTDFGNYSCVADNNLGRAK 106
           +      +  C A N LGR  
Sbjct: 198 LHELFGTDIRCCARNELGREC 218

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 56.6 bits (136), Expect = 8e-11
 Identities = 17/155 (10%), Positives = 43/155 (27%), Gaps = 53/155 (34%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           +W       +    +++ ++   N ++++         G Y   A+N+  +  K   L++
Sbjct: 359 TWTFSR---KSFPCEQKGLD---NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412

Query: 65  SV------------------------------------SDRRLMETRGNKHT-------- 80
                                                     + E   N+          
Sbjct: 413 RRKPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQW 472

Query: 81  ---LTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
               T+   ++       C A N+LG + + + L+
Sbjct: 473 VSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLN 507

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 48.9 bits (116), Expect = 3e-08
 Identities = 17/151 (11%), Positives = 31/151 (20%), Gaps = 56/151 (37%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK------ 58
            W       E    +   +  +        K +      +  C A N LGR         
Sbjct: 172 EWVLCDSQGESCKEESPAVVKKE------EKVLHELFGTDIRCCARNELGRECTRLFTID 225

Query: 59  -YMELSVSVSDRRLME---------------------TRGNK------------------ 78
                  ++    L                          NK                  
Sbjct: 226 LNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRT 285

Query: 79  ----HTLTIKNVQSTDFGNYSCVADNNLGRA 105
                   + +V   D G Y+C +  +  ++
Sbjct: 286 MIRILFAFVSSVARNDTGYYTCSSSKHPSQS 316

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 43.1 bits (101), Expect = 4e-06
 Identities = 4/45 (8%), Positives = 9/45 (20%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
                        ++ I  +  T  G Y     +          +
Sbjct: 91  CQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTV 135

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 7/36 (19%), Positives = 15/36 (41%)

Query: 32  LTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVS 67
            T+   ++       C A N+LG + + + L+    
Sbjct: 476 STLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGP 511

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 60.5 bits (147), Expect = 2e-13
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           SW  D   + P  S  +++      H+L I+ V S D G Y+C+A N  G+    +EL V
Sbjct: 42  SWQLDGKPVRPD-SAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVV 100

Query: 65  SVSDRR 70
           +  +  
Sbjct: 101 AAKESG 106

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 48.5 bits (116), Expect = 8e-09
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
           S  +++      H+L I+ V S D G Y+C+A N  G+    +EL
Sbjct: 54  SAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLEL 98

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 60.4 bits (147), Expect = 2e-13
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           +W +   ++  S   R  + T   K T  I +VQ++D GNYS V +N+ G+ +    L++
Sbjct: 47  TWLRKGQVLSTS--ARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 52.7 bits (127), Expect = 1e-10
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
           +S S R  + T   K T  I +VQ++D GNYS V +N+ G+ 
Sbjct: 55  LSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQ 96

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 62.8 bits (152), Expect = 2e-13
 Identities = 23/127 (18%), Positives = 37/127 (29%), Gaps = 47/127 (37%)

Query: 31  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV-------------------------- 64
           ++ + N+Q +D G Y C      G A K   L+V                          
Sbjct: 85  SINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCE 144

Query: 65  -------------------SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
                              ++    L E       +++KN  S   G YSC   N +G  
Sbjct: 145 PKEGSLPLQFEWQKLSDSQTMPTPWLAEMTS--PVISVKNASSEYSGTYSCTVQNRVGSD 202

Query: 106 KKYMELS 112
           +  + L 
Sbjct: 203 QCMLRLD 209

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 50.8 bits (121), Expect = 5e-09
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W + +            M +      +++KN  S   G YSC   N +G  +  + L V
Sbjct: 155 EWQKLSDSQTMPTPWLAEMTS----PVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 210

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 62.5 bits (152), Expect = 2e-13
 Identities = 30/154 (19%), Positives = 49/154 (31%), Gaps = 56/154 (36%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQST-DFGNYSCVADNNLGRAK-KYMEL 62
            W ++   +  + S   ++E  G    L I+ V++  D   Y CVA+N +G A      L
Sbjct: 39  VWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATL 98

Query: 63  SVSV---------------------------------------------------SDRRL 71
           ++                                                     S+ R 
Sbjct: 99  TIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY 158

Query: 72  METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
               G    L I+N +  D G Y CVA+N++G  
Sbjct: 159 SLKDG---FLQIENSREEDQGKYECVAENSMGTE 189

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 50.9 bits (122), Expect = 4e-09
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELS 63
            W ++   ++ S  + R     G    L I+N +  D G Y CVA+N++G    K   L 
Sbjct: 143 YWIKNQTKVDMS--NPRYSLKDG---FLQIENSREEDQGKYECVAENSMGTEHSKATNLY 197

Query: 64  VSV 66
           V V
Sbjct: 198 VKV 200

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 39.4 bits (92), Expect = 6e-05
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 60  MELSVSVSDRRLMETRGNKHTLTIKNVQST-DFGNYSCVADNNLGRAK 106
            ++S + S   ++E  G    L I+ V++  D   Y CVA+N +G A 
Sbjct: 45  KKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAV 92

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 60.4 bits (147), Expect = 2e-13
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
          +W +    I+ S  +   +E   N   LTI   +    G Y+ + +N LG  +  + L+V
Sbjct: 40 TWMKFRKQIQES--EHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTV 97

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 52.7 bits (127), Expect = 2e-10
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
           +  S+   +E   N   LTI   +    G Y+ + +N LG  +  + L
Sbjct: 48  IQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNL 95

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 62.1 bits (151), Expect = 3e-13
 Identities = 16/60 (26%), Positives = 25/60 (41%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           SW++D  L+  S      +    +   L +      DFGNY+C A N +G+      L  
Sbjct: 51  SWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQ 110

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 54.1 bits (130), Expect = 3e-10
 Identities = 13/56 (23%), Positives = 21/56 (37%)

Query: 60  MELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
             L  S      +    +   L +      DFGNY+C A N +G+      L + +
Sbjct: 57  QLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQAD 112

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 60.2 bits (146), Expect = 3e-13
 Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 6/64 (9%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKH----TLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60
           W  +   +  S      +E           L        + GNY+ +A N LG A + +
Sbjct: 38 HWLHNGQPLRES--KIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTI 95

Query: 61 ELSV 64
              
Sbjct: 96 NGHF 99

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 52.1 bits (125), Expect = 4e-10
 Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 4/50 (8%)

Query: 67  SDRRLMETRGNKH----TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           S    +E           L        + GNY+ +A N LG A + +   
Sbjct: 49  SKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 98

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 61.6 bits (149), Expect = 3e-13
 Identities = 19/142 (13%), Positives = 30/142 (21%), Gaps = 49/142 (34%)

Query: 19  DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG------------------------ 54
              L E          K      +G YSCV                              
Sbjct: 38  GVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINE 97

Query: 55  ------------------------RAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQ-ST 89
                                      +   L      R  + +   +  L I+N+    
Sbjct: 98  GETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEA 157

Query: 90  DFGNYSCVADNNLGRAKKYMEL 111
           D G Y C   ++ G  +  + L
Sbjct: 158 DPGQYRCNGTSSKGSDQAIITL 179

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 53.9 bits (129), Expect = 2e-10
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 5   SWYQDT----FLIEPSVSDRRLMETRGNKHTLTIKNVQ-STDFGNYSCVADNNLGRAKKY 59
           +WY+ T      +      R  + +   +  L I+N+    D G Y C   ++ G  +  
Sbjct: 117 AWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAI 176

Query: 60  MELSV 64
           + L V
Sbjct: 177 ITLRV 181

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 61.6 bits (149), Expect = 4e-13
 Identities = 19/151 (12%), Positives = 30/151 (19%), Gaps = 48/151 (31%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
             + D   IE        +    N   L +     +  GNY C          K   LSV
Sbjct: 42  RMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV 101

Query: 65  SV------------------------------------------------SDRRLMETRG 76
                                                             +   + E  G
Sbjct: 102 VKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG 161

Query: 77  NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 107
           +       ++        +CV  N+   A  
Sbjct: 162 SLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 192

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 43.9 bits (103), Expect = 1e-06
 Identities = 9/41 (21%), Positives = 12/41 (29%)

Query: 72  METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           +    N   L +     +  GNY C          K   LS
Sbjct: 60  IHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLS 100

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 41.6 bits (97), Expect = 9e-06
 Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 5   SW-YQDTFLIEPSVSDRRLMETR-GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 62
            W   +     P+ ++  +M+ + G+       ++        +CV  N+   A   + +
Sbjct: 137 QWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG-VYV 195

Query: 63  SVSVS 67
           S  +S
Sbjct: 196 SGYLS 200

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 59.3 bits (144), Expect = 4e-13
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
          +W         +     L++ + +  ++   + +  D GNY     N LG  +   E+ V
Sbjct: 35 TWTVGDSGAALA--PELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 51.9 bits (125), Expect = 2e-10
 Identities = 9/48 (18%), Positives = 22/48 (45%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
            +++   L++ + +  ++   + +  D GNY     N LG  +   E+
Sbjct: 43  AALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 61.5 bits (149), Expect = 4e-13
 Identities = 18/147 (12%), Positives = 37/147 (25%), Gaps = 46/147 (31%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKH-------TLTIKNVQSTDFGNYSCVADNNLGRAK 57
            W +D  ++E + S +  +    ++         L I ++Q +D G Y C+         
Sbjct: 36  HWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFV 95

Query: 58  KYM-ELSVSVS--------------------------------------DRRLMETRGNK 78
                + +                                            L    G+ 
Sbjct: 96  SQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHG 155

Query: 79  HTLTIKNVQSTDFGNYSCVADNNLGRA 105
              ++         ++SC A N  G  
Sbjct: 156 PQRSLHVPGLNKTSSFSCEAHNAKGVT 182

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 41.8 bits (98), Expect = 7e-06
 Identities = 7/27 (25%), Positives = 11/27 (40%)

Query: 80  TLTIKNVQSTDFGNYSCVADNNLGRAK 106
            L I ++Q +D G Y C+         
Sbjct: 69  QLRITSLQLSDTGQYQCLVFLGHQTFV 95

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 59.7 bits (145), Expect = 4e-13
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W ++  +++ +     L +    + TL IK+V   D G Y+  A N  G       L V
Sbjct: 48  FWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDV 107

Query: 65  SV 66
           + 
Sbjct: 108 TA 109

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 50.1 bits (120), Expect = 2e-09
 Identities = 12/46 (26%), Positives = 18/46 (39%)

Query: 60  MELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
             +  +     L +    + TL IK+V   D G Y+  A N  G  
Sbjct: 54  EMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVT 99

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 58.4 bits (142), Expect = 8e-13
 Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           WY++   IE S           N   L I++V   D  +    A N  G    +  L V
Sbjct: 38 EWYKNGVKIERS-DRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 47.3 bits (113), Expect = 2e-08
 Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 1/46 (2%)

Query: 60  MELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
           +++  S           N   L I++V   D  +    A N  G  
Sbjct: 44  VKIERS-DRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGET 88

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 62.1 bits (150), Expect = 9e-13
 Identities = 25/156 (16%), Positives = 46/156 (29%), Gaps = 52/156 (33%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNV-QSTDFGNYSCVADNNLGRAKKYMEL 62
             W         +V     + +      LT+ NV    +  N +C A+N++GRA+  +++
Sbjct: 190 AGWILTELEQSATVMKSGGLPSL----GLTLANVTSDLNRKNVTCWAENDVGRAEVSVQV 245

Query: 63  SVSVSDRRLMETRGNKH------------------------------------------- 79
           +VS      + T    H                                           
Sbjct: 246 NVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET 305

Query: 80  ----TLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
                L +      + GNY+ +A N  G+A   +  
Sbjct: 306 VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA 341

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 4e-08
 Identities = 9/66 (13%), Positives = 21/66 (31%), Gaps = 5/66 (7%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKH-----TLTIKNVQSTDFGNYSCVADNNLGRAKK 58
           + W  +  ++  +                    L +      + GNY+ +A N  G+A  
Sbjct: 278 LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA 337

Query: 59  YMELSV 64
            +  + 
Sbjct: 338 SIMAAF 343

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 58.2 bits (141), Expect = 1e-12
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           WY++   I PS   + + E +G +  L I N Q TD   Y   A +         EL V
Sbjct: 40 KWYKNGQEIRPS--TKYIFEHKGCQRILFINNCQMTDDSEYYVTAGDEKCST----ELFV 93

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 50.1 bits (120), Expect = 2e-09
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
           S + + E +G +  L I N Q TD   Y   A +     +
Sbjct: 51  STKYIFEHKGCQRILFINNCQMTDDSEYYVTAGDEKCSTE 90

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 61.1 bits (148), Expect = 1e-12
 Identities = 21/136 (15%), Positives = 26/136 (19%), Gaps = 52/136 (38%)

Query: 28  NKHTLTIKNVQSTDFGNYSCVADNN-LGRAKKYMELSVSV-------------------- 66
             H  TI   +     +Y C A           + L V                      
Sbjct: 142 PWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRG 201

Query: 67  -------------------------------SDRRLMETRGNKHTLTIKNVQSTDFGNYS 95
                                                       TL +  V     GNYS
Sbjct: 202 EAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYS 261

Query: 96  CVADNNLGRAKKYMEL 111
           CVA N  G+    M  
Sbjct: 262 CVASNVQGKHSTSMFF 277

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 60.4 bits (146), Expect = 3e-12
 Identities = 16/128 (12%), Positives = 25/128 (19%), Gaps = 44/128 (34%)

Query: 18  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN 77
           S    + + G+   L+  N    + G Y C    +       + L V    R        
Sbjct: 39  SPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQE 98

Query: 78  --------------------------------------------KHTLTIKNVQSTDFGN 93
                                                        H  TI   +     +
Sbjct: 99  VVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQD 158

Query: 94  YSCVADNN 101
           Y C A   
Sbjct: 159 YQCSALMG 166

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 56.9 bits (137), Expect = 4e-11
 Identities = 14/61 (22%), Positives = 19/61 (31%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
           +    +   +                 TL +  V     GNYSCVA N  G+    M   
Sbjct: 219 VFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFR 278

Query: 64  V 64
           V
Sbjct: 279 V 279

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 44.6 bits (105), Expect = 1e-06
 Identities = 8/46 (17%), Positives = 15/46 (32%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           S    + + G+   L+  N    + G Y C    +       + L 
Sbjct: 39  SPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLY 84

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 61.3 bits (148), Expect = 1e-12
 Identities = 18/150 (12%), Positives = 38/150 (25%), Gaps = 41/150 (27%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
           +SW             R    T        +   +     + +C+ + ++ R K+ + L+
Sbjct: 168 VSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLN 227

Query: 64  V---------SVSDRRLME---------------------TRGNK-----------HTLT 82
           V                ++                     T  N                
Sbjct: 228 VQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFF 287

Query: 83  IKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
              +  +  G Y C A N +G     +E++
Sbjct: 288 KGPINYSLAGTYICEATNPIGTRSGQVEVN 317

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 45.9 bits (108), Expect = 4e-07
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 7/60 (11%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W      +   V  +       N+       +  +  G Y C A N +G     +E+++
Sbjct: 266 HWTTLNGSLPKGVEAQ-------NRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNI 318

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 42.8 bits (100), Expect = 5e-06
 Identities = 12/154 (7%), Positives = 34/154 (22%), Gaps = 54/154 (35%)

Query: 13  IEPSVSDR-RLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK------------- 58
           +     +R   +       T+ +  ++  D G Y C         ++             
Sbjct: 74  VLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTN 133

Query: 59  -------------------------------------YMELSVSVSDRRLMETRGNKH-- 79
                                                   L      + +    G     
Sbjct: 134 WIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVI 193

Query: 80  -TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
               +   +     + +C+ + ++ R K+ + L+
Sbjct: 194 SRYRLVPSREAHQQSLACIVNYHMDRFKESLTLN 227

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 57.7 bits (140), Expect = 2e-12
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            WY +   ++ S   +          TL I +  + D G Y  V  N  G A  Y  L V
Sbjct: 41  KWYHNGVELQES--SKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98

Query: 65  SVSD 68
           +  D
Sbjct: 99  TGGD 102

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 48.8 bits (117), Expect = 6e-09
 Identities = 11/39 (28%), Positives = 14/39 (35%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
           S +          TL I +  + D G Y  V  N  G A
Sbjct: 52  SSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEA 90

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 57.3 bits (139), Expect = 2e-12
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           W +D   I      +  +        L I    ++D G Y+C   N+ G      +L++
Sbjct: 39 IWTKDGKAITQG--GKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 48.8 bits (117), Expect = 4e-09
 Identities = 8/42 (19%), Positives = 16/42 (38%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
           ++   +  +        L I    ++D G Y+C   N+ G  
Sbjct: 47  ITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSV 88

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 57.3 bits (139), Expect = 2e-12
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
          SWY +   ++      +++ +    H+L  + V+++D G Y+CVA N  G A   ++L V
Sbjct: 38 SWYLNGRTVQSD-DLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 47.3 bits (113), Expect = 2e-08
 Identities = 13/46 (28%), Positives = 25/46 (54%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
              +++ +    H+L  + V+++D G Y+CVA N  G A   ++L 
Sbjct: 50  DLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 57.9 bits (140), Expect = 2e-12
 Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W +D   +  S     L++       L +  VQ  D G Y C  D+          ++V
Sbjct: 45  RWTKDGEEVVES--PALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESASF----TVTV 98

Query: 65  SVSDRRLMETR 75
           +    R++ + 
Sbjct: 99  TEPPVRIIYSG 109

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 50.1 bits (120), Expect = 2e-09
 Identities = 10/40 (25%), Positives = 14/40 (35%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
           S   L++       L +  VQ  D G Y C  D+      
Sbjct: 56  SPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESASFT 95

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 57.4 bits (139), Expect = 2e-12
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 57
          +WY+D   +  S   +  +E  G    L ++     + G YSC A       +
Sbjct: 43 TWYKDGKKLSSS--SKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLSFR 93

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 50.9 bits (122), Expect = 9e-10
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
           +S S +  +E  G    L ++     + G YSC A       +
Sbjct: 51  LSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLSFR 93

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 57.3 bits (139), Expect = 2e-12
 Identities = 14/52 (26%), Positives = 20/52 (38%)

Query: 6  WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 57
          W+++   I P    R  +   G KH L I+     D   YS +       AK
Sbjct: 40 WFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAK 91

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 50.8 bits (122), Expect = 8e-10
 Identities = 12/46 (26%), Positives = 16/46 (34%)

Query: 61  ELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
           E+      R  +   G KH L I+     D   YS +       AK
Sbjct: 46  EIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAK 91

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 59.6 bits (144), Expect = 3e-12
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKH------TLTIKNVQSTDFGNYSCVADNNLGRAKK 58
           SW++D   +  + + +       +         L    V + D G Y C A N  G A +
Sbjct: 138 SWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMR 197

Query: 59  YMELSVSVSD 68
                +   +
Sbjct: 198 SEAAHMDAVE 207

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 54.2 bits (130), Expect = 3e-10
 Identities = 21/168 (12%), Positives = 39/168 (23%), Gaps = 61/168 (36%)

Query: 5   SWY-QDTFLIEPSVSDRRLMETRGNKH-----TLTIKNVQSTDFGNYSCVADNNLGR--A 56
            W             + ++     ++       +T  +V   D G Y+C+     G+   
Sbjct: 34  EWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYG 93

Query: 57  KKYMELSVSVS--------------------------------------DRRLMETRGNK 78
           +  + L+V V                                          ++     K
Sbjct: 94  EVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKK 153

Query: 79  HTLTI---------------KNVQSTDFGNYSCVADNNLGRAKKYMEL 111
               +                 V + D G Y C A N  G A +    
Sbjct: 154 TRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAA 201

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 57.1 bits (138), Expect = 3e-12
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 7/65 (10%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKH-----TLTIKNVQSTDFGNYSCVADNNLGRAKKY 59
           W+ +  ++  S       +     H      L + N    + G+Y+ +A N  G+ +K 
Sbjct: 34 QWFYNGAILNES--KYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ 91

Query: 60 MELSV 64
          +    
Sbjct: 92 ISAHF 96

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 50.1 bits (120), Expect = 2e-09
 Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 64  VSVSDRRLMETRGNKH-----TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
           ++ S     +     H      L + N    + G+Y+ +A N  G+ +K +    + 
Sbjct: 42  LNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 56.9 bits (138), Expect = 3e-12
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
          +WY     +E S  ++  +        L +K++   D G Y C   N+ G    Y EL V
Sbjct: 35 TWYFGVRQLENS--EKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 47.7 bits (114), Expect = 1e-08
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           S++  +        L +K++   D G Y C   N+ G    Y EL 
Sbjct: 46  SEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELF 91

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 56.9 bits (138), Expect = 3e-12
 Identities = 15/59 (25%), Positives = 18/59 (30%), Gaps = 6/59 (10%)

Query: 6  WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
          W      +  S      +   G KH L + N Q    G  S  A N    A     L V
Sbjct: 38 WKLKGQPLAAS--PDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSAAN----LKV 90

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 51.1 bits (123), Expect = 5e-10
 Identities = 12/43 (27%), Positives = 16/43 (37%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
           ++ S    +   G KH L + N Q    G  S  A N    A 
Sbjct: 45  LAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSAAN 87

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 56.9 bits (138), Expect = 4e-12
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 6  WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 57
          W +D   I  S   +  +   G    L I+     D G Y+C  + +   A 
Sbjct: 41 WLKDRKAIRKS--QKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKSTAS 90

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 51.5 bits (124), Expect = 4e-10
 Identities = 9/43 (20%), Positives = 16/43 (37%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
           +  S +  +   G    L I+     D G Y+C  + +   A 
Sbjct: 48  IRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKSTAS 90

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 56.6 bits (137), Expect = 5e-12
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 57
          +WY+D   +E S  +  +++  G KH L +   +  D G + C  +       
Sbjct: 42 TWYKDGQKVEES--ELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSAFFG 92

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 50.5 bits (121), Expect = 1e-09
 Identities = 8/40 (20%), Positives = 16/40 (40%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
           S+  +++  G KH L +   +  D G + C  +       
Sbjct: 53  SELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSAFFG 92

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 56.6 bits (137), Expect = 6e-12
 Identities = 15/66 (22%), Positives = 22/66 (33%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W++D   I P      +        +L        D GNY+ +A N  GR      L V
Sbjct: 41  YWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMV 100

Query: 65  SVSDRR 70
              +  
Sbjct: 101 QAVNSG 106

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 46.6 bits (111), Expect = 4e-08
 Identities = 11/49 (22%), Positives = 17/49 (34%)

Query: 57  KKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
           K   ++S       +        +L        D GNY+ +A N  GR 
Sbjct: 44  KDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRI 92

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 59.2 bits (143), Expect = 7e-12
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
          SW +D    E S   R  +E++GNK  +T K++   D G YSC   +  G A  Y+    
Sbjct: 35 SWSKDYVSTEDS--PRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEE 92

Query: 65 SVS 67
           + 
Sbjct: 93 ELK 95

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 57.3 bits (138), Expect = 4e-11
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            WY+D   I     ++   +      TL I      D G Y  +  ++ G+ K  ++L  
Sbjct: 255 VWYKDEREISVD--EKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 56.5 bits (136), Expect = 7e-11
 Identities = 9/80 (11%), Positives = 24/80 (30%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           ++  +   I      +  ++       + ++ +Q  D G Y+    +        + L  
Sbjct: 141 NYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVG 200

Query: 65  SVSDRRLMETRGNKHTLTIK 84
            V  +   E    +     K
Sbjct: 201 DVFKKLQKEAEFQRQEWIRK 220

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 53.8 bits (129), Expect = 6e-10
 Identities = 17/47 (36%), Positives = 25/47 (53%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113
           S R  +E++GNK  +T K++   D G YSC   +  G A  Y+   E
Sbjct: 46  SPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEE 92

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 49.2 bits (117), Expect = 3e-08
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           +SV ++   +      TL I      D G Y  +  ++ G+ K  ++L 
Sbjct: 263 ISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 309

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 45.8 bits (108), Expect = 5e-07
 Identities = 6/45 (13%), Positives = 14/45 (31%), Gaps = 2/45 (4%)

Query: 64  VSVSDRRLMETRGNK--HTLTIKNVQSTDFGNYSCVADNNLGRAK 106
           +    +  M    N     + ++ +Q  D G Y+    +      
Sbjct: 149 IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNH 193

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 56.2 bits (136), Expect = 7e-12
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 6  WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
          W ++   ++ S  DR  +  +G  H L I N  + D G+Y    D          ++ V
Sbjct: 39 WTKNGLPVQES--DRLKVVQKGRIHKLVIANALTEDEGDYVFAPDA--YNVTLPAKVHV 93

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 49.6 bits (119), Expect = 3e-09
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN 100
           V  SDR  +  +G  H L I N  + D G+Y    D 
Sbjct: 46  VQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDA 82

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 56.1 bits (136), Expect = 7e-12
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
          SW ++   + P    R   E  G    L I   +  D G Y+C A N  G  +    L V
Sbjct: 38 SWLRNRQPVRPD-QRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 49.6 bits (119), Expect = 3e-09
 Identities = 12/46 (26%), Positives = 15/46 (32%), Gaps = 1/46 (2%)

Query: 60  MELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
             +      R   E  G    L I   +  D G Y+C A N  G  
Sbjct: 44  QPVRPD-QRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGAR 88

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 59.0 bits (142), Expect = 8e-12
 Identities = 13/151 (8%), Positives = 35/151 (23%), Gaps = 43/151 (28%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGN-KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
           +W+ D   +  +      +           +      D  N +C  ++      + + ++
Sbjct: 151 TWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVN 210

Query: 64  VSV-----------SDRRLME---------------------TRGNK----------HTL 81
           ++V            +   +                      +                L
Sbjct: 211 LTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQL 270

Query: 82  TIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
            I+ V         C   N LG  +  + + 
Sbjct: 271 LIRPVDKPINTTLICNVTNALGARQAELTVQ 301

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 47.4 bits (112), Expect = 1e-07
 Identities = 8/35 (22%), Positives = 12/35 (34%)

Query: 30  HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
             L I+ V         C   N LG  +  + + V
Sbjct: 268 AQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 40.1 bits (93), Expect = 4e-05
 Identities = 18/139 (12%), Positives = 29/139 (20%), Gaps = 50/139 (35%)

Query: 16  SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN-LGRAKKYMELSVSV-------- 66
                RL     N  +L +  ++  D GNY+C+      G     + L V          
Sbjct: 66  EFVAARLGAELRN-ASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEV 124

Query: 67  -----------------------------SDRRLMETRGNKH-----------TLTIKNV 86
                                        SD   M                     +   
Sbjct: 125 QKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPS 184

Query: 87  QSTDFGNYSCVADNNLGRA 105
              D  N +C  ++     
Sbjct: 185 SQVDGKNVTCKVEHESFEK 203

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 56.2 bits (136), Expect = 8e-12
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 6   WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           W ++   I+ S   + + E+ G K TLTI      D   Y CV            EL V
Sbjct: 49  WLKNGQEIQMS-GSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCST----ELFV 102

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 48.9 bits (117), Expect = 5e-09
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 57  KKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
           K   E+ +S   + + E+ G K TLTI      D   Y CV        +
Sbjct: 51  KNGQEIQMS-GSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTE 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 55.5 bits (134), Expect = 1e-11
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 4  MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
          M W ++    +         + R    +L +++V  +D GNY+CV +N  G       L 
Sbjct: 40 MRWLKNGKEFKQE-HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98

Query: 64 V 64
          V
Sbjct: 99 V 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 47.1 bits (112), Expect = 2e-08
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
                 + R    +L +++V  +D GNY+CV +N  G       L
Sbjct: 53  HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 97

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 57.6 bits (139), Expect = 1e-11
 Identities = 27/155 (17%), Positives = 48/155 (30%), Gaps = 54/155 (34%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGN--KHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYME 61
            W++D   +  +      ++ +        T++  +  D G Y CVA N +G+A  ++  
Sbjct: 42  EWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHAS 101

Query: 62  LSVSVS---------------------------------------DRRLMETRGNK---- 78
           L ++V                                           L + +       
Sbjct: 102 LQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGAS 161

Query: 79  --------HTLTIKNVQSTDFGNYSCVADNNLGRA 105
                     L I NV+  D GNY C+A N +G  
Sbjct: 162 SRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTR 196

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 50.6 bits (121), Expect = 6e-09
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 5   SWYQDTFLIEPSVSDRRLMETR---GNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYM 60
            W +D   ++   +      +R    +   L I NV+  D GNY C+A N +G  +  Y 
Sbjct: 142 IWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYA 201

Query: 61  ELSVSV 66
           +L V V
Sbjct: 202 KLIVQV 207

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
           S R   +        T++  +  D G Y CVA N +G+A 
Sbjct: 57  SHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAV 96

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 56.1 bits (135), Expect = 1e-11
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 5   SWYQDTFLIEPSVSDRRLMET----RGNKHTLTIKNVQSTDFG-NYSCVADNNLGRAKKY 59
           +W     ++E   S R  +ET     G   TLTI N+   DF   Y+C A N+ G   + 
Sbjct: 47  AWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEI 106

Query: 60  MELSVSVSD 68
           + L    S+
Sbjct: 107 IRLKEQGSE 115

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 45.7 bits (108), Expect = 1e-07
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 57  KKYMELSVSVSDRRLMET----RGNKHTLTIKNVQSTDFG-NYSCVADNNLGRAKKYMEL 111
            K   L    S R  +ET     G   TLTI N+   DF   Y+C A N+ G   + + L
Sbjct: 50  WKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRL 109

Query: 112 SE 113
            E
Sbjct: 110 KE 111

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 55.1 bits (133), Expect = 2e-11
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 6/60 (10%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           W +    +      R  ++  G +  L I ++   D G YSC+       A     L+V
Sbjct: 39 EWKKGPETLRDG--GRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQERTSA----TLTV 92

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 48.5 bits (116), Expect = 6e-09
 Identities = 10/40 (25%), Positives = 16/40 (40%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
             R  ++  G +  L I ++   D G YSC+       A 
Sbjct: 50  GGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQERTSAT 89

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 57.2 bits (138), Expect = 2e-11
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
           M W ++    +         + R    +L +++V  +D GNY+CV +N  G       L 
Sbjct: 51  MRWLKNGKEFKQEHRIGG-YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 109

Query: 64  VSVSDR 69
           V    R
Sbjct: 110 VVERSR 115

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 48.4 bits (115), Expect = 3e-08
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 64  VSVSDR-RLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
                R    + R    +L +++V  +D GNY+CV +N  G       L 
Sbjct: 60  FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 109

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 47.6 bits (113), Expect = 9e-08
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            +  D       +    +  +  N   L + NV   D G Y C   N +G+A +   L+V
Sbjct: 162 KYGPDGLPYLKVLKHSGINSS--NAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 76  GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
            N   L + NV   D G Y C   N +G+A +   L+
Sbjct: 182 SNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLT 218

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 55.1 bits (133), Expect = 3e-11
 Identities = 7/65 (10%), Positives = 19/65 (29%), Gaps = 5/65 (7%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W +    ++     R  + T        ++    +D G Y         +      + +
Sbjct: 57  VWTKGGAPLDT---SRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDT--ATIRI 111

Query: 65  SVSDR 69
            V ++
Sbjct: 112 RVVEK 116

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 48.2 bits (115), Expect = 1e-08
 Identities = 5/40 (12%), Positives = 11/40 (27%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
           + R  + T        ++    +D G Y         +  
Sbjct: 67  TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDT 106

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 56.8 bits (137), Expect = 3e-11
 Identities = 25/156 (16%), Positives = 42/156 (26%), Gaps = 56/156 (35%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQS-TDFGNYSCVADNNLGRAKKYMELS 63
            W +    +        +    G+   L I+ +++  D   Y CVA NN+G       L+
Sbjct: 39  VWNKKGKKVSNQ-RFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLT 97

Query: 64  VSVS-------------------------------------------DRRLMETRGNKHT 80
           V                                              D   ++T  N   
Sbjct: 98  VLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGR 157

Query: 81  LTI-----------KNVQSTDFGNYSCVADNNLGRA 105
           +             +  + +D G Y CVA N+ G  
Sbjct: 158 IKQLRSESIGALQIEQSEESDQGKYECVATNSAGTR 193

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 55.6 bits (134), Expect = 7e-11
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 5   SWYQDTFLIEPSVSDRRLMETR-GNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMEL 62
           +W++D   ++ S ++ R+ + R  +   L I+  + +D G Y CVA N+ G        L
Sbjct: 141 TWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANL 200

Query: 63  SVSVS 67
            V  +
Sbjct: 201 YVRGT 205

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 42.9 bits (101), Expect = 3e-06
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 64  VSVSDRRLMETR-GNKHTLTIKNVQS-TDFGNYSCVADNNLGRAKKYMELS 112
           VS     ++E   G+   L I+ +++  D   Y CVA NN+G       L+
Sbjct: 47  VSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLT 97

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 56.9 bits (137), Expect = 4e-11
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
           +SW ++             ++ R  + +L +++V  +D GNY+CV +N  G  ++   L 
Sbjct: 47  ISWLKNGREFRGE-HRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD 105

Query: 64  VSVS 67
           V   
Sbjct: 106 VLER 109

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 48.4 bits (115), Expect = 4e-08
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
                ++ R  + +L +++V  +D GNY+CV +N  G  ++   L 
Sbjct: 60  HRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD 105

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 17/50 (34%), Positives = 23/50 (46%)

Query: 15  PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            +V    + E+      L + NV   D G Y C A N +G A+K   LSV
Sbjct: 167 VTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSV 216

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           V+V    + E+      L + NV   D G Y C A N +G A+K   LS
Sbjct: 167 VTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLS 215

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 54.3 bits (131), Expect = 4e-11
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W++D   +        +++       LTI+ V+  D G Y+C A + LG AK      +
Sbjct: 43  MWFKDNETLVED--SGIVLKDGN--RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 98

Query: 65  SVSDRR 70
             +  +
Sbjct: 99  EGAQEK 104

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 45.0 bits (107), Expect = 1e-07
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           +      +++       LTI+ V+  D G Y+C A + LG AK      
Sbjct: 51  LVEDSGIVLKDGN--RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 57.0 bits (137), Expect = 4e-11
 Identities = 11/69 (15%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 4   MSWY---QDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60
             W    +++  +   V+D  L      +  L I + +  D G Y+C    ++   +   
Sbjct: 213 FEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEK 272

Query: 61  ELSVSVSDR 69
            ++++V + 
Sbjct: 273 AINITVVES 281

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 47.0 bits (111), Expect = 1e-07
 Identities = 11/56 (19%), Positives = 22/56 (39%)

Query: 57  KKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           K+   L   V+D  L      +  L I + +  D G Y+C    ++   +    ++
Sbjct: 220 KESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN 275

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 45.8 bits (108), Expect = 4e-07
 Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 9/99 (9%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM-ELS 63
            W + +      ++  +          LT+ N+   D G Y C  +++ G        L 
Sbjct: 29  VWERMSQEPPQEMAKAQDGTFSS---VLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLY 85

Query: 64  VSVSDRR--LMETRGNKHTLTIKNVQSTDFGNYSCVADN 100
           + V D     +     +  + +  +         C   +
Sbjct: 86  IFVPDPTVGFLPNDAEELFIFLTEITEITI---PCRVTD 121

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 3/62 (4%)

Query: 46  SCVADNNLGRAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
           +C     +   +   E    ++  +          LT+ N+   D G Y C  +++ G  
Sbjct: 21  TCSGSAPVVWERMSQEPPQEMAKAQDGTFSS---VLTLTNLTGLDTGEYFCTHNDSRGLE 77

Query: 106 KK 107
             
Sbjct: 78  TD 79

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 54.0 bits (130), Expect = 5e-11
 Identities = 14/36 (38%), Positives = 17/36 (47%)

Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV 66
           LTI+NVQ +D G Y C   N     +    L V V
Sbjct: 63 ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 49.0 bits (117), Expect = 4e-09
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 80  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
            LTI+NVQ +D G Y C   N     +    L 
Sbjct: 63  ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 56.7 bits (136), Expect = 5e-11
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKH-----TLTIKNVQSTDFGNYSCVADNNLGRAKK 58
             W +     +     +     RG+ +     TLTI + +  D G + C A+N  G A  
Sbjct: 221 SMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANV 280

Query: 59  YMELSV 64
              L V
Sbjct: 281 TTTLKV 286

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 49.7 bits (118), Expect = 1e-08
 Identities = 14/58 (24%), Positives = 22/58 (37%)

Query: 54  GRAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
               +++      S  R       + TLTI + +  D G + C A+N  G A     L
Sbjct: 227 NPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTL 284

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 44.0 bits (103), Expect = 2e-06
 Identities = 22/140 (15%), Positives = 37/140 (26%), Gaps = 55/140 (39%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W   T+  E              K+    +  ++T  G Y+C   N L  +   + + V
Sbjct: 41  RWTFKTYFNEMV---------ENKKNEWIQEKAEATRTGTYTCSNSNGLTSS---IYVFV 88

Query: 65  SVSDR------------------------------RLMETRG------------NKHTLT 82
               +                               L+E  G             K  +T
Sbjct: 89  RDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGIT 148

Query: 83  IKNVQ-STDFGNYSCVADNN 101
           IKNV+ +       C A  +
Sbjct: 149 IKNVKRAYHRLCVRCAAQRD 168

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 37.0 bits (85), Expect = 5e-04
 Identities = 7/33 (21%), Positives = 13/33 (39%)

Query: 73  ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
                K+    +  ++T  G Y+C   N L  +
Sbjct: 51  MVENKKNEWIQEKAEATRTGTYTCSNSNGLTSS 83

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 53.9 bits (130), Expect = 6e-11
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 57
          +W +    +  S   +      G    LTI  ++  D   Y+C       RA+
Sbjct: 40 TWRKGLLELRAS--GKHQPSQEGLTLRLTISALEKADSDTYTCDIGQAQSRAQ 90

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 47.7 bits (114), Expect = 1e-08
 Identities = 10/40 (25%), Positives = 15/40 (37%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
           S +      G    LTI  ++  D   Y+C       RA+
Sbjct: 51  SGKHQPSQEGLTLRLTISALEKADSDTYTCDIGQAQSRAQ 90

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 56.2 bits (135), Expect = 1e-10
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
           +SW ++             ++ R  + +L +++V  +D GNY+CV +N  G  ++   L 
Sbjct: 155 ISWLKNGREFRGEHRIGG-IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD 213

Query: 64  V 64
           V
Sbjct: 214 V 214

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 49.2 bits (117), Expect = 3e-08
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 25  TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLME 73
           T      L++ NV   D G Y+C+A N++G +     L V  ++  L+E
Sbjct: 286 TDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELVE 334

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 47.3 bits (112), Expect = 1e-07
 Identities = 12/41 (29%), Positives = 24/41 (58%)

Query: 72  METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           ++ R  + +L +++V  +D GNY+CV +N  G  ++   L 
Sbjct: 173 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD 213

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 46.1 bits (109), Expect = 3e-07
 Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 6/87 (6%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W +D   + PS  +R L+        L + N    D G YSC           +     
Sbjct: 42  VWVKDGTGLVPS--ERVLVGP----QRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVT 95

Query: 65  SVSDRRLMETRGNKHTLTIKNVQSTDF 91
                   E   ++   T  +  +  +
Sbjct: 96  DAPSSGDDEDGEDEAEDTGVDTGAPYW 122

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 42.7 bits (100), Expect = 5e-06
 Identities = 9/46 (19%), Positives = 13/46 (28%), Gaps = 3/46 (6%)

Query: 66  VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
           V   R++        L + N    D G YSC           +   
Sbjct: 51  VPSERVLVGPQ---RLQVLNASHEDSGAYSCRQRLTQRVLCHFSVR 93

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 42.3 bits (99), Expect = 7e-06
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 74  TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           T      L++ NV   D G Y+C+A N++G +     L 
Sbjct: 286 TDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 54.1 bits (130), Expect = 1e-10
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W++D   ++ S    ++        +LTI  V   D   Y+C A N+LG A    EL V
Sbjct: 74  MWFKDDNPVKES-RHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132

Query: 65  SVSDRR 70
               + 
Sbjct: 133 ETMGKE 138

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 64  VSVSDR-RLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
           V  S   ++        +LTI  V   D   Y+C A N+LG A
Sbjct: 82  VKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEA 124

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 55.6 bits (133), Expect = 1e-10
 Identities = 25/151 (16%), Positives = 34/151 (22%), Gaps = 52/151 (34%)

Query: 5   SWY---QDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 61
            WY   QD  L EP             K  L  +     D GNY+C+  N    +K    
Sbjct: 51  IWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFP 110

Query: 62  LSVSVSD-------------------------------------------------RRLM 72
           L V   D                                                 +   
Sbjct: 111 LEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFN 170

Query: 73  ETRGNKHTLTIKNVQSTDFGNYSCVADNNLG 103
                   L+      ++ GNY+CV      
Sbjct: 171 NVIPEGMNLSFLIALISNNGNYTCVVTYPEN 201

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 50.6 bits (120), Expect = 8e-09
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 9/75 (12%)

Query: 3   MMSWYQDTFLIEPSVSDRRLMETRGNK--------HTLTIKNVQSTDFG-NYSCVADNNL 53
            + W  D    +    D  + E+  +           L+IK V S D   +Y C A +  
Sbjct: 261 EVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAK 320

Query: 54  GRAKKYMELSVSVSD 68
           G   K  ++   V  
Sbjct: 321 GEVAKAAKVKQKVPA 335

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 43.3 bits (101), Expect = 4e-06
 Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 11/99 (11%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL----GRAKKYM 60
           +WY   + I+                 L+      ++ GNY+CV             + +
Sbjct: 158 TWYMGCYKIQNF------NNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTL 211

Query: 61  ELSVSVSDRRLM-ETRGNKHTLTIKNVQSTDFGNYSCVA 98
            + V  S +  +     + +   +   +  +     C  
Sbjct: 212 TVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTV 250

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 42.2 bits (98), Expect = 8e-06
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 54  GRAKKYMELSVSVSDRRLMETRGNK---HTLTIKNVQSTDFG-NYSCVADNNLGRAKKYM 109
           G+    + + V++++        ++     L+IK V S D   +Y C A +  G   K  
Sbjct: 268 GKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAA 327

Query: 110 ELSE 113
           ++ +
Sbjct: 328 KVKQ 331

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 10/36 (27%), Positives = 14/36 (38%)

Query: 77  NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
            K  L  +     D GNY+C+  N    +K    L 
Sbjct: 77  EKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLE 112

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 52.8 bits (127), Expect = 2e-10
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 5/60 (8%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W+ D   +  +     +    G  H LT++ +   D G     A +    A     L V
Sbjct: 46  HWFLDKTPLHAN-ELNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGDQRASAA----LRV 100

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 46.6 bits (111), Expect = 4e-08
 Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 64  VSVSDRRLMETR-GNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
           +  ++   ++ + G  H LT++ +   D G     A +    A 
Sbjct: 54  LHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGDQRASAA 97

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 55.2 bits (133), Expect = 2e-10
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
           ++W++D   ++ S   + +    GN + LTI  V+  D G Y+  A N+ G  ++ + L+
Sbjct: 514 VTWHKDDRELKQS--VKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571

Query: 64  VS 65
           V+
Sbjct: 572 VT 573

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 46.0 bits (109), Expect = 4e-07
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
           +  S + +    GN + LTI  V+  D G Y+  A N+ G  ++ + L
Sbjct: 523 LKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 570

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 52.5 bits (126), Expect = 3e-10
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           W +D  L+    S  + +E       L I+  +  D G Y+C+A    G A     + V
Sbjct: 41 LWRKDGVLVSTQDSRIKQLEN----GVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEV 96

Query: 65 SV 66
            
Sbjct: 97 QE 98

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 42.8 bits (101), Expect = 1e-06
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
           VS  D R ++   N   L I+  +  D G Y+C+A    G A
Sbjct: 49  VSTQDSR-IKQLEN-GVLQIRYAKLGDTGRYTCIASTPSGEA 88

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 51.9 bits (125), Expect = 3e-10
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           W     ++ P   D+  +   G    L ++N++  D G YSC   +    A     L+V
Sbjct: 40 KWCYGNNVLRPG--DKYSLRQEGAMLELVVRNLRPQDSGRYSCSFGDQTTSA----TLTV 93

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 45.4 bits (108), Expect = 1e-07
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
            D+  +   G    L ++N++  D G YSC   +    A 
Sbjct: 51  GDKYSLRQEGAMLELVVRNLRPQDSGRYSCSFGDQTTSAT 90

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 51.2 bits (123), Expect = 5e-10
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 6  WYQDTFLIEPS--VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 57
          W ++   +        R   +  G +H L   +V   D G Y  + +     A+
Sbjct: 41 WMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGGQCEAE 94

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 45.4 bits (108), Expect = 1e-07
 Identities = 10/44 (22%), Positives = 16/44 (36%)

Query: 63  SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
             S   R   +  G +H L   +V   D G Y  + +     A+
Sbjct: 51  EDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGGQCEAE 94

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 53.3 bits (128), Expect = 6e-10
 Identities = 30/151 (19%), Positives = 42/151 (27%), Gaps = 49/151 (32%)

Query: 5   SWYQDTFLIEPSVSD---RRLMETRGNKHTLTIK--NVQSTDFGNYSCVADNNLGRAK-K 58
            WY+    +E    D    R++   G+   L I        D G Y CVA N LG A   
Sbjct: 42  EWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSH 101

Query: 59  YMELSVSVS---------------------------------------DRRLMETRG--- 76
              L V++                                           L +      
Sbjct: 102 DASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERIT 161

Query: 77  -NKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
                L I   + +D G Y CV  N +G  +
Sbjct: 162 IRGGKLMITYTRKSDAGKYVCVGTNMVGERE 192

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 51.7 bits (124), Expect = 2e-09
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELS 63
           SW +D   ++    +R  +        L I   + +D G Y CV  N +G  + +  EL+
Sbjct: 145 SWKKDGSPLDDK-DERITIRG----GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELT 199

Query: 64  VSV 66
           V  
Sbjct: 200 VLE 202

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 53.0 bits (127), Expect = 8e-10
 Identities = 9/80 (11%), Positives = 24/80 (30%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           ++  +   I      +  ++       + ++ +Q  D G Y+    +        + L  
Sbjct: 36  NYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVG 95

Query: 65  SVSDRRLMETRGNKHTLTIK 84
            V  +   E    +     K
Sbjct: 96  DVFKKLQKEAEFQRQEWIRK 115

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 51.9 bits (124), Expect = 2e-09
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            WY+D   I     ++   +      TL I      D G Y  +  ++ G+ K  ++L  
Sbjct: 150 VWYKDEREISVD--EKHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           +SV ++   +      TL I      D G Y  +  ++ G+ K  ++L 
Sbjct: 158 ISVDEKHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 204

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 43.8 bits (103), Expect = 1e-06
 Identities = 6/45 (13%), Positives = 14/45 (31%), Gaps = 2/45 (4%)

Query: 64  VSVSDRRLMETRGNK--HTLTIKNVQSTDFGNYSCVADNNLGRAK 106
           +    +  M    N     + ++ +Q  D G Y+    +      
Sbjct: 44  IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNH 88

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 50.5 bits (121), Expect = 1e-09
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
          SW ++ F   P    R  ++ +G   TL IKN++ +D G Y+CVA ++ G       L V
Sbjct: 41 SWLKEGFTF-PGRDPRATIQEQG---TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96

Query: 65 SVS 67
          + S
Sbjct: 97 TES 99

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 42.4 bits (100), Expect = 2e-06
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
                R  ++ +G   TL IKN++ +D G Y+CVA ++ G  
Sbjct: 50  PGRDPRATIQEQG---TLQIKNLRISDTGTYTCVATSSSGET 88

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 50.4 bits (120), Expect = 1e-09
 Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 7/68 (10%)

Query: 4   MSWYQDTFLIEPSVSDRRL-------METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 56
           + W++  ++   S   + L         ++     L I + Q    G+Y C         
Sbjct: 39  VKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFD 98

Query: 57  KKYMELSV 64
                L+V
Sbjct: 99  CSNFNLTV 106

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 44.2 bits (104), Expect = 3e-07
 Identities = 7/42 (16%), Positives = 13/42 (30%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
           + + D     ++     L I + Q    G+Y C         
Sbjct: 57  LQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFD 98

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 50.1 bits (120), Expect = 1e-09
 Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 11/62 (17%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           W +D   +                  L +  +   D G YSCVA ++    ++   +S+
Sbjct: 43 HWMKDGVPLPLP-----------PSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91

Query: 65 SV 66
          S+
Sbjct: 92 SI 93

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 44.7 bits (106), Expect = 1e-07
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 76  GNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
                L +  +   D G YSCVA ++    +
Sbjct: 54  PPSPVLILPEIGPQDQGTYSCVATHSSHGPQ 84

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 50.7 bits (121), Expect = 1e-09
 Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 5/66 (7%)

Query: 4  MSWYQDTFLIEPSVSDRRLMETRGNKHT-----LTIKNVQSTDFGNYSCVADNNLGRAKK 58
          + W  +  ++  +              T     L +      + GNY+ +A N  G+A  
Sbjct: 32 LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA 91

Query: 59 YMELSV 64
           +  + 
Sbjct: 92 SIMAAF 97

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 44.2 bits (104), Expect = 5e-07
 Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 5/60 (8%)

Query: 57  KKYMELSVSVSDRRLMETRGNKHT-----LTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
                L+ +              T     L +      + GNY+ +A N  G+A   +  
Sbjct: 36  FNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA 95

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 50.2 bits (120), Expect = 2e-09
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
          +W +D   +  S  +R  +        + +++    D G Y+CV  +  G    Y  ++V
Sbjct: 41 NWLRDGVQLVES--NRTRIT----GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

Query: 65 S 65
          S
Sbjct: 95 S 95

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 42.1 bits (99), Expect = 2e-06
 Identities = 9/39 (23%), Positives = 17/39 (43%)

Query: 74  TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           TR     + +++    D G Y+CV  +  G    Y  ++
Sbjct: 55  TRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 52.1 bits (124), Expect = 2e-09
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKH------TLTIKNVQSTDFGNYSCVADNNLGRAK 57
            +W   +   +      R ++T+          TLTI  V  +D G Y+C A + L   K
Sbjct: 139 FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK 198

Query: 58  KYMELSV 64
               + V
Sbjct: 199 NSTFVRV 205

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 46.7 bits (110), Expect = 1e-07
 Identities = 13/40 (32%), Positives = 18/40 (45%)

Query: 73  ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           E +    TLTI  V  +D G Y+C A + L   K    + 
Sbjct: 165 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 204

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.2 bits (125), Expect = 2e-09
 Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 3/61 (4%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
                   +    S+  +    G    L  K VQ  D G Y+C A          +EL V
Sbjct: 279 WVSPSNEQVLSQGSNGSVSVRNG---DLFFKKVQVEDGGVYTCYAMGETFNETLSVELKV 335

Query: 65  S 65
            
Sbjct: 336 Y 336

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 4e-07
 Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
           S+  +    G    L  K VQ  D G Y+C A          +EL
Sbjct: 292 SNGSVSVRNG---DLFFKKVQVEDGGVYTCYAMGETFNETLSVEL 333

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 50.7 bits (121), Expect = 3e-09
 Identities = 21/134 (15%), Positives = 31/134 (23%), Gaps = 46/134 (34%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA-----KKY 59
            W+ +  L E + S            +L I N +  D G Y C                 
Sbjct: 38  KWFHNGSLSEETNS------------SLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFS 85

Query: 60  MELSVSVS-----------------------------DRRLMETRGNKHTLTIKNVQSTD 90
             L +  S                             D   ++     H ++I N    D
Sbjct: 86  DWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVED 145

Query: 91  FGNYSCVADNNLGR 104
            G Y C        
Sbjct: 146 SGTYYCTGKVWQLD 159

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 43.3 bits (102), Expect = 2e-06
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 11/67 (16%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELS 63
            +Y+D   ++    +          H ++I N    D G Y C         + + + ++
Sbjct: 119 IYYKDGEALKYWYEN----------HNISITNATVEDSGTYYCTGKVWQLDYESEPLNIT 168

Query: 64  VSVSDRR 70
           V  + R 
Sbjct: 169 VIKAPRE 175

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 48.9 bits (117), Expect = 4e-09
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
          +W +D   +  S  +R  +        + +++    D G Y+CV  +  G    Y  ++V
Sbjct: 35 NWLRDGVQLAES--NRTRITGE----EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNV 88

Query: 65 S 65
          S
Sbjct: 89 S 89

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 43.5 bits (103), Expect = 4e-07
 Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 63  SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
            ++ S+R  +        + +++    D G Y+CV  +  G    Y  ++
Sbjct: 42  QLAESNRTRITGE----EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVN 87

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 48.9 bits (117), Expect = 5e-09
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 6   WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           W++    +     DR  +   G +  L I+ + + D G Y C+       A     L+V
Sbjct: 51  WWKGHETLRDG--DRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKERTSA----MLTV 103

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 44.3 bits (105), Expect = 4e-07
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
           +   DR  +   G +  L I+ + + D G Y C+       A 
Sbjct: 58  LRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKERTSAM 100

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 50.6 bits (120), Expect = 8e-09
 Identities = 25/152 (16%), Positives = 36/152 (23%), Gaps = 51/152 (33%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGN-YSCVADNNLGRAKKY---- 59
           +W +      P          R     L I N  S D    Y C      G   +     
Sbjct: 71  NWEKIGKTRRPL-------NRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRS 123

Query: 60  ------------MELSVSVS----------------------DRRLMETRGNKH-----T 80
                        EL                           + + +   G K+      
Sbjct: 124 HIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQN 183

Query: 81  LTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           L I N +  D G Y C    +  R K  + +S
Sbjct: 184 LIIHNPELEDSGRYDCYVHYDDVRIKNDIVVS 215

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 47.9 bits (113), Expect = 9e-08
 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
           ++WY++   +       +  +   +   L I N +  D G Y C    +  R K  + +S
Sbjct: 161 ITWYKNNQELIID--GTKYSQ---SGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVS 215

Query: 64  VSVS 67
               
Sbjct: 216 RCKI 219

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 44.8 bits (105), Expect = 1e-06
 Identities = 12/64 (18%), Positives = 18/64 (28%), Gaps = 4/64 (6%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNK---HTLTIKNVQSTDFGN-YSCVADNNLGRAKKYM 60
            W   +  I         + T        TL  +NV     GN Y+C   N         
Sbjct: 265 DWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTT 324

Query: 61  ELSV 64
            + +
Sbjct: 325 TVVL 328

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 39.8 bits (92), Expect = 5e-05
 Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 1/56 (1%)

Query: 57  KKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGN-YSCVADNNLGRAKKYMEL 111
              + L   V           + TL  +NV     GN Y+C   N          +
Sbjct: 271 GWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTV 326

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 49.7 bits (118), Expect = 1e-08
 Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 50/137 (36%)

Query: 15  PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG-RAKKYMEL----------- 62
            + S R ++ + G   +L  + +   D G Y+    +    R +  +             
Sbjct: 59  QAYSGREIIYSNG---SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFL 115

Query: 63  ---------------------------------SVSVSDRRLMETRGNKHTLTIKNVQST 89
                                            S+ +++R  M    N   L I  ++  
Sbjct: 116 QVTNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTER--MTLSQNNSILRIDPIKRE 173

Query: 90  DFGNYSCVADNNLGRAK 106
           D G Y C   N +   +
Sbjct: 174 DAGEYQCEISNPVSVRR 190

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELS 63
            W  ++  ++ +  +R  M    N   L I  ++  D G Y C   N +   +   ++L 
Sbjct: 142 QWLFNSQSLQLT--ER--MTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLD 197

Query: 64  VSV 66
           +  
Sbjct: 198 IIF 200

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 47.3 bits (113), Expect = 2e-08
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
          +W  +   I+ +   R   E       L I++    D G Y+C+A+N LG+      ++V
Sbjct: 44 TWLLNGQPIQYA---RSTCE--AGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 43.1 bits (102), Expect = 7e-07
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 72  METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
                    L I++    D G Y+C+A+N LG+ 
Sbjct: 57  STCEAGVAELHIQDALPEDHGTYTCLAENALGQV 90

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 48.3 bits (115), Expect = 2e-08
 Identities = 15/134 (11%), Positives = 27/134 (20%), Gaps = 46/134 (34%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-----KY 59
            W+ +  LI                         + D G Y+C                +
Sbjct: 38  QWFHNGNLIPTHTQ------------PSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLF 85

Query: 60  MELSVSVSDRRLME---------TRGNK--------------------HTLTIKNVQSTD 90
             L +        E         +  +K                     T +I     + 
Sbjct: 86  EWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSH 145

Query: 91  FGNYSCVADNNLGR 104
            G+Y C  +     
Sbjct: 146 SGDYHCTGNIGYTL 159

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 47.8 bits (113), Expect = 2e-08
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 4   MSW-YQDTFLIEPSVSDRRLMETRGNKH-----TLTIKNVQSTDFGNYSCVADNNLGRAK 57
            +W Y  +      + +R L    G++      TLTI  V  +D G Y+C A + L   K
Sbjct: 42  FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK 101

Query: 58  KYMELSV 64
               + V
Sbjct: 102 NSTFVRV 108

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 44.0 bits (103), Expect = 6e-07
 Identities = 13/51 (25%), Positives = 22/51 (43%)

Query: 62  LSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           ++  +  +   E +    TLTI  V  +D G Y+C A + L   K    + 
Sbjct: 57  VNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 107

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 47.3 bits (112), Expect = 4e-08
 Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 7/67 (10%)

Query: 5   SWYQDTFLIEPSVSDRRL-------METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 57
            W++  ++   S + + L         +R     + I   +    GNY C          
Sbjct: 43  KWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDS 102

Query: 58  KYMELSV 64
              +L V
Sbjct: 103 CSFDLEV 109

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 43.1 bits (101), Expect = 1e-06
 Identities = 6/43 (13%), Positives = 12/43 (27%)

Query: 63  SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
            + + +     +R     + I   +    GNY C         
Sbjct: 59  HLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFD 101

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 47.6 bits (113), Expect = 6e-08
 Identities = 14/134 (10%), Positives = 28/134 (20%), Gaps = 46/134 (34%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W+ +  LI                 +  I      D G Y C  + +       +E+ +
Sbjct: 41  QWFHNESLIS------------SQASSYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHI 88

Query: 65  ----------------SVS------------------DRRLMETRGNKHTLTIKNVQSTD 90
                            +                   + +  +   +     I      D
Sbjct: 89  GWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKD 148

Query: 91  FGNYSCVADNNLGR 104
            G+Y C        
Sbjct: 149 SGSYFCRGLVGSKN 162

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 38.7 bits (90), Expect = 8e-05
 Identities = 6/63 (9%), Positives = 18/63 (28%), Gaps = 11/63 (17%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           ++ Q+    +    +              I      D G+Y C              +++
Sbjct: 122 TYLQNGKDRKYFHHNS----------DFHIPKATLKDSGSYFCRGLVGSKNVSS-ETVNI 170

Query: 65  SVS 67
           +++
Sbjct: 171 TIT 173

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 47.3 bits (112), Expect = 7e-08
 Identities = 16/118 (13%), Positives = 29/118 (24%), Gaps = 41/118 (34%)

Query: 31  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL---------------------------- 62
              I +VQ  D G Y C+         KY+ +                            
Sbjct: 68  LFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQA 127

Query: 63  -------------SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 107
                        SV  +   +    G     ++  ++     N+SC+  N   +   
Sbjct: 128 RGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELT 185

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 38.9 bits (90), Expect = 9e-05
 Identities = 9/32 (28%), Positives = 13/32 (40%)

Query: 80  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
              I +VQ  D G Y C+         KY+ +
Sbjct: 68  LFHIPSVQVRDSGQYRCLVICGAAWDYKYLTV 99

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 47.2 bits (112), Expect = 8e-08
 Identities = 12/112 (10%), Positives = 30/112 (26%), Gaps = 30/112 (26%)

Query: 31  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDR--------------------- 69
           TL IK++++ D   Y     +  G+        + + +R                     
Sbjct: 67  TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMN 126

Query: 70  ---------RLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
                    +  +       +      ++    + C A N + +      +S
Sbjct: 127 GTDPELNLYQDGKHLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVS 178

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 47.7 bits (112), Expect = 1e-07
 Identities = 22/163 (13%), Positives = 48/163 (29%), Gaps = 59/163 (36%)

Query: 9   DTFLIEPSVSDRRLMETRGNKH---TLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL--- 62
            +  + P+ + R  ++ +G      ++ I  ++ +D G Y C A ++    KK  +L   
Sbjct: 161 SSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVL 220

Query: 63  -------------SVSV--------------------------------------SDRRL 71
                        SV+                                         R L
Sbjct: 221 KPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRIL 280

Query: 72  METRGNKH--TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           +  +      ++ I  ++  D G Y C A ++    +     +
Sbjct: 281 LNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQA 323

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 43.8 bits (102), Expect = 3e-06
 Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 6/69 (8%)

Query: 6   WYQDTFLIEPSVSDRR-----LMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60
           W        PS  +         +      +LT+  V   D G Y C          +  
Sbjct: 480 WNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQG-HFYGETA 538

Query: 61  ELSVSVSDR 69
            + V+V +R
Sbjct: 539 AVYVAVEER 547

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 41.5 bits (96), Expect = 1e-05
 Identities = 12/127 (9%), Positives = 25/127 (19%), Gaps = 54/127 (42%)

Query: 31  TLTIKNVQSTDFGNYSCVADNNLGRAKKYM------------------------ELSVSV 66
           T+ +  + S D G Y C+ + +                                ++    
Sbjct: 407 TVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHF 466

Query: 67  S----------------------------DRRLMETRGNKHTLT--IKNVQSTDFGNYSC 96
                                         +  +    N   ++  +  V   D G Y C
Sbjct: 467 PCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWC 526

Query: 97  VADNNLG 103
                  
Sbjct: 527 GVKQGHF 533

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 12/106 (11%), Positives = 28/106 (26%), Gaps = 6/106 (5%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKH--TLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 62
                          R L+  +      ++ I  ++  D G Y C A ++    +     
Sbjct: 264 VVNTLGKRAPAF-EGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQ 322

Query: 63  SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY 108
           +  +          +   +      S       C  +    ++ KY
Sbjct: 323 AWQLFVNEESTIPRSPTVVKGVAGSSVAV---LCPYNRKESKSIKY 365

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 43  GNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL 102
           G Y  +  ++ G         + +  +    T     ++ I  ++ +D G Y C A ++ 
Sbjct: 152 GLYPVLVIDSSGYVNPNYTGRIRLDIQG---TGQLLFSVVINQLRLSDAGQYLCQAGDDS 208

Query: 103 GRAKKYME 110
              KK  +
Sbjct: 209 NSNKKNAD 216

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 37.3 bits (85), Expect = 4e-04
 Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 4/56 (7%)

Query: 54  GRAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 109
           G  K   E  +S+ +           T+ +  + S D G Y C+ + +        
Sbjct: 385 GWVKAQYEGRLSLLEEP----GNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVE 436

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 47.5 bits (112), Expect = 1e-07
 Identities = 17/145 (11%), Positives = 33/145 (22%), Gaps = 56/145 (38%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK------- 57
           +W +D    E             N  TLT+ +  S + G+Y     +             
Sbjct: 39  TWTKDDQPHE------------NNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFL 86

Query: 58  ---------------------KYMELSVSVSD----------------RRLMETRGNKHT 80
                                  +EL  +V                   +  +       
Sbjct: 87  MEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQD 146

Query: 81  LTIKNVQSTDFGNYSCVADNNLGRA 105
           +TI+   +   G Y+         +
Sbjct: 147 ITIQEFTADKNGVYTVKVWGESEDS 171

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 41.7 bits (97), Expect = 1e-05
 Identities = 10/43 (23%), Positives = 18/43 (41%)

Query: 31  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLME 73
            L  ++    D   + CVA        + +E++ S S +  ME
Sbjct: 259 HLFKESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKCSME 301

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 40.6 bits (94), Expect = 3e-05
 Identities = 7/62 (11%), Positives = 16/62 (25%), Gaps = 13/62 (20%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           SW +   +I                  +TI+   +   G Y+         +       +
Sbjct: 133 SWSKGEDVI-------------DTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKI 179

Query: 65  SV 66
            +
Sbjct: 180 ML 181

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 47.2 bits (112), Expect = 1e-07
 Identities = 14/134 (10%), Positives = 26/134 (19%), Gaps = 46/134 (34%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG---------- 54
            W+ +  LI                 +  I      D G Y C    +            
Sbjct: 41  QWFHNESLIS------------SQASSYFIDAATVDDSGEYRCQTQLSTLSDPVQLEVHI 88

Query: 55  -------RAKKYME-LSVSVS----------------DRRLMETRGNKHTLTIKNVQSTD 90
                      + E   + +                 + +  +   +     I      D
Sbjct: 89  GWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKD 148

Query: 91  FGNYSCVADNNLGR 104
            G+Y C        
Sbjct: 149 SGSYFCRGLVGSKN 162

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 39.9 bits (93), Expect = 4e-05
 Identities = 6/63 (9%), Positives = 17/63 (26%), Gaps = 11/63 (17%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           ++ Q+    +    +              I      D G+Y C              + +
Sbjct: 122 TYLQNGKGRKYFHHNS----------DFYIPKATLKDSGSYFCRGLVGSKN-VSSETVQI 170

Query: 65  SVS 67
           +++
Sbjct: 171 TIT 173

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 47.4 bits (112), Expect = 1e-07
 Identities = 16/137 (11%), Positives = 34/137 (24%), Gaps = 38/137 (27%)

Query: 14  EPSVS-DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV------ 66
              V+ +    +  G +  L +K     +  ++SC A   +     +   +  +      
Sbjct: 125 RAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGP 184

Query: 67  --------SDRRLME---------TRGN--------------KHTLTIKNVQSTDFGNYS 95
                    +    E           GN                      V     G Y 
Sbjct: 185 RLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYL 244

Query: 96  CVADNNLGRAKKYMELS 112
           C A +  G   + + ++
Sbjct: 245 CRARSTQGEVTREVTVN 261

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 40.0 bits (93), Expect = 4e-05
 Identities = 7/35 (20%), Positives = 12/35 (34%)

Query: 30  HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
                  V     G Y C A +  G   + + ++V
Sbjct: 228 PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 262

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 45.8 bits (108), Expect = 2e-07
 Identities = 10/37 (27%), Positives = 14/37 (37%)

Query: 28  NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
              T++I  +   D G Y C A N+  R        V
Sbjct: 88  AASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 43.9 bits (103), Expect = 8e-07
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 77  NKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
              T++I  +   D G Y C A N+  R 
Sbjct: 88  AASTISIDTLVEEDTGTYECRASNDPDRN 116

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 5   SWYQD--TFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 62
            W     T L   S   R  +   G   TL   +V  +D G Y+C+  N  G +     L
Sbjct: 383 KWLLPNGTVLSHASRHPRISVLNDG---TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYL 439

Query: 63  SVSVS 67
           +VS +
Sbjct: 440 NVSTA 444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 80  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
           TL   +V  +D G Y+C+  N  G +     L
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYL 439

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 17/136 (12%), Positives = 36/136 (26%), Gaps = 38/136 (27%)

Query: 15  PSVS-DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV------- 66
             V+ +    +  G +  L +K     +  ++SC A   +     +   +  +       
Sbjct: 311 AKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPR 370

Query: 67  ---------------SDRRLM-ETRGN--------------KHTLTIKNVQSTDFGNYSC 96
                          S +  M +  GN                      V     G Y C
Sbjct: 371 LDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYLC 430

Query: 97  VADNNLGRAKKYMELS 112
            A +  G   + + ++
Sbjct: 431 RARSTQGEVTREVTVN 446

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 39.5 bits (91), Expect = 8e-05
 Identities = 7/35 (20%), Positives = 12/35 (34%)

Query: 30  HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
                  V     G Y C A +  G   + + ++V
Sbjct: 413 PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 447

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 11/97 (11%), Positives = 29/97 (29%), Gaps = 7/97 (7%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
              +    ++   +     E      T T+   +     N+SC  + +L      +  + 
Sbjct: 122 VLLRGEKELKREPAVGEPAEV-----TTTVLVRRDHHGANFSCRTELDLRPQGLELFENT 176

Query: 65  S--VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD 99
           S     +  +        ++ + ++    G   C  D
Sbjct: 177 SAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLD 213

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 44.6 bits (106), Expect = 2e-07
 Identities = 7/32 (21%), Positives = 9/32 (28%)

Query: 25 TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 56
          T   K    +  V     G Y C   N+    
Sbjct: 45 THETKKLYMVPYVDLEHQGTYWCHVYNDRDSQ 76

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 44.6 bits (106), Expect = 2e-07
 Identities = 7/32 (21%), Positives = 9/32 (28%)

Query: 74  TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
           T   K    +  V     G Y C   N+    
Sbjct: 45  THETKKLYMVPYVDLEHQGTYWCHVYNDRDSQ 76

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.5 bits (108), Expect = 6e-07
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 31  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVS 67
           TL   NV   D G Y+C+  N++G       L+V+ +
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGT 434

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.0 bits (99), Expect = 8e-06
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 80  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           TL   NV   D G Y+C+  N++G       L+
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLN 430

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 43.5 bits (102), Expect = 7e-07
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 7/67 (10%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKH------TLTIKNVQSTDFGNYSCVADNNLGRAK- 57
           +W  D   ++ +  +                  L ++NV+ T  G Y CV  N+ G +  
Sbjct: 45  AWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYS 104

Query: 58  KYMELSV 64
               L++
Sbjct: 105 VXAXLTI 111

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 39.7 bits (92), Expect = 2e-05
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 80  TLTIKNVQSTDFGNYSCVADNNLGRA 105
            L ++NV+ T  G Y CV  N+ G +
Sbjct: 77  ILRLRNVEFTSEGXYQCVISNHFGSS 102

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 44.5 bits (104), Expect = 1e-06
 Identities = 8/42 (19%), Positives = 20/42 (47%)

Query: 31  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLM 72
           ++ ++ V+ +D G Y+C        ++K + L V   + +  
Sbjct: 202 SIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRT 243

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 43.7 bits (102), Expect = 2e-06
 Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 5/85 (5%)

Query: 3   MMSWYQDTFLIEPSVSDRRLMETRGNKH--TLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60
           ++ +Y +  +      +R  +      +  +L +++VQ  D G Y+C             
Sbjct: 55  VLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKK 114

Query: 61  ELSVSV---SDRRLMETRGNKHTLT 82
            + + V     R L    G+   + 
Sbjct: 115 PVELWVLPEEPRDLRVRVGDTTQMR 139

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 7/33 (21%), Positives = 17/33 (51%)

Query: 80  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           ++ ++ V+ +D G Y+C        ++K + L 
Sbjct: 202 SIKLQTVKESDQGIYTCSIYVGKLESRKTIVLH 234

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 37.5 bits (86), Expect = 3e-04
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 69  RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
             + +T  N  +L +++VQ  D G Y+C         
Sbjct: 74  HLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESM 110

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 43.8 bits (103), Expect = 1e-06
 Identities = 19/143 (13%), Positives = 38/143 (26%), Gaps = 35/143 (24%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKH-----TLTIKNVQSTDFGNYSCVADNNLGRAKKY 59
            W + + L+       +     G         L IKN+   D G Y+    +  G     
Sbjct: 31  RWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILN 90

Query: 60  MELSV-------------------------SVSDRRLMETRGNK-----HTLTIKNVQST 89
             L +                           +D  L   +G +        T+    + 
Sbjct: 91  KALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTN 150

Query: 90  DFGNYSCVADNNLGRAKKYMELS 112
               + C A N + +  +   ++
Sbjct: 151 LRAPFKCKAVNRVSQESEMEVVN 173

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 42.8 bits (100), Expect = 3e-06
 Identities = 17/152 (11%), Positives = 37/152 (24%), Gaps = 56/152 (36%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
            SW      I+  ++ +  +   G   TLT+  V   +  +Y C A     + +K +++ 
Sbjct: 33  FSWRTQ---IDSPLNGK--VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVE 87

Query: 64  VSVSDRRLMET-------------------------------RGNK-------------- 78
           +    +                                    +G+               
Sbjct: 88  IYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRK 147

Query: 79  ------HTLTIKNVQSTDFGNYSCVADNNLGR 104
                   +T   V         C A  ++  
Sbjct: 148 SLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 36.3 bits (83), Expect = 7e-04
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 72  METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
           +   G   TLT+  V   +  +Y C A     + +K +++
Sbjct: 47  VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV 86

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 12/35 (34%), Positives = 15/35 (42%)

Query: 31  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVS 65
           TL ++  Q  D G Y C+A N  G       L V 
Sbjct: 442 TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.1 bits (94), Expect = 4e-05
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 80  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
           TL ++  Q  D G Y C+A N  G       L
Sbjct: 442 TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 42.2 bits (98), Expect = 6e-06
 Identities = 7/34 (20%), Positives = 11/34 (32%)

Query: 31  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            L I+  + TD G   C      G        ++
Sbjct: 214 NLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 40.3 bits (93), Expect = 3e-05
 Identities = 8/36 (22%), Positives = 12/36 (33%)

Query: 80  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
            L I+  + TD G   C      G        + L+
Sbjct: 214 NLVIRAAKITDAGRVWCELATGQGELDADRSSTILK 249

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 38.0 bits (87), Expect = 2e-04
 Identities = 13/62 (20%), Positives = 18/62 (29%)

Query: 43  GNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL 102
           GNY+   +          + S      R         TL + +V   D G Y C      
Sbjct: 54  GNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWS 113

Query: 103 GR 104
            R
Sbjct: 114 IR 115

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 37.6 bits (86), Expect = 3e-04
 Identities = 12/52 (23%), Positives = 16/52 (30%), Gaps = 5/52 (9%)

Query: 21  RLMETRGNKHTLTIKNVQSTDFGNYSCVADN-----NLGRAKKYMELSVSVS 67
           R         TL + +V   D G Y C           G   K + L V+  
Sbjct: 81  RASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH 132

>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R Length = 128

 Score = 40.3 bits (94), Expect = 1e-05
 Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 23/72 (31%)

Query: 4   MSWYQ---------DTFLI-----------EPSVSDRRLMETR---GNKHTLTIKNVQST 40
            SW            TF++           +  ++  +L        NK+ LT+      
Sbjct: 36  CSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKE 95

Query: 41  DFGNYSCVADNN 52
           + G Y C   +N
Sbjct: 96  NEGYYFCSVISN 107

>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R Length = 128

 Score = 39.1 bits (91), Expect = 4e-05
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 76  GNKHTLTIKNVQSTDFGNYSCVADNN 101
            NK+ LT+      + G Y C   +N
Sbjct: 82  NNKYVLTLNKFSKENEGYYFCSVISN 107

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 41.0 bits (95), Expect = 2e-05
 Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 5/65 (7%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNV-QSTDFGNYSCVADNNLGRAKK-YME 61
           + W  +   I     D        ++  L++K   +    G Y C    +       Y+ 
Sbjct: 143 ILWQHNDKNIGG---DEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLY 199

Query: 62  LSVSV 66
           L   V
Sbjct: 200 LRARV 204

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 36.8 bits (84), Expect = 6e-04
 Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 9/66 (13%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
          +W++D          + +     +K    + +      G Y C    N  +  +      
Sbjct: 33 TWFKD---------GKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMG 83

Query: 65 SVSDRR 70
          S  D +
Sbjct: 84 SADDAK 89

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 40.5 bits (94), Expect = 2e-05
 Identities = 11/76 (14%), Positives = 27/76 (35%)

Query: 4   MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
           + W  +     P+V    + +  G         ++ +     SC   ++L   +K   +S
Sbjct: 151 IQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASIS 210

Query: 64  VSVSDRRLMETRGNKH 79
           ++    R  +   + H
Sbjct: 211 IADPFFRSAQHHHHHH 226

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 39.5 bits (92), Expect = 5e-05
 Identities = 16/101 (15%), Positives = 26/101 (25%), Gaps = 29/101 (28%)

Query: 31  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV-----------------------SVS 67
            L I NV   D G+Y     +      K   + V                         +
Sbjct: 70  ALRIYNVSKEDRGDYYMRMLHETEDQWKI-TMEVYEMVSKPMIYWECSNATLTCEVLEGT 128

Query: 68  DRRLMETRGNK-----HTLTIKNVQSTDFGNYSCVADNNLG 103
           D  L   +G +        T+    +     + C A N + 
Sbjct: 129 DVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVS 169

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 39.5 bits (92), Expect = 5e-05
 Identities = 20/127 (15%), Positives = 37/127 (29%), Gaps = 28/127 (22%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM---- 60
                 F    S  +R  ++T     +LTI N+ S+D   Y   + N     K ++    
Sbjct: 37  ELENSEFRAFSSFKNRVYLDT--VSGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYVLE 94

Query: 61  -----ELSVSVSDRRL-----------------METRGNKHTLTIKNVQSTDFGNYSCVA 98
                 +    S+  L                  E   +    T+    +     + C A
Sbjct: 95  MVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKA 154

Query: 99  DNNLGRA 105
            N + + 
Sbjct: 155 VNRVSQE 161

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 38.3 bits (89), Expect = 6e-05
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 6/69 (8%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQS-----TDFGNYSCVADNNLGRAK-K 58
            WY+    +E    D R         +L    +        D G Y CVA N LG A   
Sbjct: 42  EWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSH 101

Query: 59  YMELSVSVS 67
              L V+ +
Sbjct: 102 DASLEVAAA 110

>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus} Length = 166

 Score = 38.8 bits (90), Expect = 8e-05
 Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 23/72 (31%)

Query: 4   MSWYQ---------DTFLI------EPSVSDRRLMETR--------GNKHTLTIKNVQST 40
            SW            TF++           D +L  ++         NK+ LT+      
Sbjct: 41  CSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKE 100

Query: 41  DFGNYSCVADNN 52
           + G Y C   +N
Sbjct: 101 NEGYYFCSVISN 112

>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus} Length = 166

 Score = 37.3 bits (86), Expect = 3e-04
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 76  GNKHTLTIKNVQSTDFGNYSCVADNN 101
            NK+ LT+      + G Y C   +N
Sbjct: 87  NNKYVLTLNKFSKENEGYYFCSVISN 112

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 37.9 bits (87), Expect = 9e-05
 Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 7/69 (10%)

Query: 3   MMSWYQDTFLIEPSVSDRRL-------METRGNKHTLTIKNVQSTDFGNYSCVADNNLGR 55
            + W++  +L   S S  R          +      L I  V   D G Y          
Sbjct: 46  TIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTC 105

Query: 56  AKKYMELSV 64
                 + V
Sbjct: 106 DSCGFNIDV 114

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 36.3 bits (83), Expect = 4e-04
 Identities = 11/61 (18%), Positives = 16/61 (26%), Gaps = 6/61 (9%)

Query: 58  KYMELSVSVSDRRLMETRGNKHT------LTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
           K++EL      R   +   N  +      L I  V   D G Y                +
Sbjct: 53  KWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNI 112

Query: 112 S 112
            
Sbjct: 113 D 113

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 9/51 (17%), Positives = 19/51 (37%)

Query: 6   WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 56
           W Q   + +  + + ++  +R    +  + N    D G Y C+     G  
Sbjct: 199 WLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVG 249

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 37.5 bits (86), Expect = 4e-04
 Identities = 7/39 (17%), Positives = 14/39 (35%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
            + ++  +R    +  + N    D G Y C+     G  
Sbjct: 211 KEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVG 249

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 38.6 bits (89), Expect = 1e-04
 Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 1/51 (1%)

Query: 17  VSDRRLMETRGNKHTLTIKNVQSTDFGNYSC-VADNNLGRAKKYMELSVSV 66
              R       ++  L +   Q  D  +Y C V     G A+    L+V  
Sbjct: 64  TRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFA 114

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 18/132 (13%), Positives = 34/132 (25%), Gaps = 48/132 (36%)

Query: 31  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRR------LMETRGNKHTLT-- 82
            L I +V+  D G Y C+  +  G   K + + V+    +      +++   ++H LT  
Sbjct: 81  ALQITDVKLQDAGVYRCMI-SYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQ 139

Query: 83  ---------------------------------------IKNVQSTDFGNYSCVADNNLG 103
                                                     + +T    + C       
Sbjct: 140 AEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDP 199

Query: 104 RAKKYMELSELE 115
                 EL   E
Sbjct: 200 EENHTAELVIPE 211

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 37.3 bits (86), Expect = 3e-04
 Identities = 5/62 (8%), Positives = 15/62 (24%), Gaps = 1/62 (1%)

Query: 4   MSWYQDTFLIEPSVSDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 62
           + W      +    +     +      +  +   + +T    + C             EL
Sbjct: 148 VIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAEL 207

Query: 63  SV 64
            +
Sbjct: 208 VI 209

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 31  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVS 67
            L I+NV+ +D G Y+C   ++  + +  +EL V   
Sbjct: 86  ALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDP 122

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126

 Score = 37.5 bits (87), Expect = 1e-04
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 31  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV 66
           ++ + N+Q +D G Y C      G A K + L V V
Sbjct: 90  SINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 125

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 15  PSVSDRR--LMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVS 67
           P + + +  L+    N+ ++T+ NV   D G Y C+  ++    K+ +++ V  +
Sbjct: 49  PVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKE-VKVIVLAT 102

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 35.7 bits (82), Expect = 7e-04
 Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 64  VSVSDRR--LMETRGNKHTLTIKNVQSTDFGNYSCVADNN 101
             + + +  L+    N+ ++T+ NV   D G Y C+  ++
Sbjct: 49  PVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSD 88

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 38.0 bits (87), Expect = 2e-04
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 6/57 (10%)

Query: 14 EPSVSDRRL------METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            SV  R L      +++   +  LT++N   +  G   CV        +  ++L V
Sbjct: 37 GASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 36.5 bits (84), Expect = 3e-04
 Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 8/56 (14%)

Query: 6  WYQDTFLIEPS--------VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL 53
          W+ +   ++ +         + R  +E +G +H L +  V+  D G     +   +
Sbjct: 40 WFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGV 95

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 37.5 bits (86), Expect = 3e-04
 Identities = 12/49 (24%), Positives = 15/49 (30%), Gaps = 5/49 (10%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL 53
           W           S        G    L +++VQ  D GNYSC      
Sbjct: 40 HWVLRKPAAGSHPS-----RWAGMGRRLLLRSVQLHDSGNYSCYRAGRP 83

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 36.8 bits (84), Expect = 6e-04
 Identities = 13/57 (22%), Positives = 19/57 (33%)

Query: 46  SCVADNNLGRAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL 102
           +C        A  +  L    +        G    L +++VQ  D GNYSC      
Sbjct: 27  TCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRP 83

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118

 Score = 36.3 bits (84), Expect = 4e-04
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 15  PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSC-VADNNLGRAKKYMELSVSV 66
                 RL     N  +L +  ++  D GNY+C       G     + L V  
Sbjct: 65  LEFVAARLGAELRN-ASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA 116

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 136

 Score = 36.0 bits (84), Expect = 5e-04
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 12/59 (20%)

Query: 2  GMMSWYQDT----FLI------EPSVSDRRLMETRGN--KHTLTIKNVQSTDFGNYSCV 48
          G + W++       LI                 T+ N    +++I N+   D G Y CV
Sbjct: 39 GPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCV 97

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 37.1 bits (84), Expect = 5e-04
 Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            W     +++       LM  +     L I N+   D G Y C+++    + K   ++  
Sbjct: 565 FWKFQNGVLKAESPKYGLMGRKN----LLIFNLSEGDSGVYQCLSEER-VKNKTVFQVVA 619

Query: 65  SVSDRRLMETR 75
                  +  +
Sbjct: 620 KHVLEVKVVPK 630

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens} Length = 253

 Score = 36.8 bits (85), Expect = 5e-04
 Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 15/67 (22%)

Query: 4  MSWYQDT------FLI---------EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCV 48
          MSWYQ        +L            S+     + TR     L ++    +      C 
Sbjct: 33 MSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGRTLYCT 92

Query: 49 ADNNLGR 55
          +  +   
Sbjct: 93 SSADHWT 99

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 36.5 bits (84), Expect = 7e-04
 Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 37/110 (33%)

Query: 28  NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL------------------------- 62
             ++L + N++  D G+Y                L                         
Sbjct: 68  QSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCEL 127

Query: 63  -----------SVSVSDRRLMETRGNKHTLTIKNV-QSTDFGNYSCVADN 100
                      +VS     L  T  ++  LT+    + +   +Y+C+A+N
Sbjct: 128 HLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRISSEQDYTCIAEN 177

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A* Length = 133

 Score = 35.8 bits (83), Expect = 7e-04
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 12/52 (23%)

Query: 4  MSWYQD------TFLI-EPSVSDRRLMETR-GNKHTLTIKNVQSTDFGNYSC 47
          ++W++         L+ E      R+++T+ G+ +TLTI+N+Q  D G Y C
Sbjct: 47 LTWFRKRGSQQPQELVSEEG----RIVQTQNGSVYTLTIQNIQYEDNGIYFC 94

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* Length = 239

 Score = 36.4 bits (84), Expect = 8e-04
 Identities = 11/98 (11%), Positives = 28/98 (28%), Gaps = 9/98 (9%)

Query: 5   SWYQDTFLIEPSVSDRRLMETRGNKHTLT--IKNVQSTDFGNYSCVADNNLGRAKKYMEL 62
           S     F+  P   D   +   G    +T  + ++   D         ++     +    
Sbjct: 13  SEVSSVFIFPPKTKD---VLGGGLTPKVTCVVVDISQNDPEVRFSWFIDD----VEVHTA 65

Query: 63  SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN 100
                +++   T  +   L I      +   + C  ++
Sbjct: 66  QTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNS 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	115
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.87
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.87
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.86
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.86
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.86
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.85
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.84
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.83
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.83
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.83
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.83
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.82
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.82
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.82
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.81
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.81
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.81
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.8
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.8
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.8
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.8
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.79
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.79
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.79
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.79
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.78
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.78
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.78
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.77
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.77
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.77
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.77
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.77
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.77
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.76
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.76
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.76
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.76
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.76
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.76
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.76
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.75
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.75
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.75
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.75
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.75
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.75
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.75
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.74
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.74
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.74
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.74
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.74
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.74
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.73
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.73
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.72
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.72
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.72
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.71
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.71
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.71
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.71
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.71
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.71
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.71
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.7
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.7
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.7
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.7
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.7
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.7
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.69
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.69
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.69
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.69
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.69
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.69
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.69
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.68
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.68
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.68
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.67
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.66
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.66
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.66
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.66
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.65
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.65
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.65
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.65
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.64
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.64
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.64
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.64
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.63
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.63
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.63
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.63
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.63
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.63
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.63
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.62
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.62
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.62
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.62
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.61
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.61
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.61
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.6
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.6
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.6
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.6
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.6
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.59
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.59
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.59
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.58
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.57
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.57
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.57
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.56
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.56
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.56
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.56
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.55
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.55
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.55
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.55
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.55
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.55
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.55
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.54
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.54
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.53
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.53
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.53
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.53
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.52
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.52
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.52
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.51
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.51
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.51
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.51
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.51
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.51
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.51
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.51
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.5
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.5
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.5
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.5
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.5
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.5
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.49
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.49
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.49
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.49
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.48
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.48
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.48
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.47
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.47
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.47
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.47
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.46
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.45
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.44
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.44
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.44
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.44
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.43
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.43
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.43
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.42
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.42
1he7_A	126	High affinity nerve growth factor receptor; transf	99.42
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.42
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.41
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.41
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.4
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.4
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.4
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.4
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.4
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.39
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.38
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.38
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.37
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.36
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.36
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.36
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.36
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.35
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.34
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.34
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.34
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.32
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.32
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.32
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.32
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.31
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.31
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.3
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.3
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.3
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.29
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.29
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.29
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.29
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.28
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.28
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.28
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.27
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.26
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.26
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.25
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.24
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.24
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.24
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.23
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.23
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.23
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.23
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.22
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.22
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.22
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.22
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.21
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.21
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.21
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.21
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.2
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.2
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.2
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.2
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.2
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.2
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.2
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.19
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.19
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.19
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.18
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.18
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.17
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.17
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.17
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.17
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.16
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.16
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.16
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.16
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.16
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.15
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.15
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.15
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.15
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.14
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.14
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.14
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.13
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.13
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.12
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.11
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.11
1he7_A	126	High affinity nerve growth factor receptor; transf	99.11
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.11
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.11
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.11
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.11
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.1
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.1
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.1
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.1
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.1
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.09
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.08
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.08
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.08
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.08
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.08
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.08
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.07
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.07
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.07
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.07
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.06
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.05
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.03
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.02
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.02
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.02
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.02
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.02
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.01
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.01
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.01
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.0
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.0
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	98.99
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	98.99
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	98.99
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	98.98
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	98.98
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	98.97
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	98.97
2ens_A	96	Advanced glycosylation END product-specific recept	98.97
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	98.97
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	98.97
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.96
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.96
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	98.96
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	98.96
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	98.96
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	98.95
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	98.94
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	98.94
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	98.94
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	98.93
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	98.93
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	98.92
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	98.92
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	98.91
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	98.91
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	98.91
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	98.89
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	98.89
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.89
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	98.89
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.89
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	98.87
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	98.87
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	98.87
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	98.87
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	98.87
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	98.86
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	98.85
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	98.85
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	98.85
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.84
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	98.84
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	98.83
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	98.83
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	98.83
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	98.83
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.82
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	98.81
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	98.81
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	98.81
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	98.79
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	98.79
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	98.79
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	98.78
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	98.78
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	98.77
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	98.76
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	98.76
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.75
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	98.75
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	98.75
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	98.74
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	98.74
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	98.74
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.73
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	98.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.72
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	98.72
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	98.71
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	98.69
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	98.69
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	98.68
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	98.68
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	98.68
2ens_A	96	Advanced glycosylation END product-specific recept	98.67
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	98.67
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	98.66
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.66
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	98.66
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	98.66
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	98.65
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.65
3khq_A	133	B-cell antigen receptor complex-associated protei	98.64
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.64
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	98.64
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	98.63
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.63
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	98.63
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	98.62
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	98.62
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	98.62
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	98.61
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	98.6
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.6
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	98.6
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	98.59
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	98.59
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	98.57
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	98.57
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.56
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.56
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	98.55
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.55
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	98.55
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	98.55
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	98.52
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	98.52
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	98.52
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	98.5
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.49
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	98.48
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	98.47
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	98.47
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.47
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	98.46
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	98.44
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.44
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	98.44
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	98.44
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.43
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	98.43
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	98.43
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.42
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	98.42
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.41
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	98.41
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	98.41
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.41
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	98.4
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.39
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.38
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	98.38
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	98.38
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	98.37
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	98.37
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	98.37
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	98.36
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	98.36
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	98.35
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	98.34
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	98.33
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	98.33
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	98.33
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	98.33
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.32
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	98.32
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	98.32
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	98.31
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	98.31
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.31
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	98.31
1xiw_B	79	T-cell surface glycoprotein CD3 delta chain; CD3-e	98.3
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.3
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	98.3
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	98.3
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.3
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.3
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	98.3
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.29
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	98.29
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	98.29
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	98.29
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	98.29
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	98.28
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	98.28
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	98.27
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.26
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	98.26
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	98.26
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	98.25
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.24
3kg5_A	134	B-cell antigen receptor complex-associated protei	98.24
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	98.23
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.23
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	98.23
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	98.23
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	98.23
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	98.22
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	98.21
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.21
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	98.21
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	98.2
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	98.19
1xt5_A	135	Variable region-containing chitin-binding protein	98.19
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	98.17
3khq_A	133	B-cell antigen receptor complex-associated protei	98.17
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	98.16
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	98.16
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.16
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	98.15
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.15
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	98.14
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	98.14
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.13
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	98.12
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.12
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.12
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.12
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	98.12
3sob_L	237	Antibody light chain; beta propeller, protein bind	98.11

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.87  E-value=9.6e-21  Score=113.14  Aligned_cols=111  Identities=14%  Similarity=0.172  Sum_probs=85.8

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeC--CeEEEEEecCCCCCCeEEEEEeecCCcceeEE-------------------
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY-------------------   59 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~-------------------   59 (115)
                      .|.|+|+|||.++..  ..++.+....  ....|.|.++..+|+|.|+|.+.|........                   
T Consensus        32 ~p~i~W~kng~~l~~--~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~Ng~a~~~~~~~~~~~~~~~~~~~~~~~~  109 (207)
T 3rbs_A           32 NAKVNYIFNEKEIFE--GPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQR  109 (207)
T ss_dssp             CCEEEEEETTEEECS--SSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEETTEEEEEEEEECTHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCEECcc--CCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEECCCeEEEEEEEEEccchhhhcccccccc
Confidence            378999999999987  6666555433  45689999999999999999776632111111                   


Q ss_pred             ----------------------------EEEecc-cCCcEEEEEeCC-------------eEEEEEeccCCCCCeeeEEE
Q psy3272          60 ----------------------------MELSVS-VSDRRLMETRGN-------------KHTLTIKNVQSTDFGNYSCV   97 (115)
Q Consensus        60 ----------------------------~~v~g~-~~~~~~~~~~~~-------------~~~l~i~~~~~~d~G~y~C~   97 (115)
                                                  ..+.|. |.|.+.|++++.             ...|.|.++..+|.|.|+|.
T Consensus       110 ~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  189 (207)
T 3rbs_A          110 QEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVI  189 (207)
T ss_dssp             HHHHHHTSSEEEEEEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCCCCSSEEEEEEETTCCGGGCEEEEEE
T ss_pred             cccccCCCCceEecCCcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCceEcCCCEEEEEECCCCcccCEEEEEE
Confidence                                        112567 899999988652             23699999999999999999


Q ss_pred             eecCccceeeEEEEEE
Q psy3272          98 ADNNLGRAKKYMELSE  113 (115)
Q Consensus        98 ~~n~~~~~~~~~~l~v  113 (115)
                      |.|..|..+..+.|.+
T Consensus       190 a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          190 LKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             EEETTEEEEEEEEECC
T ss_pred             EEcCCCEEEEEEEEec
Confidence            9999999999888865

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.87  E-value=4.1e-20  Score=109.76  Aligned_cols=111  Identities=20%  Similarity=0.215  Sum_probs=91.2

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE--E-------------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY--M-------------------   60 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~--~-------------------   60 (115)
                      |.|+|+|++.++..  ..++..........|.|.+++.+|+|.|.|.+.+..+.....  +                   
T Consensus        33 ~~i~W~~~g~~i~~--~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~  110 (212)
T 2r15_A           33 LKVNWSHNGSAIRY--SDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAA  110 (212)
T ss_dssp             CEEEEEETTEECCC--CSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCEEccC--CCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEeeccchhhhccccCccc
Confidence            68999999999987  778777666777889999999999999999998866443321  1                   


Q ss_pred             -----------------------------EEecccCCcEEEEEeCC----------------eEEEEEeccCCCCCeeeE
Q psy3272          61 -----------------------------ELSVSVSDRRLMETRGN----------------KHTLTIKNVQSTDFGNYS   95 (115)
Q Consensus        61 -----------------------------~v~g~~~~~~~~~~~~~----------------~~~l~i~~~~~~d~G~y~   95 (115)
                                                   .+.|.|.|.+.|.+++.                ...|.|.++..+|.|.|+
T Consensus       111 ~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  190 (212)
T 2r15_A          111 IAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYG  190 (212)
T ss_dssp             HHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEE
T ss_pred             ccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEE
Confidence                                         11568888999987542                238999999999999999


Q ss_pred             EEeecCccceeeEEEEEEe
Q psy3272          96 CVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        96 C~~~n~~~~~~~~~~l~v~  114 (115)
                      |.|.|..|.....+.|.|.
T Consensus       191 C~a~N~~g~~~~~~~l~V~  209 (212)
T 2r15_A          191 LVVKNKYGSETSDFTVSVF  209 (212)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEcCCCcEEEEEEEEEE
Confidence            9999999998888888775

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.86  E-value=4.1e-20  Score=124.00  Aligned_cols=113  Identities=24%  Similarity=0.355  Sum_probs=96.0

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE----------------
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL----------------   62 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v----------------   62 (115)
                      .|.|+|+|++.++..  ..++.+........|.|.++..+|+|.|.|.+.|..|....  .+.|                
T Consensus       413 ~p~v~W~k~g~~l~~--~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~~~~~~~~~  490 (570)
T 3b43_A          413 PFQVSWHKDKRELRS--GKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTV  490 (570)
T ss_dssp             SCCCEEEETTEECCS--SSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEEEECCCCBCCB
T ss_pred             CCEEEEEECCEECcC--CCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCcccccCCCceec
Confidence            368999999999887  77777666666788999999999999999999999887765  3433                


Q ss_pred             -----------ecccCCcEEEEEeC----------------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEeC
Q psy3272          63 -----------SVSVSDRRLMETRG----------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE  115 (115)
Q Consensus        63 -----------~g~~~~~~~~~~~~----------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~~  115 (115)
                                 .|.|.+.+.|.+++                ....|.|.++..+|+|.|+|.|.|..|..+..+.|.|+|
T Consensus       491 ~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L~V~e  570 (570)
T 3b43_A          491 VGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE  570 (570)
T ss_dssp             TTCCEEEEEEEESCSSCCCEEEETTEECCCCTTTEEECCCSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEECCBC
T ss_pred             CCCeEEEEEEEecCCCCEEEEEeCCeEeccCCCeEEEEECCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEEEEeC
Confidence                       56888899998764                134799999999999999999999999999999999875

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.86  E-value=6.5e-20  Score=107.63  Aligned_cols=112  Identities=24%  Similarity=0.345  Sum_probs=91.9

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE-----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL-----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v-----------------   62 (115)
                      |.+.|++++..+..  ..++..........|.|.++..+|+|.|.|.+.+..+....  .+.|                 
T Consensus        37 ~~v~W~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~  114 (197)
T 3lcy_A           37 PDIKWYRFGKELIQ--SRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYY  114 (197)
T ss_dssp             CEEEEEETTEEECC--CSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECTTSCCCSEEE
T ss_pred             CEEEEEECCEECCC--CccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCceeEEEEEEEEcCCCCCCCccCCccee
Confidence            57999999999877  67777666666779999999999999999999987766554  3333                 


Q ss_pred             -------------ecccCCcEEEEEeCC---------------eEEEEEeccCC-CCCeeeEEEeecCccceeeEEEEEE
Q psy3272          63 -------------SVSVSDRRLMETRGN---------------KHTLTIKNVQS-TDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        63 -------------~g~~~~~~~~~~~~~---------------~~~l~i~~~~~-~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                                   .|.|.+.+.|..++.               ...|.|.++.. +|.|.|+|.|.|..|..+..+.|.|
T Consensus       115 ~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  194 (197)
T 3lcy_A          115 GAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEI  194 (197)
T ss_dssp             EETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             ecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEE
Confidence                         568888899987542               25799999985 8999999999999999999999988


Q ss_pred             eC
Q psy3272         114 LE  115 (115)
Q Consensus       114 ~~  115 (115)
                      .+
T Consensus       195 ~~  196 (197)
T 3lcy_A          195 QD  196 (197)
T ss_dssp             EC
T ss_pred             ec
Confidence            64

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.86  E-value=6.6e-20  Score=113.15  Aligned_cols=112  Identities=24%  Similarity=0.350  Sum_probs=94.0

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE-----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL-----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v-----------------   62 (115)
                      |.+.|++++..+..  ..++..........|.|.++..+|+|.|.|.+.+..+....  .+.|                 
T Consensus       129 ~~v~W~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~  206 (284)
T 2rik_A          129 IKVLWYKDETEIQE--SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLK  206 (284)
T ss_dssp             CEEEEEETTEECCC--SSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECT
T ss_pred             CEEEEEECCEECcC--CCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcceecC
Confidence            68999999999887  66766666677889999999999999999999988776655  3433                 


Q ss_pred             ----------ecccCCcEEEEEeCC---------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEeC
Q psy3272          63 ----------SVSVSDRRLMETRGN---------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE  115 (115)
Q Consensus        63 ----------~g~~~~~~~~~~~~~---------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~~  115 (115)
                                .|.|.+.+.|.+++.               ...|.|.++..+|.|.|+|.|.|..|.....+.|.|.+
T Consensus       207 g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  284 (284)
T 2rik_A          207 GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA  284 (284)
T ss_dssp             TCCEEEEEECBSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEECC
T ss_pred             CCeEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEcC
Confidence                      567888899987652               24799999999999999999999999999999998864

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.85  E-value=5.6e-20  Score=107.86  Aligned_cols=113  Identities=27%  Similarity=0.305  Sum_probs=89.8

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE-----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL-----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v-----------------   62 (115)
                      |.+.|++++..+......++..........|.|.+++.+|+|.|.|.+.+..+....  .+.|                 
T Consensus        35 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~  114 (194)
T 2a38_A           35 PEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMT  114 (194)
T ss_dssp             CEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEEEEECCCCEE
T ss_pred             CEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCceEeEEEEEEEccCCCCCEEEeCCccEE
Confidence            689999999888763223555555667789999999999999999999887665544  2322                 


Q ss_pred             -------------ecccCCcEEEEEeCC---------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 -------------SVSVSDRRLMETRGN---------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 -------------~g~~~~~~~~~~~~~---------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                                   .|.|.+.+.|.+++.               ...|.|.++..+|.|.|+|.|.|..|.....+.|.|.
T Consensus       115 ~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  194 (194)
T 2a38_A          115 VRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ  194 (194)
T ss_dssp             ECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence                         567888888887542               2279999999999999999999999999888888773

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.84  E-value=1.9e-19  Score=105.91  Aligned_cols=113  Identities=24%  Similarity=0.317  Sum_probs=89.0

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEE-eCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v----------------   62 (115)
                      |.|.|++++..+... ..++.... ......|.|.+++.+|+|.|.|.+.+..+....  .+.|                
T Consensus        34 ~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~  112 (197)
T 2j8h_A           34 PIVKWYRQGKEIIAD-GLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMG  112 (197)
T ss_dssp             CEEEEEETTEECCCC-SSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEEEEEECCSSCBTTBE
T ss_pred             CEEEEEECCEECccC-CCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCceeEEEEEEEcCCCcCCCCccccccC
Confidence            689999999988651 34444433 334568999999999999999999987665444  3333                


Q ss_pred             ----------------ecccCCcEEEEEeCC---------------eEEEEEec-cCCCCCeeeEEEeecCccceeeEEE
Q psy3272          63 ----------------SVSVSDRRLMETRGN---------------KHTLTIKN-VQSTDFGNYSCVADNNLGRAKKYME  110 (115)
Q Consensus        63 ----------------~g~~~~~~~~~~~~~---------------~~~l~i~~-~~~~d~G~y~C~~~n~~~~~~~~~~  110 (115)
                                      .|.|.+.+.|.+++.               ...|.|.+ +..+|.|.|+|.|.|..|..+..+.
T Consensus       113 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~  192 (197)
T 2j8h_A          113 AVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVE  192 (197)
T ss_dssp             EEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEE
Confidence                            457888899987652               24788999 9999999999999999999999999


Q ss_pred             EEEeC
Q psy3272         111 LSELE  115 (115)
Q Consensus       111 l~v~~  115 (115)
                      |.|.+
T Consensus       193 l~V~d  197 (197)
T 2j8h_A          193 LDVAD  197 (197)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99875

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.83  E-value=8.6e-19  Score=109.44  Aligned_cols=111  Identities=20%  Similarity=0.212  Sum_probs=91.0

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE---------------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM---------------------   60 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~---------------------   60 (115)
                      |.|+|++++..+..  ..++..........|.|.++..+|.|.|.|.+.+..+.....+                     
T Consensus       138 ~~i~W~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~  215 (317)
T 2y25_A          138 LKVNWSHNGSAIRY--SDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAA  215 (317)
T ss_dssp             CEEEEEESSSBCCC--CSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEECCEECCC--CCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcc
Confidence            68999999998877  6777766666677899999999999999999998665443311                     


Q ss_pred             -----------------------------EEecccCCcEEEEEeCC----------------eEEEEEeccCCCCCeeeE
Q psy3272          61 -----------------------------ELSVSVSDRRLMETRGN----------------KHTLTIKNVQSTDFGNYS   95 (115)
Q Consensus        61 -----------------------------~v~g~~~~~~~~~~~~~----------------~~~l~i~~~~~~d~G~y~   95 (115)
                                                   .+.|.|.|.+.|.+++.                ...|.|.++..+|.|.|+
T Consensus       216 ~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  295 (317)
T 2y25_A          216 IAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYG  295 (317)
T ss_dssp             HHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEE
T ss_pred             cCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEE
Confidence                                         11678889999987642                238999999999999999


Q ss_pred             EEeecCccceeeEEEEEEe
Q psy3272          96 CVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        96 C~~~n~~~~~~~~~~l~v~  114 (115)
                      |.|.|..|..+..+.|.|.
T Consensus       296 C~a~N~~g~~~~~~~l~V~  314 (317)
T 2y25_A          296 LVVKNKYGSETSDFTVSVF  314 (317)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEeCCCeEEEEEEEEEE
Confidence            9999999999998888875

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.83  E-value=6.2e-19  Score=118.31  Aligned_cols=112  Identities=24%  Similarity=0.350  Sum_probs=92.9

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE----------------
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL----------------   62 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v----------------   62 (115)
                      .|.|+|+|++..+..  ..++..........|.|.++..+|+|.|+|.+.|..+....  .+.|                
T Consensus       320 ~p~v~W~k~~~~l~~--~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~~~  397 (570)
T 3b43_A          320 EIKVLWYKDETEIQE--SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL  397 (570)
T ss_dssp             SCEEEEEETTEECCC--SSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCCEEEC
T ss_pred             CCEEEEeECCEECCC--CCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCceeec
Confidence            368999999999887  67776666667789999999999999999999998877665  3333                


Q ss_pred             -----------ecccCCcEEEEEeCC---------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 -----------SVSVSDRRLMETRGN---------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 -----------~g~~~~~~~~~~~~~---------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                                 .|.|.|.+.|.+++.               ...|.|.++..+|.|.|+|.|.|..|.....+.|.|.
T Consensus       398 ~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  475 (570)
T 3b43_A          398 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK  475 (570)
T ss_dssp             TTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEec
Confidence                       568889999987652               2468999999999999999999999998887777664

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.83  E-value=6.9e-19  Score=103.18  Aligned_cols=105  Identities=22%  Similarity=0.333  Sum_probs=83.6

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE-----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL-----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v-----------------   62 (115)
                      |.|+|+|++..+..  ....     .....|.|.+++.+|+|.|.|.+.+. +....  .+.|                 
T Consensus        35 ~~v~W~~~~~~~~~--~~~~-----~~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~~~~~~l~V~~~p~~~~~~~~~~~~~  106 (190)
T 2wv3_A           35 MYSYWTKNGVELTA--TRKN-----ASNMEYRINKPRAEDSGEYHCVYHFV-SAPKANATIEVKAAPDITGHKRSENKNE  106 (190)
T ss_dssp             EEEEEEETTEECTT--CCBC-----CSEEEEEESSCCGGGCEEEEEEEEET-TEEEEEEEEEEECCCEEEEECSEEEEET
T ss_pred             eEEEEEECCEECcc--cceE-----eccEEEEEecCCcccCEEEEEEEEeC-CcccccEEEEEecCCcccccCCcceeeC
Confidence            57999999998876  3321     25688999999999999999999887 44443  3333                 


Q ss_pred             ----------ecccCCcEEEEEe--CC------------------eEEEEEeccC-CCCCeeeEEEeecCccceeeEEEE
Q psy3272          63 ----------SVSVSDRRLMETR--GN------------------KHTLTIKNVQ-STDFGNYSCVADNNLGRAKKYMEL  111 (115)
Q Consensus        63 ----------~g~~~~~~~~~~~--~~------------------~~~l~i~~~~-~~d~G~y~C~~~n~~~~~~~~~~l  111 (115)
                                .|.|.|.+.|.+.  +.                  ...|.|.++. .+|.|.|+|.|.|..|.....+.|
T Consensus       107 g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l  186 (190)
T 2wv3_A          107 GQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVL  186 (190)
T ss_dssp             TSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEE
T ss_pred             CCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEE
Confidence                      5688889999883  21                  1269999999 799999999999999998888888


Q ss_pred             EEe
Q psy3272         112 SEL  114 (115)
Q Consensus       112 ~v~  114 (115)
                      .|.
T Consensus       187 ~V~  189 (190)
T 2wv3_A          187 RVR  189 (190)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            774

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.82  E-value=2.2e-18  Score=106.34  Aligned_cols=111  Identities=27%  Similarity=0.361  Sum_probs=91.4

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE-----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL-----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v-----------------   62 (115)
                      |.|+|+|++..+..  ..++..........|.|.+++.+|+|.|.|.+.+..+....  .+.|                 
T Consensus        35 ~~v~W~~~~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~  112 (284)
T 2rik_A           35 IKITWAKDNREIRP--GGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVK  112 (284)
T ss_dssp             CEEEEEETTEECCS--SSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEECCCSEEEEE
T ss_pred             CEEEEEECCEECcC--CCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECCceEEEEEEEEccCCCcccccCCCceEec
Confidence            58999999999887  67776666677899999999999999999999987766544  3333                 


Q ss_pred             -----------ecccCCcEEEEEeCC---------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 -----------SVSVSDRRLMETRGN---------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 -----------~g~~~~~~~~~~~~~---------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                                 .|.|.+.+.|.+++.               ...|.|.++..+|.|.|+|.+.|..|.....+.|.|.
T Consensus       113 ~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  190 (284)
T 2rik_A          113 QDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK  190 (284)
T ss_dssp             TTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEe
Confidence                       457888888887542               3479999999999999999999999998888888774

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.82  E-value=4.9e-19  Score=105.54  Aligned_cols=107  Identities=13%  Similarity=0.046  Sum_probs=78.7

Q ss_pred             cceEEEECCEEeC---------------CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE--
Q psy3272           2 GMMSWYQDTFLIE---------------PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL--   62 (115)
Q Consensus         2 p~v~W~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v--   62 (115)
                      |.|+|+|+|.++.               .....++..........|.|.+++.+|+|.|.|.+.+..+....  .|.|  
T Consensus        26 ~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~  105 (203)
T 4fa8_A           26 IEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVK  105 (203)
T ss_dssp             SEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             cEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCeEEEEEEEcCCCcEEEEEEEEecC
Confidence            6899999864211               00022344444566788999999999999999999998877666  3433  


Q ss_pred             -------------------------ecccCCcEEEEEeCC-------------------eEEEEEeccCCCCCeeeEEEe
Q psy3272          63 -------------------------SVSVSDRRLMETRGN-------------------KHTLTIKNVQSTDFGNYSCVA   98 (115)
Q Consensus        63 -------------------------~g~~~~~~~~~~~~~-------------------~~~l~i~~~~~~d~G~y~C~~   98 (115)
                                               .|.|.|.+.|..++.                   ...+.|.++..+|.|.|+|.|
T Consensus       106 p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A  185 (203)
T 4fa8_A          106 PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVG  185 (203)
T ss_dssp             EEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEECTTSCEEEEEEEEECSSCCCCEEEEE
T ss_pred             CceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEE
Confidence                                     678999999965321                   124566789999999999999


Q ss_pred             ecCccceeeE
Q psy3272          99 DNNLGRAKKY  108 (115)
Q Consensus        99 ~n~~~~~~~~  108 (115)
                      .|..|..+..
T Consensus       186 ~N~~G~a~~v  195 (203)
T 4fa8_A          186 KNDKEEAHGV  195 (203)
T ss_dssp             ESSSCEEEEE
T ss_pred             EcCCCEEEEE
Confidence            9999997753

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.82  E-value=2e-18  Score=102.81  Aligned_cols=112  Identities=22%  Similarity=0.368  Sum_probs=86.2

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEe-CCeEEEEEecCCC-CCCeEEEEEeecCCcc-eeE--EEEE--------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETR-GNKHTLTIKNVQS-TDFGNYSCVADNNLGR-AKK--YMEL--------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~-~d~G~y~C~~~~~~~~-~~~--~~~v--------------   62 (115)
                      |.|.|++++..+... ..++..... .....|.|.++.. +|+|.|.|.+.+..+. ...  .+.|              
T Consensus        36 ~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~  114 (212)
T 2yd1_A           36 PSIVWRKNGKKVSGT-QSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVIT  114 (212)
T ss_dssp             CEEEEEETTEECCTT-STTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEE
T ss_pred             CeEEEEECCEECCCC-cceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeE
Confidence            589999999988731 555554433 3347899999999 9999999999987766 222  3333              


Q ss_pred             --------------------ecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCccceeeE-E
Q psy3272          63 --------------------SVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKY-M  109 (115)
Q Consensus        63 --------------------~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~-~  109 (115)
                                          .|.|.+.+.|..++.            ...|.|.++..+|.|.|+|.|.|..|..... +
T Consensus       115 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~  194 (212)
T 2yd1_A          115 QGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKAT  194 (212)
T ss_dssp             ECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEETTEEEECSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             eCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccCCeEEEccCChhhCEEEEEEeecCCCceeEEEE
Confidence                                457888888987652            1279999999999999999999999997654 7


Q ss_pred             EEEEe
Q psy3272         110 ELSEL  114 (115)
Q Consensus       110 ~l~v~  114 (115)
                      .|.|.
T Consensus       195 ~l~V~  199 (212)
T 2yd1_A          195 NLYVK  199 (212)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77775

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.81  E-value=3.7e-18  Score=101.73  Aligned_cols=111  Identities=23%  Similarity=0.293  Sum_probs=82.9

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEE-eCCeEEEEEecC-CCCCCeEEEEEeecCCcceeE--EEEE---------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMET-RGNKHTLTIKNV-QSTDFGNYSCVADNNLGRAKK--YMEL---------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~-~~~d~G~y~C~~~~~~~~~~~--~~~v---------------   62 (115)
                      |.|.|++++..+..  ........ ......|.|.++ ..+|+|.|.|.+.+..+....  .+.|               
T Consensus        36 ~~v~W~k~~~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~  113 (212)
T 2yd6_A           36 PKIVWNKKGKKVSN--QRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDM  113 (212)
T ss_dssp             CEEEEEETTEECCC--TTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTEEEEEEEEEEEECGGGCCTTCCEEEE
T ss_pred             CEEEEEECCcCCCC--CceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCCcEEEEEEEEEeccCccCCCcceeec
Confidence            68999999998875  33222222 234678999999 499999999999987766444  2322               


Q ss_pred             -------------------ecccCCcEEEEEeCC------------------eEEEEEeccCCCCCeeeEEEeecCccce
Q psy3272          63 -------------------SVSVSDRRLMETRGN------------------KHTLTIKNVQSTDFGNYSCVADNNLGRA  105 (115)
Q Consensus        63 -------------------~g~~~~~~~~~~~~~------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~  105 (115)
                                         .|.|.+.+.|.+++.                  ...|.|.++..+|.|.|+|.|.|..|..
T Consensus       114 ~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~  193 (212)
T 2yd6_A          114 GPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTR  193 (212)
T ss_dssp             CCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCcc
Confidence                               567888899987541                  2689999999999999999999999985


Q ss_pred             ee-EEEEEEe
Q psy3272         106 KK-YMELSEL  114 (115)
Q Consensus       106 ~~-~~~l~v~  114 (115)
                      .+ .+.|.|+
T Consensus       194 ~s~~a~l~~~  203 (212)
T 2yd6_A          194 YSAPANLYVR  203 (212)
T ss_dssp             ECCCEEEEEE
T ss_pred             ccccccEEEE
Confidence            43 5556553

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.81  E-value=3e-18  Score=100.72  Aligned_cols=108  Identities=18%  Similarity=0.298  Sum_probs=82.5

Q ss_pred             cceEEEECCEEeCCCCC--CCEEEEEeCC-------eEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE-------
Q psy3272           2 GMMSWYQDTFLIEPSVS--DRRLMETRGN-------KHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL-------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~--~~~~~~~~~~-------~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v-------   62 (115)
                      |.|+|+|++..+..  .  .++.......       ...|.|.+++.+|+|.|.|.+.+..+....   .+.|       
T Consensus        33 ~~v~W~~~g~~l~~--~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~  110 (195)
T 2c5d_C           33 PEVHWLRDGQILEL--ADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFL  110 (195)
T ss_dssp             CCCEEEETTEECCS--CEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEECCSCEEE
T ss_pred             cEEEEEECCEEccc--CCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEeCCCceecccEEEEEecCCeEE
Confidence            68999999998876  4  2233322222       578999999999999999999987654322   3333       


Q ss_pred             --------------------ecccCC-cEEEEEeC----------CeEEEEEeccCCCCCeeeEEEeecCcccee-eEEE
Q psy3272          63 --------------------SVSVSD-RRLMETRG----------NKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYME  110 (115)
Q Consensus        63 --------------------~g~~~~-~~~~~~~~----------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~-~~~~  110 (115)
                                          .|.|.| .+.|.+++          ....|.|.++.  |+|.|+|.|.|..|... ..+.
T Consensus       111 ~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~  188 (195)
T 2c5d_C          111 EEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTAT  188 (195)
T ss_dssp             ECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTSSCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEE
T ss_pred             cCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCcCCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEE
Confidence                                568888 89998876          34689999887  78999999999999875 6777


Q ss_pred             EEE
Q psy3272         111 LSE  113 (115)
Q Consensus       111 l~v  113 (115)
                      |.|
T Consensus       189 l~V  191 (195)
T 2c5d_C          189 ITV  191 (195)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            776

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.80  E-value=8.4e-19  Score=112.70  Aligned_cols=108  Identities=29%  Similarity=0.402  Sum_probs=85.6

Q ss_pred             CcceEEEEC-CEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE---------------
Q psy3272           1 MGMMSWYQD-TFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL---------------   62 (115)
Q Consensus         1 ~p~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v---------------   62 (115)
                      .|.+.|+|+ +..+..  ..+    .......|.|.++..+|+|.|.|.+.|..+....  .+.|               
T Consensus       234 ~p~i~W~k~~~~~~~~--~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v  307 (384)
T 3kld_A          234 VPTILWRRADGKPIAR--KAR----RHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHV  307 (384)
T ss_dssp             CCEEEEEETTCCCCCT--TCE----ECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEE
T ss_pred             CCcEEEEeCCCccccc--cce----ecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccCCCceEe
Confidence            378999995 444443  221    2234568999999999999999999998877655  3333               


Q ss_pred             ------------ecccCCcEEEEEeCCe-----------EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 ------------SVSVSDRRLMETRGNK-----------HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ------------~g~~~~~~~~~~~~~~-----------~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                                  .|.|.|.+.|.+++..           ..|.|..+..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       308 ~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~  382 (384)
T 3kld_A          308 AMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI  382 (384)
T ss_dssp             CTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             cCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEeCCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence                        6789999999887631           379999999999999999999999999999989885

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.80  E-value=7.7e-19  Score=105.27  Aligned_cols=111  Identities=24%  Similarity=0.433  Sum_probs=85.1

Q ss_pred             cceEEEECCEEeCCCCCCCEE-EEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRL-METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v----------------   62 (115)
                      |.|.|++++..+..  ..++. .........|.|.+++.+|+|.|.|.+.+..+....  .+.|                
T Consensus        49 ~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~  126 (231)
T 3ojm_B           49 PTMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPA  126 (231)
T ss_dssp             CEEEEEETTEECCG--GGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEECTTCSC
T ss_pred             CeEEEEECCccccc--cccccceeeecCcceEEEecCCcccCEEEEEEEecccCcccccEEEEEEcCCCCCCceeeccCC
Confidence            68999999998865  22211 112234568999999999999999999987766544  3333                


Q ss_pred             ----------------ecccCCcEEEEE----eCC----------------------eEEEEEeccCCCCCeeeEEEeec
Q psy3272          63 ----------------SVSVSDRRLMET----RGN----------------------KHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        63 ----------------~g~~~~~~~~~~----~~~----------------------~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                                      .|.|.+.+.|.+    ++.                      ...|.|.++..+|.|.|+|.|.|
T Consensus       127 ~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  206 (231)
T 3ojm_B          127 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSN  206 (231)
T ss_dssp             CEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEE
T ss_pred             ceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEe
Confidence                            467888899987    221                      12599999999999999999999


Q ss_pred             CccceeeEEEEEEe
Q psy3272         101 NLGRAKKYMELSEL  114 (115)
Q Consensus       101 ~~~~~~~~~~l~v~  114 (115)
                      ..|..+..+.|.|.
T Consensus       207 ~~g~~~~~~~l~V~  220 (231)
T 3ojm_B          207 YIGQANQSAWLTVL  220 (231)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             ccceEeeEEEEEEe
Confidence            99999888888875

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.80  E-value=1.4e-18  Score=111.32  Aligned_cols=112  Identities=22%  Similarity=0.332  Sum_probs=86.9

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v----------------   62 (115)
                      |.|.|+|++..+......++.......+..|.|.++..+|+|.|.|.+.+..+....   .|.|                
T Consensus       242 ~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~  321 (395)
T 1bih_A          242 GYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVV  321 (395)
T ss_dssp             CCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEE
T ss_pred             CeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEe
Confidence            679999999988752233332211223448999999999999999999988766433   3333                


Q ss_pred             ------------ecccCCcEEEEEeCCe----------EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          63 ------------SVSVSDRRLMETRGNK----------HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        63 ------------~g~~~~~~~~~~~~~~----------~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                                  .|.|.|.+.|.+++..          ..|.|.++..+|.|.|+|.|.|..|.....+.|.|
T Consensus       322 ~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          322 KQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             CTTSCEEEECEEEEESCCCCEEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCCCeEEEEEEECcccCCeeEEEECCEECCCCceEEECCEEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence                        5688889999886532          27999999999999999999999999999888877

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.80  E-value=6.8e-19  Score=102.65  Aligned_cols=110  Identities=15%  Similarity=0.145  Sum_probs=81.1

Q ss_pred             cceEEEECCEEeCC--------CCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcce--eE--EEEE-------
Q psy3272           2 GMMSWYQDTFLIEP--------SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA--KK--YMEL-------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~--~~--~~~v-------   62 (115)
                      |.|.|+|++..+..        ....++.+   .....|.|.+++.+|+|.|.|.+.+..+..  ..  .|.|       
T Consensus        28 ~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~---~~~gsL~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~~p  104 (176)
T 1hng_A           28 DEVRWERGSTLVAEFKRKMKPFLKSGAFEI---LANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKP  104 (176)
T ss_dssp             EEEEEEETTEEEEEEETTSCCEESSTTEEE---CTTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCCCCC
T ss_pred             ccEEEEeCCceeEEEcCCCeecCCCCeEEE---CCCCcEEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCCCCC
Confidence            57999999975520        01344443   123459999999999999999999887765  32  3333       


Q ss_pred             ---------------ecccCCcEEEEEeCCeE----EEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 ---------------SVSVSDRRLMETRGNKH----TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ---------------~g~~~~~~~~~~~~~~~----~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                                     .|.|.|.+.|.+++...    .+.|..+..+|.|.|+|.|.|..|.......|.+.
T Consensus       105 ~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~~  175 (176)
T 1hng_A          105 MIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNCP  175 (176)
T ss_dssp             EEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEESSSEEEEECSCCSSCEEEEEEETTEEEEEEECCCCC
T ss_pred             EEEecCCcEEEEEEecCCCCcEEEEEECCEECCCCCcEEEEEEEccCCeEEEEEEEecCCCceecccccCC
Confidence                           45788899998876422    35677888999999999999999998887766543

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.79  E-value=1.7e-18  Score=104.61  Aligned_cols=111  Identities=26%  Similarity=0.416  Sum_probs=84.8

Q ss_pred             cceEEEECCEEeCCCCCCCE-EEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRR-LMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v----------------   62 (115)
                      |.|.|++++..+..  ..+. ..........|.|.+++.+|+|.|.|.+.+..+....  .+.|                
T Consensus        45 ~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~  122 (241)
T 3grw_A           45 PSISWLKNGREFRG--EHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPA  122 (241)
T ss_dssp             CEEEEEETTEECCG--GGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEEEECTTC
T ss_pred             ceeEEEECCcccCC--CCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEEEEEEEEeccCCCCceeecCCCc
Confidence            68999999998865  2221 1112234568999999999999999999887665544  3333                


Q ss_pred             ----------------ecccCCcEEEEE----eC-----------------------CeEEEEEeccCCCCCeeeEEEee
Q psy3272          63 ----------------SVSVSDRRLMET----RG-----------------------NKHTLTIKNVQSTDFGNYSCVAD   99 (115)
Q Consensus        63 ----------------~g~~~~~~~~~~----~~-----------------------~~~~l~i~~~~~~d~G~y~C~~~   99 (115)
                                      .|.|.+.+.|.+    ++                       ....|.|.++..+|.|.|+|.|.
T Consensus       123 ~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  202 (241)
T 3grw_A          123 NQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRAT  202 (241)
T ss_dssp             SEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEe
Confidence                            468888999988    22                       12369999999999999999999


Q ss_pred             cCccceeeEEEEEEe
Q psy3272         100 NNLGRAKKYMELSEL  114 (115)
Q Consensus       100 n~~~~~~~~~~l~v~  114 (115)
                      |..|..+..+.|.|.
T Consensus       203 N~~g~~~~~~~l~V~  217 (241)
T 3grw_A          203 NFIGVAEKAFWLSVH  217 (241)
T ss_dssp             CSSCEEEEEEEEEC-
T ss_pred             cCcceEEEEEEEEec
Confidence            999999988888874

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.79  E-value=8.9e-18  Score=97.68  Aligned_cols=108  Identities=18%  Similarity=0.263  Sum_probs=81.9

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCC--eEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE--------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGN--KHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL--------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v--------------   62 (115)
                      |.|.|+|++..+..  ..+........  ...|.|.+++.+|+|.|.|.+.+..+....   .+.|              
T Consensus        32 ~~v~W~k~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~  109 (182)
T 1rhf_A           32 PDIQWVKDGAVVQN--LDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLA  109 (182)
T ss_dssp             CCEEEEETTEECCS--SEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEECSCEEEECCCCEE
T ss_pred             CeEEEEECCeecCC--CCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEEEEEEEEEecCCeEEecCcceE
Confidence            68999999998876  44433332222  478999999999999999999987543222   3433              


Q ss_pred             -------------ecccCC-cEEEEEeCC--------eEEEEEeccCCCCCeeeEEEeecCcccee-eEEEEEE
Q psy3272          63 -------------SVSVSD-RRLMETRGN--------KHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELSE  113 (115)
Q Consensus        63 -------------~g~~~~-~~~~~~~~~--------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~-~~~~l~v  113 (115)
                                   .|.|.| .+.|..++.        ...|.|.++  +|.|.|+|.|.|..|... ..+.|.|
T Consensus       110 ~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          110 VPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             ECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEESSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCCCceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence                         568888 899988652        457888888  589999999999999875 4777776

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.79  E-value=3.1e-18  Score=109.97  Aligned_cols=109  Identities=20%  Similarity=0.334  Sum_probs=87.5

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE-----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL-----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v-----------------   62 (115)
                      |.++|++++..+..  ...   ........|.|.++..+|+|.|.|.+.+..+....  .+.|                 
T Consensus       252 ~~v~W~~~~~~~~~--~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~  326 (404)
T 3p3y_A          252 PDIAWYKKGGDLPS--DKA---KFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAP  326 (404)
T ss_dssp             CEEEEEETTBCCCT--TTE---EEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEECCCCEEECT
T ss_pred             CcEEEEECCEECCC--Ccc---cccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeeccCCcceeec
Confidence            68999999988765  332   12234568999999999999999999998877655  3333                 


Q ss_pred             ----------ecccCCcEEEEEeCC--------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEeC
Q psy3272          63 ----------SVSVSDRRLMETRGN--------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE  115 (115)
Q Consensus        63 ----------~g~~~~~~~~~~~~~--------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~~  115 (115)
                                .|.|.+.+.|.+++.              ...|.|.++..+|.|.|+|.|.|..|.....+.|.|.+
T Consensus       327 g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~d  403 (404)
T 3p3y_A          327 GEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD  403 (404)
T ss_dssp             TCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             CCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence                      568889999988652              12699999999999999999999999999999998864

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.79  E-value=4.3e-18  Score=99.33  Aligned_cols=110  Identities=24%  Similarity=0.297  Sum_probs=79.3

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE----EEEE---------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK----YMEL---------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~----~~~v---------------   62 (115)
                      |.+.|++++..+......++..   .....|.|.+++.+|+|.|.|.+.+..+....    .+.+               
T Consensus        32 ~~v~W~~~~~~~~~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~  108 (189)
T 2v5t_A           32 PAVSWLYHNEEVTTISDNRFAM---LANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNA  108 (189)
T ss_dssp             CEEEEEC-----CBCCCTTEEE---CTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEE
T ss_pred             CEEEEEECCccceeccCCeEEE---ecCCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccc
Confidence            6899999998776422444432   23457999999999999999999876533321    2222               


Q ss_pred             --------------ecccCCcEEEEEeCC-------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 --------------SVSVSDRRLMETRGN-------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 --------------~g~~~~~~~~~~~~~-------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                                    .|.|.+.+.|..++.             ...|.|.++..+|.|.|+|.|.|..|.....+.|.|.
T Consensus       109 ~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          109 TAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             ETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence                          457888889987652             2369999999999999999999999998888887764

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.78  E-value=2.9e-18  Score=100.85  Aligned_cols=112  Identities=23%  Similarity=0.244  Sum_probs=84.0

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE-----EE----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK-----YM----------------   60 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~-----~~----------------   60 (115)
                      |.|+|++++..+......+.  ........|.|.+++.+|+|.|.|.+.+..+....     .+                
T Consensus        40 ~~v~W~~~~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  117 (201)
T 3s97_C           40 LSYRWLLNEFPVFITMDKRR--FVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIV  117 (201)
T ss_dssp             CEEEEEESSTTCBCCCSSSE--EECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEE
T ss_pred             eEEEEEECCceeeeeeCCCe--EEEcCCCeEEECcCCcccCeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceE
Confidence            68999999877643112222  12234577999999999999999999874422221     10                


Q ss_pred             ------------------EEecccCCcEEEEEeCC-----------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEE
Q psy3272          61 ------------------ELSVSVSDRRLMETRGN-----------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL  111 (115)
Q Consensus        61 ------------------~v~g~~~~~~~~~~~~~-----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l  111 (115)
                                        .+.|.|.+.+.|.+++.           ...|.|.++..+|.|.|+|.|.|..|.....+.|
T Consensus       118 ~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  197 (201)
T 3s97_C          118 VQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARI  197 (201)
T ss_dssp             EECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             ecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceeecCCCCEEEEccCChhhCEEEEEEEEecCCceeeeEEE
Confidence                              01568889999988652           3479999999999999999999999999999999


Q ss_pred             EEeC
Q psy3272         112 SELE  115 (115)
Q Consensus       112 ~v~~  115 (115)
                      .|.+
T Consensus       198 ~V~a  201 (201)
T 3s97_C          198 YVQA  201 (201)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            8864

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.78  E-value=1.3e-17  Score=97.62  Aligned_cols=110  Identities=22%  Similarity=0.413  Sum_probs=81.9

Q ss_pred             cceEEEE-CCEEeCCCCCCCEEEE-EeCCeEEEEEecCCCCCCeEEEEEeecCCcc-eeE--EEEE--------------
Q psy3272           2 GMMSWYQ-DTFLIEPSVSDRRLME-TRGNKHTLTIKNVQSTDFGNYSCVADNNLGR-AKK--YMEL--------------   62 (115)
Q Consensus         2 p~v~W~~-~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~-~~~--~~~v--------------   62 (115)
                      |.+.|++ ++..+... ..++... .......|.|.++..+|+|.|.|.+.+..+. ...  .+.|              
T Consensus        33 ~~v~W~~~~g~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~  111 (191)
T 1epf_A           33 KDISWFSPNGEKLSPN-QQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQE  111 (191)
T ss_dssp             CEEEEECTTSCEECCB-SSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEEEECCSSEE
T ss_pred             ceEEEEeCCCccccCC-CCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcceEEEEEEEeecCceEecCCCcEe
Confidence            6899999 88877631 4444433 2356789999999999999999999987732 222  3333              


Q ss_pred             -------------ecccCCcEEEEEeCCe--------------EEEEEeccCCCCCeeeEEEeecCccceeeEEEEE
Q psy3272          63 -------------SVSVSDRRLMETRGNK--------------HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS  112 (115)
Q Consensus        63 -------------~g~~~~~~~~~~~~~~--------------~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~  112 (115)
                                   .|.|.+.+.|.+++..              ..|.|.++..+|.|.|+|.|.|..+.......+.
T Consensus       112 ~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~  188 (191)
T 1epf_A          112 FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ  188 (191)
T ss_dssp             CCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEE
T ss_pred             ecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCeEEECCCChhhCEEEEEEEEEecceeEEEEEEE
Confidence                         5688889999886521              2799999999999999999999997644444343

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.78  E-value=4.6e-17  Score=101.30  Aligned_cols=112  Identities=24%  Similarity=0.312  Sum_probs=87.3

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEE-eCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v----------------   62 (115)
                      |.|+|+|++..+... ..++.... ......|.|.+++.+|+|.|.|.+.+..+....  .|.|                
T Consensus        34 ~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~  112 (305)
T 2nzi_A           34 PIVKWYRQGKEIIAD-GLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMG  112 (305)
T ss_dssp             CEEEEEETTEECCCC-SSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEECEEEEECCCHHHHSSC
T ss_pred             CeEEEEECCEEcccC-CCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCCCccceEEEEEecCCccCCCccccccc
Confidence            689999999988651 33444432 344568999999999999999999988766544  3333                


Q ss_pred             ----------------ecccCCcEEEEEeCC---------------eEEEEEec-cCCCCCeeeEEEeecCccceeeEEE
Q psy3272          63 ----------------SVSVSDRRLMETRGN---------------KHTLTIKN-VQSTDFGNYSCVADNNLGRAKKYME  110 (115)
Q Consensus        63 ----------------~g~~~~~~~~~~~~~---------------~~~l~i~~-~~~~d~G~y~C~~~n~~~~~~~~~~  110 (115)
                                      .|.|.+.+.|.+++.               ...|.|.+ +..+|.|.|+|.|.|..|.....+.
T Consensus       113 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~  192 (305)
T 2nzi_A          113 AVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVE  192 (305)
T ss_dssp             CEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEE
T ss_pred             cEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEE
Confidence                            457888888987542               24788999 9999999999999999999888888


Q ss_pred             EEEe
Q psy3272         111 LSEL  114 (115)
Q Consensus       111 l~v~  114 (115)
                      |.|.
T Consensus       193 l~v~  196 (305)
T 2nzi_A          193 LDVA  196 (305)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8764

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.77  E-value=6.7e-17  Score=103.49  Aligned_cols=113  Identities=24%  Similarity=0.444  Sum_probs=88.4

Q ss_pred             CcceEEEEC--CEEeCCC---CCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE-----------
Q psy3272           1 MGMMSWYQD--TFLIEPS---VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL-----------   62 (115)
Q Consensus         1 ~p~v~W~~~--~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v-----------   62 (115)
                      .|.|+|+|+  |..+...   ...++.+........|.|.++..+|+|.|.|.+.+..+....  .|.|           
T Consensus        29 ~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~P~~~~~~~  108 (389)
T 2jll_A           29 IPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQT  108 (389)
T ss_dssp             CCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECCSCC
T ss_pred             CCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCCCcceEEEEEEEeCCEEecCcc
Confidence            368999999  8877541   134555544456789999999999999999999998777655  3433           


Q ss_pred             ----------------ecccCCcEEEEEeCC-----------------eEEEEEeccCCCCCeeeEEEeecCccceeeEE
Q psy3272          63 ----------------SVSVSDRRLMETRGN-----------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM  109 (115)
Q Consensus        63 ----------------~g~~~~~~~~~~~~~-----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~  109 (115)
                                      .|.|.+.+.|.+++.                 ...|.|.++..+|.|.|+|.|.|..|.....+
T Consensus       109 ~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~  188 (389)
T 2jll_A          109 IYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEY  188 (389)
T ss_dssp             EEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEE
T ss_pred             eEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEE
Confidence                            567888899987542                 23699999999999999999999999987777


Q ss_pred             EEEE
Q psy3272         110 ELSE  113 (115)
Q Consensus       110 ~l~v  113 (115)
                      .+.+
T Consensus       189 ~l~v  192 (389)
T 2jll_A          189 ILAL  192 (389)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6655

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.77  E-value=3.6e-17  Score=101.89  Aligned_cols=111  Identities=14%  Similarity=0.179  Sum_probs=85.4

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCCcceeE--------------------
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--------------------   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--------------------   58 (115)
                      .|.+.|++++..+..  ..++.+...  .....|.|.++..+|+|.|.|.+.+.......                    
T Consensus       137 ~~~v~W~~~~~~i~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (312)
T 2y23_A          137 NAKVNYIFNEKEIFE--GPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQR  214 (312)
T ss_dssp             SCEEEEEETTEEECS--SSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCEECee--CCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccc
Confidence            368999999999987  666555433  44567999999999999999988654322211                    


Q ss_pred             ---------------------------EEEEecccCC-cEEEEEeCC-------------eEEEEEeccCCCCCeeeEEE
Q psy3272          59 ---------------------------YMELSVSVSD-RRLMETRGN-------------KHTLTIKNVQSTDFGNYSCV   97 (115)
Q Consensus        59 ---------------------------~~~v~g~~~~-~~~~~~~~~-------------~~~l~i~~~~~~d~G~y~C~   97 (115)
                                                 ...+.|.|.| .+.|.+++.             ...|.|.++..+|.|.|+|.
T Consensus       215 ~~~~~~~~p~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~  294 (312)
T 2y23_A          215 QEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVI  294 (312)
T ss_dssp             HHHHHHHSSEEEEEEEEEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEEEEEE
T ss_pred             cchhhccCCceeecceEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEEE
Confidence                                       1112667777 889977542             25899999999999999999


Q ss_pred             eecCccceeeEEEEEE
Q psy3272          98 ADNNLGRAKKYMELSE  113 (115)
Q Consensus        98 ~~n~~~~~~~~~~l~v  113 (115)
                      |.|..|.....+.|.+
T Consensus       295 a~N~~G~~~~~~~l~i  310 (312)
T 2y23_A          295 LKDDRGKDKSRLKLVD  310 (312)
T ss_dssp             EESTTCCEEEEEEECS
T ss_pred             EEcCCCceeeeeEEEe
Confidence            9999999998888865

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.77  E-value=9.5e-18  Score=100.43  Aligned_cols=102  Identities=20%  Similarity=0.208  Sum_probs=80.4

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v----------------   62 (115)
                      |.|.|++++..+..  .         ....|.|.++..+|+|.|.|.+.+..+....   .+.|                
T Consensus        48 ~~v~W~~~~~~~~~--~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~  116 (218)
T 3k0w_A           48 VQYQWFKMNKEIPN--G---------NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSE  116 (218)
T ss_dssp             SEEEEEETTEECTT--C---------CSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCC
T ss_pred             CEEEEEECCEECCC--C---------CCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccC
Confidence            68999999998876  2         3567999999999999999999987553211   1211                


Q ss_pred             --------------------------ecccCCcEEEEEeCC------eEEEEEeccCCCCCeeeEEEeecCccc-eeeEE
Q psy3272          63 --------------------------SVSVSDRRLMETRGN------KHTLTIKNVQSTDFGNYSCVADNNLGR-AKKYM  109 (115)
Q Consensus        63 --------------------------~g~~~~~~~~~~~~~------~~~l~i~~~~~~d~G~y~C~~~n~~~~-~~~~~  109 (115)
                                                .|.|.+.+.|.+++.      ...|.|.++..+|.|.|+|.|.|..|. .+..+
T Consensus       117 ~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~  196 (218)
T 3k0w_A          117 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKV  196 (218)
T ss_dssp             SSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCSSEEEESSCCGGGCEEEEEEEECSSCEEECCCE
T ss_pred             CCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCCCEEEEeecChhcCEEEEEEEEcCCCCceeeeE
Confidence                                      568888899988653      347999999999999999999998887 55577


Q ss_pred             EEEEe
Q psy3272         110 ELSEL  114 (115)
Q Consensus       110 ~l~v~  114 (115)
                      .|.|.
T Consensus       197 ~l~V~  201 (218)
T 3k0w_A          197 EIIID  201 (218)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            77664

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.77  E-value=1.1e-17  Score=103.38  Aligned_cols=111  Identities=20%  Similarity=0.278  Sum_probs=84.4

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcce-eE---EEEE---------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA-KK---YMEL---------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~---~~~v---------------   62 (115)
                      |.|.|++++..+......++..   .....|.|.++..+|+|.|.|.+.+..+.. ..   .+.|               
T Consensus       130 ~~v~W~~~~~~~~~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~  206 (291)
T 1qz1_A          130 PTIIWKHKGRDVILKKDVRFIV---LSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNA  206 (291)
T ss_dssp             CEEEEEETTSCSSTTCCTTEEE---CTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEE
T ss_pred             CEEEEEECCEEcccCCCceEEE---ccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCccccccccccc
Confidence            6899999998775422333322   234579999999999999999998754322 11   2222               


Q ss_pred             --------------ecccCCcEEEEEeCC-----------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEE
Q psy3272          63 --------------SVSVSDRRLMETRGN-----------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL  111 (115)
Q Consensus        63 --------------~g~~~~~~~~~~~~~-----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l  111 (115)
                                    .|.|.|.+.|.+++.                 ...|.|.++..+|.|.|+|.|.|..|..+..+.|
T Consensus       207 ~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  286 (291)
T 1qz1_A          207 TANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL  286 (291)
T ss_dssp             ETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             ccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEE
Confidence                          568888999987652                 2369999999999999999999999999999999


Q ss_pred             EEeC
Q psy3272         112 SELE  115 (115)
Q Consensus       112 ~v~~  115 (115)
                      .|.+
T Consensus       287 ~V~~  290 (291)
T 1qz1_A          287 KVFA  290 (291)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            8863

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.77  E-value=1.2e-17  Score=97.68  Aligned_cols=110  Identities=32%  Similarity=0.464  Sum_probs=83.1

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v----------------   62 (115)
                      |.|.|++++..+... ..++...  ..+..|.|.+++.+|+|.|.|.+.+..+....   .+.|                
T Consensus        37 ~~i~W~~~~~~~~~~-~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~  113 (192)
T 2iep_A           37 PEISWTRNKILIKLF-DTRYSIR--ENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKII  113 (192)
T ss_dssp             CEEEEEETTEECCTT-CTTEEEE--GGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEEEEECCCCEEEE
T ss_pred             CeEEEEECCEEcccc-CccEEEc--CCccEEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEEeCCccccCCcceEEe
Confidence            689999999987641 3444432  34457999999999999999999987655322   3333                


Q ss_pred             -----------ecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCccce-eeEEEEEEe
Q psy3272          63 -----------SVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRA-KKYMELSEL  114 (115)
Q Consensus        63 -----------~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~-~~~~~l~v~  114 (115)
                                 .|.|.+.+.|..++.            ...|.|.++..+|.|.|+|.|.|..|.. +..+.|.|.
T Consensus       114 ~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  189 (192)
T 2iep_A          114 EGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE  189 (192)
T ss_dssp             TTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEE
Confidence                       567888899987652            2369999999999999999999999986 446777664

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.77  E-value=1.6e-17  Score=112.54  Aligned_cols=109  Identities=19%  Similarity=0.298  Sum_probs=87.4

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v----------------   62 (115)
                      |.++|+++|..+..  ..++.+.  .....|.|.++..+|+|.|.|.+.|..+...+   .|.|                
T Consensus       496 ~~i~W~~~g~~l~~--~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v  571 (642)
T 1e07_A          496 TTYLWWVNGQSLPV--SPRLQLS--NGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSY  571 (642)
T ss_pred             cEEEEEECCEeCCC--CCcEEEc--CCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeE
Confidence            68999999999877  5655442  33568999999999999999999988765422   3333                


Q ss_pred             ------------ecccCCcEEEEEeCC----eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 ------------SVSVSDRRLMETRGN----KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ------------~g~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                                  .|.|.+.+.|.+++.    ...|.|.++..+|.|.|+|.|.|..|....++.|.|.
T Consensus       572 ~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~s~~l~V~  639 (642)
T 1e07_A          572 LSGANLNLSCHSASNPSPQYSWRINGIPQQHTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSIT  639 (642)
T ss_pred             EcCCcEEEEEEeccCCCCeEEEEECCEECccCceEEECcccccCCeEEEEEEEecccCcceeEEEEEE
Confidence                        468888999998764    3579999999999999999999999998777766653

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.76  E-value=2.1e-17  Score=98.47  Aligned_cols=112  Identities=22%  Similarity=0.362  Sum_probs=79.0

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCe--EEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE--------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNK--HTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL--------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v--------------   62 (115)
                      |.|.|+|++..+................  ..|.|.+++.+|+|.|.|.+.+..+....   .+.|              
T Consensus        39 ~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~  118 (217)
T 2vr9_A           39 PTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDT  118 (217)
T ss_dssp             CEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEEEETTEEEECCCEEEEECEECCSCSBCCCCE
T ss_pred             CeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEEEecCCCccccccceEEEEEeCCCcEECCCcc
Confidence            6899999999886521112222111111  12368889999999999999987765432   3333              


Q ss_pred             ---------------ecccCCcEEEEEeCCe--------------------EEEEEeccCCCCCeeeEEEeecCccceee
Q psy3272          63 ---------------SVSVSDRRLMETRGNK--------------------HTLTIKNVQSTDFGNYSCVADNNLGRAKK  107 (115)
Q Consensus        63 ---------------~g~~~~~~~~~~~~~~--------------------~~l~i~~~~~~d~G~y~C~~~n~~~~~~~  107 (115)
                                     .|.|.+.+.|.+++..                    ..|.|.++..+|.|.|+|.|.|..|....
T Consensus       119 ~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~  198 (217)
T 2vr9_A          119 RVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRES  198 (217)
T ss_dssp             EECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEEC
T ss_pred             EEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceecc
Confidence                           4578888999876521                    26999999999999999999999999776


Q ss_pred             EEEEEE
Q psy3272         108 YMELSE  113 (115)
Q Consensus       108 ~~~l~v  113 (115)
                      ...+.+
T Consensus       199 ~~~~lv  204 (217)
T 2vr9_A          199 SYAKLI  204 (217)
T ss_dssp             CCEEEE
T ss_pred             ccEEEE
Confidence            544444

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.76  E-value=1e-17  Score=107.61  Aligned_cols=109  Identities=25%  Similarity=0.338  Sum_probs=86.9

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE-----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL-----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v-----------------   62 (115)
                      |.+.|++++..+... ..++..   .....|.|.++..+|.|.|.|.+.+..+....  .+.|                 
T Consensus       251 ~~~~W~~~~~~~~~~-~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~  326 (403)
T 3laf_A          251 PSFTWLRGEEVIQLR-SKKYSL---LGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYE  326 (403)
T ss_dssp             CEEEEEETTEECCCS-SSSEEE---ETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEECCT
T ss_pred             CeEEEEECCeeccCC-CceEEE---CCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCcceEEec
Confidence            689999999988651 222222   13457999999999999999999988776655  3333                 


Q ss_pred             ----------ecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 ----------SVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ----------~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                                .|.|.+.+.|.+++.            ...|.|.++..+|.|.|+|.|.|..|..+..+.|.|.
T Consensus       327 g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  400 (403)
T 3laf_A          327 SMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP  400 (403)
T ss_dssp             TCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECC
T ss_pred             CCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEe
Confidence                      568888999988653            2369999999999999999999999999999998875

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.76  E-value=5.5e-18  Score=100.87  Aligned_cols=100  Identities=15%  Similarity=0.249  Sum_probs=76.1

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE--------------------
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL--------------------   62 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v--------------------   62 (115)
                      .|.|+|++..+..  .          ...|.|.+++.+|+|.|.|.+.+........+.|                    
T Consensus        39 ~v~W~k~g~~l~~--~----------~~~L~i~~v~~~D~G~Y~C~a~n~~~s~~~~l~V~~~p~~~~~~~~~v~~G~~v  106 (204)
T 3sgj_C           39 STQWFHNESLISS--Q----------ASSYFIDAATVDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPI  106 (204)
T ss_dssp             CEEEEETTEEESC--C----------SSEEEESSCCGGGCEEEEEEETTSBCCCCEEEEEECSSEEEECSCSEEETTCCE
T ss_pred             EEEEEECCEEccc--C----------ccEEEEecccccCCEEEEEEeCCCcccccEEEEEecCceEecCCceeEeCCCcE
Confidence            3999999998876  2          3789999999999999999998754433334444                    


Q ss_pred             ------ecc-cCCcEEEEEeCC-------eEEEEEeccCCCCCeeeEEEeec-CccceeeEEEEEEe
Q psy3272          63 ------SVS-VSDRRLMETRGN-------KHTLTIKNVQSTDFGNYSCVADN-NLGRAKKYMELSEL  114 (115)
Q Consensus        63 ------~g~-~~~~~~~~~~~~-------~~~l~i~~~~~~d~G~y~C~~~n-~~~~~~~~~~l~v~  114 (115)
                            .+. |.+.+.|.+++.       ...|.|.++..+|.|.|+|.|.| ..+..+..+.|.|.
T Consensus       107 ~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~  173 (204)
T 3sgj_C          107 HLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITIT  173 (204)
T ss_dssp             EEEEEEGGGCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EEEEEecCCCCCceEEEEECCcEeecccCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEe
Confidence                  123 456788887664       24699999999999999999999 44456667777764

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.76  E-value=2e-17  Score=105.91  Aligned_cols=109  Identities=25%  Similarity=0.346  Sum_probs=84.2

Q ss_pred             CcceEEEECCEEeCC----CCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE------------
Q psy3272           1 MGMMSWYQDTFLIEP----SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL------------   62 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v------------   62 (115)
                      .|.|+|+|++..+..    ....++..    ....|.|.++..+|+|.|.|.+.|..+....  .|.|            
T Consensus       241 ~p~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~  316 (388)
T 2v5m_A          241 APSFRWYKFIEGTTRKQAVVLNDRVKQ----VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPT  316 (388)
T ss_dssp             CCEEEEEEECTTSSCEEECCCSSSEEE----ETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSE
T ss_pred             CCEEEEEecCCCCcccccccccCceec----ccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCCCc
Confidence            368999997542211    00233221    2457999999999999999999998876655  3333            


Q ss_pred             ---------------ecccCCcEEEEEeCC-----eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          63 ---------------SVSVSDRRLMETRGN-----KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        63 ---------------~g~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                                     .|.|.+.+.|.+++.     ...|.|.++..+|.|.|+|.|.|..|.....+.|.|
T Consensus       317 ~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          317 QTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             EEECTTSCEEEEEEEEEECCCEEEEEETTEECSCCSSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEecCCCCEEEEEEeccccCCeEEEEECCEECccCCCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence                           568889999988763     358999999999999999999999999999988876

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.76  E-value=2.8e-17  Score=101.59  Aligned_cols=110  Identities=24%  Similarity=0.297  Sum_probs=80.9

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE----EEEE---------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK----YMEL---------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~----~~~v---------------   62 (115)
                      |.+.|++++..+......++..   .....|.|.++..+|.|.|.|.+.+..+....    .+.+               
T Consensus       128 ~~v~W~~~~~~~~~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~  204 (291)
T 2wim_A          128 PAVSWLYHNEEVTTISDNRFAM---LANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNA  204 (291)
T ss_dssp             CEEEEECC----CBCCCSSEEE---CTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEEC
T ss_pred             CEEEEEECCccccccCCceEEE---ccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccc
Confidence            6899999998776422334332   23457999999999999999999876543221    2222               


Q ss_pred             --------------ecccCCcEEEEEeCC-------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 --------------SVSVSDRRLMETRGN-------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 --------------~g~~~~~~~~~~~~~-------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                                    .|.|.|.+.|.+++.             ...|.|.++..+|.|.|+|.|.|..|..+..+.|.|.
T Consensus       205 ~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~  283 (291)
T 2wim_A          205 TAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF  283 (291)
T ss_dssp             CSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC-
T ss_pred             eecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEE
Confidence                          467888999988652             2479999999999999999999999999999988875

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.76  E-value=2.2e-17  Score=97.77  Aligned_cols=87  Identities=23%  Similarity=0.433  Sum_probs=72.4

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE----------------------------ecccCCcEEEEEeCC
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL----------------------------SVSVSDRRLMETRGN   77 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v----------------------------~g~~~~~~~~~~~~~   77 (115)
                      ....|.|.+++.+|+|.|.|.+.+..+....  .|.|                            .|.|.+.+.|.+.+.
T Consensus        82 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~  161 (214)
T 3jz7_A           82 GDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSD  161 (214)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECST
T ss_pred             CcccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCC
Confidence            3577999999999999999999987765544  3444                            367888999988431


Q ss_pred             -------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          78 -------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        78 -------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                                   ...|.|.++..+|.|.|+|.|.|..|.....+.|.|.
T Consensus       162 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  211 (214)
T 3jz7_A          162 SQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV  211 (214)
T ss_dssp             TCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             CCccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence                         3489999999999999999999999999999888775

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.75  E-value=8.6e-18  Score=96.85  Aligned_cols=101  Identities=14%  Similarity=0.261  Sum_probs=76.1

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE-------------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL-------------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v-------------------   62 (115)
                      +.+.|+|++..+..  .          ...+.|.+++.+|+|.|.|.+.+........+.|                   
T Consensus        35 ~~~~W~~~g~~~~~--~----------~~~~~~~~~~~~d~G~Y~C~~~~~~~s~~~~l~v~~~~~~~~~~~~~~~~g~~  102 (170)
T 3ry4_A           35 DSIQWFHNGNLIPT--H----------TQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGET  102 (170)
T ss_dssp             SCEEEEETTEECTT--C----------CSSEEEEECCGGGCEEEEEEETTSBCCCCEEEEEECCSEEEECSCSEECTTCC
T ss_pred             ceEEEEECCeEccc--C----------ccceEEEecccccCeEEEEEEeCCCceEeEEEEEECCceEecCCCceeecCCe
Confidence            47999999998876  2          2335567899999999999998754443334443                   


Q ss_pred             --------ecccCCcEEEEEeCC-------eEEEEEeccCCCCCeeeEEEeecCccc-eeeEEEEEEe
Q psy3272          63 --------SVSVSDRRLMETRGN-------KHTLTIKNVQSTDFGNYSCVADNNLGR-AKKYMELSEL  114 (115)
Q Consensus        63 --------~g~~~~~~~~~~~~~-------~~~l~i~~~~~~d~G~y~C~~~n~~~~-~~~~~~l~v~  114 (115)
                              .+.|.+.+.|.+++.       ...|.|.++..+|.|.|+|.+.|..|. .+..+.|.|+
T Consensus       103 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  170 (170)
T 3ry4_A          103 IMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ  170 (170)
T ss_dssp             EEEEEEEGGGCCEEEEEEEETTEEEEEESSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             EEEEEECCCCCCCceEEEEECCeEccccCCCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEEC
Confidence                    224557788887653       357999999999999999999999987 5557777663

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.75  E-value=8.6e-18  Score=109.62  Aligned_cols=110  Identities=14%  Similarity=0.121  Sum_probs=79.1

Q ss_pred             cceEEEECCEEeCCCCCCCEEE-EE-----eCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE-------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLM-ET-----RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL-------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~-~~-----~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v-------------   62 (115)
                      |.|+|+|++..+..  ...+.. ..     ......|.|.++..+|+|.|+|.+.|. ......|.|             
T Consensus       258 p~i~W~k~g~~l~~--~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~-~~~~~~L~V~~~p~i~~~~~~~  334 (423)
T 3qs7_E          258 FGLTWELENKALEE--GNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH-PSQSALVTIVEKGFINATNSSE  334 (423)
T ss_dssp             CCEEEEESSSBCCG--GGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE-EEEEEEEEEESSCEEEEC---C
T ss_pred             cEEEEEECCEEccc--cceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC-CCceEEEEEEeCCcceEcCCCc
Confidence            68999999987754  222111 11     112357999999999999999999887 222224443             


Q ss_pred             ----------------ecccCCcEEEEEeCCeE-----------EEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 ----------------SVSVSDRRLMETRGNKH-----------TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ----------------~g~~~~~~~~~~~~~~~-----------~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                                      .|.|.|.+.|.+++...           .+.+.....+|+|.|+|.|.|..|..+.++.|.|.
T Consensus       335 ~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~  413 (423)
T 3qs7_E          335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR  413 (423)
T ss_dssp             EECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--
T ss_pred             cEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccccccCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEe
Confidence                            57899999999876322           23336677899999999999999999999988875

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.75  E-value=6e-18  Score=100.21  Aligned_cols=109  Identities=20%  Similarity=0.295  Sum_probs=80.6

Q ss_pred             cceEEEECCEEe----------CCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCc--ceeE--EEEE-----
Q psy3272           2 GMMSWYQDTFLI----------EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG--RAKK--YMEL-----   62 (115)
Q Consensus         2 p~v~W~~~~~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~--~~~~--~~~v-----   62 (115)
                      |.|.|++++..+          ......++...    ...|.|.+++.+|+|.|.|.+.+..+  ....  .+.|     
T Consensus        31 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~----~~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~  106 (212)
T 1f97_A           31 PRVEWKFVQGSTTALVCYNSQITAPYADRVTFS----SSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPS  106 (212)
T ss_dssp             EEEEEEEEETTEEEEEEETTEECGGGTTTEEEE----TTEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCC
T ss_pred             cEEEEEECCCceeeEEecCCcccccccCcEEee----ceeEEEcccCcccCeEEEEEEEccCCCcccEEEEEEEEEcCCC
Confidence            679999987542          11113444332    27899999999999999999998755  2222  3333     


Q ss_pred             -----------------------ecccCCcEEEEEeCC-----------------------eEEEEEeccCCCCCeeeEE
Q psy3272          63 -----------------------SVSVSDRRLMETRGN-----------------------KHTLTIKNVQSTDFGNYSC   96 (115)
Q Consensus        63 -----------------------~g~~~~~~~~~~~~~-----------------------~~~l~i~~~~~~d~G~y~C   96 (115)
                                             .|.|.+.+.|..++.                       ...|.|.++..+|.|.|+|
T Consensus       107 ~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  186 (212)
T 1f97_A          107 KPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYC  186 (212)
T ss_dssp             CCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEE
T ss_pred             CcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEE
Confidence                                   457888899987654                       2368999999999999999


Q ss_pred             EeecCccce--eeEEEEEEe
Q psy3272          97 VADNNLGRA--KKYMELSEL  114 (115)
Q Consensus        97 ~~~n~~~~~--~~~~~l~v~  114 (115)
                      .|.|..|..  +..+.|.|.
T Consensus       187 ~a~n~~g~~~~s~~~~l~V~  206 (212)
T 1f97_A          187 QAQNGYGTAMRSEAAHMDAV  206 (212)
T ss_dssp             EEECSSSCCEECCCEEEEEE
T ss_pred             EEccccCCccccceEEEEEE
Confidence            999999987  557777765

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.75  E-value=1.4e-17  Score=96.66  Aligned_cols=99  Identities=15%  Similarity=0.278  Sum_probs=76.3

Q ss_pred             eEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE---------------------
Q psy3272           4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL---------------------   62 (115)
Q Consensus         4 v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v---------------------   62 (115)
                      +.|+|++..+..            ....|.|.+++.+|+|.|.|.+.+........+.|                     
T Consensus        40 ~~W~~~~~~~~~------------~~~~L~i~~~~~~d~G~Y~C~~~n~~~s~~~~l~V~~~~~~~~~~~~~~~~g~~~~  107 (175)
T 1fnl_A           40 TQWFHNESLISS------------QASSYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIH  107 (175)
T ss_dssp             CEEEETTEEEES------------SCSEEEESSCCGGGCEEEEEECSSSCCCCCEEEEEECSSEEEECSCSEEETTCCEE
T ss_pred             eEEEECCEEccC------------CceEEEEeCCCcccCEEEEEEeeCCcccccEEEEEeCCCceeeCCCceecCCCCEE
Confidence            789999987765            35689999999999999999998765444334444                     


Q ss_pred             -----ecccC-CcEEEEEeCC-------eEEEEEeccCCCCCeeeEEEeecCccc-eeeEEEEEEe
Q psy3272          63 -----SVSVS-DRRLMETRGN-------KHTLTIKNVQSTDFGNYSCVADNNLGR-AKKYMELSEL  114 (115)
Q Consensus        63 -----~g~~~-~~~~~~~~~~-------~~~l~i~~~~~~d~G~y~C~~~n~~~~-~~~~~~l~v~  114 (115)
                           .|.++ +.+.|.+++.       ...|.|.++..+|.|.|+|.|.|..+. .+..+.|.|.
T Consensus       108 l~C~~~~~~~~~~~~W~k~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~  173 (175)
T 1fnl_A          108 LRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT  173 (175)
T ss_dssp             EEEEECTTCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EEEEcCCCCCceEEEEEECCeEccCCCCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEe
Confidence                 33444 4888887663       347999999999999999999997664 5567777775

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.75  E-value=1.7e-17  Score=106.14  Aligned_cols=105  Identities=25%  Similarity=0.285  Sum_probs=84.9

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE-----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL-----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v-----------------   62 (115)
                      |.+.|++++..+..  .      .......|.|.++..+|.|.|.|.+.+..+....  .+.|                 
T Consensus       237 ~~i~W~~~~~~~~~--~------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~  308 (382)
T 1cs6_A          237 PQIKWRKLDGSQTS--K------WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADI  308 (382)
T ss_dssp             CEEEEEECCSCCSC--C------CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEEET
T ss_pred             CEEEEEECCccccc--E------EecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccEEcC
Confidence            68999998876543  1      1124568999999999999999999988776554  3333                 


Q ss_pred             ----------ecccCCcEEEEEeCCe-----------EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 ----------SVSVSDRRLMETRGNK-----------HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ----------~g~~~~~~~~~~~~~~-----------~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                                .|.|.+.+.|.+++..           ..|.|.++..+|.|.|+|.|.|..|.....+.|.|.
T Consensus       309 g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          309 GSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             TCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEECCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence                      5688899999886531           269999999999999999999999999999999886

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.75  E-value=1.2e-17  Score=97.05  Aligned_cols=100  Identities=20%  Similarity=0.355  Sum_probs=77.1

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE--------------------
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL--------------------   62 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v--------------------   62 (115)
                      .+.|++++..+..            ....|.|.+++.+|+|.|.|.+.+..+.....+.|                    
T Consensus        36 ~i~W~~~~~~~~~------------~~~~L~i~~v~~~d~G~Y~C~~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~g~~~  103 (176)
T 1f2q_A           36 STKWFHNGSLSEE------------TNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPL  103 (176)
T ss_dssp             CCEEEETTEECSC------------CSSEEEECSCCGGGCEEEEEECTTSSCCCCEEEEEECSSEEEEESCSEEETTSCE
T ss_pred             eEEEEECCeECCC------------CceEEEEeccceecCEEEEEEcCCccccccEEEEEeCcceeecCCcceeeCCCCE
Confidence            5899999988765            35689999999999999999998766544444444                    


Q ss_pred             -------ecccCCcEEEEEeCC-------eEEEEEeccCCCCCeeeEEEeecCccc-eeeEEEEEEe
Q psy3272          63 -------SVSVSDRRLMETRGN-------KHTLTIKNVQSTDFGNYSCVADNNLGR-AKKYMELSEL  114 (115)
Q Consensus        63 -------~g~~~~~~~~~~~~~-------~~~l~i~~~~~~d~G~y~C~~~n~~~~-~~~~~~l~v~  114 (115)
                             .|.|.+.+.|.+++.       ...|.|.++..+|.|.|+|.|.|..+. .+..+.|.|.
T Consensus       104 ~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~  170 (176)
T 1f2q_A          104 FLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI  170 (176)
T ss_dssp             EEEEEEGGGCCEEEEEEEETTEECCSCCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EEEEEecCCCCceEEEEEECCEEEeeecCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEe
Confidence                   235556888887653       458999999999999999999997544 5556777765

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.75  E-value=4.4e-18  Score=107.13  Aligned_cols=111  Identities=24%  Similarity=0.446  Sum_probs=84.9

Q ss_pred             cceEEEECCEEeCCCCCCCE-EEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRR-LMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v----------------   62 (115)
                      |.|.|++++..+..  ..++ ..........|.|.++..+|+|.|.|.+.+..+....  .+.|                
T Consensus       153 ~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~  230 (334)
T 1ry7_B          153 PSISWLKNGREFRG--EHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPA  230 (334)
T ss_dssp             CEEECCBTTBCCCT--TSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSC
T ss_pred             CeEEEEECCEECcc--cccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCC
Confidence            68999999988765  2221 0111234568999999999999999999988766554  3333                


Q ss_pred             ----------------ecccCCcEEEEE----eCC------------------------eEEEEEeccCCCCCeeeEEEe
Q psy3272          63 ----------------SVSVSDRRLMET----RGN------------------------KHTLTIKNVQSTDFGNYSCVA   98 (115)
Q Consensus        63 ----------------~g~~~~~~~~~~----~~~------------------------~~~l~i~~~~~~d~G~y~C~~   98 (115)
                                      .|.|.+.+.|.+    ++.                        ...|.|.++..+|.|.|+|.|
T Consensus       231 ~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a  310 (334)
T 1ry7_B          231 NQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLA  310 (334)
T ss_dssp             CEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEE
T ss_pred             ceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEE
Confidence                            457788889987    221                        026999999999999999999


Q ss_pred             ecCccceeeEEEEEEe
Q psy3272          99 DNNLGRAKKYMELSEL  114 (115)
Q Consensus        99 ~n~~~~~~~~~~l~v~  114 (115)
                      .|..|.....+.|.|.
T Consensus       311 ~N~~G~~~~~~~l~V~  326 (334)
T 1ry7_B          311 GNSIGFSHHSAWLVVL  326 (334)
T ss_dssp             EESSCCEEEEEEEEEE
T ss_pred             eCCCCeEEEEEEEEEE
Confidence            9999999999888886

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.74  E-value=5.5e-17  Score=101.27  Aligned_cols=108  Identities=20%  Similarity=0.282  Sum_probs=83.1

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE-------------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL-------------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v-------------------   62 (115)
                      |.|+|+|++..+..  ..++...  .....|.|.+++.+|+|.|.|.+.+..+.....+.|                   
T Consensus        37 ~~v~W~~~~~~~~~--~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~  112 (317)
T 2y25_A           37 THIVWYKDEREISV--DEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALS  112 (317)
T ss_dssp             CEEEEEETTEEECC--SCC-------CCEEEEETTCCSTTCSCEEEEEESSSCEEEEEECCSTHHHHHHHHHHHHHHHTC
T ss_pred             CEEEEEECCeEcCC--CCcEEEE--CCeEEEEEccCCcccCeEEEEEEECCCCcEEEEEEEEEecCccccccCCceeccc
Confidence            68999999999876  5544332  345799999999999999999999887766554433                   


Q ss_pred             ----------ec----------ccCCcEEEEEeCC---------------eEEEEEeccCCCCCeeeEEEeecCccceee
Q psy3272          63 ----------SV----------SVSDRRLMETRGN---------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKK  107 (115)
Q Consensus        63 ----------~g----------~~~~~~~~~~~~~---------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~  107 (115)
                                .|          .|.+.+.|..++.               ...|.|.++..+|.|.|+|.+.|..|....
T Consensus       113 g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  192 (317)
T 2y25_A          113 ATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQK  192 (317)
T ss_dssp             BCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEE
T ss_pred             CCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEE
Confidence                      22          5788889987652               234999999999999999999999998877


Q ss_pred             EEEEEE
Q psy3272         108 YMELSE  113 (115)
Q Consensus       108 ~~~l~v  113 (115)
                      .+.|.|
T Consensus       193 ~~~l~v  198 (317)
T 2y25_A          193 TVDLSG  198 (317)
T ss_dssp             EEEECH
T ss_pred             EEEEee
Confidence            776643

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.74  E-value=2e-17  Score=97.07  Aligned_cols=92  Identities=15%  Similarity=0.277  Sum_probs=72.1

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEec-CCCCCCeEEEEEeecCCcceeE----------------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKN-VQSTDFGNYSCVADNNLGRAKK----------------------   58 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~y~C~~~~~~~~~~~----------------------   58 (115)
                      |.|+|+|+|..+..  .         ....|.|.+ +..+|+|.|+|.+.+..+....                      
T Consensus        27 ~~i~W~k~g~~l~~--~---------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~~~~~~~~~~~~~~~~   95 (186)
T 1jbj_A           27 ENLKWEKNGQELPQ--K---------HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDA   95 (186)
T ss_dssp             TTCEEEETTEEECS--C---------CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCCSCCCCCCCCCCCCCC
T ss_pred             CceEEEECCEECCC--C---------CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEeccccccccccccccc
Confidence            56999999999876  2         244799999 9999999999999876554211                      


Q ss_pred             ----------------------------EEEE--ecccCCcEEEEEeCC--------eEEEEEeccCCCCCeeeEEEeec
Q psy3272          59 ----------------------------YMEL--SVSVSDRRLMETRGN--------KHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        59 ----------------------------~~~v--~g~~~~~~~~~~~~~--------~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                                                  .+.+  .. |.|.+.|.+++.        ...|.|.++..+|+|.|+|.|.|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~-p~p~i~W~k~g~~i~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N  174 (186)
T 1jbj_A           96 KKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL-TDKTIKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQGAK  174 (186)
T ss_dssp             SCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS-SCSCEEEEETTEECCCSSCCSSCCEEEETTSCCEEEEEEEESS
T ss_pred             ccCCccccccccccccccccceecCCCCeEEEEeeC-CCCeEEEEECCEECcccCCCcceEEECCCCcCcCEEEEEEEEc
Confidence                                        1111  23 678899988763        34799999999999999999999


Q ss_pred             Cccce
Q psy3272         101 NLGRA  105 (115)
Q Consensus       101 ~~~~~  105 (115)
                      ..|..
T Consensus       175 ~~g~~  179 (186)
T 1jbj_A          175 ETSNP  179 (186)
T ss_dssp             CEEEE
T ss_pred             CcCCc
Confidence            99876

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.74  E-value=2.2e-17  Score=110.32  Aligned_cols=110  Identities=14%  Similarity=0.112  Sum_probs=81.9

Q ss_pred             cceEEEECCEEeCCCCCCCEEEE-E-----eCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE-------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLME-T-----RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL-------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~-~-----~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v-------------   62 (115)
                      |.|+|++++..+..  ...+... .     ......|.|.++..+|+|.|.|.+.+. ......|.|             
T Consensus       258 p~i~W~k~g~~l~~--~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~-~~~~~~L~V~~~p~i~~~~~~~  334 (527)
T 3qs9_E          258 FGLTWELENKALEE--GNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH-PSQSALVTIVEKGFINATNSSE  334 (527)
T ss_dssp             CCEEEECSSSCCCG--GGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE-EEEEEEEEEC--CEEECCCSCC
T ss_pred             eEEEEEECCEECCC--CceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC-CCceEEEEEEccCccccccCcc
Confidence            68999999987754  3222111 1     112456999999999999999999886 222223433             


Q ss_pred             ----------------ecccCCcEEEEEeCC-----------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 ----------------SVSVSDRRLMETRGN-----------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ----------------~g~~~~~~~~~~~~~-----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                                      .|.|.|.+.|.+++.           ...|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       335 ~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~  413 (527)
T 3qs9_E          335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR  413 (527)
T ss_dssp             EECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--
T ss_pred             cEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccccCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEe
Confidence                            578999999988652           2379999999999999999999999998888888764

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.74  E-value=2.4e-17  Score=103.22  Aligned_cols=113  Identities=12%  Similarity=0.068  Sum_probs=81.1

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEe---CCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEE--E-----------
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETR---GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YME--L-----------   62 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~--v-----------   62 (115)
                      .|.++|++++..+..  .........   ...+.|.|.....+|.|.|+|.+.+..+....  .+.  |           
T Consensus       147 ~~~i~W~~~~~~~~~--~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~  224 (313)
T 4fqp_A          147 PAQITWHSDLGGMPN--TSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGY  224 (313)
T ss_dssp             CCEEEEEETTCCEEE--EEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECC
T ss_pred             CcEEEeecCCccccc--cceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccc
Confidence            368999999876643  111100000   01346888888899999999999876543322  111  1           


Q ss_pred             -----------------ecccCC-cEEEEEeCC---------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEeC
Q psy3272          63 -----------------SVSVSD-RRLMETRGN---------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE  115 (115)
Q Consensus        63 -----------------~g~~~~-~~~~~~~~~---------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~~  115 (115)
                                       .|.|.| .+.|.+++.         ...|.|.++..+|+|.|+|.|.|..|..+..+.|.|.+
T Consensus       225 ~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  304 (313)
T 4fqp_A          225 DNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKE  304 (313)
T ss_dssp             CSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             cceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCceEEeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence                             578888 588988663         23799999999999999999999999999999888863

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.74  E-value=7.5e-17  Score=100.79  Aligned_cols=108  Identities=25%  Similarity=0.352  Sum_probs=82.9

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee-cCCcceeE---EEE--E-------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD-NNLGRAKK---YME--L-------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~-~~~~~~~~---~~~--v-------------   62 (115)
                      |.|+|+|++.++... ..++..    ....|.|.++..+|+|.|.|.+. +..+....   .+.  +             
T Consensus       139 ~~i~W~k~~~~l~~~-~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~  213 (315)
T 1itb_B          139 PKLQWYKDCKPLLLD-NIHFSG----VKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVS  213 (315)
T ss_dssp             CCCEEEETTEECCCC-SSSEEE----ETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECS
T ss_pred             CEEEEEECCEECCCc-cceEee----cCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEec
Confidence            689999999988651 222221    24489999999999999999999 56555421   111  1             


Q ss_pred             --------------------ecccCCcEEEEEeCC---------------------------eEEEEEeccCCCC-Ceee
Q psy3272          63 --------------------SVSVSDRRLMETRGN---------------------------KHTLTIKNVQSTD-FGNY   94 (115)
Q Consensus        63 --------------------~g~~~~~~~~~~~~~---------------------------~~~l~i~~~~~~d-~G~y   94 (115)
                                          .|.|.|.+.|.+++.                           ...|.|.++..+| .|.|
T Consensus       214 ~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y  293 (315)
T 1itb_B          214 PANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPF  293 (315)
T ss_dssp             CCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCE
T ss_pred             CCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCce
Confidence                                568888899987542                           1279999999999 9999


Q ss_pred             EEEeecCccceeeEEEEEEe
Q psy3272          95 SCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        95 ~C~~~n~~~~~~~~~~l~v~  114 (115)
                      +|.|.|..|.....+.|.|.
T Consensus       294 ~C~a~N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          294 TCFAKNTHGIDAAYIQLIYP  313 (315)
T ss_dssp             EEEEECTTCCEEEEEEEECC
T ss_pred             EEEEecCCCceeEEEEEEec
Confidence            99999999999999888774

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.74  E-value=3e-17  Score=102.29  Aligned_cols=108  Identities=25%  Similarity=0.412  Sum_probs=79.1

Q ss_pred             cceEEEECCEEeCCCC-CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCccee---EEEEE---------------
Q psy3272           2 GMMSWYQDTFLIEPSV-SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK---KYMEL---------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~---~~~~v---------------   62 (115)
                      |.|.|++++..+.... ..++.   ......|.|.++..+|+|.|.|.+.+..+...   ..+.|               
T Consensus       138 ~~v~W~k~~~~~~~~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~  214 (304)
T 2yd9_A          138 PEITWFKDFLPVDPSASNGRIK---QLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMS  214 (304)
T ss_dssp             CEEEEEETTEECCGGGGTTSEE---ECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCC
T ss_pred             CeEEEEECCEECcCCCCcceEE---eCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCc
Confidence            6899999999876410 11222   12345899999999999999999998876543   22222               


Q ss_pred             ---------------ecccCCcEEEEEeCC-----------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 ---------------SVSVSDRRLMETRGN-----------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ---------------~g~~~~~~~~~~~~~-----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                                     .|.|.|.+.|.+++.           ...|.|.++  +|+|.|+|.|.|..|.....+.|.|.
T Consensus       215 ~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~  290 (304)
T 2yd9_A          215 HEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVK  290 (304)
T ss_dssp             BCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSCCBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC--
T ss_pred             eEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCcccccCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEe
Confidence                           568889999988652           224666555  69999999999999999999888875

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.73  E-value=6e-17  Score=100.28  Aligned_cols=108  Identities=20%  Similarity=0.216  Sum_probs=82.6

Q ss_pred             cceEEE-ECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCe-EEEEEeecCCcceeE---EEEE--------------
Q psy3272           2 GMMSWY-QDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFG-NYSCVADNNLGRAKK---YMEL--------------   62 (115)
Q Consensus         2 p~v~W~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~~~~~~---~~~v--------------   62 (115)
                      |.|+|+ ++|..+..  ..++...   ....|.|.++..+|+| .|.|.+.+..+....   .+.|              
T Consensus       121 ~~v~W~~~~g~~l~~--~~~~~~~---~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~  195 (290)
T 2o26_X          121 SQYSLIECDGKSLPT--DLTFVPN---PKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPE  195 (290)
T ss_dssp             EEEEEEETTSCCCCT--TCEEEEE---TTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSC
T ss_pred             ceEEEEeCCCcCCCC--CCceeeC---CCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCC
Confidence            789995 57777765  4444332   2357999999999999 999999987544222   3332              


Q ss_pred             -----------------ecccCCc-EEEEEeCCe----------------------EEEEEeccCCCCCeeeEEEeecCc
Q psy3272          63 -----------------SVSVSDR-RLMETRGNK----------------------HTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        63 -----------------~g~~~~~-~~~~~~~~~----------------------~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                                       .|.|.|. +.|.+++..                      ..|.|.++..+|.|.|+|.|.|..
T Consensus       196 ~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~  275 (290)
T 2o26_X          196 TSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTF  275 (290)
T ss_dssp             SBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSS
T ss_pred             CcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCC
Confidence                             4677886 999876633                      369999999999999999999999


Q ss_pred             cceeeEEEEEEe
Q psy3272         103 GRAKKYMELSEL  114 (115)
Q Consensus       103 ~~~~~~~~l~v~  114 (115)
                      |..+..+.|.|.
T Consensus       276 g~~~~~~~l~V~  287 (290)
T 2o26_X          276 GSANVTTTLKVV  287 (290)
T ss_dssp             CEEEEEEEECC-
T ss_pred             CcEEEEEEEEEE
Confidence            999888888875

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.73  E-value=2.9e-17  Score=95.82  Aligned_cols=86  Identities=17%  Similarity=0.287  Sum_probs=69.3

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCCcceeEEEE---E------------------ecccCCcEEEEEeCC-----eEEEE
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME---L------------------SVSVSDRRLMETRGN-----KHTLT   82 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~---v------------------~g~~~~~~~~~~~~~-----~~~l~   82 (115)
                      ...|.|.+++.+|+|.|.|.+.+..+.....+.   +                  .|.|.+.+.|..++.     ...|.
T Consensus        67 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~l~V~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~L~  146 (184)
T 2ny1_B           67 NFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLS  146 (184)
T ss_dssp             BCCEEECSCCGGGCEEEEEEETTEEEEEEEEEEEEEESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEEEESSEEE
T ss_pred             eEEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEecCCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCccccCceEEE
Confidence            456999999999999999999876443222111   1                  467888999987653     34799


Q ss_pred             EeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          83 IKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        83 i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      |.++..+|.|.|+|.|.|..+..+..+.|.|+
T Consensus       147 i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~  178 (184)
T 2ny1_B          147 VSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL  178 (184)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EecCCcCCCeEEEEEEEECCceEEEEEEEEEE
Confidence            99999999999999999999998888888886

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.72  E-value=4.2e-17  Score=98.88  Aligned_cols=85  Identities=20%  Similarity=0.227  Sum_probs=64.6

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCCcce-------eEEEEE-------------------------------ecccCCcE
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNLGRA-------KKYMEL-------------------------------SVSVSDRR   70 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~-------~~~~~v-------------------------------~g~~~~~~   70 (115)
                      ...|.|.+++.+|+|.|.|.+.+..+..       ...|.|                               .|.|.|.+
T Consensus        89 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v  168 (250)
T 2fbo_J           89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANV  168 (250)
T ss_dssp             SCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEE
T ss_pred             cceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCee
Confidence            3579999999999999999999865532       113443                               45688888


Q ss_pred             EEEEeCC------------------------------------eEEEEEeccCCCCCeeeEEEeec---CccceeeEEEE
Q psy3272          71 LMETRGN------------------------------------KHTLTIKNVQSTDFGNYSCVADN---NLGRAKKYMEL  111 (115)
Q Consensus        71 ~~~~~~~------------------------------------~~~l~i~~~~~~d~G~y~C~~~n---~~~~~~~~~~l  111 (115)
                      .|.+++.                                    ...|.|.++..+|.|.|+|.|.|   ..+.....+.|
T Consensus       169 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l  248 (250)
T 2fbo_J          169 TWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTIL  248 (250)
T ss_dssp             EEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEE
T ss_pred             EEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccceeEEE
Confidence            9987631                                    14799999999999999999999   55556666666


Q ss_pred             EE
Q psy3272         112 SE  113 (115)
Q Consensus       112 ~v  113 (115)
                      .|
T Consensus       249 ~V  250 (250)
T 2fbo_J          249 KV  250 (250)
T ss_dssp             EC
T ss_pred             eC
Confidence            54

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.72  E-value=3e-16  Score=92.94  Aligned_cols=113  Identities=26%  Similarity=0.378  Sum_probs=77.7

Q ss_pred             cceEEEECCEEeCCCCC-CC-EEEEEeCCe---EEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE-----------
Q psy3272           2 GMMSWYQDTFLIEPSVS-DR-RLMETRGNK---HTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL-----------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~-~~-~~~~~~~~~---~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v-----------   62 (115)
                      |.+.|++++..+..... .+ .........   ..|.|.++..+|+|.|.|.+.+..+....   .+.|           
T Consensus        39 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~  118 (212)
T 2v9r_A           39 PTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNP  118 (212)
T ss_dssp             CEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCC
T ss_pred             CEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEEEEEECCCCceeecceEEEEEeccccceeCC
Confidence            68999999998764211 01 111111111   12345567899999999999987665422   3433           


Q ss_pred             ------------------ecccCCcEEEEEeCCe------------EEEEEeccCCCCCeeeEEEeecCccceee-EEEE
Q psy3272          63 ------------------SVSVSDRRLMETRGNK------------HTLTIKNVQSTDFGNYSCVADNNLGRAKK-YMEL  111 (115)
Q Consensus        63 ------------------~g~~~~~~~~~~~~~~------------~~l~i~~~~~~d~G~y~C~~~n~~~~~~~-~~~l  111 (115)
                                        .|.|.+.+.|.+++..            ..|.|.++..+|.|.|+|.|.|..|.... .+.|
T Consensus       119 ~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l  198 (212)
T 2v9r_A          119 SDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAEL  198 (212)
T ss_dssp             CCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred             CceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEE
Confidence                              3578888999876521            26999999999999999999999998655 4777


Q ss_pred             EEe
Q psy3272         112 SEL  114 (115)
Q Consensus       112 ~v~  114 (115)
                      .|.
T Consensus       199 ~V~  201 (212)
T 2v9r_A          199 TVL  201 (212)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.72  E-value=2.9e-16  Score=93.69  Aligned_cols=109  Identities=21%  Similarity=0.159  Sum_probs=74.6

Q ss_pred             cceEEEEC---CEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE-------------
Q psy3272           2 GMMSWYQD---TFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL-------------   62 (115)
Q Consensus         2 p~v~W~~~---~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v-------------   62 (115)
                      |.|+|+++   +..+..  ..++..   .....|.|.+++.+|+|.|.|.+.+......+   .+.|             
T Consensus        38 ~~v~w~~~~~~g~~~~~--~~~~~~---~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~  112 (213)
T 2x1w_L           38 LNVSLCARYPEKRFVPD--GNRISW---DSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPS  112 (213)
T ss_dssp             CCEEEEEETTTEEECCC--SSSCEE---ETTTEEEEEGGGTTTCSEEEEEEC----CEECCCEEEEECBCCEEEEEEESC
T ss_pred             cEEEEEhhcCCCccccC--CCcccc---cCCccEEEccCChhcCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCC
Confidence            67999984   555554  333322   13456999999999999999999764322211   2221             


Q ss_pred             -----------------eccc--CCcEEEEEeCC-----------------------eEEEEEeccCCCCCeeeEEEeec
Q psy3272          63 -----------------SVSV--SDRRLMETRGN-----------------------KHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        63 -----------------~g~~--~~~~~~~~~~~-----------------------~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                                       .|.|  .+.+.|.+.+.                       ...|.|.++..+|+|.|+|.|.|
T Consensus       113 ~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N  192 (213)
T 2x1w_L          113 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS  192 (213)
T ss_dssp             SCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEec
Confidence                             3433  33577765432                       12499999999999999999999


Q ss_pred             CccceeeEEEEEEeC
Q psy3272         101 NLGRAKKYMELSELE  115 (115)
Q Consensus       101 ~~~~~~~~~~l~v~~  115 (115)
                      ..|..+..+.|.|.+
T Consensus       193 ~~g~~~~~~~l~V~~  207 (213)
T 2x1w_L          193 GLMTKKNSTFVRVHE  207 (213)
T ss_dssp             SSCEEEEEEEEEEEC
T ss_pred             CCCcEEEEEEEEEec
Confidence            999999999998863

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.71  E-value=5.6e-16  Score=96.51  Aligned_cols=106  Identities=24%  Similarity=0.348  Sum_probs=81.4

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE-EE-------------------
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK-YM-------------------   60 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~-~~-------------------   60 (115)
                      .|.|+|+|++.++..  ..++.+........|.|.+++.+|+|.|.|.+.+..+.... .+                   
T Consensus        31 ~~~v~W~k~~~~i~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~s~~l~v~~~~~~~~~~~~~~~p~  108 (312)
T 2y23_A           31 KSEFSWSKDYVSTED--SPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPT  108 (312)
T ss_dssp             TCCEEEEETTEECTT--CTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCEEEEECHHHHHHHHHHHHHHHSCB
T ss_pred             CcEEEEEECCEECCC--CCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEEEEEEEEeeeeeeecccccCCCCc
Confidence            368999999999987  77887776667789999999999999999999875543321 11                   


Q ss_pred             ---------EE------------e-cccCCcEEEEEeCC-----------------eEEEEEeccCCCCCeeeEEEeecC
Q psy3272          61 ---------EL------------S-VSVSDRRLMETRGN-----------------KHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        61 ---------~v------------~-g~~~~~~~~~~~~~-----------------~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                               .+            . |.|.+.+.|.+++.                 ...|.|.++..+|.|.|+|.+.|.
T Consensus       109 ~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  188 (312)
T 2y23_A          109 VPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDG  188 (312)
T ss_dssp             CCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESS
T ss_pred             cccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeC
Confidence                     11            3 67888899987542                 123999999999999999999886


Q ss_pred             ccceeeE
Q psy3272         102 LGRAKKY  108 (115)
Q Consensus       102 ~~~~~~~  108 (115)
                      .+.....
T Consensus       189 ~~~~~~~  195 (312)
T 2y23_A          189 KATNHST  195 (312)
T ss_dssp             SCEEEEE
T ss_pred             CceEEEE
Confidence            5554433

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.71  E-value=3.5e-16  Score=98.70  Aligned_cols=107  Identities=18%  Similarity=0.262  Sum_probs=80.7

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC--CcceeE------EEEE-----------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN--LGRAKK------YMEL-----------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~--~~~~~~------~~~v-----------   62 (115)
                      |.|+|+|++..+... ..++...    ...|.|.++..+|+|.|.|.+.+.  .+....      .+.|           
T Consensus       159 ~~i~W~k~~~~l~~~-~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~  233 (329)
T 3oq3_B          159 NNITWYKNNQELIID-GTKYSQS----GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI  233 (329)
T ss_dssp             CEEEEEETTEECCCS-SSSEEEE----TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE
T ss_pred             ceEEEEECCccCCCC-CceEecC----CCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee
Confidence            789999999988631 3343332    478999999999999999999975  322221      1222           


Q ss_pred             -------------------eccc---CC-cEEEEEeCC--------------------eEEEEEeccCCCCCe-eeEEEe
Q psy3272          63 -------------------SVSV---SD-RRLMETRGN--------------------KHTLTIKNVQSTDFG-NYSCVA   98 (115)
Q Consensus        63 -------------------~g~~---~~-~~~~~~~~~--------------------~~~l~i~~~~~~d~G-~y~C~~   98 (115)
                                         .|.|   .+ .+.|.+++.                    ...|.|.++..+|.| .|+|.|
T Consensus       234 ~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a  313 (329)
T 3oq3_B          234 LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRG  313 (329)
T ss_dssp             CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEE
T ss_pred             cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEE
Confidence                               4555   56 678876542                    346999999999999 999999


Q ss_pred             ecCccceeeEEEEEE
Q psy3272          99 DNNLGRAKKYMELSE  113 (115)
Q Consensus        99 ~n~~~~~~~~~~l~v  113 (115)
                      .|..|.....+.|.|
T Consensus       314 ~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          314 HNYYFDKTLTTTVVL  328 (329)
T ss_dssp             ECSSCEEEEEEEEEE
T ss_pred             EecCCceEEEEEEEe
Confidence            999999888888765

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.71  E-value=3.8e-16  Score=96.43  Aligned_cols=107  Identities=18%  Similarity=0.288  Sum_probs=80.3

Q ss_pred             ceEEEE-CCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC-CcceeE--EEEE----------------
Q psy3272           3 MMSWYQ-DTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN-LGRAKK--YMEL----------------   62 (115)
Q Consensus         3 ~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~-~~~~~~--~~~v----------------   62 (115)
                      .++|++ ++..+..  ..++...   ....|.|.++..+|+|.|.|.+.+. .+....  .+.|                
T Consensus       121 ~v~W~~~~~~~~~~--~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~  195 (289)
T 3ejj_X          121 SVSLMREGGRQVLR--KTVYFFS---PWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSK  195 (289)
T ss_dssp             SEEEEEGGGEECCT--TCCEEEE---TTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSS
T ss_pred             EEEEEecCCeecCC--CccEEEC---CCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCc
Confidence            399987 6666655  5554432   3456999999999999999999843 222222  3332                


Q ss_pred             ---------------ec-ccCCcEEEEEeCC-----------------eEEEEEeccCCCCCeeeEEEeecCccceeeEE
Q psy3272          63 ---------------SV-SVSDRRLMETRGN-----------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM  109 (115)
Q Consensus        63 ---------------~g-~~~~~~~~~~~~~-----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~  109 (115)
                                     .| .|.+.+.|..++.                 ...|.|.++..+|.|.|+|.|.|..|..++.+
T Consensus       196 ~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~  275 (289)
T 3ejj_X          196 LVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATM  275 (289)
T ss_dssp             EECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEE
T ss_pred             eEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccE
Confidence                           34 6788889987652                 45799999999999999999999999999998


Q ss_pred             EEEEe
Q psy3272         110 ELSEL  114 (115)
Q Consensus       110 ~l~v~  114 (115)
                      .|.+.
T Consensus       276 ~L~~~  280 (289)
T 3ejj_X          276 NFQVV  280 (289)
T ss_dssp             EEECC
T ss_pred             EEEEE
Confidence            88764

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.71  E-value=1.7e-17  Score=98.02  Aligned_cols=110  Identities=23%  Similarity=0.331  Sum_probs=79.3

Q ss_pred             cceEEEECCEEe----------CCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCccee--E--EEEE-----
Q psy3272           2 GMMSWYQDTFLI----------EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK--K--YMEL-----   62 (115)
Q Consensus         2 p~v~W~~~~~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~--~--~~~v-----   62 (115)
                      |.|.|++++..+          ......++...    ...|.|.+++.+|+|.|.|.+.+..+...  .  .+.|     
T Consensus        34 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~  109 (209)
T 1nbq_A           34 PRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL----PTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPS  109 (209)
T ss_dssp             EEEEEEEEETTEEEESEETTEECTTTTTTCEEE----TTEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCCC
T ss_pred             cEEEEEEcCCceeEEEEecCccCccccCceEee----ccEEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCCc
Confidence            689999987542          11113343332    27899999999999999999998644221  1  2222     


Q ss_pred             -----------------------ecccCCcEEEEEeCC----------------------eEEEEEeccCCCCCeeeEEE
Q psy3272          63 -----------------------SVSVSDRRLMETRGN----------------------KHTLTIKNVQSTDFGNYSCV   97 (115)
Q Consensus        63 -----------------------~g~~~~~~~~~~~~~----------------------~~~l~i~~~~~~d~G~y~C~   97 (115)
                                             .|.|.+.+.|.+++.                      ...|.|.++..+|.|.|+|.
T Consensus       110 ~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  189 (209)
T 1nbq_A          110 KPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCE  189 (209)
T ss_dssp             CCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEE
T ss_pred             CCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEE
Confidence                                   457888999988641                      24799999999999999999


Q ss_pred             eecCccce--eeEEEEEEeC
Q psy3272          98 ADNNLGRA--KKYMELSELE  115 (115)
Q Consensus        98 ~~n~~~~~--~~~~~l~v~~  115 (115)
                      |.|..|..  +..+.|.|.+
T Consensus       190 a~n~~g~~~~s~~v~l~V~d  209 (209)
T 1nbq_A          190 ARNGYGTPMTSNAVRMEAVE  209 (209)
T ss_dssp             EECSSSCCEECCCBCCEEEC
T ss_pred             EeCCcCcccccccEEEEEeC
Confidence            99999987  5566666653

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.71  E-value=1.8e-16  Score=109.82  Aligned_cols=110  Identities=22%  Similarity=0.268  Sum_probs=86.7

Q ss_pred             cceEEEECCEEeCCCCCCCEEEE-EeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLME-TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v----------------   62 (115)
                      +.|+|+++|..+..  ...+... .......|.|.++..+|+|.|+|.+.|..+....  .+.|                
T Consensus       650 ~~i~W~~~g~~l~~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~v~  727 (816)
T 3dmk_A          650 LNIDWTLDGQAISE--DLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFA  727 (816)
T ss_dssp             CEEEEEETTBCCCG--GGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEEEEECCCCEEEE
T ss_pred             CEEEEEECCeEcCC--CCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCceeeecccceec
Confidence            37999999998865  4343332 3345688999999999999999999998877665  2322                


Q ss_pred             -----------ecccCCcEEEEEeCC------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          63 -----------SVSVSDRRLMETRGN------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        63 -----------~g~~~~~~~~~~~~~------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                                 .|.|.|.+.|.+++.                  ...|.|.++..+|.|.|+|.|.|..|.....+.+..
T Consensus       728 ~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~v~~~~  807 (816)
T 3dmk_A          728 QGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMIS  807 (816)
T ss_dssp             TTCCEEEECEEEEESCCEEECCEECSSSTTCCBCCCCBTTEEEETTEEEECSCCGGGCEEEEEEEECSSSSCEEEEEEEE
T ss_pred             CCCcEEEEEEEecCCCCeEEEEecCCCCCccccccccCCCEEecCCEEEECcCChhhCeEEEEEEEeCCCCCcEEEEEEE
Confidence                       578999999988641                  126999999999999999999999999888776654

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.71  E-value=7.5e-16  Score=89.69  Aligned_cols=102  Identities=18%  Similarity=0.343  Sum_probs=76.7

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE--------------------
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL--------------------   62 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v--------------------   62 (115)
                      .+.|+|++..+..  ....     .....|.|.  ..+|+|.|.|.+.+.. .....+.|                    
T Consensus        31 ~~~W~k~~~~l~~--~~~~-----~~~~~l~i~--~~~d~G~Y~C~~~n~~-~~~~~l~V~~~P~~~~~~~~~~~~~g~~  100 (184)
T 3b5h_A           31 GHRWLKGGVVLKE--DALP-----GQKTEFKVD--SDDQWGEYSCVFLPEP-MGTANIQLHGPPRVKAVKSSEHINEGET  100 (184)
T ss_dssp             EEEEESSSEEEEC--TTCC-----CSEEEEEEC--GGGCCEEEEEEEESTT-SCEEEEEECCSCCCEESCSEEEECTTSC
T ss_pred             EEEEEeCCEEeec--cccc-----CCcEEEEEe--chhhCeEEEEEEECCc-CcEEEEEEecCCceeecCCCcEEcCCCc
Confidence            7999999998875  3221     124556665  5889999999998732 22224444                    


Q ss_pred             -------eccc-CCcEEEEE---eCC------------------eEEEEEeccC-CCCCeeeEEEeecCccceeeEEEEE
Q psy3272          63 -------SVSV-SDRRLMET---RGN------------------KHTLTIKNVQ-STDFGNYSCVADNNLGRAKKYMELS  112 (115)
Q Consensus        63 -------~g~~-~~~~~~~~---~~~------------------~~~l~i~~~~-~~d~G~y~C~~~n~~~~~~~~~~l~  112 (115)
                             .|.| .+.+.|.+   ++.                  ...|.|.++. .+|.|.|+|.|.|..|.....+.|.
T Consensus       101 ~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~  180 (184)
T 3b5h_A          101 AMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR  180 (184)
T ss_dssp             EEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEE
Confidence                   4677 78899988   221                  1379999999 9999999999999999998888888


Q ss_pred             Ee
Q psy3272         113 EL  114 (115)
Q Consensus       113 v~  114 (115)
                      |.
T Consensus       181 V~  182 (184)
T 3b5h_A          181 VR  182 (184)
T ss_dssp             EC
T ss_pred             Ee
Confidence            85

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.71  E-value=5.7e-16  Score=93.01  Aligned_cols=87  Identities=20%  Similarity=0.170  Sum_probs=64.9

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE---------------------------ec-ccCCcEEEEEeCC--
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL---------------------------SV-SVSDRRLMETRGN--   77 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v---------------------------~g-~~~~~~~~~~~~~--   77 (115)
                      ....|.|.+++.+|+|.|.|.+.+..+.....+.+                           .| .|.|.+.|.+++.  
T Consensus        81 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~  160 (226)
T 4f80_A           81 GKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGEN  160 (226)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCB
T ss_pred             CeEEEEEeeCchHHCeeEEEEEECCCcEEEEEEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceE
Confidence            35789999999999999999999987776664444                           33 5888999986431  


Q ss_pred             ---------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          78 ---------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        78 ---------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                                     ...+.+..+..+|.|.|+|.|.|..|..++.+.|.|.
T Consensus       161 ~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~  212 (226)
T 4f80_A          161 IPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIA  212 (226)
T ss_dssp             CCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCC
T ss_pred             cCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEEC
Confidence                           1134455778899999999999999999988888764

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.70  E-value=1.1e-16  Score=94.72  Aligned_cols=85  Identities=12%  Similarity=0.123  Sum_probs=65.3

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE----------------------------ecccCCcEEEEEeCC
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL----------------------------SVSVSDRRLMETRGN   77 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v----------------------------~g~~~~~~~~~~~~~   77 (115)
                      ...|.|.+++.+|+|.|.|.+.+..+....   .+.+                            .|.|.|.+.|.+++.
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~  157 (218)
T 4frw_A           78 DGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVK  157 (218)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSC
T ss_pred             eEEEEEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCc
Confidence            356999999999999999998765443333   1211                            568889999987652


Q ss_pred             ----------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          78 ----------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        78 ----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                                      ...|.|..+...|.|.|+|.|.|..|..+..+.+.|
T Consensus       158 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v  209 (218)
T 4frw_A          158 GTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHIL  209 (218)
T ss_dssp             CEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             ccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEE
Confidence                            236999999999999999999999998666555543

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.70  E-value=1.5e-16  Score=97.41  Aligned_cols=86  Identities=17%  Similarity=0.223  Sum_probs=67.6

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCCcceeE----EEEE-------------------------ecccCCcEEEEEeC---
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNLGRAKK----YMEL-------------------------SVSVSDRRLMETRG---   76 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~----~~~v-------------------------~g~~~~~~~~~~~~---   76 (115)
                      ...|.|.+++.+|+|.|.|.+.+..+....    .+.|                         .+.|.+.+.|.+.+   
T Consensus        83 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~  162 (268)
T 3mj6_A           83 DGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSH  162 (268)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECCCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTC
T ss_pred             EEEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEeccCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCC
Confidence            377999999999999999999875433322    3333                         23577888998731   


Q ss_pred             ------------------------------------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          77 ------------------------------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        77 ------------------------------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                                                          ....|.|.++..+|.|.|+|.|.|..+.....+.|.|.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~  236 (268)
T 3mj6_A          163 TEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVV  236 (268)
T ss_dssp             SSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEE
Confidence                                                23479999999999999999999999998888888874

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.70  E-value=9.5e-17  Score=94.61  Aligned_cols=110  Identities=15%  Similarity=0.173  Sum_probs=75.2

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcc-e-e--EEEEEec-------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR-A-K--KYMELSV-------------   64 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~-~-~--~~~~v~g-------------   64 (115)
                      |.+.|+|++..+..  ... ..........|.|.+++.+|+|.|.|.+.+..+. . .  ..+.|.+             
T Consensus        33 ~~~~w~k~g~~~~~--~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~  109 (196)
T 3p2t_A           33 REYRLDKEESPAPW--DRQ-NPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSP  109 (196)
T ss_dssp             CEEEEEETTSCSCS--EEE-CCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEESCS
T ss_pred             CEEEEEECCCCCcc--ccc-ccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeCCcc
Confidence            67899999986653  110 0001135688999999999999999999987652 1 1  1333310             


Q ss_pred             ---------------ccCCcEEEEEeCC----------------eEEEEEeccCCCCCeeeEEEeecCcc----c-eeeE
Q psy3272          65 ---------------SVSDRRLMETRGN----------------KHTLTIKNVQSTDFGNYSCVADNNLG----R-AKKY  108 (115)
Q Consensus        65 ---------------~~~~~~~~~~~~~----------------~~~l~i~~~~~~d~G~y~C~~~n~~~----~-~~~~  108 (115)
                                     .+.+.+.|.+++.                ...|.|.++..+|+|.|+|.|.|..+    + .+..
T Consensus       110 ~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~  189 (196)
T 3p2t_A          110 LVTSGKSVTLLCQSRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDP  189 (196)
T ss_dssp             EECTTCCEEEEEEEEEEEEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCC
T ss_pred             eecCCCeEEEEEecCCCCCEEEEEeCCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCC
Confidence                           1234566766542                24699999999999999999999986    2 4446


Q ss_pred             EEEEEe
Q psy3272         109 MELSEL  114 (115)
Q Consensus       109 ~~l~v~  114 (115)
                      +.|.|.
T Consensus       190 ~~l~V~  195 (196)
T 3p2t_A          190 LELIVS  195 (196)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            667664

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.70  E-value=7.1e-16  Score=99.09  Aligned_cols=109  Identities=26%  Similarity=0.376  Sum_probs=81.1

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--------------------E--
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--------------------Y--   59 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--------------------~--   59 (115)
                      |.+.|++++.++..  ..+..  .......|.|.++..+|+|.|.|.+.+..+....                    .  
T Consensus       133 ~~~~W~~~~~~~~~--~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~  208 (384)
T 3kld_A          133 LSYAWIFNEYPSYQ--DNRRF--VSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIE  208 (384)
T ss_dssp             EEEEEEETTEECCC--SSSEE--ECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEE
T ss_pred             eEEEEEECCCCCEe--eccEE--EEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCcee
Confidence            57899999987754  33322  1234557999999999999999999886543210                    0  


Q ss_pred             ------E------------EEecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCccceeeEE
Q psy3272          60 ------M------------ELSVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM  109 (115)
Q Consensus        60 ------~------------~v~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~  109 (115)
                            +            .+.|.|.|.+.|.+.+.            ...|.|.++..+|+|.|+|.|.|..|......
T Consensus       209 ~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~  288 (384)
T 3kld_A          209 VQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKG  288 (384)
T ss_dssp             EECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             ecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEE
Confidence                  0            11678999999987432            24799999999999999999999999977776


Q ss_pred             EEEEe
Q psy3272         110 ELSEL  114 (115)
Q Consensus       110 ~l~v~  114 (115)
                      .|.|.
T Consensus       289 ~l~v~  293 (384)
T 3kld_A          289 QLTFY  293 (384)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66653

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.70  E-value=3.1e-16  Score=95.56  Aligned_cols=100  Identities=15%  Similarity=0.241  Sum_probs=79.5

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE--------------------
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL--------------------   62 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v--------------------   62 (115)
                      .++|+|+|..+..            ....|.|.+++.+|+|.|.|.+.+..+.....+.|                    
T Consensus        33 ~~~W~~~g~~~~~------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~s~~~~l~v~~~~~~~~~~~~~~~~g~~v  100 (262)
T 3rjd_A           33 STQWFLNGTATQT------------STPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPL  100 (262)
T ss_dssp             CEEEEETTEECSC------------CSSEEEESSCCGGGCEEEEEEESSSCCCCCEEEEEECSSEEEEESCSEEETTSCE
T ss_pred             eEEEEECCEEeec------------cCCeEEEecCCcccCeEEEEEEecCCccccEEEEEeccceEecCCCeEEecCCeE
Confidence            7999999998865            24568999999999999999998766554444444                    


Q ss_pred             -------ecccCCcEEEEEeCC-------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 -------SVSVSDRRLMETRGN-------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 -------~g~~~~~~~~~~~~~-------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                             .+.|.+.+.|..++.       ...|.|.++..+|.|.|+|.+.|..+.....+.|.|.
T Consensus       101 ~l~C~~~~~~p~~~v~W~~~g~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~  166 (262)
T 3rjd_A          101 ALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVK  166 (262)
T ss_dssp             EEEEEEGGGCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEE
T ss_pred             EEEEEccCCCCCceEEEEECCccccccCCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEec
Confidence                   235666788887653       2368999999999999999999999887777777664

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.70  E-value=4.1e-16  Score=104.21  Aligned_cols=107  Identities=13%  Similarity=0.076  Sum_probs=78.3

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE--EEE----------------
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY--MEL----------------   62 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~--~~v----------------   62 (115)
                      .|.|+|+|+|.++..  ..+.    ......|.|.++..+|+|.|+|.+.|..+.....  |.|                
T Consensus       355 ~p~i~W~k~g~~l~~--~~~~----~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i~~~~~~~~l~  428 (527)
T 3qs9_E          355 QIRCTWTFSRKSFPC--EQKG----LDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQAS  428 (527)
T ss_dssp             CCEEEEEETTEEEEC--BCCB----CSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEEEECCCCE---
T ss_pred             CCEEEEEECCEECcC--Cccc----ccCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeEEEeCCCCEEE
Confidence            378999999998865  3321    1245678999999999999999999988877663  333                


Q ss_pred             ---ecccCCcEEEEEeCC--------------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          63 ---SVSVSDRRLMETRGN--------------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        63 ---~g~~~~~~~~~~~~~--------------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                         .|.|.|.+.|.+.+.                          .....|.-...+|.|.|+|.|.|..|..+..+.|.|
T Consensus       429 C~a~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C~A~N~~G~~~~~~~L~V  508 (527)
T 3qs9_E          429 CFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNS  508 (527)
T ss_dssp             EEEECSSCCEEEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCCSSCSCEEEEEEECSSCEEEEEEEC--
T ss_pred             EEEEEEcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEEcCCCEEEEEEEEeCCCCceeEEEEec
Confidence               578999999964321                          112333333457999999999999999999888765

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.69  E-value=9.9e-16  Score=89.85  Aligned_cols=104  Identities=16%  Similarity=0.239  Sum_probs=74.7

Q ss_pred             cceEEEE--CCEEe----------CCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE----EEEE---
Q psy3272           2 GMMSWYQ--DTFLI----------EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK----YMEL---   62 (115)
Q Consensus         2 p~v~W~~--~~~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~----~~~v---   62 (115)
                      |.|.|+|  ++..+          +.  ..++.+.   ....|.|.+++.+|+|.|.|.+.+..+....    .|.|   
T Consensus        31 ~~i~W~k~~~~~~i~~~~~~~~~~~~--~~R~~~~---~ngsL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~  105 (182)
T 1hnf_A           31 DDIKWEKTSDKKKIAQFRKEKETFKE--KDTYKLF---KNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQER  105 (182)
T ss_dssp             EEEEEEEGGGCCEEEEECGGGCEEES--CTTEEEC---TTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECC
T ss_pred             CEEEEEECCCCcEEEEEeCccCCCCC--CCeEEEC---CCCCEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCc
Confidence            5799999  88776          22  4555442   3458999999999999999999887655422    3433   


Q ss_pred             -------------------ecccCCcEEEEEeCCeE-----EEEEeccCCCCCeeeEEEeecCccceeeEEEE
Q psy3272          63 -------------------SVSVSDRRLMETRGNKH-----TLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL  111 (115)
Q Consensus        63 -------------------~g~~~~~~~~~~~~~~~-----~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l  111 (115)
                                         .+.|.+.+.|..++...     .+.+.. ..+|.|.|+|.|.|..+.......+
T Consensus       106 ~~~P~i~~~~~~v~L~C~~~~~p~~~~~W~~~g~~l~~~~~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~  177 (182)
T 1hnf_A          106 VSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKW-TTSLSAKFKCTAGNKVSKESSVEPV  177 (182)
T ss_dssp             CCCCEEEEETTTTEEEEECSSCSSCEEEEEESSCEEEEESSCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred             CCCCEEEEccCcEEEEeEccCCCCCEEEEEECCEECCCCCcEEEEec-ccCCCcEEEEEEEeCCCCcEEccee
Confidence                               34677889998876432     233332 4789999999999999997776554

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.69  E-value=1.4e-16  Score=94.75  Aligned_cols=105  Identities=17%  Similarity=0.293  Sum_probs=76.3

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCccee-----------------------
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-----------------------   57 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~-----------------------   57 (115)
                      .|.|.|+|+|..+..  .       ......|.|.+++.+|+|.|.|.+.+......                       
T Consensus        29 ~~~i~W~k~g~~l~~--~-------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s~~~~v~v~~~~~~~~~~~~~~~~~~~   99 (204)
T 1sy6_A           29 AKNITWFKDGKMIGF--L-------TEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAK   99 (204)
T ss_dssp             SSEEEEEETTEEEEE--E-------ESSCCCEEEEEGGGCCEEEEEEESSSSCCCCEEEEEEC-----------------
T ss_pred             CCEEEEEECCEECCC--C-------CCCCCeEEeCCCCcCCCEEEEEEecCCCCeeEEEEEEEecccccccccccccccc
Confidence            378999999988764  1       12456799999999999999999754221000                       


Q ss_pred             ----------------------EEEE-------E--ecccCCcEEEEEeCC--------------eEEEEEecc-CCCCC
Q psy3272          58 ----------------------KYME-------L--SVSVSDRRLMETRGN--------------KHTLTIKNV-QSTDF   91 (115)
Q Consensus        58 ----------------------~~~~-------v--~g~~~~~~~~~~~~~--------------~~~l~i~~~-~~~d~   91 (115)
                                            ..+.       +  .|.|.|.+.|.+++.              ...|.|.++ ..+|+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~p~~v~~~G~~v~L~C~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~  179 (204)
T 1sy6_A          100 KDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQS  179 (204)
T ss_dssp             -------------------CCCCEEEEETTEEEEECSCCCSSCEEEEETTEEESCCTTCTTEEEETTEEEETTCCHHHHC
T ss_pred             ccccccccccccccccceecCCceeeecCCcEEEEcCCCCCCceEEEECCEECCCccCCceEecCCCEEEEeeCCccccC
Confidence                                  0111       1  467888888987642              236999999 99999


Q ss_pred             eeeEEEeecCccc-eeeEEEEEEe
Q psy3272          92 GNYSCVADNNLGR-AKKYMELSEL  114 (115)
Q Consensus        92 G~y~C~~~n~~~~-~~~~~~l~v~  114 (115)
                      |.|+|.|.|..|. .+..+.|.|+
T Consensus       180 G~Y~C~A~N~~g~~~s~~l~l~~~  203 (204)
T 1sy6_A          180 GYYVCYPRGSKPEDANFYLYLRAR  203 (204)
T ss_dssp             EEEEEEETTSCGGGSSCEEEEEEC
T ss_pred             EEEEEEeccCCCCceeEEEEEEEe
Confidence            9999999999997 3567666653

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.69  E-value=4.2e-16  Score=97.14  Aligned_cols=102  Identities=23%  Similarity=0.294  Sum_probs=71.3

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEe--CCeEEEEEecCCC-CCCeEEEEEeecCCcceeE--EEEE--------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETR--GNKHTLTIKNVQS-TDFGNYSCVADNNLGRAKK--YMEL--------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~-~d~G~y~C~~~~~~~~~~~--~~~v--------------   62 (115)
                      |.|+|+|+|..+..   .++.....  .....|.|.++.. +|+|.|.|.+.+..+....  .|.|              
T Consensus        36 ~~i~W~k~g~~i~~---~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~  112 (304)
T 2yd9_A           36 PRVTWNKKGKKVNS---QRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNID  112 (304)
T ss_dssp             CEEEEC-------C---TTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCEEEEEEECGGGCCTTCCEEE
T ss_pred             CeEEEEECCEECCC---CceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCCeEEEEEEEEEeccccCCCCCCeee
Confidence            68999999988754   34333222  2347899999997 9999999999987665433  2322              


Q ss_pred             --------------------ecccCCcEEEEEeCC---------------eEEEEEeccCCCCCeeeEEEeecCcccee
Q psy3272          63 --------------------SVSVSDRRLMETRGN---------------KHTLTIKNVQSTDFGNYSCVADNNLGRAK  106 (115)
Q Consensus        63 --------------------~g~~~~~~~~~~~~~---------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~  106 (115)
                                          .|.|.+.+.|.+++.               ...|.|.++..+|.|.|+|.+.|..|...
T Consensus       113 ~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  191 (304)
T 2yd9_A          113 MGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRY  191 (304)
T ss_dssp             ECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEE
Confidence                                457788889987642               12699999999999999999999998754

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.69  E-value=1.3e-16  Score=100.98  Aligned_cols=106  Identities=22%  Similarity=0.418  Sum_probs=66.2

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC-cce---eE--EEEE-------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL-GRA---KK--YMEL-------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~-~~~---~~--~~~v-------------   62 (115)
                      |.|+|+|++.++..  ..++..    .+..|.|.++..+|+|.|.|.+.+.. +..   ..  .+.|             
T Consensus       155 ~~v~W~k~~~~l~~--~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~  228 (349)
T 4dep_C          155 PTITWYMGCYKIQN--FNNVIP----EGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIH  228 (349)
T ss_dssp             CEEEEEETTEECCS--CSSEEE----ETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC
T ss_pred             ceEEEeeCCEECCC--ccceee----cCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEe
Confidence            68999999998865  444332    23679999999999999999998865 332   12  2222             


Q ss_pred             ----------------------e----cccCCcEEEEEeCC-------------------------eEEEEEeccCCCCC
Q psy3272          63 ----------------------S----VSVSDRRLMETRGN-------------------------KHTLTIKNVQSTDF   91 (115)
Q Consensus        63 ----------------------~----g~~~~~~~~~~~~~-------------------------~~~l~i~~~~~~d~   91 (115)
                                            .    |.|.+.+.|.+++.                         ...|.|.++..+|.
T Consensus       229 ~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  308 (349)
T 4dep_C          229 SPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDL  308 (349)
T ss_dssp             ----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC----------
T ss_pred             cCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHc
Confidence                                  2    35778888876542                         12399999999999


Q ss_pred             -eeeEEEeecCccceeeEEEEEE
Q psy3272          92 -GNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        92 -G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                       |.|+|.|.|..|.....+.|.|
T Consensus       309 ~G~Y~C~a~N~~G~~~~~~~l~v  331 (349)
T 4dep_C          309 KRSYVCHARSAKGEVAKAAKVKQ  331 (349)
T ss_dssp             ---CEEEEECSSCEEEEECC---
T ss_pred             CCcEEEEEEcCCCcEEEEEEEee
Confidence             9999999999999888777765

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.69  E-value=8.4e-18  Score=104.91  Aligned_cols=113  Identities=12%  Similarity=0.123  Sum_probs=80.0

Q ss_pred             CcceEEEECCEEeCCCCCCCEEE-EEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEE--E-------------
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLM-ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YME--L-------------   62 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~--v-------------   62 (115)
                      .|.|+|++++.++..  ...... ........|.|..+..+|.|.|+|.+.+..+....  .+.  |             
T Consensus       144 ~~~i~W~~~~~~~~~--~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~  221 (308)
T 4fom_A          144 VAHIDWEGDLGEMES--TTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDG  221 (308)
T ss_dssp             CCEEEECCCSSBCCE--EEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCS
T ss_pred             CceEEEEECCccccc--ccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccce
Confidence            368999999876643  110000 00112357899999999999999999986544332  222  2             


Q ss_pred             ---------------ecccCC-cEEEEEeCC----------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEeC
Q psy3272          63 ---------------SVSVSD-RRLMETRGN----------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE  115 (115)
Q Consensus        63 ---------------~g~~~~-~~~~~~~~~----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~~  115 (115)
                                     .|.|.| .+.|.+++.          ...+.|.++..+|+|.|+|.|.|..|..+..+.|.|.+
T Consensus       222 ~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~  300 (308)
T 4fom_A          222 NWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISD  300 (308)
T ss_dssp             CEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCBCSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEEC
T ss_pred             eeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEEEcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEc
Confidence                           567777 577876542          23567889999999999999999999998888888763

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.69  E-value=3.3e-16  Score=100.62  Aligned_cols=110  Identities=23%  Similarity=0.279  Sum_probs=81.7

Q ss_pred             cceEEEECCEEeCCCC-CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE---------------
Q psy3272           2 GMMSWYQDTFLIEPSV-SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL---------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v---------------   62 (115)
                      |.++|+|++..+.... ..+..   ......|.|.++..+|+|.|.|.+.+..+....   .+.|               
T Consensus       151 ~~v~W~~~~~~~~~~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~  227 (403)
T 3laf_A          151 PTIHWQKNQQDLNPIPGDSRVV---VLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQR  227 (403)
T ss_dssp             CEEEEEESSSBCCCCTTCCSEE---ECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEEC
T ss_pred             CeEEEEECCEeccccCCceEEE---EcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecC
Confidence            5899999998774311 22222   234567999999999999999999876544221   2222               


Q ss_pred             ------------------ecccCCcEEEEEeCC-------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEE
Q psy3272          63 ------------------SVSVSDRRLMETRGN-------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL  111 (115)
Q Consensus        63 ------------------~g~~~~~~~~~~~~~-------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l  111 (115)
                                        .|.|.+.+.|.+++.             ...|.|.++..+|.|.|+|.+.|..|..+..+.|
T Consensus       228 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  307 (403)
T 3laf_A          228 PSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAEL  307 (403)
T ss_dssp             CCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEE
Confidence                              457888889987552             1369999999999999999999999988888777


Q ss_pred             EEe
Q psy3272         112 SEL  114 (115)
Q Consensus       112 ~v~  114 (115)
                      .|.
T Consensus       308 ~V~  310 (403)
T 3laf_A          308 TVL  310 (403)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.69  E-value=5.4e-16  Score=102.90  Aligned_cols=109  Identities=17%  Similarity=0.236  Sum_probs=82.6

Q ss_pred             eEEEECCEEe--CCCCCCCEEEE---EeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE--------------
Q psy3272           4 MSWYQDTFLI--EPSVSDRRLME---TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL--------------   62 (115)
Q Consensus         4 v~W~~~~~~~--~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v--------------   62 (115)
                      |+|++++..+  ..  ..+....   .......|.|.++..+|+|.|.|.+.+..+....  .|.|              
T Consensus       244 i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~  321 (524)
T 2ec8_A          244 STWKRENSQTKLQE--KYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINT  321 (524)
T ss_dssp             EEEEETTCSCCCCE--EEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCS
T ss_pred             EEEEeCCCCCcccc--ccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCc
Confidence            9999999873  22  1111111   0123578999999999999999999988776655  3333              


Q ss_pred             ----------------ecccCCc-EEEEEeCC--------------------eEEEEEeccCCCCCeeeEEEeecCccce
Q psy3272          63 ----------------SVSVSDR-RLMETRGN--------------------KHTLTIKNVQSTDFGNYSCVADNNLGRA  105 (115)
Q Consensus        63 ----------------~g~~~~~-~~~~~~~~--------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~  105 (115)
                                      .|.|.|. +.|.+++.                    ...|.|.++..+|.|.|+|.|.|..|..
T Consensus       322 ~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  401 (524)
T 2ec8_A          322 TVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNA  401 (524)
T ss_dssp             EEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             eEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceE
Confidence                            5678888 99987542                    2479999999999999999999999998


Q ss_pred             eeEEEEEEe
Q psy3272         106 KKYMELSEL  114 (115)
Q Consensus       106 ~~~~~l~v~  114 (115)
                      +..+.|.|.
T Consensus       402 ~~~~~l~V~  410 (524)
T 2ec8_A          402 AIAFNVYVN  410 (524)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEe
Confidence            888888764

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.68  E-value=1.9e-15  Score=93.35  Aligned_cols=102  Identities=24%  Similarity=0.417  Sum_probs=76.8

Q ss_pred             cceEEEE-CCEEeCCCCCCCEEEE-EeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE--------------
Q psy3272           2 GMMSWYQ-DTFLIEPSVSDRRLME-TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL--------------   62 (115)
Q Consensus         2 p~v~W~~-~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v--------------   62 (115)
                      |.|+|++ +|..+... ..++... .......|.|.+++.+|+|.|.|.+.+..+....   .+.|              
T Consensus        33 ~~i~W~~~~g~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~  111 (291)
T 1qz1_A           33 KDISWFSPNGEKLSPN-QQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQE  111 (291)
T ss_dssp             CEEEEECTTSCBCCSS-CSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCSEEEECCSSEE
T ss_pred             cEeEEECCCCeECccC-CceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEEEEEEEeeccccccCCCCccc
Confidence            6899999 77766541 3444432 2356789999999999999999999987754322   3333              


Q ss_pred             -------------ecccCCcEEEEEeCC--------------eEEEEEeccCCCCCeeeEEEeecCccc
Q psy3272          63 -------------SVSVSDRRLMETRGN--------------KHTLTIKNVQSTDFGNYSCVADNNLGR  104 (115)
Q Consensus        63 -------------~g~~~~~~~~~~~~~--------------~~~l~i~~~~~~d~G~y~C~~~n~~~~  104 (115)
                                   .|.|.+.+.|.+++.              ...|.|.++..+|.|.|+|.+.|..+.
T Consensus       112 ~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  180 (291)
T 1qz1_A          112 FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG  180 (291)
T ss_dssp             EETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGT
T ss_pred             ccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEEEccCccccCeEEEEEEEecCCC
Confidence                         467888899987652              236999999999999999999997644

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.68  E-value=6.5e-17  Score=102.82  Aligned_cols=109  Identities=20%  Similarity=0.248  Sum_probs=82.6

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCe-EEEEEeecCCcceeEE---------------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFG-NYSCVADNNLGRAKKY---------------------   59 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~~~~~~~---------------------   59 (115)
                      |.|.|++++..+... ...   ........|.|.+++.+|+| .|.|.+.+..+.....                     
T Consensus       188 p~i~W~~~~~~~~~~-~~~---~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i~~~~~~~g~~  263 (347)
T 2ifg_A          188 EQAGWILTELEQSAT-VMK---SGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHH  263 (347)
T ss_dssp             CCCCEEESCCCSSEE-ECC---CCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEEEEECCCEESSS
T ss_pred             CEEEEEcCCceeecc-ccc---ceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCeeeeccCccCce
Confidence            689999998654321 000   01235778999999999999 9999998765443321                     


Q ss_pred             ----EEEecccCCcEEEEEeCC----------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          60 ----MELSVSVSDRRLMETRGN----------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        60 ----~~v~g~~~~~~~~~~~~~----------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                          ..+.|.|.|.+.|.+++.                      ...|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus       264 v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  343 (347)
T 2ifg_A          264 WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF  343 (347)
T ss_dssp             EEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECS
T ss_pred             EEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEe
Confidence                112678999999987542                      234999999999999999999999999999988877


Q ss_pred             e
Q psy3272         114 L  114 (115)
Q Consensus       114 ~  114 (115)
                      .
T Consensus       344 ~  344 (347)
T 2ifg_A          344 M  344 (347)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.68  E-value=9.8e-16  Score=103.77  Aligned_cols=102  Identities=23%  Similarity=0.403  Sum_probs=81.2

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v----------------   62 (115)
                      |.++|+++|..++.  ..++...  .....|.|.++..+|+|.|.|.+.+..+...+   .+.|                
T Consensus       318 ~~v~W~~~g~~l~~--~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~  393 (642)
T 1e07_A          318 TTYLWWVNNQSLPV--SPRLQLS--NDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYY  393 (642)
T ss_pred             ccEEEEECCccCCC--cCCEEEe--CCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEe
Confidence            57999999998876  5555442  34578999999999999999999988765432   3333                


Q ss_pred             ------------ecccCCcEEEEEeCC----eEEEEEeccCCCCCeeeEEEeecCccceee
Q psy3272          63 ------------SVSVSDRRLMETRGN----KHTLTIKNVQSTDFGNYSCVADNNLGRAKK  107 (115)
Q Consensus        63 ------------~g~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~  107 (115)
                                  .|.|.+.+.|.+++.    ...|.|.++..+|.|.|+|.|.|..|....
T Consensus       394 ~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  454 (642)
T 1e07_A          394 RPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSR  454 (642)
T ss_pred             cCCCcEEEEEEcCccCCCeEEEEECCEEcCCCceEEEccCChhhCeEEEEEEEcCCCCCcc
Confidence                        467888999988763    357999999999999999999999987544

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.67  E-value=2.4e-16  Score=92.91  Aligned_cols=98  Identities=12%  Similarity=0.139  Sum_probs=68.6

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCccee----EEEEE---------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK----KYMEL---------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~----~~~~v---------------   62 (115)
                      +.+.|+|++..+..  ... ..........|.|.+++.+|+|.|.|.+.+..+...    ..|.|               
T Consensus        33 ~~~~W~k~g~~~~~--~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~  109 (196)
T 2d3v_A           33 QEYRLVKEGSPEPW--DTQ-NPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSP  109 (196)
T ss_dssp             CEEEEEETTCSSCS--EEE-CCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC----
T ss_pred             cEEEEEECCCCCCc--ccc-cccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEccCCc
Confidence            46899999986643  100 000123578899999999999999999987654221    13333               


Q ss_pred             --------------ecccCCcEEEEEeCC-----------------eEEEEEeccCCCCCeeeEEEeecCcc
Q psy3272          63 --------------SVSVSDRRLMETRGN-----------------KHTLTIKNVQSTDFGNYSCVADNNLG  103 (115)
Q Consensus        63 --------------~g~~~~~~~~~~~~~-----------------~~~l~i~~~~~~d~G~y~C~~~n~~~  103 (115)
                                    .|.| +.+.|.+++.                 ...|.|.+++.+|.|.|+|.|.|..+
T Consensus       110 ~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          110 VVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             -------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             cccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence                          3355 7788877542                 15799999999999999999999765

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.66  E-value=3.3e-16  Score=99.81  Aligned_cols=102  Identities=12%  Similarity=0.101  Sum_probs=77.9

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE----------------
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL----------------   62 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v----------------   62 (115)
                      .|.|+|++++..+..            ....|.|.++..+|+|.|.|.+.+..+....  .+.|                
T Consensus       125 ~~~v~W~~~~~~~~~------------~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~~~~~~~~G~  192 (363)
T 1wio_A          125 SPSVQCRSPRGKNIQ------------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGE  192 (363)
T ss_dssp             CCCEEEECSSSCEEE------------ESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSEEEEEEETBC
T ss_pred             CCeEEEEcCCCcccc------------cceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCCCceEEecCC
Confidence            368999998754321            3568999999999999999999876554443  2322                


Q ss_pred             --------ec-----ccCCcEEEEEeCC---------------------------------eEEEEEeccCCCCCeeeEE
Q psy3272          63 --------SV-----SVSDRRLMETRGN---------------------------------KHTLTIKNVQSTDFGNYSC   96 (115)
Q Consensus        63 --------~g-----~~~~~~~~~~~~~---------------------------------~~~l~i~~~~~~d~G~y~C   96 (115)
                              .|     .|.|.+.|.+++.                                 ...|.|.++..+|+|.|+|
T Consensus       193 ~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C  272 (363)
T 1wio_A          193 QVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNL  272 (363)
T ss_dssp             CEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEE
T ss_pred             EEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEE
Confidence                    33     5677888876541                                 2279999999999999999


Q ss_pred             EeecC--ccceeeEEEEEEe
Q psy3272          97 VADNN--LGRAKKYMELSEL  114 (115)
Q Consensus        97 ~~~n~--~~~~~~~~~l~v~  114 (115)
                      .|.|.  .|.....+.|.|.
T Consensus       273 ~a~n~~~~g~~~~~~~l~V~  292 (363)
T 1wio_A          273 TLALEAKTGKLHQEVNLVVM  292 (363)
T ss_dssp             EECBTTTTCCEEEEEEEEEE
T ss_pred             EEEEhhhcCeEEEEEeEEEE
Confidence            99999  8988888888774

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.66  E-value=5.1e-15  Score=88.26  Aligned_cols=108  Identities=19%  Similarity=0.245  Sum_probs=78.6

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEec---------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSV---------------   64 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g---------------   64 (115)
                      |.|.|+|+|..+......++.+........|.|.++..+|+|.|.|.+.|..+....  .+.|.+               
T Consensus        48 p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~  127 (215)
T 3mtr_A           48 ATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQVEPYSS  127 (215)
T ss_dssp             CEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEEEEEECCCCCCCEEEEEEEETT
T ss_pred             CEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCceEEEEEEEECCCCCCCcceEEEEecc
Confidence            689999999998763235666655567889999999999999999999998887766  343311               


Q ss_pred             --------------ccCCc--EEEEEeCCe---------------EEEEEeccCCCCCeeeEEEeecCccceeeEE
Q psy3272          65 --------------SVSDR--RLMETRGNK---------------HTLTIKNVQSTDFGNYSCVADNNLGRAKKYM  109 (115)
Q Consensus        65 --------------~~~~~--~~~~~~~~~---------------~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~  109 (115)
                                    .|...  +.|...+..               ..+.|.++...+.|.|+|.|.|..|....+.
T Consensus       128 ~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~  203 (215)
T 3mtr_A          128 TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISA  203 (215)
T ss_dssp             EEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCC
T ss_pred             eEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCccc
Confidence                          11111  222222210               4689999999999999999999999855433

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.66  E-value=3e-15  Score=92.49  Aligned_cols=101  Identities=25%  Similarity=0.403  Sum_probs=78.4

Q ss_pred             cceEEEE-CCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE---------------
Q psy3272           2 GMMSWYQ-DTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL---------------   62 (115)
Q Consensus         2 p~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v---------------   62 (115)
                      +.|.|++ +|..+..  ..++..........|.|.++..+|+|.|.|.+.+..+....   .+.|               
T Consensus        33 ~~v~W~~~~g~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v  110 (291)
T 2wim_A           33 ESIDWYNPQGEKIIS--TQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEF  110 (291)
T ss_dssp             SEEECBCTTCCBCCC--BTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSCCCSEEE
T ss_pred             CceEEECCCCcCccC--CCcEEEecCCCEEEEEEccCCcccCEEEEEEEecccCceEEEEEEEEecCCcceEeCCCChhh
Confidence            4799999 6777766  66776666666789999999999999999999987766533   3433               


Q ss_pred             ------------ecccCCcEEEEEeCC--------------eEEEEEeccCCCCCeeeEEEeecCccc
Q psy3272          63 ------------SVSVSDRRLMETRGN--------------KHTLTIKNVQSTDFGNYSCVADNNLGR  104 (115)
Q Consensus        63 ------------~g~~~~~~~~~~~~~--------------~~~l~i~~~~~~d~G~y~C~~~n~~~~  104 (115)
                                  .|.|.+.+.|..++.              ...|.|.++..+|.|.|+|.+.|..+.
T Consensus       111 ~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~  178 (291)
T 2wim_A          111 KQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARG  178 (291)
T ss_dssp             ETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEETTCCGGGCEEEEEEEEETTTT
T ss_pred             cCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEEEecchhhCEEEEEEEEECCCC
Confidence                        456778888876542              225999999999999999999998754

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.66  E-value=3.9e-16  Score=92.75  Aligned_cols=85  Identities=15%  Similarity=0.186  Sum_probs=62.4

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE----------------------------ecccCCcEEEEEeCC
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL----------------------------SVSVSDRRLMETRGN   77 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v----------------------------~g~~~~~~~~~~~~~   77 (115)
                      ...|.|.+++.+|+|.|.|.+.+..+....   .+.+                            .+.|.+.+.|..++.
T Consensus        82 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~  161 (225)
T 4fmk_A           82 DATLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLG  161 (225)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSC
T ss_pred             cEEEEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCc
Confidence            467999999999999999999876554443   1222                            346777777765432


Q ss_pred             ------------------eEEEEEeccCCCCCeeeEEEeecCccceee--EEEEEE
Q psy3272          78 ------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSE  113 (115)
Q Consensus        78 ------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~--~~~l~v  113 (115)
                                        .+.|.|..+...|.|.|+|.|.|..+....  .+.|.|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V  217 (225)
T 4fmk_A          162 GEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSV  217 (225)
T ss_dssp             CEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCB
T ss_pred             cccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEE
Confidence                              135999999999999999999999887544  444443

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.65  E-value=7.5e-16  Score=92.53  Aligned_cols=110  Identities=15%  Similarity=0.094  Sum_probs=72.2

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeE--EEEEecCCCCCCeEEEEEeecCCccee----EEEEE-------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKH--TLTIKNVQSTDFGNYSCVADNNLGRAK----KYMEL-------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~y~C~~~~~~~~~~----~~~~v-------------   62 (115)
                      |.+.|+|+|..+..  .... ........  .|.|.+++.+|+|.|.|.+.+..+...    ..+.|             
T Consensus        37 ~~~~W~k~g~~~~~--~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p  113 (218)
T 1uct_A           37 YLTQLMIIKNSTYR--EIGR-RLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADR  113 (218)
T ss_dssp             SEEEEEEEETTEEE--ECSE-ECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEESS
T ss_pred             CEEEEEECCCcccc--cccc-cCCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEeCC
Confidence            67999999875543  1110 00011234  899999999999999999998643211    13333             


Q ss_pred             ----------------ecccCCcEEEEEeCC-----------eEEEEEeccCCCCCeeeEEEeecCcc-----ceeeEEE
Q psy3272          63 ----------------SVSVSDRRLMETRGN-----------KHTLTIKNVQSTDFGNYSCVADNNLG-----RAKKYME  110 (115)
Q Consensus        63 ----------------~g~~~~~~~~~~~~~-----------~~~l~i~~~~~~d~G~y~C~~~n~~~-----~~~~~~~  110 (115)
                                      .+.+.+.+.|.+++.           ...|.|.+++.+|+|.|+|.|.|...     ..+..+.
T Consensus       114 ~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~  193 (218)
T 1uct_A          114 GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALE  193 (218)
T ss_dssp             CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEE
T ss_pred             CCccCCCCCEEEEEeCCCCCCCEEEEEECCCcccccccCCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEE
Confidence                            224556778877652           35799999999999999999998632     2334566


Q ss_pred             EEEe
Q psy3272         111 LSEL  114 (115)
Q Consensus       111 l~v~  114 (115)
                      |.|.
T Consensus       194 l~V~  197 (218)
T 1uct_A          194 LVVT  197 (218)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            6653

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.65  E-value=3.9e-16  Score=98.06  Aligned_cols=86  Identities=16%  Similarity=0.263  Sum_probs=70.4

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCCcceeEE--EEE----------------------------ecccCCc-EEEEEeCC
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKY--MEL----------------------------SVSVSDR-RLMETRGN   77 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~--~~v----------------------------~g~~~~~-~~~~~~~~   77 (115)
                      ...|.|..+..+|.|.|+|.+.+..+.....  +.|                            .|.|.|. +.|..++.
T Consensus       193 ~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~  272 (331)
T 3u83_A          193 ISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNG  272 (331)
T ss_dssp             EEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTB
T ss_pred             EEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCC
Confidence            3568899999999999999999887655442  222                            5688887 99988653


Q ss_pred             ---------eEEEEEe-ccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          78 ---------KHTLTIK-NVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        78 ---------~~~l~i~-~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                               ...|.|. ++..+|.|.|+|.|.|..|.....+.|.|.
T Consensus       273 ~~~~~~~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  319 (331)
T 3u83_A          273 SLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT  319 (331)
T ss_dssp             SCCTTEEEETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCB
T ss_pred             cccccceecCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEe
Confidence                     2479999 899999999999999999999999888875

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.65  E-value=2.5e-15  Score=95.76  Aligned_cols=112  Identities=12%  Similarity=0.135  Sum_probs=80.1

Q ss_pred             cceEEEECCEEeCCC------CCCCEEEEE----------eCCeEEEEEecCCCCCCeEEEEEeecC--CcceeE--EEE
Q psy3272           2 GMMSWYQDTFLIEPS------VSDRRLMET----------RGNKHTLTIKNVQSTDFGNYSCVADNN--LGRAKK--YME   61 (115)
Q Consensus         2 p~v~W~~~~~~~~~~------~~~~~~~~~----------~~~~~~l~i~~~~~~d~G~y~C~~~~~--~~~~~~--~~~   61 (115)
                      |.|+|+++|..+...      ...++....          ......|.|.++..+|+|.|.|.+.+.  .+....  .+.
T Consensus       211 p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~  290 (363)
T 1wio_A          211 GELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLV  290 (363)
T ss_dssp             EEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEE
T ss_pred             eeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEE
Confidence            689999999876541      022232221          112448999999999999999999998  776555  333


Q ss_pred             E--------------ecccCCc--EEEEEeCC----eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          62 L--------------SVSVSDR--RLMETRGN----KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        62 v--------------~g~~~~~--~~~~~~~~----~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      |              .|.|.|.  +.|.+++.    ...|.|.++..+|.|.|+|.|.|. |.......+.|.
T Consensus       291 V~~v~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V~  362 (363)
T 1wio_A          291 VMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKVL  362 (363)
T ss_dssp             EEEECCCSSSEEEEEESSCCTTCCEEEECSSSSCSEEESSSEEEESSCCSEEEEEEECSS-SSCCEEEEEEEC
T ss_pred             EEEecCCCeeEEEEEccccCCCccEEEEeCCCceeeeeeeeeeeeccccceeEEEEEecC-CeEEEecceEec
Confidence            3              5677887  89988763    346889999999999999999974 454555556553

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.65  E-value=1.7e-15  Score=95.58  Aligned_cols=109  Identities=17%  Similarity=0.166  Sum_probs=79.2

Q ss_pred             cceEEEECCEEe--CCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE---------------
Q psy3272           2 GMMSWYQDTFLI--EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL---------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v---------------   62 (115)
                      |.|.|+|++..+  ......++..    ....|.|.+++.+|+|.|.|.+.+..+....  .|.|               
T Consensus        55 ~~v~W~k~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~  130 (339)
T 3o4o_C           55 INLTWHKNDSARTVPGEEETRMWA----QDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQ  130 (339)
T ss_dssp             CBCCCEESSCCSCCSCCSSSCEEE----ETTEEEESSBCTTCCEEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEE
T ss_pred             ceEEEEECCCCcccCccccccEEe----eCCeEEECCCCcccCEEEEEEEECCcceEEEEEEEEEEcCCCccccccccce
Confidence            589999999874  3311223322    2457999999999999999999987765544  3443               


Q ss_pred             -------------------ecccCCcEEEEEeCC--------------eEEEEEeccCCCCCeeeEEEeecCccc----e
Q psy3272          63 -------------------SVSVSDRRLMETRGN--------------KHTLTIKNVQSTDFGNYSCVADNNLGR----A  105 (115)
Q Consensus        63 -------------------~g~~~~~~~~~~~~~--------------~~~l~i~~~~~~d~G~y~C~~~n~~~~----~  105 (115)
                                         .|.|.+.+.|.+++.              ...|.|.++..+|.|.|+|.+.|..|.    .
T Consensus       131 ~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  210 (339)
T 3o4o_C          131 ILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNI  210 (339)
T ss_dssp             EEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEE
T ss_pred             EEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEE
Confidence                               235677888887652              137999999999999999999998873    4


Q ss_pred             eeEEEEEEe
Q psy3272         106 KKYMELSEL  114 (115)
Q Consensus       106 ~~~~~l~v~  114 (115)
                      ...+.|.|.
T Consensus       211 ~~~~~l~V~  219 (339)
T 3o4o_C          211 TRSIELRIK  219 (339)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            556666664

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.64  E-value=4.6e-15  Score=102.80  Aligned_cols=101  Identities=27%  Similarity=0.422  Sum_probs=81.4

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE-----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL-----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v-----------------   62 (115)
                      |.|+|+|+|..+..            ....|.|.++..+|+|.|.|.+.+..+....  .+.|                 
T Consensus       373 ~~v~W~k~g~~~~~------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~i~~~~~~~~  440 (816)
T 3dmk_A          373 KTVSWMKDGKAIGH------------SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEET  440 (816)
T ss_dssp             CEEEEEETTEECSC------------CSSEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCSSCCCEEEEECCCEE
T ss_pred             CEEEEEECCEECCC------------CCCEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEccccCCCceEecCcceE
Confidence            68999999998865            2356999999999999999999987665443  2322                 


Q ss_pred             -------------ecccCCcEEEEEeCC--------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEE
Q psy3272          63 -------------SVSVSDRRLMETRGN--------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM  109 (115)
Q Consensus        63 -------------~g~~~~~~~~~~~~~--------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~  109 (115)
                                   .|.|.+.+.|.+++.                    ...|.|.++..+|.|.|+|.|.|..|.....+
T Consensus       441 v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  520 (816)
T 3dmk_A          441 MEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSA  520 (816)
T ss_dssp             ECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEE
T ss_pred             EcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEE
Confidence                         568888999987542                    12599999999999999999999999988888


Q ss_pred             EEEEe
Q psy3272         110 ELSEL  114 (115)
Q Consensus       110 ~l~v~  114 (115)
                      .|.|.
T Consensus       521 ~l~V~  525 (816)
T 3dmk_A          521 KLNVY  525 (816)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            77764

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.64  E-value=9.2e-15  Score=85.71  Aligned_cols=110  Identities=16%  Similarity=0.159  Sum_probs=73.4

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcce----eEEEEEe--------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA----KKYMELS--------------   63 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~----~~~~~v~--------------   63 (115)
                      +.+.|+|+|..+.......   ........|.|.+++.+|+|.|.|.+.+..+..    ...+.|.              
T Consensus        32 ~~~~w~k~g~~~~~~~~~~---~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~  108 (188)
T 1oll_A           32 VEYQLHFEGSLFAVDRPKP---PERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGP  108 (188)
T ss_dssp             CEEEEEETTEEEEEECCSS---CTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEEESCS
T ss_pred             CEEEEEECCCccccccccc---CCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCeEEECCCC
Confidence            4689999998764210000   011346789999999999999999997643211    1133321              


Q ss_pred             --------------cccCCcEEEEEeCC-----------eEEEEEeccCCCCCeeeEEEeecCcc---ceeeEEEEEEe
Q psy3272          64 --------------VSVSDRRLMETRGN-----------KHTLTIKNVQSTDFGNYSCVADNNLG---RAKKYMELSEL  114 (115)
Q Consensus        64 --------------g~~~~~~~~~~~~~-----------~~~l~i~~~~~~d~G~y~C~~~n~~~---~~~~~~~l~v~  114 (115)
                                    ..+.+.+.|.+++.           ...|.|.++..+|+|.|+|.|.|...   ..+..+.|.|.
T Consensus       109 ~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          109 EVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             EEETTCEEEEEEECSSSCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             ccccCCEEEEEEEcCCCCCEEEEEECCccccccccCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence                          12345677877652           35799999999999999999998642   24446677664

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.64  E-value=1.6e-15  Score=93.70  Aligned_cols=108  Identities=19%  Similarity=0.216  Sum_probs=75.2

Q ss_pred             cceEEEEC-CEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE---------------
Q psy3272           2 GMMSWYQD-TFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL---------------   62 (115)
Q Consensus         2 p~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v---------------   62 (115)
                      |.|+|+++ +..+..  ..++..   .....|.|.++..+|+|.|.|.+.+..+....   .+.|               
T Consensus       120 ~~v~W~~~~~~~~~~--~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~  194 (292)
T 4dkd_C          120 AGVSLVRVRGRPLMR--HTNYSF---SPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPA  194 (292)
T ss_dssp             SSEEEEEGGGCCCCS--SCCEEC---CSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESS
T ss_pred             eeEEEEecCCCcccc--CCcccc---cCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCC
Confidence            67999997 455544  333332   22344999999999999999999976554322   3333               


Q ss_pred             ----------------ecccCC-cEEEEEeCC-----------------eEEEEEeccCCCCCeeeEEEeecCccceeeE
Q psy3272          63 ----------------SVSVSD-RRLMETRGN-----------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKY  108 (115)
Q Consensus        63 ----------------~g~~~~-~~~~~~~~~-----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~  108 (115)
                                      .|.|.+ .+.|..++.                 ...|.|.++..+|.|.|+|.|.|..|..+..
T Consensus       195 ~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~  274 (292)
T 4dkd_C          195 ELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTS  274 (292)
T ss_dssp             CBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEE
T ss_pred             ceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeE
Confidence                            233332 333433321                 1379999999999999999999999999998


Q ss_pred             EEEEEe
Q psy3272         109 MELSEL  114 (115)
Q Consensus       109 ~~l~v~  114 (115)
                      +.|.|.
T Consensus       275 ~~l~V~  280 (292)
T 4dkd_C          275 MFFRVV  280 (292)
T ss_dssp             EEECC-
T ss_pred             EEEEEe
Confidence            888875

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.64  E-value=6.2e-15  Score=87.57  Aligned_cols=111  Identities=22%  Similarity=0.338  Sum_probs=76.0

Q ss_pred             cceEEEECC--EEe----------CCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE----
Q psy3272           2 GMMSWYQDT--FLI----------EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL----   62 (115)
Q Consensus         2 p~v~W~~~~--~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v----   62 (115)
                      |.|.|+|++  ..+          ......++..........|.|.+++.+|+|.|.|.+.+..+....   .+.|    
T Consensus        31 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~  110 (213)
T 3d9a_L           31 NNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRAD  110 (213)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCC
T ss_pred             CCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEEEeeecCCcceeCCCEEEEEecCC
Confidence            679999853  211          111135666555556779999999999999999999876543211   2322    


Q ss_pred             --------------------------ec-ccCC-cEEEEEeCC----------------------eEEEEEeccCCCCCe
Q psy3272          63 --------------------------SV-SVSD-RRLMETRGN----------------------KHTLTIKNVQSTDFG   92 (115)
Q Consensus        63 --------------------------~g-~~~~-~~~~~~~~~----------------------~~~l~i~~~~~~d~G   92 (115)
                                                .| .|.+ .+.|.+++.                      ...|.|.++..+|.|
T Consensus       111 ~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G  190 (213)
T 3d9a_L          111 AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHN  190 (213)
T ss_dssp             BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCC
T ss_pred             CCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCC
Confidence                                      33 4454 688887542                      127999999999999


Q ss_pred             eeEEEeecCccceeeEEEEE
Q psy3272          93 NYSCVADNNLGRAKKYMELS  112 (115)
Q Consensus        93 ~y~C~~~n~~~~~~~~~~l~  112 (115)
                      .|+|.|.|..........+.
T Consensus       191 ~Y~C~a~n~~~~~~~~~~i~  210 (213)
T 3d9a_L          191 SYTCEATHKTSTSPIVKSFN  210 (213)
T ss_dssp             EEEEEEECTTCSSCEEEEEE
T ss_pred             EEEEEEEEccCCCceEEEec
Confidence            99999999887754444443

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.63  E-value=2.7e-15  Score=88.46  Aligned_cols=109  Identities=16%  Similarity=0.203  Sum_probs=73.3

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC-c--cee--EEEEE--------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL-G--RAK--KYMEL--------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~-~--~~~--~~~~v--------------   62 (115)
                      +.+.|+|++..+.......   ........|.|.++..+|+|.|.|.+.+.. +  ...  ..+.|              
T Consensus        33 ~~~~W~k~g~~~~~~~~~~---~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~  109 (198)
T 1ugn_A           33 QEYRLYREKKTAPWITRIP---QELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPS  109 (198)
T ss_dssp             CCEEEEESSSCCHHHHTSC---HHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEESC
T ss_pred             cEEEEEECCcccccccccc---ccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEEEEcccccCCccccCCc
Confidence            3689999988664200000   001245679999999999999999998765 3  111  13333              


Q ss_pred             ---------------ecccCCcEEEEEeCC-----------------eEEEEEeccCCCCCeeeEEEeecCccc-----e
Q psy3272          63 ---------------SVSVSDRRLMETRGN-----------------KHTLTIKNVQSTDFGNYSCVADNNLGR-----A  105 (115)
Q Consensus        63 ---------------~g~~~~~~~~~~~~~-----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~-----~  105 (115)
                                     .|. .+.+.|.+++.                 ...|.|.++..+|.|.|+|.|.|..+.     .
T Consensus       110 ~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~  188 (198)
T 1ugn_A          110 PVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLP  188 (198)
T ss_dssp             SEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCC
T ss_pred             cccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCc
Confidence                           223 56778876542                 257999999999999999999998752     2


Q ss_pred             eeEEEEEEe
Q psy3272         106 KKYMELSEL  114 (115)
Q Consensus       106 ~~~~~l~v~  114 (115)
                      +..+.|.|.
T Consensus       189 S~~~~l~V~  197 (198)
T 1ugn_A          189 SDLLELLVL  197 (198)
T ss_dssp             CCCEEEEEE
T ss_pred             CceEEEEec
Confidence            446667664

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.63  E-value=5.2e-15  Score=93.67  Aligned_cols=109  Identities=23%  Similarity=0.290  Sum_probs=77.0

Q ss_pred             cceEEEECCE------EeC-CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE----------
Q psy3272           2 GMMSWYQDTF------LIE-PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL----------   62 (115)
Q Consensus         2 p~v~W~~~~~------~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v----------   62 (115)
                      |.|.|+|++.      ++. .....++..    ....|.|.+++.+|+|.|.|.+.+..+....  .+.|          
T Consensus        48 ~~i~W~k~~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~  123 (349)
T 4dep_C           48 LTLIWYWTRQDRDLEEPINFRLPENRISK----EKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSP  123 (349)
T ss_dssp             CEEEEEEEESSCCCEEECCCCCGGGCEEE----ETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCS
T ss_pred             ceEEEEECCCCCcccccccccccCceEee----cCCEEEEccCChhhCEEEEEEEecCCceEEEEEEEEEecCCcccCcc
Confidence            7899999874      222 000222221    2457999999999999999999987665554  3433          


Q ss_pred             --------------------------ecccCCcEEEEEeCCe-----------EEEEEeccCCCCCeeeEEEeecCc-cc
Q psy3272          63 --------------------------SVSVSDRRLMETRGNK-----------HTLTIKNVQSTDFGNYSCVADNNL-GR  104 (115)
Q Consensus        63 --------------------------~g~~~~~~~~~~~~~~-----------~~l~i~~~~~~d~G~y~C~~~n~~-~~  104 (115)
                                                .|.|.+.+.|.+++..           ..|.|.++..+|.|.|+|.|.|.. |.
T Consensus       124 ~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~  203 (349)
T 4dep_C          124 MKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGR  203 (349)
T ss_dssp             CCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTE
T ss_pred             cccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCE
Confidence                                      1257788899876521           369999999999999999999987 44


Q ss_pred             e---eeEEEEEEe
Q psy3272         105 A---KKYMELSEL  114 (115)
Q Consensus       105 ~---~~~~~l~v~  114 (115)
                      .   +..+.|.|.
T Consensus       204 ~~~~~~~~~l~v~  216 (349)
T 4dep_C          204 TFHLTRTLTVKVV  216 (349)
T ss_dssp             EEEEEEEEEEEEE
T ss_pred             EEEEEEEEEEEEE
Confidence            3   566666653

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.63  E-value=1e-15  Score=89.47  Aligned_cols=100  Identities=15%  Similarity=0.167  Sum_probs=70.6

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcce----eEEEEEe--------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA----KKYMELS--------------   63 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~----~~~~~v~--------------   63 (115)
                      |.+.|+|++....            .....|.|.+++.+|+|.|.|.+.+..+..    ...+.|.              
T Consensus        36 ~~~~W~k~g~~~~------------~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p~~  103 (184)
T 2gi7_A           36 DLYRLEKLSSSRY------------QDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGP  103 (184)
T ss_dssp             SEEEEEETTTCCE------------ESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEECCC
T ss_pred             CEEEEEECCcccc------------CcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCCCc
Confidence            6789999876411            135689999999999999999998865421    1133330              


Q ss_pred             --------------cccCCcEEEEEeCC-----------eEEEEEeccCCCCCeeeEEEeecCccc-----eeeEEEEEE
Q psy3272          64 --------------VSVSDRRLMETRGN-----------KHTLTIKNVQSTDFGNYSCVADNNLGR-----AKKYMELSE  113 (115)
Q Consensus        64 --------------g~~~~~~~~~~~~~-----------~~~l~i~~~~~~d~G~y~C~~~n~~~~-----~~~~~~l~v  113 (115)
                                    ..+.+.+.|.+++.           ...|.|.++..+|.|.|+|.|.|..+.     .+..+.|.|
T Consensus       104 ~v~~G~~v~l~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  183 (184)
T 2gi7_A          104 AVSSGGDVTLQCQTRYGFDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFSSRDPYLWSAPSDPLELVV  183 (184)
T ss_dssp             SSCCTTCEEEEEECSSCCCEEEEEECCCCTTSCCCCEEEEESSSEEEETTCCSEEEEEEEECTTSTTBCCCCCCCEEEEC
T ss_pred             eecCCCcEEEEEEcCCCCcEEEEEECCCcCcceecCCCceEEEEEccCCccCCeEEEEEEEeCCCCcccCCCCCcEEEEe
Confidence                          12345778877652           346889999999999999999997542     244555554

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.63  E-value=4.1e-15  Score=88.34  Aligned_cols=94  Identities=18%  Similarity=0.166  Sum_probs=68.7

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcc---ee--EEEEE------------------------------
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR---AK--KYMEL------------------------------   62 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~---~~--~~~~v------------------------------   62 (115)
                      ..++..........|.|.+++.+|+|.|.|.+.+..+.   ..  ..+.|                              
T Consensus        58 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~  137 (213)
T 3mj8_L           58 PDHFSGSNSGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCM  137 (213)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEE
T ss_pred             cCcEEEEecCCEEEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEE
Confidence            35666555667889999999999999999999987651   11  13332                              


Q ss_pred             -ecc-cC-CcEEEEEeCCe--------------------EEEEEeccCCCCCeeeEEEeecCccceeeEEEE
Q psy3272          63 -SVS-VS-DRRLMETRGNK--------------------HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL  111 (115)
Q Consensus        63 -~g~-~~-~~~~~~~~~~~--------------------~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l  111 (115)
                       .|. |+ +.+.|.+++..                    ..|.|..+..+|.|.|+|.|.|..+...+.+.+
T Consensus       138 ~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~  209 (213)
T 3mj8_L          138 INGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLSP  209 (213)
T ss_dssp             EEEEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEECC
T ss_pred             eeceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeecc
Confidence             333 33 37888875531                    248899999999999999999999887766543

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.63  E-value=2.3e-15  Score=87.35  Aligned_cols=109  Identities=14%  Similarity=0.131  Sum_probs=73.9

Q ss_pred             cceEEEECCEEeCCC----------CCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE---------
Q psy3272           2 GMMSWYQDTFLIEPS----------VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL---------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v---------   62 (115)
                      |.|.|+|++..+..-          ...|+.+  ......|.|.+++.+|+|.|.|.+.+..+.....|.|         
T Consensus        24 ~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~--~~~~~sL~I~~v~~~DsG~Y~C~~~n~~~~~~~~L~V~~~~~~p~i  101 (171)
T 1ccz_A           24 KEVLWKKQKDKVAELENSEFRAFSSFKNRVYL--DTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMI  101 (171)
T ss_dssp             SCEEEEETTEEEEEEETTEEEECGGGTTSEEE--CTTTCCEEECSCCGGGCEEEEEECTTCCSCEEEEEEEECCCCCCEE
T ss_pred             ceEEEEeCCcEEEEEcCCCcccccccCCcEEE--eCCCCeEEECCCChhhCceEEEEEeCCCCcEEEEEEEECcCCCCEE
Confidence            689999988654210          0123222  2245689999999999999999998776633335554         


Q ss_pred             -------------ecccCCcEEEEEeCCeE----EEEEeccCCCCCeeeEEEeecCccceeeEEEEE
Q psy3272          63 -------------SVSVSDRRLMETRGNKH----TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS  112 (115)
Q Consensus        63 -------------~g~~~~~~~~~~~~~~~----~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~  112 (115)
                                   .|.|.|.+.|..++...    .+.|......|.|.|+|.|.|..+..+..+.|.
T Consensus       102 ~~~~~~~~L~C~~~~~p~p~i~W~~~~~~l~~~~~~~l~~~~~~~~g~Y~C~a~N~~~~~~~~~~l~  168 (171)
T 1ccz_A          102 YWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN  168 (171)
T ss_dssp             EEETTTTEEEEECSSCSSCEEEEEETTEEEEEESSSEEEEECSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred             EEecCCcEEEEEeCCCCCcEEEEEECCEECcCCcceEEEEeccCCCceEEEEEEcccCcccceeEEe
Confidence                         34577888998765321    122333347789999999999999977766543

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.63  E-value=1.4e-14  Score=85.45  Aligned_cols=109  Identities=13%  Similarity=0.191  Sum_probs=74.2

Q ss_pred             cceEEEECCEEeCCC----------CCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCccee-----E--EEEE--
Q psy3272           2 GMMSWYQDTFLIEPS----------VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-----K--YMEL--   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~-----~--~~~v--   62 (115)
                      |.+.|++++..+...          ...+... .......|.|.+++.+|+|.|.|.+.+..+...     .  .|.|  
T Consensus        28 ~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~-~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~  106 (201)
T 1dr9_A           28 TRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIF-DITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKA  106 (201)
T ss_dssp             CEEEEEETTEEEEEEETTEEEECHHHHTTEEE-ESTTTTEEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEEC
T ss_pred             cEEEEEeCCcEEEEEeCCceeecCcccceeEE-ccCCCcEEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcC
Confidence            578999999876210          0122222 123456899999999999999999998654321     1  3333  


Q ss_pred             -------------------------ecccCCcEEEEEeCCe-----------------EEEEEeccCCCCCeeeEEEeec
Q psy3272          63 -------------------------SVSVSDRRLMETRGNK-----------------HTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        63 -------------------------~g~~~~~~~~~~~~~~-----------------~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                                               .|.|.|.+.|.+++..                 ....+..+...|.|.|+|.|.|
T Consensus       107 ~~~~p~~~~~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n  186 (201)
T 1dr9_A          107 DFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKY  186 (201)
T ss_dssp             CCCCCEEEEEECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEE
T ss_pred             CCCCCceEeccCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEec
Confidence                                     3678889999876521                 0112344556899999999999


Q ss_pred             CccceeeEEEE
Q psy3272         101 NLGRAKKYMEL  111 (115)
Q Consensus       101 ~~~~~~~~~~l  111 (115)
                      ..+..+..+.+
T Consensus       187 ~~~~~s~~~~~  197 (201)
T 1dr9_A          187 GHLRVNQTFNW  197 (201)
T ss_dssp             TTCCEEEEEEE
T ss_pred             CcceeeeEEec
Confidence            99998877665

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.63  E-value=9.4e-15  Score=97.96  Aligned_cols=112  Identities=18%  Similarity=0.285  Sum_probs=79.0

Q ss_pred             ceEEEECCEEeC-----C-------CCCCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE----
Q psy3272           3 MMSWYQDTFLIE-----P-------SVSDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL----   62 (115)
Q Consensus         3 ~v~W~~~~~~~~-----~-------~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v----   62 (115)
                      .|.|+|++..+.     .       ....++.+..  ......|.|.+++.+|+|.|.|.+.+..+....  .|.|    
T Consensus        34 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p  113 (585)
T 2ocw_A           34 RKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGP  113 (585)
T ss_pred             cEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCcccCEEEEEEcccCCCCceEEEEEEEecCc
Confidence            789999875321     0       0023443332  233467999999999999999999877655444  3443    


Q ss_pred             -----------------------ec-ccCCcEEEEEeCCe-------------------------------EEEEEeccC
Q psy3272          63 -----------------------SV-SVSDRRLMETRGNK-------------------------------HTLTIKNVQ   87 (115)
Q Consensus        63 -----------------------~g-~~~~~~~~~~~~~~-------------------------------~~l~i~~~~   87 (115)
                                             .| .+.+.+.|.+++..                               ..|.|.++.
T Consensus       114 ~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~  193 (585)
T 2ocw_A          114 GLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLR  193 (585)
T ss_pred             cccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCC
Confidence                                   22 34456788765421                               169999999


Q ss_pred             CCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          88 STDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        88 ~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .+|.|.|+|.+.|..+.....+.|.|.
T Consensus       194 ~~D~G~Y~C~a~n~~g~~~~~~~l~V~  220 (585)
T 2ocw_A          194 LSDAGQYLCQAGDDSNSNKKNADLQVL  220 (585)
T ss_pred             hhHCeEEEEEeccCCccccceEEEEEc
Confidence            999999999999999988778877774

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.62  E-value=4e-15  Score=87.98  Aligned_cols=85  Identities=15%  Similarity=0.251  Sum_probs=63.8

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCCc-ceeE--EEEE----------------------------ecccCCcEEEEEeCC
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNLG-RAKK--YMEL----------------------------SVSVSDRRLMETRGN   77 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~~-~~~~--~~~v----------------------------~g~~~~~~~~~~~~~   77 (115)
                      ...|.|.+++.+|+|.|.|.+.+..+ ....  .+.|                            .|. ++.+.|.+++.
T Consensus        70 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~g~~v~l~C~~~~~-pp~i~W~~~g~  148 (208)
T 3r4d_A           70 NGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDI-GANIQWLFNSQ  148 (208)
T ss_dssp             TSCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSSCCTTCCEEEEEECSCT-TCEEEEEETTE
T ss_pred             CCeEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCceEeeCCCEEEEEECCCC-CCceEEEECCE
Confidence            34799999999999999999988743 2222  3333                            233 36888887542


Q ss_pred             -------------eEEEEEeccCCCCCeeeEEEeecCccceee-EEEEEEe
Q psy3272          78 -------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKK-YMELSEL  114 (115)
Q Consensus        78 -------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~-~~~l~v~  114 (115)
                                   ...|.|.++..+|.|.|+|.|.|..|...+ .+.|.|.
T Consensus       149 ~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~  199 (208)
T 3r4d_A          149 SLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII  199 (208)
T ss_dssp             ECCCCSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC
T ss_pred             eCCCCCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEE
Confidence                         247999999999999999999999998544 6666553

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.62  E-value=4.9e-15  Score=98.33  Aligned_cols=108  Identities=19%  Similarity=0.215  Sum_probs=79.7

Q ss_pred             cceEEEE-CCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCe-EEEEEeecCCcceeE---EEEE--------------
Q psy3272           2 GMMSWYQ-DTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFG-NYSCVADNNLGRAKK---YMEL--------------   62 (115)
Q Consensus         2 p~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~~~~~~---~~~v--------------   62 (115)
                      |.|+|++ +|..+..  ..++...   ....|.|.++..+|+| .|.|.+.+..+...+   .|.|              
T Consensus       144 ~~v~W~~~~g~~l~~--~~~~~~~---~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~  218 (524)
T 2ec8_A          144 TNYSLKGCQGKPLPK--DLRFIPD---PKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSK  218 (524)
T ss_dssp             SCEEEECSSSCCCCS--SCEEEEE---TTTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSC
T ss_pred             ceEEEEccCCcCcCC--CCceeEC---CCccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecC
Confidence            6899998 7877765  5544432   3457999999999999 999999876543321   2221              


Q ss_pred             -----------------ecccCCc-EEEEEeCCe--------------------EEEEEeccCCCCCeeeEEEeecCccc
Q psy3272          63 -----------------SVSVSDR-RLMETRGNK--------------------HTLTIKNVQSTDFGNYSCVADNNLGR  104 (115)
Q Consensus        63 -----------------~g~~~~~-~~~~~~~~~--------------------~~l~i~~~~~~d~G~y~C~~~n~~~~  104 (115)
                                       .|.|.+. +.|.+++..                    ..|.|.++..+|.|.|+|.|.|..|.
T Consensus       219 ~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~  298 (524)
T 2ec8_A          219 ASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGS  298 (524)
T ss_dssp             SEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCE
T ss_pred             CcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCc
Confidence                             4567776 888876533                    47999999999999999999999999


Q ss_pred             eeeEEEEEEe
Q psy3272         105 AKKYMELSEL  114 (115)
Q Consensus       105 ~~~~~~l~v~  114 (115)
                      ....+.|.|.
T Consensus       299 ~~~~~~l~V~  308 (524)
T 2ec8_A          299 ANVTTTLEVV  308 (524)
T ss_dssp             EEEEEEEEEE
T ss_pred             eEEEEEEEEe
Confidence            8888888774

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.62  E-value=2e-15  Score=95.20  Aligned_cols=106  Identities=19%  Similarity=0.257  Sum_probs=77.6

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCe-EEEEEeecCCcceeE-E-EEE----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFG-NYSCVADNNLGRAKK-Y-MEL----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~~~~~~-~-~~v----------------   62 (115)
                      |.|+|+|++..+..  ..+. .    ....|.|.+++.+|+| .|.|.+.+..+.... . ..+                
T Consensus        68 ~~v~W~k~~~~~~~--~~~~-~----~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~~~~~~~~  140 (329)
T 3oq3_B           68 NVVNWEKIGKTRRP--LNRR-V----KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGT  140 (329)
T ss_dssp             CEEEEEECSSSCEE--CSTT-E----ETTEEEESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEEEEEETTS
T ss_pred             CeeEEEECCCCccc--cCce-e----ecceEEEcCCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEeccccceEE
Confidence            57999999876654  3332 1    2567999999999999 899999987754433 1 122                


Q ss_pred             ------------eccc-CCcEEEEEeCCe------------EEEEEeccCCCCCeeeEEEeecC--ccceee----EEEE
Q psy3272          63 ------------SVSV-SDRRLMETRGNK------------HTLTIKNVQSTDFGNYSCVADNN--LGRAKK----YMEL  111 (115)
Q Consensus        63 ------------~g~~-~~~~~~~~~~~~------------~~l~i~~~~~~d~G~y~C~~~n~--~~~~~~----~~~l  111 (115)
                                  .|.| .+.+.|.+++..            ..|.|.++..+|.|.|+|.|.|.  .|....    .+.|
T Consensus       141 ~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l  220 (329)
T 3oq3_B          141 HDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKIL  220 (329)
T ss_dssp             STTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEE
T ss_pred             eCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEE
Confidence                        4577 789999886532            37999999999999999999987  554332    3556


Q ss_pred             EEe
Q psy3272         112 SEL  114 (115)
Q Consensus       112 ~v~  114 (115)
                      .|.
T Consensus       221 ~V~  223 (329)
T 3oq3_B          221 TVI  223 (329)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.62  E-value=8.3e-15  Score=86.34  Aligned_cols=106  Identities=15%  Similarity=0.248  Sum_probs=72.2

Q ss_pred             cceEEEECCEEeC----CCC------------CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE-
Q psy3272           2 GMMSWYQDTFLIE----PSV------------SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL-   62 (115)
Q Consensus         2 p~v~W~~~~~~~~----~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v-   62 (115)
                      +.|.|++++..+.    ...            ..|+.+.   ....|+|.+++.+|+|.|.|.+.+..+....  .|.| 
T Consensus        29 ~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~  105 (193)
T 2if7_A           29 NFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT---QSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRIL  105 (193)
T ss_dssp             CEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC---TTCCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             cEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC---CCeEEEECCCCcccCceEEEEEEecCCCeEEEEEEEEE
Confidence            5799999987542    100            0132221   3578999999999999999999876654332  2222 


Q ss_pred             ----------------------------ec-ccCCcEEEEEeCCe----EEEEEeccCCC-CCeeeEEEeecCccceeeE
Q psy3272          63 ----------------------------SV-SVSDRRLMETRGNK----HTLTIKNVQST-DFGNYSCVADNNLGRAKKY  108 (115)
Q Consensus        63 ----------------------------~g-~~~~~~~~~~~~~~----~~l~i~~~~~~-d~G~y~C~~~n~~~~~~~~  108 (115)
                                                  .| .|.|.+.|.+++..    ..|.|...... |.|.|+|.|.|..|..+..
T Consensus       106 ~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~  185 (193)
T 2if7_A          106 RQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRISSEQDYTCIAENAVSNLSFS  185 (193)
T ss_dssp             CCCEEEEEEECCC---CSSEEEEEEEEEESCCTTCEEEEEETTEEEESSSEEEEEECTTTCSCCEEEEEEEETTEEEEEE
T ss_pred             ccCCCCeEecCceeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCCCCeEEEEeccCcCCCCcEEEEEECCCCccccc
Confidence                                        33 34678899886532    35777655554 8999999999999987665


Q ss_pred             EE
Q psy3272         109 ME  110 (115)
Q Consensus       109 ~~  110 (115)
                      +.
T Consensus       186 ~~  187 (193)
T 2if7_A          186 VS  187 (193)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.61  E-value=3.3e-15  Score=90.95  Aligned_cols=103  Identities=17%  Similarity=0.181  Sum_probs=73.8

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE-----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL-----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v-----------------   62 (115)
                      |.+.|++++..+..  .        .....|.|.++..+|.|.|.|.+.+..+....  .+.|                 
T Consensus       113 ~~v~W~~~g~~~~~--~--------~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~~~~~  182 (262)
T 3rjd_A          113 YNVLYYRNGKAFKF--F--------HWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPL  182 (262)
T ss_dssp             EEEEEEETTEEEEE--E--------EECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESSCSSE
T ss_pred             ceEEEEECCccccc--c--------CCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecCceee
Confidence            58999999987754  1        12467899999999999999999987755544  3433                 


Q ss_pred             ------------ecccC-Cc----EEEEEeCC-------eEEEEEeccCCCCCeeeEEEeecCccce---eeEEEEEEe
Q psy3272          63 ------------SVSVS-DR----RLMETRGN-------KHTLTIKNVQSTDFGNYSCVADNNLGRA---KKYMELSEL  114 (115)
Q Consensus        63 ------------~g~~~-~~----~~~~~~~~-------~~~l~i~~~~~~d~G~y~C~~~n~~~~~---~~~~~l~v~  114 (115)
                                  .|.|. |.    +.|..++.       ...|.|.++..+|.|.|+|.|.|..|..   +..+.|.|.
T Consensus       183 ~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~~~s~~~~l~V~  261 (262)
T 3rjd_A          183 LEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVL  261 (262)
T ss_dssp             ETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEEESCCEEEESSCCGGGCEEEEEEEEETTSSCEEECCCEEECEE
T ss_pred             cCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEecccCCCceEEEEEechhhCeEEEEEEEcccCceEEecCCeEEEEe
Confidence                        23443 32    44555442       3469999999999999999999999974   335555553

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.61  E-value=7.4e-16  Score=97.23  Aligned_cols=109  Identities=18%  Similarity=0.345  Sum_probs=78.5

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcc----eeE--EEEE-------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR----AKK--YMEL-------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~----~~~--~~~v-------------   62 (115)
                      |.|.|+|++..+... ..++..  ......|.|.++..+|.|.|+|.+.+..+.    ...  .+.|             
T Consensus       155 ~~v~W~k~g~~~~~~-~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~  231 (339)
T 3o4o_C          155 VKIQWYKDSLLLDKD-NEKFLS--VRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIIS  231 (339)
T ss_dssp             CCBCCEESSCBCCTT-CSSEEE--CTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECC
T ss_pred             ceEEEecCCeeCCCC-CceeEE--cCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEec
Confidence            689999999888651 233332  233458999999999999999999987653    222  3333             


Q ss_pred             ----------------------eccc-CCcEEEEEeCC---------------------------eEEEEEeccCCCCC-
Q psy3272          63 ----------------------SVSV-SDRRLMETRGN---------------------------KHTLTIKNVQSTDF-   91 (115)
Q Consensus        63 ----------------------~g~~-~~~~~~~~~~~---------------------------~~~l~i~~~~~~d~-   91 (115)
                                            .|.| .+.+.|..++.                           ...|.|.++..+|. 
T Consensus       232 ~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~  311 (339)
T 3o4o_C          232 PLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLH  311 (339)
T ss_dssp             CSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCC
T ss_pred             CCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcC
Confidence                                  2455 55666765431                           11699999999998 


Q ss_pred             eeeEEEeecCccceeeEEEEEE
Q psy3272          92 GNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        92 G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      |.|+|.|.|..|..+..+.+.+
T Consensus       312 G~Y~C~a~N~~G~~~~~~~~~~  333 (339)
T 3o4o_C          312 MDFKCVVHNTLSFQTLRTTVKE  333 (339)
T ss_dssp             CCCEEEEEETTEEECCBCCCCC
T ss_pred             ccEEEEEEeccCceEEEEEhhH
Confidence            9999999999999887766544

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.61  E-value=5.9e-14  Score=83.67  Aligned_cols=86  Identities=15%  Similarity=0.164  Sum_probs=63.6

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE---------------------------ecccCCcEEEEEe-CC
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL---------------------------SVSVSDRRLMETR-GN   77 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v---------------------------~g~~~~~~~~~~~-~~   77 (115)
                      ....|.|.+++.+|+|.|.|.+.+ .+....  .|.|                           .|.|.|.+.|..+ +.
T Consensus        78 ~~~~L~I~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~  156 (222)
T 3sbw_C           78 GNAALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQ  156 (222)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCC
T ss_pred             CEEEEEEcCcccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCc
Confidence            356899999999999999999987 333322  3333                           5688899999886 21


Q ss_pred             e-----------------EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          78 K-----------------HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        78 ~-----------------~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .                 ....+..+...|.|.|+|.|.|..|.....+.|.|.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~  210 (222)
T 3sbw_C          157 VLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIP  210 (222)
T ss_dssp             EECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECC
T ss_pred             eecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEec
Confidence            1                 012222456789999999999999998888888764

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.60  E-value=1.2e-15  Score=91.16  Aligned_cols=86  Identities=15%  Similarity=0.197  Sum_probs=64.8

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCCcceeE-EEEE------------------------------ecccCCcEEEEEeCC
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNLGRAKK-YMEL------------------------------SVSVSDRRLMETRGN   77 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~-~~~v------------------------------~g~~~~~~~~~~~~~   77 (115)
                      ...|.|.+++.+|+|.|.|.+.+....... .+.|                              .|.|.+.+.|...+.
T Consensus        71 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~  150 (222)
T 4i0k_A           71 NASLRLQRVRVTDEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQG  150 (222)
T ss_dssp             BCCEEECSCCGGGCSCEEEEEEECCCCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCCEEEEECTTS
T ss_pred             eEEEEECCcccccCEEEEEEEEeCCCceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCCeEEEEcCCC
Confidence            567999999999999999999853211100 1111                              467888888876321


Q ss_pred             ------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          78 ------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        78 ------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                                        ...|.|.++..+|.|.|+|.+.|..|.....+.|.|.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  205 (222)
T 4i0k_A          151 VPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTIT  205 (222)
T ss_dssp             CBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECC
T ss_pred             ccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEe
Confidence                              1237899999999999999999999998888888774

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.60  E-value=2.7e-14  Score=95.75  Aligned_cols=84  Identities=18%  Similarity=0.169  Sum_probs=64.5

Q ss_pred             EEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE---------------------------e----cccCCcEEEEEeC
Q psy3272          30 HTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL---------------------------S----VSVSDRRLMETRG   76 (115)
Q Consensus        30 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v---------------------------~----g~~~~~~~~~~~~   76 (115)
                      ..|.|.++..+|+|.|.|.+ +..+....  .|.|                           .    |.|.+.+.|.+++
T Consensus       406 ~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g  484 (585)
T 2ocw_A          406 FTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTG  484 (585)
T ss_pred             EEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCccccccCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecC
Confidence            45999999999999999999 65554444  3333                           1    5667778887755


Q ss_pred             C----------------------eEEEEEeccCCCCCeeeEEEeecCccceee-EEEEEEe
Q psy3272          77 N----------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKK-YMELSEL  114 (115)
Q Consensus        77 ~----------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~-~~~l~v~  114 (115)
                      .                      ...|.|.++..+|.|.|+|.|.|..|.... .+.|.|.
T Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~  545 (585)
T 2ocw_A          485 CQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVE  545 (585)
T ss_pred             ceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEE
Confidence            2                      148999999999999999999999987554 4777764

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.60  E-value=4.3e-14  Score=83.95  Aligned_cols=108  Identities=21%  Similarity=0.243  Sum_probs=72.9

Q ss_pred             cceEEEECC--EEe----------CCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCccee---EEEEE----
Q psy3272           2 GMMSWYQDT--FLI----------EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK---KYMEL----   62 (115)
Q Consensus         2 p~v~W~~~~--~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~---~~~~v----   62 (115)
                      |.|.|+|++  ..+          ......++..........|.|.+++.+|+|.|.|.+.+..+...   ..+.|    
T Consensus        33 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~  112 (212)
T 1q0x_L           33 NYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQP  112 (212)
T ss_dssp             GCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECCSC
T ss_pred             CeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCEEEEEEEecCchhhcCCCeEEEEecCC
Confidence            579999963  222          01113566555455677999999999999999999987653211   12222    


Q ss_pred             ---------------------------eccc-CC-cEEEEEeCCe---------------------EEEEEeccCCCCCe
Q psy3272          63 ---------------------------SVSV-SD-RRLMETRGNK---------------------HTLTIKNVQSTDFG   92 (115)
Q Consensus        63 ---------------------------~g~~-~~-~~~~~~~~~~---------------------~~l~i~~~~~~d~G   92 (115)
                                                 .|.+ .+ .+.|.+++..                     ..|.|.....+|.|
T Consensus       113 ~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g  192 (212)
T 1q0x_L          113 KSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHS  192 (212)
T ss_dssp             CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCC
T ss_pred             CCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCC
Confidence                                       3333 33 7888875421                     25788888889999


Q ss_pred             eeEEEeecCccceeeEE
Q psy3272          93 NYSCVADNNLGRAKKYM  109 (115)
Q Consensus        93 ~y~C~~~n~~~~~~~~~  109 (115)
                      .|+|.|.|.....++.+
T Consensus       193 ~Y~C~a~n~~~~~~~~v  209 (212)
T 1q0x_L          193 SYSCQVTHEGHSSNKTL  209 (212)
T ss_dssp             EEEEEEEETTEEEEEEE
T ss_pred             cEEEEEEeCCcceeeee
Confidence            99999999987765554

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.60  E-value=6.5e-17  Score=111.08  Aligned_cols=86  Identities=24%  Similarity=0.341  Sum_probs=0.0

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCCccee----EEEEE-----------------------------ecccCCcEEEEEe
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNLGRAK----KYMEL-----------------------------SVSVSDRRLMETR   75 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~----~~~~v-----------------------------~g~~~~~~~~~~~   75 (115)
                      ...|.|.++..+|+|.|.|.+.+..+...    ..+.|                             .|.|.|.+.|.++
T Consensus       624 ~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~  703 (772)
T 3v2a_R          624 ILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKD  703 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEEC
Confidence            34599999999999999999998543221    12222                             5688889999876


Q ss_pred             CC-------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          76 GN-------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        76 ~~-------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      +.             ...|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus       704 g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  755 (772)
T 3v2a_R          704 NETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE  755 (772)
T ss_dssp             ----------------------------------------------------
T ss_pred             CeECcCCCCeEEcCCCcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEE
Confidence            53             4579999999999999999999999998888888775

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.60  E-value=5.9e-16  Score=97.42  Aligned_cols=106  Identities=26%  Similarity=0.449  Sum_probs=42.9

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--E--------------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--Y--------------------   59 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~--------------------   59 (115)
                      |.|+|+|+|..+..  ..++..    ....|.|.+++.+|+|.|.|.+.+. +....  .                    
T Consensus        39 ~~v~W~k~g~~~~~--~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~  111 (334)
T 1ry7_B           39 GPTVWVKDGTGLVP--SERVLV----GPQRLQVLNASHEDSGAYSCRQRLT-QRVLCHFSVRVTDAPSSGDDEDGEDEAE  111 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cceEEEECCeeCCC--cccEEe----ccceEEEeecccccCEEEEEEEEeC-CeEEEEEEEEEeccCccccccccccccc
Confidence            58999999988865  454433    3578999999999999999999875 21111  0                    


Q ss_pred             ---------------------EEE------------ecccCCcEEEEEeCC----------------eEEEEEeccCCCC
Q psy3272          60 ---------------------MEL------------SVSVSDRRLMETRGN----------------KHTLTIKNVQSTD   90 (115)
Q Consensus        60 ---------------------~~v------------~g~~~~~~~~~~~~~----------------~~~l~i~~~~~~d   90 (115)
                                           +.+            .|.|.+.+.|.+++.                ...|.|.++..+|
T Consensus       112 ~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  191 (334)
T 1ry7_B          112 DTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSD  191 (334)
T ss_dssp             -------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGG
T ss_pred             cccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCccc
Confidence                                 111            457778888876542                2379999999999


Q ss_pred             CeeeEEEeecCccceeeEEEEEEe
Q psy3272          91 FGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        91 ~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .|.|+|.+.|..|.....+.|.|.
T Consensus       192 ~G~Y~C~a~n~~g~~~~~~~l~V~  215 (334)
T 1ry7_B          192 RGNYTCVVENKFGSIRQTYTLDVL  215 (334)
T ss_dssp             CCCEEEEEEETTEEEEEEEEEEEE
T ss_pred             CEEEEEEEEeCCCCEEEEEEEEEe
Confidence            999999999999988888777764

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.59  E-value=1.8e-14  Score=85.55  Aligned_cols=109  Identities=20%  Similarity=0.208  Sum_probs=75.4

Q ss_pred             cceEEEEC--CEEeC---C-------CCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcc--eeE--EEEE---
Q psy3272           2 GMMSWYQD--TFLIE---P-------SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR--AKK--YMEL---   62 (115)
Q Consensus         2 p~v~W~~~--~~~~~---~-------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~--~~~--~~~v---   62 (115)
                      |.|.|+|+  +..+.   .       ....++..........|.|.+++.+|+|.|.|.+.+..+.  ...  .+.|   
T Consensus        28 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~  107 (211)
T 3tv3_L           28 NFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQ  107 (211)
T ss_dssp             SCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEECCS
T ss_pred             CeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEeCC
Confidence            68999994  22211   0       0135666555667789999999999999999999886551  111  2332   


Q ss_pred             ----------------------------ecc--cCCcEEEEEeCCe---------------------EEEEEeccCCCCC
Q psy3272          63 ----------------------------SVS--VSDRRLMETRGNK---------------------HTLTIKNVQSTDF   91 (115)
Q Consensus        63 ----------------------------~g~--~~~~~~~~~~~~~---------------------~~l~i~~~~~~d~   91 (115)
                                                  .|.  |.+.+.|.+++..                     ..|.|..+..+|.
T Consensus       108 ~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~  187 (211)
T 3tv3_L          108 PKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSH  187 (211)
T ss_dssp             CCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHS
T ss_pred             CCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCC
Confidence                                        333  3467788775421                     3577888888899


Q ss_pred             eeeEEEeecCccceeeEEE
Q psy3272          92 GNYSCVADNNLGRAKKYME  110 (115)
Q Consensus        92 G~y~C~~~n~~~~~~~~~~  110 (115)
                      |.|+|.+.|..+...+.+.
T Consensus       188 g~Y~C~v~~~~~~~~~~~~  206 (211)
T 3tv3_L          188 RSYSCQVTHEGSTVEKTVA  206 (211)
T ss_dssp             SCEEEEEEETTEEEEEEEC
T ss_pred             CeEEEEEEECCCCEEeecc
Confidence            9999999999988776654

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.59  E-value=1.1e-14  Score=93.09  Aligned_cols=111  Identities=23%  Similarity=0.304  Sum_probs=79.8

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE-------EEE-------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK-------YME-------------   61 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~-------~~~-------------   61 (115)
                      |.+.|++++.++......+..  .......|.|.++..+|+|.|.|.+.+..+....       .+.             
T Consensus       132 ~~i~W~~~~~~~~~~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~  209 (382)
T 1cs6_A          132 LSYRWLLNEFPNFIPADGRRF--VSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSI  209 (382)
T ss_dssp             CEEEEEESSTTCBCCCCSSEE--ECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEE
T ss_pred             cEEEEEECCCccccccCceEE--EecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCce
Confidence            579999998765321123322  2234467999999999999999999865421100       111             


Q ss_pred             ---------E------------ecccCCcEEEEEeCC---------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEE
Q psy3272          62 ---------L------------SVSVSDRRLMETRGN---------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL  111 (115)
Q Consensus        62 ---------v------------~g~~~~~~~~~~~~~---------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l  111 (115)
                               +            .|.|.+.+.|.+.+.         ...|.|.++..+|.|.|+|.+.|..|.....+.|
T Consensus       210 ~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  289 (382)
T 1cs6_A          210 KAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRI  289 (382)
T ss_dssp             EECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             eccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCcccccEEecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEE
Confidence                     0            567888899987542         3479999999999999999999999998777777


Q ss_pred             EEe
Q psy3272         112 SEL  114 (115)
Q Consensus       112 ~v~  114 (115)
                      .|.
T Consensus       290 ~V~  292 (382)
T 1cs6_A          290 IIH  292 (382)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            663

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.59  E-value=6.6e-14  Score=85.25  Aligned_cols=106  Identities=21%  Similarity=0.306  Sum_probs=72.3

Q ss_pred             cceEEEECC--EEe----------CCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE----
Q psy3272           2 GMMSWYQDT--FLI----------EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL----   62 (115)
Q Consensus         2 p~v~W~~~~--~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v----   62 (115)
                      |.|.|+|++  ..+          ......++..........|.|.+++.+|+|.|.|.+.+..+....   .+.|    
T Consensus        73 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~  152 (254)
T 2c1o_A           73 TYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRAD  152 (254)
T ss_dssp             BCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCC
T ss_pred             CceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCC
Confidence            789999843  211          111135666555556779999999999999999999876432111   2222    


Q ss_pred             --------------------------ec-ccC-CcEEEEEeCC----------------------eEEEEEeccCCCCCe
Q psy3272          63 --------------------------SV-SVS-DRRLMETRGN----------------------KHTLTIKNVQSTDFG   92 (115)
Q Consensus        63 --------------------------~g-~~~-~~~~~~~~~~----------------------~~~l~i~~~~~~d~G   92 (115)
                                                .| .|. +.+.|.+++.                      ...|.|.++..+|.|
T Consensus       153 ~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G  232 (254)
T 2c1o_A          153 AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHN  232 (254)
T ss_dssp             BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCC
T ss_pred             CCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCC
Confidence                                      34 333 3478887652                      236889999999999


Q ss_pred             eeEEEeecCccceee
Q psy3272          93 NYSCVADNNLGRAKK  107 (115)
Q Consensus        93 ~y~C~~~n~~~~~~~  107 (115)
                      .|+|.|.|.......
T Consensus       233 ~Y~C~a~n~~~~~~~  247 (254)
T 2c1o_A          233 SYTCEATHKTSTSPI  247 (254)
T ss_dssp             EEEEEEECTTCSSCE
T ss_pred             eEEEEEEcCCCCCcc
Confidence            999999998876433

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.58  E-value=7.2e-14  Score=91.18  Aligned_cols=109  Identities=10%  Similarity=0.040  Sum_probs=71.2

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE-----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL-----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v-----------------   62 (115)
                      |.|.|++++..+..  ...+.. .......|.|.+++.+|+|.|.|.+.|..+....  .|.|                 
T Consensus        78 p~i~W~~~~~~l~~--~~~~~~-~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~p~~~~~~  154 (423)
T 3qs7_E           78 ISCLWVFKHSSLNC--QPHFDL-QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKME  154 (423)
T ss_dssp             CEEEEEETTEEECC--CCBC------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-----CEEEEEEEECS
T ss_pred             CeEEEEECCCccCc--cceecc-ccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEecCccccccCCcEeccC
Confidence            68999999987764  222111 1122457999999999999999999998776654  3333                 


Q ss_pred             ---------ecccCCcEEEEEeCCeE----------EEEEe-ccCCCCCeeeEEEeecCccceee-EEEEEE
Q psy3272          63 ---------SVSVSDRRLMETRGNKH----------TLTIK-NVQSTDFGNYSCVADNNLGRAKK-YMELSE  113 (115)
Q Consensus        63 ---------~g~~~~~~~~~~~~~~~----------~l~i~-~~~~~d~G~y~C~~~n~~~~~~~-~~~l~v  113 (115)
                               .|.|.|.+.|.+.+...          ..... .+...|.|.|+|.|.|..|.... .+.|.|
T Consensus       155 ~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V  226 (423)
T 3qs7_E          155 NQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDL  226 (423)
T ss_dssp             SSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEES
T ss_pred             CceEEEEEEeeecCCeEEEEECCCCCccccccccccccccceEEecccCeEEEEEEEcCCCCcceeeEEEEE
Confidence                     57899999998865311          01111 11568999999999999998543 355544

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.57  E-value=2e-14  Score=92.13  Aligned_cols=103  Identities=20%  Similarity=0.237  Sum_probs=77.8

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE----------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL----------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v----------------   62 (115)
                      |.++|+|+|..+..  ... ..........|.|.+++.+|+|.|.|.+.+..+....   .+.+                
T Consensus        37 ~~v~W~k~g~~~~~--~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~~~~~~~~~  113 (395)
T 1bih_A           37 VKYSWKKDGKSYNW--QEH-NAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPI  113 (395)
T ss_dssp             CEEEEEESSSBCCT--TTT-TEEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEECCCCEEEEECCB
T ss_pred             ceEEEEECCcCccc--ccc-eEEEecCCceEEEecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCcCCcceeee
Confidence            68999999988876  332 1122345568999999999999999999987665432   2222                


Q ss_pred             ------------ecccCCcEEEEEeC-------------------CeEEEEEeccCCCCCe---eeEEEeecCccceee
Q psy3272          63 ------------SVSVSDRRLMETRG-------------------NKHTLTIKNVQSTDFG---NYSCVADNNLGRAKK  107 (115)
Q Consensus        63 ------------~g~~~~~~~~~~~~-------------------~~~~l~i~~~~~~d~G---~y~C~~~n~~~~~~~  107 (115)
                                  .|.|.+.+.|.+++                   ....|.|.++..+|.|   .|+|.+.|..+....
T Consensus       114 ~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~  192 (395)
T 1bih_A          114 EGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEV  192 (395)
T ss_dssp             TTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCE
T ss_pred             eCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEE
Confidence                        45788899998864                   1236999999999999   999999999987443

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.57  E-value=3.9e-14  Score=90.64  Aligned_cols=110  Identities=21%  Similarity=0.223  Sum_probs=79.7

Q ss_pred             cceEEEECCEEeCCC---CCCCEEEEEeCCeEEEEEecCCCCCC-eEEEEEeecCCcceeE------EEEE---------
Q psy3272           2 GMMSWYQDTFLIEPS---VSDRRLMETRGNKHTLTIKNVQSTDF-GNYSCVADNNLGRAKK------YMEL---------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~-G~y~C~~~~~~~~~~~------~~~v---------   62 (115)
                      |.|.|++++..+...   ...++..   .....|.|.+++.+|. |.|.|.+.+..+....      .+.|         
T Consensus       136 ~~v~W~~~~~~~~~~~~~~~~~~~~---~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p  212 (388)
T 2v5m_A          136 EVVSWHTDEEENYFPGAEYDGKYLV---LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAP  212 (388)
T ss_dssp             EEEEEEETTCCEECSSSCBTTTEEE---CTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEE
T ss_pred             ceEEEEeCCCcccccccCCCCcEEE---ccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCC
Confidence            579999998765321   0223322   2345799999999999 9999999875421110      1111         


Q ss_pred             ------------------------ecccCCcEEEEEeCC-----------------eEEEEEeccCCCCCeeeEEEeecC
Q psy3272          63 ------------------------SVSVSDRRLMETRGN-----------------KHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        63 ------------------------~g~~~~~~~~~~~~~-----------------~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                                              .|.|.+.+.|.+++.                 ...|.|.++..+|.|.|+|.|.|.
T Consensus       213 ~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~  292 (388)
T 2v5m_A          213 RTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNS  292 (388)
T ss_dssp             ECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECS
T ss_pred             cCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecC
Confidence                                    568888999988631                 127999999999999999999999


Q ss_pred             ccceeeEEEEEEe
Q psy3272         102 LGRAKKYMELSEL  114 (115)
Q Consensus       102 ~~~~~~~~~l~v~  114 (115)
                      .|..+..+.|.|.
T Consensus       293 ~g~~~~~~~l~V~  305 (388)
T 2v5m_A          293 VGGESVETVLTVT  305 (388)
T ss_dssp             SCEEEEEEEEEEE
T ss_pred             CCceeEEEEEEEe
Confidence            9998877777764

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.57  E-value=2e-14  Score=95.36  Aligned_cols=107  Identities=11%  Similarity=0.153  Sum_probs=74.3

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEE--eC----CeEEEEEecCCCCCCeEEEEEeecCCcceeEEEE---------------
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMET--RG----NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME---------------   61 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~--~~----~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~---------------   61 (115)
                      .|+|+|+|.++..  ..+.....  ..    ....|.|.++..+|.|.|.|.+.+..+.....+.               
T Consensus       147 ~v~W~k~g~~l~~--~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~  224 (523)
T 2rcj_C          147 TVAWKADGSPVKA--GVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFP  224 (523)
T ss_pred             EEEEecCCCCCCC--ceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEe
Confidence            8999999987764  22211000  01    1246999999999999999999886544332111               


Q ss_pred             ------------------Eecc-cCC-cEEEEEeCCe-------------------EEEEEeccCCCCCeeeEEEeecCc
Q psy3272          62 ------------------LSVS-VSD-RRLMETRGNK-------------------HTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        62 ------------------v~g~-~~~-~~~~~~~~~~-------------------~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                                        +.|. |.| .+.|.+++..                   ..|.|.++...| |.|+|.|.|..
T Consensus       225 ~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~  303 (523)
T 2rcj_C          225 LAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKP  303 (523)
T ss_pred             cCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCC
Confidence                              0344 666 7889876521                   279999999999 99999999999


Q ss_pred             cceeeEEEEE
Q psy3272         103 GRAKKYMELS  112 (115)
Q Consensus       103 ~~~~~~~~l~  112 (115)
                      |.....+.|.
T Consensus       304 g~~~~~~~l~  313 (523)
T 2rcj_C          304 SNTKVDKRVE  313 (523)
T ss_pred             CCcceEEecC
Confidence            9866555543

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.56  E-value=3.7e-14  Score=91.00  Aligned_cols=109  Identities=22%  Similarity=0.352  Sum_probs=79.6

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCC-CeEEEEEeecCCcceeE-----EEE--------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTD-FGNYSCVADNNLGRAKK-----YME--------------   61 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~~~~~-----~~~--------------   61 (115)
                      |.++|++++...... ..++..   .....|.|.++..+| .|.|.|.+.+..+....     .+.              
T Consensus       147 ~~v~W~~~~~~~~~~-~~~~~~---~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~  222 (404)
T 3p3y_A          147 PVIFWMSSSMEPITQ-DKRVSQ---GHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSF  222 (404)
T ss_dssp             CEEEEECTTSCBCCC-CSSEEE---CTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCB
T ss_pred             CeEEEeCCCccccCC-CCcEEE---cCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCcc
Confidence            689999987533220 333332   244579999999999 59999999876543211     111              


Q ss_pred             -----------E------------ecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCcccee
Q psy3272          62 -----------L------------SVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRAK  106 (115)
Q Consensus        62 -----------v------------~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~  106 (115)
                                 +            .|.|.+.+.|.+++.            ...|.|.++..+|.|.|+|.|.|..|...
T Consensus       223 ~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  302 (404)
T 3p3y_A          223 MYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIR  302 (404)
T ss_dssp             SSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred             ccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcEE
Confidence                       1            567888899988653            24799999999999999999999999988


Q ss_pred             eEEEEEEe
Q psy3272         107 KYMELSEL  114 (115)
Q Consensus       107 ~~~~l~v~  114 (115)
                      ..+.|.|.
T Consensus       303 ~~~~l~V~  310 (404)
T 3p3y_A          303 HTISVRVK  310 (404)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            88877764

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.56  E-value=1.8e-13  Score=82.32  Aligned_cols=94  Identities=18%  Similarity=0.220  Sum_probs=66.0

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCccee---EEEEE------------------------------ec
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK---KYMEL------------------------------SV   64 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~---~~~~v------------------------------~g   64 (115)
                      ..++..........|.|.+++.+|+|.|.|.+.+..+...   ..+.|                              .|
T Consensus        82 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~  161 (237)
T 3sob_L           82 PSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNN  161 (237)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEE
T ss_pred             CCcEEEEcCCCEEEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcc
Confidence            4566665556778999999999999999999976542111   12222                              33


Q ss_pred             -cc-CCcEEEEEeCC----------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEE
Q psy3272          65 -SV-SDRRLMETRGN----------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL  111 (115)
Q Consensus        65 -~~-~~~~~~~~~~~----------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l  111 (115)
                       .| .+.+.|.+++.                      ...|.|.....+|.|.|+|.|.|..........+
T Consensus       162 ~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~  232 (237)
T 3sob_L          162 FYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF  232 (237)
T ss_dssp             EBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEE
T ss_pred             cCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCceeeee
Confidence             44 57889987542                      1357788888899999999999998764444333

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.56  E-value=1.5e-13  Score=81.58  Aligned_cols=105  Identities=23%  Similarity=0.280  Sum_probs=71.3

Q ss_pred             cceEEEECC--EEe----------CCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE----
Q psy3272           2 GMMSWYQDT--FLI----------EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL----   62 (115)
Q Consensus         2 p~v~W~~~~--~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v----   62 (115)
                      |.|.|+|+.  ..+          ......++..........|.|.+++.+|+|.|.|.+.+..+....   .+.|    
T Consensus        30 ~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~  109 (210)
T 1lk3_L           30 SRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRAD  109 (210)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCC
T ss_pred             CCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcCCC
Confidence            679999942  221          111135565554556779999999999999999999876532211   2222    


Q ss_pred             --------------------------ec-ccCC-cEEEEEeCCe----------------------EEEEEeccCCCCCe
Q psy3272          63 --------------------------SV-SVSD-RRLMETRGNK----------------------HTLTIKNVQSTDFG   92 (115)
Q Consensus        63 --------------------------~g-~~~~-~~~~~~~~~~----------------------~~l~i~~~~~~d~G   92 (115)
                                                .| .|.+ .+.|.+++..                      ..|.|..+..+|.|
T Consensus       110 ~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G  189 (210)
T 1lk3_L          110 AAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHN  189 (210)
T ss_dssp             BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCC
T ss_pred             cCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCC
Confidence                                      33 3443 6888775421                      16899999999999


Q ss_pred             eeEEEeecCcccee
Q psy3272          93 NYSCVADNNLGRAK  106 (115)
Q Consensus        93 ~y~C~~~n~~~~~~  106 (115)
                      .|+|.|.|......
T Consensus       190 ~Y~C~a~n~~~~~~  203 (210)
T 1lk3_L          190 LYTCEVVHKTSSSP  203 (210)
T ss_dssp             EEEEEEECTTCSSC
T ss_pred             cEEEEEEecCCCCe
Confidence            99999999877543

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.56  E-value=1.6e-13  Score=81.67  Aligned_cols=110  Identities=18%  Similarity=0.235  Sum_probs=73.6

Q ss_pred             cceEEEECC--EEeC----------CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCc-ce---eEEEEE---
Q psy3272           2 GMMSWYQDT--FLIE----------PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG-RA---KKYMEL---   62 (115)
Q Consensus         2 p~v~W~~~~--~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~-~~---~~~~~v---   62 (115)
                      |.|.|+|++  ..+.          .....++..........|.|.+++.+|+|.|.|.+.+..+ ..   ...+.|   
T Consensus        32 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~  111 (216)
T 2xzc_L           32 NYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRT  111 (216)
T ss_dssp             SCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEECCC
T ss_pred             CeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEEEEEEEEeCCCcceECCCEEEEEcCC
Confidence            589999954  2110          1013456555555677999999999999999999988654 11   112222   


Q ss_pred             ---------------------------ec-ccCC-cEEEEEeCCe----------------------EEEEEeccCCCCC
Q psy3272          63 ---------------------------SV-SVSD-RRLMETRGNK----------------------HTLTIKNVQSTDF   91 (115)
Q Consensus        63 ---------------------------~g-~~~~-~~~~~~~~~~----------------------~~l~i~~~~~~d~   91 (115)
                                                 .| .|.+ .+.|.+++..                      ..|.|..+..+|.
T Consensus       112 ~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~  191 (216)
T 2xzc_L          112 VAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKH  191 (216)
T ss_dssp             CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTC
T ss_pred             CCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCC
Confidence                                       33 4444 7888875421                      1588888889999


Q ss_pred             eeeEEEeecCccceeeEEEE
Q psy3272          92 GNYSCVADNNLGRAKKYMEL  111 (115)
Q Consensus        92 G~y~C~~~n~~~~~~~~~~l  111 (115)
                      |.|+|.|.|..........+
T Consensus       192 g~Y~C~a~n~~~~~~~~~~i  211 (216)
T 2xzc_L          192 KVYACEVTHQGLSSPVTKSF  211 (216)
T ss_dssp             CEEEEEEECTTCSSCEEEEE
T ss_pred             CcEEEEEEcCCCCCceEEec
Confidence            99999999988664444333

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.55  E-value=3.3e-15  Score=93.34  Aligned_cols=100  Identities=23%  Similarity=0.343  Sum_probs=72.3

Q ss_pred             cceEEEECCEEeCC--CCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE--EEE---------------
Q psy3272           2 GMMSWYQDTFLIEP--SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY--MEL---------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~--~~v---------------   62 (115)
                      |.|+|+|++..+..  ....++..    ....|.|.+++.+|+|.|.|.+.+..+.....  +.+               
T Consensus        36 ~~v~W~k~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v~~~~p~~~~~~~~~~  111 (315)
T 1itb_B           36 GTITWYKDDSKTPVSTEQASRIHQ----HKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIF  111 (315)
T ss_dssp             SCCCEECTTSCSCSCCCTTSSSEE----CSSBEECTTCCGGGCSCCEECCCSSSCCCCEECCCEEECCCTTSSSCGGGEE
T ss_pred             ceEEEEeCCCcCccccccCCcEec----cCCeEEECCCChhhCEEEEEEEeCCceEEEEEEEEEEeCCCCCccccccccc
Confidence            68999999864432  11333332    23489999999999999999998765443331  111               


Q ss_pred             ----------------------ecccCCcEEEEEeCCe------------EEEEEeccCCCCCeeeEEEee-cCccce
Q psy3272          63 ----------------------SVSVSDRRLMETRGNK------------HTLTIKNVQSTDFGNYSCVAD-NNLGRA  105 (115)
Q Consensus        63 ----------------------~g~~~~~~~~~~~~~~------------~~l~i~~~~~~d~G~y~C~~~-n~~~~~  105 (115)
                                            .|.|.+.+.|.+++..            ..|.|.++..+|.|.|+|.+. |..|..
T Consensus       112 ~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~  189 (315)
T 1itb_B          112 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQ  189 (315)
T ss_dssp             EEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             ceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCceEEEEeceehhCcEEEEEEEcCCCCcE
Confidence                                  2466788899876532            279999999999999999999 777775

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.55  E-value=5e-14  Score=84.06  Aligned_cols=93  Identities=13%  Similarity=0.160  Sum_probs=62.6

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCCcce------eEEEEE----------------------------
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLGRA------KKYMEL----------------------------   62 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~------~~~~~v----------------------------   62 (115)
                      .++.+...  .....|.|.+++.+|+|.|.|.+.+..+..      ...+.|                            
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~  145 (219)
T 1c1e_H           66 GRFAFFLETSATTAYLQINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLG  145 (219)
T ss_dssp             SSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEE
T ss_pred             CcEEEEEecCCCEEEEEECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEE
Confidence            45554322  245789999999999999999998764210      112222                            


Q ss_pred             ---ec-ccCC-cEEEEEeCCe------------------EEEEEeccCCCCCeeeEEEeecCccceeeEEEEE
Q psy3272          63 ---SV-SVSD-RRLMETRGNK------------------HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS  112 (115)
Q Consensus        63 ---~g-~~~~-~~~~~~~~~~------------------~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~  112 (115)
                         .| .|.| .+.|.+++..                  ..|.| .....|.|.|+|.|.|..+.......+.
T Consensus       146 C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i-~~~~~d~g~Y~C~a~n~~~~~~~~~~i~  217 (219)
T 1c1e_H          146 CLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTV-PSSPRPSETVTCNVAHPASSTKVDKKIV  217 (219)
T ss_dssp             EEEEEEBSSCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEE-ESSSTTTSCCEEEEEEGGGTEEEEEECC
T ss_pred             EEcccccCCCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEE-ecccCCCCEEEEEEEeCCCCccEEEecC
Confidence               44 6777 8888765421                  25777 4444467999999999998876665554

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.55  E-value=2.2e-14  Score=87.90  Aligned_cols=102  Identities=16%  Similarity=0.165  Sum_probs=75.1

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeec-CCccee---E--EEEE------------
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN-NLGRAK---K--YMEL------------   62 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~-~~~~~~---~--~~~v------------   62 (115)
                      .|.|+|  +|..+..  .        .....|.|.....+|.|.|+|.+.+ ..+...   .  .+.|            
T Consensus       125 ~~~i~W--~g~~~~~--~--------~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p  192 (265)
T 2oz4_A          125 RAKVTL--NGVPAQP--L--------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCP  192 (265)
T ss_dssp             TSEEEE--SSCSSSC--C--------SSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSC
T ss_pred             CCEEEE--CCEEccC--C--------CCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCC
Confidence            378999  7776643  1        1356788888889999999999974 334433   2  3333            


Q ss_pred             -----------------ecccCCcEEEEEeCCeE--EEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 -----------------SVSVSDRRLMETRGNKH--TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 -----------------~g~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                                       .|.|.|.+.|.+++...  ...+..+..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus       193 ~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~~g~~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  263 (265)
T 2oz4_A          193 GNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL  263 (265)
T ss_dssp             SEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTSCEECCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CccEEcCCCeEEEEeECccCCCCeEEEEECCcccCCCCcEEEeehhhCeEEEEEEECCCCcEEEEEEEEEe
Confidence                             56889999999877511  11223478899999999999999999999999886

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.55  E-value=1.3e-14  Score=94.58  Aligned_cols=98  Identities=15%  Similarity=0.223  Sum_probs=65.6

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCc-cee---E--EEEE-------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG-RAK---K--YMEL-------------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~-~~~---~--~~~v-------------   62 (115)
                      |.|+|  +|.++..  .        .....|.|..+..+|.|.|.|.+.+..+ ...   .  .+.|             
T Consensus       311 p~i~W--~g~~~~~--~--------~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~  378 (450)
T 1z7z_I          311 AKVTL--NGVPAQP--L--------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPG  378 (450)
T ss_dssp             -------------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCS
T ss_pred             CEeEE--CCEEcCC--C--------CceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCC
Confidence            67899  6766622  1        1245789999999999999999986433 221   2  2333             


Q ss_pred             ----------------ecccCCcEEEEEeCCe-----EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 ----------------SVSVSDRRLMETRGNK-----HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ----------------~g~~~~~~~~~~~~~~-----~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                                      .|.|.|.+.|.+++..     ..+   .+..+|.|.|+|.|.|..|..+..+.|.|.
T Consensus       379 ~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~g~~~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  448 (450)
T 1z7z_I          379 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESV---TVTRDLEGTYLCRARSTQGEVTREVTVNVL  448 (450)
T ss_dssp             EEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTSCE---ECCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCCCCeE---eEehhhCeEEEEEEEeCCCceeEEEEEEEE
Confidence                            6789999999988751     112   678899999999999999999999999886

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.55  E-value=2.7e-13  Score=80.42  Aligned_cols=106  Identities=17%  Similarity=0.172  Sum_probs=69.7

Q ss_pred             cceEEEECC-EEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE----------------
Q psy3272           2 GMMSWYQDT-FLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL----------------   62 (115)
Q Consensus         2 p~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v----------------   62 (115)
                      |.|.|+++. .++..    .  .........|.|.+++.+|+|.|.|.+.+..+....  .|.|                
T Consensus        31 p~i~W~~~~~~~~~~----~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~~~~~~~~~~~  104 (202)
T 1vca_A           31 PFFSWRTQIDSPLNG----K--VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLE  104 (202)
T ss_dssp             CEEEEEETTCCCCSS----E--EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEEBCCSCCEEEESSCEE
T ss_pred             CeEEEECCCCCCccc----e--EEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEEeCCCCCEeCCceEEc
Confidence            679999843 22211    1  112345667999999999999999999988765544  3444                


Q ss_pred             -----------ecc-cC--CcEEEEEeCC-------------------eEEEEEeccCCCCCeeeEEEeecCccc-----
Q psy3272          63 -----------SVS-VS--DRRLMETRGN-------------------KHTLTIKNVQSTDFGNYSCVADNNLGR-----  104 (115)
Q Consensus        63 -----------~g~-~~--~~~~~~~~~~-------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~-----  104 (115)
                                 .|. |.  +.+.|.+++.                   ...|.|......|.|+|+|.|.|..+.     
T Consensus       105 ~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~  184 (202)
T 1vca_A          105 AGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVP  184 (202)
T ss_dssp             TTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSC
T ss_pred             CCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcc
Confidence                       233 33  2567876542                   123567777777889999999998876     


Q ss_pred             --eeeEEEEEE
Q psy3272         105 --AKKYMELSE  113 (115)
Q Consensus       105 --~~~~~~l~v  113 (115)
                        .+..+.|.|
T Consensus       185 ~~~~~~~~L~V  195 (202)
T 1vca_A          185 TVRQAVKELQV  195 (202)
T ss_dssp             SEEEEEEECCE
T ss_pred             eeEeeEEEEEE
Confidence              234555555

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.55  E-value=2.4e-14  Score=85.06  Aligned_cols=107  Identities=19%  Similarity=0.238  Sum_probs=72.2

Q ss_pred             cceEEEECC--EEeC----------CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC-Ccce----eEEEEE--
Q psy3272           2 GMMSWYQDT--FLIE----------PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN-LGRA----KKYMEL--   62 (115)
Q Consensus         2 p~v~W~~~~--~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~-~~~~----~~~~~v--   62 (115)
                      |.|.|||+.  ..+.          .....++..........|.|.+++.+|+|.|.|.+.+. ....    ...+.|  
T Consensus        29 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~  108 (212)
T 1nfd_E           29 NFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLR  108 (212)
T ss_dssp             SCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEEC
T ss_pred             CeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEEEEEEcccCcccccCCceEEEEcc
Confidence            579999853  3221          00135565555556779999999999999999999852 1111    112222  


Q ss_pred             -----------------------------ecc-cC-CcEEEEEeCCe--------------------EEEEEeccCCCCC
Q psy3272          63 -----------------------------SVS-VS-DRRLMETRGNK--------------------HTLTIKNVQSTDF   91 (115)
Q Consensus        63 -----------------------------~g~-~~-~~~~~~~~~~~--------------------~~l~i~~~~~~d~   91 (115)
                                                   .|. |. +.+.|.+++..                    ..|.|.++..+|.
T Consensus       109 ~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~  188 (212)
T 1nfd_E          109 GPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSH  188 (212)
T ss_dssp             CCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTC
T ss_pred             CCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCC
Confidence                                         334 44 68899876521                    2378889999999


Q ss_pred             eeeEEEeecCccceeeE
Q psy3272          92 GNYSCVADNNLGRAKKY  108 (115)
Q Consensus        92 G~y~C~~~n~~~~~~~~  108 (115)
                      |.|+|.|.|..+..++.
T Consensus       189 G~Y~C~a~n~~~~~~~~  205 (212)
T 1nfd_E          189 NRVSCQVTHEGETVEKS  205 (212)
T ss_dssp             SCEEEEEECTTTTCCCC
T ss_pred             CeEEEEEEeCCceEEEE
Confidence            99999999998775543

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.55  E-value=2.2e-13  Score=82.99  Aligned_cols=110  Identities=16%  Similarity=0.159  Sum_probs=72.1

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcc----eeEEEEEe--------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR----AKKYMELS--------------   63 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~----~~~~~~v~--------------   63 (115)
                      +.+.|||++..+.......   ........|.|.+++.+|+|.|.|.+.+..+.    ....|.|.              
T Consensus        35 ~~~~w~k~g~~~~~~~~~~---~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p~~  111 (242)
T 1p6f_A           35 VEYQLHFEGSLFAVDRPKP---PERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGP  111 (242)
T ss_dssp             CEEEEEETTEEEEEECCSS---CTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEESCS
T ss_pred             cEEEEEECCCccccccccc---cCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEccCCC
Confidence            4689999998764200000   01124678999999999999999999764221    11133331              


Q ss_pred             ----c----------ccCCcEEEEEeCC-----------eEEEEEeccCCCCCeeeEEEeecCc---cceeeEEEEEEe
Q psy3272          64 ----V----------SVSDRRLMETRGN-----------KHTLTIKNVQSTDFGNYSCVADNNL---GRAKKYMELSEL  114 (115)
Q Consensus        64 ----g----------~~~~~~~~~~~~~-----------~~~l~i~~~~~~d~G~y~C~~~n~~---~~~~~~~~l~v~  114 (115)
                          |          .+.+.+.|.+++.           ...|.|.+++.+|+|.|+|.+.|..   ...+..+.|.|.
T Consensus       112 ~v~~G~~vtL~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  190 (242)
T 1p6f_A          112 EVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT  190 (242)
T ss_dssp             EEETTCEEEEEEECTTSCSEEEEEECSSSCEEEEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEE
T ss_pred             ccCCCCcEEEEEecCCCCCEEEEEECCCccCccccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEe
Confidence                1          2344677777652           3579999999999999999999864   223445666664

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.54  E-value=2.3e-14  Score=85.82  Aligned_cols=84  Identities=19%  Similarity=0.292  Sum_probs=59.2

Q ss_pred             EEEEEecCCCCCCeEEEEEeecCC-cceeE--EEEE--------------------------------ecccCCcEEEEE
Q psy3272          30 HTLTIKNVQSTDFGNYSCVADNNL-GRAKK--YMEL--------------------------------SVSVSDRRLMET   74 (115)
Q Consensus        30 ~~l~i~~~~~~d~G~y~C~~~~~~-~~~~~--~~~v--------------------------------~g~~~~~~~~~~   74 (115)
                      ..|.|.+++.+|+|.|.|.+.+.. +....  .+.|                                .|.|.|.+.|.+
T Consensus        77 ~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~  156 (231)
T 2pet_A           77 GRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYR  156 (231)
T ss_dssp             CCEEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEE
T ss_pred             ceEEEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEE
Confidence            349999999999999999998765 33333  3333                                457888888987


Q ss_pred             eCC-----e-----------------------EEEEEeccCCCCCeeeEEEeec-----Cccc-eeeEEEEEE
Q psy3272          75 RGN-----K-----------------------HTLTIKNVQSTDFGNYSCVADN-----NLGR-AKKYMELSE  113 (115)
Q Consensus        75 ~~~-----~-----------------------~~l~i~~~~~~d~G~y~C~~~n-----~~~~-~~~~~~l~v  113 (115)
                      ++.     .                       ..|.|......|.|.|+|.|.|     ..+. .+..+.|.|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V  229 (231)
T 2pet_A          157 NGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL  229 (231)
T ss_dssp             TTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred             CCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence            542     1                       4577764444569999999999     4555 555666654

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.54  E-value=1.2e-13  Score=86.04  Aligned_cols=79  Identities=18%  Similarity=0.166  Sum_probs=60.3

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCC-cceeE--EEEE------------------------------ecccCCcEEEEE
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNL-GRAKK--YMEL------------------------------SVSVSDRRLMET   74 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~-~~~~~--~~~v------------------------------~g~~~~~~~~~~   74 (115)
                      ....|.|.+++.+|+|.|.|.+.+.. +....  .+.+                              .|.|.+.+.|.+
T Consensus        72 ~~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~  151 (308)
T 4fom_A           72 NDATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEG  151 (308)
T ss_dssp             SBCCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECC
T ss_pred             CceEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEE
Confidence            34679999999999999999998753 33333  2222                              467888899976


Q ss_pred             eCC----------------eEEEEEeccCCCCCeeeEEEeecCcccee
Q psy3272          75 RGN----------------KHTLTIKNVQSTDFGNYSCVADNNLGRAK  106 (115)
Q Consensus        75 ~~~----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~  106 (115)
                      ++.                ...|.|..+...|.|.|+|.|.|..+...
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~  199 (308)
T 4fom_A          152 DLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKD  199 (308)
T ss_dssp             CSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSC
T ss_pred             CCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCc
Confidence            542                23689999999999999999999877643

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.53  E-value=2.2e-13  Score=88.44  Aligned_cols=99  Identities=17%  Similarity=0.185  Sum_probs=68.4

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEE--eC-----CeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE-------------
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMET--RG-----NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL-------------   62 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~--~~-----~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v-------------   62 (115)
                      .|+|+|+|.++..  ........  ..     ....|.|.++..+|+|.|.|.+.+..+.....+.+             
T Consensus       149 ~v~W~k~g~~~~~--~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~  226 (438)
T 1qgc_4          149 NVKWKIDGSERQN--GVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECEVMLVESG  226 (438)
T ss_dssp             EEEEEETTEEECT--TEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETTC-CCEEEEEC
T ss_pred             EEEEEECCEEcCC--CceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecccccccceeEEecCC
Confidence            7999999998865  21110000  00     14579999999999999999999876552221111             


Q ss_pred             ----------------eccc--CCcEEEEEe--C----------------------------------CeEEEEEeccCC
Q psy3272          63 ----------------SVSV--SDRRLMETR--G----------------------------------NKHTLTIKNVQS   88 (115)
Q Consensus        63 ----------------~g~~--~~~~~~~~~--~----------------------------------~~~~l~i~~~~~   88 (115)
                                      .|.|  .+.+.|.++  +                                  ....|.|.++..
T Consensus       227 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~  306 (438)
T 1qgc_4          227 GGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRS  306 (438)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCCh
Confidence                            4555  567888764  1                                  123799999999


Q ss_pred             CCCeeeEEEeecCcc
Q psy3272          89 TDFGNYSCVADNNLG  103 (115)
Q Consensus        89 ~d~G~y~C~~~n~~~  103 (115)
                      +|.|.|+|.|.|..+
T Consensus       307 ~D~G~Y~C~a~n~~~  321 (438)
T 1qgc_4          307 ADTAMYYCVRREDGG  321 (438)
T ss_dssp             GGCCEEEEEECCSSS
T ss_pred             hhCEEEEEEEEccCC
Confidence            999999999998443

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.53  E-value=1.5e-13  Score=81.74  Aligned_cols=91  Identities=20%  Similarity=0.258  Sum_probs=64.4

Q ss_pred             CCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCc-----ce--eEEEEE-----------------------------
Q psy3272          19 DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG-----RA--KKYMEL-----------------------------   62 (115)
Q Consensus        19 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~-----~~--~~~~~v-----------------------------   62 (115)
                      .++.+........|.|.+++.+|+|.|.|.+.+..+     ..  ...+.|                             
T Consensus        64 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C  143 (218)
T 3s96_B           64 DRFSGSSSGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVC  143 (218)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEE
T ss_pred             cceEEecCCceEEEEEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEE
Confidence            466655556678899999999999999999977553     11  112222                             


Q ss_pred             --ec-ccCC-cEEEEEeCCe--------------------EEEEEeccCCCCCeeeEEEeecCccceeeEE
Q psy3272          63 --SV-SVSD-RRLMETRGNK--------------------HTLTIKNVQSTDFGNYSCVADNNLGRAKKYM  109 (115)
Q Consensus        63 --~g-~~~~-~~~~~~~~~~--------------------~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~  109 (115)
                        .| .|.+ .+.|.+++..                    ..|.|......|.|.|+|.|.|..+..++.+
T Consensus       144 ~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  214 (218)
T 3s96_B          144 LISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL  214 (218)
T ss_dssp             EEEEEBSSCCEEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred             EECcccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence              33 4556 7888875421                    1266777777889999999999998766654

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.53  E-value=2.3e-13  Score=79.50  Aligned_cols=82  Identities=16%  Similarity=0.155  Sum_probs=59.0

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE----------------------ecccCCcEEEEEeCCe----
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL----------------------SVSVSDRRLMETRGNK----   78 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v----------------------~g~~~~~~~~~~~~~~----   78 (115)
                      .....|+|.+++.+|+|.|.|.+.+.. ....  .|.|                      .+.|.|.+.|..++..    
T Consensus        66 ~~~~sL~I~~v~~~D~G~Y~C~v~~~~-~~~~~~~L~V~~~~~~P~i~~~~~~v~L~C~~~~gp~p~i~W~~~~~~l~~~  144 (180)
T 2dru_A           66 KTNGALRIYNVSKEDRGDYYMRMLHET-EDQWKITMEVYEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSL  144 (180)
T ss_dssp             TTTCCEEECSCCGGGCEEEEEEEESSS-EEEEEEEEEEECCCCCCEEEEEGGGTEEEEECSSCTTCEEEEEETTEEEEEE
T ss_pred             CCCccEEEcCCCHHHCeEEEEEEEcCC-eEEEEEEEEEECCCCCCEEEecCCCEEEEEEeCCCCCCEEEEEECCeECcCC
Confidence            345679999999999999999987654 2222  3443                      1237888899876632    


Q ss_pred             --EEEEEeccCCCCCeeeEEEeecCccceeeEEEE
Q psy3272          79 --HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL  111 (115)
Q Consensus        79 --~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l  111 (115)
                        ..|.+..  ..|.|.|+|.|.|..+...+...+
T Consensus       145 ~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~i  177 (180)
T 2dru_A          145 RQKTMSYQW--TNLRAPFKCKAVNRVSQESEMEVV  177 (180)
T ss_dssp             SSSEEEEEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred             CCCEEEEEE--hhcCccEEEEEecCcCccccceeE
Confidence              2455532  789999999999999987665443

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.53  E-value=2.2e-13  Score=85.53  Aligned_cols=86  Identities=15%  Similarity=0.225  Sum_probs=63.5

Q ss_pred             CeEEEEEecCCCCCCeEEEEEee-cCCcceeE--EEEE---------------------------------ecccCCcEE
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVAD-NNLGRAKK--YMEL---------------------------------SVSVSDRRL   71 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~-~~~~~~~~--~~~v---------------------------------~g~~~~~~~   71 (115)
                      ....|.|.+++.+|+|.|.|.+. +..+....  .+.|                                 .|.|.+.+.
T Consensus        90 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~  169 (331)
T 3u83_A           90 TDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVS  169 (331)
T ss_dssp             SBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEE
T ss_pred             CCceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEE
Confidence            45679999999999999999843 33333222  2222                                 457788888


Q ss_pred             EEEeCC-----------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          72 METRGN-----------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        72 ~~~~~~-----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      |.++..                 ...|.|..+...|.|.|+|.+.|..+..+..+.|.|
T Consensus       170 W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V  228 (331)
T 3u83_A          170 WETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNV  228 (331)
T ss_dssp             EEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCE
T ss_pred             EEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEE
Confidence            887321                 135888888999999999999999988777777665

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.52  E-value=9.3e-14  Score=85.82  Aligned_cols=76  Identities=12%  Similarity=0.103  Sum_probs=58.7

Q ss_pred             CCCCeEEEEEeecCCcceeE---EEEE-----------------------------ecccCCcEEEEEeC----------
Q psy3272          39 STDFGNYSCVADNNLGRAKK---YMEL-----------------------------SVSVSDRRLMETRG----------   76 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~---~~~v-----------------------------~g~~~~~~~~~~~~----------   76 (115)
                      ..|+|.|.|.+.+..+...+   .+.|                             .|.|.+.+.|..++          
T Consensus       150 ~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~  229 (289)
T 3mjg_X          150 IFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPV  229 (289)
T ss_dssp             CCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCE
T ss_pred             eccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCccccc
Confidence            57999999999865543322   2222                             56888888998432          


Q ss_pred             ----------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          77 ----------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        77 ----------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                                ....|.|.++..+|.|.|+|.|.|..|.....+.|.|.
T Consensus       230 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~  277 (289)
T 3mjg_X          230 TDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINIT  277 (289)
T ss_dssp             EEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEE
T ss_pred             ccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEE
Confidence                      12589999999999999999999999998888877764

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.52  E-value=2.8e-13  Score=84.15  Aligned_cols=104  Identities=18%  Similarity=0.254  Sum_probs=76.5

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEec-CCCCCCeEEEEEeecCCcceeE--EEEEecccCCc--------
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKN-VQSTDFGNYSCVADNNLGRAKK--YMELSVSVSDR--------   69 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~y~C~~~~~~~~~~~--~~~v~g~~~~~--------   69 (115)
                      .|.|.|++++..+..  ..++..........|.|.+ +..+|.|.|.|.+.|..+....  .+.|.+.|.+.        
T Consensus       133 ~p~i~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~~~~  210 (305)
T 2nzi_A          133 DPVITWQKGQDLIDN--NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDV  210 (305)
T ss_dssp             CCEEEEEESSSBCCS--SSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEESC
T ss_pred             CCEEEEEECCEECCC--CCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCceeeec
Confidence            368999999988876  6666665556678899999 9999999999999999887766  44443322111        


Q ss_pred             ------EEE--------------------------EEe--CCeEEEEEeccCCCCCeeeEEEeecCcccee
Q psy3272          70 ------RLM--------------------------ETR--GNKHTLTIKNVQSTDFGNYSCVADNNLGRAK  106 (115)
Q Consensus        70 ------~~~--------------------------~~~--~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~  106 (115)
                            +.|                          ...  .....+.|.++...+.|.|+|.|.|..|...
T Consensus       211 ~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~  281 (305)
T 2nzi_A          211 SRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSK  281 (305)
T ss_dssp             CSSCEEEEEECCSCCSBSCEEEEEEEEEETTSCCEEEEEEESSSEEEECSCCSSCEEEEEEEEEETTEECC
T ss_pred             cCCEEEEEEcCCccCCCCceeEEEEEEecCCCCccEECccccCceEEecCCCCCCeEEEEEEEEeCCcccC
Confidence                  111                          110  0123688999999999999999999998743

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.52  E-value=1.3e-12  Score=79.22  Aligned_cols=86  Identities=24%  Similarity=0.336  Sum_probs=60.1

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCCcce------eE----------------------------EEE
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLGRA------KK----------------------------YME   61 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~------~~----------------------------~~~   61 (115)
                      ..++.+...  .....|.|.+++.+|+|.|.|.+.+..+..      ..                            .+.
T Consensus        67 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (247)
T 2ghw_B           67 KGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLS  146 (247)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEE
T ss_pred             cCcEEEEEeCCCCEEEEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEE
Confidence            356655432  346789999999999999999998761110      00                            111


Q ss_pred             E------------ecccCCcEEEEEe--C---------------------------CeEEEEEeccCCCCCeeeEEEeec
Q psy3272          62 L------------SVSVSDRRLMETR--G---------------------------NKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        62 v------------~g~~~~~~~~~~~--~---------------------------~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      +            .|.|.+.+.|.+.  +                           ....|.|.++..+|+|.|+|.|.|
T Consensus       147 v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  226 (247)
T 2ghw_B          147 LSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRS  226 (247)
T ss_dssp             ECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECS
T ss_pred             ecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEcc
Confidence            1            4566778888772  1                           133699999999999999999998


Q ss_pred             Ccc
Q psy3272         101 NLG  103 (115)
Q Consensus       101 ~~~  103 (115)
                      ...
T Consensus       227 ~~~  229 (247)
T 2ghw_B          227 NWP  229 (247)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            643

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.51  E-value=5.1e-14  Score=88.22  Aligned_cols=98  Identities=15%  Similarity=0.243  Sum_probs=66.7

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCc-----cee--EEEEE-----------
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG-----RAK--KYMEL-----------   62 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~-----~~~--~~~~v-----------   62 (115)
                      .|.+.|+|+|..+..  ...    .......|.|.+++.+|+|.|.|.+.+..+     ...  ..+.|           
T Consensus        51 ~~~~~W~k~g~~~~~--~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~  124 (316)
T 3vh8_G           51 FNNFMLYKEDRIHIP--IFH----GRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLA  124 (316)
T ss_dssp             CCSEEEEESSCSSSC--HHH----HCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEE
T ss_pred             CceEEEEeCCCccce--eec----CCcceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEe
Confidence            368999999976543  100    112356799999999999999999874221     111  13333           


Q ss_pred             -----------------ecccCCcEEEEEeCC----------------eEEEEEeccCCCCCeeeEEEeecCccc
Q psy3272          63 -----------------SVSVSDRRLMETRGN----------------KHTLTIKNVQSTDFGNYSCVADNNLGR  104 (115)
Q Consensus        63 -----------------~g~~~~~~~~~~~~~----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~  104 (115)
                                       ...+.+.+.|.+++.                ...|.|.++..+|+|.|+|.|.|..+.
T Consensus       125 ~~~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~  199 (316)
T 3vh8_G          125 HPGPLVKSGERVILQCWSDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTP  199 (316)
T ss_dssp             ESCSEEETTCCEEEEEEESSCCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCT
T ss_pred             cCCCccCCCCeEEEEEcCCCCCcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCC
Confidence                             113445667766542                246999999999999999999998774

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.51  E-value=2.4e-13  Score=90.22  Aligned_cols=109  Identities=18%  Similarity=0.275  Sum_probs=73.1

Q ss_pred             cceEEEECC--EEeC----------CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcce-----eEEEEE--
Q psy3272           2 GMMSWYQDT--FLIE----------PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA-----KKYMEL--   62 (115)
Q Consensus         2 p~v~W~~~~--~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-----~~~~~v--   62 (115)
                      |.|.|+|++  ..+.          .....++..........|.|.+++.+|+|.|.|.+.+..+..     ...+.|  
T Consensus        30 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~  109 (523)
T 2rcj_C           30 ITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLG  109 (523)
T ss_pred             ceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEEEEEEEccCCCccccccCceEEEecc
Confidence            679999974  2111          001244443333456789999999999999999999864311     112222  


Q ss_pred             -----------------------------ecccCC--cEEEEEeCCe---------------------EEEEEeccCCCC
Q psy3272          63 -----------------------------SVSVSD--RRLMETRGNK---------------------HTLTIKNVQSTD   90 (115)
Q Consensus        63 -----------------------------~g~~~~--~~~~~~~~~~---------------------~~l~i~~~~~~d   90 (115)
                                                   .|.|++  .+.|.+++..                     ..|.|.++..+|
T Consensus       110 ~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d  189 (523)
T 2rcj_C          110 QPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKS  189 (523)
T ss_pred             CCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCC
Confidence                                         344443  7888776521                     258999999999


Q ss_pred             CeeeEEEeecCccceeeEEE
Q psy3272          91 FGNYSCVADNNLGRAKKYME  110 (115)
Q Consensus        91 ~G~y~C~~~n~~~~~~~~~~  110 (115)
                      .|.|+|.|.|..+.....+.
T Consensus       190 ~G~Y~C~a~n~~~~~~~~~~  209 (523)
T 2rcj_C          190 HRSYSCQVTHEGSTVEKTVA  209 (523)
T ss_pred             CceEEEEEEecCccccccee
Confidence            99999999999887655544

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.51  E-value=1.6e-12  Score=79.59  Aligned_cols=84  Identities=19%  Similarity=0.333  Sum_probs=59.6

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCCcc-----e--eEEEEE---------------------------
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLGR-----A--KKYMEL---------------------------   62 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~-----~--~~~~~v---------------------------   62 (115)
                      .++.+...  .....|.|.+++.+|+|.|.|.+.+..+.     .  ...|.|                           
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~  145 (256)
T 1nqb_A           66 SKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRS  145 (256)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEE
T ss_pred             CeEEEEEecCCCEEEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEe
Confidence            55555432  34678999999999999999999986431     1  012322                           


Q ss_pred             ecccCC-----cEEEEEe--CC---------------------------eEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          63 SVSVSD-----RRLMETR--GN---------------------------KHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        63 ~g~~~~-----~~~~~~~--~~---------------------------~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      .|.|.+     .+.|.+.  +.                           ...|.|.++..+|+|.|+|.+.|..
T Consensus       146 ~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  219 (256)
T 1nqb_A          146 SQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHV  219 (256)
T ss_dssp             SSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             cCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCC
Confidence            345544     7888772  21                           2369999999999999999999854

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.51  E-value=1.2e-13  Score=86.58  Aligned_cols=108  Identities=14%  Similarity=0.141  Sum_probs=66.2

Q ss_pred             cceEEEECCEEeCCCCCCCEE-EEEeCCeEEEEEecCCCCCCeEEEEEeecCCcc-------eeEEEEE-----------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRL-METRGNKHTLTIKNVQSTDFGNYSCVADNNLGR-------AKKYMEL-----------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~-------~~~~~~v-----------   62 (115)
                      +.+.|+|++..+..  ..... .........|.|.+++.+|+|.|.|.+.+..+.       ....+.|           
T Consensus       147 ~~~~w~k~g~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~  224 (316)
T 3vh8_G          147 EHFFLHKEGISKDP--SRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSA  224 (316)
T ss_dssp             SEEEEEETTCCSCC--EEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEE
T ss_pred             cEEEEEECCCcccc--ceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEe
Confidence            57899999876643  11100 000123578999999999999999999987653       1113333           


Q ss_pred             -----------------ecccCCcEEEEEeCC----------------eEEEEEeccCCCCCeeeEEEeecCccc-----
Q psy3272          63 -----------------SVSVSDRRLMETRGN----------------KHTLTIKNVQSTDFGNYSCVADNNLGR-----  104 (115)
Q Consensus        63 -----------------~g~~~~~~~~~~~~~----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~-----  104 (115)
                                       ...|.+.+.|.+++.                ...|.|.+++  |+|.|+|.+.|..+.     
T Consensus       225 ~~~~~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~  302 (316)
T 3vh8_G          225 QPGPKVQAGESVTLSCSSRSSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSD  302 (316)
T ss_dssp             ESCSCCCTTSCCEEEEEESSCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECC
T ss_pred             CCCCeecCCCcEEEEEECCCCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccC
Confidence                             114556778877652                1578899998  999999999997653     


Q ss_pred             eeeEEEEEE
Q psy3272         105 AKKYMELSE  113 (115)
Q Consensus       105 ~~~~~~l~v  113 (115)
                      .+..+.|.|
T Consensus       303 ~S~~~~l~V  311 (316)
T 3vh8_G          303 PSDPLLVSV  311 (316)
T ss_dssp             CCCCEEC--
T ss_pred             CCCcEEEEE
Confidence            344555554

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.51  E-value=2.2e-13  Score=80.85  Aligned_cols=90  Identities=11%  Similarity=0.114  Sum_probs=60.7

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCCccee-EEEEE-------------------------------e
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMEL-------------------------------S   63 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~-~~~~v-------------------------------~   63 (115)
                      ..++.+...  .....|.|.+++.+|+|.|.|.+.+...... ..+.|                               .
T Consensus        64 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~  143 (210)
T 3d9a_H           64 KSRISITRDTSKNQYYLDLNSVTTEDTATYYCANWDGDYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVK  143 (210)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEETTSSCBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEE
T ss_pred             CceEEEEecCCCCEEEEEECCCCcccCEEEEEEEecCcccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEe
Confidence            345554432  2356899999999999999999986421100 11211                               3


Q ss_pred             cc-cCC-cEEEEEeCC------------------eEEEEEeccCCCCCeeeEEEeecCccceeeE
Q psy3272          64 VS-VSD-RRLMETRGN------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKY  108 (115)
Q Consensus        64 g~-~~~-~~~~~~~~~------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~  108 (115)
                      |. |.| .+.|..++.                  ...|.|..+...| |.|+|.|.|..+.....
T Consensus       144 g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  207 (210)
T 3d9a_H          144 GYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD  207 (210)
T ss_dssp             EEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             eEecCCcEEEEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence            44 777 788866543                  1248888888766 99999999999886544

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.51  E-value=1.8e-13  Score=81.18  Aligned_cols=85  Identities=14%  Similarity=0.143  Sum_probs=60.7

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCCcce------eEEEEE---------------------------ec----ccCCcEE
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNLGRA------KKYMEL---------------------------SV----SVSDRRL   71 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~------~~~~~v---------------------------~g----~~~~~~~   71 (115)
                      ...|.|.+++.+|+|.|.|.+.+..+..      ...|.|                           .|    .|.|.+.
T Consensus        81 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~G~~v~L~C~~~~~~~~~p~p~v~  160 (214)
T 2zg1_A           81 NCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFS  160 (214)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--CCCCTTCCEEEEEECTTCCSCSSCCEEE
T ss_pred             eEEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCccccCCCeEEEEEEeccCCCCCCCceEE
Confidence            4579999999999999999998764211      113333                           22    3778889


Q ss_pred             EEEeCC---------eEEEEEeccCCCCCeeeEEEeecCccc--eeeEEEEEE
Q psy3272          72 METRGN---------KHTLTIKNVQSTDFGNYSCVADNNLGR--AKKYMELSE  113 (115)
Q Consensus        72 ~~~~~~---------~~~l~i~~~~~~d~G~y~C~~~n~~~~--~~~~~~l~v  113 (115)
                      |..++.         ...|.|..+...|.|.|+|.|.|..+.  .+..+.|.|
T Consensus       161 W~~~~~~~~~~~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V  213 (214)
T 2zg1_A          161 WTGNALSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV  213 (214)
T ss_dssp             EESSTTSSSCSSCCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred             EeCCCCccCCCCceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence            987642         357999999999999999999998654  455665544

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.51  E-value=9.6e-13  Score=79.42  Aligned_cols=99  Identities=21%  Similarity=0.280  Sum_probs=66.9

Q ss_pred             cceEEEECC--EE---eC-------CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcce---eEEEEE----
Q psy3272           2 GMMSWYQDT--FL---IE-------PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA---KKYMEL----   62 (115)
Q Consensus         2 p~v~W~~~~--~~---~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~---~~~~~v----   62 (115)
                      |.|.|+|+.  ..   +.       .....++..........|.|.+++.+|+|.|.|.+.+..+..   ...+.|    
T Consensus        35 ~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~  114 (240)
T 1moe_A           35 GFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGG  114 (240)
T ss_dssp             ECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCS
T ss_pred             ceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCC
Confidence            579999952  21   10       101346665555566789999999999999999998764321   112222    


Q ss_pred             -----------------------------eccc--CCcEEEEEeC-----------------------------------
Q psy3272          63 -----------------------------SVSV--SDRRLMETRG-----------------------------------   76 (115)
Q Consensus        63 -----------------------------~g~~--~~~~~~~~~~-----------------------------------   76 (115)
                                                   .|.|  .+.+.|.+..                                   
T Consensus       115 ~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  194 (240)
T 1moe_A          115 SGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTS  194 (240)
T ss_dssp             CCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETT
T ss_pred             CCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEccc
Confidence                                         3444  3578887741                                   


Q ss_pred             -CeEEEEEeccCCCCCeeeEEEeec
Q psy3272          77 -NKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        77 -~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                       ....|.|.++..+|+|.|+|.|.+
T Consensus       195 ~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          195 SNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             CCEEEEEECcCCHHHCEEEEEEEEe
Confidence             113699999999999999999994

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.51  E-value=1.3e-12  Score=79.29  Aligned_cols=51  Identities=31%  Similarity=0.596  Sum_probs=36.4

Q ss_pred             cceEEEECCE-----Ee-------CCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           2 GMMSWYQDTF-----LI-------EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         2 p~v~W~~~~~-----~~-------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      |.|.|+|...     .+       ......++..........|.|.+++.+|+|.|.|.+.+.
T Consensus        34 ~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~   96 (250)
T 3esu_F           34 NYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTYFCQQGNT   96 (250)
T ss_dssp             TCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             ceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEEEEEEeeC
Confidence            5799999531     11       111145666555566779999999999999999999764

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.50  E-value=2.4e-13  Score=81.77  Aligned_cols=108  Identities=19%  Similarity=0.245  Sum_probs=72.7

Q ss_pred             ceEEEECC--EEe----------CCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcc---ee--EEEEE---
Q psy3272           3 MMSWYQDT--FLI----------EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR---AK--KYMEL---   62 (115)
Q Consensus         3 ~v~W~~~~--~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~---~~--~~~~v---   62 (115)
                      .|.|+|++  ..+          ......++..........|.|.+++.+|+|.|.|.+.+..+.   ..  ..+.|   
T Consensus        52 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~  131 (234)
T 2j6e_L           52 YVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQ  131 (234)
T ss_dssp             CCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCC
T ss_pred             eEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecC
Confidence            59999963  221          000134565554556779999999999999999999876541   10  01111   


Q ss_pred             ----------------------------ecc-cC-CcEEEEEeCCe---------------------EEEEEeccCCCCC
Q psy3272          63 ----------------------------SVS-VS-DRRLMETRGNK---------------------HTLTIKNVQSTDF   91 (115)
Q Consensus        63 ----------------------------~g~-~~-~~~~~~~~~~~---------------------~~l~i~~~~~~d~   91 (115)
                                                  .|. |. +.+.|.+++..                     ..|.|..+..+|.
T Consensus       132 ~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~  211 (234)
T 2j6e_L          132 PKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSH  211 (234)
T ss_dssp             CCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTS
T ss_pred             CCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCC
Confidence                                        333 33 37888875421                     2578888888999


Q ss_pred             eeeEEEeecCccceeeEEE
Q psy3272          92 GNYSCVADNNLGRAKKYME  110 (115)
Q Consensus        92 G~y~C~~~n~~~~~~~~~~  110 (115)
                      |.|+|.|.|.....++++.
T Consensus       212 G~Y~C~a~n~~~~~~~~~~  230 (234)
T 2j6e_L          212 RSYSCQVTHEGSTVEKTVA  230 (234)
T ss_dssp             CCEEEEEEBTTBCCCEEEC
T ss_pred             CeEEEEEEeCCCceEEecc
Confidence            9999999999887666543

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.50  E-value=3e-13  Score=79.95  Aligned_cols=97  Identities=11%  Similarity=0.131  Sum_probs=62.4

Q ss_pred             cceEEEECCEEeCCCCCCCEE-EEEeCCeEEEEEecCCCCCCeEEEEEeecCCc-----c--eeEEEEEe----------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRL-METRGNKHTLTIKNVQSTDFGNYSCVADNNLG-----R--AKKYMELS----------   63 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~-----~--~~~~~~v~----------   63 (115)
                      |.+.|+|+|..+..  ..... .........|.|.+++.+|+|.|.|.+.+...     .  ....+.|.          
T Consensus        36 ~~~~w~k~g~~~~~--~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~  113 (201)
T 1nkr_A           36 EHFLLHREGMFNDT--LRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSA  113 (201)
T ss_dssp             SEEEEEEESSSCEE--EEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEE
T ss_pred             CEEEEEECCCcCCc--ceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceec
Confidence            67999999875432  11000 00012357899999999999999999965321     1  11133331          


Q ss_pred             ------------------cccCCcEEEEEeCC----------------eEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          64 ------------------VSVSDRRLMETRGN----------------KHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        64 ------------------g~~~~~~~~~~~~~----------------~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                                        ..+.+.+.|.+++.                ...|.|.+++  |+|.|+|.|.+..
T Consensus       114 ~p~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          114 QPGPTVLAGENVTLSCSSRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             ESCSEECTTCEEEEEEEESSCCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred             CCCCccCCCCeEEEEEeCCCCCceEEEEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence                              12456677877542                3468999998  9999999999653

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.50  E-value=4.8e-13  Score=79.37  Aligned_cols=91  Identities=19%  Similarity=0.264  Sum_probs=61.8

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCccee---EEEEE------------------------------ec
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK---KYMEL------------------------------SV   64 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~---~~~~v------------------------------~g   64 (115)
                      ..++..........|.|.+++.+|+|.|.|.+.+..+...   ..+.|                              .|
T Consensus        59 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g  138 (213)
T 3r06_A           59 PSRFSGSGSGRDSSFTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNN  138 (213)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEE
T ss_pred             CCcEEEeccCCEEEEEECCCCcccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEee
Confidence            4566655556678999999999999999999986532111   12222                              33


Q ss_pred             ccC--CcEEEEEeCCe----------------------EEEEEeccCCCCCeeeEEEeecCccceeeE
Q psy3272          65 SVS--DRRLMETRGNK----------------------HTLTIKNVQSTDFGNYSCVADNNLGRAKKY  108 (115)
Q Consensus        65 ~~~--~~~~~~~~~~~----------------------~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~  108 (115)
                      .++  +.+.|.+++..                      ..|.|......|.|.|+|.+.|........
T Consensus       139 ~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~~~~  206 (213)
T 3r06_A          139 FYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTAAIV  206 (213)
T ss_dssp             EBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEE
T ss_pred             ecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCcceE
Confidence            333  37788775421                      246677777788999999999987654433

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.50  E-value=9.8e-13  Score=80.43  Aligned_cols=85  Identities=26%  Similarity=0.358  Sum_probs=59.6

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCCc-------ce----eEEEEE----------------------
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLG-------RA----KKYMEL----------------------   62 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~-------~~----~~~~~v----------------------   62 (115)
                      ..|+.+...  .....|+|.+++.+|+|.|.|.+.+..+       ..    ...|.|                      
T Consensus        64 ~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~  143 (257)
T 1f3r_B           64 KSRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLT  143 (257)
T ss_dssp             STTEEEEEETTTTEEEEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSC
T ss_pred             CCcEEEEEECCCCEEEEEECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEE
Confidence            345555432  4567899999999999999999987632       00    001111                      


Q ss_pred             --------------------ecccCCcEEEEEe--C---------------------------CeEEEEEeccCCCCCee
Q psy3272          63 --------------------SVSVSDRRLMETR--G---------------------------NKHTLTIKNVQSTDFGN   93 (115)
Q Consensus        63 --------------------~g~~~~~~~~~~~--~---------------------------~~~~l~i~~~~~~d~G~   93 (115)
                                          .|.+.+.+.|.+.  +                           ....|.|.++..+|+|.
T Consensus       144 ~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  223 (257)
T 1f3r_B          144 QSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVAT  223 (257)
T ss_dssp             EETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSE
T ss_pred             ccCCEEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEE
Confidence                                3455667888772  1                           12369999999999999


Q ss_pred             eEEEeecCc
Q psy3272          94 YSCVADNNL  102 (115)
Q Consensus        94 y~C~~~n~~  102 (115)
                      |+|.+.|..
T Consensus       224 Y~C~a~n~~  232 (257)
T 1f3r_B          224 YFCYQYNNG  232 (257)
T ss_dssp             EEEEEESSS
T ss_pred             EEEEEeCCC
Confidence            999999975

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.50  E-value=1.7e-13  Score=73.87  Aligned_cols=56  Identities=27%  Similarity=0.414  Sum_probs=49.3

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+|+|..+..  ..++.+........|.|.++..+|+|.|.|.+.|..|....
T Consensus        42 ~p~v~W~k~g~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   97 (107)
T 3knb_B           42 PPVVVWEKGGQQLAA--SERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYA   97 (107)
T ss_dssp             CCEEEEEETTEECCC--CSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCEEEEEECcccccc--eeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCCEEEE
Confidence            378999999999987  77777666677889999999999999999999999887776

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.49  E-value=7.5e-13  Score=79.79  Aligned_cols=74  Identities=19%  Similarity=0.202  Sum_probs=53.6

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCCcc--------e-eE-------------------------EEEE-----------
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNLGR--------A-KK-------------------------YMEL-----------   62 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~--------~-~~-------------------------~~~v-----------   62 (115)
                      ....|.|.+++.+|+|.|.|.+.+..+.        . ..                         .+.+           
T Consensus        71 ~~~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~  150 (238)
T 2p1y_A           71 ENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCS  150 (238)
T ss_dssp             SBCEEEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEE
T ss_pred             ceEEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEE
Confidence            3568999999999999999999865320        0 00                         1111           


Q ss_pred             -ecccCCcEEEEEeC-------------------------------CeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          63 -SVSVSDRRLMETRG-------------------------------NKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        63 -~g~~~~~~~~~~~~-------------------------------~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                       .|.|.+.+.|.+.+                               ....|.|.++..+|+|.|+|.|.|.
T Consensus       151 ~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  221 (238)
T 2p1y_A          151 YENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDT  221 (238)
T ss_dssp             CCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             EecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeC
Confidence             45667778887642                               1247999999999999999999998

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.49  E-value=2.4e-13  Score=72.43  Aligned_cols=58  Identities=24%  Similarity=0.289  Sum_probs=48.6

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+|+|..+......++.+........|.|.++..+|+|.|.|.+.|..|....
T Consensus        34 ~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   91 (100)
T 3knb_A           34 TPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSA   91 (100)
T ss_dssp             CCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEECCCEEEE
Confidence            3789999999998763244666666667789999999999999999999999988766

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.49  E-value=6.6e-13  Score=86.20  Aligned_cols=105  Identities=23%  Similarity=0.368  Sum_probs=73.8

Q ss_pred             cceEEEECC--EEeC----------CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcce---eEEEEE----
Q psy3272           2 GMMSWYQDT--FLIE----------PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA---KKYMEL----   62 (115)
Q Consensus         2 p~v~W~~~~--~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~---~~~~~v----   62 (115)
                      +.|.|+|++  ..+.          .....++..........|.|.+++.+|+|.|.|.+.+..+..   ...+.|    
T Consensus        35 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~  114 (438)
T 1qgc_4           35 SFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRAD  114 (438)
T ss_dssp             ECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCC
T ss_pred             ceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCC
Confidence            479999963  2210          111356665555667899999999999999999998765421   112222    


Q ss_pred             --------------------------ec-ccCC-cEEEEEeCC----------------------eEEEEEeccCCCCCe
Q psy3272          63 --------------------------SV-SVSD-RRLMETRGN----------------------KHTLTIKNVQSTDFG   92 (115)
Q Consensus        63 --------------------------~g-~~~~-~~~~~~~~~----------------------~~~l~i~~~~~~d~G   92 (115)
                                                .| .|.+ .+.|.+++.                      ...|.|.++..+|.|
T Consensus       115 ~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  194 (438)
T 1qgc_4          115 AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHN  194 (438)
T ss_dssp             BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCC
T ss_pred             CCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCC
Confidence                                      23 5666 788987541                      136899999999999


Q ss_pred             eeEEEeecCcccee
Q psy3272          93 NYSCVADNNLGRAK  106 (115)
Q Consensus        93 ~y~C~~~n~~~~~~  106 (115)
                      .|+|.|.|..+...
T Consensus       195 ~Y~C~a~n~~~~~~  208 (438)
T 1qgc_4          195 SYTCEATHKTSTSP  208 (438)
T ss_dssp             EEEEEEEETTCSSC
T ss_pred             eEEEEEEecccCCc
Confidence            99999999988743

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.48  E-value=2.6e-12  Score=78.32  Aligned_cols=35  Identities=31%  Similarity=0.476  Sum_probs=28.6

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      ..++..........|.|.+++.+|+|.|.|.+.+.
T Consensus        62 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   96 (256)
T 3ux9_B           62 PDRFSGSKSGTSASLAITGLQSEDEADYYCQVRDN   96 (256)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCcEEEEccCCEEEEEECCCChhhCEEEEEEEEEC
Confidence            35666655566778999999999999999999874

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.48  E-value=9.1e-13  Score=80.27  Aligned_cols=105  Identities=23%  Similarity=0.340  Sum_probs=70.5

Q ss_pred             cceEEEECC--EEe----------CCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCccee---EEEEE----
Q psy3272           2 GMMSWYQDT--FLI----------EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK---KYMEL----   62 (115)
Q Consensus         2 p~v~W~~~~--~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~---~~~~v----   62 (115)
                      |.|.|||++  ..+          ......++..........|.|.+++.+|+|.|.|.+.+..+...   ..+.|    
T Consensus        69 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~  148 (252)
T 3bkj_L           69 TYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRAD  148 (252)
T ss_dssp             BCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCC
T ss_pred             CcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCC
Confidence            689999964  111          11113566655555677999999999999999999987543111   12222    


Q ss_pred             --------------------------ec-ccCC-cEEEEEeCCe----------------------EEEEEeccCCCCCe
Q psy3272          63 --------------------------SV-SVSD-RRLMETRGNK----------------------HTLTIKNVQSTDFG   92 (115)
Q Consensus        63 --------------------------~g-~~~~-~~~~~~~~~~----------------------~~l~i~~~~~~d~G   92 (115)
                                                .| .|.+ .+.|.+++..                      ..|.|..+..+|.|
T Consensus       149 ~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g  228 (252)
T 3bkj_L          149 AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHN  228 (252)
T ss_dssp             BCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCC
T ss_pred             cCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCC
Confidence                                      33 3443 6888775421                      24788888889999


Q ss_pred             eeEEEeecCcccee
Q psy3272          93 NYSCVADNNLGRAK  106 (115)
Q Consensus        93 ~y~C~~~n~~~~~~  106 (115)
                      .|+|.+.|......
T Consensus       229 ~Y~C~a~n~~~~~p  242 (252)
T 3bkj_L          229 SYTCEATHKTSTSP  242 (252)
T ss_dssp             EEEEEEECTTCSSC
T ss_pred             eEEEEEEeCCCCCC
Confidence            99999999876643

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.48  E-value=1e-12  Score=82.10  Aligned_cols=78  Identities=14%  Similarity=0.135  Sum_probs=58.1

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecC-CcceeEEEEE------------------------------ecccCCcEEEEEeCC
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNN-LGRAKKYMEL------------------------------SVSVSDRRLMETRGN   77 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~-~~~~~~~~~v------------------------------~g~~~~~~~~~~~~~   77 (115)
                      ...|.|.+++.+|+|.|.|.+... .+.....+.|                              .|.|.+.+.|..++.
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~  157 (313)
T 4fqp_A           78 NASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLG  157 (313)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTC
T ss_pred             ceEEEECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCc
Confidence            357999999999999999988643 3333333322                              467888999987542


Q ss_pred             ------------------eEEEEEeccCCCCCeeeEEEeecCcccee
Q psy3272          78 ------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAK  106 (115)
Q Consensus        78 ------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~  106 (115)
                                        ...|.|......|.|.|+|.|.|..+...
T Consensus       158 ~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~  204 (313)
T 4fqp_A          158 GMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKP  204 (313)
T ss_dssp             CEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSC
T ss_pred             cccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCcc
Confidence                              12588888888999999999999876643

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.47  E-value=3.8e-13  Score=69.50  Aligned_cols=51  Identities=27%  Similarity=0.536  Sum_probs=44.3

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|.|+|+|||.+|..  ..++..........|.|.++..+|+|.|.|.+.+..
T Consensus        24 ~p~v~W~k~g~~l~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~   74 (84)
T 2lu7_A           24 GGPVRWYKDGERLAS--QGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQDS   74 (84)
T ss_dssp             STTCEEEETTEECCC--CSSEEEEECSSCEEEEESSCSSTTCEEEEEECTTTC
T ss_pred             CcEEEEEECCEEccc--cccEEEeecCCeEEEEecCCCCcccEEEEEEECCEE
Confidence            378999999999988  788877777777899999999999999999997643

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.47  E-value=1.8e-12  Score=77.45  Aligned_cols=94  Identities=10%  Similarity=0.104  Sum_probs=64.5

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCCc-----c--eeEEEEE---------------------------
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLG-----R--AKKYMEL---------------------------   62 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~-----~--~~~~~~v---------------------------   62 (115)
                      .++.+...  .....|.|.+++.+|+|.|.|.+.+..+     .  ....+.|                           
T Consensus        68 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L  147 (222)
T 1q9r_B           68 GRFTISRDNSQSILYLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTL  147 (222)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEE
T ss_pred             CceEEEEECCCCeEEEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEE
Confidence            45554432  3467899999999999999999987532     1  0112222                           


Q ss_pred             ----ec-ccCC-cEEEEEeCC------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          63 ----SV-SVSD-RRLMETRGN------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        63 ----~g-~~~~-~~~~~~~~~------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                          .| .|.| .+.|..++.                  ...|.|..+...| |.|+|.|.|..+.......+.+
T Consensus       148 ~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i~~  221 (222)
T 1q9r_B          148 GCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVP  221 (222)
T ss_dssp             EEEEEEEBSSCCEEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEEccEECCCCEEEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEeccC
Confidence                34 3777 788865542                  1247888888889 9999999999998766655543

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.47  E-value=6.8e-13  Score=79.26  Aligned_cols=92  Identities=12%  Similarity=0.152  Sum_probs=63.4

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCCcc-----eeEEEEE-----------------------------
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLGR-----AKKYMEL-----------------------------   62 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~-----~~~~~~v-----------------------------   62 (115)
                      .++.+...  .....|.|.+++.+|+|.|.|.+.+..+.     ....+.|                             
T Consensus        68 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C  147 (220)
T 1pz5_B           68 GRFTISRDDSKSSVYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGC  147 (220)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEE
T ss_pred             CcEEEEEeCCCCeEEEEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEE
Confidence            45554432  23568999999999999999999875321     1112222                             


Q ss_pred             --ecc-cCC-cEEEEEeCC------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEE
Q psy3272          63 --SVS-VSD-RRLMETRGN------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL  111 (115)
Q Consensus        63 --~g~-~~~-~~~~~~~~~------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l  111 (115)
                        .|. |.| .+.|..++.                  ...|.|......| |.|+|.|.|..+..++.+.+
T Consensus       148 ~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~  217 (220)
T 1pz5_B          148 LVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKEI  217 (220)
T ss_dssp             EEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             EEEEEeCCCeEEEEecCCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeecC
Confidence              344 777 888866543                  1347787777756 99999999999987776543

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.47  E-value=2.2e-12  Score=78.61  Aligned_cols=86  Identities=20%  Similarity=0.212  Sum_probs=58.4

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCCccee---E--EEE----------------------------E-
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLGRAK---K--YME----------------------------L-   62 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~---~--~~~----------------------------v-   62 (115)
                      .++.+...  .....|.|.+++.+|+|.|.|.+.+..+...   .  .+.                            + 
T Consensus        67 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~  146 (253)
T 3uzq_A           67 GKATITADTSSNTAYLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVS  146 (253)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEEC
T ss_pred             CcEEEEeecCCCeEEEEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEe
Confidence            45554432  2356799999999999999999987332210   0  111                            1 


Q ss_pred             -----------ecccCC----cEEEEEeC-----------------------------CeEEEEEeccCCCCCeeeEEEe
Q psy3272          63 -----------SVSVSD----RRLMETRG-----------------------------NKHTLTIKNVQSTDFGNYSCVA   98 (115)
Q Consensus        63 -----------~g~~~~----~~~~~~~~-----------------------------~~~~l~i~~~~~~d~G~y~C~~   98 (115)
                                 .+.+.+    .+.|.+..                             ....|.|.++..+|+|.|+|.+
T Consensus       147 ~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~  226 (253)
T 3uzq_A          147 LGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQR  226 (253)
T ss_dssp             TTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEE
Confidence                       334444    77887631                             1236999999999999999999


Q ss_pred             ecCccc
Q psy3272          99 DNNLGR  104 (115)
Q Consensus        99 ~n~~~~  104 (115)
                      .|..+.
T Consensus       227 ~n~~~~  232 (253)
T 3uzq_A          227 SNEVPW  232 (253)
T ss_dssp             CSSSSC
T ss_pred             ccCCCc
Confidence            996543

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=9.4e-13  Score=70.07  Aligned_cols=64  Identities=20%  Similarity=0.242  Sum_probs=51.1

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEEeccc
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV   66 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v~g~~   66 (115)
                      .|.|+|+|+|.++..  ..++.+........|.|.++..+|+|.|.|.+.|........|.|...|
T Consensus        34 ~p~v~W~k~g~~l~~--~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~~~~~a~L~V~~~P   97 (100)
T 2yuz_A           34 NIPGKWTKNGLPVQE--SDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHVISGP   97 (100)
T ss_dssp             CCCEEEEETTEECCC--CSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSSCCCEEEEEEEECCS
T ss_pred             CCeEEEEECCEECCC--CCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCCCeeEEEEEEEeCCC
Confidence            378999999999987  7888777666678999999999999999999998733344466665433

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.45  E-value=5.8e-13  Score=82.11  Aligned_cols=105  Identities=14%  Similarity=0.165  Sum_probs=69.7

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE------------------
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL------------------   62 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v------------------   62 (115)
                      .|.|++++....       ..........|.|.+++.+|+|.|.|.+.+..+....  .|.|                  
T Consensus        31 ~v~W~~~~~~~~-------~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~  103 (289)
T 3ejj_X           31 SVEWDGPISPYW-------TLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVE  103 (289)
T ss_dssp             CCEEECSCSSSS-------EECCCSSCCEEEESSCCGGGCEEEEEECCC-----CEEEEEEECCSSCSEEESCSEEEEET
T ss_pred             cEEEccCCCceE-------EEeccCCccEEEEeeeccccCEEEEEEEeccCCcceeEEEEEEeCCCcceecccceEEEec
Confidence            589997764221       1112235678999999999999999999876655444  3443                  


Q ss_pred             ----------ecccCCc-EEEEEeCC-------------eEEEEEeccCCCCCeeeEEEee-cCccceeeEEEEEEe
Q psy3272          63 ----------SVSVSDR-RLMETRGN-------------KHTLTIKNVQSTDFGNYSCVAD-NNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ----------~g~~~~~-~~~~~~~~-------------~~~l~i~~~~~~d~G~y~C~~~-n~~~~~~~~~~l~v~  114 (115)
                                .|.+.+. +.|...+.             ...|.|.++..+|.|.|+|.+. +..+..+..+.|.|.
T Consensus       104 g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~  180 (289)
T 3ejj_X          104 GQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVN  180 (289)
T ss_dssp             TSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEE
Confidence                      2344443 88865321             2369999999999999999999 655666666667664

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.44  E-value=8.3e-12  Score=77.07  Aligned_cols=51  Identities=31%  Similarity=0.530  Sum_probs=36.4

Q ss_pred             cceEEEECCE-----EeC-------CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           2 GMMSWYQDTF-----LIE-------PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         2 p~v~W~~~~~-----~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      |.|.|+|++.     .+.       .....++..........|.|.+++.+|+|.|.|.+.+.
T Consensus        42 ~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~  104 (276)
T 3auv_A           42 TAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQHYT  104 (276)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEEEEEEecC
Confidence            6799998642     111       00134666555556678999999999999999999874

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.44  E-value=1.1e-11  Score=75.67  Aligned_cols=95  Identities=17%  Similarity=0.250  Sum_probs=62.0

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCC----ccee----EE-----------------------------
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNL----GRAK----KY-----------------------------   59 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~----~~~~----~~-----------------------------   59 (115)
                      .++.+...  .....|+|.+++.+|+|.|.|.+.+..    ....    ..                             
T Consensus        68 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~  147 (256)
T 3umt_A           68 GKAILTVDKSSSTAYLELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSS  147 (256)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSE
T ss_pred             ceEEEEEecCCCEEEEEECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCe
Confidence            45554432  345679999999999999999998761    1000    01                             


Q ss_pred             EEE------------ecccCCcEEEEEeC-----------------------------CeEEEEEeccCCCCCeeeEEEe
Q psy3272          60 MEL------------SVSVSDRRLMETRG-----------------------------NKHTLTIKNVQSTDFGNYSCVA   98 (115)
Q Consensus        60 ~~v------------~g~~~~~~~~~~~~-----------------------------~~~~l~i~~~~~~d~G~y~C~~   98 (115)
                      +.+            .+.+.+.+.|.+..                             ....|.|.++..+|+|.|+|.+
T Consensus       148 ~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~  227 (256)
T 3umt_A          148 LSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQ  227 (256)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEE
T ss_pred             EEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEE
Confidence            111            34566678887631                             1235999999999999999999


Q ss_pred             ecCccce-eeEEEEEE
Q psy3272          99 DNNLGRA-KKYMELSE  113 (115)
Q Consensus        99 ~n~~~~~-~~~~~l~v  113 (115)
                      .|..... .....|.|
T Consensus       228 ~~~~~~~fg~gt~L~V  243 (256)
T 3umt_A          228 YASSPPTFGGGTKLEI  243 (256)
T ss_dssp             CSSSSCEECCCEEEEE
T ss_pred             eeCCCcEECCCEEEEE
Confidence            9965432 22344544

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.44  E-value=2.9e-12  Score=78.76  Aligned_cols=97  Identities=11%  Similarity=0.112  Sum_probs=62.1

Q ss_pred             cceEEEECCEEeCCCCCCCEE-EEEeCCeEEEEEecCCCCCCeEEEEEeecCCc-------ceeEEEEEec---------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRL-METRGNKHTLTIKNVQSTDFGNYSCVADNNLG-------RAKKYMELSV---------   64 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~-------~~~~~~~v~g---------   64 (115)
                      +.+.|||+|..+..  ..... .........|.|.+++.+|+|.|.|.+.+...       .....|.|.+         
T Consensus        35 ~~~~W~k~g~~~~~--~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~  112 (257)
T 1b6u_A           35 QHFLLHREGKFKDT--LHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSA  112 (257)
T ss_dssp             SEEEEEEESTTCEE--EEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEEC
T ss_pred             cEEEEEECCCCCCc--ceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEc
Confidence            57899999864421  00000 00012357899999999999999999974321       1111344311         


Q ss_pred             -------------------ccCCcEEEEEeCC----------------eEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          65 -------------------SVSDRRLMETRGN----------------KHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        65 -------------------~~~~~~~~~~~~~----------------~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                                         .+.+.+.|.+++.                ...|.|.+++  |.|.|+|.+.|..
T Consensus       113 ~p~~~V~~G~~vtL~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~  183 (257)
T 1b6u_A          113 QPGPTVLAGESVTLSCSSRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRD  183 (257)
T ss_dssp             SSCTTCBTTCEEEEEEECSSCCSEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSS
T ss_pred             cCCCccCCCCEEEEEEeCCCCCcEEEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCC
Confidence                               2235677877542                4579999998  9999999999753

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.44  E-value=4.7e-12  Score=76.78  Aligned_cols=85  Identities=18%  Similarity=0.230  Sum_probs=60.4

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE--------------------------ec-ccCC-cEEEEEeCC-
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL--------------------------SV-SVSD-RRLMETRGN-   77 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v--------------------------~g-~~~~-~~~~~~~~~-   77 (115)
                      ...|.|.+++.+|+|.|.|.+.+..+....  .|.|                          .| .|.+ .+.|.+++. 
T Consensus        81 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~  160 (248)
T 3pv7_A           81 DASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQK  160 (248)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC--------CEEEEEEEEEBSSCCEEEEEEECSS
T ss_pred             cEEEEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecCCccccCCCcEEEEEEccEECCCeEEEEEECCcc
Confidence            345999999999999999999887654443  3333                          34 6788 899988763 


Q ss_pred             --------------------------eEEEEEeccCCCCCeeeEEEeecCccc--eeeEEEEEE
Q psy3272          78 --------------------------KHTLTIKNVQSTDFGNYSCVADNNLGR--AKKYMELSE  113 (115)
Q Consensus        78 --------------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~--~~~~~~l~v  113 (115)
                                                ...|.|......|.|.|+|.+.|..+.  ....+.|.|
T Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          161 FPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             SCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             CCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence                                      125777778888999999999999887  333444443

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.43  E-value=1.5e-13  Score=94.57  Aligned_cols=103  Identities=25%  Similarity=0.305  Sum_probs=35.5

Q ss_pred             cceEEEECCEEeCCCCCCCEEE--------EEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE---------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLM--------ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL---------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~--------~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v---------   62 (115)
                      +.+.|++++..+..  ......        ........|.|.++..+|+|.|.|.+.+..+....  .+.|         
T Consensus       256 ~~~~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~  333 (772)
T 3v2a_R          256 IDFNWEYPSSKHQH--KKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFG  333 (772)
T ss_dssp             CEEEEECC----------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC----
T ss_pred             eeEEEecCCccCCC--ceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEec
Confidence            46899999886543  222111        01123568999999999999999999987665444  3433         


Q ss_pred             ---------------------ecccCCcEEEEEeCC----------eEEEEEeccCCCCCeeeEEEeecCcccee
Q psy3272          63 ---------------------SVSVSDRRLMETRGN----------KHTLTIKNVQSTDFGNYSCVADNNLGRAK  106 (115)
Q Consensus        63 ---------------------~g~~~~~~~~~~~~~----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~  106 (115)
                                           .|.|.+.+.|.+++.          ...|.|.++..+|.|.|+|.+.|..|...
T Consensus       334 ~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  408 (772)
T 3v2a_R          334 SGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEK  408 (772)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             cCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceEccceeEEEecCChhcCceEEEEEEECCcCeE
Confidence                                 446777888877652          26799999999999999999999988643

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.43  E-value=1.8e-11  Score=74.17  Aligned_cols=51  Identities=27%  Similarity=0.443  Sum_probs=36.3

Q ss_pred             cceEEEECC--EE---eC-------CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           2 GMMSWYQDT--FL---IE-------PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         2 p~v~W~~~~--~~---~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      |.|.|+|+.  ..   +.       .....++..........|.|.+++.+|+|.|.|.+.+.
T Consensus        31 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~   93 (242)
T 2znx_A           31 NNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNS   93 (242)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             ceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEEEEeEecC
Confidence            689999953  11   10       00134666554556778999999999999999999875

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.43  E-value=5.2e-12  Score=79.39  Aligned_cols=106  Identities=10%  Similarity=0.111  Sum_probs=61.7

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEE-----eCCeEEEEEecCCCCCCeEEEEEeecCCcce---eEE------------EEE
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMET-----RGNKHTLTIKNVQSTDFGNYSCVADNNLGRA---KKY------------MEL   62 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~---~~~------------~~v   62 (115)
                      .|+|+++|.++..  ........     ......|.|.....+|.|.|.|.+.+..+..   ...            +.+
T Consensus       150 ~v~W~k~g~~l~~--~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~  227 (327)
T 2wng_A          150 TLKWFKNGNELSD--FQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEV  227 (327)
T ss_dssp             EEEEEETTEECCC--EEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEE
T ss_pred             EEEEEECCEEccc--cccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEE
Confidence            7999999998864  21100000     0013457777776677899999999865442   111            111


Q ss_pred             -----------------ecccCC--cEEEEEeCCe--------------------EEEEEeccCCCCCeeeEEEeecCcc
Q psy3272          63 -----------------SVSVSD--RRLMETRGNK--------------------HTLTIKNVQSTDFGNYSCVADNNLG  103 (115)
Q Consensus        63 -----------------~g~~~~--~~~~~~~~~~--------------------~~l~i~~~~~~d~G~y~C~~~n~~~  103 (115)
                                       .|.+++  .+.|.+++..                    ..|.|..+..+|.|.|+|.|.|..+
T Consensus       228 ~~~~~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~  307 (327)
T 2wng_A          228 TQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQ  307 (327)
T ss_dssp             EEECCSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTC
T ss_pred             ecCCcCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCC
Confidence                             454443  6888876531                    2477888888999999999999998


Q ss_pred             ce-eeEEE
Q psy3272         104 RA-KKYME  110 (115)
Q Consensus       104 ~~-~~~~~  110 (115)
                      .. .+.+.
T Consensus       308 ~~~s~~~~  315 (327)
T 2wng_A          308 PAVSKSHD  315 (327)
T ss_dssp             CCEEEEEE
T ss_pred             CCchhheE
Confidence            73 43433

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.42  E-value=1.9e-12  Score=81.35  Aligned_cols=103  Identities=14%  Similarity=0.164  Sum_probs=66.1

Q ss_pred             cceEEEECCEEeC-------CCCCCCEEEEEe-----CCeEEEEEecCCCCCCeEEEEEeecCCcce-------eEEEEE
Q psy3272           2 GMMSWYQDTFLIE-------PSVSDRRLMETR-----GNKHTLTIKNVQSTDFGNYSCVADNNLGRA-------KKYMEL   62 (115)
Q Consensus         2 p~v~W~~~~~~~~-------~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-------~~~~~v   62 (115)
                      |.|+|+|++.+..       .....++.....     .....|.|.+++.+|+|.|.|.+.+..+..       ...+.|
T Consensus        34 ~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V  113 (327)
T 2wng_A           34 GPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSV  113 (327)
T ss_dssp             CCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEE
T ss_pred             ceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEE
Confidence            6899999875321       000123322111     345679999999999999999998865421       113333


Q ss_pred             ----------------------------ecccCC--cEEEEEeCC--------------------eEEEEEeccCCCCCe
Q psy3272          63 ----------------------------SVSVSD--RRLMETRGN--------------------KHTLTIKNVQSTDFG   92 (115)
Q Consensus        63 ----------------------------~g~~~~--~~~~~~~~~--------------------~~~l~i~~~~~~d~G   92 (115)
                                                  .|.|++  .+.|.+++.                    ...|.|......|.|
T Consensus       114 ~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g  193 (327)
T 2wng_A          114 RAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHS  193 (327)
T ss_dssp             EBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGC
T ss_pred             EecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCc
Confidence                                        445555  788877542                    114666666666689


Q ss_pred             eeEEEeecCccc
Q psy3272          93 NYSCVADNNLGR  104 (115)
Q Consensus        93 ~y~C~~~n~~~~  104 (115)
                      .|+|.+.|..+.
T Consensus       194 ~Y~C~a~n~~~~  205 (327)
T 2wng_A          194 QVICEVAHVTLQ  205 (327)
T ss_dssp             EEEEEEECTTSC
T ss_pred             eEEEEEeccccC
Confidence            999999998775

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.42  E-value=1.4e-11  Score=78.79  Aligned_cols=105  Identities=18%  Similarity=0.318  Sum_probs=74.8

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE--EEEec---------------
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY--MELSV---------------   64 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~--~~v~g---------------   64 (115)
                      |.|+|++++..+......++..........|.|.++..+|+|.|.|.+.|..+.....  +.+..               
T Consensus       130 ~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~~~~~~~  209 (389)
T 2jll_A          130 ASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQ  209 (389)
T ss_dssp             CEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEEEEEECS
T ss_pred             CeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceEEeeccC
Confidence            6899999999987632345655555567889999999999999999999988776652  32211               


Q ss_pred             ---------------ccCCcE--EEEEeC-----------CeEEEEEeccCCCCCeeeEEEeecCcccee
Q psy3272          65 ---------------SVSDRR--LMETRG-----------NKHTLTIKNVQSTDFGNYSCVADNNLGRAK  106 (115)
Q Consensus        65 ---------------~~~~~~--~~~~~~-----------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~  106 (115)
                                     .|...+  .|...+           ....+.|.++...+.|.|+|.|.|..|...
T Consensus       210 ~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~  279 (389)
T 2jll_A          210 TTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGD  279 (389)
T ss_dssp             SCEEEEEECCSCCTTSCEEEEEEEEEETTCSCCEEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCC
T ss_pred             CEEEEEEeCCCCCCCcceEEEEEEEEECCCcccEEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCC
Confidence                           111111  122211           124689999999999999999999998643

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.42  E-value=2.2e-12  Score=71.32  Aligned_cols=60  Identities=17%  Similarity=0.273  Sum_probs=48.1

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeC-------CeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRG-------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL   62 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v   62 (115)
                      .|.|+|+|||.+|..  ..++......       ....|.|.++...|+|.|+|.|.|..|.....+.+
T Consensus        29 ~P~I~W~knG~~l~~--~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~~l   95 (126)
T 1he7_A           29 APSLRWLFNGSVLNE--TSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA   95 (126)
T ss_dssp             CCEEEEEETTEECCC--CSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCeEEEEECCEECCC--CCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEEEE
Confidence            489999999999987  6654433221       24689999999999999999999999998876555

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.42  E-value=4e-12  Score=77.66  Aligned_cols=25  Identities=20%  Similarity=0.446  Sum_probs=22.6

Q ss_pred             EEEEeccCCCCCeeeEEEeecCccc
Q psy3272          80 TLTIKNVQSTDFGNYSCVADNNLGR  104 (115)
Q Consensus        80 ~l~i~~~~~~d~G~y~C~~~n~~~~  104 (115)
                      .|.|.++..+|+|.|+|.+.|..|.
T Consensus       211 ~L~I~~v~~~DsG~Y~C~a~n~~g~  235 (256)
T 3tf7_C          211 FLTLESASPSQTSLYFCASSDAPGQ  235 (256)
T ss_dssp             EEEESSCCGGGCEEEEEEEEEETTE
T ss_pred             EEEECCCCHHHCEEEEEEecCCCCc
Confidence            7999999999999999999997553

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.41  E-value=3.4e-12  Score=69.13  Aligned_cols=65  Identities=20%  Similarity=0.275  Sum_probs=52.6

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEecccC
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSVSVS   67 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g~~~   67 (115)
                      .|.|+|+|++..+..  ..++.+........|.|.++..+|+|.|.|.+.|..+....  .|.|.+.|.
T Consensus        36 ~p~i~W~k~~~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~  102 (114)
T 2cqv_A           36 PITCTWMKFRKQIQE--SEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPD  102 (114)
T ss_dssp             SCEEEEEESSSBCCC--SSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSCS
T ss_pred             CCEEEEEECCEECcC--CCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEEEEEECCCC
Confidence            378999999998876  66777666566789999999999999999999998887766  566655443

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.41  E-value=1.2e-12  Score=68.83  Aligned_cols=50  Identities=24%  Similarity=0.184  Sum_probs=43.6

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      |.|+|+|+|.++..  ..++.+........|.|.++..+|+|.|.|.+.|..
T Consensus        34 ~~v~W~k~g~~i~~--~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T 1waa_A           34 VHGQWKLKGQPLAA--SPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTK   83 (93)
T ss_dssp             CCCEEEETTEECCC--BTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTEE
T ss_pred             CeEEEEECCEECcC--CCCEEEEEECCEEEEEECCCChhhCEEEEEEECCCc
Confidence            68999999999987  778877666677899999999999999999998743

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.40  E-value=4.1e-12  Score=82.84  Aligned_cols=107  Identities=9%  Similarity=0.066  Sum_probs=72.8

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCccee----------EEEEE----------
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK----------KYMEL----------   62 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~----------~~~~v----------   62 (115)
                      .|+|+|++.++..  ....   .......|.|.++..+|.|.|+|.+.+..+...          ..+.|          
T Consensus       120 ~v~W~k~g~~l~~--~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~  194 (450)
T 1z7z_I          120 TVVLLRGEKELKR--EPAV---GEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQL  194 (450)
T ss_dssp             EEEEEETTEEEEE--EECC---TTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEE
T ss_pred             EEEEeeCCEEeec--cccc---ccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEe
Confidence            7899999998764  2110   012356899999999999999999987643211          01111          


Q ss_pred             ------------------ecc-c--CCcEEEEEeCCe-----------EEEE-EeccCCCCCe--eeEEEeecCccceee
Q psy3272          63 ------------------SVS-V--SDRRLMETRGNK-----------HTLT-IKNVQSTDFG--NYSCVADNNLGRAKK  107 (115)
Q Consensus        63 ------------------~g~-~--~~~~~~~~~~~~-----------~~l~-i~~~~~~d~G--~y~C~~~n~~~~~~~  107 (115)
                                        .|. |  .+.+.|..++..           ..+. ..++..+|.|  .|+|.+.|..|....
T Consensus       195 ~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~  274 (450)
T 1z7z_I          195 VSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQET  274 (450)
T ss_dssp             ECCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCCEEEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEE
T ss_pred             cCceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCceEEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEE
Confidence                              445 5  677788765421           1111 2267899999  999999999998877


Q ss_pred             EEEEEEe
Q psy3272         108 YMELSEL  114 (115)
Q Consensus       108 ~~~l~v~  114 (115)
                      .+.|.|.
T Consensus       275 ~~~l~V~  281 (450)
T 1z7z_I          275 LQTVTIY  281 (450)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            7777664

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.40  E-value=1.8e-12  Score=80.17  Aligned_cols=99  Identities=21%  Similarity=0.341  Sum_probs=69.6

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcce-eEEEEE-------------------
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA-KKYMEL-------------------   62 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~v-------------------   62 (115)
                      .|+|++++..+..        .. ..+..|.|.++..+|+|.|.|.+.+  +.. ...+.|                   
T Consensus        39 ~i~W~~~~~~~~~--------~~-~~~~~L~i~~~~~~d~G~Y~C~~~n--g~~~~~~l~V~~~~~~~~~~~~~~~~~g~  107 (290)
T 2o26_X           39 FVRWTFKTYFNEM--------VE-NKKNEWIQEKAEATRTGTYTCSNSN--GLTSSIYVFVRDPAKLFLVGLPLFGKEDS  107 (290)
T ss_dssp             EEEEEEECSSSCE--------EE-ECSSEEEETTCCGGGCEEEEEEESS--SCEEEEEEEEECSSCCBCCCCCEEEETTS
T ss_pred             cEEEecCCcceee--------ec-CCCceEEEeccCHHhCeEEEEEeeC--CccEEEEEEEeCCCcccccccceEEecCC
Confidence            5899999875511        11 1238899999999999999999988  322 224444                   


Q ss_pred             --------ecccC-CcEEEEE-eCC------------eEEEEEeccCCCCCe-eeEEEeecCcccee-eEEEEEE
Q psy3272          63 --------SVSVS-DRRLMET-RGN------------KHTLTIKNVQSTDFG-NYSCVADNNLGRAK-KYMELSE  113 (115)
Q Consensus        63 --------~g~~~-~~~~~~~-~~~------------~~~l~i~~~~~~d~G-~y~C~~~n~~~~~~-~~~~l~v  113 (115)
                              . .|. +.+.|.. ++.            ...|.|.++..+|.| .|+|.+.|..+... ..+.|.|
T Consensus       108 ~v~l~C~~~-~p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V  181 (290)
T 2o26_X          108 DALVRCPLT-DPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKV  181 (290)
T ss_dssp             CEEECCCBS-CCSCEEEEEEETTSCCCCTTCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEE
T ss_pred             eEEEeCcCC-CCCCceEEEEeCCCcCCCCCCceeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEE
Confidence                    2 355 6788854 221            137999999999999 99999999866533 2455554

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.40  E-value=1.3e-11  Score=75.26  Aligned_cols=34  Identities=21%  Similarity=0.402  Sum_probs=26.6

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      .++.+...  .....|+|.+++.+|+|.|.|.+.+.
T Consensus        72 ~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  107 (256)
T 3juy_B           72 DRVTFTADTSANTAYMELRSLRSADTAVYYCARVGE  107 (256)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCC
T ss_pred             ceEEEEEecCCCEEEEEECCCCcccCEEEEEeEEec
Confidence            45555422  34568999999999999999999875

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.40  E-value=5e-13  Score=70.04  Aligned_cols=49  Identities=31%  Similarity=0.601  Sum_probs=43.6

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      |.|+|+|||.++..  .+++.+........|.|.++..+|+|.|.|.+.+.
T Consensus        35 ~~v~W~k~g~~i~~--~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   83 (91)
T 2lvc_A           35 APVRWYKDGQEVEE--SDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE   83 (91)
T ss_dssp             SCCEEEETTSCCCC--CSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSC
T ss_pred             cEEEEEECCEEeee--eeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcce
Confidence            68999999999987  78887777777889999999999999999999764

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.40  E-value=5.1e-12  Score=76.05  Aligned_cols=94  Identities=7%  Similarity=0.094  Sum_probs=62.3

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCCcce---eEEEEE-------------------------------
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLGRA---KKYMEL-------------------------------   62 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~---~~~~~v-------------------------------   62 (115)
                      .|+.+...  .....|.|.+++.+|+|.|.|.+.+.....   ...|.|                               
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~  145 (227)
T 1mju_H           66 NKATLTVDTSSSTAYMQLSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLV  145 (227)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEE
T ss_pred             CcEEEEEeCCCCeEEEEECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEe
Confidence            45554432  346789999999999999999997642110   001211                               


Q ss_pred             ec-ccCC-cEEEEEeCC------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          63 SV-SVSD-RRLMETRGN------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        63 ~g-~~~~-~~~~~~~~~------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      .| .|.+ .+.|..++.                  ...|.|..+...| |.|+|.|.|..+.......+.+
T Consensus       146 ~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~  215 (227)
T 1mju_H          146 KGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEP  215 (227)
T ss_dssp             EEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCC
T ss_pred             ecEeCCCeEEEEecCCCcCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCC
Confidence            33 3555 777765442                  1257888888777 9999999998877666555544

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.39  E-value=2.4e-12  Score=81.65  Aligned_cols=87  Identities=9%  Similarity=0.153  Sum_probs=59.0

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE-------------------------------
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL-------------------------------   62 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v-------------------------------   62 (115)
                      ..|+.+...  .....|.|.+++.+|+|.|.|.+.+..+....  .+.|                               
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~  144 (344)
T 1za6_B           65 KGKATLTADTSASTAYVELSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLV  144 (344)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEE
T ss_pred             CCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEE
Confidence            345554432  34578999999999999999999874321111  2222                               


Q ss_pred             ecc-cC-CcEEEEEeCCe-------------------EEEEEeccCCCCCeeeEEEeecCccce
Q psy3272          63 SVS-VS-DRRLMETRGNK-------------------HTLTIKNVQSTDFGNYSCVADNNLGRA  105 (115)
Q Consensus        63 ~g~-~~-~~~~~~~~~~~-------------------~~l~i~~~~~~d~G~y~C~~~n~~~~~  105 (115)
                      .|. |. +.+.|.+++..                   ..|.|..+...| |.|+|.|.|..+..
T Consensus       145 ~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~  207 (344)
T 1za6_B          145 KDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  207 (344)
T ss_dssp             EEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTE
T ss_pred             eeEECCCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCc
Confidence            344 54 57888654421                   257888887777 99999999998864

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.38  E-value=1.7e-11  Score=74.32  Aligned_cols=51  Identities=27%  Similarity=0.505  Sum_probs=36.2

Q ss_pred             cceEEEECC--EE---eC-------CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           2 GMMSWYQDT--FL---IE-------PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         2 p~v~W~~~~--~~---~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      |.|.|+|+.  ..   +.       .....++..........|.|.+++.+|+|.|.|.+.+.
T Consensus        36 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~   98 (247)
T 1svz_A           36 TYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSH   98 (247)
T ss_dssp             BCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             ceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            689999842  21   11       00135666555556778999999999999999999875

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.38  E-value=7.3e-12  Score=66.52  Aligned_cols=61  Identities=21%  Similarity=0.410  Sum_probs=51.2

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEe
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELS   63 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~   63 (115)
                      .|.|+|+|++..+..  ..++..........|.|.++..+|+|.|.|.+.|..+....  .|.|.
T Consensus        37 ~p~i~W~k~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   99 (103)
T 3qp3_A           37 TAEVKWYHNGVELQE--SSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT   99 (103)
T ss_dssp             CCEEEEEETTEECCC--CSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEEEECCEECCC--CCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            378999999999987  67777766667789999999999999999999998887766  45543

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.37  E-value=1.6e-11  Score=76.04  Aligned_cols=35  Identities=20%  Similarity=0.309  Sum_probs=27.2

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .++.+...  .....|.|.+++.+|+|.|.|.+.+..
T Consensus        92 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~  128 (282)
T 1qok_A           92 GKATFTTDTSSNTAYLQLSSLTSEDTAVYYCNEGTPT  128 (282)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             CcEEEEEecCCCeEEEEECcCChhhCEEEEEEeccCC
Confidence            45554432  245789999999999999999998764

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.36  E-value=1.8e-11  Score=74.89  Aligned_cols=102  Identities=15%  Similarity=0.220  Sum_probs=68.0

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecC---CCCCCeE--EEEEeecCCcceeE--EEEE-------------
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNV---QSTDFGN--YSCVADNNLGRAKK--YMEL-------------   62 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~d~G~--y~C~~~~~~~~~~~--~~~v-------------   62 (115)
                      .|+|+|++..+..      ...  ..+..+.+...   ...|.|.  |.|.+.+..+....  .|.|             
T Consensus        37 ~v~W~k~~~~l~~------~~~--~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~~~l~V~~~p~p~~~~~~~  108 (265)
T 2oz4_A           37 QVHLALGDQRLNP------TVT--YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKP  108 (265)
T ss_dssp             EEEEEETTEECCC------EEE--ECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESCS
T ss_pred             EEEEEeCCEECCc------eEe--eCCCeEEEEeecccccccCCcceEEEEEecCCCCcEEEEEEEEeCCCCceeecCCc
Confidence            8999999988754      111  12234444444   7788885  99999988766544  4444             


Q ss_pred             ------------ecccCCcEEEEEeC-------CeEEEEEeccCCCCCeeeEEEeecCc-ccee---eEEEEEEe
Q psy3272          63 ------------SVSVSDRRLMETRG-------NKHTLTIKNVQSTDFGNYSCVADNNL-GRAK---KYMELSEL  114 (115)
Q Consensus        63 ------------~g~~~~~~~~~~~~-------~~~~l~i~~~~~~d~G~y~C~~~n~~-~~~~---~~~~l~v~  114 (115)
                                  ...|.+.+.|  ++       ....|.|..+...|.|.|+|.|.|.. |...   ..+.|.|.
T Consensus       109 ~v~~G~~v~l~C~~~p~~~i~W--~g~~~~~~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~  181 (265)
T 2oz4_A          109 EVSEGTEVTVKCEAHPRAKVTL--NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL  181 (265)
T ss_dssp             EEETTCEEEEEEECCTTSEEEE--SSCSSSCCSSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEE
T ss_pred             eecCCCcEEEEEEccCCCEEEE--CCEEccCCCCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEE
Confidence                        1236667777  43       24568899999999999999998544 5544   55556553

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.36  E-value=8.1e-11  Score=71.75  Aligned_cols=34  Identities=26%  Similarity=0.352  Sum_probs=26.4

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      .++.+...  .....|+|.+++.+|+|.|.|.+.+.
T Consensus        73 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~  108 (257)
T 3gkz_A           73 SRISITRDTSKNQVYLQLKSVSSEDTATYYCSYFDS  108 (257)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECT
T ss_pred             ccEEEEEecCCceEEEEECCCChhhCEEEEEEEecC
Confidence            45554432  34568999999999999999999875

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.36  E-value=1.4e-11  Score=64.78  Aligned_cols=55  Identities=22%  Similarity=0.424  Sum_probs=47.9

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      |.|.|+|++..+..  ..++.+........|.|.++..+|+|.|.|.+.|..+....
T Consensus        32 ~~v~W~~~~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~   86 (97)
T 2bk8_A           32 TQVTWYFGVRQLEN--SEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSS   86 (97)
T ss_dssp             CEEEEEETTEECCS--SSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             CEEEEEECCEECcC--CCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEeE
Confidence            68999999998887  77777665666779999999999999999999998887776

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.35  E-value=1.4e-11  Score=64.93  Aligned_cols=55  Identities=20%  Similarity=0.365  Sum_probs=47.9

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      |.|.|+|++..+..  ..++..........|.|.++..+|+|.|.|.+.|..+....
T Consensus        36 p~v~W~~~g~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~   90 (99)
T 3puc_A           36 PTAIWTKDGKAITQ--GGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSS   90 (99)
T ss_dssp             CEEEEEETTEECCS--SSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CEEEEEECCEECcC--CCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeCCCcEeE
Confidence            68999999999887  77777766667779999999999999999999998877665

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.34  E-value=8.2e-13  Score=81.54  Aligned_cols=87  Identities=15%  Similarity=0.160  Sum_probs=61.7

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE----------------------------ecccC--CcEEEEE
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL----------------------------SVSVS--DRRLMET   74 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v----------------------------~g~~~--~~~~~~~   74 (115)
                      .....|.|.+++.+|+|.|.|.+.+..+....  .|.|                            .+ |.  +.+.|..
T Consensus        48 ~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~  126 (292)
T 4dkd_C           48 GSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVR  126 (292)
T ss_dssp             TTEEEEEESSCCGGGCSCEEECCCC----CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEE
T ss_pred             CceEEEEEcccccccCEEEEEEEccCCCCcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEe
Confidence            45679999999999999999999886544433  3333                            22 33  6788877


Q ss_pred             eCC-------------eEEEEEeccCCCCCeeeEEEeecCcccee-eEEEEEEe
Q psy3272          75 RGN-------------KHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELSEL  114 (115)
Q Consensus        75 ~~~-------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~-~~~~l~v~  114 (115)
                      .+.             ...|.|.++..+|.|.|+|.+.|..+... ..+.|.|.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~  180 (292)
T 4dkd_C          127 VRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQ  180 (292)
T ss_dssp             GGGCCCCSSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEE
T ss_pred             cCCCccccCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEe
Confidence            531             12489999999999999999999877643 36666654

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.34  E-value=1.2e-11  Score=66.02  Aligned_cols=60  Identities=17%  Similarity=0.355  Sum_probs=45.5

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEE--Ee---CCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLME--TR---GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL   62 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~--~~---~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v   62 (115)
                      .|.|+|+|+|.++..  ..+....  ..   .....|.|.++..+|+|.|+|.+.|..|.....+.|
T Consensus        30 ~P~i~W~k~g~~l~~--~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l   94 (103)
T 1wwb_X           30 KPALQWFYNGAILNE--SKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA   94 (103)
T ss_dssp             CCEEEEEETTEEECC--CSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             CCEEEEEECCEECCC--CCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEE
Confidence            479999999999987  5543221  11   123559999999999999999999999988774443

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.34  E-value=4.8e-12  Score=85.00  Aligned_cols=100  Identities=19%  Similarity=0.214  Sum_probs=68.7

Q ss_pred             cceEEEECCEEeCCC----------CCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcce-eE--EEEE------
Q psy3272           2 GMMSWYQDTFLIEPS----------VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA-KK--YMEL------   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~--~~~v------   62 (115)
                      |.|+|+|++..+...          ...+..+   .....|.|.+++.+|+|.|+|.+.+..+.. ..  .|.|      
T Consensus       397 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~---~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~  473 (581)
T 3o3u_N          397 QRLEWKLNTGRTEAWKVLSPQGGGPWDSVARV---LPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGK  473 (581)
T ss_dssp             CEEEEEEEETTSSSCEECCSCCSSGGGGTSEE---CTTSCEEESSCCGGGCEEEEEEEECTTSCEEEEEEEEEEEBCCCC
T ss_pred             ceEEEEEcCCeeEEEEecccCCCCCcCCcEEE---cCCceEEEeccccccCeEEEEEEEcCCCceeEEEEEEEEEcCCCC
Confidence            689999986532110          0112221   233479999999999999999999877665 22  4444      


Q ss_pred             -----------------------ec-ccCCcEEEEEeCC--------------------------eEEEEEeccCCCC-C
Q psy3272          63 -----------------------SV-SVSDRRLMETRGN--------------------------KHTLTIKNVQSTD-F   91 (115)
Q Consensus        63 -----------------------~g-~~~~~~~~~~~~~--------------------------~~~l~i~~~~~~d-~   91 (115)
                                             .| .|.|.+.|.+++.                          .+.|.|..+.++| .
T Consensus       474 p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~  553 (581)
T 3o3u_N          474 PEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPR  553 (581)
T ss_dssp             CEEESCCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECTTTCCEEEEEEEEECCCTTSCSC
T ss_pred             CEEEcCCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcCCCceEEEEEEEEEEeccccCCC
Confidence                                   33 5888999987541                          1258888888565 6


Q ss_pred             eeeEEEeecCccc
Q psy3272          92 GNYSCVADNNLGR  104 (115)
Q Consensus        92 G~y~C~~~n~~~~  104 (115)
                      |.|+|.++|....
T Consensus       554 ~~y~C~~~n~~~~  566 (581)
T 3o3u_N          554 PTFSCSFSPGLPR  566 (581)
T ss_dssp             CCEEEEEECSSCS
T ss_pred             ceEEEEEeccCCC
Confidence            7999999999754

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.32  E-value=1.4e-11  Score=74.11  Aligned_cols=92  Identities=11%  Similarity=0.162  Sum_probs=60.8

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCCc------c-----eeEEEEE-----------------------
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLG------R-----AKKYMEL-----------------------   62 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~------~-----~~~~~~v-----------------------   62 (115)
                      .|+.+...  .....|.|.+++.+|+|.|.|.+.+..+      .     ....|.|                       
T Consensus        67 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~  146 (228)
T 3bae_H           67 SRLTISKDTSRDMVFMKITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGS  146 (228)
T ss_dssp             GGEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCS
T ss_pred             CcEEEEEcCCCCeEEEEEcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCC
Confidence            45554332  2357899999999999999999986532      0     0012222                       


Q ss_pred             --------ecc-cCC-cEEEEEeCC------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEE
Q psy3272          63 --------SVS-VSD-RRLMETRGN------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL  111 (115)
Q Consensus        63 --------~g~-~~~-~~~~~~~~~------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l  111 (115)
                              .|. |.| .+.|..++.                  ...|.|......| |.|+|.+.|..+.......+
T Consensus       147 ~~~l~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~~  222 (228)
T 3bae_H          147 SVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKKI  222 (228)
T ss_dssp             EEEEEEEEEEEBSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             CEEEEEEEccEeCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEEc
Confidence                    233 666 777765442                  1247777777755 99999999999886655544

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.32  E-value=2.6e-12  Score=80.75  Aligned_cols=101  Identities=13%  Similarity=0.129  Sum_probs=67.6

Q ss_pred             cceEEEECCEEeCCCCCCCE-EEEEeCC----eEEEEEecCCCCCCeEEEEEeecCCcceeEEE-------------EE-
Q psy3272           2 GMMSWYQDTFLIEPSVSDRR-LMETRGN----KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM-------------EL-   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~-~~~~~~~----~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~-------------~v-   62 (115)
                      |.|+|+|+|.++..  .... .......    ...|.|.....+|.|.|.|.+.+..+.....+             .+ 
T Consensus        41 ~~v~W~k~g~~l~~--~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~~~~~~~~p~v~~~  118 (323)
T 2wqr_A           41 IQITWLEDGQVMDV--DLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLS  118 (323)
T ss_dssp             EEEEEEETTEECCG--GGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEECCCCCSSGGGCEEEEC
T ss_pred             eEEEEEECCEEccc--ceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeeecCCCCCCCCCEEEEc
Confidence            47999999998864  2211 1111111    24577877777899999999998654433221             11 


Q ss_pred             -------------------ecc-cCC---cEEEEEeCC--------------------eEEEEEeccCCCCCeeeEEEee
Q psy3272          63 -------------------SVS-VSD---RRLMETRGN--------------------KHTLTIKNVQSTDFGNYSCVAD   99 (115)
Q Consensus        63 -------------------~g~-~~~---~~~~~~~~~--------------------~~~l~i~~~~~~d~G~y~C~~~   99 (115)
                                         .|. |.+   .+.|++++.                    ...|.|.++..+|.|.|+|.+.
T Consensus       119 ~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~  198 (323)
T 2wqr_A          119 RPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVT  198 (323)
T ss_dssp             CCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEE
T ss_pred             CCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEE
Confidence                               343 445   788877431                    1258999999999999999999


Q ss_pred             cCccc
Q psy3272         100 NNLGR  104 (115)
Q Consensus       100 n~~~~  104 (115)
                      |..+.
T Consensus       199 n~~~~  203 (323)
T 2wqr_A          199 HPHLP  203 (323)
T ss_dssp             CTTSS
T ss_pred             CCCCC
Confidence            98744

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.32  E-value=2.7e-11  Score=64.46  Aligned_cols=63  Identities=21%  Similarity=0.439  Sum_probs=48.8

Q ss_pred             cceEEEECCEEeCCCCCC--CEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEEecccCC
Q psy3272           2 GMMSWYQDTFLIEPSVSD--RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSD   68 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~   68 (115)
                      |.|.|+|++..+..  ..  ++.+........|.|.++..+|+|.|.|.+.+  ......|.|.+.|.+
T Consensus        36 ~~v~W~k~g~~l~~--~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n--~~~~~~l~V~~~p~p  100 (103)
T 1x44_A           36 ANVKWFKNGEEIIP--GPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG--GQSSAKLSVDLKSGP  100 (103)
T ss_dssp             CCCEEEETTEECCC--STTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT--EEEEEEEEEECCCSC
T ss_pred             CeEEEEECCEECCC--CCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC--CcEEEEEEEeCCCCC
Confidence            68999999999877  55  66776666778999999999999999999987  233336666555443

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.32  E-value=3.9e-11  Score=72.63  Aligned_cols=86  Identities=15%  Similarity=0.141  Sum_probs=56.8

Q ss_pred             CCEEEEE-eCCeEEEEEecCCCCCCeEEEEEeecCCcc------eeEEEEE-----------------------------
Q psy3272          19 DRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNNLGR------AKKYMEL-----------------------------   62 (115)
Q Consensus        19 ~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~------~~~~~~v-----------------------------   62 (115)
                      .++.+.. ......|.|.+++.+|+|.|.|.+.+..+.      ....+.|                             
T Consensus        65 ~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~  144 (246)
T 4dzb_B           65 DKFLINHASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKAT  144 (246)
T ss_dssp             GGEEEEEEETTEEEEEECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEE
T ss_pred             CcEEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEE
Confidence            4555432 345678999999999999999999754210      0001111                             


Q ss_pred             -----ecccCC--cEEEEEeCCe--------------------------EEEEEeccCCCC-CeeeEEEeecCccc
Q psy3272          63 -----SVSVSD--RRLMETRGNK--------------------------HTLTIKNVQSTD-FGNYSCVADNNLGR  104 (115)
Q Consensus        63 -----~g~~~~--~~~~~~~~~~--------------------------~~l~i~~~~~~d-~G~y~C~~~n~~~~  104 (115)
                           .|.+++  .+.|.+++..                          ..|.|.....+| .|.|+|.+.|....
T Consensus       145 L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~  220 (246)
T 4dzb_B          145 LVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  220 (246)
T ss_dssp             EEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             EEEEEccCcCCceEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCC
Confidence                 344444  6788765411                          137777777778 89999999998755

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.31  E-value=1.6e-12  Score=78.12  Aligned_cols=77  Identities=22%  Similarity=0.375  Sum_probs=45.9

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCCccee----E----------EEEE-------------------ecc-cCC-cEEE
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAK----K----------YMEL-------------------SVS-VSD-RRLM   72 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~----~----------~~~v-------------------~g~-~~~-~~~~   72 (115)
                      ....|.|.+++.+|+|.|.|.+.+..+...    .          .+.+                   .|. |.+ .+.|
T Consensus        91 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W  170 (233)
T 3bqu_C           91 TDFVFTIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKW  170 (233)
T ss_dssp             EEEEEC-----CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEE
T ss_pred             CEEEEEECCCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEE
Confidence            345899999999999999999976542110    0          1111                   343 333 6888


Q ss_pred             EEeCCe----------------------EEEEEeccCCCCCeeeEEEeecCccc
Q psy3272          73 ETRGNK----------------------HTLTIKNVQSTDFGNYSCVADNNLGR  104 (115)
Q Consensus        73 ~~~~~~----------------------~~l~i~~~~~~d~G~y~C~~~n~~~~  104 (115)
                      .+++..                      ..|.|.....+|.|.|+|.|.|....
T Consensus       171 ~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          171 KIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             EEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             EECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            775421                      24778888888999999999998655

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.31  E-value=3e-10  Score=68.04  Aligned_cols=91  Identities=10%  Similarity=0.115  Sum_probs=61.4

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCCc----c----eeEEEEE--------------------------
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLG----R----AKKYMEL--------------------------   62 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~----~----~~~~~~v--------------------------   62 (115)
                      .|+.+...  .....|.|.+++.+|+|.|.|.+.+..+    .    ....|.|                          
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~  145 (223)
T 1dee_B           66 GRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVA  145 (223)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEE
T ss_pred             CeEEEEecCCCCEEEEEECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEE
Confidence            46655432  2357899999999999999999987531    0    0012222                          


Q ss_pred             -----ecc-cCC-cEEEEE-eCC-------------------eEEEEEeccCC--CCCeeeEEEeecCccceeeEE
Q psy3272          63 -----SVS-VSD-RRLMET-RGN-------------------KHTLTIKNVQS--TDFGNYSCVADNNLGRAKKYM  109 (115)
Q Consensus        63 -----~g~-~~~-~~~~~~-~~~-------------------~~~l~i~~~~~--~d~G~y~C~~~n~~~~~~~~~  109 (115)
                           .|. |.| .+.|.. ++.                   ...|.|.....  .|.|.|+|.+.|..+.....+
T Consensus       146 L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~  221 (223)
T 1dee_B          146 VGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV  221 (223)
T ss_dssp             EEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred             EEEEEEEEeCCCeEEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence                 233 666 788888 432                   12467766665  778999999999998866554

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.30  E-value=3e-11  Score=64.20  Aligned_cols=53  Identities=21%  Similarity=0.224  Sum_probs=44.0

Q ss_pred             ecccCCcEEEEEeC-----------------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEeC
Q psy3272          63 SVSVSDRRLMETRG-----------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE  115 (115)
Q Consensus        63 ~g~~~~~~~~~~~~-----------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~~  115 (115)
                      .|.|.|.+.|.+++                 ....|.|.++..+|+|.|+|.|.|..|..+..+.|.|.+
T Consensus        30 ~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           30 TGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS   99 (100)
T ss_dssp             EEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEECCCEEEEEEEEEEEE
Confidence            56677777776643                 345799999999999999999999999999999998863

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.30  E-value=4.6e-11  Score=62.90  Aligned_cols=56  Identities=27%  Similarity=0.306  Sum_probs=45.9

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEE-EeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLME-TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|.|+|++..+..  ..++... .......|.|.++..+|+|.|.|.+.|..+....
T Consensus        34 ~p~v~W~k~g~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~   90 (99)
T 1g1c_A           34 DPECEWYKNGVKIER--SDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSS   90 (99)
T ss_dssp             CCEEEEEETTEECCC--CSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCEEEEEECCEECCC--CCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCCcEEE
Confidence            378999999999886  5555432 3456778999999999999999999999887766

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.29  E-value=4.1e-11  Score=64.44  Aligned_cols=53  Identities=28%  Similarity=0.327  Sum_probs=45.0

Q ss_pred             ecccCCcEEEEEeC---------------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEeC
Q psy3272          63 SVSVSDRRLMETRG---------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE  115 (115)
Q Consensus        63 ~g~~~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~~  115 (115)
                      .|.|.|.+.|.+++               ....|.|.++..+|+|.|+|.|.|..|..+..+.|.|.+
T Consensus        38 ~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~  105 (107)
T 3knb_B           38 LGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLE  105 (107)
T ss_dssp             EEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEEEEEc
Confidence            67778888887654               344799999999999999999999999998888888863

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.29  E-value=4.8e-11  Score=77.86  Aligned_cols=88  Identities=11%  Similarity=0.119  Sum_probs=60.3

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCCcce-----eEEEEE-----------------------------
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLGRA-----KKYMEL-----------------------------   62 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-----~~~~~v-----------------------------   62 (115)
                      .|+.+...  .....|.|.+++.+|+|.|.|.+.+..+..     ...+.|                             
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C  145 (444)
T 1igt_B           66 GRFTISRDNAKNTLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGC  145 (444)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEE
T ss_pred             CceEEEEeCCCCeEEEEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEE
Confidence            45554432  346789999999999999999998754220     012222                             


Q ss_pred             --ec-ccCC-cEEEEEeCCe------------------EEEEEeccCCCCCeeeEEEeecCccceee
Q psy3272          63 --SV-SVSD-RRLMETRGNK------------------HTLTIKNVQSTDFGNYSCVADNNLGRAKK  107 (115)
Q Consensus        63 --~g-~~~~-~~~~~~~~~~------------------~~l~i~~~~~~d~G~y~C~~~n~~~~~~~  107 (115)
                        .| .|.| .+.|.+++..                  ..|.|..+..+| |.|+|.|.|..+....
T Consensus       146 ~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~  211 (444)
T 1igt_B          146 LVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKV  211 (444)
T ss_dssp             EEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEE
T ss_pred             EEcceeCCCcEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcce
Confidence              33 3555 7777654321                  257888888889 9999999999987543

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.29  E-value=3e-11  Score=65.76  Aligned_cols=60  Identities=20%  Similarity=0.273  Sum_probs=47.3

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeC----CeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRG----NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL   62 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v   62 (115)
                      .|.|+|+|+|..+..  ..+.......    ....|.|.++..+|+|.|.|.+.|..|.....+.+
T Consensus        34 ~p~i~W~k~g~~l~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l   97 (118)
T 1wwc_A           34 PPTLHWLHNGQPLRE--SKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING   97 (118)
T ss_dssp             CCEEEEEETTEECCC--SSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCeEEEEECCEECCC--CCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEE
Confidence            378999999999887  5554433221    35689999999999999999999999888775554

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.29  E-value=3.5e-11  Score=72.20  Aligned_cols=90  Identities=11%  Similarity=0.111  Sum_probs=60.2

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCCc-----c--e---eEEEEE-----------------------
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLG-----R--A---KKYMEL-----------------------   62 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~-----~--~---~~~~~v-----------------------   62 (115)
                      ..|+.+...  .....|+|.+++.+|+|.|.|.+.+..+     .  .   ...|.|                       
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~  144 (225)
T 1op3_H           65 KGRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGG  144 (225)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCC
T ss_pred             CCceEEEecCCCCEEEEEECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCC
Confidence            356655432  3467899999999999999999987642     1  0   112222                       


Q ss_pred             --------ecc-cCC-cEEEEEeCCe-------------------EEEEEeccCCCCCeeeEEEeecCccceeeE
Q psy3272          63 --------SVS-VSD-RRLMETRGNK-------------------HTLTIKNVQSTDFGNYSCVADNNLGRAKKY  108 (115)
Q Consensus        63 --------~g~-~~~-~~~~~~~~~~-------------------~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~  108 (115)
                              .|. |.| .+.|..++..                   ..|.|......| |.|+|.|.|..+.....
T Consensus       145 ~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  218 (225)
T 1op3_H          145 TAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD  218 (225)
T ss_dssp             EEEEEEEEEEEBSSCCEEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEEEE
T ss_pred             cEEEEEEEEeEECCCeEEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCccEE
Confidence                    233 555 6777554321                   247888888788 99999999987765443

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.28  E-value=2.2e-10  Score=68.55  Aligned_cols=88  Identities=17%  Similarity=0.240  Sum_probs=60.1

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCCcce-----eEEEEE-----------------------------
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLGRA-----KKYMEL-----------------------------   62 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-----~~~~~v-----------------------------   62 (115)
                      .|+.+...  .....|+|.+++.+|+|.|.|.+.+..+..     ...|.|                             
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v~L~C~  145 (220)
T 2fbj_H           66 DKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPVIIGCL  145 (220)
T ss_dssp             TTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSEEEEEE
T ss_pred             CcEEEEeeCCCCEEEEEECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeecccccCCCcEEEEEE
Confidence            56655432  345789999999999999999998753210     012222                             


Q ss_pred             -ecc-cC--CcEEEEEeCCe-------------------EEEEEeccCCCCCeeeEEEeecCcccee
Q psy3272          63 -SVS-VS--DRRLMETRGNK-------------------HTLTIKNVQSTDFGNYSCVADNNLGRAK  106 (115)
Q Consensus        63 -~g~-~~--~~~~~~~~~~~-------------------~~l~i~~~~~~d~G~y~C~~~n~~~~~~  106 (115)
                       .|. |.  +.+.|..++..                   ..|.|......|.|.|+|.+.|..+...
T Consensus       146 ~~g~~P~~~~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          146 IHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             EEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             EEeEECCCcEEEEEecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence             233 54  56777654421                   1478888888899999999999998754

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.27  E-value=1.1e-11  Score=77.88  Aligned_cols=100  Identities=12%  Similarity=0.098  Sum_probs=65.1

Q ss_pred             ceEEEECC-EEeCCCCCCCEEEEEe----CCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EE------------EE-
Q psy3272           3 MMSWYQDT-FLIEPSVSDRRLMETR----GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YM------------EL-   62 (115)
Q Consensus         3 ~v~W~~~~-~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~------------~v-   62 (115)
                      .|.|+|++ ..+..  .........    .....|.|.++..+|.|.|.|.+.+.......  .+            .+ 
T Consensus       148 ~i~W~k~~g~~~~~--~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~  225 (323)
T 2wqr_A          148 QLTWSRASGKPVNH--STRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAF  225 (323)
T ss_dssp             EEEEEETTCCCCCC--CCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEE
T ss_pred             EEEEEECCCccccc--ccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEe
Confidence            89999975 44332  221111000    02457999999999999999999876532211  11            11 


Q ss_pred             ------------------ec-ccCC-cEEEEEeCC----------------------eEEEEEeccCCCCCeeeEEEeec
Q psy3272          63 ------------------SV-SVSD-RRLMETRGN----------------------KHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        63 ------------------~g-~~~~-~~~~~~~~~----------------------~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                                        .| .|.+ .+.|.+++.                      ...|.|..+..+|.|.|+|.|.|
T Consensus       226 ~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n  305 (323)
T 2wqr_A          226 ATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVH  305 (323)
T ss_dssp             ECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEEC
T ss_pred             CCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEe
Confidence                              34 3333 688877542                      12588888888999999999999


Q ss_pred             Cccc
Q psy3272         101 NLGR  104 (115)
Q Consensus       101 ~~~~  104 (115)
                      ....
T Consensus       306 ~~~~  309 (323)
T 2wqr_A          306 EAAS  309 (323)
T ss_dssp             TTST
T ss_pred             CCCC
Confidence            9876

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=7.3e-11  Score=64.22  Aligned_cols=55  Identities=11%  Similarity=0.184  Sum_probs=44.6

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+|++..+..   .++..........|.|.++..+|+|.|.|.+.|..+....
T Consensus        53 ~p~i~W~k~g~~l~~---~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~  107 (118)
T 2e7c_A           53 RPQVVWTKGGAPLDT---SRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTA  107 (118)
T ss_dssp             CCEEEEEETTEECCC---SSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSCEECC
T ss_pred             CCEEEEEECCEECCC---CcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCCeEEE
Confidence            378999999998863   3444445556778999999999999999999998887665

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.26  E-value=1.9e-10  Score=70.68  Aligned_cols=51  Identities=31%  Similarity=0.509  Sum_probs=36.0

Q ss_pred             cceEEEEC--CEE---eC-------CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           2 GMMSWYQD--TFL---IE-------PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         2 p~v~W~~~--~~~---~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      |.|.|||.  +..   +.       .....++..........|+|.+++.+|+|.|.|.+.+.
T Consensus        41 ~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  103 (264)
T 2gjj_A           41 NYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAEDLAVYYCQQYSN  103 (264)
T ss_dssp             ECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             ceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            57999985  221   11       00135666554556779999999999999999999764

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=5.5e-11  Score=63.15  Aligned_cols=62  Identities=19%  Similarity=0.376  Sum_probs=48.7

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEEecccC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVS   67 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~   67 (115)
                      |.|.|+|++..+..  ..++.+........|.|.++..+|+|.|.|.+.+  ......|.|...|.
T Consensus        37 ~~v~W~k~g~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n--~~~~~~l~V~~~p~   98 (103)
T 2edf_A           37 TPVHWLKDRKAIRK--SQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA--SKSTASLHVEEKAS   98 (103)
T ss_dssp             CCCCEEESSCBCCC--SSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS--CEEEEEEEECCCSS
T ss_pred             CcEEEEECCEEccC--CCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc--CCcEEEEEEeCCCC
Confidence            67999999998877  6777776666778999999999999999999988  23333666655443

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.24  E-value=3.8e-10  Score=68.08  Aligned_cols=96  Identities=13%  Similarity=0.184  Sum_probs=62.5

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEee--cCCc----c--eeEEEEE-------------------------
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD--NNLG----R--AKKYMEL-------------------------   62 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~--~~~~----~--~~~~~~v-------------------------   62 (115)
                      ..|+.+...  .....|+|.+++.+|+|.|.|.+.  +..+    .  ....|.|                         
T Consensus        64 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~  143 (232)
T 1dn0_B           64 KSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSS  143 (232)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCS
T ss_pred             CCeEEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCc
Confidence            356655432  345689999999999999999997  3200    0  0012222                         


Q ss_pred             -------ec-ccCC-cEEEEE-eCCe-------------------EEEEEeccCC--CCCeeeEEEeecCccceeeEEEE
Q psy3272          63 -------SV-SVSD-RRLMET-RGNK-------------------HTLTIKNVQS--TDFGNYSCVADNNLGRAKKYMEL  111 (115)
Q Consensus        63 -------~g-~~~~-~~~~~~-~~~~-------------------~~l~i~~~~~--~d~G~y~C~~~n~~~~~~~~~~l  111 (115)
                             .| .|.+ .+.|.. ++..                   ..|.|.....  .|.|.|+|.+.|..+.......+
T Consensus       144 v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i  223 (232)
T 1dn0_B          144 VAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPL  223 (232)
T ss_dssp             EEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEEC
T ss_pred             EEEEEEEEEEeCCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEec
Confidence                   22 3665 788887 4421                   2467777665  78999999999999987666555


Q ss_pred             EE
Q psy3272         112 SE  113 (115)
Q Consensus       112 ~v  113 (115)
                      .|
T Consensus       224 ~~  225 (232)
T 1dn0_B          224 PV  225 (232)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.24  E-value=1.3e-10  Score=71.35  Aligned_cols=51  Identities=27%  Similarity=0.498  Sum_probs=36.2

Q ss_pred             cceEEEECC--EE---eC-------CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           2 GMMSWYQDT--FL---IE-------PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         2 p~v~W~~~~--~~---~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      +.|.|||..  ..   +.       .....++..........|+|.+++.+|+|.|.|.+.+.
T Consensus        50 ~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  112 (268)
T 1x9q_A           50 TYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAEDLGVYFCSQSTH  112 (268)
T ss_dssp             BCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             ceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChhHCEEEEEEEecC
Confidence            689999853  21   11       00135666554556778999999999999999999865

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.24  E-value=1.2e-11  Score=66.36  Aligned_cols=55  Identities=31%  Similarity=0.519  Sum_probs=47.1

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      |.|.|+|++..+..  ..++.+........|.|.++..+|+|.|.|.+.|..+....
T Consensus        44 p~v~W~k~g~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   98 (106)
T 1nct_A           44 PTVTWLRKGQVLST--SARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEA   98 (106)
T ss_dssp             CBCCBCSSSSCCTT--CSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCSSCBCCE
T ss_pred             CEEEEEECCEECCC--CCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeCCCeEEE
Confidence            68999999988876  67777666566789999999999999999999998877665

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.23  E-value=2.6e-10  Score=69.62  Aligned_cols=93  Identities=12%  Similarity=0.106  Sum_probs=62.3

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCC----ccee--EEEEE----------------------------
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNL----GRAK--KYMEL----------------------------   62 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~----~~~~--~~~~v----------------------------   62 (115)
                      .|+.+...  .....|+|.+++.+|+|.|.|.+.+..    ....  ..+.|                            
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~  145 (253)
T 3liz_H           66 GRFTISRDNAKNTLFLQMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLG  145 (253)
T ss_dssp             TTCEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEE
T ss_pred             CcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEE
Confidence            45554432  346779999999999999999997641    1100  02222                            


Q ss_pred             ---ec-ccCC-cEEEEEeCC------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEE
Q psy3272          63 ---SV-SVSD-RRLMETRGN------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS  112 (115)
Q Consensus        63 ---~g-~~~~-~~~~~~~~~------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~  112 (115)
                         .| .|.+ .+.|..++.                  ...|.|......| |.|+|.+.|..+.......|.
T Consensus       146 C~~~g~~P~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~  217 (253)
T 3liz_H          146 CLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV  217 (253)
T ss_dssp             EEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred             EEEeeEeCCCeEEEEEeCCeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEec
Confidence               33 5555 677765442                  1368888888889 999999999998766655543

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.23  E-value=7e-11  Score=62.30  Aligned_cols=56  Identities=29%  Similarity=0.506  Sum_probs=43.5

Q ss_pred             CcceEEEECCEEeCCCCCCCEE-EEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRL-METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|.|+|++..+..  ..+.. .........|.|.++..+|+|.|.|.+.|..+....
T Consensus        34 ~p~v~W~~~g~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~   90 (100)
T 2kdg_A           34 APDVSWYLNGRTVQS--DDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATF   90 (100)
T ss_dssp             CCEEEEEETTEEECC--CSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCEEEEEECCEECcC--CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEE
Confidence            368999999998876  43322 222334568999999999999999999998887766

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.23  E-value=2.7e-10  Score=69.81  Aligned_cols=33  Identities=27%  Similarity=0.430  Sum_probs=25.6

Q ss_pred             CCEEEEE-eCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          19 DRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        19 ~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      .++.+.. ......|.|.+++.+|+|.|.|.+.+
T Consensus        88 ~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~  121 (268)
T 3pl6_D           88 DRFFAVRPEGSVSTLKIQRTERGDSAVYLCATSA  121 (268)
T ss_dssp             TTEEEECTTSSSEEEEECSCCGGGCEEEEEEEES
T ss_pred             CcEEEEecCCCEEEEEECCCCcccCEEEEEEEec
Confidence            5555432 22367899999999999999999986

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.23  E-value=2e-10  Score=70.62  Aligned_cols=90  Identities=9%  Similarity=0.069  Sum_probs=59.0

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCCc-c----eeEEEEE-----------------------------
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLG-R----AKKYMEL-----------------------------   62 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~-~----~~~~~~v-----------------------------   62 (115)
                      .|+.+...  .....|+|.+++.+|+|.|.|.+.+..+ .    ....|.|                             
T Consensus        72 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C  151 (261)
T 2xqy_G           72 DKVTLTVDKSSSTVYIQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGC  151 (261)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEE
T ss_pred             CcEEEEecCCCCEEEEEEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEE
Confidence            45554432  3467899999999999999999987431 0    0012222                             


Q ss_pred             --ec-ccCC-cEEEEEeCC------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEE
Q psy3272          63 --SV-SVSD-RRLMETRGN------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM  109 (115)
Q Consensus        63 --~g-~~~~-~~~~~~~~~------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~  109 (115)
                        .| .|.+ .+.|..++.                  ...|.|......| |.|+|.+.|.........
T Consensus       152 ~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~~~~  219 (261)
T 2xqy_G          152 LVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDK  219 (261)
T ss_dssp             EEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             EEEeEeCCCCEEEEecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCccEEE
Confidence              23 3555 677755432                  1357888888777 999999999876654443

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.22  E-value=4.2e-11  Score=73.90  Aligned_cols=106  Identities=12%  Similarity=0.131  Sum_probs=61.4

Q ss_pred             eEEEECCEEeCCCCCCCEEEEE-eCCeEEEEEecCCCCCCeEEEEEeecCCcc---eeEEEEE-----------------
Q psy3272           4 MSWYQDTFLIEPSVSDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNNLGR---AKKYMEL-----------------   62 (115)
Q Consensus         4 v~W~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~---~~~~~~v-----------------   62 (115)
                      |+|++++..+..    +..... ......|.|.++..+|+|.|.|.+.+..+.   ....+.|                 
T Consensus        28 v~W~~~~~~~~~----~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~  103 (289)
T 3mjg_X           28 VVWERMSQEPPQ----EMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEEL  103 (289)
T ss_dssp             CEEEBTTBCCSE----EEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHH
T ss_pred             EEEECCCCCccc----ceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcc
Confidence            899999886632    111000 011478999999999999999999886644   2223332                 


Q ss_pred             -----ec----------ccCCcEEEEEeCCeEEEE------EeccCCCCCeeeEEEeecCcccee-eEEEEEE
Q psy3272          63 -----SV----------SVSDRRLMETRGNKHTLT------IKNVQSTDFGNYSCVADNNLGRAK-KYMELSE  113 (115)
Q Consensus        63 -----~g----------~~~~~~~~~~~~~~~~l~------i~~~~~~d~G~y~C~~~n~~~~~~-~~~~l~v  113 (115)
                           .|          .|.+.+.|.+......+.      .......|.|.|+|.|.|..+... ..+.|.|
T Consensus       104 ~~~v~~G~~v~l~C~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~v  176 (289)
T 3mjg_X          104 FIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYR  176 (289)
T ss_dssp             EEEESSCCCEEECCCBSCTTSCEEEEESSCCSCCCCCEETTTEEEECCCSSEEEEEEEETTEEEECCCEEEEE
T ss_pred             eEEeecCCeEEEEeEcCCCCceEEEEeCCCCCccceeecCCcCeeeeccCcEEEEEEEeCCceeeeeeEEEEe
Confidence                 01          456677787754111000      001135799999999998776533 3344444

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.22  E-value=5.6e-11  Score=63.51  Aligned_cols=57  Identities=26%  Similarity=0.475  Sum_probs=45.2

Q ss_pred             eEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE
Q psy3272           4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL   62 (115)
Q Consensus         4 v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v   62 (115)
                      |.|+|++..+..  ..++.+........|.|.++..+|+|.|.|.+.|........+.|
T Consensus        39 v~W~k~g~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~l~V   95 (106)
T 2dlt_A           39 GKWYKNGVEVRP--SKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNF   95 (106)
T ss_dssp             EEEEESSCBCCC--CSSCEEEEETTEEEEEESSCCTTTCSCEEEEEETSCCCCCBCEEE
T ss_pred             eEEEcCCEECcC--CCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccCCceEEEEEEE
Confidence            999999998877  677776666667899999999999999999999873333334444

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.22  E-value=6.6e-11  Score=62.29  Aligned_cols=56  Identities=27%  Similarity=0.437  Sum_probs=43.5

Q ss_pred             CcceEEEECCEEeCCCCCCC-EEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDR-RLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|.|+|++..+..  ... +..........|.|.++..+|+|.|.|.+.|..+....
T Consensus        34 ~p~v~W~k~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~   90 (99)
T 1u2h_A           34 KPVVSWLRNRQPVRP--DQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQC   90 (99)
T ss_dssp             CCEEEEEETTEECCC--BTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCEEEEEECCEECCC--CCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCCceeE
Confidence            368999999998875  333 33333334458999999999999999999998887766

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.22  E-value=1.7e-10  Score=62.24  Aligned_cols=46  Identities=22%  Similarity=0.560  Sum_probs=40.9

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEe
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVA   49 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   49 (115)
                      |.|+|+|++..+..  ..++.+........|.|.++..+|+|.|.|.+
T Consensus        47 p~v~W~k~~~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   92 (113)
T 2edh_A           47 APVEWWKGHETLRD--GDRHSLRQDGARCELQIRGLVAEDAGEYLCMC   92 (113)
T ss_dssp             CCCEEEESSSBCCC--SSSEEEEEETTEEEEEECSCCSTTCEEEEEEE
T ss_pred             CcEEEEECCEECCC--CCcEEEEECCCEEEEEECCCChhhCEEEEEEe
Confidence            68999999998887  77887776667789999999999999999999

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.21  E-value=2.7e-11  Score=72.44  Aligned_cols=101  Identities=13%  Similarity=0.200  Sum_probs=62.9

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEE-----eCCeEEEEEecCCCCCCeEEEEEeecCCcce--eEE------------EEE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMET-----RGNKHTLTIKNVQSTDFGNYSCVADNNLGRA--KKY------------MEL   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~--~~~------------~~v   62 (115)
                      |.|+|+|++..+..  ........     ......|.|.+++.+|.|.|.|.+.+..+..  ...            +.+
T Consensus        45 ~~v~W~k~~~~~~~--~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~  122 (218)
T 2rgs_A           45 VQISWFVNNVEVHT--AQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYI  122 (218)
T ss_dssp             EEEEEEETTEEECC--CEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEE
T ss_pred             eEEEEEECCccccC--cccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEE
Confidence            57999999987754  21100000     0123579999999999999999998765432  111            111


Q ss_pred             -------------------ec-ccCC-cEEEEEeCCeE--------------------EEEEeccCCCCCeeeEEEeecC
Q psy3272          63 -------------------SV-SVSD-RRLMETRGNKH--------------------TLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        63 -------------------~g-~~~~-~~~~~~~~~~~--------------------~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                                         .| .|.+ .+.|.+++...                    .|.|......|.|.|+|.|.|.
T Consensus       123 ~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~  202 (218)
T 2rgs_A          123 LPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHE  202 (218)
T ss_dssp             ECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECT
T ss_pred             ECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcC
Confidence                               44 4555 78888765210                    1333333334589999999998


Q ss_pred             ccc
Q psy3272         102 LGR  104 (115)
Q Consensus       102 ~~~  104 (115)
                      ...
T Consensus       203 ~l~  205 (218)
T 2rgs_A          203 GLK  205 (218)
T ss_dssp             TSG
T ss_pred             CCC
Confidence            765

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=1.7e-10  Score=61.32  Aligned_cols=59  Identities=20%  Similarity=0.397  Sum_probs=46.6

Q ss_pred             eEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEEeccc
Q psy3272           4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV   66 (115)
Q Consensus         4 v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v~g~~   66 (115)
                      |.|+|++..+..  ..++.+........|.|.++..+|+|.|.|.+.+..+  ...+.|...|
T Consensus        41 v~W~k~g~~~~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~--~~~l~V~~~P   99 (104)
T 2e6p_A           41 ATWYKDGQKVEE--SELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSA--FFGVTVQDPS   99 (104)
T ss_dssp             CEEEETTEECCC--BTTBEEEEETTEEEEEESSCCTTTCEEEEEECSSCCC--CEEEEEECCC
T ss_pred             cEEeeCCEECCC--CCCEEEEeCCCEEEEEECCCChhhCEEEEEEECCceE--EEEEEEcCCC
Confidence            899999999887  6677666666778999999999999999999988643  3345554433

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.21  E-value=4.6e-11  Score=62.36  Aligned_cols=55  Identities=18%  Similarity=0.370  Sum_probs=43.8

Q ss_pred             CcceEEEECC--EEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272           1 MGMMSWYQDT--FLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY   59 (115)
Q Consensus         1 ~p~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   59 (115)
                      .|.|+|+|++  ..+..  ..  ..........|.|.++..+|+|.|.|.+.|..+.....
T Consensus        31 ~p~i~W~k~~~~~~~~~--~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~   87 (93)
T 1wit_A           31 DPTATWTVGDSGAALAP--EL--LVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAI   87 (93)
T ss_dssp             SCEEEEECSTTTCBCST--TS--EEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCEEEEEECCCCcccCC--cE--EEEecCCEEEEEECCCChhcCEEEEEEEEcCCCeEEEE
Confidence            3789999999  77765  32  22344567889999999999999999999999877663

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=2.2e-11  Score=64.58  Aligned_cols=48  Identities=21%  Similarity=0.491  Sum_probs=40.4

Q ss_pred             cceEEEECCEEeCCCCCC----CEEEEEeCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272           2 GMMSWYQDTFLIEPSVSD----RRLMETRGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      |.|.|+|++..+..  ..    ++.+........|.|.++..+|+|.|.|.+.+
T Consensus        37 ~~v~W~k~g~~i~~--~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n   88 (101)
T 2edk_A           37 AQVMWMKNGVELTR--EDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNG   88 (101)
T ss_dssp             CCCEEEESSCBCCC--SCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEECSS
T ss_pred             CEEEEEECCEECCC--CCCcceeEEEEECCCEEEEEECCCChhhCEEEEEEEcC
Confidence            68999999998876  44    55666666678899999999999999999987

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.20  E-value=1.3e-10  Score=60.87  Aligned_cols=47  Identities=30%  Similarity=0.519  Sum_probs=40.9

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      |.|.|+|++..+..  ..++.+........|.|.++..+|+|.|.|.+.
T Consensus        37 ~~v~W~k~~~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ag   83 (95)
T 2k1m_A           37 VKVRWQRGGSDISA--SNKYGLATEGTRHTLTVREVGPADQGSYAVIAG   83 (95)
T ss_dssp             CCCEEECSSSEECS--STTCEEEEETTEEEEEESSCCTTCCSEEEEEET
T ss_pred             CeEEEEECCEECCC--CCcEEEEEcCCEEEEEEcCCCcccCEEEEEEEC
Confidence            68999999999887  677777666677899999999999999999993

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.20  E-value=1.7e-10  Score=61.02  Aligned_cols=47  Identities=32%  Similarity=0.490  Sum_probs=41.0

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEe
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVA   49 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   49 (115)
                      .|.|.|+|++..+..  ..++.+........|.|.++..+|+|.|.|.+
T Consensus        36 ~~~v~W~k~g~~i~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   82 (100)
T 2yuv_A           36 KLEVKWYKNGQEIRP--STKYIFEHKGCQRILFINNCQMTDDSEYYVTA   82 (100)
T ss_dssp             TSCEEEEESSCBCCC--BTTEEEEEETTEEEEEEEEECTTTCCEEEEEE
T ss_pred             CceEEEEECCEECCC--CCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE
Confidence            368999999998877  67777766667789999999999999999999

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.20  E-value=1.9e-10  Score=75.31  Aligned_cols=90  Identities=12%  Similarity=0.150  Sum_probs=60.8

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCCc------------c--eeEEEEE-------------------
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLG------------R--AKKYMEL-------------------   62 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~------------~--~~~~~~v-------------------   62 (115)
                      ..|+.+...  .....|.|.+++.+|+|.|.|.+.+..+            .  ....+.|                   
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~  144 (457)
T 1hzh_H           65 QDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKS  144 (457)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCC
T ss_pred             cCceEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccc
Confidence            345554432  3457899999999999999999987643            0  1112322                   


Q ss_pred             ------------ecc-cC-CcEEEEEeCC-------------------eEEEEEeccCCCCCeeeEEEeecCccceeeE
Q psy3272          63 ------------SVS-VS-DRRLMETRGN-------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKY  108 (115)
Q Consensus        63 ------------~g~-~~-~~~~~~~~~~-------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~  108 (115)
                                  .|. |. +.+.|.+++.                   ...|.|..+..+| |.|+|.|.|..+.....
T Consensus       145 ~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~  222 (457)
T 1hzh_H          145 TSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD  222 (457)
T ss_dssp             CTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEE
T ss_pred             cCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCccee
Confidence                        333 43 5677765441                   1258888888889 99999999988765443

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.20  E-value=1.1e-10  Score=69.23  Aligned_cols=100  Identities=13%  Similarity=0.128  Sum_probs=62.3

Q ss_pred             ceEEEECCEEeCCCCCCC-EEEEE----eCCeEEEEEecCCCCCCeEEEEEeecCCccee--EEE------------EE-
Q psy3272           3 MMSWYQDTFLIEPSVSDR-RLMET----RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK--KYM------------EL-   62 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~-~~~~~----~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~--~~~------------~v-   62 (115)
                      .|.|+|++..+..  ... .....    ......|.|.+++.+|+|.|.|.+.+..+...  ..+            .+ 
T Consensus        38 ~v~W~k~~~~~~~--~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~  115 (207)
T 2vol_A           38 QFSWFVDDVEVHT--AQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTL  115 (207)
T ss_dssp             EEEEEETTEEECC--CEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEE
T ss_pred             EEEEEECCccccc--cccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCCceEEEeccCCCCCcCCeEEEe
Confidence            7999999987653  100 00000    01235799999999999999999987655321  111            11 


Q ss_pred             ------------------ec-ccC-CcEEEEEeCCe--------------------EEEEEeccCCCCCeeeEEEeecCc
Q psy3272          63 ------------------SV-SVS-DRRLMETRGNK--------------------HTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        63 ------------------~g-~~~-~~~~~~~~~~~--------------------~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                                        .| .|. ..+.|.+++..                    ..|.|......|.|.|+|.|.|..
T Consensus       116 ~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~  195 (207)
T 2vol_A          116 PPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG  195 (207)
T ss_dssp             CCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTT
T ss_pred             CCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCC
Confidence                              34 344 37888775521                    124444445567899999999987


Q ss_pred             cc
Q psy3272         103 GR  104 (115)
Q Consensus       103 ~~  104 (115)
                      ..
T Consensus       196 l~  197 (207)
T 2vol_A          196 LH  197 (207)
T ss_dssp             SG
T ss_pred             CC
Confidence            54

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.20  E-value=3.4e-11  Score=78.57  Aligned_cols=103  Identities=13%  Similarity=0.172  Sum_probs=66.3

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEe---CCeEEEEEecCCCCCCeEEEEEeecCCccee--EEE------------EE--
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETR---GNKHTLTIKNVQSTDFGNYSCVADNNLGRAK--KYM------------EL--   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~--~~~------------~v--   62 (115)
                      |.|+|+|++..+.............   .....|.|.++..+|.|.|.|.+.+..+...  ..+            .+  
T Consensus       274 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~  353 (444)
T 1igt_B          274 VQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLP  353 (444)
T ss_dssp             CEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCCEEEEEC
T ss_pred             eEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCCCCCCCEEEEeC
Confidence            3799999998876421111111100   1246799999999999999999998765441  122            11  


Q ss_pred             -----------------ec-ccCC-cEEEEEeCCe--------------------EEEEEeccCCCCCeeeEEEeecCcc
Q psy3272          63 -----------------SV-SVSD-RRLMETRGNK--------------------HTLTIKNVQSTDFGNYSCVADNNLG  103 (115)
Q Consensus        63 -----------------~g-~~~~-~~~~~~~~~~--------------------~~l~i~~~~~~d~G~y~C~~~n~~~  103 (115)
                                       .| .|.+ .+.|.+++..                    ..|.|.....+|.|.|+|.|.|...
T Consensus       354 ~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l  433 (444)
T 1igt_B          354 PPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL  433 (444)
T ss_dssp             CCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred             CChHHccCCeEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCc
Confidence                             34 4554 7888876521                    1345555556679999999999864


Q ss_pred             c
Q psy3272         104 R  104 (115)
Q Consensus       104 ~  104 (115)
                      .
T Consensus       434 ~  434 (444)
T 1igt_B          434 H  434 (444)
T ss_dssp             G
T ss_pred             C
Confidence            4

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=1.9e-10  Score=61.98  Aligned_cols=61  Identities=21%  Similarity=0.311  Sum_probs=46.8

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEEeccc
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV   66 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v~g~~   66 (115)
                      |.|.|+|++..+..  ..++.+........|.|.++..+|+|.|.|.+.+  ......|.|...|
T Consensus        42 ~~v~W~k~g~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n--~~~~~~l~V~~~p  102 (113)
T 2cpc_A           42 AEVRWTKDGEEVVE--SPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD--ESASFTVTVTEPP  102 (113)
T ss_dssp             CCCEEEETTEECCC--BTTBEEEECSSEEEEEESSCCTTTCEEEEEESSS--CEEEEEEEEECCC
T ss_pred             CeEEEEECCEECcc--CCCEEEEECCCEEEEEECCCCcccCEEEEEEEec--CcEEEEEEEecCC
Confidence            68999999999877  6676665555568999999999999999999988  2233356665433

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.20  E-value=1.2e-10  Score=60.99  Aligned_cols=53  Identities=25%  Similarity=0.482  Sum_probs=43.4

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY   59 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   59 (115)
                      .|.|.|+|+|.++..  ..++...    ...|.|.++..+|+|.|.|.+.+..+.....
T Consensus        28 ~p~v~W~k~g~~~~~--~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~   80 (95)
T 4hwu_A           28 AAVISWTKDGVHLGP--NNRTVLI----GEYLQIKGATPRDSGLYACTAARTVDSETWI   80 (95)
T ss_dssp             TCEEEEEETTEEECC--CSSEEEE----TTEEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             CCEEEEEECCEECCC--CceEEEe----CCEEEECcCCcccCEEEEEEEccCCCcEEEE
Confidence            378999999999877  6665542    3579999999999999999999988766653

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.19  E-value=1.1e-10  Score=62.40  Aligned_cols=48  Identities=29%  Similarity=0.502  Sum_probs=40.9

Q ss_pred             cceEEEECCEEeCCCCC-CCEEEEEeCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272           2 GMMSWYQDTFLIEPSVS-DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      |.|+|+|+|..+..  . .++.+........|.|.++..+|+|.|.|.+.+
T Consensus        45 ~~v~W~k~g~~l~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~   93 (104)
T 1pd6_A           45 AEVKWLKNGQEIQM--SGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG   93 (104)
T ss_dssp             SCCEEEESSSEECC--CSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT
T ss_pred             CEEEEEECCEECCC--CCCeEEEEecCCEEEEEECCCCcccCEEEEEEECC
Confidence            68999999999887  5 677766566677999999999999999999954

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.19  E-value=9.1e-12  Score=81.10  Aligned_cols=77  Identities=10%  Similarity=0.163  Sum_probs=54.2

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCCcce--eEEEEE-------------------------------ecc-cCC-cEEEE
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNLGRA--KKYMEL-------------------------------SVS-VSD-RRLME   73 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~--~~~~~v-------------------------------~g~-~~~-~~~~~   73 (115)
                      ...|.|.+++.+|+|.|.|.+.+.....  ...+.|                               .|. |.+ .+.|.
T Consensus        77 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~  156 (434)
T 1igy_B           77 TANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWN  156 (434)
T ss_dssp             BBCEEECSBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEET
T ss_pred             EEEEEECCCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEe
Confidence            4579999999999999999997632111  011111                               343 555 77776


Q ss_pred             EeCC------------------eEEEEEeccCCCCCeeeEEEeecCcccee
Q psy3272          74 TRGN------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAK  106 (115)
Q Consensus        74 ~~~~------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~  106 (115)
                      +++.                  ...|.|..+..+| |.|+|.|.|..+...
T Consensus       157 k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~  206 (434)
T 1igy_B          157 SGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTK  206 (434)
T ss_dssp             TTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCC
T ss_pred             eCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCcc
Confidence            5442                  1358888888889 999999999998743

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.19  E-value=1.4e-10  Score=60.55  Aligned_cols=52  Identities=15%  Similarity=0.192  Sum_probs=44.0

Q ss_pred             ecccCCcEEEEEeC--C-------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 SVSVSDRRLMETRG--N-------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ~g~~~~~~~~~~~~--~-------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .|.|.|.+.|.+++  .             ...|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus        27 ~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   93 (93)
T 1wit_A           27 IGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             ECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEcCCCeEEEEEEEEEC
Confidence            67778888887766  2             2579999999999999999999999999888888773

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.18  E-value=5.6e-10  Score=67.34  Aligned_cols=32  Identities=13%  Similarity=0.285  Sum_probs=25.1

Q ss_pred             CCEEEEE-eCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          19 DRRLMET-RGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        19 ~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .++.+.. ......|.|.+++.+|+|.|.|.+.
T Consensus        63 ~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   95 (240)
T 3q5y_A           63 SRFSVQQFDDYHSEMNMSALELEDSAMYFCASS   95 (240)
T ss_dssp             TTEEEEECTTSCEEEEECSCCGGGCEEEEEEEE
T ss_pred             CeEEEEeCCCCEEEEEECcCChhHCEEEEEEEc
Confidence            4555443 2346789999999999999999996

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.18  E-value=1.9e-10  Score=62.54  Aligned_cols=66  Identities=21%  Similarity=0.322  Sum_probs=48.7

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeC-CeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEecccC
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRG-NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSVSVS   67 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g~~~   67 (115)
                      .|.|.|+|++..+... ..++.+.... ....|.|.++..+|+|.|.|.+.|..+....  .|.|...|.
T Consensus        44 ~p~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~  112 (116)
T 2kkq_A           44 PPKLFWKRNNEMVQFN-TDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPN  112 (116)
T ss_dssp             CCEEEEEETTEECCCC-BTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEECCSC
T ss_pred             CCEEEEEECCEECcCC-CCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEEeCCCC
Confidence            3689999999988741 3555544332 3448999999999999999999998887766  455554443

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=2e-10  Score=60.85  Aligned_cols=48  Identities=25%  Similarity=0.522  Sum_probs=41.4

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      |.|.|+|++..+..  ..++.+........|.|.++..+|+|.|.|.+.+
T Consensus        40 ~~v~W~k~g~~~~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~   87 (102)
T 2eo1_A           40 TEVTWYKDGKKLSS--SSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGG   87 (102)
T ss_dssp             SCCEEEETTEECCC--CSSEEEEEETTEEEEEETTCCTTTCSCEEEEETT
T ss_pred             CceEEEECCEECCC--CCCEEEEEcCCEEEEEECCCCcccCEEEEEEcCC
Confidence            68999999999877  6677766666678999999999999999999964

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.17  E-value=6e-11  Score=62.22  Aligned_cols=51  Identities=20%  Similarity=0.458  Sum_probs=42.5

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      |.|.|+|++..+..  ..++...    ...|.|.++..+|+|.|.|.+.+..+....
T Consensus        38 p~i~W~k~g~~~~~--~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~   88 (95)
T 2ckn_A           38 QSINWLRDGVQLVE--SNRTRIT----GEEVEVRDSIPADSGLYACVTSSPSGSDTT   88 (95)
T ss_dssp             CEEEEEBTTBCCCC--CSSEEEC----SSEEEESSCCGGGSEEEEEEEEETTEEEEE
T ss_pred             CceEEEECCEecCC--CCCEEEe----CCEEEECCCChHHCEEEEEEeccCCCcEEE
Confidence            68999999988876  5665442    568999999999999999999998877665

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=2.3e-11  Score=65.07  Aligned_cols=58  Identities=16%  Similarity=0.174  Sum_probs=45.4

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEEec
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV   64 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v~g   64 (115)
                      .|+|+|+|.++..  ..++.+........|.|.++..+|+|.|.|.+.+..  ....|.|..
T Consensus        40 ~v~W~k~g~~i~~--~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~--~~a~L~V~~   97 (104)
T 2eny_A           40 PAMWTVGGKTVGS--SSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLT--SKASLIVRE   97 (104)
T ss_dssp             CBCCBSSSSBCSB--CSSCEEEEETTEEEEEECSCCTTTCSCEEEEETTEE--EEECEEEEC
T ss_pred             eeEEEECCEECCC--CCCEEEEEcCCEEEEEECCCCHHHCEEEEEEECCee--EEEEEEEeC
Confidence            6999999998887  677777666777899999999999999999986532  222455544

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=2e-10  Score=60.45  Aligned_cols=53  Identities=23%  Similarity=0.472  Sum_probs=42.7

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|.|+|++..+..  ....   .......|.|.++..+|+|.|.|.+.|..+....
T Consensus        40 ~p~v~W~~~g~~~~~--~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~   92 (99)
T 2yr3_A           40 VPRITWLLNGQPIQY--ARST---CEAGVAELHIQDALPEDHGTYTCLAENALGQVSC   92 (99)
T ss_dssp             CCCCEEEESSSBCSS--CCCE---EETTEEEEEECSCCTTCCBCEEEEEECSSCEEEE
T ss_pred             CCeEEEEECCEECcc--cceE---eeCCeEEEEECCCChhhCEEEEEEEEECCCeEEE
Confidence            368999999988765  3332   2345688999999999999999999998887665

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=5.5e-10  Score=59.23  Aligned_cols=62  Identities=16%  Similarity=0.321  Sum_probs=46.7

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEEecccC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVS   67 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~   67 (115)
                      |.|+|+|++..+..  ..++.+........|.|.++..+|+|.|.|.+..  ......|.|.+.|.
T Consensus        37 ~~v~W~k~~~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~g~--~~~~~~l~V~~~p~   98 (103)
T 2dku_A           37 ATVTWRKGLLELRA--SGKHQPSQEGLTLRLTISALEKADSDTYTCDIGQ--AQSRAQLLVQGRRS   98 (103)
T ss_dssp             SCCEEEESSCBCCS--SSSEEEEEETTEEEEEEESCCTTTCSEEEEECSS--CBCCEEEEEECSCC
T ss_pred             CeEEEEeCCEECCC--CCeEEEEeCCCEEEEEECCCCcccCEEEEEEeCC--ceEEEEEEEeCccC
Confidence            68999999998877  6777776666677999999999999999998322  22233666655444

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.16  E-value=3.8e-10  Score=68.90  Aligned_cols=26  Identities=19%  Similarity=0.395  Sum_probs=22.4

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      ....|.|.+++.+|+|.|.|.+.+..
T Consensus        77 ~~~~L~I~~v~~~DsG~Y~C~~~~~~  102 (259)
T 3omz_A           77 KNLRMILRNLIENDSGVYYCATWDQN  102 (259)
T ss_dssp             CCCEEEESSCCGGGCEEEEEEEECTT
T ss_pred             CeEEEEECCCCcccCEEEEEEEeeCC
Confidence            34579999999999999999998654

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.16  E-value=3.5e-10  Score=69.46  Aligned_cols=35  Identities=17%  Similarity=0.236  Sum_probs=27.3

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+.+...  .....|.|.+++.+|+|.|.|.+.+..
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~  102 (257)
T 3bn9_D           66 GRFTISRDNSKNTLYLQMSSLRAEDTAVYYCARPYLT  102 (257)
T ss_dssp             TTEEEEEETTTTEEEEEEESCCGGGCEEEEEEEECCS
T ss_pred             CceEEEecCCCCEEEEEECCCChhhCEEEEEEEecCC
Confidence            45555432  346789999999999999999998754

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=2.2e-10  Score=61.46  Aligned_cols=64  Identities=23%  Similarity=0.351  Sum_probs=47.9

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEe-CCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEeccc
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETR-GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSVSV   66 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g~~   66 (115)
                      |.|.|+|++..+... ..++.+... .....|.|.++..+|+|.|.|.+.|..+....  .|.|...|
T Consensus        38 p~v~W~k~g~~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~~  104 (110)
T 2dm2_A           38 PKIYWFKDGKQISPK-SDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVN  104 (110)
T ss_dssp             CEEEEECSSCBCCTT-CSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTTCCEEECCCEEEECCS
T ss_pred             CEEEEEECCEECCCC-CCeEEEEECCCcEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEEECCC
Confidence            689999999887642 345554433 23458999999999999999999998887766  56664433

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.15  E-value=3e-09  Score=63.42  Aligned_cols=88  Identities=15%  Similarity=0.186  Sum_probs=58.6

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCCc----ceeEEEEE------------------------------
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLG----RAKKYMEL------------------------------   62 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~----~~~~~~~v------------------------------   62 (115)
                      .|+.+...  .....|.|.+++.+|+|.|.|.+.+...    .....+.|                              
T Consensus        68 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~g~~v~L~C~~  147 (221)
T 3m8o_H           68 GRLTISRDDSKNTAFLQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLV  147 (221)
T ss_dssp             TSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSCCCTTEEEEEEEE
T ss_pred             ccEEEEecCCCCEEEEEECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCcccccCCCEEEEEEE
Confidence            55554432  3456899999999999999999976421    00011211                              


Q ss_pred             ec-ccC-C-cEEEEEeCC--------------------eEEEEEeccCCCCCeeeEEEeecCcccee
Q psy3272          63 SV-SVS-D-RRLMETRGN--------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAK  106 (115)
Q Consensus        63 ~g-~~~-~-~~~~~~~~~--------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~  106 (115)
                      .| .|. + .+.|..++.                    ...|.|......|.|.|+|.+.+..+...
T Consensus       148 ~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~~  214 (221)
T 3m8o_H          148 QGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQ  214 (221)
T ss_dssp             EEEBSSCSEEEEESCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCCE
T ss_pred             EeeECCCCEEEEEEECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCce
Confidence            33 454 3 677765431                    12488899889999999999999886643

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=1.6e-10  Score=61.01  Aligned_cols=55  Identities=20%  Similarity=0.500  Sum_probs=43.8

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v   62 (115)
                      |.|+|+|++..+..  ..++.+.    ...|.|.++..+|+|.|.|.+.+..+.....+.|
T Consensus        32 p~i~W~k~g~~~~~--~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l   86 (99)
T 2cr3_A           32 QSINWLRDGVQLAE--SNRTRIT----GEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSV   86 (99)
T ss_dssp             CEEEEEESSSBCCC--CSSEEEC----SSEEEETTCCTTTCEEEEEEEEETTEEEEEEEEE
T ss_pred             CeEEEEECCEECCC--CCcEEEE----CCEEEEccCCHHHCEEEEEEEEeCCceEEEEEEE
Confidence            68999999988866  5555442    5689999999999999999999988777664433

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.15  E-value=7.3e-10  Score=66.97  Aligned_cols=33  Identities=27%  Similarity=0.355  Sum_probs=25.5

Q ss_pred             CCEEEEE-eCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          19 DRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        19 ~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      .++.+.. ......|.|.+++.+|+|.|.|.+.+
T Consensus        64 ~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   97 (245)
T 4ei6_B           64 DQFSVERPDGSYFTLKIQPTALEDSAVYFCASSF   97 (245)
T ss_dssp             TTEEEECCTTSCEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCEEEEeccCceEEEEECCCCHhHCEEEEEEEcc
Confidence            5555442 23456899999999999999999984

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.15  E-value=1.2e-10  Score=62.19  Aligned_cols=61  Identities=25%  Similarity=0.452  Sum_probs=42.8

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEeccc
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSVSV   66 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g~~   66 (115)
                      |.|.|+|++..+..  ..++..  ......|.|.++..+|+|.|.|.+.|..+....  .+.|.+.|
T Consensus        40 p~i~W~~~~~~~~~--~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~  102 (108)
T 3kvq_A           40 PQIMWFKDNETLVE--DSGIVL--KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ  102 (108)
T ss_dssp             CCEEEEESSSBCCC--BTTEEE--ETTTTEEEECSCCGGGCEEEEEEEC----CEEEEEEEEEEC--
T ss_pred             CeEEEEECCeEccc--CCCeEE--eCCCcEEEEeecCcccCEEEEEEEEeCCCceEEEEEEEEeCCC
Confidence            68999999988766  444433  345578999999999999999999998877766  55555543

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=7.8e-11  Score=63.18  Aligned_cols=64  Identities=28%  Similarity=0.431  Sum_probs=48.1

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEE-eCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEecccC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSVSVS   67 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g~~~   67 (115)
                      |.|.|+|++..+..  ........ ......|.|.++..+|+|.|.|.+.|..+....  .|.|.+.|.
T Consensus        39 p~v~W~~~g~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  105 (110)
T 2dm3_A           39 PDLSWQLDGKPVRP--DSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES  105 (110)
T ss_dssp             CEEECBBSSSBCCC--CSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEECSSCEEEECCEEEEECCCC
T ss_pred             CEEEEEECCEECCC--CCceEEEEecCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEEEEEEEeCCCC
Confidence            68999999988776  44433322 233568999999999999999999998887766  666655443

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.14  E-value=6.4e-10  Score=59.60  Aligned_cols=38  Identities=21%  Similarity=0.234  Sum_probs=34.9

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEeC
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE  115 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~~  115 (115)
                      ...|.|.++..+|+|.|+|.+.|..|..+..+.|.|.+
T Consensus        71 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~  108 (108)
T 3cx2_A           71 LFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE  108 (108)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             eEEEEEecCCCccCEEEEEEEecCCCceEEEEEEEEeC
Confidence            35799999999999999999999999999999998864

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.14  E-value=3.3e-10  Score=60.32  Aligned_cols=54  Identities=17%  Similarity=0.236  Sum_probs=45.1

Q ss_pred             EEecccCCcEEEEEeCC--------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          61 ELSVSVSDRRLMETRGN--------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        61 ~v~g~~~~~~~~~~~~~--------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .+.|.|.|.+.|.+++.                    ...|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus        24 ~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   97 (103)
T 1wwb_X           24 TVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM   97 (103)
T ss_dssp             EEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECCS
T ss_pred             EEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEEC
Confidence            34788888888877541                    1239999999999999999999999999999888875

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.13  E-value=5.6e-10  Score=63.47  Aligned_cols=61  Identities=25%  Similarity=0.365  Sum_probs=48.6

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEe-CCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEe
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETR-GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELS   63 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~   63 (115)
                      .|.|.|+|++..+..  ..++.+... .....|.|.++...|+|.|.|.+.|..+....  .|.|.
T Consensus        70 ~p~v~W~k~g~~~~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  133 (154)
T 1fhg_A           70 DPEVMWFKDDNPVKE--SRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE  133 (154)
T ss_dssp             CCEEEEEETTEECCC--SSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEEEECCEECCC--CCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEEEEEEEe
Confidence            368999999999877  666665433 33578999999999999999999999888766  45554

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.13  E-value=1.5e-10  Score=68.89  Aligned_cols=58  Identities=22%  Similarity=0.402  Sum_probs=45.6

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL   62 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v   62 (115)
                      .|.|+|+|++.++..  ..++.  .......|.|.++..+|+|.|+|.+.|..|.......+
T Consensus       146 ~p~i~W~k~g~~l~~--~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L  203 (207)
T 3rbs_A          146 ETHIVWYKDEREISV--DEKHD--FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL  203 (207)
T ss_dssp             TCEEEEEETTEEECC--CCCCC--CSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCEEEEEECCEECCC--CCceE--cCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEE
Confidence            378999999999976  44432  12234579999999999999999999999988875554

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.12  E-value=6.9e-10  Score=66.10  Aligned_cols=34  Identities=18%  Similarity=0.359  Sum_probs=26.1

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      .++.+...  .....|.|.+++.+|+|.|.|.+.+.
T Consensus        65 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~  100 (215)
T 1c5d_H           65 SRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDG  100 (215)
T ss_dssp             GGEEEEEETTTTEEEEEESSCCGGGCEEEEEEECCS
T ss_pred             CcEEEEeeCCCceEEEEECCCCcccCEEEEEEEecC
Confidence            45554432  23568999999999999999999875

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.11  E-value=1.1e-09  Score=57.55  Aligned_cols=63  Identities=16%  Similarity=0.039  Sum_probs=48.2

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC----------------CeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG----------------NKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~----------------~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      ..+.-...|.+             .|.|.+.+.|.+++                ....|.|.++..+|+|.|+|.|.|..
T Consensus        19 ~G~~v~l~C~~-------------~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   85 (99)
T 1g1c_A           19 QGSDAHFRVRV-------------VGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIA   85 (99)
T ss_dssp             TTSCEEEEEEE-------------EEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CCCcEEEEEEE-------------EEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECC
Confidence            34445667766             45566666665533                34479999999999999999999999


Q ss_pred             cceeeEEEEEEe
Q psy3272         103 GRAKKYMELSEL  114 (115)
Q Consensus       103 ~~~~~~~~l~v~  114 (115)
                      |.....+.|.|.
T Consensus        86 g~~~~~~~l~V~   97 (99)
T 1g1c_A           86 GETSSHAFLLVQ   97 (99)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CcEEEEEEEEEe
Confidence            998888888875

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.11  E-value=1.2e-09  Score=65.73  Aligned_cols=95  Identities=12%  Similarity=0.163  Sum_probs=61.7

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCC--------cce--eEEEEE------------------------
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNL--------GRA--KKYMEL------------------------   62 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~--------~~~--~~~~~v------------------------   62 (115)
                      .|+.+...  .....|.|.+++.+|+|.|.|.+.+..        ...  ...+.|                        
T Consensus        70 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~  149 (232)
T 3qhz_H           70 TRLTISKDTSKSQVVLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGT  149 (232)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CE
T ss_pred             CceEEEeccCCCEEEEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCc
Confidence            45554432  356689999999999999999998541        000  002222                        


Q ss_pred             -------ecccCC--cEEEEEeCC-------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 -------SVSVSD--RRLMETRGN-------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 -------~g~~~~--~~~~~~~~~-------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                             .|.+++  .+.|..++.                   ...|.|......| |.|+|.+.|..+.......|.+.
T Consensus       150 v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~~  228 (232)
T 3qhz_H          150 AALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  228 (232)
T ss_dssp             EEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred             EEEEEEEeeEeCCCeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCCC
Confidence                   232332  345654331                   1357788888888 99999999999887777666553

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.11  E-value=5e-10  Score=61.84  Aligned_cols=54  Identities=17%  Similarity=0.210  Sum_probs=45.7

Q ss_pred             EEecccCCcEEEEEeCC----------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          61 ELSVSVSDRRLMETRGN----------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        61 ~v~g~~~~~~~~~~~~~----------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .+.|.|.|.+.|++++.                      ..+|.|.++...|+|.|+|.|.|..|.....+.|.|+
T Consensus        23 ~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~~l~v~   98 (126)
T 1he7_A           23 SVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM   98 (126)
T ss_dssp             EECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             EEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEEEEEEE
Confidence            34889999999987651                      2479999999999999999999999999888888764

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=3.9e-10  Score=61.11  Aligned_cols=63  Identities=16%  Similarity=0.265  Sum_probs=45.1

Q ss_pred             CcceEEEECCEEeCCCCCC----------CEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEEeccc
Q psy3272           1 MGMMSWYQDTFLIEPSVSD----------RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV   66 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~----------~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v~g~~   66 (115)
                      .|.+.|+|||.+|..  .+          ++.+......+.|+|.++..+|+|.|+|..-+. ....+.|.|.+.|
T Consensus        35 ~p~v~W~knG~~l~~--~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G~Y~~~~~~~-~~ssA~L~V~~~p  107 (112)
T 2e6q_A           35 IIQGTWFLNGEELKS--NEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPG-VQDSAALTIQESS  107 (112)
T ss_dssp             CCCCEEEESSCBCCS--SCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSEEEEEEETT-EEEEEEEEEECSS
T ss_pred             CCeEEEEECCEECcc--CcccccccccccEEEEEeCCcEEEEEECCCCHHHCccEEEEEECC-eeEEEEEEEeCCC
Confidence            378999999999987  55          666655556789999999999999997743321 1223366665443

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.11  E-value=1.4e-09  Score=58.68  Aligned_cols=62  Identities=16%  Similarity=0.136  Sum_probs=48.4

Q ss_pred             CCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC---------------CeEEEEEeccCCCCCeeeEEEeecCccc
Q psy3272          40 TDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG---------------NKHTLTIKNVQSTDFGNYSCVADNNLGR  104 (115)
Q Consensus        40 ~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~  104 (115)
                      .+.-...|.+             .|.|.+.+.|.+++               ....|.|.++..+|.|.|+|.|.|..|.
T Consensus        22 G~~v~l~C~~-------------~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~   88 (114)
T 2cqv_A           22 GESVELFGKV-------------TGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGS   88 (114)
T ss_dssp             TCCEEEEEEE-------------ESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCE
T ss_pred             CCeEEEEEEE-------------EcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCCc
Confidence            4445666766             45666666666544               2457999999999999999999999999


Q ss_pred             eeeEEEEEEe
Q psy3272         105 AKKYMELSEL  114 (115)
Q Consensus       105 ~~~~~~l~v~  114 (115)
                      ....+.|.|.
T Consensus        89 ~~~~~~l~V~   98 (114)
T 2cqv_A           89 RQAQVNLTVV   98 (114)
T ss_dssp             EECCEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            8888888875

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.11  E-value=9.8e-10  Score=68.01  Aligned_cols=34  Identities=15%  Similarity=0.332  Sum_probs=25.9

Q ss_pred             CCEEEEE--eCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272          19 DRRLMET--RGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        19 ~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      .++.+..  ......|.|.+++.+|+|.|.|.+.+.
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~  101 (280)
T 3fku_X           66 GRVTITADQSTRTAYMDLRSLRSEDTAVYYCARSPS  101 (280)
T ss_dssp             TTCEEEEETTTTEEEEEECSCCSTTCEECCEEECSS
T ss_pred             CcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecC
Confidence            3454432  234568999999999999999999875

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=3.6e-10  Score=61.76  Aligned_cols=58  Identities=14%  Similarity=0.169  Sum_probs=39.7

Q ss_pred             CcceEEEECCE-EeCCCCCCCEEEEEe-C-----CeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTF-LIEPSVSDRRLMETR-G-----NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~-~~~~~~~~~~~~~~~-~-----~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|||+.. .+......++.+... .     ....|+|.++...|+|.|.|++.+..+....
T Consensus        44 ~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~Cevsn~~g~~s~  108 (118)
T 2edn_A           44 KPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSC  108 (118)
T ss_dssp             CCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEEEEECSSCEEEE
T ss_pred             CCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEEEEEEEcCCcEEE
Confidence            37999999742 222111233343211 1     1578999999999999999999998887655

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.10  E-value=1.1e-09  Score=57.53  Aligned_cols=62  Identities=27%  Similarity=0.345  Sum_probs=48.1

Q ss_pred             CCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC----------------CeEEEEEeccCCCCCeeeEEEeecCcc
Q psy3272          40 TDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG----------------NKHTLTIKNVQSTDFGNYSCVADNNLG  103 (115)
Q Consensus        40 ~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~----------------~~~~l~i~~~~~~d~G~y~C~~~n~~~  103 (115)
                      .+.-...|.+             .|.|.+.+.|.+++                ....|.|.++..+|.|.|+|.|.|..|
T Consensus        20 G~~~~l~C~~-------------~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   86 (100)
T 2kdg_A           20 GRFCRMDFKV-------------SGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAG   86 (100)
T ss_dssp             TCCEEEEEEC-------------EEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCEEEEEEEE-------------EeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCC
Confidence            4455667776             45566666666543                224899999999999999999999999


Q ss_pred             ceeeEEEEEEe
Q psy3272         104 RAKKYMELSEL  114 (115)
Q Consensus       104 ~~~~~~~l~v~  114 (115)
                      ..+..+.|.|.
T Consensus        87 ~~~~~~~l~V~   97 (100)
T 2kdg_A           87 EATFTVQLDVL   97 (100)
T ss_dssp             EEEEEEEEEEE
T ss_pred             eEEEEEEEEEE
Confidence            98888888886

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=1.6e-09  Score=58.88  Aligned_cols=53  Identities=9%  Similarity=0.137  Sum_probs=44.2

Q ss_pred             ecccCCcEEEEEeC--------------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEeC
Q psy3272          63 SVSVSDRRLMETRG--------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE  115 (115)
Q Consensus        63 ~g~~~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~~  115 (115)
                      .|.|.|.+.|.+++              ....|.|.++..+|+|.|+|.|.|..|..+..+.|.|.+
T Consensus        49 ~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~  115 (118)
T 2e7c_A           49 QGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVE  115 (118)
T ss_dssp             EEESCCEEEEEETTEECCCSSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEEEEEEEC
T ss_pred             ccCCCCEEEEEECCEECCCCcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence            67777777777654              234699999999999999999999999988888888863

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.10  E-value=1.3e-09  Score=57.19  Aligned_cols=64  Identities=17%  Similarity=0.026  Sum_probs=49.0

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC----------------CeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG----------------NKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~----------------~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      ..+.-...|.+             .|.|.|.+.|.+++                ....|.|.++..+|.|.|+|.|.|..
T Consensus        19 ~G~~v~l~C~~-------------~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~   85 (99)
T 1u2h_A           19 EGQDVIMSIRV-------------QGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEY   85 (99)
T ss_dssp             TTCCEEEEEEE-------------EEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEEEEEE-------------EEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECC
Confidence            34445667766             55666667776643                22369999999999999999999999


Q ss_pred             cceeeEEEEEEeC
Q psy3272         103 GRAKKYMELSELE  115 (115)
Q Consensus       103 ~~~~~~~~l~v~~  115 (115)
                      |.....+.|.|.+
T Consensus        86 g~~~~~~~l~V~~   98 (99)
T 1u2h_A           86 GARQCEARLEVRG   98 (99)
T ss_dssp             EEEEEEEEEEEEC
T ss_pred             CceeEEEEEEEEC
Confidence            9998888888863

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.10  E-value=1.8e-10  Score=61.60  Aligned_cols=59  Identities=19%  Similarity=0.450  Sum_probs=45.5

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEEec
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV   64 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v~g   64 (115)
                      |.|.|+|++..+..  ..++.+........|.|.+++.+|+|.|.|.+.+.  .....+.|..
T Consensus        36 p~v~W~k~~~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~--~~~~~l~V~~   94 (108)
T 2dm7_A           36 APVEWKKGPETLRD--GGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQE--RTSATLTVRA   94 (108)
T ss_dssp             CCCEEESSSSBCCS--SSSCEEEEETTEEEEEESSCCTTTCSEEEEEETTE--EEEEECEEEC
T ss_pred             CeeEEEECCEECCC--CCCEEEEecCCEEEEEECCCCcccCEEEEEEEcCC--EEEEEEEEec
Confidence            68999999988876  67777666667788999999999999999999542  2222455544

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.09  E-value=3.8e-10  Score=58.60  Aligned_cols=46  Identities=15%  Similarity=0.362  Sum_probs=38.4

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCccee
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK   57 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~   57 (115)
                      .|.+.|+|++..+..  .         ....|.|.++..+|+|.|.|.+.+..+...
T Consensus        32 ~p~i~W~~~~~~~~~--~---------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~   77 (91)
T 3bfo_A           32 IPHYQWFKNELPLTH--E---------TKKLYMVPYVDLEHQGTYWCHVYNDRDSQD   77 (91)
T ss_dssp             CCEEEEEETTEECTT--C---------CSSEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred             CCEEEEEcCCeeCCc--C---------CCCeEEECCCCHHhCEEEEEEEEcCCCCEE
Confidence            368999999998876  2         235799999999999999999999887654

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.08  E-value=8.5e-10  Score=68.64  Aligned_cols=25  Identities=16%  Similarity=0.324  Sum_probs=22.3

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecC
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      ....|+|.+++.+|+|.|.|.+.+.
T Consensus        99 ~~~sL~I~~v~~~DsG~Y~C~~~~~  123 (291)
T 2gki_A           99 STAYMELSSLTSEDSAVYYCARGAY  123 (291)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEECG
T ss_pred             CEEEEEECcCCHHHCEEEEEEEecc
Confidence            4578999999999999999999765

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.08  E-value=1.3e-10  Score=61.22  Aligned_cols=56  Identities=27%  Similarity=0.523  Sum_probs=41.8

Q ss_pred             CcceEEEECCEEeCCCCCCCEE-EEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRL-METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|.|+|++..+..  ..++. .........|.|.++..+|+|.|.|.+.|..+....
T Consensus        37 ~p~v~W~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~   93 (100)
T 3caf_A           37 MPTMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH   93 (100)
T ss_dssp             CCEEEEEETTEECCG--GGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCEEEEEECCEEccc--ccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEE
Confidence            368999999998865  22210 112234458999999999999999999998887665

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.08  E-value=3.1e-09  Score=70.04  Aligned_cols=77  Identities=13%  Similarity=0.164  Sum_probs=53.5

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCCcc--------eeEEEEE------------------------------ecc-cC-
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNLGR--------AKKYMEL------------------------------SVS-VS-   67 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~--------~~~~~~v------------------------------~g~-~~-   67 (115)
                      ....|.|.+++.+|+|.|.|.+.+..+.        ....|.|                              .|. |. 
T Consensus        78 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~g~~v~L~C~~~g~~P~~  157 (475)
T 1iga_A           78 TTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQE  157 (475)
T ss_pred             CeEEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCccccCCCCeEEEEEEEeeecCCC
Confidence            4568999999999999999999875431        0112222                              333 44 


Q ss_pred             C-cEEEEEeCC--------------------eEEEEEeccCCCCCeeeEEEeecCccc
Q psy3272          68 D-RRLMETRGN--------------------KHTLTIKNVQSTDFGNYSCVADNNLGR  104 (115)
Q Consensus        68 ~-~~~~~~~~~--------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~  104 (115)
                      + .+.|..++.                    ...|.|..+...|.|.|+|.|.|..+.
T Consensus       158 p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  215 (475)
T 1iga_A          158 PLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP  215 (475)
T ss_pred             ceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCC
Confidence            4 777865431                    013677777778999999999999864

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=1e-09  Score=57.70  Aligned_cols=63  Identities=21%  Similarity=0.264  Sum_probs=49.7

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCcccee
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRAK  106 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~  106 (115)
                      ..+.-...|.+             .|.|.|.+.|.+++.            ...|.|.++..+|.|.|+|.|.|..|...
T Consensus        25 ~G~~v~l~C~~-------------~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~   91 (99)
T 2yr3_A           25 EGQDFVLQCSV-------------RGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVS   91 (99)
T ss_dssp             TTCCEEEECEE-------------EEESCCCCEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEECSSCEEE
T ss_pred             CCCeEEEEEEE-------------eeeCCCeEEEEECCEECcccceEeeCCeEEEEECCCChhhCEEEEEEEEECCCeEE
Confidence            34445666665             567778888877642            35799999999999999999999999988


Q ss_pred             eEEEEEEe
Q psy3272         107 KYMELSEL  114 (115)
Q Consensus       107 ~~~~l~v~  114 (115)
                      ..+.|.|.
T Consensus        92 ~~~~l~V~   99 (99)
T 2yr3_A           92 CSAWVTVH   99 (99)
T ss_dssp             EECCEEEC
T ss_pred             EEEEEEEC
Confidence            88877763

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=5.6e-10  Score=58.84  Aligned_cols=53  Identities=30%  Similarity=0.580  Sum_probs=41.0

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      |.|.|+|++..+... ..++..   .....|.|.++..+|+|.|.|.+.|..+....
T Consensus        38 p~v~W~~~~~~~~~~-~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~   90 (100)
T 2edj_A           38 PVISWLKEGFTFPGR-DPRATI---QEQGTLQIKNLRISDTGTYTCVATSSSGETSW   90 (100)
T ss_dssp             CEEEEEESSSEESSS-CSSCEE---CTTCCEEEESCCTTTCCEEEEEEECSSCCCBC
T ss_pred             CEEEEEECCEECCCC-CCCEEE---cCCCEEEEccCCcccCEEEEEEEEcCCCCEEE
Confidence            689999999888741 333332   23457999999999999999999998776655

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.08  E-value=1.9e-09  Score=56.99  Aligned_cols=63  Identities=21%  Similarity=0.230  Sum_probs=48.7

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC---------------CeEEEEEeccCCCCCeeeEEEeecCcc
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG---------------NKHTLTIKNVQSTDFGNYSCVADNNLG  103 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~y~C~~~n~~~  103 (115)
                      ..+.-...|.+             .|.|.|.+.|.+++               ....|.|.++..+|.|.|+|.|.|..|
T Consensus        22 ~G~~v~l~C~~-------------~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G   88 (103)
T 3qp3_A           22 CGQNTRFILNV-------------QSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKG   88 (103)
T ss_dssp             TTCCEEEEEEE-------------EEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CCCeEEEEEEE-------------EecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeCCC
Confidence            34445666766             55666666666543               345799999999999999999999999


Q ss_pred             ceeeEEEEEEe
Q psy3272         104 RAKKYMELSEL  114 (115)
Q Consensus       104 ~~~~~~~l~v~  114 (115)
                      .....+.|.|.
T Consensus        89 ~~~~~~~l~V~   99 (103)
T 3qp3_A           89 EASDYATLDVT   99 (103)
T ss_dssp             EEEEEEEEEEE
T ss_pred             cEEEEEEEEEE
Confidence            99888888875

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.07  E-value=6.1e-10  Score=61.51  Aligned_cols=64  Identities=11%  Similarity=0.225  Sum_probs=43.2

Q ss_pred             CcceEEEECCE-EeCCCCCCCEEEEE--eC----CeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEec
Q psy3272           1 MGMMSWYQDTF-LIEPSVSDRRLMET--RG----NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSV   64 (115)
Q Consensus         1 ~p~v~W~~~~~-~~~~~~~~~~~~~~--~~----~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g   64 (115)
                      .|.|.|||+.. .+......++.+..  ..    ....|+|.+++.+|+|.|.|++.+..+....  .|.|..
T Consensus        39 ~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           39 KPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             CCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             CCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            37999999742 11100023444321  11    1578999999999999999999998877766  677755

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.07  E-value=1.7e-09  Score=63.79  Aligned_cols=57  Identities=23%  Similarity=0.385  Sum_probs=47.6

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEe-CCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETR-GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY   59 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   59 (115)
                      .|.|.|++++.++..  ..++..... .....|.|.++..+|.|.|.|.+.|..+.....
T Consensus       146 ~p~v~W~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~  203 (212)
T 2r15_A          146 PPEVSWLKNEKALAQ--TDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSD  203 (212)
T ss_dssp             CCEEEEEETTEEECC--CSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CceEEEEECCeECcc--CCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEE
Confidence            368999999999987  677665544 556799999999999999999999998877663

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.07  E-value=6.5e-09  Score=62.93  Aligned_cols=35  Identities=29%  Similarity=0.391  Sum_probs=27.1

Q ss_pred             CCCEEEEEeC--CeEEEEEecCCCCCCeEEEEEeecC
Q psy3272          18 SDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        18 ~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      ..|+.+....  ....|+|.+++.+|+|.|.|.+.+.
T Consensus        66 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~  102 (242)
T 1hxm_B           66 SGKFEVDRIPETSTSTLTIHNVEKQDIATYYCALWEA  102 (242)
T ss_dssp             TTSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEE
T ss_pred             CCeEEEEecCCCcEEEEEECCCCcccCEEEEEeeecC
Confidence            4566554332  4678999999999999999999764

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.07  E-value=1.4e-09  Score=63.29  Aligned_cols=57  Identities=28%  Similarity=0.378  Sum_probs=48.1

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY   59 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   59 (115)
                      .|.+.|++++..+..  ..++..........|.|.++..+|.|.|.|.+.|..+.....
T Consensus       132 ~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  188 (194)
T 2a38_A          132 TPVVKFYRDGAEIQS--SLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATST  188 (194)
T ss_dssp             CCEEEEEETTEECCC--SSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCeEEEEECCEECCC--CCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEE
Confidence            368999999999887  677776666667789999999999999999999988877663

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.06  E-value=3.4e-09  Score=55.49  Aligned_cols=39  Identities=28%  Similarity=0.451  Sum_probs=34.6

Q ss_pred             CCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          76 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        76 ~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      +....|.|.++..+|.|.|+|.+.|..|.....+.|.|.
T Consensus        55 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~   93 (97)
T 2bk8_A           55 DGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVK   93 (97)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEET
T ss_pred             CCeEEEEEecCChhhCeEEEEEEECCCCeEeEEEEEEEE
Confidence            344589999999999999999999999998888888875

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.05  E-value=1.3e-09  Score=66.93  Aligned_cols=24  Identities=21%  Similarity=0.373  Sum_probs=21.7

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeec
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ....|.|.+++.+|+|.|.|.+.+
T Consensus        99 ~~~sL~I~~v~~~D~G~Y~C~~~~  122 (270)
T 3qib_D           99 SPCSLEIQSSEAGDSALYLCASSL  122 (270)
T ss_dssp             SCEEEEESSCCGGGCEEEEEEEES
T ss_pred             cEEEEEECCCCHhHCeEEEEEEec
Confidence            467899999999999999999985

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.03  E-value=1e-08  Score=61.66  Aligned_cols=93  Identities=12%  Similarity=0.132  Sum_probs=61.0

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecCCc------ce----eEEEEE------------------------
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLG------RA----KKYMEL------------------------   62 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~------~~----~~~~~v------------------------   62 (115)
                      .|+.+...  .....|+|.+++.+|+|.|.|.+.+..+      ..    ...+.|                        
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~  145 (230)
T 3n9g_H           66 GRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGT  145 (230)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCE
T ss_pred             CcEEEEecCCCCEEEEEECCCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCC
Confidence            45555433  2456799999999999999999976420      00    012332                        


Q ss_pred             -------ec-cc-CCcEEEEEeCC---------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEE
Q psy3272          63 -------SV-SV-SDRRLMETRGN---------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS  112 (115)
Q Consensus        63 -------~g-~~-~~~~~~~~~~~---------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~  112 (115)
                             .| .| ...+.|  ++.                     ...|.|......| |.|+|.+.+..+.......+.
T Consensus       146 v~L~C~~~~~~P~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~  222 (230)
T 3n9g_H          146 AALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVE  222 (230)
T ss_dssp             EEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECC
T ss_pred             EEEEEEEEeEECCCEEEEE--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEcc
Confidence                   22 33 223555  221                     1268888888889 999999999988776666665


Q ss_pred             Ee
Q psy3272         113 EL  114 (115)
Q Consensus       113 v~  114 (115)
                      |.
T Consensus       223 v~  224 (230)
T 3n9g_H          223 PK  224 (230)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=1.1e-09  Score=59.40  Aligned_cols=61  Identities=25%  Similarity=0.413  Sum_probs=45.6

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEeccc
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSVSV   66 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g~~   66 (115)
                      |.|.|+|++..+... ..++....   ...|.|.++..+|+|.|.|.+.|..+....  .|.|...+
T Consensus        38 p~i~W~k~g~~~~~~-~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~  100 (118)
T 2eo9_A           38 PTILWRKDGVLVSTQ-DSRIKQLE---NGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFG  100 (118)
T ss_dssp             CEEEEEESSSBCCTT-STTEEEEE---TTEEEEESCCGGGCCCEEEEEECSSCEEEEECCEEEECCS
T ss_pred             CEEEEEECCEECcCC-CCeEEEcc---CCEEEEccCCcCCCEEEEEEEEcCCCcEEEEEEEEEEeCC
Confidence            689999999887641 34444322   347999999999999999999998887765  56665443

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.02  E-value=1.4e-09  Score=63.45  Aligned_cols=57  Identities=23%  Similarity=0.333  Sum_probs=47.8

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEec-CCCCCCeEEEEEeecCCcceeEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKN-VQSTDFGNYSCVADNNLGRAKKY   59 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~y~C~~~~~~~~~~~~   59 (115)
                      .|.|.|++++..+..  ..++..........|.|.+ +..+|.|.|.|.+.|..+.....
T Consensus       133 ~p~i~W~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~  190 (197)
T 2j8h_A          133 DPVITWQKGQDLIDN--NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKT  190 (197)
T ss_dssp             CCEEEEEESSCEECS--SSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCcEEEEECCEEeec--CCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEE
Confidence            368999999999886  6676665556678999999 99999999999999988877663

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.02  E-value=2.6e-09  Score=57.19  Aligned_cols=57  Identities=14%  Similarity=0.264  Sum_probs=39.9

Q ss_pred             cceEEEECCEEe-CCCCCCCEEEEE--e----CCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           2 GMMSWYQDTFLI-EPSVSDRRLMET--R----GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         2 p~v~W~~~~~~~-~~~~~~~~~~~~--~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      |.|+|||++... ......++....  .    .....|.|.+++.+|+|.|.|.+.|..+....
T Consensus        37 p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~  100 (108)
T 3cx2_A           37 PVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCS  100 (108)
T ss_dssp             CEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             cEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccCEEEEEEEecCCCceEE
Confidence            789999987322 111123443321  1    12568999999999999999999999888776

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.01  E-value=1.8e-09  Score=57.15  Aligned_cols=45  Identities=24%  Similarity=0.583  Sum_probs=38.5

Q ss_pred             eEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272           4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus         4 v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      |.|+|++..+..  ..++.+........|.|.+++.+|+|.|.|.+.
T Consensus        39 v~W~k~~~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~g   83 (103)
T 2e7b_A           39 VKWCYGNNVLRP--GDKYSLRQEGAMLELVVRNLRPQDSGRYSCSFG   83 (103)
T ss_dssp             CEEEESSSBCCC--SSSEEEEECSSEEEEEECSCCTTTCCCEEEECS
T ss_pred             eEEEECCEECCC--CCcEEEEEcCCEEEEEEccCCcccCEEEEEEEC
Confidence            999999998876  677777666667789999999999999999943

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.01  E-value=4.4e-09  Score=58.05  Aligned_cols=37  Identities=16%  Similarity=0.180  Sum_probs=33.8

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ...|.|.++..+|+|.|+|.+.|..+..+..+.|.|.
T Consensus        74 ~~~L~I~~v~~~DaG~Y~Cevsn~~g~~~~~~~L~V~  110 (126)
T 2dav_A           74 TFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH  110 (126)
T ss_dssp             EEEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEE
T ss_pred             eEEEEEccCCcccCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            3679999999999999999999999999888888885

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.01  E-value=2.5e-09  Score=72.42  Aligned_cols=58  Identities=26%  Similarity=0.430  Sum_probs=52.9

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM   60 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~   60 (115)
                      .|.|+|+|++.++..  ..++.+........|.|.++..+|+|.|+|.+.|..|.....+
T Consensus       511 ~P~v~W~k~~~el~~--s~~~~i~~~~~~~~L~I~~~~~~D~G~Yt~~A~N~~G~~~~~v  568 (573)
T 3uto_A          511 PPVVTWHKDDRELKQ--SVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIV  568 (573)
T ss_dssp             CCEEEEEETTEECCS--SSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CCeEEEEECCEEccc--CCcEEEEEcCCEEEEEEcCCCcccCcEEEEEEEeCCCcEEEEE
Confidence            489999999999988  8888888888899999999999999999999999999988843

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.00  E-value=6e-09  Score=54.56  Aligned_cols=38  Identities=24%  Similarity=0.408  Sum_probs=33.9

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ....|.|.++..+|.|.|+|.+.|..|.....+.|.|.
T Consensus        60 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~   97 (99)
T 3puc_A           60 GGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK   97 (99)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEEE
Confidence            34479999999999999999999999998888888875

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.00  E-value=5.1e-09  Score=57.03  Aligned_cols=36  Identities=33%  Similarity=0.413  Sum_probs=33.1

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ..|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus        74 ~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~  109 (122)
T 3s35_X           74 STLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH  109 (122)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEEEECCCCcccCEEEEEEEccCCCceEEEEEEEEe
Confidence            479999999999999999999999998888888875

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=98.99  E-value=1.3e-09  Score=59.24  Aligned_cols=52  Identities=21%  Similarity=0.218  Sum_probs=43.1

Q ss_pred             ecccCCcEEEEEeC-------------------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 SVSVSDRRLMETRG-------------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ~g~~~~~~~~~~~~-------------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .|.|.|.+.|.+++                   ....|.|.++..+|.|.|+|.|.|..|.....+.|.|.
T Consensus        30 ~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~  100 (118)
T 1wwc_A           30 RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL  100 (118)
T ss_dssp             ECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCS
T ss_pred             eeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEEEc
Confidence            67778888887654                   13479999999999999999999999999888887654

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=98.99  E-value=7.2e-10  Score=66.84  Aligned_cols=49  Identities=10%  Similarity=0.204  Sum_probs=33.5

Q ss_pred             ceEEEECCEEe-CCCCCCCEEEEEeC----CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLI-EPSVSDRRLMETRG----NKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~-~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|+++|..+ ..  ..........    ....|.|.++..+|.|.|.|.+.+..
T Consensus        47 ~v~W~~~g~~~~~~--~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~  100 (231)
T 2w59_A           47 SVTWTREKSGNLRP--DPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEE  100 (231)
T ss_dssp             EEEEECSSSSCCCC--CCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTT
T ss_pred             EEEEEcCCeecccc--ccccceECCCCcEEEEEEEEecchhccCCCEEEEEEEcCC
Confidence            89999998876 32  2221111011    23579999999999999999998754

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=2.1e-09  Score=56.55  Aligned_cols=53  Identities=28%  Similarity=0.309  Sum_probs=43.6

Q ss_pred             ecccCCcEEEEEeCC-------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEeC
Q psy3272          63 SVSVSDRRLMETRGN-------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE  115 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~-------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~~  115 (115)
                      .|.|.+.+.|.+++.             ...|.|.++..+|.|.|+|.+.|..|.....+.|.|.+
T Consensus        33 ~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~   98 (100)
T 2edj_A           33 TGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE   98 (100)
T ss_dssp             ECSSCCEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEECSSCCCBCCEEEEEES
T ss_pred             EEcCCCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEcCCCCEEEEEEEEEec
Confidence            567777777776542             23699999999999999999999999988888888864

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=98.98  E-value=1.4e-08  Score=62.74  Aligned_cols=90  Identities=17%  Similarity=0.231  Sum_probs=65.2

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE----E--------EEE--------
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK----Y--------MEL--------   62 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~----~--------~~v--------   62 (115)
                      ++.|+|||.++..            ....|.|..+...|+|.|.|.+.+..+....    .        +.+        
T Consensus        37 TYqWyKDG~~IsG------------aT~tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs~VtVT~~a~l~i~it~P~s~~v  104 (304)
T 3shs_A           37 TYTWTKDDQPHEN------------NTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYV  104 (304)
T ss_dssp             EEEEEETTEECSC------------CSSEEEESSCCGGGCEEEEEEEEETTTCCEEECCCEEECBCCEEEEESSCSEEEE
T ss_pred             eEEEEECCccccC------------CcceEEeeeccccCCeEEEEEEEECCCCeeeeeeEEEeccCceeEEecCCCceec
Confidence            6899999988775            2457888899999999999999875543321    0        011        


Q ss_pred             --------------e-ccc-----CCcEEEEEeCCe----EEEEEeccCCCCCeeeEEEeecCccc
Q psy3272          63 --------------S-VSV-----SDRRLMETRGNK----HTLTIKNVQSTDFGNYSCVADNNLGR  104 (115)
Q Consensus        63 --------------~-g~~-----~~~~~~~~~~~~----~~l~i~~~~~~d~G~y~C~~~n~~~~  104 (115)
                                    . |.+     ...+.|.+++..    ..+++......++|.|+|.+.|..+.
T Consensus       105 ssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~IsgAq~lT~sS~TateaG~YtV~VTn~~~~  170 (304)
T 3shs_A          105 SSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGESED  170 (304)
T ss_dssp             CSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEESSSEEEECSCCGGGCEEEEEEEESSSGG
T ss_pred             cCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccCccccceeeEEecCCeEEEEEEEcCCCC
Confidence                          1 223     358888887632    35677777888999999999999773

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=98.98  E-value=3.4e-09  Score=55.74  Aligned_cols=52  Identities=23%  Similarity=0.388  Sum_probs=42.9

Q ss_pred             ecccCCcEEEEEeCC----------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 SVSVSDRRLMETRGN----------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .|.|.+.+.|.+++.                ...|.|.++..+|.|.|+|.|.|..|.....+.|.|.
T Consensus        33 ~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~Vv  100 (100)
T 3caf_A           33 GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV  100 (100)
T ss_dssp             EEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             cccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEEEEEEC
Confidence            567777778876541                1279999999999999999999999998888888773

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=98.97  E-value=7.4e-09  Score=54.29  Aligned_cols=65  Identities=26%  Similarity=0.315  Sum_probs=50.0

Q ss_pred             CCCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCC----------eEEEEEeccCCCCCeeeEEEeecCccceee
Q psy3272          38 QSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN----------KHTLTIKNVQSTDFGNYSCVADNNLGRAKK  107 (115)
Q Consensus        38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~  107 (115)
                      ...+.-...|.+.            .|.|.+.+.|.+++.          ...|.|.++..+|+|.|+|.+.|..|....
T Consensus        23 ~~G~~v~l~C~~~------------~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~   90 (98)
T 1gl4_B           23 RPGADVTFICTAK------------SKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQG   90 (98)
T ss_dssp             CTTCCEEEEEEEE------------ESSSCCEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             ecCCCEEEEEeCC------------CCCCCcEEEEEeCCCCCCCceeecCCCEEEEeCCChhhCEEEEEEecCCCCcccc
Confidence            4455567778763            246677777776421          237999999999999999999999999888


Q ss_pred             EEEEEEe
Q psy3272         108 YMELSEL  114 (115)
Q Consensus       108 ~~~l~v~  114 (115)
                      .+.|.|.
T Consensus        91 ~~~l~V~   97 (98)
T 1gl4_B           91 TATLHVQ   97 (98)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            8888774

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=98.97  E-value=2.7e-09  Score=56.83  Aligned_cols=53  Identities=23%  Similarity=0.440  Sum_probs=38.7

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEe-C-------CeEEEEEecCCCCCCeEEEEEeecCCcce
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETR-G-------NKHTLTIKNVQSTDFGNYSCVADNNLGRA   56 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~-~-------~~~~l~i~~~~~~d~G~y~C~~~~~~~~~   56 (115)
                      |.+.|+|++..+..  ......... .       ....|.|.++..+|+|.|.|.+.+..+..
T Consensus        42 ~~i~W~k~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~  102 (112)
T 3so5_A           42 MTFAWXXDNEALQD--AEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSS  102 (112)
T ss_dssp             CEEEEEETTEECTT--CEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             EEEEEccCCccccc--ccccceeeeeccCCCccccceEEEEeccccccCCeEEEEEEeCCCcE
Confidence            68999999988765  221111110 0       14789999999999999999999988763

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=9.5e-10  Score=57.62  Aligned_cols=42  Identities=24%  Similarity=0.471  Sum_probs=35.2

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG   54 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~   54 (115)
                      |.|.|+|++..+..  .         ....|.|.++..+|+|.|.|.+.+..+
T Consensus        40 ~~v~W~k~~~~~~~--~---------~~~~L~i~~v~~~d~G~Y~C~a~n~~~   81 (96)
T 2ens_A           40 PQIHWMKDGVPLPL--P---------PSPVLILPEIGPQDQGTYSCVATHSSH   81 (96)
T ss_dssp             CCCCCEESSSBCSS--C---------CCSEEEEESCCTTTCEEEECEECCSSC
T ss_pred             CEEEEEECCEECcC--C---------CCCEEEECCCCcccCEEEEEEEEeCCC
Confidence            68999999987765  2         356899999999999999999998543

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=98.97  E-value=1.1e-08  Score=70.79  Aligned_cols=112  Identities=17%  Similarity=0.143  Sum_probs=69.0

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEe---CCeEEEEEecCCCCCCeEEEEEeecCCc----c-----------------e
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETR---GNKHTLTIKNVQSTDFGNYSCVADNNLG----R-----------------A   56 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~~~~~----~-----------------~   56 (115)
                      .|.|.|.|+|..+..  -....+...   .....+.+..+...+.|.|.|.......    .                 .
T Consensus       105 ~p~i~W~k~g~~~~~--~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p~~~~~~~~~v~~G~~v  182 (731)
T 2v5y_A          105 LGNPIWNISGDPTRT--WNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFA  182 (731)
T ss_dssp             CCSEEEEECCCCCSS--CEEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSCEECCCCCEEEETTSCE
T ss_pred             ccceeEEEeCCcCCc--eeEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecccccccccccccceEEeCCCcE
Confidence            378999999976543  121112221   2334466666666667766665321000    0                 0


Q ss_pred             eEEEEEecccCCcEE-EEE--eCC---------------eEEEEEeccCCCCCeeeEEEeecCccc-eeeEEEEEEe
Q psy3272          57 KKYMELSVSVSDRRL-MET--RGN---------------KHTLTIKNVQSTDFGNYSCVADNNLGR-AKKYMELSEL  114 (115)
Q Consensus        57 ~~~~~v~g~~~~~~~-~~~--~~~---------------~~~l~i~~~~~~d~G~y~C~~~n~~~~-~~~~~~l~v~  114 (115)
                      .....+.|.|.|.+. |.+  ++.               ...|.|.++...|.|.|+|.|.|..|. .+..+.|.|.
T Consensus       183 ~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~  259 (731)
T 2v5y_A          183 TFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK  259 (731)
T ss_dssp             EEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEe
Confidence            002223788888877 652  221               247999999999999999999999997 6666666664

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=98.97  E-value=3.7e-09  Score=54.80  Aligned_cols=63  Identities=19%  Similarity=0.092  Sum_probs=49.0

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCC------eEEEEEeccCCCCCeeeEEEeecCcccee-eEEEE
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN------KHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMEL  111 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~-~~~~l  111 (115)
                      ..+.-...|.+             .|.|.|.+.|.+++.      ...|.|.++..+|+|.|+|.+.|..|... ..+.|
T Consensus        17 ~G~~~~l~C~~-------------~g~p~p~i~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l   83 (91)
T 3bfo_A           17 PGSTLVLQCVA-------------VGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEI   83 (91)
T ss_dssp             TTSCEEEECEE-------------ECSSCCEEEEEETTEECTTCCSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEE
T ss_pred             CCCcEEEEEEe-------------ccCCCCEEEEEcCCeeCCcCCCCeEEECCCCHHhCEEEEEEEEcCCCCEEeeeEEE
Confidence            44555667765             678888899988653      34799999999999999999999999744 45667


Q ss_pred             EEe
Q psy3272         112 SEL  114 (115)
Q Consensus       112 ~v~  114 (115)
                      .|.
T Consensus        84 ~V~   86 (91)
T 3bfo_A           84 IID   86 (91)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            664

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.96  E-value=4.1e-09  Score=69.46  Aligned_cols=32  Identities=13%  Similarity=0.040  Sum_probs=26.3

Q ss_pred             EEEEeccCCCCCeeeEEEeecCccceeeEEEE
Q psy3272          80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL  111 (115)
Q Consensus        80 ~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l  111 (115)
                      .|.|.++..+|.|.|+|.|.|..+.......|
T Consensus       310 ~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v  341 (475)
T 1iga_A          310 VLPGCAEPWNHGKTFTCTAAYPESKTPLTATL  341 (475)
T ss_pred             EEEEchHHhccCCcEEEEEEcCCCCCceEEEe
Confidence            58999999999999999999999875443333

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.96  E-value=2e-08  Score=61.97  Aligned_cols=33  Identities=27%  Similarity=0.401  Sum_probs=26.2

Q ss_pred             CCEEEEE-eCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          19 DRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        19 ~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      .|+.+.. ......|.|.+++.+|+|.|.|.+.+
T Consensus        88 ~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~  121 (279)
T 2wbj_D           88 DKFLINHASLTLSTLTVTSAHPEDSSFYICSARD  121 (279)
T ss_dssp             SSEEEEECSSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CcEEEEeCCCCEEEEEEccCCccCCEEEEEEEcc
Confidence            4555443 23567899999999999999999987

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=98.96  E-value=4.3e-09  Score=61.22  Aligned_cols=57  Identities=26%  Similarity=0.458  Sum_probs=47.7

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCC-CCCeEEEEEeecCCcceeEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQS-TDFGNYSCVADNNLGRAKKY   59 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~y~C~~~~~~~~~~~~   59 (115)
                      .|.+.|++++..+..  ..++..........|.|.++.. +|.|.|.|.+.|..+.....
T Consensus       132 ~p~v~W~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~  189 (197)
T 3lcy_A          132 VPAMTWFHGQKLLQN--SENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAI  189 (197)
T ss_dssp             CCEEEEEETTEECCC--CSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEE
T ss_pred             CCeeEEeECCEECCC--CCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEE
Confidence            368999999999987  7777766666668999999985 89999999999998877663

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=98.96  E-value=5.5e-09  Score=61.85  Aligned_cols=58  Identities=24%  Similarity=0.432  Sum_probs=43.9

Q ss_pred             CcceEEEECCEEeCCC-CCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPS-VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|.|++++..+... ...++..........|.|.++..+|.|.|.|.+.|..|...+
T Consensus       137 ~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s  195 (212)
T 2yd6_A          137 DPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYS  195 (212)
T ss_dssp             CCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCcccc
Confidence            3689999999988752 124444444456789999999999999999999999887765

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=5.9e-10  Score=60.39  Aligned_cols=60  Identities=18%  Similarity=0.354  Sum_probs=41.7

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEE-eCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEEecc
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVS   65 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v~g~   65 (115)
                      |.|+|+|++..+..  ..++.+.. ......|.|.++..+|+|.|.|.+.+  ......|.|.+.
T Consensus        43 p~v~W~k~g~~l~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~g~--~~~~~~L~V~~~  103 (115)
T 2cr6_A           43 EPVHWFLDKTPLHA--NELNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGD--QRASAALRVTEK  103 (115)
T ss_dssp             CSCEEEESSCEECC--SSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEETT--EECCEEEEEECC
T ss_pred             CccEEEECCEECCC--CCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEECC--eeEEEEEEEECC
Confidence            68999999998876  55544331 24456899999999999999999532  122225666543

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=98.95  E-value=3.4e-08  Score=60.29  Aligned_cols=33  Identities=12%  Similarity=0.222  Sum_probs=27.0

Q ss_pred             EEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        80 ~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      .|.|......| |.|+|.+.+..+.......+.+
T Consensus       217 ~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~  249 (256)
T 3sob_H          217 VVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  249 (256)
T ss_dssp             EEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEECHHHcCC-ceEEEEEEeCCCCcceEEEecc
Confidence            68888888889 9999999999987666655554

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=98.94  E-value=1.5e-08  Score=61.27  Aligned_cols=34  Identities=12%  Similarity=0.187  Sum_probs=27.5

Q ss_pred             EEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        80 ~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .|.|......| |.|+|.+.|..+.......|.+.
T Consensus       203 ~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~~  236 (239)
T 3tv3_H          203 VVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  236 (239)
T ss_dssp             EEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred             EEEEchhhcCC-CEEEEEEEECCCCceEEEEeccc
Confidence            57788888888 99999999999887766666553

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=98.94  E-value=5.8e-09  Score=63.32  Aligned_cols=51  Identities=12%  Similarity=0.193  Sum_probs=33.4

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEE----eCCeEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMET----RGNKHTLTIKNVQSTDFGNYSCVADNNLG   54 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~~~~~~~   54 (115)
                      .|+|+|++..+... ........    ......|.|.++..+|.|.|.|.+.+..+
T Consensus        52 ~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~  106 (239)
T 1i1c_A           52 RFSWFIDDVEVHTA-QTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAF  106 (239)
T ss_dssp             EEEEEESSCEECCC-EECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSS
T ss_pred             EEEEEECCccccCc-ccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccC
Confidence            79999998765421 00000000    01235799999999999999999987655

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=2.6e-09  Score=58.36  Aligned_cols=38  Identities=16%  Similarity=0.028  Sum_probs=34.8

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEeC
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE  115 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~~  115 (115)
                      ...|.|.++..+|+|.|+|.+.|..|..+..+.|.|.+
T Consensus        79 ~~~L~I~~v~~~D~G~Y~Cevsn~~g~~s~~~~L~V~~  116 (118)
T 2edn_A           79 TVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA  116 (118)
T ss_dssp             EEEEEESSCCTTTCSCEEEEEECSSCEEEEEECCEEEC
T ss_pred             eEEEEEeeCChhhCEEEEEEEEEcCCcEEEEEEEEEEc
Confidence            46799999999999999999999999999999998863

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=98.93  E-value=1.7e-09  Score=57.82  Aligned_cols=38  Identities=37%  Similarity=0.517  Sum_probs=34.6

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ....|.|.++..+|.|.|+|.+.|..|..+..+.|.|.
T Consensus        68 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           68 YKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             SEEEEEECCCCSSCCSEEEECCBCSSCBCCEEEEEEEC
T ss_pred             CEEEEEECcCCchhCEEEEEEEEeCCCeEEEEEEEEEE
Confidence            35689999999999999999999999998889888875

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.93  E-value=6.9e-09  Score=56.27  Aligned_cols=35  Identities=34%  Similarity=0.361  Sum_probs=32.8

Q ss_pred             EEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        80 ~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .|.|.++..+|.|.|+|.|.|..|.....+.|.|.
T Consensus        74 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  108 (116)
T 2kkq_A           74 TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT  108 (116)
T ss_dssp             EEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEEe
Confidence            79999999999999999999999998888888875

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=98.92  E-value=6.1e-09  Score=55.45  Aligned_cols=52  Identities=27%  Similarity=0.241  Sum_probs=36.4

Q ss_pred             ecccCCcEEEEEeCC-------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 SVSVSDRRLMETRGN-------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~-------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .|.|.+.+.|.+++.             ...|.|.++..+|.|.|+|.+.|..|.....+.|.|.
T Consensus        35 ~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~   99 (108)
T 3kvq_A           35 SGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE   99 (108)
T ss_dssp             C----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEEEEC----CEEEEEEEEEE
T ss_pred             cCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEEEEEeCCCceEEEEEEEEe
Confidence            556677777776542             2479999999999999999999999998888888875

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=5.1e-09  Score=56.05  Aligned_cols=36  Identities=28%  Similarity=0.240  Sum_probs=32.5

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ..|.|.++..+|.|.|+|.+.|..|.....+.|.|.
T Consensus        66 ~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~  101 (110)
T 2dm2_A           66 CSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQ  101 (110)
T ss_dssp             EEEEESSCCTTTCSCCEEEEECTTCCEEECCCEEEE
T ss_pred             EEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEEE
Confidence            479999999999999999999999998887777775

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=98.91  E-value=6.1e-09  Score=60.25  Aligned_cols=53  Identities=32%  Similarity=0.698  Sum_probs=43.5

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      |.+.|++++..+..  ..++..  ......|.|.++..+|.|.|.|.+.+..+....
T Consensus       128 ~~v~W~~~g~~~~~--~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  180 (189)
T 2v5t_A          128 PAISWFRNGKLIEE--NEKYIL--KGSNTELTVRNIINSDGGPYVCRATNKAGEDEK  180 (189)
T ss_dssp             CEEEEEETTEECCC--SSSEEE--ETTTTEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CeEEEEECCEECcC--CCcEEE--ecCCCEEEEcCCChhhCeeEEEEEEeCCCceeE
Confidence            68999999998876  555443  244568999999999999999999998877766

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=98.91  E-value=1.5e-08  Score=57.45  Aligned_cols=53  Identities=26%  Similarity=0.247  Sum_probs=44.3

Q ss_pred             EecccCCcEEEEEeC----------------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          62 LSVSVSDRRLMETRG----------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        62 v~g~~~~~~~~~~~~----------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      +.|.|.+.+.|.+++                ....|.|.++...|.|.|+|.|.|..|.....+.|.|.
T Consensus        65 ~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  133 (154)
T 1fhg_A           65 VEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE  133 (154)
T ss_dssp             EEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEEEEEEEe
Confidence            367788888887754                13479999999999999999999999998888888775

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=98.91  E-value=2.5e-08  Score=57.93  Aligned_cols=58  Identities=31%  Similarity=0.449  Sum_probs=45.2

Q ss_pred             CcceEEEE--CCEEeCCC-CCCCEEEEEeCCeEEEEEecCC-CCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQ--DTFLIEPS-VSDRRLMETRGNKHTLTIKNVQ-STDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~--~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.+.|++  ++..+... ...++..........|.|.++. .+|.|.|.|.+.|..+....
T Consensus       121 ~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~  182 (190)
T 2wv3_A          121 HPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASV  182 (190)
T ss_dssp             CCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEE
T ss_pred             CCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCccee
Confidence            36899999  78776521 1556666555566789999999 69999999999999887766

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=98.89  E-value=3.5e-09  Score=55.56  Aligned_cols=50  Identities=28%  Similarity=0.389  Sum_probs=37.1

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      |.|.|+|++.....  .. ..    .....|.|.+++.+|+|.|.|.+.|..+....
T Consensus        41 ~~v~W~k~~~~~~~--~~-~~----~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~   90 (98)
T 1gl4_B           41 YTLVWTRLHNGKLP--SR-AM----DFNGILTIRNVQPSDAGTYVCTGSNMFAMDQG   90 (98)
T ss_dssp             CEEEEEEGGGBCCC--TT-EE----EETTEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             cEEEEEeCCCCCCC--ce-ee----cCCCEEEEeCCChhhCEEEEEEecCCCCcccc
Confidence            68999997544332  21 11    12347999999999999999999998877665

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=98.89  E-value=6.7e-09  Score=61.44  Aligned_cols=100  Identities=18%  Similarity=0.181  Sum_probs=55.1

Q ss_pred             ceEEEECCEEeCCCCCCC-EEEEEeCC----eEEEEEecCCCCCCeEEEEEeecCCcce--eEEE------------EE-
Q psy3272           3 MMSWYQDTFLIEPSVSDR-RLMETRGN----KHTLTIKNVQSTDFGNYSCVADNNLGRA--KKYM------------EL-   62 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~-~~~~~~~~----~~~l~i~~~~~~d~G~y~C~~~~~~~~~--~~~~------------~v-   62 (115)
                      .|.|+|++.++..  ... ........    ...|.|......|.|.|.|.+.+..+..  ...+            .+ 
T Consensus        38 ~v~W~k~~~~~~~--~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~  115 (207)
T 1l6x_A           38 KFNWYVDGVEVHN--AKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTL  115 (207)
T ss_dssp             EEEEEETTEEECC--CEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEE
T ss_pred             EEEEEECCccccC--cccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEE
Confidence            8999999987754  210 00000011    1123333333345999999999865542  1122            11 


Q ss_pred             ------------------ec-ccC-CcEEEEEeCCe--------------------EEEEEeccCCCCCeeeEEEeecCc
Q psy3272          63 ------------------SV-SVS-DRRLMETRGNK--------------------HTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        63 ------------------~g-~~~-~~~~~~~~~~~--------------------~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                                        .| .|. +.+.|.+++..                    ..|.|......|.|.|+|.|.|..
T Consensus       116 ~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~  195 (207)
T 1l6x_A          116 PPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA  195 (207)
T ss_dssp             CCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCC
Confidence                              34 343 37888776521                    023333333456899999999987


Q ss_pred             cc
Q psy3272         103 GR  104 (115)
Q Consensus       103 ~~  104 (115)
                      ..
T Consensus       196 l~  197 (207)
T 1l6x_A          196 LH  197 (207)
T ss_dssp             SG
T ss_pred             cC
Confidence            54

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.89  E-value=2.6e-08  Score=57.57  Aligned_cols=57  Identities=19%  Similarity=0.417  Sum_probs=44.2

Q ss_pred             cceEEEE---CCE-EeCCCCCCCEEEEEeCCeEEEEEecCC-CCCCeEEEEEeecCCcceeE
Q psy3272           2 GMMSWYQ---DTF-LIEPSVSDRRLMETRGNKHTLTIKNVQ-STDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         2 p~v~W~~---~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~~   58 (115)
                      |.|.|++   ++. .+......++.+........|.|.+++ .+|.|.|.|.+.|..+....
T Consensus       114 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~  175 (184)
T 3b5h_A          114 TDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQA  175 (184)
T ss_dssp             CEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEE
T ss_pred             CeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceE
Confidence            7899999   444 343312356666666677899999999 89999999999999887766

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.89  E-value=8.2e-09  Score=61.29  Aligned_cols=35  Identities=31%  Similarity=0.380  Sum_probs=27.1

Q ss_pred             CCCEEEEEe---CCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272          18 SDRRLMETR---GNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        18 ~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      ..|+.+...   .....|.|.+++.+|+|.|.|.+.+.
T Consensus        56 ~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   93 (207)
T 1ypz_E           56 NGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTW   93 (207)
T ss_dssp             ETTEEEEECTTTCSEEEEEECSCCGGGCEEEEEEEECB
T ss_pred             CCCEEEEeccCCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            355555433   45678999999999999999999765

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.89  E-value=6e-09  Score=61.24  Aligned_cols=57  Identities=19%  Similarity=0.443  Sum_probs=46.1

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE-EEEE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK-YMEL   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~-~~~v   62 (115)
                      |.+.|++++..+..  ..++...  .....|.|.++..+|.|.|.|.+.|..+...+ .+.+
T Consensus       139 p~i~W~~~g~~l~~--~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l  196 (208)
T 3r4d_A          139 ANIQWLFNSQSLQL--TERMTLS--QNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKL  196 (208)
T ss_dssp             CEEEEEETTEECCC--CSSEEEE--TTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEE
T ss_pred             CceEEEECCEeCCC--CCCeEEc--CCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceee
Confidence            68999999999876  5655432  34478999999999999999999999888776 4444

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=98.87  E-value=8.4e-09  Score=53.87  Aligned_cols=61  Identities=18%  Similarity=0.322  Sum_probs=45.7

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCC-----------eEEEEEeccCCCCCeeeEEEeecCccceee
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN-----------KHTLTIKNVQSTDFGNYSCVADNNLGRAKK  107 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~-----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~  107 (115)
                      ..+.-...|.+             .|.| +.+.|.+++.           ...|.|.++..+|+|.|+|.|.|..|..+.
T Consensus        23 ~G~~v~l~C~~-------------~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~   88 (95)
T 2ckn_A           23 PGDLLQLRCRL-------------RDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGSDTT   88 (95)
T ss_dssp             TTSCEEEECCE-------------ESSC-CEEEEEBTTBCCCCCSSEEECSSEEEESSCCGGGSEEEEEEEEETTEEEEE
T ss_pred             CCCeEEEEEEC-------------CCCC-CceEEEECCEecCCCCCEEEeCCEEEECCCChHHCEEEEEEeccCCCcEEE
Confidence            44555667766             4444 4566655431           347999999999999999999999999888


Q ss_pred             EEEEEE
Q psy3272         108 YMELSE  113 (115)
Q Consensus       108 ~~~l~v  113 (115)
                      .+.|.|
T Consensus        89 ~~~l~V   94 (95)
T 2ckn_A           89 YFSVNV   94 (95)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            888876

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=1.2e-08  Score=53.66  Aligned_cols=36  Identities=19%  Similarity=0.466  Sum_probs=32.6

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ..|.|.++..+|.|.|+|.|.|..|.....+.|.|.
T Consensus        54 ~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~   89 (99)
T 2cr3_A           54 EEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS   89 (99)
T ss_dssp             SEEEETTCCTTTCEEEEEEEEETTEEEEEEEEECBC
T ss_pred             CEEEEccCCHHHCEEEEEEEEeCCceEEEEEEEEEe
Confidence            379999999999999999999999998888888775

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=98.87  E-value=4.6e-08  Score=59.62  Aligned_cols=34  Identities=18%  Similarity=0.319  Sum_probs=26.2

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ..|+.+...  .....|+|.+++.+|+|.|.|.+.+
T Consensus        64 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~   99 (248)
T 3u2s_H           64 WGRLSISRDNSKDTLYLQMNSLRVEDTATYFCVREA   99 (248)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCcEEEEecCCCCEEEEEECCCCHHHCEEEEEEEeC
Confidence            355555432  3567899999999999999999975

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=98.87  E-value=1.8e-09  Score=63.00  Aligned_cols=47  Identities=21%  Similarity=0.446  Sum_probs=38.6

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcce
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA   56 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~   56 (115)
                      .|.|+|+|+|.++..  ..       .....|.|.++..+|+|.|+|.+.|..+..
T Consensus       133 ~p~i~W~k~g~~i~~--~~-------~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          133 DKTIKWLKDGSIISP--LN-------ATKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CSCEEEEETTEECCC--SS-------CCSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             CCeEEEEECCEECcc--cC-------CCcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            378999999998874  22       145678999999999999999999877654

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=2.5e-09  Score=57.18  Aligned_cols=36  Identities=39%  Similarity=0.602  Sum_probs=33.0

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ..|.|.++..+|.|.|+|.|.|..|.....+.|.|.
T Consensus        66 ~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~  101 (110)
T 2dm3_A           66 HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVA  101 (110)
T ss_dssp             EEEEESSCCGGGCSBBCEEEECSSCEEEECCEEEEE
T ss_pred             EEEEEeeCCcccCEEEEEEEECCCCEEEEEEEEEEe
Confidence            479999999999999999999999998888888875

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=98.86  E-value=2.6e-08  Score=60.58  Aligned_cols=21  Identities=10%  Similarity=0.241  Sum_probs=19.3

Q ss_pred             EEEecCCCCCCeEEEEEeecC
Q psy3272          32 LTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        32 l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      |.|.+++.+|+|.|.|.+.+.
T Consensus        76 L~I~~v~~~DsG~Y~C~~~~~   96 (253)
T 3to4_D           76 LRLQVANMSQGRTLYCTSSAD   96 (253)
T ss_dssp             CEEEEESCSSCEEEEEEEECS
T ss_pred             EEEccCChhhCeEEEEEEecC
Confidence            999999999999999999743

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=98.85  E-value=2.5e-08  Score=52.89  Aligned_cols=56  Identities=13%  Similarity=0.236  Sum_probs=38.9

Q ss_pred             cceEEEECCE-EeCCC-----CCCCEEEEE-eCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           2 GMMSWYQDTF-LIEPS-----VSDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         2 p~v~W~~~~~-~~~~~-----~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      |.|.|++++. .+...     ...++.+.. ......|.|.+++.+|+|.|.|.+.+ .+....
T Consensus        36 ~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n-~~~~~~   98 (108)
T 3m45_A           36 TSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFT-MPVKTS   98 (108)
T ss_dssp             CCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCEEEEEEECS-SSCEEE
T ss_pred             cEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCeEEEEEEEc-CCCcEE
Confidence            6899999775 22210     133555432 23577899999999999999999998 555444

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=98.85  E-value=9.5e-10  Score=56.27  Aligned_cols=39  Identities=15%  Similarity=0.411  Sum_probs=32.4

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecC-CCCCCeEEEEEeec
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNV-QSTDFGNYSCVADN   51 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~y~C~~~~   51 (115)
                      |.|+|+|+|.+++.  .         .+..|.|.++ ..+|+|.|.|.+..
T Consensus        27 P~i~W~kdg~~l~~--~---------~~~~L~I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E           27 ENLKWEKNGQELPQ--K---------HDKHLVLQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             SSCEEEETTEECTT--C---------CSSCCBCCSCCTTTTCSCEEEECSS
T ss_pred             CcEEEEECCEECcC--C---------CCCEEEECccCccCcCEEEEEEEcc
Confidence            56999999999876  2         3457999996 78999999999975

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=98.85  E-value=5.1e-08  Score=58.79  Aligned_cols=26  Identities=12%  Similarity=0.318  Sum_probs=23.0

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      .....|.|.+++.+|+|.|.|.+.+.
T Consensus        69 ~~~~~L~I~~v~~~D~G~Y~C~~~~~   94 (238)
T 1bec_A           69 QEQFSLILELATPSQTSVYFCASGGG   94 (238)
T ss_dssp             SSEEEEEESSCCGGGCEEEEEEEESC
T ss_pred             CCEEEEEEecCCcccCEEEEEEEecC
Confidence            34578999999999999999999875

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.84  E-value=2e-08  Score=63.76  Aligned_cols=60  Identities=17%  Similarity=0.259  Sum_probs=45.9

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEe-------CCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETR-------GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL   62 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v   62 (115)
                      .|.|+|+++|..+..  .........       .....|.|.+++.+|+|.|+|.+.|..|.....+.+
T Consensus       275 ~p~i~W~~~g~~l~~--~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  341 (347)
T 2ifg_A          275 APSLRWLFNGSVLNE--TSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA  341 (347)
T ss_dssp             CCEEEEEETTEECCC--CSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCcEEEEeCCEECCC--CcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEE
Confidence            478999999998875  444333221       136779999999999999999999999887775443

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=98.84  E-value=1.4e-09  Score=59.39  Aligned_cols=60  Identities=28%  Similarity=0.465  Sum_probs=44.7

Q ss_pred             cc-eEEEECCEEeCCCCCCCEEEE--EeCC--eEEEEEecCCCCCC-eEEEEEeecCCcceeEEEE
Q psy3272           2 GM-MSWYQDTFLIEPSVSDRRLME--TRGN--KHTLTIKNVQSTDF-GNYSCVADNNLGRAKKYME   61 (115)
Q Consensus         2 p~-v~W~~~~~~~~~~~~~~~~~~--~~~~--~~~l~i~~~~~~d~-G~y~C~~~~~~~~~~~~~~   61 (115)
                      |. |+|++++..+......++.+.  ....  ...|.|.++..+|. |.|.|.+.|..|.....+.
T Consensus        43 p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~~G~~~~~~~  108 (122)
T 2cry_A           43 PDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIR  108 (122)
T ss_dssp             CSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEEEEC
T ss_pred             CcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChhhCCceEEEEEECCCCeEEEEEE
Confidence            45 999999988874213555542  2233  56899999999999 9999999999988776443

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=98.83  E-value=3.6e-08  Score=52.25  Aligned_cols=37  Identities=19%  Similarity=0.348  Sum_probs=32.9

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ....|.|.++..+|+|.|+|.+.| .+..+..+.|.|.
T Consensus        69 ~~~~L~I~~v~~~D~G~Y~C~~~n-~~~~~~~~~L~V~  105 (108)
T 3m45_A           69 HELSISVSDVSLSDEGQYTCSLFT-MPVKTSKAYLTVL  105 (108)
T ss_dssp             SEEEEEECSCCGGGCEEEEEEECS-SSCEEEEEEEEEE
T ss_pred             CcEEEEECCCChhHCeEEEEEEEc-CCCcEEEEEEEEE
Confidence            467899999999999999999999 8888888888875

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=98.83  E-value=2.2e-08  Score=54.84  Aligned_cols=68  Identities=15%  Similarity=0.233  Sum_probs=43.7

Q ss_pred             cceEEEECCEEeCC------CCCCCEEEE-EeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEecccCCcE
Q psy3272           2 GMMSWYQDTFLIEP------SVSDRRLME-TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSVSVSDRR   70 (115)
Q Consensus         2 p~v~W~~~~~~~~~------~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g~~~~~~   70 (115)
                      |.|.|++++..+..      ....++.+. .......|.|.+++.+|+|.|.|.+.+. +....  .|.|.+.|....
T Consensus        31 ~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~-g~~~~~~~l~V~~~P~~~~  107 (124)
T 3rbg_A           31 SSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSD-SVSTKEVKVIVLATMKGEF  107 (124)
T ss_dssp             CEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEESS-SEEEEEEEEEEECC-----
T ss_pred             CEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEEcC-CCCcEEEEEEEEeCCCCCc
Confidence            68999986653210      014454443 2345689999999999999999999988 55555  566666554443

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=98.83  E-value=6.8e-08  Score=57.93  Aligned_cols=32  Identities=13%  Similarity=0.234  Sum_probs=25.8

Q ss_pred             EEEEeccCCCCCeeeEEEeecCccceeeEEEEE
Q psy3272          80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS  112 (115)
Q Consensus        80 ~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~  112 (115)
                      .|.|......| |.|+|.+.|..+.......|.
T Consensus       192 ~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~  223 (226)
T 3mlr_H          192 VVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVE  223 (226)
T ss_dssp             EEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECC
T ss_pred             EEEECHhHcCC-CeEEEEEEECCCCcCeEEEcc
Confidence            68888888888 999999999988766555443

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.83  E-value=9e-09  Score=55.79  Aligned_cols=52  Identities=23%  Similarity=0.277  Sum_probs=40.6

Q ss_pred             ecccCCcEEEEEeCC-------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 SVSVSDRRLMETRGN-------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~-------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .|.|.+.+.|.+++.             ...|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus        33 ~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~   97 (118)
T 2eo9_A           33 TGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQ   97 (118)
T ss_dssp             CCSSCCEEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEECSSCEEEEECCEEEE
T ss_pred             EecCCCEEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCCCcEEEEEEEEEE
Confidence            455566666665432             1269999999999999999999999998887777775

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.82  E-value=1.7e-08  Score=66.18  Aligned_cols=99  Identities=16%  Similarity=0.194  Sum_probs=56.1

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEe---cCCCCC---CeEEEEEeecCCcceeE--EE------------EE
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIK---NVQSTD---FGNYSCVADNNLGRAKK--YM------------EL   62 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d---~G~y~C~~~~~~~~~~~--~~------------~v   62 (115)
                      .|+|+|++.++..  ..... ........+.+.   .+...|   .|.|.|.+.+.......  .+            .+
T Consensus       284 ~i~W~k~~~~~~~--~~~~~-~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~  360 (457)
T 1hzh_H          284 KFNWYVDGVEVHN--AKTKP-REEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT  360 (457)
T ss_dssp             EEEEEETTEEECC--CEEEE-EEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEE
T ss_pred             EEEEEeCCccccc--ccccc-ceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEE
Confidence            8999999988754  21111 111111222222   133445   99999999965332211  11            11


Q ss_pred             -------------------ecccCC--cEEEEEeCCe--------------------EEEEEeccCCCCCeeeEEEeecC
Q psy3272          63 -------------------SVSVSD--RRLMETRGNK--------------------HTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        63 -------------------~g~~~~--~~~~~~~~~~--------------------~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                                         .|.+++  .+.|.+++..                    ..|.|.....+|.|.|+|.|.|.
T Consensus       361 ~~~~~~~~~~~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~  440 (457)
T 1hzh_H          361 LPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHE  440 (457)
T ss_dssp             ECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred             ECCCccccCCCcEEEEEEEEeEECCCCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEEC
Confidence                               444443  7888876521                    12444444456789999999998


Q ss_pred             ccc
Q psy3272         102 LGR  104 (115)
Q Consensus       102 ~~~  104 (115)
                      ...
T Consensus       441 ~l~  443 (457)
T 1hzh_H          441 ALH  443 (457)
T ss_dssp             TSG
T ss_pred             CCC
Confidence            755

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.81  E-value=1e-10  Score=76.16  Aligned_cols=102  Identities=12%  Similarity=0.135  Sum_probs=63.7

Q ss_pred             ceEEEECCEEeCCCCCCCEEEE---EeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--E------------EEE---
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLME---TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--Y------------MEL---   62 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~------------~~v---   62 (115)
                      .|+|+|++..+...........   .......|.|.++..+|.|.|.|.+.+..+....  .            +.+   
T Consensus       265 ~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~  344 (434)
T 1igy_B          265 QFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPP  344 (434)
T ss_dssp             CBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCCCEEECC
T ss_pred             EEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEeccCCCCcCCEEEEECC
Confidence            7999999977643100000000   0012356899999999999999999876553211  1            111   


Q ss_pred             ----------------ecccCC--cEEEEEeCCe--------------------EEEEEeccCCCCCeeeEEEeecCccc
Q psy3272          63 ----------------SVSVSD--RRLMETRGNK--------------------HTLTIKNVQSTDFGNYSCVADNNLGR  104 (115)
Q Consensus        63 ----------------~g~~~~--~~~~~~~~~~--------------------~~l~i~~~~~~d~G~y~C~~~n~~~~  104 (115)
                                      .|.+++  .+.|.+++..                    ..|.|.....+|.|.|+|.|.|....
T Consensus       345 ~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  424 (434)
T 1igy_B          345 PKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  424 (434)
T ss_dssp             CSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred             CHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCCC
Confidence                            454333  7888876521                    14566666667899999999998755

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=98.81  E-value=1.4e-08  Score=55.21  Aligned_cols=64  Identities=20%  Similarity=0.257  Sum_probs=41.8

Q ss_pred             cceEEEECCEEeCC----CCCCCEEEE--EeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEecc
Q psy3272           2 GMMSWYQDTFLIEP----SVSDRRLME--TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSVS   65 (115)
Q Consensus         2 p~v~W~~~~~~~~~----~~~~~~~~~--~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g~   65 (115)
                      |.|.|++++..+..    .........  .......|.|.+++.+|+|.|.|.+.+..+....  .|.|.+.
T Consensus        40 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~  111 (122)
T 3s35_X           40 IDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK  111 (122)
T ss_dssp             CEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEE
T ss_pred             EEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccCCCceEEEEEEEEecc
Confidence            47899998874321    001111110  0113568999999999999999999998887766  4555443

>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B

Probab=98.81  E-value=4e-08  Score=60.40  Aligned_cols=34  Identities=18%  Similarity=0.307  Sum_probs=25.9

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      .|+.+...  .....|+|.+++.+|+|.|.|.+.+.
T Consensus        65 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~  100 (263)
T 3iu4_H           65 SRLSISKDNSKSQVFLKMNSLQTDDTAMYYCARSGV  100 (263)
T ss_dssp             TCEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEC
T ss_pred             CCEEEEecCCCCEEEEEECCCCHHHCEEEEEEEEeC
Confidence            45554322  24567999999999999999999764

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=98.79  E-value=8.6e-08  Score=53.21  Aligned_cols=28  Identities=32%  Similarity=0.593  Sum_probs=25.4

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccce
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRA  105 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~  105 (115)
                      ...|.|.++..+|.|.|+|.|.|..|..
T Consensus        89 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~  116 (137)
T 3qr2_A           89 ASTISIDTLVEEDTGTYECRASNDPDRN  116 (137)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECCTTSS
T ss_pred             ceEEEECCCCcccCEEEEEEEEecCCcc
Confidence            3589999999999999999999998874

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=98.79  E-value=2e-08  Score=54.23  Aligned_cols=57  Identities=26%  Similarity=0.348  Sum_probs=35.9

Q ss_pred             CcceEEEECCEEeCCCCC-CCEEEEEeCCeEEEEE-----ecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVS-DRRLMETRGNKHTLTI-----KNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~l~i-----~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+|++..+..... .+....... ...+.+     .+++.+|+|.|.|.+.|..|...+
T Consensus        38 ~p~v~W~k~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~v~~~D~G~Y~C~a~N~~G~~~s  100 (117)
T 2v9t_A           38 TPTIEWYKGGERVETDKDDPRSHRMLLP-SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVS  100 (117)
T ss_dssp             CCEEEEEETTEECCCTTTCSSCSEEECT-TSCEEESSCCCBTTBCSSCEEEEEEEEETTEEEEC
T ss_pred             CCeEEEEECCEeccccCCCCcceeEEec-CCcEEEEEEEeCCCCcCcCEEEEEEEEeCccceEe
Confidence            378999999998865211 111111111 122222     255789999999999999888765

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=98.79  E-value=1.7e-08  Score=58.16  Aligned_cols=55  Identities=16%  Similarity=0.205  Sum_probs=40.9

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEEeccc
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMELSVSV   66 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v~g~~   66 (115)
                      |.+.|+++|..+..  ..        ....|.|.++..+|+|.|.|.+.+..+...+   .|.|.+.|
T Consensus       116 ~~~~W~~~g~~~~~--~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p  173 (176)
T 1f2q_A          116 YKVIYYKDGEALKY--WY--------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP  173 (176)
T ss_dssp             EEEEEEETTEECCS--CC--------CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSC
T ss_pred             eEEEEEECCEEEee--ec--------CCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCC
Confidence            58999999998865  21        3568999999999999999999986443332   45555444

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.78  E-value=9.1e-08  Score=57.53  Aligned_cols=25  Identities=24%  Similarity=0.364  Sum_probs=22.3

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecC
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      ....|.|.+++.+|+|.|.|.+.+.
T Consensus        77 ~~~~L~I~~v~~~D~G~Y~C~~~~~  101 (230)
T 1ypz_F           77 STSILTIYSLEEEDEAIYYCSYGEG  101 (230)
T ss_dssp             TEEEEEECSCCGGGCSEEEEEECCT
T ss_pred             CEEEEEECcCChhhCEEEEEEEECC
Confidence            4568999999999999999999863

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=98.78  E-value=1.1e-08  Score=64.75  Aligned_cols=47  Identities=13%  Similarity=0.163  Sum_probs=31.5

Q ss_pred             cceEEEECCEEeCCC-------CCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272           2 GMMSWYQDTFLIEPS-------VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG   54 (115)
Q Consensus         2 p~v~W~~~~~~~~~~-------~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~   54 (115)
                      |.|+|+|++..+...       ....+.     ....|.|..+..+| |.|.|.+.+..+
T Consensus       152 ~~v~W~k~g~~~~~~~~~~~~~~~~~~~-----~~s~L~i~~~~~~d-G~Y~C~a~n~~~  205 (344)
T 1za6_B          152 VTVSWNSGALTSGVHTFPAVLQSSGLYS-----LSSVVTVPSSSLGT-QTYICNVNHKPS  205 (344)
T ss_dssp             CCEEETTTTBCTTEEECCCEECTTSCEE-----EEEEEEEETTHHHH-BCEEEEEEEGGG
T ss_pred             eEEEEecCCccCceeECCCeECCCCCEE-----EEEEEEEcHHHcCC-CcEEEEEEeCCC
Confidence            589999998753210       011121     13478898888777 999999987654

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.77  E-value=5.9e-08  Score=62.45  Aligned_cols=102  Identities=11%  Similarity=0.108  Sum_probs=61.8

Q ss_pred             ceEEEECCEEeCCCC---CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--E------------EEE---
Q psy3272           3 MMSWYQDTFLIEPSV---SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--Y------------MEL---   62 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~------------~~v---   62 (115)
                      .|+|+|++..+....   ..+...........|.|..+..+|.|.|.|.+.+.......  .            +.+   
T Consensus       203 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~  282 (376)
T 2aty_A          203 QFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPP  282 (376)
T ss_pred             EEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCCceEEEEcCCCCCCcCCeEEeeCC
Confidence            699999986653210   00000001113457999999999999999999876442111  1            111   


Q ss_pred             ----------------ecc-c-CCcEEEEEeCCe--------------------EEEEEeccCCCCCeeeEEEeecCccc
Q psy3272          63 ----------------SVS-V-SDRRLMETRGNK--------------------HTLTIKNVQSTDFGNYSCVADNNLGR  104 (115)
Q Consensus        63 ----------------~g~-~-~~~~~~~~~~~~--------------------~~l~i~~~~~~d~G~y~C~~~n~~~~  104 (115)
                                      .|. | ...+.|.+++..                    ..|.|......|.|.|+|.+.|....
T Consensus       283 ~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l~  362 (376)
T 2aty_A          283 PKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  362 (376)
T ss_pred             CHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCCC
Confidence                            343 2 347788776521                    13555555556789999999998754

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=98.76  E-value=3.1e-08  Score=58.05  Aligned_cols=52  Identities=10%  Similarity=0.050  Sum_probs=32.6

Q ss_pred             CcceEEEECCEEeCCCCCCC-EE-EEEeCCeEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272           1 MGMMSWYQDTFLIEPSVSDR-RL-METRGNKHTLTIKNVQSTDFGNYSCVADNNLG   54 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~-~~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~   54 (115)
                      .|.++|+|+|..+..  ... +. .........|.|.+++.+|+|.|.|.+.+...
T Consensus       128 ~~~v~W~k~g~~~~~--~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          128 FDGFILCKEGEDEHP--QCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             CSEEEEEEC--------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             CcEEEEEECCCccCC--ccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCC
Confidence            378999999987643  211 00 11122358899999999999999999998754

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.75  E-value=8.1e-09  Score=59.81  Aligned_cols=55  Identities=11%  Similarity=0.076  Sum_probs=41.9

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEecccC
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSVSVS   67 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g~~~   67 (115)
                      .|.++|++++..+..            ....|.|.++..+|+|.|.|.+.+..+....  .+.|.+.|.
T Consensus       126 ~~~v~W~~~~~~~~~------------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~  182 (184)
T 2ny1_B          126 SPSVQCRSPRGKNIQ------------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK  182 (184)
T ss_dssp             CCEEEEECTTSCEEE------------ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC
T ss_pred             CCEEEEEeCCCcccc------------CceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCC
Confidence            378999998754422            3567999999999999999999987776666  555566554

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=98.75  E-value=2.9e-08  Score=57.54  Aligned_cols=52  Identities=35%  Similarity=0.541  Sum_probs=41.7

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      |.+.|++++..+..  ..++..   .....|.|.++..+|.|.|.|.+.|..+...+
T Consensus       130 ~~v~W~~~~~~~~~--~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s  181 (192)
T 2iep_A          130 PSVSWIKGDSALRE--NSRIAV---LESGSLRIHNVQKEDAGQYRCVAKNSLGTAYS  181 (192)
T ss_dssp             CEEEEEETTEECCC--CSSEEE---CTTSCEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             ceEEEEeCCEEccC--CCcEEE---ecCCcEEEecCChhhCEEEEEEEEcCCCcEEE
Confidence            68999999998876  555433   23457999999999999999999998876643

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=98.75  E-value=5.2e-08  Score=50.71  Aligned_cols=36  Identities=22%  Similarity=0.334  Sum_probs=32.8

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ..|.|.++..+|+|.|+|.+.|..|.....+.|.|.
T Consensus        51 ~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~   86 (95)
T 4hwu_A           51 EYLQIKGATPRDSGLYACTAARTVDSETWIFMVNVT   86 (95)
T ss_dssp             TEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CEEEECcCCcccCEEEEEEEccCCCcEEEEEEEEEe
Confidence            379999999999999999999999998888888875

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=98.74  E-value=6.7e-08  Score=57.12  Aligned_cols=55  Identities=29%  Similarity=0.499  Sum_probs=41.3

Q ss_pred             CcceEEEECCEEeCCC------CCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPS------VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~------~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.+.|++++..+...      ...++...   ....|.|.++..+|.|.|.|.+.|..|....
T Consensus       138 ~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~  198 (217)
T 2vr9_A          138 EPTLIWIKDGVPLDDLKAMSFGASSRVRIV---DGGNLLISNVEPIDEGNYKCIAQNLVGTRES  198 (217)
T ss_dssp             CCEEEEEETTEEECCCCCC---CCCSEEEE---TTTEEEESSCCSTTCEEEEEEEEETTEEEEC
T ss_pred             CCeEEEEECCcCCCcccccccccCCcEEec---CCCcEEEeeCCHHHCeEEEEEEEcccceecc
Confidence            3689999999988731      02222221   3347999999999999999999998887765

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=98.74  E-value=2.5e-07  Score=55.32  Aligned_cols=49  Identities=14%  Similarity=0.215  Sum_probs=36.0

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|++.+..+     .+..  .......|.|.+++.+|+|.|.|.+.+..+....
T Consensus        39 ~i~W~~~~~~l-----~~~~--~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~   87 (210)
T 1gsm_A           39 SVQWRGLDTSL-----GAVQ--SDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQH   87 (210)
T ss_dssp             EEEEESSTTTT-----CCEE--EESSEEEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             ceEEeeccccc-----CcEE--ecCCccEEEECccCcccCceEEEEEEeCCCceEE
Confidence            89999854322     1111  2356788999999999999999999987766544

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=98.74  E-value=4.7e-08  Score=54.86  Aligned_cols=62  Identities=15%  Similarity=0.251  Sum_probs=42.1

Q ss_pred             cceEEEE---------CCEEeCCCCCCCEEEE-EeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEecccC
Q psy3272           2 GMMSWYQ---------DTFLIEPSVSDRRLME-TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSVSVS   67 (115)
Q Consensus         2 p~v~W~~---------~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g~~~   67 (115)
                      |.|.|++         ++..+ .  ..++... .......|.|.+++.+|+|.|.|.+.+. +....  .|.|...|.
T Consensus        68 ~~i~W~~~~~~~i~~~~~~~~-~--~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~-~~~~~~~~L~V~~~P~  141 (145)
T 1z9m_A           68 SSLQWSNPAQQTLYFGEKRAL-R--DNRIQLVTSTPHELSISISNVALADEGEYTCSIFTM-PVRTAKSLVTVLGIPQ  141 (145)
T ss_dssp             CCEEEECTTCCEEEETTEECS-C--CTTEEEEEECSSEEEEEECSCCGGGCEEEEEEECSS-SCEEEEEEEEEECCCC
T ss_pred             cEEEEECCCCcEEEECCceec-c--cCCEEEecCCCCeEEEEECCCChhhCEEEEEEEEcC-CCceEEEEEEEEeCCC
Confidence            6799994         33322 2  3455432 2344678999999999999999999988 55544  556655443

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.73  E-value=2.6e-08  Score=58.04  Aligned_cols=52  Identities=25%  Similarity=0.354  Sum_probs=41.4

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|++++..+..  ..+    .......|.|.++..+|.|.|.|.+.|..+....
T Consensus       142 ~p~v~W~~~~~~~~~--~~~----~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  193 (201)
T 3s97_C          142 VPDIRWRKVLEPMPS--TAE----ISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKH  193 (201)
T ss_dssp             CCEEEEEETTBCCCT--TCE----EETTTTEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCceEEEeCCCcCCC--cee----ecCCCCEEEEccCChhhCEEEEEEEEecCCceee
Confidence            368999999987764  322    2234668999999999999999999998887766

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=98.72  E-value=1.2e-07  Score=57.63  Aligned_cols=25  Identities=20%  Similarity=0.396  Sum_probs=22.0

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecC
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      ....|.|.+++.+|+|.|.|.+.+.
T Consensus        74 ~~~~L~I~~v~~~D~G~Y~C~~~~~   98 (252)
T 1oga_E           74 ESFPLTVTSAQKNPTAFYLCASSSR   98 (252)
T ss_dssp             TBCCEEECSCCSCCCEEEEEEEESS
T ss_pred             CEEEEEECcCChhhCEEEEEEEecC
Confidence            3568999999999999999999764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.72  E-value=2.9e-08  Score=63.53  Aligned_cols=59  Identities=19%  Similarity=0.117  Sum_probs=42.3

Q ss_pred             CcceEEEECCEEeCCC--CCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEe
Q psy3272           1 MGMMSWYQDTFLIEPS--VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELS   63 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~   63 (115)
                      .|.|+|++++..+...  ...++.+    ....|.|.+++.+|+|.|+|.+.+..+....  .+.|.
T Consensus       274 ~p~i~W~~~~~~~~~~~~~~~r~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~  336 (361)
T 2xot_A          274 GMTKVWVSPSNEQVLSQGSNGSVSV----RNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVY  336 (361)
T ss_dssp             TCEEEEECTTSCBCCSCCSSSSEEE----ETTEEEESSCCTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CCeEEEEeCCCeeEeecccCCceEe----ecCeEEEeecCcccCEEEEEEEecCCCccEEEEEEEEE
Confidence            3789999977654321  1224444    2446999999999999999999998877766  44443

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=98.72  E-value=1.1e-07  Score=50.41  Aligned_cols=35  Identities=31%  Similarity=0.523  Sum_probs=30.9

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccc-eeeEEEEEE
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGR-AKKYMELSE  113 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~-~~~~~~l~v  113 (115)
                      ..|.|.++..+|.|.|+|.|.|..|. .+..+.|.|
T Consensus        76 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           76 TILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             eEEEEeccccccCCeEEEEEEeCCCcEEEeEEEEEe
Confidence            58999999999999999999999998 456777766

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=98.69  E-value=7.4e-08  Score=56.90  Aligned_cols=57  Identities=25%  Similarity=0.489  Sum_probs=43.6

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEEe
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMELS   63 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v~   63 (115)
                      |.|.|++++..+... ..++...    ...|.|.++..+|.|.|.|.+.|..|...+   .|.|.
T Consensus       140 p~i~W~~~~~~~~~~-~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~  199 (212)
T 2yd1_A          140 PNIYWIKNQTKVDMS-NPRYSLK----DGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVK  199 (212)
T ss_dssp             CEEEEEETTEECCTT-STTEEEE----TTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CeEEEEECCeEcccC-CCeEEcc----CCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEE
Confidence            689999999988751 2333322    348999999999999999999999887754   55554

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=98.69  E-value=1.4e-07  Score=51.62  Aligned_cols=39  Identities=26%  Similarity=0.420  Sum_probs=33.9

Q ss_pred             eCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          75 RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        75 ~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ......|.|.+++.+|+|.|+|.+.|. +.....+.|.|.
T Consensus        62 ~~~~~~L~I~~v~~~DsG~Y~C~a~n~-g~~~~~~~l~V~  100 (124)
T 3rbg_A           62 SANQLSITVPNVTLQDEGVYKCLHYSD-SVSTKEVKVIVL  100 (124)
T ss_dssp             ETTEEEEEESSCCGGGCEEEEEEEESS-SEEEEEEEEEEE
T ss_pred             CCCEEEEEECCCChHHCEEEEEEEEcC-CCCcEEEEEEEE
Confidence            334678999999999999999999999 888888888875

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=98.68  E-value=2.4e-07  Score=54.85  Aligned_cols=52  Identities=25%  Similarity=0.316  Sum_probs=42.0

Q ss_pred             ecccCCcEEEEEeC-----------------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 SVSVSDRRLMETRG-----------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ~g~~~~~~~~~~~~-----------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .|.|.+.+.|.+++                 ....|.|.++..+|.|.|+|.|.|..|.....+.|.|.
T Consensus        43 ~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  111 (215)
T 3mtr_A           43 FAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQA  111 (215)
T ss_dssp             EEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             eecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCceEEEEEEEEC
Confidence            56666666666543                 34689999999999999999999999998888887764

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=98.68  E-value=5.3e-08  Score=57.92  Aligned_cols=52  Identities=13%  Similarity=0.324  Sum_probs=41.0

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEEe
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMELS   63 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v~   63 (115)
                      .|.+.|++++..+..  .         ....|.|.++..+|.|.|.|.+.+..+...+   .|.|.
T Consensus       147 ~~~v~W~~~~~~~~~--~---------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  201 (218)
T 3k0w_A          147 IPHYQWFKNELPLTH--E---------TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID  201 (218)
T ss_dssp             CCEEEEEETTEECTT--C---------CSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEC
T ss_pred             CCeEEEEECCEECCC--C---------CCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEe
Confidence            368999999998876  2         2457999999999999999999997766443   45553

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=98.68  E-value=2.9e-08  Score=58.31  Aligned_cols=54  Identities=24%  Similarity=0.471  Sum_probs=39.7

Q ss_pred             CcceEEEECCE-EeCCCCCCC-------EEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcce
Q psy3272           1 MGMMSWYQDTF-LIEPSVSDR-------RLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA   56 (115)
Q Consensus         1 ~p~v~W~~~~~-~~~~~~~~~-------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~   56 (115)
                      .|.+.|++++. .+..  ...       ...........|.|.++..+|.|.|.|.+.|..+..
T Consensus       134 ~~~i~W~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  195 (212)
T 1f97_A          134 PSEYSWFKDGISMLTA--DAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTA  195 (212)
T ss_dssp             CCEEEEEETTEESBC-------CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCC
T ss_pred             CCEEEEEeCCcccccc--cccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCc
Confidence            36899999998 7765  221       111223456789999999999999999999988777

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.67  E-value=2.9e-08  Score=51.85  Aligned_cols=52  Identities=21%  Similarity=0.312  Sum_probs=40.3

Q ss_pred             ecccCCcEEEEEeCC------eEEEEEeccCCCCCeeeEEEeecCccc--eeeEEEEEEe
Q psy3272          63 SVSVSDRRLMETRGN------KHTLTIKNVQSTDFGNYSCVADNNLGR--AKKYMELSEL  114 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~------~~~l~i~~~~~~d~G~y~C~~~n~~~~--~~~~~~l~v~  114 (115)
                      .|.|.+.+.|.+++.      ...|.|.++..+|.|.|+|.+.|..+.  .+..+.|.|.
T Consensus        35 ~g~p~~~v~W~k~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~~~v~V~   94 (96)
T 2ens_A           35 PAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISII   94 (96)
T ss_dssp             SSCSSCCCCCEESSSBCSSCCCSEEEEESCCTTTCEEEECEECCSSCCCEECCCEEEEEC
T ss_pred             ccCCCCEEEEEECCEECcCCCCCEEEECCCCcccCEEEEEEEEeCCCCcEEEEEEEEEEe
Confidence            566777888887653      458999999999999999999997554  4446666664

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.67  E-value=8.7e-08  Score=49.13  Aligned_cols=39  Identities=26%  Similarity=0.484  Sum_probs=29.0

Q ss_pred             EEEeCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          72 METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        72 ~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ...++....|.|.++..+|+|.|+|.|.|.    +..+.|.|.
T Consensus        44 ~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~----~~~a~l~V~   82 (84)
T 2lu7_A           44 LEQAGARQVLRVQGARSGDAGEYLCDAPQD----SRIFLVSVE   82 (84)
T ss_dssp             EEECSSCEEEEESSCSSTTCEEEEEECTTT----CEEEEEEEC
T ss_pred             EeecCCeEEEEecCCCCcccEEEEEEECCE----EEEEEEEEE
Confidence            333444568999999999999999998664    455566664

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=98.66  E-value=6.1e-08  Score=56.17  Aligned_cols=53  Identities=17%  Similarity=0.208  Sum_probs=39.5

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcce
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA   56 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~   56 (115)
                      .|.+.|++++..+......++..   .....|.|.++..+|+|.|.|.+.+..+..
T Consensus       129 ~~~v~W~~~~~~~~~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  181 (191)
T 1epf_A          129 PPTIIWKHKGRDVILKKDVRFIV---LSNNYLQIRGIKKTDEGTYRCEGRILARGE  181 (191)
T ss_dssp             CCEEEEEETTEEGGGGCCTTEEE---CTTSCEEETTCCGGGCEEEEEEEEEGGGTE
T ss_pred             CCEEEEEECCEEeeccCCceEEE---ecCCeEEECCCChhhCEEEEEEEEEeccee
Confidence            36899999999886422334333   234479999999999999999999876433

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.66  E-value=5.1e-08  Score=59.12  Aligned_cols=25  Identities=36%  Similarity=0.666  Sum_probs=22.7

Q ss_pred             EEEEeccCCCCCeeeEEEeecCccc
Q psy3272          80 TLTIKNVQSTDFGNYSCVADNNLGR  104 (115)
Q Consensus        80 ~l~i~~~~~~d~G~y~C~~~n~~~~  104 (115)
                      .|.|.++..+|.|.|+|.+.|..+.
T Consensus       114 ~L~I~~v~~~D~G~Y~C~a~n~~~~  138 (254)
T 2c1o_A          114 TLKISRVEAEDLGIYYCVQGSHFPP  138 (254)
T ss_dssp             EEEESSCCGGGCSEEEEEECSSSSC
T ss_pred             EEEECcCCcccCEEEEEEEEcCcce
Confidence            7999999999999999999998653

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=98.66  E-value=1.1e-07  Score=55.76  Aligned_cols=59  Identities=22%  Similarity=0.409  Sum_probs=43.6

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEEec
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMELSV   64 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v~g   64 (115)
                      .|.+.|++++..+... ..++..    ....|.|.++..+|.|.|.|.+.|..+...+   .|.|..
T Consensus       141 ~~~v~W~~~~~~l~~~-~~~~~~----~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~  202 (212)
T 2v9r_A          141 EPTISWKKDGSPLDDK-DERITI----RGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLE  202 (212)
T ss_dssp             CCEEEEEETTEEECTT-STTEEE----ETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CCEEEEEECCccCCCC-cceEEc----cCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEe
Confidence            3689999999988752 223332    2357999999999999999999998876543   455543

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=98.66  E-value=8.8e-09  Score=56.17  Aligned_cols=37  Identities=38%  Similarity=0.579  Sum_probs=32.8

Q ss_pred             eEEEEEeccCCCCC-eeeEEEeecCccceeeEEEEEEe
Q psy3272          78 KHTLTIKNVQSTDF-GNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        78 ~~~l~i~~~~~~d~-G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ...|.|.++..+|. |.|+|.|.|..|.....+.|.|.
T Consensus        75 ~~~L~I~~v~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~  112 (122)
T 2cry_A           75 ISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ  112 (122)
T ss_dssp             EEEEECTTCCHHHHHSCEEEEEECSSCEEEEEECCCCS
T ss_pred             EEEEEEcCCChhhCCceEEEEEECCCCeEEEEEEEEEC
Confidence            34799999999999 99999999999998888887764

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=98.65  E-value=4.1e-08  Score=56.02  Aligned_cols=46  Identities=15%  Similarity=0.224  Sum_probs=37.3

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCccee
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK   57 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~   57 (115)
                      |.+.|++++..+..  .        .....|.|.++..+|+|.|.|.+.+..+...
T Consensus       116 ~~~~W~~~g~~~~~--~--------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  161 (170)
T 3ry4_A          116 VKVTFFQNGKSQKF--S--------HLDPTFSIPQANHSHSGDYHCTGNIGYTLFS  161 (170)
T ss_dssp             EEEEEEETTEEEEE--E--------SSCCEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             ceEEEEECCeEccc--c--------CCCCeEEEEeccccCCEEEEEEEEeCcCccc
Confidence            57999999987754  1        2356799999999999999999999876533

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.65  E-value=2.5e-08  Score=59.03  Aligned_cols=52  Identities=15%  Similarity=0.330  Sum_probs=39.0

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecC-CCCCCeEEEEEeecCCcce
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNV-QSTDFGNYSCVADNNLGRA   56 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~y~C~~~~~~~~~   56 (115)
                      |.|+|+|++..+......+... .  ....|.|.++ +.+|+|.|+|.+.|..+..
T Consensus       141 p~i~W~k~~~~l~~~~~~~~~~-~--~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~  193 (204)
T 1sy6_A          141 SEILWQHNDKNIGGDEDDKNIG-S--DEDHLSLKEFSELEQSGYYVCYPRGSKPED  193 (204)
T ss_dssp             SCEEEEETTEEESCCTTCTTEE-E--ETTEEEETTCCHHHHCEEEEEEETTSCGGG
T ss_pred             CceEEEECCEECCCccCCceEe-c--CCCEEEEeeCCccccCEEEEEEeccCCCCc
Confidence            6899999999886521111111 1  2568999999 9999999999999988763

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=98.64  E-value=2e-07  Score=51.81  Aligned_cols=64  Identities=22%  Similarity=0.348  Sum_probs=42.3

Q ss_pred             cceEEEEC--CEE---eCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcc------eeEEEEEeccc
Q psy3272           2 GMMSWYQD--TFL---IEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR------AKKYMELSVSV   66 (115)
Q Consensus         2 p~v~W~~~--~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~------~~~~~~v~g~~   66 (115)
                      |.|.|||+  +..   +.. ...++..........|+|.+++.+|+|.|.|.+.+..+.      ....|.|.+.|
T Consensus        45 ~~v~W~r~~~g~~~~~l~~-~~~r~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~g~gt~L~V~~~p  119 (133)
T 3khq_A           45 GALTWFRKRGSQQPQELVS-EEGRIVQTQNGSVYTLTIQNIQYEDNGIYFCKQKCDSANHNVTDSCGTELLVLGFS  119 (133)
T ss_dssp             SCEEEEEECTTSCCEECCC-TTTTEEEEEETTEEEEEECSCCGGGCEEEEEEESSCC-------CCCEEEEEC---
T ss_pred             CEEEEEEeCCCCCCEEEEE-eCCCEEEEcCCCEEEEEECCCChHHCEEEEEEEEeCCCCcceeECCCEEEEEEecc
Confidence            57899997  322   111 156777665566788999999999999999999876531      11256666543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.64  E-value=3.7e-08  Score=64.92  Aligned_cols=55  Identities=22%  Similarity=0.306  Sum_probs=39.4

Q ss_pred             CcceEEEECCEEeCCC-CCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPS-VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+|++..+... ...++..   .....|.|.+++.+|+|.|+|.+.+..|....
T Consensus       414 ~p~i~W~~~~~~~~~~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~  469 (477)
T 2id5_A          414 PPAILWLSPRKHLVSAKSNGRLTV---FPDGTLEVRYAQVQDNGTYLCIAANAGGNDSM  469 (477)
T ss_dssp             CCEEEEECTTSCBC-------CEE---CTTSCEEESSCCSTTCEEEEEEEEETTEEEEE
T ss_pred             CCEEEEEECCccccccCCCceEEe---CCCCEEEEeeCChHHCEEEEEEEEeCCCcEEE
Confidence            4789999998766531 0222222   23457999999999999999999999887766

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=98.64  E-value=3.2e-08  Score=54.95  Aligned_cols=57  Identities=21%  Similarity=0.375  Sum_probs=38.7

Q ss_pred             CcceEEEECCEEeCCCC--------CCCEEEEE---eCCeEEEEEecCCCCCCeEEEEEeecCCccee
Q psy3272           1 MGMMSWYQDTFLIEPSV--------SDRRLMET---RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK   57 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~--------~~~~~~~~---~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~   57 (115)
                      .|.|.|++++..+....        ..++....   ......|.|.++..+|+|.|.|.+.|..+...
T Consensus        50 ~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~  117 (137)
T 3qr2_A           50 VPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNH  117 (137)
T ss_dssp             CCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSCCGGGCEEEEEEEECCTTSSS
T ss_pred             CCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCCCcccCEEEEEEEEecCCccc
Confidence            37899999876543200        11222211   11357899999999999999999999876653

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=98.63  E-value=3.5e-08  Score=60.01  Aligned_cols=102  Identities=19%  Similarity=0.189  Sum_probs=57.5

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEE---eCCeEEEEEecCCCCCCeEEEEEeecCCcce--eEE------------EEE---
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMET---RGNKHTLTIKNVQSTDFGNYSCVADNNLGRA--KKY------------MEL---   62 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~--~~~------------~~v---   62 (115)
                      .|+|+|+|..+............   ....+.|.|.....+|.|.|.|.+.+.....  ...            +.+   
T Consensus        59 ~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~  138 (240)
T 4acp_A           59 KFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPP  138 (240)
T ss_dssp             EEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECC
T ss_pred             EEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECC
Confidence            69999999987541000000000   0113567777666677899999999765421  111            111   


Q ss_pred             ----------------ec-ccCC-cEEEEEeCCe--------------------EEEEEeccCCCCCeeeEEEeecCccc
Q psy3272          63 ----------------SV-SVSD-RRLMETRGNK--------------------HTLTIKNVQSTDFGNYSCVADNNLGR  104 (115)
Q Consensus        63 ----------------~g-~~~~-~~~~~~~~~~--------------------~~l~i~~~~~~d~G~y~C~~~n~~~~  104 (115)
                                      .| .|.+ .+.|..++..                    ..|.|......+.|.|+|.+.+..-.
T Consensus       139 ~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l~  218 (240)
T 4acp_A          139 SRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  218 (240)
T ss_dssp             CGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             ChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCCC
Confidence                            33 4443 6788775421                    23444444445688999999998753

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.63  E-value=1.6e-08  Score=59.36  Aligned_cols=56  Identities=9%  Similarity=0.044  Sum_probs=38.9

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEE-EeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLME-TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|++++..+..  ....... .....+.|.|..+..+|.|.|+|.+.|..+....
T Consensus       147 ~p~i~W~~~~~~~~~--~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~  203 (218)
T 4frw_A          147 APSVTWDTEVKGTTS--SRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQ  203 (218)
T ss_dssp             CCEEEEEESSCCEEE--EEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCE
T ss_pred             CceEEEEECCccccc--CceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEE
Confidence            378999999876643  1111100 0012457999999999999999999998776654

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=98.63  E-value=2e-08  Score=58.14  Aligned_cols=44  Identities=14%  Similarity=0.153  Sum_probs=34.8

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      |.|+|+|+|.++..  ..+           +.|..+..+|.|.|.|.+.|..+...+
T Consensus       125 p~i~W~~~g~~l~~--~~~-----------~~i~~~~~~d~G~Y~C~a~N~~g~~~~  168 (176)
T 1hng_A          125 VELKLYQGKEHLRS--LRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESE  168 (176)
T ss_dssp             CEEEEEETTEEEEE--ESS-----------SEEEEECSCCSSCEEEEEEETTEEEEE
T ss_pred             cEEEEEECCEECCC--CCc-----------EEEEEEEccCCeEEEEEEEecCCCcee
Confidence            78999999998865  222           344467789999999999998887765

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=98.62  E-value=2.8e-07  Score=49.32  Aligned_cols=58  Identities=19%  Similarity=0.242  Sum_probs=38.2

Q ss_pred             CcceEEEECC----EEeCCCCCCCEEEE--EeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDT----FLIEPSVSDRRLME--TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~----~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|.|-+    .+++...+-+....  .......|.|.++...|+|.|+|.+.+..+...+
T Consensus        44 rPnVtWcK~~~~~c~~L~~~~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn~~~g~ieS  107 (122)
T 1xau_A           44 RPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQVINS  107 (122)
T ss_dssp             CCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CCcEEEEecCCeeccccccceeeecceeccCCceeEEEEEeeEEEcCCccEEEEeeCCCCceee
Confidence            4899999965    34432111000000  0113568999999999999999999998777666

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.62  E-value=1.7e-07  Score=49.47  Aligned_cols=71  Identities=18%  Similarity=0.131  Sum_probs=44.4

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecc---cCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVS---VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ..+.-.+.|.+ ......  ...-+|.   +..++.+..++....|.|.++..+|+|.|+|.|.|.  ..+..+.|.|.
T Consensus        21 ~G~~v~l~C~v-~p~p~v--~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~~~~~a~L~V~   94 (100)
T 2yuz_A           21 LGKEICLKCEI-SENIPG--KWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY--NVTLPAKVHVI   94 (100)
T ss_dssp             TTSCCCEEEEC-SSCCCE--EEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS--CCCEEEEEEEE
T ss_pred             CCCCEEEEEEe-CCCCeE--EEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC--CeeEEEEEEEe
Confidence            34455678877 322111  1222232   223445555556678999999999999999999998  44455566664

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=98.62  E-value=3.4e-08  Score=58.46  Aligned_cols=55  Identities=11%  Similarity=0.111  Sum_probs=39.6

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEEeccc
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMELSVSV   66 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v~g~~   66 (115)
                      |.++|+|+|..+..  .        .....|.|.++..+|+|.|+|.+.|..+...+   .|.|.+.+
T Consensus       119 ~~v~W~k~g~~~~~--~--------~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~  176 (204)
T 3sgj_C          119 HKVTYLQNGKGRKY--F--------HHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGL  176 (204)
T ss_dssp             EEEEEEETTEEEEE--E--------EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             ceEEEEECCcEeec--c--------cCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcC
Confidence            57999999987653  1        12467999999999999999999985433332   56666544

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=98.61  E-value=3e-08  Score=57.05  Aligned_cols=44  Identities=14%  Similarity=0.107  Sum_probs=35.5

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcc
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR   55 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   55 (115)
                      |.+.|+|+|..+..  .        .....|.|.+++.+|+|.|.|.+.|..+.
T Consensus       119 ~~~~W~k~g~~~~~--~--------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~  162 (175)
T 1fnl_A          119 HKVTYLQNGKDRKY--F--------HHNSDFHIPKATLKDSGSYFCRGLVGSKN  162 (175)
T ss_dssp             EEEEEEETTEEEEE--E--------EECCCEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             eEEEEEECCeEccC--C--------CCCCEEEEcccChhhCeEEEEEEEcCCCC
Confidence            48999999987753  1        13567999999999999999999986544

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=98.60  E-value=8.2e-07  Score=47.27  Aligned_cols=52  Identities=29%  Similarity=0.549  Sum_probs=36.6

Q ss_pred             cceEEEECC--E---EeC-------CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           2 GMMSWYQDT--F---LIE-------PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~~~--~---~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      |.|.|||..  .   .+.       .....++..........|+|.+++.+|+|.|.|.+.+..
T Consensus        31 ~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~   94 (108)
T 1jhl_L           31 KSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYICQQHNEY   94 (108)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEEEEECSSS
T ss_pred             ceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence            689999953  1   111       011356665544556789999999999999999998753

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.60  E-value=6.8e-08  Score=63.22  Aligned_cols=65  Identities=20%  Similarity=0.358  Sum_probs=42.5

Q ss_pred             CcceEEEECCE-EeCCC-CCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEecccCC
Q psy3272           1 MGMMSWYQDTF-LIEPS-VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSVSVSD   68 (115)
Q Consensus         1 ~p~v~W~~~~~-~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g~~~~   68 (115)
                      .|.|+|++++. .+... ...++..   .....|.|.+++.+|+|.|+|.+.|..|....  .+.|.+.|.+
T Consensus       369 ~p~i~W~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~v~~~~~~  437 (440)
T 3zyj_A          369 LTSVSWITPNGTVMTHGAYKVRIAV---LSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHH  437 (440)
T ss_dssp             TSEEEEECTTSCEEESSSCCSSEEE---CTTCCEEESSCCSTTCEEEEEEEECSSCEEEEEEEEEEC-----
T ss_pred             CCceEEEeCCCceeeccCCCceEEE---ccCCeEEEccCChhhCEEEEEEEEcCCCcEEEEEEEEEeccccc
Confidence            47899999544 33321 1223332   23456999999999999999999999988877  5555555443

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.60  E-value=1.4e-06  Score=58.12  Aligned_cols=52  Identities=8%  Similarity=0.034  Sum_probs=33.3

Q ss_pred             ceEEEECCEEeCCC-CCCCEEEE---EeCCeEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272           3 MMSWYQDTFLIEPS-VSDRRLME---TRGNKHTLTIKNVQSTDFGNYSCVADNNLG   54 (115)
Q Consensus         3 ~v~W~~~~~~~~~~-~~~~~~~~---~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~   54 (115)
                      .|+|+|+|..+... ........   .....+.|.|.....+|.|.|.|.+.+...
T Consensus       330 ~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~  385 (512)
T 1zvo_C          330 HLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSL  385 (512)
T ss_pred             EEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCC
Confidence            79999999876521 00111000   001135689988888999999999987643

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.59  E-value=1.5e-06  Score=58.04  Aligned_cols=34  Identities=21%  Similarity=0.439  Sum_probs=25.8

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      .|+.+...  .....|.|.+++.+|+|.|.|.+.+.
T Consensus        67 ~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~  102 (512)
T 1zvo_C           67 GRVTISVDTSRNQFSLNLRSMSAADTAMYYCARGNP  102 (512)
T ss_pred             CceEEEecCCCCEEEEEECcCCHHHCEEEEEEEECC
Confidence            45554322  23578999999999999999999764

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=98.59  E-value=7.6e-07  Score=52.54  Aligned_cols=63  Identities=21%  Similarity=0.202  Sum_probs=46.3

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEE------------eCCeEEEEEeccCCCCCeeeEEEeecCcccee
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMET------------RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK  106 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~------------~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~  106 (115)
                      ..+.-...|.+             .|.|.|.+.|..            .+....|.|.+++.+|.|.|.|.|.|..+..+
T Consensus        15 ~G~~v~L~C~~-------------~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~   81 (202)
T 1vca_A           15 IGDSVSLTCST-------------TGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLE   81 (202)
T ss_dssp             TTSCEEEEEEE-------------ESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEE
T ss_pred             CCCcEEEEEee-------------cCCCCCeEEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEe
Confidence            34455677776             445555555544            22345799999999999999999999998877


Q ss_pred             eEEEEEEe
Q psy3272         107 KYMELSEL  114 (115)
Q Consensus       107 ~~~~l~v~  114 (115)
                      ..+.|.|.
T Consensus        82 ~~~~l~V~   89 (202)
T 1vca_A           82 KGIQVEIY   89 (202)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEE
Confidence            78878774

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=98.57  E-value=4.1e-07  Score=47.38  Aligned_cols=71  Identities=18%  Similarity=0.078  Sum_probs=45.6

Q ss_pred             CCCCCeEEEEEeecCCcceeEEEEEecc---cCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          38 QSTDFGNYSCVADNNLGRAKKYMELSVS---VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ...+.-.+.|.+.....  .....-+|.   +.+++.+..++....|.|.++..+|+|.|+|.|.|..    ....|.|.
T Consensus        18 ~~G~~v~l~C~v~~~~~--~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~~----~sa~L~V~   91 (93)
T 1waa_A           18 FVGETAHFEIELSEPDV--HGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTK----SAANLKVK   91 (93)
T ss_dssp             ETTSCEEEEEEESSSSC--CCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTEE----EEEEEEEE
T ss_pred             eCCCCEEEEEEECCCCC--eEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCCc----EEEEEEEE
Confidence            35566778888753221  112222332   2334555556667789999999999999999999853    45556654

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=98.57  E-value=3.1e-07  Score=54.45  Aligned_cols=45  Identities=20%  Similarity=0.196  Sum_probs=37.3

Q ss_pred             EEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          70 RLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        70 ~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      +..........|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus        60 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~  104 (203)
T 4fa8_A           60 FDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV  104 (203)
T ss_dssp             EEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEcCCEEEEEEccCCHHHCeEEEEEEEcCCCcEEEEEEEEec
Confidence            334445566789999999999999999999999998888887764

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.56  E-value=8.8e-08  Score=56.79  Aligned_cols=58  Identities=22%  Similarity=0.305  Sum_probs=39.5

Q ss_pred             ceEEEECCEEeCCCCCCC-EEEEE-------eCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE
Q psy3272           3 MMSWYQDTFLIEPSVSDR-RLMET-------RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL   62 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~-~~~~~-------~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v   62 (115)
                      .|.|++++..+..  ... .....       ......|.|.+++.+|+|.|.|.+.|..+....  .|.|
T Consensus       138 ~i~W~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V  205 (213)
T 2x1w_L          138 DFNWEYPSSKHQH--KKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV  205 (213)
T ss_dssp             EEEEECSCSSCCS--EEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEEEecCCccce--EEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEE
Confidence            6899998875432  110 00000       112457999999999999999999998887766  4444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.56  E-value=1.6e-07  Score=61.97  Aligned_cols=53  Identities=23%  Similarity=0.234  Sum_probs=45.6

Q ss_pred             ecccCCcEEEEEeCC---------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEeC
Q psy3272          63 SVSVSDRRLMETRGN---------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE  115 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~---------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~~  115 (115)
                      .|.|.|.+.|.+.+.               ...|.|.++..+|+|.|+|.|.|..|..+..+.|.|.+
T Consensus       410 ~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  477 (477)
T 2id5_A          410 DGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS  477 (477)
T ss_dssp             EEESCCEEEEECTTSCBC-------CEECTTSCEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             cccCCCEEEEEECCccccccCCCceEEeCCCCEEEEeeCChHHCEEEEEEEEeCCCcEEEEEEEEEeC
Confidence            788999999987542               23699999999999999999999999999999888863

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.55  E-value=4.9e-07  Score=46.99  Aligned_cols=62  Identities=21%  Similarity=0.309  Sum_probs=38.9

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecc---cCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVS---VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      ..+.-.+.|.+......  ....-+|.   +..++.+..++....|.|.++..+|+|.|+|.|.|..
T Consensus        20 ~g~~v~l~C~v~~p~~~--v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   84 (91)
T 2lvc_A           20 TSECVMLACEVDREDAP--VRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDEC   84 (91)
T ss_dssp             TTCCEEEEEECSCTTSC--CEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSCE
T ss_pred             CCCcEEEEEEECCCCcE--EEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcceE
Confidence            45566788886432111  12222332   2234444555566789999999999999999997753

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.55  E-value=2e-07  Score=56.06  Aligned_cols=53  Identities=19%  Similarity=0.332  Sum_probs=36.6

Q ss_pred             CcceEEEECCEEeCCCCCCCEE--E-------------------EEeCCeEEEEEecCCCCCCeEEEEEeecCCcc
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRL--M-------------------ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR   55 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~--~-------------------~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   55 (115)
                      .|.|+|+|++..+..  .....  .                   ........|.|.++..+|+|.|.|.+.|..+.
T Consensus       165 ~p~v~W~k~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~  238 (250)
T 2fbo_J          165 NANVTWYTGPTFFEN--YETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGE  238 (250)
T ss_dssp             TCEEEEEEEEECSSC--SSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSG
T ss_pred             CCeeEEEeCCCcccc--cccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccc
Confidence            368999999887754  21100  0                   00012368999999999999999999995543

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=98.55  E-value=5.9e-07  Score=60.92  Aligned_cols=56  Identities=25%  Similarity=0.306  Sum_probs=47.0

Q ss_pred             EEEEecccCCcEEEEEeC---------------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          59 YMELSVSVSDRRLMETRG---------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        59 ~~~v~g~~~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ...|.|.|.|.+.|.+++               ....|.|.++...|+|.|+|.|.|..|..+..+.|.|.
T Consensus       503 ~~~v~g~P~P~v~W~k~~~el~~s~~~~i~~~~~~~~L~I~~~~~~D~G~Yt~~A~N~~G~~~~~v~l~Vt  573 (573)
T 3uto_A          503 YCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT  573 (573)
T ss_dssp             EEEEECSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEccCCCeEEEEECCEEcccCCcEEEEEcCCEEEEEEcCCCcccCcEEEEEEEeCCCcEEEEEEEEEC
Confidence            344578888888887644               34589999999999999999999999999999999873

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=98.55  E-value=9.5e-08  Score=55.87  Aligned_cols=51  Identities=10%  Similarity=0.133  Sum_probs=37.0

Q ss_pred             cceEEEECCEEeCCCCCCC-EEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272           2 GMMSWYQDTFLIEPSVSDR-RLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG   54 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~   54 (115)
                      +.+.|+|++..+..  ... ...........|.|.+++.+|+|.|.|.+.|..+
T Consensus       128 ~~~~w~k~g~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          128 DTFLLCKERAAHPL--LCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EEEEEEETTCCCGG--GSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             CEEEEEeCCCcccc--eeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            46899999986654  221 1111223467899999999999999999998654

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=98.52  E-value=3.6e-07  Score=53.15  Aligned_cols=47  Identities=21%  Similarity=0.451  Sum_probs=37.3

Q ss_pred             c-ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCccee
Q psy3272           2 G-MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK   57 (115)
Q Consensus         2 p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~   57 (115)
                      | .|.|++++..+..  ....     .....|.|.++.  |+|.|.|.+.|..+...
T Consensus       136 p~~v~W~~~~~~~~~--~~~~-----~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~  183 (195)
T 2c5d_C          136 PVDLLWLQDAVPLAT--APGH-----GPQRSLHVPGLN--KTSSFSCEAHNAKGVTT  183 (195)
T ss_dssp             CCEEEEEESSCBSSS--STTS-----SCCEEEEECCCS--SCEEEEEEEEETTEEEE
T ss_pred             CCEEEEEECCEeccC--CCCc-----CCCCeEEEcccc--cCceEEEEEEcCCCceE
Confidence            5 7999999998876  3321     356789998886  78999999999887774

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=98.52  E-value=1.1e-07  Score=56.75  Aligned_cols=61  Identities=11%  Similarity=0.089  Sum_probs=32.2

Q ss_pred             CcceEEEECCEE-eCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE
Q psy3272           1 MGMMSWYQDTFL-IEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL   62 (115)
Q Consensus         1 ~p~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v   62 (115)
                      .|.|+|+|++.. ++.. ..............+.+..+..+|.|.|+|.+.|..+.......|
T Consensus       148 ~p~i~W~k~~~~~~~~~-~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v  209 (226)
T 4f80_A          148 QPQIQWSNNKGENIPTV-EAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASI  209 (226)
T ss_dssp             CCEEEEECTTSCBCCCE-ECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEECCceEcCCC-ceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEE
Confidence            478999996543 3320 111111101112334455677899999999999998877764333

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=98.52  E-value=1.2e-07  Score=52.13  Aligned_cols=36  Identities=33%  Similarity=0.550  Sum_probs=33.7

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      ...|.|.+++.+|+|.|+|.+.|..+..+..+.|+|
T Consensus        83 ~~sL~I~~v~~~D~G~Y~C~v~~~~g~~~~~v~LkV  118 (125)
T 4gos_A           83 NASLRLKNVQLTDAGTYKCYIITSKGKGNANLEYKT  118 (125)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eEEEEECCCChHHCEEEEEEEEeCCCeEEEEEEEEE
Confidence            457999999999999999999999999999999987

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=98.50  E-value=4.2e-08  Score=57.45  Aligned_cols=53  Identities=21%  Similarity=0.478  Sum_probs=39.5

Q ss_pred             cceEEEECCEEeCCCCCCCE-------EEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcce
Q psy3272           2 GMMSWYQDTFLIEPSVSDRR-------LMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA   56 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~   56 (115)
                      |.|.|++++..+..  ....       ..........|.|.++..+|.|.|.|.+.|..+..
T Consensus       138 ~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  197 (209)
T 1nbq_A          138 SEYTWFKDGIVMPT--NPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP  197 (209)
T ss_dssp             CEEEEEETTCCCCS--CSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCC
T ss_pred             ceeEEEECCeeCCC--ccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcc
Confidence            68999999987765  2210       00011245789999999999999999999988776

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.49  E-value=4.3e-07  Score=54.40  Aligned_cols=67  Identities=21%  Similarity=0.331  Sum_probs=42.6

Q ss_pred             cceEEEE----CCEEeCCCCCCCEEEEE------eCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEecccCC
Q psy3272           2 GMMSWYQ----DTFLIEPSVSDRRLMET------RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSVSVSD   68 (115)
Q Consensus         2 p~v~W~~----~~~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g~~~~   68 (115)
                      |.+.|++    ++..+............      ......|.|.++..+|.|.|.|.+.|..+....  .|.|.+.|.+
T Consensus       144 p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~  222 (241)
T 3grw_A          144 PHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAA  222 (241)
T ss_dssp             CEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC------
T ss_pred             CEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCC
Confidence            6899999    77766542111111110      113567999999999999999999998888877  4555554443

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=98.48  E-value=3.1e-06  Score=45.32  Aligned_cols=37  Identities=22%  Similarity=0.318  Sum_probs=30.2

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceee-EEEEEEe
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKK-YMELSEL  114 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~-~~~l~v~  114 (115)
                      .+.|.|.++...|+|.|+|.|.|..|..++ ...|.|.
T Consensus        78 ~fiL~f~~V~~sDsG~YrCsAn~~~g~ieSHs~ti~V~  115 (122)
T 1xau_A           78 VFVLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHVR  115 (122)
T ss_dssp             EEEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             eEEEEEeeEEEcCCccEEEEeeCCCCceeeeEEEEEEE
Confidence            458999999999999999999999888555 4455554

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=98.47  E-value=4e-07  Score=49.10  Aligned_cols=27  Identities=22%  Similarity=0.197  Sum_probs=23.7

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNLG   54 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~   54 (115)
                      ...+|.|.+++.+|+|.|+|.+.+..+
T Consensus        70 ~ngSL~I~nvt~~D~G~Ytc~v~~~~~   96 (111)
T 2qsq_A           70 PNASLLIQNIIQNDAGFYTLHVIKSDL   96 (111)
T ss_dssp             TTSCEEECSCCGGGCEEEEEEEEETTS
T ss_pred             cCCcEEEccCcccCCeEEEEEEEeCCC
Confidence            456899999999999999999987654

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=98.47  E-value=1.9e-07  Score=50.37  Aligned_cols=62  Identities=24%  Similarity=0.268  Sum_probs=41.2

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCCe-----------------EEEEEe-----ccCCCCCeeeEE
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGNK-----------------HTLTIK-----NVQSTDFGNYSC   96 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~-----------------~~l~i~-----~~~~~d~G~y~C   96 (115)
                      ..+.-...|.+             .|.|.|.+.|.+++..                 ..+.+.     ++..+|.|.|+|
T Consensus        23 ~G~~v~L~C~~-------------~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y~C   89 (117)
T 2v9t_A           23 KGEPATLNCKA-------------EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVC   89 (117)
T ss_dssp             TTCCEEECCEE-------------EEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEEEEE
T ss_pred             CCCcEEEEEEC-------------CccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEEEEE
Confidence            34455666665             6777888888765411                 112233     457899999999


Q ss_pred             EeecCccceee-EEEEEE
Q psy3272          97 VADNNLGRAKK-YMELSE  113 (115)
Q Consensus        97 ~~~n~~~~~~~-~~~l~v  113 (115)
                      .|.|..|.... .+.|.+
T Consensus        90 ~a~N~~G~~~s~~~~l~~  107 (117)
T 2v9t_A           90 VARNYLGEAVSHDASLEV  107 (117)
T ss_dssp             EEEETTEEEECCCEEEEE
T ss_pred             EEEeCccceEeeeEEEEh
Confidence            99999998544 555554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.47  E-value=1.7e-07  Score=61.60  Aligned_cols=61  Identities=23%  Similarity=0.394  Sum_probs=41.8

Q ss_pred             CcceEEEECC-EEeCCC-CCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE--EEEec
Q psy3272           1 MGMMSWYQDT-FLIEPS-VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY--MELSV   64 (115)
Q Consensus         1 ~p~v~W~~~~-~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~--~~v~g   64 (115)
                      .|.|+|++++ ..+... ...++..   .....|.|.+++.+|+|.|+|.+.|..|.....  +.|.+
T Consensus       379 ~p~i~W~~~~~~~~~~~~~~~~~~~---~~~g~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~  443 (452)
T 3zyi_A          379 MSSVKWLLPNGTVLSHASRHPRISV---LNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVST  443 (452)
T ss_dssp             TSEEEEECTTSCEECSSCCCSSCEE---CTTSCEECSSCCTTCCEEEEEEEECSSCEEEEEEEEEC--
T ss_pred             CCcEEEEeCCCcEeccCCCCCCEEE---CCCCeEEEeecCHHHCEEEEEEEEcCCCcEEEEEEEEEEc
Confidence            4789999954 444431 1223322   234569999999999999999999999888774  44433

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=98.46  E-value=2e-06  Score=48.13  Aligned_cols=36  Identities=22%  Similarity=0.283  Sum_probs=32.2

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ...|.|.++..+|+|.|+|.+.|. +.....+.|.|.
T Consensus       102 ~~~L~I~~v~~~DsG~Y~C~~~n~-~~~~~~~~L~V~  137 (145)
T 1z9m_A          102 ELSISISNVALADEGEYTCSIFTM-PVRTAKSLVTVL  137 (145)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECSS-SCEEEEEEEEEE
T ss_pred             eEEEEECCCChhhCEEEEEEEEcC-CCceEEEEEEEE
Confidence            568999999999999999999999 888888888775

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=98.44  E-value=1.7e-06  Score=44.86  Aligned_cols=43  Identities=35%  Similarity=0.628  Sum_probs=33.0

Q ss_pred             cEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEeC
Q psy3272          69 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE  115 (115)
Q Consensus        69 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~~  115 (115)
                      ++....++....|.|.++..+|.|.|+|.+    |.....+.|.|.+
T Consensus        53 ~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----g~~~~~~~l~V~e   95 (95)
T 2k1m_A           53 KYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKVIE   95 (95)
T ss_dssp             TCEEEEETTEEEEEESSCCTTCCSEEEEEE----TTEEEEEEEEEEC
T ss_pred             cEEEEEcCCEEEEEEcCCCcccCEEEEEEE----CCceEEEEEEEeC
Confidence            444455556678999999999999999999    4455667777764

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.44  E-value=1.9e-06  Score=51.97  Aligned_cols=35  Identities=26%  Similarity=0.294  Sum_probs=27.4

Q ss_pred             CCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272          18 SDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        18 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      ..|+.+..  ......|.|.+++.+|+|.|.|.+.+.
T Consensus        61 ~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~   97 (229)
T 1hxm_A           61 KDNFQGDIDIAKNLAVLKILAPSERDEGSYYCACDTL   97 (229)
T ss_dssp             TTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECC
T ss_pred             CCeEEEEEcCCCCEEEEEECcCCHhHCeEEEEEEecC
Confidence            35666543  245678999999999999999999764

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=98.44  E-value=2.1e-07  Score=54.60  Aligned_cols=55  Identities=20%  Similarity=0.321  Sum_probs=38.9

Q ss_pred             cceEEEECCE--EeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE
Q psy3272           2 GMMSWYQDTF--LIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL   62 (115)
Q Consensus         2 p~v~W~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v   62 (115)
                      |.|+|++++.  .+..  ...    .......|.|.++..+|+|.|.|.+.|..+.....+.+
T Consensus       152 ~~v~W~~~~~~~~~~~--~~~----~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l  208 (214)
T 3jz7_A          152 LQFEWQKLSDSQTMPT--PWL----AEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRL  208 (214)
T ss_dssp             CEEEEEECSTTCCCCG--GGG----GGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             CEEEEEECCCCCccCc--cce----eccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEE
Confidence            6899999543  3332  111    11234589999999999999999999998877664433

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=98.44  E-value=5.3e-08  Score=57.02  Aligned_cols=50  Identities=6%  Similarity=-0.114  Sum_probs=32.5

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      |.++|+|++..+..  ........  ......|.|.+++.+|+|.|.|.+.+..
T Consensus       128 ~~~~W~k~g~~~~~--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  179 (196)
T 2d3v_A          128 DRFILTEEGDHKLS--WTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRH  179 (196)
T ss_dssp             SEEEEEEC---CCE--EEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETT
T ss_pred             CEEEEEccCCcccc--cccccccccCCCceeEEEeeecCcccCeeEEEEEEccC
Confidence            67999999987643  11000000  1124789999999999999999999865

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.43  E-value=4.1e-07  Score=59.57  Aligned_cols=51  Identities=24%  Similarity=0.314  Sum_probs=41.8

Q ss_pred             cccCCcEEEEEeCC----------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          64 VSVSDRRLMETRGN----------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        64 g~~~~~~~~~~~~~----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      +.|.|.+.|...+.                ...|.|.+++.+|+|.|+|.|.|..|..+..+.+.|.
T Consensus       366 ~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~v~  432 (440)
T 3zyj_A          366 STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVT  432 (440)
T ss_dssp             SSTTSEEEEECTTSCEEESSSCCSSEEECTTCCEEESSCCSTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CCCCCceEEEeCCCceeeccCCCceEEEccCCeEEEccCChhhCEEEEEEEEcCCCcEEEEEEEEEe
Confidence            45677778875321                2469999999999999999999999999999888875

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=98.43  E-value=6.2e-07  Score=48.44  Aligned_cols=30  Identities=30%  Similarity=0.620  Sum_probs=25.1

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      ...|.|.+++.+|+|.|.|.+.+..+....
T Consensus        88 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~  117 (126)
T 1eaj_A           88 DASINVTNLQLSDIGTYQCKVKKAPGVANK  117 (126)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             eEEEEECcCChHHCeEEEEEEEcCCccCCc
Confidence            367999999999999999999987655444

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=98.43  E-value=7.5e-07  Score=51.18  Aligned_cols=45  Identities=27%  Similarity=0.384  Sum_probs=35.9

Q ss_pred             c-ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCccee
Q psy3272           2 G-MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK   57 (115)
Q Consensus         2 p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~   57 (115)
                      | .+.|++++..+..  ..       .....|.|.++  +|+|.|.|.+.|..+...
T Consensus       128 p~~v~W~~~~~~~~~--~~-------~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~  173 (182)
T 1rhf_A          128 PVTIVWWRGTTKIGG--PA-------PSPSVLNVTGV--TQSTMFSCEAHNLKGLAS  173 (182)
T ss_dssp             CCEEEEEETTEECSC--SE-------ESSEEEEECCC--SSCEEEEEEEEETTEEEE
T ss_pred             CCEEEEEcCCeECCC--CC-------CCceEEEEecc--ccCeEEEEEEECCCCCcc
Confidence            5 7999999998865  21       15678888887  589999999999887764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.42  E-value=8.6e-07  Score=56.73  Aligned_cols=51  Identities=24%  Similarity=0.221  Sum_probs=42.6

Q ss_pred             ecccCCcEEEEEeCC---------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 SVSVSDRRLMETRGN---------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~---------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .| |.|.+.|.+.+.               ...|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus       271 ~g-p~p~i~W~~~~~~~~~~~~~~~r~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~  336 (361)
T 2xot_A          271 KQ-QGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVY  336 (361)
T ss_dssp             SS-TTCEEEEECTTSCBCCSCCSSSSEEEETTEEEESSCCTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             eC-CCCeEEEEeCCCeeEeecccCCceEeecCeEEEeecCcccCEEEEEEEecCCCccEEEEEEEEE
Confidence            56 788888877432               1379999999999999999999999999888888874

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=98.42  E-value=2.9e-07  Score=53.40  Aligned_cols=46  Identities=15%  Similarity=0.247  Sum_probs=35.4

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      |.+.|+|+|..+..  ....    ......|.|.+++.+|+|.|.|.+.+..
T Consensus       122 ~~~~w~k~g~~~~~--~~~~----~~~~~~L~i~~v~~~D~G~Y~C~a~n~~  167 (184)
T 2gi7_A          122 DQFALYKEGDPAPY--KNPE----RWYRASFPIITVTAAHSGTYRCYSFSSR  167 (184)
T ss_dssp             CEEEEEECCCCTTS--CCCC----EEEEESSSEEEETTCCSEEEEEEEECTT
T ss_pred             cEEEEEECCCcCcc--eecC----CCceEEEEEccCCccCCeEEEEEEEeCC
Confidence            57899999987654  2221    1235678999999999999999999865

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.41  E-value=1e-06  Score=51.52  Aligned_cols=58  Identities=9%  Similarity=0.166  Sum_probs=36.4

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCC-e--EEEEEecCCCCCCeEEEEEeecCCcceeEEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGN-K--HTLTIKNVQSTDFGNYSCVADNNLGRAKKYME   61 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~-~--~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~   61 (115)
                      .|.|+|+++|..+..  ..... ..... +  ....+..+..+|.|.|+|.+.|..+.....+.
T Consensus       136 ~p~i~W~k~g~~l~~--~~~~~-~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~  196 (201)
T 1dr9_A          136 EPHLSWLENGEELNA--INTTV-SQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFN  196 (201)
T ss_dssp             CEEEEEEESSCEECC--SEEEE-EECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEE
T ss_pred             CCEEEEEECCEECcc--ccceE-EecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEe
Confidence            378999999988875  32211 11111 1  11123344568999999999998887766443

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.41  E-value=2.8e-07  Score=53.63  Aligned_cols=46  Identities=13%  Similarity=0.165  Sum_probs=35.0

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      |.+.|+|+|..+..  .    .........|.|.+++.+|+|.|.|.+.+..
T Consensus       127 ~~~~w~k~g~~~~~--~----~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          127 SMFLLLKEGRSSHV--Q----RGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             SEEEEEEESSSCEE--E----EEECSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred             CEEEEEECCccccc--c----ccCCCceeEEEECCCCcCCCcEEEEEEEcCC
Confidence            57899999865542  1    1123457889999999999999999998653

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=98.41  E-value=1.9e-06  Score=45.94  Aligned_cols=51  Identities=29%  Similarity=0.523  Sum_probs=36.1

Q ss_pred             cceEEEECC--E---EeC-------CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           2 GMMSWYQDT--F---LIE-------PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         2 p~v~W~~~~--~---~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      |.|.|||..  .   .+.       .....++..........|+|.+++.+|+|.|.|.+.+.
T Consensus        33 ~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   95 (109)
T 2q20_A           33 NYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDN   95 (109)
T ss_dssp             TCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccCCEEEEEECCCChhhCEEEEEEEeeC
Confidence            579999853  1   111       00135666554556778999999999999999999764

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.41  E-value=1.1e-06  Score=52.95  Aligned_cols=52  Identities=29%  Similarity=0.492  Sum_probs=36.3

Q ss_pred             cceEEEE--CCEEeC----------CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           2 GMMSWYQ--DTFLIE----------PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~--~~~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      |.|.|+|  ++..+.          .....++..........|.|.+++.+|+|.|.|.+.+..
T Consensus       165 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~  228 (247)
T 2ghw_B          165 SNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNW  228 (247)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSS
T ss_pred             ceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCC
Confidence            6899999  554331          101345554334456789999999999999999998743

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=98.40  E-value=1.5e-06  Score=48.18  Aligned_cols=35  Identities=26%  Similarity=0.453  Sum_probs=28.2

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEe
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELS   63 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~   63 (115)
                      ...|.|.+++.+|+|.|.|.+.+..+....  .|.|.
T Consensus        84 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  120 (139)
T 1pko_A           84 KVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE  120 (139)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEEEEccCCHHHCEEEEEEEEcCCCceEEEEEEEEe
Confidence            578999999999999999999987665444  45554

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.39  E-value=1.4e-06  Score=51.59  Aligned_cols=52  Identities=23%  Similarity=0.388  Sum_probs=41.5

Q ss_pred             ecccCCcEEEEEeCC----------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 SVSVSDRRLMETRGN----------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .|.|.+.+.|.+++.                ...|.|.++..+|.|.|+|.+.|..+.....+.|.|.
T Consensus        44 ~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~  111 (231)
T 3ojm_B           44 GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV  111 (231)
T ss_dssp             EEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcccccEEEEEE
Confidence            566777788877542                1269999999999999999999999987777777664

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.38  E-value=2.4e-06  Score=52.10  Aligned_cols=51  Identities=27%  Similarity=0.481  Sum_probs=37.0

Q ss_pred             cceEEEE--CCEEeC----------CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           2 GMMSWYQ--DTFLIE----------PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         2 p~v~W~~--~~~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      |.|.|+|  ++..+.          .....++..........|.|.++..+|+|.|.|.+.+.
T Consensus       156 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  218 (256)
T 1nqb_A          156 TYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSH  218 (256)
T ss_dssp             BCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             eEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccC
Confidence            4899999  555331          00134555544556778999999999999999999874

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.38  E-value=8.7e-07  Score=46.92  Aligned_cols=37  Identities=30%  Similarity=0.411  Sum_probs=28.4

Q ss_pred             cEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccce
Q psy3272          69 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA  105 (115)
Q Consensus        69 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~  105 (115)
                      ++.+..++....|.|.++..+|.|.|+|.+.|.....
T Consensus        53 ~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~   89 (106)
T 2dlt_A           53 RITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSL   89 (106)
T ss_dssp             SCEEEEETTEEEEEESSCCTTTCSCEEEEEETSCCCC
T ss_pred             CEEEEEeCCEEEEEECCCCcCCCEEEEEEEccCCceE
Confidence            3344444556689999999999999999999984333

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=98.38  E-value=5.5e-07  Score=49.19  Aligned_cols=38  Identities=24%  Similarity=0.446  Sum_probs=31.4

Q ss_pred             eEEEEEeccCCCCCeeeEEEeec-CccceeeEEEEEEeC
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADN-NLGRAKKYMELSELE  115 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n-~~~~~~~~~~l~v~~  115 (115)
                      ...|.|.+++.+|+|.|.|.+.+ +.|.....+.|.|+|
T Consensus        79 ~~sL~I~~v~~~DsG~Y~C~v~t~~~g~~~~~~~L~VlE  117 (123)
T 4gjt_B           79 DGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLE  117 (123)
T ss_dssp             BCCEEEESCCSSSCSEEEEEEEESSSCEEEEEEEEEC--
T ss_pred             EEEEEECCCChHHCEEEEEEEEECCCCeEEeEEEEEEEE
Confidence            45799999999999999998875 577778888998875

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=2.6e-06  Score=44.73  Aligned_cols=71  Identities=15%  Similarity=0.150  Sum_probs=43.2

Q ss_pred             CCCCCeEEEEEeecCCcceeEEEEEeccc---CCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          38 QSTDFGNYSCVADNNLGRAKKYMELSVSV---SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ...+.-...|.+......  ....-.|.+   ..++....++....|.|.++..+|+|.|+|.+.|.    ...+.|.|.
T Consensus        21 ~~G~~v~l~C~~~~~~~~--v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~----~~~~~l~V~   94 (103)
T 2edf_A           21 APGEDVELRCELSRAGTP--VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEAS----KSTASLHVE   94 (103)
T ss_dssp             CTTSCEEECCEESSSSCC--CCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSSC----EEEEEEEEC
T ss_pred             cCCCCEEEEEEEeCCCCc--EEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEccC----CcEEEEEEe
Confidence            345556777887531111  111112211   22444445555678999999999999999999992    445556553

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=98.37  E-value=8.5e-07  Score=51.90  Aligned_cols=45  Identities=16%  Similarity=0.226  Sum_probs=32.2

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCC-CCeEEEEEeecCCcceeEE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQST-DFGNYSCVADNNLGRAKKY   59 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~G~y~C~~~~~~~~~~~~   59 (115)
                      |.|+|+++|..+..  .           ..|.|.....+ |.|.|+|.+.|..+.....
T Consensus       140 p~i~W~~~g~~l~~--~-----------~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~  185 (193)
T 2if7_A          140 VSFRWEALGNTLSS--Q-----------PNLTVSWDPRISSEQDYTCIAENAVSNLSFS  185 (193)
T ss_dssp             CEEEEEETTEEEES--S-----------SEEEEEECTTTCSCCEEEEEEEETTEEEEEE
T ss_pred             eEEEEEeCCEEcCC--C-----------CeEEEEeccCcCCCCcEEEEEECCCCccccc
Confidence            68999999987654  1           23555444444 8999999999988776543

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=98.37  E-value=1.4e-06  Score=60.30  Aligned_cols=103  Identities=14%  Similarity=0.153  Sum_probs=64.0

Q ss_pred             cceE-EE--ECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcc-eeE--EEEEeccc---------
Q psy3272           2 GMMS-WY--QDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR-AKK--YMELSVSV---------   66 (115)
Q Consensus         2 p~v~-W~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~-~~~--~~~v~g~~---------   66 (115)
                      |.|. |+  ++|..+..  .....+........|.|.++...|.|.|.|.+.|..+. ...  .+.|...|         
T Consensus       194 p~i~~W~~~~~g~~l~~--~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~~  271 (731)
T 2v5y_A          194 AGDRLWLQGIDVRDAPL--KEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLA  271 (731)
T ss_dssp             TTCEEEEEESSSCCEEE--EEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSCCEEE
T ss_pred             CceeEEEecCCCccccc--cceEEeccccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCCccee
Confidence            5677 88  56765543  11111100112468999999999999999999998876 333  45552211         


Q ss_pred             ---------------------CCcEEEEE--e---------CCeEEEEEeccCCCCCeeeEEEee--cCcccee
Q psy3272          67 ---------------------SDRRLMET--R---------GNKHTLTIKNVQSTDFGNYSCVAD--NNLGRAK  106 (115)
Q Consensus        67 ---------------------~~~~~~~~--~---------~~~~~l~i~~~~~~d~G~y~C~~~--n~~~~~~  106 (115)
                                           ...+.+..  .         .....+.|.++...+.+.|+|.|.  |..|...
T Consensus       272 ~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~  345 (731)
T 2v5y_A          272 SVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGS  345 (731)
T ss_dssp             EECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSCEEEEECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCC
T ss_pred             ccCCceEEEEeCCcccCCCCccEEEEEEEEECCCCceEEeccCcceEEEeCCCCCCEEEEEEEEEecCCCcccc
Confidence                                 11111111  1         112367888888888889999999  9888643

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=98.36  E-value=7.1e-07  Score=47.82  Aligned_cols=29  Identities=24%  Similarity=0.456  Sum_probs=24.0

Q ss_pred             eEEEEEecCCCCCCeEEEEEeec-CCccee
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADN-NLGRAK   57 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~-~~~~~~   57 (115)
                      ...|+|.+++.+|+|.|.|.+.+ ..+...
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~  107 (118)
T 3udw_C           78 NASLRMFGLRVEDEGNYTCLFVTFPQGSRS  107 (118)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEEETTEEEE
T ss_pred             CcEEEEeecChHHCeEEEEEEEECCCCCcc
Confidence            56899999999999999999987 444333

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.36  E-value=3e-06  Score=44.60  Aligned_cols=42  Identities=26%  Similarity=0.376  Sum_probs=31.9

Q ss_pred             cEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          69 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        69 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ++.+..++....|.|.++..+|+|.|+|.+.|    ....+.|.|.
T Consensus        54 ~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~~~l~V~   95 (103)
T 1x44_A           54 RYRIRVEGKKHILIIEGATKADAAEYSVMTTG----GQSSAKLSVD   95 (103)
T ss_dssp             SEEEEEETTEEEEEEEEECTTTCSEEEEEETT----EEEEEEEEEE
T ss_pred             EEEEEEcCCEEEEEECCCCcccCEEEEEEECC----CcEEEEEEEe
Confidence            44555566667899999999999999999998    3445555554

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=98.35  E-value=3.5e-06  Score=44.77  Aligned_cols=51  Identities=33%  Similarity=0.565  Sum_probs=36.1

Q ss_pred             cceEEEECC--EE---eC-------CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           2 GMMSWYQDT--FL---IE-------PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         2 p~v~W~~~~--~~---~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      +.|.|||..  ..   +.       .....++..........|+|.+++.+|+|.|.|.+.+.
T Consensus        31 ~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   93 (107)
T 1i8k_A           31 DDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYYCLQSFN   93 (107)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEeeC
Confidence            579999853  21   11       00135666554556678999999999999999999764

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=98.34  E-value=1.7e-06  Score=47.05  Aligned_cols=51  Identities=25%  Similarity=0.513  Sum_probs=36.2

Q ss_pred             cceEEEECC--EE---eC-------CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           2 GMMSWYQDT--FL---IE-------PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         2 p~v~W~~~~--~~---~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      +.|.|||..  ..   +.       .....|+..........|+|.+++.+|+|.|.|.+.+.
T Consensus        31 ~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   93 (120)
T 1mqk_L           31 SYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYYCQHHYG   93 (120)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             ceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEeccCCEEEEEECCCCHHHCEEEEEEEEeC
Confidence            579999953  21   11       00145666554556778999999999999999999864

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=98.33  E-value=7.3e-07  Score=47.67  Aligned_cols=41  Identities=24%  Similarity=0.498  Sum_probs=33.0

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .+.|+|+|..+..          ......|.|.+++.+|+|.|.|.+.+..
T Consensus        43 ~~~w~k~g~~l~~----------~~~~~~l~i~~v~~~dsG~Y~C~~~~~~   83 (108)
T 4hwn_A           43 LFSFYKDGRIVQS----------RGLSSEFQIPTASEDHSGSYWCEAATED   83 (108)
T ss_dssp             EEEEEETTEEEEE----------EESCCEEEESSCCGGGCEEEEEEEECTT
T ss_pred             EEEEEECCcCccC----------CCcccEEEeCccCcccCeEEEEEEEeCC
Confidence            3899999987643          1235779999999999999999998754

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=98.33  E-value=1.6e-06  Score=53.25  Aligned_cols=33  Identities=12%  Similarity=0.222  Sum_probs=25.5

Q ss_pred             EEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        80 ~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      .|.|......| +.|+|.+.+..+.......+.+
T Consensus       231 ~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~~  263 (267)
T 3u1s_H          231 VVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  263 (267)
T ss_dssp             EEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEECchhcCC-CEEEEEEEECCCCcceEEEccc
Confidence            57788887778 9999999999877655555544

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=98.33  E-value=9.9e-07  Score=47.63  Aligned_cols=37  Identities=30%  Similarity=0.557  Sum_probs=33.5

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ...|.|.+++.+|+|.|.|.+.|..+.....+.|.|.
T Consensus        88 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  124 (126)
T 1eaj_A           88 DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  124 (126)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEEEECcCChHHCeEEEEEEEcCCccCCcEEEEEEE
Confidence            3679999999999999999999999888888888886

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=98.33  E-value=4.7e-07  Score=54.08  Aligned_cols=46  Identities=17%  Similarity=0.195  Sum_probs=35.5

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      |.+.|+|+|..+..  . .   ........|.|.+++.+|+|.|.|.+.+..
T Consensus       135 ~~~~W~k~g~~~~~--~-~---~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  180 (218)
T 1uct_A          135 DRFSLAKEGELSLP--Q-H---QSGEHPANFSLGPVDLNVSGIYRCYGWYNR  180 (218)
T ss_dssp             SEEEEEETTCSSCC--S-E---EECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             CEEEEEECCCcccc--c-c---cCCCccCEEEEccCCcccCEEEEEEEEcCC
Confidence            57999999986653  1 1   123456889999999999999999998753

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.32  E-value=8.6e-07  Score=58.23  Aligned_cols=50  Identities=20%  Similarity=0.213  Sum_probs=41.4

Q ss_pred             ccCCcEEEEEeCC----------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          65 SVSDRRLMETRGN----------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        65 ~~~~~~~~~~~~~----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .|.|.+.|...+.                ...|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus       377 ~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~g~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~  442 (452)
T 3zyi_A          377 PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVS  442 (452)
T ss_dssp             CTTSEEEEECTTSCEECSSCCCSSCEECTTSCEECSSCCTTCCEEEEEEEECSSCEEEEEEEEEC-
T ss_pred             CCCCcEEEEeCCCcEeccCCCCCCEEECCCCeEEEeecCHHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence            3888888876321                2469999999999999999999999999999988875

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=98.32  E-value=5.1e-06  Score=43.44  Aligned_cols=42  Identities=33%  Similarity=0.370  Sum_probs=32.0

Q ss_pred             cEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          69 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        69 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ++....++....|.|.++..+|+|.|+|.|    |.....+.|.|.
T Consensus        53 ~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----g~~~~~~~l~V~   94 (100)
T 2yuv_A           53 KYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTELFVR   94 (100)
T ss_dssp             TEEEEEETTEEEEEEEEECTTTCCEEEEEE----TTEEEEEEEEEC
T ss_pred             CEEEEecCCEEEEEEcCCCcCcCEEEEEEE----CCceEEEEEEEe
Confidence            444444555668999999999999999999    555666777764

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=98.32  E-value=1.4e-06  Score=48.33  Aligned_cols=38  Identities=29%  Similarity=0.413  Sum_probs=33.9

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ....|.|.+++.+|+|.|+|.+.|..+.....+.|.|.
T Consensus        83 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  120 (139)
T 1pko_A           83 GKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE  120 (139)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CeEEEEEccCCHHHCEEEEEEEEcCCCceEEEEEEEEe
Confidence            35789999999999999999999999888888888875

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=98.31  E-value=4.5e-06  Score=45.31  Aligned_cols=51  Identities=25%  Similarity=0.498  Sum_probs=36.0

Q ss_pred             cceEEEECC--E---EeC-------CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           2 GMMSWYQDT--F---LIE-------PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         2 p~v~W~~~~--~---~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      +.|.|||..  .   .+.       .....++..........|+|.+++.+|+|.|.|.+.+.
T Consensus        33 ~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   95 (119)
T 2e27_L           33 KKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGSGRDYSFSISNLEPEDAATYYCLQYDN   95 (119)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCEEEEEEECGG
T ss_pred             ceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccC
Confidence            579999853  1   111       00135666554556778999999999999999999763

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=98.31  E-value=2.1e-06  Score=45.67  Aligned_cols=51  Identities=37%  Similarity=0.580  Sum_probs=34.1

Q ss_pred             cceEEEECC--E---EeCC-------CCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           2 GMMSWYQDT--F---LIEP-------SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         2 p~v~W~~~~--~---~~~~-------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      +.|.|||..  .   .+..       ....++..........|+|.+++.+|+|.|.|.+.+.
T Consensus        31 ~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   93 (108)
T 1qfw_M           31 SFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSGSATDFTLTISSVQAEDFADYHCGQTYN   93 (108)
T ss_dssp             SCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCBCSSEEEEEESSCCTTCCSEEEEEECSS
T ss_pred             cEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEcCCCEEEEEECCCChhhCEEEEEEEccC
Confidence            579999853  1   1110       0134454433334578999999999999999999764

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.31  E-value=2.8e-06  Score=51.60  Aligned_cols=52  Identities=31%  Similarity=0.452  Sum_probs=37.0

Q ss_pred             cceEEEEC--CEEeC----------CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           2 GMMSWYQD--TFLIE----------PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~~--~~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      |.|.|||.  +..+.          .....++..........|.|.+++.+|+|.|.|.+.+..
T Consensus       180 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  243 (256)
T 3juy_B          180 RRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGAS  243 (256)
T ss_dssp             CCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSS
T ss_pred             eeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCC
Confidence            68999983  22111          001356665555667789999999999999999998743

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=98.31  E-value=3.9e-06  Score=49.36  Aligned_cols=46  Identities=24%  Similarity=0.226  Sum_probs=34.2

Q ss_pred             cEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCcc---ceeeEEEEEEe
Q psy3272          69 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG---RAKKYMELSEL  114 (115)
Q Consensus        69 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~---~~~~~~~l~v~  114 (115)
                      ++..........|.|.++..+|+|.|+|.+.|..+   .....+.|.|.
T Consensus        60 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~  108 (213)
T 3mj8_L           60 HFSGSNSGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVL  108 (213)
T ss_dssp             TEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEE
T ss_pred             cEEEEecCCEEEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEe
Confidence            44444455677899999999999999999999887   33444555553

>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=98.30  E-value=3.2e-07  Score=46.47  Aligned_cols=50  Identities=12%  Similarity=0.194  Sum_probs=30.5

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v   62 (115)
                      +.|+|++++..+..           .....|.+.+...++.|.|.|.+.+..+...+.|.|
T Consensus        18 ~~i~W~k~~~~i~~-----------~~~~tL~L~~~~~d~sG~Y~C~~~~~~~~~~s~LqV   67 (79)
T 1xiw_B           18 TSITWVEGTVGTLL-----------SDITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQV   67 (79)
T ss_dssp             SCEEEEEECCCEEE-----------GGGTEEEEEEGGGCCEEEEEEC--------CEEEEE
T ss_pred             CCEEEEECCccccc-----------ccCCeEEeccCcCCCCeEEEecCCCCCCcccEEEEE
Confidence            57999999876654           124667777777789999999888766644344443

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.30  E-value=3.1e-06  Score=51.37  Aligned_cols=52  Identities=27%  Similarity=0.443  Sum_probs=36.9

Q ss_pred             cceEEEEC--CEEeC----------CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           2 GMMSWYQD--TFLIE----------PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~~--~~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      |.|.|||.  +..+.          .....++..........|+|.+++.+|+|.|.|.+.+..
T Consensus       168 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~  231 (256)
T 3umt_A          168 SNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASS  231 (256)
T ss_dssp             TCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSS
T ss_pred             cEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCC
Confidence            58999994  22211          001355665555667789999999999999999998743

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=98.30  E-value=1.8e-06  Score=45.88  Aligned_cols=46  Identities=11%  Similarity=0.190  Sum_probs=33.1

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      +.+.|||++..+..  . +  .........|.|.+++.+|+|.|.|.+.+.
T Consensus        33 ~~~~w~k~g~~~~~--~-~--~~~~~~~~~l~I~~v~~~dsG~Y~C~~~n~   78 (105)
T 2vsd_A           33 AWVQLWLNGTLRFD--K-E--KDKEQDAAEFSFAVTNLEDAGTYQCRYQVS   78 (105)
T ss_dssp             EEEEEEETTEEEEE--E-E--ECTTCSEEEEEEECCSGGGCEEEEEEEEEE
T ss_pred             cEEEEEECCcccee--e-e--ccCCCCEEEEEECCCCHHHCeEEEEEEEcC
Confidence            35789999876532  0 0  001234678999999999999999999864

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=98.30  E-value=2.5e-06  Score=45.40  Aligned_cols=48  Identities=27%  Similarity=0.475  Sum_probs=34.4

Q ss_pred             cceEEEECC--E----EeCCCCCCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeec
Q psy3272           2 GMMSWYQDT--F----LIEPSVSDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus         2 p~v~W~~~~--~----~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      +.|.|||..  .    .+..  ..++.....  .....|+|.+++.+|+|.|.|.+.+
T Consensus        32 ~~v~W~r~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (108)
T 2coq_A           32 DSTNWYRTKLGSTKEQTISI--GGRYSETVDEGSNSASLTIRDLRVEDSGTYKCKAYR   87 (108)
T ss_dssp             EEEEEEEEETTCCCEEECCC--BTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CEEEEEEcCCCCCcEEEEEe--CCceEEEEcCCCCEEEEEECCCCcccCEEEEEEEEe
Confidence            478999863  2    1222  456654322  3567899999999999999999976

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.30  E-value=1.3e-06  Score=51.69  Aligned_cols=62  Identities=11%  Similarity=0.134  Sum_probs=39.8

Q ss_pred             cceEEEE-CCEEeCCCCCCCEEEEEeC--CeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEecc
Q psy3272           2 GMMSWYQ-DTFLIEPSVSDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSVS   65 (115)
Q Consensus         2 p~v~W~~-~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g~   65 (115)
                      |.|+|++ ++..+..  ..........  ....|.|.++..+|.|.|.|.+.+..+....  .+.|.+.
T Consensus       141 ~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  207 (222)
T 4i0k_A          141 AEVFWKDGQGVPLTG--NVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQ  207 (222)
T ss_dssp             CEEEEECTTSCBCCS--EEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC-
T ss_pred             CeEEEEcCCCccCCC--CcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCC
Confidence            6899999 4544433  1111111111  1245788999999999999999999888777  4555443

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.30  E-value=1.3e-06  Score=51.86  Aligned_cols=52  Identities=19%  Similarity=0.401  Sum_probs=34.3

Q ss_pred             CcceEEEECCEEeCCCC--CCCEEEEEe----CC-----eEEEEEecCCCCCCeEEEEEeecC
Q psy3272           1 MGMMSWYQDTFLIEPSV--SDRRLMETR----GN-----KHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~--~~~~~~~~~----~~-----~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      .|.|+|++++.++....  ..++.+...    ..     ...|.|.....+|.|.|+|.+.+.
T Consensus       149 ~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          149 APKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             CCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             CCEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            37899999999887621  123332211    11     166888755566699999999984

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=98.30  E-value=7.3e-06  Score=43.74  Aligned_cols=70  Identities=17%  Similarity=0.279  Sum_probs=44.7

Q ss_pred             CCCCCeEEEEEeecCCcceeEEEEEeccc---CCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          38 QSTDFGNYSCVADNNLGRAKKYMELSVSV---SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ...+.-...|.+... .  .....-+|.+   ..++.+..++....|.|.++..+|.|.|+|.+    +.....+.|.|.
T Consensus        32 ~~G~~v~l~C~~~~~-p--~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----~~~~~~~~l~V~  104 (113)
T 2edh_A           32 TEGATAVLRCELSKM-A--PVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVR  104 (113)
T ss_dssp             CTTSCEEEEEEESSC-C--CCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE----TTEEEEEEEEEC
T ss_pred             eCCCeEEEEEEECCC-C--cEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhCEEEEEEe----CCCCEEEEEEEe
Confidence            345566788887432 1  1122223322   23455555566678999999999999999999    555566667664

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.29  E-value=3.7e-06  Score=51.90  Aligned_cols=51  Identities=24%  Similarity=0.395  Sum_probs=36.8

Q ss_pred             cceEEEE--CCEEeC----------CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           2 GMMSWYQ--DTFLIE----------PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         2 p~v~W~~--~~~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      |.|.|+|  ++..+.          .....++..........|+|.++..+|+|.|.|.+.+.
T Consensus       191 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  253 (282)
T 1qok_A          191 SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSS  253 (282)
T ss_dssp             SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeC
Confidence            5799999  554331          00135565544556778999999999999999999864

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=98.29  E-value=4.1e-05  Score=47.62  Aligned_cols=46  Identities=13%  Similarity=0.244  Sum_probs=35.1

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      |.|.|+++|..++.  . ++.. .......|+|.++... .|.|.|.+.+.
T Consensus        41 p~i~W~~~g~~i~~--~-~~~~-~~~~~~~L~i~~~~~~-~g~Y~C~a~~~   86 (303)
T 1i1r_A           41 NYIVWKTNHFTIPK--E-QYTI-INRTASSVTFTDIASL-NIQLTCNILTF   86 (303)
T ss_dssp             GGEEEEETTEECCG--G-GCEE-EETTEEEEEECSCCCS-EEEEEEEEEET
T ss_pred             hheEEEECCEECCh--h-heee-eCCcEEEEEEcCcCCC-ceEEEEecccC
Confidence            68999999998865  3 3332 2344678999999887 59999999874

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=98.29  E-value=2.4e-06  Score=45.64  Aligned_cols=51  Identities=25%  Similarity=0.455  Sum_probs=35.8

Q ss_pred             cceEEEECC--E-E--eC-------CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           2 GMMSWYQDT--F-L--IE-------PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         2 p~v~W~~~~--~-~--~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      +.|.|||..  . +  +.       .....|+..........|+|.+++.+|+|.|.|.+.+.
T Consensus        35 ~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   97 (111)
T 1j05_L           35 GFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNE   97 (111)
T ss_dssp             ECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             ceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEccCCEEEEEECCCCcccCEEEEEEEecC
Confidence            468999852  2 1  11       00135666554556678999999999999999999764

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=98.29  E-value=3.5e-06  Score=45.11  Aligned_cols=48  Identities=25%  Similarity=0.448  Sum_probs=34.6

Q ss_pred             cceEEEEC--CE----EeCCCCCCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeec
Q psy3272           2 GMMSWYQD--TF----LIEPSVSDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus         2 p~v~W~~~--~~----~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      +.|.|||.  +.    .+..  ..++.....  .....|+|.+++.+|+|.|.|.+.+
T Consensus        32 ~~v~W~r~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   87 (111)
T 2ywz_A           32 SSTTWYRTQLGSTNEKTISI--GGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQADY   87 (111)
T ss_dssp             CEEEEEEEETTCCCCEECCS--BTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CEEEEEEeCCCCCceEeeEe--CCCEEEEEeCCCCEEEEEECCCChhcCEEEEEEEEc
Confidence            57999985  22    1222  456654332  3467899999999999999999986

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=98.29  E-value=1.4e-06  Score=46.76  Aligned_cols=25  Identities=32%  Similarity=0.432  Sum_probs=22.3

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCC
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      ...|+|.+++.+|+|.|.|.+.+..
T Consensus        72 ~~sL~I~~v~~~DsG~Y~C~v~~~~   96 (116)
T 2or8_A           72 DVSLTIENSVESDSGLYCCRVEIPG   96 (116)
T ss_dssp             BCCEEESSCCGGGCEEEEEEECCSS
T ss_pred             eEEEEECCCCcccCEEEEEEEEcCC
Confidence            4679999999999999999998754

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.28  E-value=5.6e-06  Score=44.14  Aligned_cols=70  Identities=17%  Similarity=0.180  Sum_probs=41.3

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEeccc---CCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSV---SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ..+.-...|.+....  ......-.|.+   ..++.....+....|.|.++..+|.|.|+|.+.|    ....+.|.|.
T Consensus        27 ~G~~v~L~C~~~~p~--~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~l~V~   99 (113)
T 2cpc_A           27 RLERVVLTCELCRPW--AEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD----ESASFTVTVT   99 (113)
T ss_dssp             TTCCEEEEEEESCTT--CCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEESSS----CEEEEEEEEE
T ss_pred             cCCeEEEEEEecCCC--CeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEEEEec----CcEEEEEEEe
Confidence            455567788774211  11111112211   2233344444557899999999999999999999    3345555553

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=98.28  E-value=4.4e-06  Score=45.22  Aligned_cols=62  Identities=26%  Similarity=0.405  Sum_probs=38.8

Q ss_pred             ceEEEECCEEeCC-----------CCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeec-CCcceeE--EEEEecccC
Q psy3272           3 MMSWYQDTFLIEP-----------SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN-NLGRAKK--YMELSVSVS   67 (115)
Q Consensus         3 ~v~W~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~-~~~~~~~--~~~v~g~~~   67 (115)
                      .|.|+|++..+..           ....|+.+   .....|+|.+++.+|+|.|.|.+.. ..+....  .|.|.+.|.
T Consensus        36 ~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~---~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L~V~~pp~  111 (117)
T 3q0h_A           36 QVNWEQQDQLLAICNADLGWHISPSFKDRVAP---GPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSV  111 (117)
T ss_dssp             EEEEEETTEEEEEEETTTEEECCGGGTTTEEE---CSTTCEEECSCCGGGCEEEEEEEEEETTCCEEEEEEEEEECC--
T ss_pred             EEEEEeCCEEEEEEECCCCceeCccccCcEEe---CCceEEEEeeCChhhCEEEEEEEEECCCCCeEEEEEEEEEccCc
Confidence            6899998654321           00234433   2356899999999999999999864 3344433  566654443

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=98.27  E-value=5.9e-06  Score=48.25  Aligned_cols=37  Identities=27%  Similarity=0.397  Sum_probs=32.8

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ...|.|.++..+|.|.|+|.+.|..+.....+.|.|.
T Consensus        66 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~  102 (202)
T 3bp6_B           66 KALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVK  102 (202)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eeEEEECCCCHHHCcEEEEEEEeCCCcceEEEEEEec
Confidence            4689999999999999999999999987778877764

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.26  E-value=2.2e-06  Score=51.93  Aligned_cols=35  Identities=29%  Similarity=0.389  Sum_probs=28.5

Q ss_pred             CCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272          19 DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus        19 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .++..........|+|.+++.+|+|.|.|.+.+..
T Consensus       196 ~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~  230 (253)
T 3uzq_A          196 ARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEV  230 (253)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             CceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence            45655555667789999999999999999998754

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.26  E-value=5.1e-06  Score=43.97  Aligned_cols=72  Identities=14%  Similarity=0.164  Sum_probs=42.7

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecc---cCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVS---VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ..+.-.+.|.+............-+|.   +..++....++....|.|.++..+|+|.|+|.+.|.    ...+.|.|.
T Consensus        22 ~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~----~~~a~L~V~   96 (104)
T 2eny_A           22 EGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGL----TSKASLIVR   96 (104)
T ss_dssp             SSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEETTE----EEEECEEEE
T ss_pred             CCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEECCe----eEEEEEEEe
Confidence            445567788775322110000111221   223455555666778999999999999999998663    345556554

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=98.26  E-value=1.5e-06  Score=46.77  Aligned_cols=36  Identities=17%  Similarity=0.103  Sum_probs=31.1

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccc-eeeEEEEEEe
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGR-AKKYMELSEL  114 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~-~~~~~~l~v~  114 (115)
                      ..|.|.+++.+|+|.|+|.+.+..+. .+..+.|.|.
T Consensus        72 gSL~I~nvt~~D~G~Ytc~v~~~~~~~~~~~~~L~V~  108 (111)
T 2qsq_A           72 ASLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRVY  108 (111)
T ss_dssp             SCEEECSCCGGGCEEEEEEEEETTSCCEEEEEEEEEE
T ss_pred             CcEEEccCcccCCeEEEEEEEeCCCcEEEEEEEEEEe
Confidence            37999999999999999999998764 6667888775

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.25  E-value=2.8e-06  Score=45.67  Aligned_cols=48  Identities=19%  Similarity=0.119  Sum_probs=34.7

Q ss_pred             ecccCCcEEEEEeCC----------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 SVSVSDRRLMETRGN----------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .|.|.|.+.|++++.                ...|.|.++..+|+|.|+|.+    |.....+.|.|.
T Consensus        38 ~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~----g~~~~~~~L~V~  101 (115)
T 2cr6_A           38 SPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVT  101 (115)
T ss_dssp             ESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE----TTEECCEEEEEE
T ss_pred             cCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEE----CCeeEEEEEEEE
Confidence            566677777776542                236999999999999999994    444555666664

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.24  E-value=2.3e-06  Score=52.06  Aligned_cols=52  Identities=29%  Similarity=0.399  Sum_probs=36.8

Q ss_pred             cceEEEE--CCEEeC----------CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           2 GMMSWYQ--DTFLIE----------PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~--~~~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      |.|.|+|  ++..+.          .....++..........|.|.++..+|+|.|.|.+.+..
T Consensus       169 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          169 NYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG  232 (257)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred             CcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence            5899999  554321          001345554444456789999999999999999998754

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=98.24  E-value=1.6e-05  Score=44.13  Aligned_cols=67  Identities=19%  Similarity=0.155  Sum_probs=42.6

Q ss_pred             cceEEEEC---CEEeCC--CCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCc-ceeE----EEEEecccCC
Q psy3272           2 GMMSWYQD---TFLIEP--SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG-RAKK----YMELSVSVSD   68 (115)
Q Consensus         2 p~v~W~~~---~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~-~~~~----~~~v~g~~~~   68 (115)
                      +.+.|||.   |..+..  ....++..........|+|.+++.+|+|.|.|.+.+..+ ....    .|.|.+.|.+
T Consensus        47 ~~v~Wyrq~~~g~~~~~l~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~fg~GT~L~V~~~p~~  123 (134)
T 3kg5_A           47 GNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGFSTL  123 (134)
T ss_dssp             CCCEEEEESSSSSCCEECCCCTTTEEEEECSSEEEEEECSCCTTTCEEEEEEEECTTTCCEEECCCEEEEEECC---
T ss_pred             ceEEEEEECCCCCCcEEEEEECCeEEEEccCCEEEEEECCCCcCcCEEEEEEEEcCCCCceEECCCEEEEEecCCCH
Confidence            46899987   332210  114667665555678999999999999999999976521 1111    5666665544

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=98.23  E-value=7.9e-07  Score=47.09  Aligned_cols=27  Identities=33%  Similarity=0.377  Sum_probs=23.2

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCCcc
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNLGR   55 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~~~   55 (115)
                      ...|+|.+++.+|+|.|.|.+.+..+.
T Consensus        71 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~   97 (109)
T 2oyp_A           71 DVSLIIKNVTLDDHGTYCCRIQFPGLM   97 (109)
T ss_dssp             BCCEEECSCCGGGCEEEEEEECCSSTT
T ss_pred             cEeEEEccCCChhCeEEEEEEEcCCcc
Confidence            367999999999999999999876533

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.23  E-value=2.1e-07  Score=54.87  Aligned_cols=52  Identities=12%  Similarity=0.163  Sum_probs=35.8

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEE-e----CCeEEEEEecCCCCCCeEEEEEeecCCcc
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMET-R----GNKHTLTIKNVQSTDFGNYSCVADNNLGR   55 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~-~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   55 (115)
                      |.|+|+|+|.++..  ........ .    .....|.|.++..+|.|.|+|.+.+....
T Consensus       145 ~~v~W~k~g~~~~~--~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          145 ATVTWKANGATIND--GVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             CEEEEEETTEEECS--SCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             cEEEEEECCeEcCC--CeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence            58999999998864  21100000 0    01356889999999999999999987644

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=98.23  E-value=6.8e-06  Score=44.99  Aligned_cols=35  Identities=29%  Similarity=0.401  Sum_probs=28.7

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      ..++..........|+|.+++.+|+|.|.|.+.+.
T Consensus        63 ~~r~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~   97 (126)
T 4ffy_L           63 PARFSGSGSETDFTLTIDSVETDDAATYYCQQNNE   97 (126)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CCcEEEecCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            45666655567789999999999999999999764

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=98.23  E-value=7.4e-06  Score=43.78  Aligned_cols=51  Identities=37%  Similarity=0.579  Sum_probs=36.0

Q ss_pred             cceEEEECC--E---EeC-------CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           2 GMMSWYQDT--F---LIE-------PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         2 p~v~W~~~~--~---~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      +.|.|||..  .   .+.       .....++..........|+|.+++.+|+|.|.|.+.+.
T Consensus        34 ~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   96 (111)
T 1i3g_L           34 TAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYSS   96 (111)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSS
T ss_pred             CCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            579999853  1   121       01135666554556678999999999999999999764

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=98.23  E-value=1.8e-06  Score=46.03  Aligned_cols=51  Identities=25%  Similarity=0.419  Sum_probs=34.3

Q ss_pred             cceEEEECCEEeC----------CCCCCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           2 GMMSWYQDTFLIE----------PSVSDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         2 p~v~W~~~~~~~~----------~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      +.+.|||....+.          .....|+....  ......|+|.+++.+|+|.|.|.+.+.
T Consensus        32 ~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   94 (109)
T 1pew_A           32 NYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEADYYCQSYDA   94 (109)
T ss_dssp             SCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             ccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccCCCEEEEEECCCChhhCEEEEEEEEeC
Confidence            5789999762110          00135565542  334678999999999999999999764

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=98.22  E-value=2.8e-06  Score=45.57  Aligned_cols=26  Identities=35%  Similarity=0.551  Sum_probs=23.0

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      ....|+|.+++.+|+|.|.|.+.+..
T Consensus        69 ~~~~L~I~~v~~~DsG~Y~C~~~n~~   94 (113)
T 1h5b_A           69 RYSTLHIRDAQLEDSGTYFCAAEASS   94 (113)
T ss_dssp             SEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             CEEEEEECCCChhhCEEEEEEEecCC
Confidence            45689999999999999999998754

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.21  E-value=6.8e-06  Score=43.18  Aligned_cols=31  Identities=23%  Similarity=0.511  Sum_probs=25.8

Q ss_pred             EEeCCeEEEEEeccCCCCCeeeEEEeecCcc
Q psy3272          73 ETRGNKHTLTIKNVQSTDFGNYSCVADNNLG  103 (115)
Q Consensus        73 ~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~  103 (115)
                      ...+....|.|.++..+|+|.|+|.+.|..+
T Consensus        59 ~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~   89 (104)
T 2e6p_A           59 KMDGRKHRLILPEAKVQDSGEFECRTEGVSA   89 (104)
T ss_dssp             EEETTEEEEEESSCCTTTCEEEEEECSSCCC
T ss_pred             EeCCCEEEEEECCCChhhCEEEEEEECCceE
Confidence            3344556899999999999999999999854

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.21  E-value=1.6e-06  Score=50.36  Aligned_cols=45  Identities=13%  Similarity=0.185  Sum_probs=32.5

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.+.|++++.++..  .         ....|.+..  .+|+|.|+|.+.|..+...+
T Consensus       129 ~p~i~W~~~~~~l~~--~---------~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~  173 (180)
T 2dru_A          129 DVELKLYQGKEHLRS--L---------RQKTMSYQW--TNLRAPFKCKAVNRVSQESE  173 (180)
T ss_dssp             TCEEEEEETTEEEEE--E---------SSSEEEEEC--SCCSSCEEEEEEETTEEEEE
T ss_pred             CCEEEEEECCeECcC--C---------CCCEEEEEE--hhcCccEEEEEecCcCcccc
Confidence            378999999987752  1         233455533  78999999999998776654

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=98.21  E-value=2.3e-06  Score=45.76  Aligned_cols=37  Identities=24%  Similarity=0.355  Sum_probs=32.4

Q ss_pred             eEEEEEeccCCCCCeeeEEEeec-CccceeeEEEEEEe
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADN-NLGRAKKYMELSEL  114 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n-~~~~~~~~~~l~v~  114 (115)
                      ...|.|.+++.+|+|.|.|.+.+ ..+.....+.|.|.
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~L~V~  115 (118)
T 3udw_C           78 NASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL  115 (118)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CcEEEEeecChHHCeEEEEEEEECCCCCccceEEEEEE
Confidence            56899999999999999999999 77777778888775

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=98.20  E-value=8.6e-06  Score=47.99  Aligned_cols=35  Identities=26%  Similarity=0.379  Sum_probs=28.7

Q ss_pred             cEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCcc
Q psy3272          69 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG  103 (115)
Q Consensus        69 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~  103 (115)
                      ++..........|.|.+++.+|+|.|.|.+.|..+
T Consensus        65 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~   99 (218)
T 3s96_B           65 RFSGSSSGADRYLSISNIQPEDEAIYICGVGDTIK   99 (218)
T ss_dssp             TEEEEEETTEEEEEESSCCGGGCEEEEEEEEEEET
T ss_pred             ceEEecCCceEEEEEccCCcccCEEEEEEEecCCC
Confidence            44444455667899999999999999999999876

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=98.19  E-value=9.6e-06  Score=43.51  Aligned_cols=51  Identities=31%  Similarity=0.510  Sum_probs=35.9

Q ss_pred             cceEEEECC--E---EeC-------CCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           2 GMMSWYQDT--F---LIE-------PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         2 p~v~W~~~~--~---~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      +.|.|||..  .   .+.       .....++..........|+|.+++.+|+|.|.|.+.+.
T Consensus        37 ~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   99 (114)
T 1eeq_A           37 NYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYS   99 (114)
T ss_dssp             ECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             ccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEeecCCEEEEEECCCCcccCEEEEEEEeeC
Confidence            579999853  1   111       01135666554556678999999999999999999764

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=98.19  E-value=1.7e-06  Score=47.62  Aligned_cols=25  Identities=28%  Similarity=0.396  Sum_probs=22.1

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCC
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      ...|.|.+++.+|+|.|.|.+.+..
T Consensus        91 ~~sL~I~~v~~~D~G~Y~C~v~~~~  115 (135)
T 1xt5_A           91 APTLRLTHVHPQDGGRYWCQVAQWS  115 (135)
T ss_dssp             SCCEEECSCCGGGCEEEEEEEECSS
T ss_pred             CCeEEECCCChhhCcEEEEEEEcCC
Confidence            4679999999999999999998753

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.17  E-value=9.1e-06  Score=43.02  Aligned_cols=72  Identities=22%  Similarity=0.170  Sum_probs=42.9

Q ss_pred             CCCCCeEEEEEeecCCcceeEEEEEeccc---C-CcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          38 QSTDFGNYSCVADNNLGRAKKYMELSVSV---S-DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g~~---~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      ...+.-.+.|.+......  ....-+|.+   . .++....++....|.|.++..+|+|.|+|.+.+    ....+.|.|
T Consensus        29 ~~G~~v~L~C~~~~p~~~--v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~----~~~~~~l~V  102 (104)
T 1pd6_A           29 SKGHKIRLTVELADHDAE--VKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG----EKCSTELFV  102 (104)
T ss_dssp             ETTSCEEEEEECSSSSSC--CEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT----EEECCEEEE
T ss_pred             ecCCCEEEEEEEcCCCCE--EEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEECC----CcEEEEEEE
Confidence            345566778887322111  111112211   1 344455556667899999999999999999954    334555666


Q ss_pred             eC
Q psy3272         114 LE  115 (115)
Q Consensus       114 ~~  115 (115)
                      .+
T Consensus       103 ~e  104 (104)
T 1pd6_A          103 KE  104 (104)
T ss_dssp             EC
T ss_pred             eC
Confidence            43

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=98.17  E-value=6.2e-06  Score=45.69  Aligned_cols=66  Identities=21%  Similarity=0.360  Sum_probs=42.6

Q ss_pred             CCCCCCeEEEEEeecCCcceeEEEEEecc-------cCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCcc
Q psy3272          37 VQSTDFGNYSCVADNNLGRAKKYMELSVS-------VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG  103 (115)
Q Consensus        37 ~~~~d~G~y~C~~~~~~~~~~~~~~v~g~-------~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~  103 (115)
                      +...+.-...|.+... ......-+-.|.       ...++....++....|.|.++..+|+|.|.|.+.|..|
T Consensus        29 v~~G~~v~L~C~~~~~-~~v~W~r~~~g~~~~~l~~~~~r~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g  101 (133)
T 3khq_A           29 KKRSSMVKFHCYTNHS-GALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQNIQYEDNGIYFCKQKCDSA  101 (133)
T ss_dssp             ECTTCCEEEEEEESSS-SCEEEEEECTTSCCEECCCTTTTEEEEEETTEEEEEECSCCGGGCEEEEEEESSCC-
T ss_pred             EeCCCeEEEEEEeCCC-CEEEEEEeCCCCCCEEEEEeCCCEEEEcCCCEEEEEECCCChHHCEEEEEEEEeCCC
Confidence            3456667778887654 111111111121       23456555666778899999999999999999999865

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=98.16  E-value=3.2e-06  Score=44.71  Aligned_cols=36  Identities=33%  Similarity=0.366  Sum_probs=29.6

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      ...|.|.+++.+|+|.|.|.+.+..+.....+.|.|
T Consensus        71 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~l~V  106 (109)
T 2oyp_A           71 DVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKL  106 (109)
T ss_dssp             BCCEEECSCCGGGCEEEEEEECCSSTTCCEEEEEEE
T ss_pred             cEeEEEccCCChhCeEEEEEEEcCCcccceEEEEEE
Confidence            457999999999999999999998766555555554

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=98.16  E-value=6.1e-06  Score=44.12  Aligned_cols=47  Identities=17%  Similarity=0.159  Sum_probs=36.1

Q ss_pred             CcEEEEE--eCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          68 DRRLMET--RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        68 ~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .++.+..  ......|.|.++..+|+|.|.|.+.+........+.|.|.
T Consensus        61 ~R~~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~v~~~~~~~~~~v~L~V~  109 (113)
T 1zox_A           61 NRVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNIG  109 (113)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCSSSCCEEEEEEEEE
T ss_pred             CCEEEEECCcCCEEEEEEccCCHHHCEEEEEeeEcCCCCccEEEEEEEE
Confidence            3444443  2346789999999999999999999986666677888775

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.16  E-value=3e-06  Score=51.50  Aligned_cols=57  Identities=11%  Similarity=0.087  Sum_probs=39.7

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC-----cceeEEEEEec
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL-----GRAKKYMELSV   64 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~-----~~~~~~~~v~g   64 (115)
                      +.+.|+|+|..+..      ..........|.|.+++.+|+|.|.|.+.+..     ......|.|.|
T Consensus       130 ~~~~w~k~g~~~~~------~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~  191 (242)
T 1p6f_A          130 SMFLLLKEGRSSHV------QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG  191 (242)
T ss_dssp             SEEEEEECSSSCEE------EEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred             CEEEEEECCCccCc------cccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEec
Confidence            57899999875542      11123457889999999999999999998753     11122666765

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=98.15  E-value=1.5e-06  Score=50.09  Aligned_cols=45  Identities=13%  Similarity=0.187  Sum_probs=32.0

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.++|++++..+..  ...         ..|.+.  ...|.|.|+|.+.|..+....
T Consensus       119 ~p~i~W~~~~~~l~~--~~~---------~~l~~~--~~~~~g~Y~C~a~N~~~~~~~  163 (171)
T 1ccz_A          119 DVELKLYQGKEHLRS--LRQ---------KTMSYQ--WTNLRAPFKCKAVNRVSQESE  163 (171)
T ss_dssp             SCEEEEEETTEEEEE--ESS---------SEEEEE--CSCCSSCEEEEEEETTEEEEE
T ss_pred             CcEEEEEECCEECcC--Ccc---------eEEEEe--ccCCCceEEEEEEcccCcccc
Confidence            378999999988764  221         223333  367899999999998876654

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=98.14  E-value=6.5e-06  Score=48.40  Aligned_cols=50  Identities=12%  Similarity=0.155  Sum_probs=34.5

Q ss_pred             ceEEEECCEEeCCCCCCCEEEE--EeC-----CeEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLME--TRG-----NKHTLTIKNVQSTDFGNYSCVADNNLG   54 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~--~~~-----~~~~l~i~~~~~~d~G~y~C~~~~~~~   54 (115)
                      .|+|+|+|.++..  .......  ...     ....|.|..+..+|.|.|+|.+.+...
T Consensus       144 ~v~W~k~g~~~~~--~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  200 (210)
T 1lk3_L          144 SVKWKIDGTERRD--GVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTS  200 (210)
T ss_dssp             EEEEEETTEECCT--TEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred             EEEEEeCCccCCC--CceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCC
Confidence            7999999998765  2000000  000     124799999999999999999998654

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1

Probab=98.14  E-value=8.2e-06  Score=43.27  Aligned_cols=54  Identities=19%  Similarity=0.267  Sum_probs=37.9

Q ss_pred             CcceEEEECC----EEeCCCCCCCEEEE-EeC--CeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDT----FLIEPSVSDRRLME-TRG--NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~----~~~~~~~~~~~~~~-~~~--~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|-|-+    .+|+.    +.+.- ...  .-..|.+..+.+.|+|.|+|.+....+...+
T Consensus        41 rP~VtWcKln~~~c~~L~~----~~q~w~E~~N~s~fvLhf~~V~~sDsGsYRCsAn~~sg~ieS  101 (120)
T 2aw2_A           41 RPHVTWCKLNGTTCVKLED----RQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIES  101 (120)
T ss_dssp             CCEEEEEEECSSCEEECCS----SCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CCceEEEecCCceEEECcc----ccccceecCCeeEEEEEEeeeeEcCCcceEEEeeCCCCcEEe
Confidence            3899999844    45554    22211 111  1347899999999999999999988877766

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.13  E-value=2.6e-06  Score=50.11  Aligned_cols=44  Identities=14%  Similarity=0.143  Sum_probs=32.8

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      |.|+|++++..+..  . .     ......|.|..+..+|.|.|+|.+.+..
T Consensus       157 p~v~W~~~~~~~~~--~-~-----~~~~~~L~i~~~~~~~~g~Y~C~a~n~~  200 (214)
T 2zg1_A          157 LTFSWTGNALSPLD--P-E-----TTRSSELTLTPRPEDHGTNLTCQMKRQG  200 (214)
T ss_dssp             CEEEEESSTTSSSC--S-S-----CCCSSEEEECCCTTCCSCEEEEEEECC-
T ss_pred             ceEEEeCCCCccCC--C-C-----ceeEEEEEEecccHHcCcEEEEEEEeCC
Confidence            68999999864332  1 1     1245678999998899999999999864

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=98.12  E-value=3.1e-06  Score=49.66  Aligned_cols=47  Identities=11%  Similarity=0.066  Sum_probs=31.4

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEe-CCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETR-GNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      |.+.|+|+|..+..  ......... .....|.|.+++  |+|.|.|.+.+.
T Consensus       136 ~~~~w~k~g~~~~~--~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          136 DMYHLSREGEAHER--RLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             SEEEEEETTCSSCE--EEECEEEETTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred             ceEEEEECCcccCc--ccccccccCCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence            57899999876543  111011011 125789999998  999999999754

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.12  E-value=8.6e-06  Score=49.13  Aligned_cols=33  Identities=12%  Similarity=0.308  Sum_probs=25.5

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      .++.+...  .....|+|.+++.+|+|.|.|.+.+
T Consensus       197 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          197 GKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            45554322  3456899999999999999999986

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=98.12  E-value=1.6e-05  Score=41.95  Aligned_cols=41  Identities=24%  Similarity=0.523  Sum_probs=30.3

Q ss_pred             cEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          69 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        69 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      ++....++....|.|.++..+|+|.|+|.+.|.    ...+.|.|
T Consensus        52 ~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~----~~~~~l~V   92 (108)
T 2dm7_A           52 RYSLKQDGTRCELQIHDLSVADAGEYSCMCGQE----RTSATLTV   92 (108)
T ss_dssp             SCEEEEETTEEEEEESSCCTTTCSEEEEEETTE----EEEEECEE
T ss_pred             CEEEEecCCEEEEEECCCCcccCEEEEEEEcCC----EEEEEEEE
Confidence            444555666678999999999999999999653    34444554

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.12  E-value=4.7e-06  Score=50.64  Aligned_cols=34  Identities=21%  Similarity=0.380  Sum_probs=28.3

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCCcceeEEEE
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME   61 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~   61 (115)
                      ....|.|.++..+|+|.|.|.+.+..+.....+.
T Consensus       199 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~  232 (268)
T 3mj6_A          199 NDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIV  232 (268)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CeEEEEECcCChhhCeEEEEEEEcCCceEEEEEE
Confidence            4568999999999999999999998777666433

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=98.12  E-value=5.1e-06  Score=44.22  Aligned_cols=26  Identities=31%  Similarity=0.358  Sum_probs=22.8

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      ....|+|.+++.+|+|.|.|.+.+..
T Consensus        71 ~~~sL~I~~v~~~DsG~Y~C~v~~~~   96 (110)
T 2ptt_A           71 NNGALHISNVRKEDKGTYYMRVLRET   96 (110)
T ss_dssp             TTCCEEESSCCGGGCEEEEEEEESSS
T ss_pred             CCccEEECCCCcccCeEEEEEEEcCC
Confidence            45689999999999999999997654

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=98.11  E-value=1.1e-05  Score=48.07  Aligned_cols=51  Identities=16%  Similarity=0.193  Sum_probs=34.9

Q ss_pred             cceEEEECCEEeCCCCCC-C-EEEEE-----eCCeEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272           2 GMMSWYQDTFLIEPSVSD-R-RLMET-----RGNKHTLTIKNVQSTDFGNYSCVADNNLG   54 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~-~-~~~~~-----~~~~~~l~i~~~~~~d~G~y~C~~~~~~~   54 (115)
                      |.|+|+|+|..+..  .. . .....     ......|.|.....+|.|.|+|.+.+...
T Consensus       167 ~~v~W~k~g~~~~~--~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  224 (237)
T 3sob_L          167 AKVQWKVDNALQSG--NSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGL  224 (237)
T ss_dssp             CEEEEEETTEECCS--SEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred             eEEEEEECCCCCCC--ceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCC
Confidence            58999999998764  11 0 00000     00145688999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	115
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	8e-10
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	3e-09
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	2e-09
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	7e-08
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-08
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	6e-06
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	4e-08
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	1e-06
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	6e-08
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-06
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	7e-08
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	9e-07
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-07
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	3e-05
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	3e-07
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	9e-06
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	4e-07
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	2e-06
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	4e-07
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	4e-06
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	5e-07
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	1e-05
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	5e-07
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	7e-06
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	7e-07
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	1e-06
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	4e-05
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-06
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-05
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	2e-06
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	1e-05
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	5e-06
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	2e-05
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	6e-06
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	6e-05
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	7e-06
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	8e-05
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	7e-06
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	8e-06
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	1e-04
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	9e-06
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	6e-05
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	1e-05
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	4e-05
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-05
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-04
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	1e-05
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	0.001
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	2e-05
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	0.002
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	2e-05
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	5e-04
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	2e-05
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	9e-04
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	3e-05
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	4e-04
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	4e-05
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	1e-04
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	4e-05
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	0.002
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	7e-05
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	0.003
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	2e-04
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	0.001
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	3e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	7e-04
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	3e-04
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	3e-04
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	3e-04
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	0.001
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	0.001
d1neua_	119	b.1.1.1 (A:) Myelin membrane adhesion molecule P0	0.001
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	0.002
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	0.002
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	0.002

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 8e-10
 Identities = 10/62 (16%), Positives = 23/62 (37%)

Query: 3   MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 62
               +     +      R  +ET  ++   T++  +  D G Y+    N +G  +  + +
Sbjct: 67  DSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTV 126

Query: 63  SV 64
            V
Sbjct: 127 KV 128

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 3e-09
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
                R  +ET  ++   T++  +  D G Y+    N +G  +  + +  ++
Sbjct: 79  CETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 130

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 2e-09
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 4  MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
           +W +    I+ S  +   +E   N   LTI   +    G Y+ + +N LG  +  + L+
Sbjct: 32 CTWMKFRKQIQES--EHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLT 89

Query: 64 V 64
          V
Sbjct: 90 V 90

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 7e-08
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 64  VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
           +  S+   +E   N   LTI   +    G Y+ + +N LG  +  + L+ ++
Sbjct: 41  IQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVD 92

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 2e-08
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 4  MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
          M W ++    +         + R    +L +++V  +D GNY+CV +N  G       L 
Sbjct: 37 MRWLKNGKEFKQE-HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 95

Query: 64 V 64
          V
Sbjct: 96 V 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 6e-06
 Identities = 12/46 (26%), Positives = 20/46 (43%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
                 + R    +L +++V  +D GNY+CV +N  G       L 
Sbjct: 50  HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 95

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 4e-08
 Identities = 10/64 (15%), Positives = 15/64 (23%)

Query: 1   MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60
            G              + D     ++     L I + Q    G Y C             
Sbjct: 43  KGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNF 102

Query: 61  ELSV 64
            L+V
Sbjct: 103 NLTV 106

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 1e-06
 Identities = 11/89 (12%), Positives = 22/89 (24%), Gaps = 1/89 (1%)

Query: 25  TRGNKHTLTIKNVQSTDFGNYS-CVADNNLGRAKKYMELSVSVSDRRLMETRGNKHTLTI 83
           T G   T + +   ++                    +   + + D     ++     L I
Sbjct: 17  TVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHI 76

Query: 84  KNVQSTDFGNYSCVADNNLGRAKKYMELS 112
            + Q    G Y C              L+
Sbjct: 77  TDAQPAFTGGYRCEVSTKDKFDCSNFNLT 105

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 44.8 bits (105), Expect = 6e-08
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 30 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVS 65
            L IK V++ D G Y C A N  G       + V+
Sbjct: 54 SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 89

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 40.5 bits (94), Expect = 2e-06
 Identities = 11/34 (32%), Positives = 14/34 (41%)

Query: 79  HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
             L IK V++ D G Y C A N  G       + 
Sbjct: 54  SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 87

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.9 bits (105), Expect = 7e-08
 Identities = 14/48 (29%), Positives = 25/48 (52%)

Query: 20 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVS 67
          + +    GN + LTI  V+  D G Y+  A N+ G  ++ + L+V+  
Sbjct: 47 KYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRH 94

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.8 bits (97), Expect = 9e-07
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 69  RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           + +    GN + LTI  V+  D G Y+  A N+ G  ++ + L+
Sbjct: 47  KYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 90

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.1 bits (103), Expect = 1e-07
 Identities = 20/61 (32%), Positives = 26/61 (42%)

Query: 4  MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
          MSW +D   IE    D        +   LTI+NV   D   Y C+A+N  G     + L 
Sbjct: 37 MSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 96

Query: 64 V 64
          V
Sbjct: 97 V 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.5 bits (86), Expect = 3e-05
 Identities = 13/45 (28%), Positives = 18/45 (40%)

Query: 68  DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           D        +   LTI+NV   D   Y C+A+N  G     + L 
Sbjct: 52  DDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 96

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.5 bits (101), Expect = 3e-07
 Identities = 10/41 (24%), Positives = 14/41 (34%)

Query: 28  NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSD 68
               L    V + D G Y C A N  G A +     +   +
Sbjct: 65  KSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 105

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 9e-06
 Identities = 21/98 (21%), Positives = 31/98 (31%), Gaps = 9/98 (9%)

Query: 10  TFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDR 69
           T  +  SV       T GN+  LT      +    YS   D          +    ++  
Sbjct: 7   TISVPSSV-------TIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSS 59

Query: 70  RLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 107
             ++       L    V + D G Y C A N  G A +
Sbjct: 60  FTIDP--KSGDLIFDPVTAFDSGEYYCQAQNGYGTAMR 95

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 4e-07
 Identities = 15/59 (25%), Positives = 24/59 (40%)

Query: 4  MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 62
          + W+++   I P    R  +   G KH L I+     D   YS +       AK  ++L
Sbjct: 31 VKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKLSVDL 89

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 2e-06
 Identities = 14/55 (25%), Positives = 20/55 (36%)

Query: 57  KKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
           K   E+      R  +   G KH L I+     D   YS +       AK  ++L
Sbjct: 35  KNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKLSVDL 89

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 4e-07
 Identities = 8/47 (17%), Positives = 13/47 (27%)

Query: 18  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            +     +R     + I   +    GNY C             +L V
Sbjct: 56  KETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV 102

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 4e-06
 Identities = 7/46 (15%), Positives = 12/46 (26%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
            +     +R     + I   +    GNY C             +L 
Sbjct: 56  KETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 101

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.1 bits (100), Expect = 5e-07
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 23  METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVS 67
                 K  L I+NV+ +D G Y+C   ++  + +  +EL V   
Sbjct: 74  ESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDP 118

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.6 bits (91), Expect = 1e-05
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 72  METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
                 K  L I+NV+ +D G Y+C   ++  + +  +EL
Sbjct: 74  ESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL 113

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.1 bits (98), Expect = 5e-07
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 14 EPSVSDRRLMETRGNKH-----TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           P +  R+L  ++ +K       L I+NV   D G Y C A+N  GR      + +
Sbjct: 34 VPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII 89

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.4 bits (91), Expect = 7e-06
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 72  METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
            +   ++  L I+NV   D G Y C A+N  GR      + 
Sbjct: 48  SKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRII 88

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 7e-07
 Identities = 8/72 (11%), Positives = 22/72 (30%), Gaps = 2/72 (2%)

Query: 3   MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 62
            +  ++    +      +     +    T      +     N+SC+A  +L        +
Sbjct: 36  TLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSR--GGNI 93

Query: 63  SVSVSDRRLMET 74
               S  +++E 
Sbjct: 94  FHKHSAPKMLEI 105

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-06
 Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 1/63 (1%)

Query: 3   MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDF-GNYSCVADNNLGRAKKYME 61
                 +   +      R  + +   +  L I+N+      G Y C   ++ G  +  + 
Sbjct: 38  YKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIIT 97

Query: 62  LSV 64
           L V
Sbjct: 98  LRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 4e-05
 Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDF-GNYSCVADNNLGRAKKYMEL 111
             R  + +   +  L I+N+      G Y C   ++ G  +  + L
Sbjct: 53  ESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 98

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 2e-06
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 8   QDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            D       +    +  T      L I+NV   D G Y+C+A N++G +     L+V
Sbjct: 52  PDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 2e-05
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 72  METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
             T      L I+NV   D G Y+C+A N++G +     L+
Sbjct: 67  NTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLT 107

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 2e-06
 Identities = 8/42 (19%), Positives = 15/42 (35%)

Query: 23 METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
                   L +      + GNY+ +A N  G+A   +  + 
Sbjct: 56 ANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 97

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 1e-05
 Identities = 8/44 (18%), Positives = 17/44 (38%)

Query: 72  METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
                    L +      + GNY+ +A N  G+A   +  + ++
Sbjct: 56  ANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD 99

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 5e-06
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 3  MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYME 61
             W Q   + +  + + ++  +R    +  + N    D G Y C+     G     Y E
Sbjct: 33 DRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAE 92

Query: 62 LSV 64
          L V
Sbjct: 93 LVV 95

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 2e-05
 Identities = 7/39 (17%), Positives = 14/39 (35%)

Query: 67  SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
            + ++  +R    +  + N    D G Y C+     G  
Sbjct: 48  KEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVG 86

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 6e-06
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 30 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           T  I +VQ++D GNYS V +N+ G+ +    L++
Sbjct: 55 STFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 6e-05
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 79  HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
            T  I +VQ++D GNYS V +N+ G+ +    L+
Sbjct: 55  STFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 88

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 7e-06
 Identities = 13/37 (35%), Positives = 16/37 (43%)

Query: 28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
              LTI+NVQ +D G Y C   N     +    L V
Sbjct: 52 FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 88

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (83), Expect = 8e-05
 Identities = 12/36 (33%), Positives = 15/36 (41%)

Query: 77  NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
               LTI+NVQ +D G Y C   N     +    L 
Sbjct: 52  FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 87

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 7e-06
 Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 4  MSWYQDTFLIEPSVSDRRLMETRGNKH---TLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60
          + W+ +  ++  S      +    +      L + N    + G+Y+ +A N  G+ +K +
Sbjct: 33 LQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQI 92

Query: 61 ELSV 64
              
Sbjct: 93 SAHF 96

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 39.5 bits (91), Expect = 8e-06
 Identities = 15/59 (25%), Positives = 21/59 (35%)

Query: 6  WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
           +             ++        +LTI  V   D   Y+C A N+LG A    EL V
Sbjct: 41 MWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 36.0 bits (82), Expect = 1e-04
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 76  GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
               +LTI  V   D   Y+C A N+LG A    EL 
Sbjct: 62  EGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELL 98

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 9e-06
 Identities = 9/54 (16%), Positives = 23/54 (42%)

Query: 3  MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 56
           + W +D  +++        +  +     L++K+V+ +D G Y C  ++     
Sbjct: 27 DIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETE 80

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 6e-05
 Identities = 8/49 (16%), Positives = 18/49 (36%)

Query: 57  KKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
           K    +         +  +     L++K+V+ +D G Y C  ++     
Sbjct: 32  KDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETE 80

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 1e-05
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 3/37 (8%)

Query: 30 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV 66
            L +++VQ  D GNYSC            + L V V
Sbjct: 60 RRLLLRSVQLHDSGNYSCYRAGRPAGT---VHLLVDV 93

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 4e-05
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 79  HTLTIKNVQSTDFGNYSCVADNNLGR 104
             L +++VQ  D GNYSC        
Sbjct: 60  RRLLLRSVQLHDSGNYSCYRAGRPAG 85

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 1e-05
 Identities = 10/46 (21%), Positives = 14/46 (30%)

Query: 19 DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
                   N   L I++V   D  +    A N  G    +  L V
Sbjct: 50 RIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 95

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 1e-04
 Identities = 9/45 (20%), Positives = 13/45 (28%)

Query: 68  DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
                    N   L I++V   D  +    A N  G    +  L 
Sbjct: 50  RIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLL 94

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.7 bits (89), Expect = 1e-05
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 23 METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV 66
               + + L I+ ++ TD G Y C           + ++ V V
Sbjct: 49 RFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 92

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.4 bits (75), Expect = 0.001
 Identities = 7/40 (17%), Positives = 15/40 (37%)

Query: 72  METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
                + + L I+ ++ TD G Y C           + ++
Sbjct: 49  RFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDI 88

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 2e-05
 Identities = 9/39 (23%), Positives = 15/39 (38%)

Query: 30  HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSD 68
             L    + ++D G YSC A N  G       + +   +
Sbjct: 66  GELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE 104

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (74), Expect = 0.002
 Identities = 9/29 (31%), Positives = 12/29 (41%)

Query: 79  HTLTIKNVQSTDFGNYSCVADNNLGRAKK 107
             L    + ++D G YSC A N  G    
Sbjct: 66  GELVFDPLSASDTGEYSCEARNGYGTPMT 94

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 2e-05
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 23  METRGNKHTLTIKNVQ-STDFGNYSCVADNNLGRAKKYMELSVSVSDR 69
               G   TLTI N+  +     Y+C A N+ G   + + L    S+ 
Sbjct: 62  STEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM 109

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (79), Expect = 5e-04
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 72  METRGNKHTLTIKNVQ-STDFGNYSCVADNNLGRAKKYMELS 112
               G   TLTI N+  +     Y+C A N+ G   + + L 
Sbjct: 62  STEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 103

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 2e-05
 Identities = 7/65 (10%), Positives = 17/65 (26%), Gaps = 5/65 (7%)

Query: 1  MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60
             +   +           R        + T T+   +      +SC  + +L      +
Sbjct: 36 QLTVVLLRG-----EKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLEL 90

Query: 61 ELSVS 65
            + S
Sbjct: 91 FENTS 95

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 9e-04
 Identities = 5/24 (20%), Positives = 10/24 (41%)

Query: 80  TLTIKNVQSTDFGNYSCVADNNLG 103
           T T+   +      +SC  + +L 
Sbjct: 61  TTTVLVRRDHHGAQFSCRTELDLR 84

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.5 bits (86), Expect = 3e-05
 Identities = 12/35 (34%), Positives = 15/35 (42%)

Query: 30 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
            L    +   D G Y CVA+N  G      EL+V
Sbjct: 53 GELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 34.5 bits (78), Expect = 4e-04
 Identities = 11/34 (32%), Positives = 14/34 (41%)

Query: 79  HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
             L    +   D G Y CVA+N  G      EL+
Sbjct: 53  GELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 86

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 4e-05
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 2/63 (3%)

Query: 4  MSWYQDTFLIEPSVSDRR--LMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 61
          + W  +   +  S         E   ++  L        + GNY+ +A N LG A + + 
Sbjct: 34 LHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTIN 93

Query: 62 LSV 64
             
Sbjct: 94 GHF 96

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 1e-04
 Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 6/90 (6%)

Query: 32  LTIKNVQSTDFGNYSCVADNN------LGRAKKYMELSVSVSDRRLMETRGNKHTLTIKN 85
           ++++  +         V   N           + +  S  +      E   ++  L    
Sbjct: 9   VSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNK 68

Query: 86  VQSTDFGNYSCVADNNLGRAKKYMELSELE 115
               + GNY+ +A N LG A + +    L+
Sbjct: 69  PTHYNNGNYTLIAKNPLGTANQTINGHFLK 98

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 4e-05
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 14  EPSVSDRRLM---ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV 66
            P +  R      + +    ++ + N+Q +D G Y C      G A K + L V V
Sbjct: 69  YPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 124

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (75), Expect = 0.002
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 73  ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
           + +    ++ + N+Q +D G Y C      G A K + L 
Sbjct: 82  DLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLV 121

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (84), Expect = 7e-05
 Identities = 8/44 (18%), Positives = 18/44 (40%)

Query: 23  METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV 66
                +   +T  +V   D G Y+C+     G+    + + ++V
Sbjct: 58  DRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTV 101

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.8 bits (73), Expect = 0.003
 Identities = 7/34 (20%), Positives = 13/34 (38%)

Query: 72  METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
                +   +T  +V   D G Y+C+     G+ 
Sbjct: 58  DRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQN 91

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 2e-04
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 30  HTLTIKNVQSTDFG-NYSCVADNNLGRAKKYMELSVSV 66
             L I  ++S  +   ++C A N  G    Y++L   V
Sbjct: 70  TVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 107

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (76), Expect = 0.001
 Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 79  HTLTIKNVQSTDFG-NYSCVADNNLGRAKKYMEL 111
             L I  ++S  +   ++C A N  G    Y++L
Sbjct: 70  TVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 103

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 3e-04
 Identities = 12/77 (15%), Positives = 22/77 (28%)

Query: 30  HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQST 89
             +T     +            +     +  E     S +  +       +LTI N+ S+
Sbjct: 11  GNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSS 70

Query: 90  DFGNYSCVADNNLGRAK 106
           D   Y   + N     K
Sbjct: 71  DEDEYEMESPNITDTMK 87

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 7e-04
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 6/66 (9%)

Query: 1  MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60
            +       F    S  +R  ++      +LTI N+ S+D   Y   + N     K   
Sbjct: 33 DKVAELENSEFRAFSSFKNRVYLD--TVSGSLTIYNLTSSDEDEYEMESPNITDTMK--- 87

Query: 61 ELSVSV 66
             + V
Sbjct: 88 -FFLYV 92

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 35.0 bits (79), Expect = 3e-04
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 30 HTLTIKNVQSTDFGNYSCVADNNLGRA 56
           +L     Q++D G+Y C A+   G A
Sbjct: 58 GSLVFLRPQASDEGHYQCFAETPAGVA 84

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 35.0 bits (79), Expect = 3e-04
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 79  HTLTIKNVQSTDFGNYSCVADNNLGRA 105
            +L     Q++D G+Y C A+   G A
Sbjct: 58  GSLVFLRPQASDEGHYQCFAETPAGVA 84

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.1 bits (80), Expect = 3e-04
 Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 4/68 (5%)

Query: 1  MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60
            +++ ++         S    +   G    L IKN+   D G Y+    +  G      
Sbjct: 35 STLVAEFKRKM-KPFLKSGAFEILANG---DLKIKNLTRDDSGTYNVTVYSTNGTRILNK 90

Query: 61 ELSVSVSD 68
           L + + +
Sbjct: 91 ALDLRILE 98

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.5 bits (76), Expect = 0.001
 Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 2/74 (2%)

Query: 31  TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTD 90
            L I N Q TD  +       +   A+   ++   +              L IKN+   D
Sbjct: 14  NLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGA--FEILANGDLKIKNLTRDD 71

Query: 91  FGNYSCVADNNLGR 104
            G Y+    +  G 
Sbjct: 72  SGTYNVTVYSTNGT 85

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (76), Expect = 0.001
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 5  SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
          +WY+D    +  VS  +      +K  L     +  D G+Y CV  N+    +  +    
Sbjct: 36 TWYKDDS--KTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKF 93

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.7 bits (76), Expect = 0.001
 Identities = 8/45 (17%), Positives = 20/45 (44%)

Query: 24  ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSD 68
           +      ++ I N+  +D G ++C   N      K  ++++ V +
Sbjct: 75  DPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFE 119

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 33.3 bits (75), Expect = 0.002
 Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 5/64 (7%)

Query: 46  SCVADNN---LGRAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL 102
           +C A  N     R K          D R          +    V++ D G+Y CVA N  
Sbjct: 28  TCRARANPPATYRWKMNGTELKMGPDSRYRLV--AGDLVISNPVKAKDAGSYQCVATNAR 85

Query: 103 GRAK 106
           G   
Sbjct: 86  GTVV 89

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 33.0 bits (74), Expect = 0.002
 Identities = 9/48 (18%), Positives = 13/48 (27%)

Query: 10 TFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 57
                                +    V++ D G+Y CVA N  G   
Sbjct: 42 KMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVV 89

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 33.1 bits (74), Expect = 0.002
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 27  GNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-----KYMELSVSVSD 68
                L I   +++D GNYSC A +++         K+ +LS++  D
Sbjct: 58  QTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAED 104

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	115
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.44
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.43
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.42
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.41
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.4
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.4
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.4
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.37
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.36
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.35
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.35
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.34
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.34
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.32
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.31
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.31
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.28
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.28
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.27
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.27
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.27
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.25
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.25
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.25
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.24
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.24
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.24
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.23
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.23
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.23
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.22
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.22
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.22
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.22
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.22
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.22
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.21
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.21
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.21
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.2
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.17
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.17
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.15
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.14
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.13
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.13
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.13
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.13
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.13
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.12
d2avga1	110	Cardiac myosin binding protein C, different domain	99.11
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.11
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.11
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.1
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.1
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.09
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.09
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.09
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.09
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.09
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.07
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.07
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.05
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.05
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.04
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.04
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.04
d2avga1	110	Cardiac myosin binding protein C, different domain	99.04
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.03
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.99
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.98
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.98
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.98
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	98.97
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.97
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.93
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.93
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.92
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.92
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.92
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.92
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.91
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.91
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.91
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.88
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.87
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.85
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.83
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.83
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.81
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.79
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.78
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.78
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.77
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.77
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.75
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.75
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.74
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.69
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.67
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.66
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.61
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.6
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.59
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.58
d1gxea_	130	Cardiac myosin binding protein C, different domain	98.57
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.57
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.54
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.51
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.51
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.48
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.48
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.48
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.47
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.46
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.4
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.4
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.35
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.31
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.25
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.08
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.04
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	97.97
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.92
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	97.9
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	97.85
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	97.74
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.71
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.71
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	97.7
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.69
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.65
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	97.64
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	97.63
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.57
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.54
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.54
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.52
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.52
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.52
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.51
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.49
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	97.47
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.42
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.41
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.38
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.36
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.35
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.34
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.29
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.28
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.28
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.27
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.26
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.26
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.25
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.24
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.23
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.23
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.23
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.21
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	97.21
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.2
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.19
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	97.17
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.17
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.17
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.15
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.13
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.13
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.13
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.12
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.12
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.11
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.1
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.1
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.1
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.1
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.1
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.09
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.06
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.05
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.04
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.03
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.03
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.02
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.01
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.01
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	96.99
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	96.99
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	96.96
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	96.91
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.9
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	96.89
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	96.89
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	96.89
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	96.88
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.88
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	96.88
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	96.87
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	96.87
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	96.84
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	96.84
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	96.81
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	96.81
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	96.8
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	96.79
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	96.78
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	96.77
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	96.75
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	96.75
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	96.75
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	96.73
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	96.72
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	96.69
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	96.69
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	96.68
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	96.67
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	96.64
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	96.63
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	96.62
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.61
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.55
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	96.55
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	96.55
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	96.55
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.54
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	96.54
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	96.54
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	96.53
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	96.52
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	96.5
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.5
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	96.49
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	96.49
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	96.49
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.45
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.44
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	96.44
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	96.43
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	96.42
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	96.42
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	96.42
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	96.41
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.4
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	96.4
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	96.39
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.39
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	96.39
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	96.34
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	96.31
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	96.31
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	96.3
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	96.27
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	96.26
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	96.25
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	96.25
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	96.24
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	96.24
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	96.24
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	96.23
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	96.21
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	96.2
d8faba1	103	Immunoglobulin light chain lambda variable domain,	96.18
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	96.16
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	96.16
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	96.15
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	96.15
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	96.14
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	96.14
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	96.09
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	96.07
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	96.05
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	96.05
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	96.01
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	96.0
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	96.0
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	95.98
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	95.96
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	95.96
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	95.95
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	95.9
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	95.9
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	95.81
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	95.8
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	95.79
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	95.77
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	95.76
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	95.74
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	95.73
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	95.71
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	95.7
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	95.69
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	95.67
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	95.59
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	95.58
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	95.52
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	95.51
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	95.48
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	95.45
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	95.45
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	95.41
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	95.38
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	95.38
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	95.33
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	95.3
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	95.24
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	95.21
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	95.19
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	95.16
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	95.12
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	95.06
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	95.04
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	94.95
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	94.94
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	94.93
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	94.84
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	94.78
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	94.77
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	94.76
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	94.63
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	94.63
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	94.62
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	94.49
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	94.46
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	94.46
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	94.39
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	94.38
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	94.24
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	94.22
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	94.13
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	94.01
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	93.98
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	93.96
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	93.73
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	93.66
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	93.66
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	93.6
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	93.54
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	93.47
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	93.45
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	93.35
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	93.34
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	93.31
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	93.22
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	93.22
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	93.2
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	93.2
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	93.18
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	93.17
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	93.05
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	93.03
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	93.02
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	93.01
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	92.97
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	92.93
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	92.9
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	92.87
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	92.86
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	92.82
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	92.81
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	92.8
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	92.75
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	92.69
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	92.67
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	92.66
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	92.65
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	92.56
d1xmwa2	66	CD3 epsilon chain ectodomain fragment {Sheep (Ovis	92.49
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	92.48
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	92.35
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	92.33
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	92.33
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	92.3
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	92.29
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	92.28
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	92.28
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	92.27
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	92.22
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	92.2
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	92.17
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	92.15
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	92.14
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	92.12
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	92.12
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	92.07
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	92.06
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	92.01
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	92.0
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	91.97
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	91.92
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	91.81
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	91.8
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	91.77
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	91.77
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	91.76
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	91.75
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	91.74
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	91.73
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	91.72
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	91.69
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	91.67
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	91.67
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	91.66
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	91.6
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	91.59
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	91.55
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	91.55
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	91.52
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	91.5
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	91.49
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	91.42
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	91.39
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	91.38
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	91.38
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	91.37
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	91.35
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	91.34
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	91.3
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	91.29
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	91.28
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	91.27
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	91.24
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	91.23
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	91.23
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	91.2
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	91.09
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	91.08
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	91.08
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	90.99
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	90.97
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	90.95
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	90.92
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	90.9
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	90.86
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	90.86
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	90.71
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	90.63
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	90.48
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	90.45
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	90.35
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	90.34
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	90.29
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	90.21
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	90.19
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	90.15
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	90.12
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	90.08
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	90.06
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	90.0
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	89.84
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	89.8
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	89.69
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	89.53
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	89.39
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	89.02
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	89.01
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	88.95
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	88.88
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	88.36
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	87.7
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	87.6
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	87.57
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	87.34
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	87.33
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	87.21
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	87.18
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	86.8
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	86.49
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	85.89
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	84.61
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	84.5
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	84.32
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	84.14
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	83.8
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	83.11
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	82.36
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	82.26
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	81.32

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=6.9e-14  Score=73.38  Aligned_cols=66  Identities=20%  Similarity=0.267  Sum_probs=56.2

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEecccCC
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSVSVSD   68 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g~~~~   68 (115)
                      .|.|+|+|++..+..  .+++.+........|.|.++..+|+|.|.|.+.|..|....  .|.|.+.|.+
T Consensus        29 ~p~v~W~k~~~~l~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~P~p   96 (101)
T d2cqva1          29 PITCTWMKFRKQIQE--SEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDP   96 (101)
T ss_dssp             SCEEEEEESSSBCCC--SSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSCSC
T ss_pred             CCEEEEEeCceeecc--CCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEEEEEEecCCC
Confidence            368999999999887  78887777778889999999999999999999999988877  6677665544

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.44  E-value=5.9e-14  Score=73.11  Aligned_cols=62  Identities=24%  Similarity=0.452  Sum_probs=49.9

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEec
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSV   64 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~g   64 (115)
                      .|.|+|++++..+..  ..++..........|.|.++..+|+|.|.|.+.|..|....  .|.|..
T Consensus        30 ~p~v~W~~~~~~l~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   93 (97)
T d1koaa1          30 PPVVTWHKDDRELKQ--SVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTR   93 (97)
T ss_dssp             CCEEEEEETTEECCS--BTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEECCEEEC
T ss_pred             CCEEEEEEeeeccce--eeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCCEEEEEEEEEEee
Confidence            368999999999876  66665555567788999999999999999999999887766  444443

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.43  E-value=8.4e-13  Score=69.22  Aligned_cols=56  Identities=27%  Similarity=0.401  Sum_probs=47.8

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEe-CCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETR-GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|.|+|+|.++..  ..++..... .....|.|.++..+|.|.|.|.+.|..|....
T Consensus        37 ~p~v~W~k~~~~i~~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   93 (102)
T d1fhga_          37 DPEVMWFKDDNPVKE--SRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATC   93 (102)
T ss_dssp             CCEEEEEETTEECCC--SSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCeEEEEeeeccccc--eeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEEEE
Confidence            378999999999987  777776544 34678999999999999999999999988776

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.42  E-value=2.3e-13  Score=70.03  Aligned_cols=57  Identities=30%  Similarity=0.494  Sum_probs=49.1

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY   59 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   59 (115)
                      .|.|.|+++|.++..  ..++..........|.|.++..+|+|.|.|.+.|..|.....
T Consensus        28 ~p~v~W~~~g~~l~~--~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   84 (91)
T d1tnna_          28 VPTVTWLRKGQVLST--SARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAE   84 (91)
T ss_dssp             CCCCEEESSSSTTCS--SSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEE
T ss_pred             CCeEEEEEeeccccc--ccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEEE
Confidence            478999999998877  667666667788999999999999999999999998887663

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.41  E-value=1.8e-12  Score=67.49  Aligned_cols=60  Identities=25%  Similarity=0.319  Sum_probs=48.5

Q ss_pred             CcceEEEECCEEeCCCCCCCEE-EEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRL-METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL   62 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v   62 (115)
                      .|.|+|+|++.++..  ..+.. .........|.|.++..+|.|.|.|.+.|..|....  .|.|
T Consensus        33 ~p~v~W~k~~~~i~~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~L~V   95 (98)
T d1g1ca_          33 DPECEWYKNGVKIER--SDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV   95 (98)
T ss_dssp             CCEEEEEETTEECCC--CSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCeEEEEeCceEEee--eeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEEEEEEEEEE
Confidence            378999999999987  66644 334456779999999999999999999999988776  4444

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.40  E-value=3.2e-13  Score=69.72  Aligned_cols=58  Identities=16%  Similarity=0.275  Sum_probs=50.2

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM   60 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~   60 (115)
                      .|.|.|++++..+..  ..++..........|.|.++..+|+|.|.|.+.|..|.....+
T Consensus        31 ~p~v~W~~~~~~i~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~   88 (93)
T d1wiua_          31 DPTATWTVGDSGAAL--APELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIF   88 (93)
T ss_dssp             SCEEEEECSSSSCBC--STTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CCeEEEEeeeeecee--eeeeeecccccceeeccccccccccEEEEEEEEECCCEEEEEE
Confidence            378999999998877  6777777777888999999999999999999999999887743

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.3e-13  Score=72.87  Aligned_cols=47  Identities=19%  Similarity=0.392  Sum_probs=41.4

Q ss_pred             cEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEeC
Q psy3272          69 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE  115 (115)
Q Consensus        69 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~~  115 (115)
                      ++..........|.|.++..+|+|.|+|.|.|..|..+..+.|.|++
T Consensus        84 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~d  130 (130)
T d1gxea_          84 RVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID  130 (130)
T ss_dssp             SCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred             eEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEEC
Confidence            44555666778899999999999999999999999999999999975

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.40  E-value=7.9e-13  Score=67.73  Aligned_cols=52  Identities=23%  Similarity=0.392  Sum_probs=44.4

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+|+|.++..  ..++...    ...|.|.++..+|+|.|.|.+.|..|....
T Consensus        30 ~p~v~W~k~g~~i~~--~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~   81 (89)
T d1cs6a4          30 RPAVRWLRDGQPLAS--QNRIEVS----GGELRFSKLVLEDSGMYQCVAENKHGTVYA   81 (89)
T ss_dssp             CCEEEEEETTEECCC--CSSEEEE----TTEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCEEEEEEeeccccc--cceeeee----eeeEEEEeecccCCEEEEEEEEeCCCEEEE
Confidence            478999999999987  6776553    457999999999999999999999987766

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.9e-12  Score=68.16  Aligned_cols=66  Identities=20%  Similarity=0.253  Sum_probs=49.1

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEE--eC--CeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE--ecccCC
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMET--RG--NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL--SVSVSD   68 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~--~~--~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v--~g~~~~   68 (115)
                      .|.|+|+|+|.++..  ..+.....  ..  ....|.|.+++.+|+|.|+|.+.|..|.....+.|  .+.|.|
T Consensus        31 ~P~v~W~~n~~~i~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~P~P  102 (105)
T d1wwca_          31 PPTLHWLHNGQPLRE--SKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFP  102 (105)
T ss_dssp             CCEEEEEETTEECCC--SSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCSCCCCC
T ss_pred             CCeEEEEeCccccCC--CcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEEEeCCCC
Confidence            479999999999876  55543322  11  24679999999999999999999999988875444  444443

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.8e-12  Score=66.88  Aligned_cols=60  Identities=17%  Similarity=0.273  Sum_probs=47.6

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeC-------CeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRG-------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL   62 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v   62 (115)
                      .|.|.|+++|.+|..  ..+.......       ....|.|.++..+|+|.|.|.+.|..|...+.+.|
T Consensus        29 ~P~v~W~~ng~~l~~--~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v   95 (107)
T d1he7a_          29 APSLRWLFNGSVLNE--TSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA   95 (107)
T ss_dssp             CCEEEEEETTEECCC--CSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCeEEEEEeeeEccC--ccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEEEE
Confidence            478999999999886  5554433221       23679999999999999999999999988886665

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4e-12  Score=65.19  Aligned_cols=61  Identities=16%  Similarity=0.356  Sum_probs=45.6

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCC--eEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEEe
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGN--KHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMELS   63 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v~   63 (115)
                      .|.|+|+|++.++..  ..+........  ...|.|.+++.+|+|.|.|.+.|..+...+   .|.|.
T Consensus        25 ~p~v~W~k~g~~l~~--~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~~~l~V~   90 (91)
T d1rhfa1          25 EPDIQWVKDGAVVQN--LDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE   90 (91)
T ss_dssp             SCCEEEEETTEECCS--SEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEE
T ss_pred             CceEEEEEeeccccc--ceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEEEEEEEEE
Confidence            378999999999876  55444333333  457999999999999999999998886543   55553

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=1.7e-12  Score=67.76  Aligned_cols=58  Identities=31%  Similarity=0.449  Sum_probs=43.8

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+++|..+..................|.|.++..+|+|.|.|.+.|..|....
T Consensus        34 ~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   91 (100)
T d1qz1a3          34 EPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDA   91 (100)
T ss_dssp             CCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCEEEE
Confidence            4789999999988652121122223345678999999999999999999999888776

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4.4e-12  Score=64.99  Aligned_cols=52  Identities=23%  Similarity=0.439  Sum_probs=42.7

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      |.+.|||++.++......++..........|.|.++..+|+|.|.|.+.+..
T Consensus        29 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   80 (90)
T d1x44a1          29 ANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQ   80 (90)
T ss_dssp             CCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTEE
T ss_pred             ceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecce
Confidence            6899999999887632445666666778899999999999999999997743

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.34  E-value=9.8e-13  Score=68.40  Aligned_cols=58  Identities=26%  Similarity=0.457  Sum_probs=43.8

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|.|+|+|..+......++..........|.|.+++.+|+|.|.|.+.|..|...+
T Consensus        32 ~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   89 (97)
T d1biha3          32 MGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK   89 (97)
T ss_dssp             CCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEE
T ss_pred             CCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEE
Confidence            3689999999998763233333223334568999999999999999999998876543

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.32  E-value=6.2e-12  Score=64.29  Aligned_cols=51  Identities=25%  Similarity=0.381  Sum_probs=41.7

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+|++.++..   .++...    ...|.|.++..+|+|.|.|.+.|..|....
T Consensus        32 ~p~v~W~~~~~~i~~---~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~   82 (89)
T d1biha4          32 APNVVWSHNAKPLSG---GRATVT----DSGLVIKGVKNGDKGYYGCRATNEHGDKYF   82 (89)
T ss_dssp             CCCCEEEETTEECCS---SSEEEE----TTEEEESSCCSTTCEEEEEEEEETTEEEEE
T ss_pred             CCEEEEEeCCccCcc---ccEEEe----eeeEEECCCChhhCEEEEEEEEECCCEEEE
Confidence            478999999999865   344332    335999999999999999999999988776

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.31  E-value=1.3e-12  Score=67.86  Aligned_cols=57  Identities=26%  Similarity=0.503  Sum_probs=43.8

Q ss_pred             CcceEEEECCEEeCCCCCCCE-EEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRR-LMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY   59 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   59 (115)
                      .|.|.|+|||.++..  ..++ ..........|.|.++..+|+|.|.|.+.|..|.....
T Consensus        34 ~p~i~W~kng~~l~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   91 (97)
T d3dara1          34 MPTMRWLKNGKEFKQ--EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT   91 (97)
T ss_dssp             CCEEEEEETTEECCG--GGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCEEEEEECCEeccc--cCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEE
Confidence            478999999999865  2221 11223345789999999999999999999999887763

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=6e-12  Score=66.06  Aligned_cols=60  Identities=17%  Similarity=0.359  Sum_probs=47.1

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEE--eC---CeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMET--RG---NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL   62 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~--~~---~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v   62 (115)
                      .|+|+|+|+|..+..  ..+.....  ..   ....|.|.+++.+|.|.|+|.+.|..|.....+.|
T Consensus        30 ~P~i~W~~~g~~l~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v   94 (103)
T d1wwbx_          30 KPALQWFYNGAILNE--SKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA   94 (103)
T ss_dssp             CCEEEEEETTEEECC--CSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             CCEEEEEECCEEeee--eeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEE
Confidence            479999999999986  55543322  11   23579999999999999999999999999885554

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.28  E-value=6e-13  Score=68.20  Aligned_cols=53  Identities=23%  Similarity=0.148  Sum_probs=45.9

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcc
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR   55 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   55 (115)
                      .|.+.|+|||.++..  .+++.+........|.|.++..+|+|.|+|.+.+..+.
T Consensus        29 ~~~v~W~k~g~~i~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~s   81 (89)
T d1tiua_          29 DVHGQWKLKGQPLTA--SPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKSA   81 (89)
T ss_dssp             SCCCBCCSSSCCCCS--SSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBCC
T ss_pred             CcEEEEEEeeeeccc--ceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEEE
Confidence            378999999999987  78888777778889999999999999999999875543

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.28  E-value=8e-12  Score=64.08  Aligned_cols=65  Identities=26%  Similarity=0.362  Sum_probs=50.7

Q ss_pred             CCCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC---------------CeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          38 QSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG---------------NKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      ...+.-.+.|.+             .|.|.|.+.|..++               ....|.|.++..+|+|.|+|.|.|..
T Consensus        12 ~~G~~~~l~C~~-------------~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   78 (91)
T d1tnna_          12 YEGESARFSCDT-------------DGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSE   78 (91)
T ss_dssp             SSSSCCCEEEEC-------------CCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSS
T ss_pred             eCCCcEEEEEEE-------------EEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECC
Confidence            344555677766             55666666665533               45689999999999999999999999


Q ss_pred             cceeeEEEEEEeC
Q psy3272         103 GRAKKYMELSELE  115 (115)
Q Consensus       103 ~~~~~~~~l~v~~  115 (115)
                      |..+..+.|.|.+
T Consensus        79 G~~~~~~~l~V~e   91 (91)
T d1tnna_          79 GKQEAEFTLTIQK   91 (91)
T ss_dssp             CBCCEEEEEECCC
T ss_pred             CEEEEEEEEEEEC
Confidence            9999999998864

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.2e-11  Score=63.77  Aligned_cols=52  Identities=27%  Similarity=0.439  Sum_probs=42.3

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|.|+|||+|..+... ..++..........|.|.++..+|+|.|+|.+.+..
T Consensus        34 ~~~v~W~k~g~~i~~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~   85 (94)
T d1pd6a_          34 DAEVKWLKNGQEIQMS-GSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEK   85 (94)
T ss_dssp             SSCCEEEESSSEECCC-SSSSEEEEETTEEEEEECSCSSSSCEEEEEEETTEE
T ss_pred             CceEEEEEcCccceee-eeeEeeeccCCeEEeecCCCCceecEEEEEEEeeEE
Confidence            3789999999998651 345666666778899999999999999999997643

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=3.2e-11  Score=62.74  Aligned_cols=63  Identities=24%  Similarity=0.338  Sum_probs=51.4

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC-----------------CeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG-----------------NKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~-----------------~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ..+.-.+.|.+             .|.|.|.+.|.+++                 ....|.|.++..+|.|.|+|.|.|.
T Consensus        19 ~G~~v~l~C~~-------------~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   85 (100)
T d1qz1a3          19 LGQSVTLVCDA-------------DGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENK   85 (100)
T ss_dssp             SCCCEEEEEEE-------------EEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCCEEEEEEE-------------EEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEEC
Confidence            34555677776             67888888887644                 1247999999999999999999999


Q ss_pred             ccceeeEEEEEEe
Q psy3272         102 LGRAKKYMELSEL  114 (115)
Q Consensus       102 ~~~~~~~~~l~v~  114 (115)
                      .|..+..+.|.|.
T Consensus        86 ~G~~~~~~~l~V~   98 (100)
T d1qz1a3          86 AGEQDASIHLKVF   98 (100)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEE
Confidence            9999999999886

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.27  E-value=2.5e-11  Score=62.22  Aligned_cols=52  Identities=23%  Similarity=0.190  Sum_probs=45.9

Q ss_pred             ecccCCcEEEEEeCC---------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 SVSVSDRRLMETRGN---------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~---------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .|.|.|.+.|.+.+.         ...|.|.++..+|.|.|+|.|.|..|..+..+.|.|.
T Consensus        30 ~g~P~p~i~W~k~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          30 FGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             EEESCCEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEccCCEEEEEecccccceEeeeeeeEEEeCCCCccCCEEEEEEEEECCCEEEEEEEEEEE
Confidence            788999999987552         3489999999999999999999999999989888875

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.25  E-value=2e-11  Score=63.27  Aligned_cols=52  Identities=23%  Similarity=0.388  Sum_probs=45.3

Q ss_pred             ecccCCcEEEEEeCC----------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 SVSVSDRRLMETRGN----------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .|.|.|.+.|.+++.                ...|.|.++..+|.|.|+|.|.|..|..+..+.|.|+
T Consensus        30 ~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Vl   97 (97)
T d3dara1          30 GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV   97 (97)
T ss_dssp             EEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEEEEC
Confidence            788888899987652                2479999999999999999999999999999999874

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=1.7e-11  Score=63.41  Aligned_cols=57  Identities=18%  Similarity=0.445  Sum_probs=46.0

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMEL   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v   62 (115)
                      |.|+|++++..+..  ..+....  .....|.|.++..+|.|.|.|.+.|..+...+   .|.|
T Consensus        32 ~~v~W~~~~~~l~~--~~~~~~~--~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V   91 (96)
T d1l6za2          32 ANIQWLFNSQSLQL--TERMTLS--QNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI   91 (96)
T ss_dssp             CEEEEEETTEECCC--CTTEEEE--TTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEE
T ss_pred             CCEEEEEeeeeccc--ccceecc--CCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEE
Confidence            67999999999987  6666543  45678999999999999999999998776654   4554

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.8e-11  Score=61.37  Aligned_cols=63  Identities=19%  Similarity=0.149  Sum_probs=51.3

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC------------CeEEEEEeccCCCCCeeeEEEeecCcccee
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAK  106 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~  106 (115)
                      ..+.-...|.+             .|.|.|.+.|...+            ....|.|.++..+|.|.|+|.|.|..|..+
T Consensus        15 ~G~~v~l~C~~-------------~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~   81 (90)
T d1vcaa2          15 IGDSVSLTCST-------------TGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLE   81 (90)
T ss_dssp             TTSCEEEEEEE-------------ESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEE
T ss_pred             CCCEEEEEEec-------------cCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCEEE
Confidence            34455666766             67788888887643            345899999999999999999999999999


Q ss_pred             eEEEEEEe
Q psy3272         107 KYMELSEL  114 (115)
Q Consensus       107 ~~~~l~v~  114 (115)
                      ..+.|.|.
T Consensus        82 ~~~~v~V~   89 (90)
T d1vcaa2          82 KGIQVEIY   89 (90)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            99999885

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.1e-11  Score=63.90  Aligned_cols=55  Identities=16%  Similarity=0.241  Sum_probs=46.8

Q ss_pred             EEEecccCCcEEEEEeCC--------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          60 MELSVSVSDRRLMETRGN--------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        60 ~~v~g~~~~~~~~~~~~~--------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      +.+.|.|.|.+.|.+++.                    ...|.|.+++.+|.|.|+|.|.|..|..+..+.|.|.
T Consensus        23 ~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~   97 (103)
T d1wwbx_          23 FTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM   97 (103)
T ss_dssp             EEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECCS
T ss_pred             EEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEEEEE
Confidence            345889999999987542                    2369999999999999999999999999999988875

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.4e-11  Score=61.38  Aligned_cols=52  Identities=15%  Similarity=0.256  Sum_probs=46.2

Q ss_pred             ecccCCcEEEEEeCC-----eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 SVSVSDRRLMETRGN-----KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .|.|.|.+.|...+.     ...|.|.++..+|+|.|+|.|.|..|..+..+.|.|+
T Consensus        24 ~g~p~P~i~W~~~~~~~~~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~   80 (84)
T d2nxyb2          24 PPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL   80 (84)
T ss_dssp             CTTCCCEEEEECTTCCEEEESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEE
T ss_pred             EcCCchheEEEeecccceeeeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEEE
Confidence            789999999987653     3479999999999999999999999999999988886

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=7.6e-11  Score=61.45  Aligned_cols=39  Identities=26%  Similarity=0.459  Sum_probs=35.2

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEeC
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE  115 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~~  115 (115)
                      ....|.|.++..+|+|.|+|.|.|..|..+..+.|.|.+
T Consensus        54 ~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   92 (101)
T d2cqva1          54 NGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVD   92 (101)
T ss_dssp             SEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEEC
T ss_pred             ceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEEEEEEe
Confidence            455799999999999999999999999999999998863

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.23  E-value=8.6e-11  Score=61.32  Aligned_cols=63  Identities=24%  Similarity=0.270  Sum_probs=49.7

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC----------------CeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG----------------NKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~----------------~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      ..+.-.+.|.+             .|.|.|.+.|.+++                ....|.|.++..+|.|.|+|.|.|..
T Consensus        22 ~G~~~~l~C~~-------------~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   88 (102)
T d1fhga_          22 EGSAARFDCKV-------------EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSL   88 (102)
T ss_dssp             TTSCEEEEEEE-------------EEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             cCCcEEEEEEE-------------EeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECC
Confidence            34556677776             55666666666543                24579999999999999999999999


Q ss_pred             cceeeEEEEEEe
Q psy3272         103 GRAKKYMELSEL  114 (115)
Q Consensus       103 ~~~~~~~~l~v~  114 (115)
                      |..+..+.|.|.
T Consensus        89 G~~~~~~~L~V~  100 (102)
T d1fhga_          89 GEATCTAELLVE  100 (102)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             cEEEEEEEEEEE
Confidence            999999999885

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.23  E-value=5.6e-11  Score=60.62  Aligned_cols=62  Identities=19%  Similarity=0.201  Sum_probs=50.3

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCC----------eEEEEEeccCCCCCeeeEEEeecCccceeeE
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN----------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKY  108 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~  108 (115)
                      ..+.-...|.+             .|.|.|.+.|.+++.          ...|.|.++..+|.|.|+|.|.|..|.....
T Consensus        17 ~G~~~~l~C~~-------------~g~P~p~v~W~~~~~~i~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~   83 (89)
T d1biha4          17 QGQDVTIPCKV-------------TGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFE   83 (89)
T ss_dssp             TTSCEEEECEE-------------EEESCCCCEEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEEEEEE
T ss_pred             CCCeEEEEEEE-------------EEeCCCEEEEEeCCccCccccEEEeeeeEEECCCChhhCEEEEEEEEECCCEEEEE
Confidence            44555666665             788888888887652          1269999999999999999999999999888


Q ss_pred             EEEEE
Q psy3272         109 MELSE  113 (115)
Q Consensus       109 ~~l~v  113 (115)
                      +.|.|
T Consensus        84 ~~l~V   88 (89)
T d1biha4          84 TLVQV   88 (89)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88876

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.23  E-value=1e-10  Score=60.57  Aligned_cols=63  Identities=16%  Similarity=0.039  Sum_probs=49.0

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC----------------CeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG----------------NKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~----------------~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      ..+.-.+.|.+             .|.|.|.+.|++++                ....|.|.++..+|.|.|+|.|.|..
T Consensus        18 ~g~~v~l~c~v-------------~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~   84 (98)
T d1g1ca_          18 QGSDAHFRVRV-------------VGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIA   84 (98)
T ss_dssp             TTSCEEEEEEE-------------EEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CCCcEEEEEEE-------------EEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECC
Confidence            34455666666             56666666666543                34579999999999999999999999


Q ss_pred             cceeeEEEEEEe
Q psy3272         103 GRAKKYMELSEL  114 (115)
Q Consensus       103 ~~~~~~~~l~v~  114 (115)
                      |..+..+.|.|.
T Consensus        85 G~~~~~~~L~V~   96 (98)
T d1g1ca_          85 GETSSHAFLLVQ   96 (98)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             cEEEEEEEEEEE
Confidence            999988888885

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.1e-11  Score=65.03  Aligned_cols=50  Identities=24%  Similarity=0.400  Sum_probs=38.7

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcc
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR   55 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   55 (115)
                      .|.|+|+|||.++..  ..+....   ....|.|.++..+|+|.|+|.+.+..+.
T Consensus        34 ~P~i~W~kdg~~l~~--~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~~g   83 (103)
T d1iray2          34 LPKLQWYKDCKPLLL--DNIHFSG---VKDRLIVMNVAEKHRGNYTCHASYTYLG   83 (103)
T ss_dssp             CCCCEEEETTEECCC--CSSSEEE---ETTEEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             CCEEEEEECCccccC--CCcEEEe---cCCEEEEcccccccCcEEEEEEEECcCC
Confidence            379999999999976  4432222   1346999999999999999999876544

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=5.9e-11  Score=62.56  Aligned_cols=55  Identities=16%  Similarity=0.216  Sum_probs=46.6

Q ss_pred             EEEecccCCcEEEEEeCC----------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          60 MELSVSVSDRRLMETRGN----------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        60 ~~v~g~~~~~~~~~~~~~----------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      +.|.|.|.|.+.|.+++.                      ...|.|.++..+|.|.|+|.|.|..|...+.+.|.|+
T Consensus        22 ~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v~v~   98 (107)
T d1he7a_          22 FSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM   98 (107)
T ss_dssp             EEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             EEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEEEEEEE
Confidence            355889999999987552                      1369999999999999999999999999999888775

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=7.2e-11  Score=60.09  Aligned_cols=65  Identities=26%  Similarity=0.315  Sum_probs=51.9

Q ss_pred             CCCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCC----------eEEEEEeccCCCCCeeeEEEeecCccceee
Q psy3272          38 QSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN----------KHTLTIKNVQSTDFGNYSCVADNNLGRAKK  107 (115)
Q Consensus        38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~  107 (115)
                      ...+.-.+.|.+.            .|.|.+.+.|.+++.          ...|.|.++..+|+|.|+|.|.|..|..+.
T Consensus        15 ~~G~~~~l~C~~~------------~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~   82 (89)
T d1gl4b_          15 RPGADVTFICTAK------------SKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQG   82 (89)
T ss_dssp             CTTCCEEEEEEEE------------ESSSCCEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             eCCCcEEEEEEcc------------CCCCCCEEEEecCCceeeccccEeeceEEEEecCCcccCEEEEEEEEECCCEEEE
Confidence            4566677888874            356677778877542          237999999999999999999999999999


Q ss_pred             EEEEEEe
Q psy3272         108 YMELSEL  114 (115)
Q Consensus       108 ~~~l~v~  114 (115)
                      .+.|.|.
T Consensus        83 ~~~l~V~   89 (89)
T d1gl4b_          83 TATLHVQ   89 (89)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9888873

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.22  E-value=9.7e-11  Score=61.63  Aligned_cols=36  Identities=36%  Similarity=0.550  Sum_probs=33.4

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ..|.|.++..+|.|.|+|.|.|..|.....+.|.|+
T Consensus        74 ~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~Vl  109 (109)
T d2fdbp2          74 EVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL  109 (109)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EEEEECCCCHHHCeEEEEEEEECCCEEEEEEEEEEC
Confidence            479999999999999999999999999999999874

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.22  E-value=4.5e-11  Score=60.99  Aligned_cols=52  Identities=25%  Similarity=0.256  Sum_probs=45.1

Q ss_pred             ecccCCcEEEEEeCC-----------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 SVSVSDRRLMETRGN-----------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~-----------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .|.|.|.+.|.+++.           ...|.|.++..+|.|.|+|.|.|..|.....+.|.|.
T Consensus        26 ~g~P~p~v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          26 SGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ   88 (89)
T ss_dssp             EEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEcCCEEEEEEeeccccccceeeeeeeeEEEEeecccCCEEEEEEEEeCCCEEEEEEEEEEE
Confidence            788888888887652           2379999999999999999999999998888889886

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3e-11  Score=63.47  Aligned_cols=54  Identities=20%  Similarity=0.208  Sum_probs=45.7

Q ss_pred             EEecccCCcEEEEEeCC-------------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          61 ELSVSVSDRRLMETRGN-------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        61 ~v~g~~~~~~~~~~~~~-------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .|.|.|.|.+.|.+++.                   ...|.|.+++.+|.|.|+|.|.|..|..+..+.|.|.
T Consensus        25 ~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~   97 (105)
T d1wwca_          25 VVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL   97 (105)
T ss_dssp             EEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEEE
Confidence            45788888888887542                   2369999999999999999999999999999888875

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.21  E-value=5.3e-11  Score=61.15  Aligned_cols=52  Identities=15%  Similarity=0.199  Sum_probs=44.4

Q ss_pred             ecccCCcEEEEEeC---------------CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 SVSVSDRRLMETRG---------------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ~g~~~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .|.|.|.+.|.+++               ....|.|.++..+|.|.|+|.|.|..|..+..+.|.|.
T Consensus        27 ~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V~   93 (93)
T d1wiua_          27 IGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             ECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECCCEEEEEEEEEEC
Confidence            67778888887654               34589999999999999999999999999999988873

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=5.5e-11  Score=60.82  Aligned_cols=65  Identities=12%  Similarity=0.121  Sum_probs=50.3

Q ss_pred             CCCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEe----------CCeEEEEEeccCCCCCeeeEEEeecCccceee
Q psy3272          38 QSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETR----------GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK  107 (115)
Q Consensus        38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~----------~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~  107 (115)
                      ...+.-.+.|.+.            .|.|.+.+.|...          .....|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus        16 ~~G~~~~l~C~~~------------~g~p~p~v~W~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~   83 (90)
T d1gsma1          16 ALGASRQLTCRLA------------CADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQH   83 (90)
T ss_dssp             ETTCCEEEEEEEC------------CSSTTCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             EeCCcEEEEEEec------------CCCCccEEEEEEeeeeeeeeeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEE
Confidence            3566677888764            2445555556442          34568999999999999999999999999999


Q ss_pred             EEEEEEe
Q psy3272         108 YMELSEL  114 (115)
Q Consensus       108 ~~~l~v~  114 (115)
                      ++.|.|.
T Consensus        84 s~~l~Vy   90 (90)
T d1gsma1          84 TVQLLVY   90 (90)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
Confidence            9998874

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.21  E-value=3.6e-11  Score=62.27  Aligned_cols=63  Identities=24%  Similarity=0.299  Sum_probs=50.1

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC---------------CeEEEEEeccCCCCCeeeEEEeecCcc
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG---------------NKHTLTIKNVQSTDFGNYSCVADNNLG  103 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~y~C~~~n~~~  103 (115)
                      ..+.-.+.|.+             .|.|.|.+.|.+++               ....|.|.++..+|.|.|+|.|.|..|
T Consensus        15 ~G~~~~l~C~~-------------~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   81 (97)
T d1koaa1          15 EGQSANFYCRV-------------IASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYG   81 (97)
T ss_dssp             TTSCEEEEEEE-------------ECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTE
T ss_pred             CCCcEEEEEEE-------------EEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCC
Confidence            34455667766             66777777777644               345799999999999999999999999


Q ss_pred             ceeeEEEEEEe
Q psy3272         104 RAKKYMELSEL  114 (115)
Q Consensus       104 ~~~~~~~l~v~  114 (115)
                      ..+..+.|.|.
T Consensus        82 ~~~~~~~l~V~   92 (97)
T d1koaa1          82 TKEEIVFLNVT   92 (97)
T ss_dssp             EEEEEECCEEE
T ss_pred             EEEEEEEEEEe
Confidence            98888888875

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.20  E-value=7.5e-11  Score=61.01  Aligned_cols=55  Identities=27%  Similarity=0.460  Sum_probs=41.1

Q ss_pred             cceEEEE-CCEEeCCCCCCCEEEE-EeCCeEEEEEecCCCCCCeEEEEEeecCCccee
Q psy3272           2 GMMSWYQ-DTFLIEPSVSDRRLME-TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK   57 (115)
Q Consensus         2 p~v~W~~-~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~   57 (115)
                      |.|+|++ ++..+... ..++... .......|.|.++..+|+|.|.|.+.|..|...
T Consensus        31 ~~v~W~~~~g~~~~~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   87 (97)
T d1epfa1          31 KDISWFSPNGEKLSPN-QQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQS   87 (97)
T ss_dssp             CEEEEECTTSCEECCB-SSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEE
T ss_pred             CEEEEEEeeeeeeeec-cccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEE
Confidence            5899999 45555431 4454433 345678899999999999999999999887654

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=2.1e-11  Score=62.63  Aligned_cols=54  Identities=17%  Similarity=0.191  Sum_probs=39.8

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCccee
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK   57 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~   57 (115)
                      .|.|+|+|++..+......++..   .....|.|.++..+|+|.|.|.+.+..+...
T Consensus        30 ~p~v~W~~~~~~i~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~   83 (92)
T d1epfa2          30 PPTIIWKHKGRDVILKKDVRFIV---LSNNYLQIRGIKKTDEGTYRCEGRILARGEI   83 (92)
T ss_dssp             CCEEEEEETTEEGGGGCCTTEEE---CTTSCEEETTCCGGGCEEEEEEEEEGGGTEE
T ss_pred             CCeEEEEEcCcccccccceeeee---eeeeeEEECCCCHHhCEEEEEEEEECcCCEE
Confidence            47899999999887622233322   2345699999999999999999998655443

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.17  E-value=1.6e-11  Score=62.97  Aligned_cols=50  Identities=26%  Similarity=0.335  Sum_probs=38.9

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|.|+|++.....  .      .......|.|.++..+|+|.|.|.+.|..|....
T Consensus        34 ~p~i~W~k~~~~~~~--~------~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   83 (91)
T d1cs6a3          34 VPQIKWRKLDGSQTS--K------WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTY   83 (91)
T ss_dssp             CCEEEEEECCSCCSC--C------CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCEEEEEecccccce--E------eeeeeeEEEeCCCCccCCEEEEEEEEECCCEEEE
Confidence            478999997654433  1      1123567999999999999999999999988766

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=3.6e-11  Score=61.23  Aligned_cols=51  Identities=27%  Similarity=0.348  Sum_probs=40.3

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY   59 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   59 (115)
                      |.|.|+|++..+..  ... ..    ....|+|.++..+|+|.|.|.+.|..|.....
T Consensus        33 ~~v~W~k~~~~~~~--~~~-~~----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~   83 (89)
T d1gl4b_          33 YTLVWTRLHNGKLP--SRA-MD----FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGT   83 (89)
T ss_dssp             CEEEEEEGGGBCCC--TTE-EE----ETTEEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             CEEEEecCCceeec--ccc-Ee----eceEEEEecCCcccCEEEEEEEEECCCEEEEE
Confidence            68999999887654  322 11    24579999999999999999999999887763

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.14  E-value=3.2e-11  Score=62.05  Aligned_cols=53  Identities=25%  Similarity=0.384  Sum_probs=41.2

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|+|+++|..+..  ...... .......|.|.++..+|+|.|.|.+.|..|...+
T Consensus        34 ~v~W~~~g~~l~~--~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~s   86 (94)
T d1biha1          34 KYSWKKDGKSYNW--QEHNAA-LRKDEGSLVFLRPQASDEGHYQCFAETPAGVASS   86 (94)
T ss_dssp             EEEEEESSSBCCT--TTTTEE-ECTTSCCEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             EEEEEeeeeeeee--ecceee-ecccceEEEEeccChhcCeEEEEEEEeCCCEEEE
Confidence            6899999998875  332221 2344568999999999999999999999887654

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=9.3e-11  Score=59.32  Aligned_cols=46  Identities=22%  Similarity=0.280  Sum_probs=35.1

Q ss_pred             c-ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           2 G-MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         2 p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      | +|+|+|||.++..  ..         ...+.|.....+|+|.|.|.+.|..|...+
T Consensus        31 P~~i~W~k~g~~i~~--~~---------~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S   77 (85)
T d1rhfa2          31 PVTIVWWRGTTKIGG--PA---------PSPSVLNVTGVTQSTMFSCEAHNLKGLASS   77 (85)
T ss_dssp             CCEEEEEETTEECSC--SE---------ESSEEEEECCCSSCEEEEEEEEETTEEEEC
T ss_pred             ceEEEEEECCEECCC--CC---------CcceEEecCCccccEEEEEEEEcCCCcEEE
Confidence            5 7999999998876  21         233456667778999999999999886544

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=4.8e-12  Score=66.22  Aligned_cols=56  Identities=23%  Similarity=0.370  Sum_probs=40.1

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY   59 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   59 (115)
                      |.|+|||++..+.........+..  ....|.|.+++.+|+|.|.|.+.|..+.....
T Consensus        33 ~~i~W~k~~~~~~~~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   88 (101)
T d1iray1          33 GTITWYKDDSKTPVSTEQASRIHQ--HKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK   88 (101)
T ss_dssp             SEEEEECSSTTSBCCCCTTSSEEE--ETTEEEETTCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             ceEEEEECCcccccccccceEEec--cCCEEEeccceecCCEEEEEEEECCCCeEEEE
Confidence            679999998655431122211111  24579999999999999999999988887763

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=6.7e-11  Score=60.50  Aligned_cols=52  Identities=13%  Similarity=0.248  Sum_probs=40.6

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM   60 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~   60 (115)
                      |.|+|++.+.++..       .........|+|.+++.+|+|.|.|.+.+..+....++
T Consensus        34 p~v~W~~~~~~~~~-------~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~   85 (90)
T d1gsma1          34 ASVQWRGLDTSLGA-------VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTV   85 (90)
T ss_dssp             CEEEEESSTTTTCC-------EEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cEEEEEEeeeeeee-------eeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEE
Confidence            68999987754432       12345678999999999999999999999887766643

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.13  E-value=1.6e-11  Score=64.61  Aligned_cols=55  Identities=25%  Similarity=0.432  Sum_probs=39.9

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      |.|+|+|++..+......+..  .......|.|.++..+|+|.|.|.+.|..+....
T Consensus        35 ~~v~W~k~g~~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~   89 (105)
T d1cs6a2          35 LSYRWLLNEFPNFIPADGRRF--VSQTTGNLYIAKTEASDLGNYSCFATSHIDFITK   89 (105)
T ss_dssp             CEEEEEESSTTCBCCCCSSEE--ECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEE
T ss_pred             CEEEEEEeeccccccccceee--eecCCCEEeecccccccCcEEEEEEEECCCCEEE
Confidence            689999999766542123222  2234567999999999999999999987665543

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.13  E-value=5.3e-11  Score=61.61  Aligned_cols=55  Identities=20%  Similarity=0.314  Sum_probs=41.7

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+++|..+......++..  . .+..|.|..+..+|+|.|.|.+.|..|...+
T Consensus        36 ~p~v~W~~ng~~i~~~~~~~~~~--~-~~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S   90 (97)
T d1cs6a1          36 PATYRWKMNGTELKMGPDSRYRL--V-AGDLVISNPVKAKDAGSYQCVATNARGTVVS   90 (97)
T ss_dssp             CCEEEEEETTEECCCSTTSSEEE--E-TTEEEEESCCHHHHCEEEEEEEEETTEEEEC
T ss_pred             CCEEEEEEeeeeccCCCCceEEe--e-eeeEEEEecccccCCEEEEEEEEECCCEEEE
Confidence            47899999999987632333322  2 3467888888899999999999999987644

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=6.3e-10  Score=57.72  Aligned_cols=45  Identities=20%  Similarity=0.398  Sum_probs=37.1

Q ss_pred             EEEEEeCCeEEEEEeccC-CCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          70 RLMETRGNKHTLTIKNVQ-STDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        70 ~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      +.....+....|.|.++. ..|+|.|+|.|.|..|..+..+.|.|+
T Consensus        56 ~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          56 FFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             EEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEeCCCEEEEEEeccccccCCEEEEEEEEECCCEEEEEEEEEEC
Confidence            333444456689999998 479999999999999999999999885

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=4.4e-10  Score=59.29  Aligned_cols=37  Identities=22%  Similarity=0.255  Sum_probs=34.6

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEeC
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE  115 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~~  115 (115)
                      ..|.|.++...|+|.|+|.|.|..|..+..+.|.|.+
T Consensus        72 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          72 FELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             EEEEEESCCTTCCEEEEEEEEETTEEEEEEEEEEEES
T ss_pred             EEEEEeccCHHHCcEEEEEEEECCCeEEEEEEEEEEe
Confidence            4799999999999999999999999999999999864

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.2e-10  Score=59.44  Aligned_cols=56  Identities=20%  Similarity=0.258  Sum_probs=43.0

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME   61 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~   61 (115)
                      .|.++|++++..+..  ..   .........|.|.++..+|+|.|.|.+.|..+.....+.
T Consensus        30 ~p~i~W~~~~~~~~~--~~---~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~   85 (90)
T d1vcaa2          30 SPFFSWRTQIDSPLN--GK---VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQ   85 (90)
T ss_dssp             SCEEEEEETTCCCCS--SE---EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEE
T ss_pred             CceEEEEecCcccee--ee---eeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEE
Confidence            478999998765433  21   123456788999999999999999999999988777443

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=7.6e-11  Score=61.74  Aligned_cols=57  Identities=18%  Similarity=0.221  Sum_probs=38.8

Q ss_pred             cceEEEECCEEeCCCCCCCE-EEEEe--CCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRR-LMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~-~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      |.|+|+|++..+........ .....  .....|.|.++..+|+|.|.|.+.|..|...+
T Consensus        34 P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~s   93 (104)
T d2aw2a1          34 PHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIES   93 (104)
T ss_dssp             CEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCeEEE
Confidence            78999998865432112222 21111  12356999999999999999999998876543

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.7e-11  Score=61.84  Aligned_cols=47  Identities=23%  Similarity=0.341  Sum_probs=36.5

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      ++|+|+|++.++..  ..+....   .+..|.|.+++.+|+|.|.|.+.+..
T Consensus        37 ~~i~W~k~~~~l~~--~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T d1n26a1          37 ATVHWVLRKPAAGS--HPSRWAG---MGRRLLLRSVQLHDSGNYSCYRAGRP   83 (93)
T ss_dssp             SEEEEEEECSSSSC--CCEEEEE---ESSEEEECSCCGGGCEEEEEESSSSC
T ss_pred             ceEEEEEccccccc--eeeEEec---CCCEEEECCCChhcCEEEEEEECCcc
Confidence            47999999988866  4443322   24579999999999999999998654

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.10  E-value=3.6e-10  Score=58.39  Aligned_cols=52  Identities=21%  Similarity=0.352  Sum_probs=42.0

Q ss_pred             ecccCCcEEEEEeCC-----------------eEEEEEeccCCCCCeeeEEEeecCcccee-eEEEEEEe
Q psy3272          63 SVSVSDRRLMETRGN-----------------KHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELSEL  114 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~-----------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~-~~~~l~v~  114 (115)
                      .|.|.|.+.|.+++.                 ...|.|.++..+|.|.|+|.|.|..|... ..+.|.|+
T Consensus        28 ~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s~~L~Vl   97 (97)
T d1biha3          28 GSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV   97 (97)
T ss_dssp             ECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEE
T ss_pred             EEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEEEEEEEEC
Confidence            677788888876542                 23799999999999999999999999854 47788874

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3e-10  Score=58.51  Aligned_cols=36  Identities=25%  Similarity=0.468  Sum_probs=31.1

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccce-eeEEEEEEe
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGRA-KKYMELSEL  114 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~-~~~~~l~v~  114 (115)
                      ..|.|.++..+|.|.|+|.|.|..|.. +..+.|.|+
T Consensus        60 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          60 ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK   96 (96)
T ss_dssp             EEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eEEEECCCCHHHCeEEEEEEEeCCCeEEEEEEEEEEC
Confidence            479999999999999999999999985 445788774

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.09  E-value=8.2e-11  Score=59.89  Aligned_cols=47  Identities=13%  Similarity=0.236  Sum_probs=37.6

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      +.++|||++..+..  .        .....|.|.++..+|+|.|.|.+.+..+...+
T Consensus        31 ~~~~W~k~g~~~~~--~--------~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S   77 (88)
T d2fcba2          31 VKVTFFQNGKSKKF--S--------RSDPNFSIPQANHSHSGDYHCTGNIGYTLYSS   77 (88)
T ss_dssp             EEEEEEETTEEEEE--E--------SSCCEEEETTCCGGGCEEEEEEEEETTEEEEC
T ss_pred             cEEEEEeecccccc--c--------ccccccccCccCHHHCCeEEEEEEeCCCCEEe
Confidence            47999999987754  1        23567899999999999999999998765543

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=4.3e-11  Score=60.44  Aligned_cols=53  Identities=11%  Similarity=0.092  Sum_probs=40.7

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE--EEEecc
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY--MELSVS   65 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~--~~v~g~   65 (115)
                      .|.|.|++++..+..            ....|.|.++..+|+|.|.|.+.|..+.....  |.|.|.
T Consensus        28 ~P~i~W~~~~~~~~~------------~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~~~   82 (84)
T d2nxyb2          28 SPSVQCRSPRGKNIQ------------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAF   82 (84)
T ss_dssp             CCEEEEECTTCCEEE------------ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEECC
T ss_pred             chheEEEeeccccee------------eeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEEEec
Confidence            489999997654432            24568999999999999999999998888773  444443

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=5.3e-11  Score=60.11  Aligned_cols=52  Identities=15%  Similarity=0.063  Sum_probs=44.5

Q ss_pred             ecccCCcEEEEEeCCeE--EEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          63 SVSVSDRRLMETRGNKH--TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .|.|.|.+.|.+++...  .+.+..++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus        29 ~G~P~P~v~W~k~g~~~~~~~~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~   82 (84)
T d2oz4a3          29 WGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL   82 (84)
T ss_dssp             EEESCCEEEEEETTTEECCTTSCEECCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEcCccEEEEEEeeccceeeeeeeccccCCCCEEEEEEEcCCCEEEEEEEEEEE
Confidence            88999999999877532  24566788999999999999999999999999886

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.8e-10  Score=57.55  Aligned_cols=63  Identities=16%  Similarity=0.164  Sum_probs=46.7

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCC-----------------eEEEEEeccCCCCCeeeEEEeecC
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN-----------------KHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~-----------------~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ..+.-.+.|.+             .|.|.|.+.|.+++.                 ...|.|.+++.+|.|.|+|.|.|.
T Consensus        10 ~G~~~~l~C~v-------------~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   76 (91)
T d1rhfa1          10 QGQPVKLNCSV-------------EGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDG   76 (91)
T ss_dssp             TTCCEEEEEEE-------------ESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSC
T ss_pred             CCCeEEEEEEE-------------EecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEEC
Confidence            34455666766             566677777766441                 237999999999999999999999


Q ss_pred             ccce-eeEEEEEEe
Q psy3272         102 LGRA-KKYMELSEL  114 (115)
Q Consensus       102 ~~~~-~~~~~l~v~  114 (115)
                      .|.. +..+.|.|.
T Consensus        77 ~G~~~S~~~~l~V~   90 (91)
T d1rhfa1          77 GETEISQPVWLTVE   90 (91)
T ss_dssp             TTCEECCCEEEEEE
T ss_pred             CCCEEEEEEEEEEE
Confidence            9974 567777764

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=8.8e-10  Score=58.34  Aligned_cols=36  Identities=17%  Similarity=0.184  Sum_probs=33.4

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ..|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus        68 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  103 (113)
T d2dava1          68 FEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH  103 (113)
T ss_dssp             EEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEE
T ss_pred             EEEEEccCCHHHCeEEEEEEEeCCCEEEEEEEEEEE
Confidence            469999999999999999999999999998888886

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.7e-10  Score=59.12  Aligned_cols=62  Identities=23%  Similarity=0.185  Sum_probs=50.1

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC-------------CeEEEEEeccCCCCCe-eeEEEeecCccc
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG-------------NKHTLTIKNVQSTDFG-NYSCVADNNLGR  104 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~-------------~~~~l~i~~~~~~d~G-~y~C~~~n~~~~  104 (115)
                      ..+.-...|.+             .|.|.|.+.|..++             ....|.|.++..+|.| .|+|.|.|..|.
T Consensus        16 ~G~~v~l~C~~-------------~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~   82 (92)
T d2ifga1          16 VGDDVLLRCQV-------------EGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGR   82 (92)
T ss_dssp             TTCCEEEEEEE-------------ECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEE
T ss_pred             CCCEEEEeeec-------------cCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCCE
Confidence            34455667766             77888888888764             2458999999999999 799999999999


Q ss_pred             eeeEEEEEE
Q psy3272         105 AKKYMELSE  113 (115)
Q Consensus       105 ~~~~~~l~v  113 (115)
                      .+..+.|.|
T Consensus        83 ~~~s~~l~V   91 (92)
T d2ifga1          83 AEVSVQVNV   91 (92)
T ss_dssp             CCEEECCCC
T ss_pred             EEEEEEEEE
Confidence            988887765

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=3.2e-10  Score=59.74  Aligned_cols=58  Identities=22%  Similarity=0.364  Sum_probs=40.7

Q ss_pred             CcceEEEECCEEeCCCCC------CCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVS------DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~------~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|+|++..+.....      .............|.|.+++.+|+|.|.|.+.|..|....
T Consensus        32 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~   95 (110)
T d1f97a2          32 PSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMR   95 (110)
T ss_dssp             CCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEE
T ss_pred             CCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCcEEE
Confidence            368999999987754211      0111222334567999999999999999999998876643

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.05  E-value=8e-11  Score=60.07  Aligned_cols=46  Identities=13%  Similarity=0.104  Sum_probs=36.2

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCccee
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK   57 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~   57 (115)
                      +.+.|||||..+..  .        .....|.|.+++.+|+|.|.|.+.+..+...
T Consensus        33 ~~~~W~kng~~~~~--~--------~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~   78 (89)
T d1fnla2          33 HKVTYLQNGKDRKY--F--------HHNSDFHIPKATLKDSGSYFCRGLVGSKNVS   78 (89)
T ss_dssp             EEEEEEETTEEEEE--E--------EECCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cEEEEEEcccccce--e--------ccccccEECccceeccceEEEEEEeCCCCeE
Confidence            47999999987754  1        1245789999999999999999998776544

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.7e-10  Score=57.53  Aligned_cols=52  Identities=17%  Similarity=0.232  Sum_probs=39.9

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE---EEEEe
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YMELS   63 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~---~~~v~   63 (115)
                      +.+.|||||..+..  ..        ....|.|.+++.+|+|.|.|++.+..+...+   .|.|.
T Consensus        31 ~~~~w~k~g~~~~~--~~--------~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~   85 (89)
T d1f2qa2          31 YKVIYYKDGEALKY--WY--------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI   85 (89)
T ss_dssp             EEEEEEETTEECCS--CC--------CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             eEEEEEEeeecccc--cc--------ccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEE
Confidence            37899999998865  22        2456899999999999999999987765443   45553

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.3e-09  Score=55.55  Aligned_cols=57  Identities=21%  Similarity=0.372  Sum_probs=43.4

Q ss_pred             ceEEEECCEEe----CCCCCCCEEEEEeCCeEEEEEecCC-CCCCeEEEEEeecCCcceeEE
Q psy3272           3 MMSWYQDTFLI----EPSVSDRRLMETRGNKHTLTIKNVQ-STDFGNYSCVADNNLGRAKKY   59 (115)
Q Consensus         3 ~v~W~~~~~~~----~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~~~   59 (115)
                      .++|+|++...    ......++..........|.|.++. .+|+|.|.|.+.|..|.....
T Consensus        34 ~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~   95 (101)
T d3b5ha1          34 DWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAI   95 (101)
T ss_dssp             EEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEE
T ss_pred             EEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEEEEEEEECCCEEEEE
Confidence            68999976422    2212455666677788899999998 579999999999999888773

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.04  E-value=4.7e-10  Score=57.41  Aligned_cols=63  Identities=16%  Similarity=0.300  Sum_probs=47.5

Q ss_pred             CCCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCC--------------eEEEEEeccCCCCCeeeEEEeecCcc
Q psy3272          38 QSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN--------------KHTLTIKNVQSTDFGNYSCVADNNLG  103 (115)
Q Consensus        38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~--------------~~~l~i~~~~~~d~G~y~C~~~n~~~  103 (115)
                      ...+.-...|.+             .|.|.|.+.|.+++.              ...|.|.++..+|+|.|+|.|.|..+
T Consensus        14 ~~G~~~~l~C~v-------------~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~   80 (92)
T d1epfa2          14 KEGEDAVIVCDV-------------VSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR   80 (92)
T ss_dssp             CTTSCEEECCEE-------------ECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred             eCCCcEEEEEEE-------------eecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcC
Confidence            445556666765             677888888887542              23699999999999999999999888


Q ss_pred             ceeeEEEEEE
Q psy3272         104 RAKKYMELSE  113 (115)
Q Consensus       104 ~~~~~~~l~v  113 (115)
                      .......+.|
T Consensus        81 ~~~~~~~i~V   90 (92)
T d1epfa2          81 GEINFKDIQV   90 (92)
T ss_dssp             TEEEEEEEEE
T ss_pred             CEEEEEEEEE
Confidence            7655555554

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=6.3e-10  Score=58.66  Aligned_cols=58  Identities=16%  Similarity=0.243  Sum_probs=40.5

Q ss_pred             cceEEEECCEEeCCC-CCCCEEEEE--e----CCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272           2 GMMSWYQDTFLIEPS-VSDRRLMET--R----GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY   59 (115)
Q Consensus         2 p~v~W~~~~~~~~~~-~~~~~~~~~--~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   59 (115)
                      |.|.|+|++...... ...++....  .    .....|.|.+++.+|+|.|.|.+.|..|.....
T Consensus        37 p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  101 (110)
T d2avga1          37 PVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSN  101 (110)
T ss_dssp             CEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEEEEETTEEEEEE
T ss_pred             CEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEEEEECCCeEEEE
Confidence            679999987543221 122232221  1    124579999999999999999999999888873

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=1.2e-09  Score=56.29  Aligned_cols=40  Identities=28%  Similarity=0.446  Sum_probs=34.2

Q ss_pred             CCeEEEEEeccCCCCCeeeEEEeecCccc-eeeEEEEEEeC
Q psy3272          76 GNKHTLTIKNVQSTDFGNYSCVADNNLGR-AKKYMELSELE  115 (115)
Q Consensus        76 ~~~~~l~i~~~~~~d~G~y~C~~~n~~~~-~~~~~~l~v~~  115 (115)
                      .....|.|.++..+|+|.|+|.|.|..|. .+.++.|.|.+
T Consensus        57 ~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~tv~l~V~q   97 (97)
T d1epfa1          57 DDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ   97 (97)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEC
T ss_pred             CcceEEEcccCchhhceEEEEEEEeCCCcEEEEEEEEEEEC
Confidence            34568999999999999999999999997 45678888864

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=3.7e-10  Score=57.84  Aligned_cols=59  Identities=19%  Similarity=0.191  Sum_probs=41.6

Q ss_pred             cceEEEECCEEeCCC----------CCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE
Q psy3272           2 GMMSWYQDTFLIEPS----------VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v   62 (115)
                      +.|.|++++..+...          ...+.  ........|+|.+++++|+|.|.|.+.+..+....++.|
T Consensus        24 ~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~~t~~~~l~V   92 (93)
T d1ccza1          24 KEVLWKKQKDKVAELENSEFRAFSSFKNRV--YLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYV   92 (93)
T ss_dssp             SCEEEEETTEEEEEEETTEEEECGGGTTSE--EECTTTCCEEECSCCGGGCEEEEEECTTCCSCEEEEEEE
T ss_pred             cEEEEEEeccccceeeecceeeCCCccceE--EEcCCeeEEEEEecChhhCEEEEEEEECCCcEEEEEEEE
Confidence            589999998765310          01111  122345689999999999999999998887766665554

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.3e-09  Score=56.09  Aligned_cols=64  Identities=22%  Similarity=0.324  Sum_probs=49.8

Q ss_pred             CCCCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCC---------------------------eEEEEEeccCCC
Q psy3272          37 VQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN---------------------------KHTLTIKNVQST   89 (115)
Q Consensus        37 ~~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~---------------------------~~~l~i~~~~~~   89 (115)
                      +...+.-.+.|.+             .|.|.|.+.|..++.                           ...|.|.+++.+
T Consensus        14 v~~G~~v~l~C~v-------------~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   80 (107)
T d1iray3          14 VDLGSQIQLICNV-------------TGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR   80 (107)
T ss_dssp             CCTTCCEEEEEEE-------------EECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGG
T ss_pred             EeCCCEEEEEEEe-------------ccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchH
Confidence            4556777888887             556666666665331                           237999999999


Q ss_pred             CCe-eeEEEeecCccceeeEEEEEE
Q psy3272          90 DFG-NYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        90 d~G-~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      |.| .|+|.|.|..|..+..+.|..
T Consensus        81 D~g~~Y~C~A~N~~G~~~~~i~L~~  105 (107)
T d1iray3          81 FYKHPFTCFAKNTHGIDAAYIQLIY  105 (107)
T ss_dssp             GGSSCEEEEEECSSCEEEEEEEEEC
T ss_pred             HCCcEEEEEEEeCCCeEEEEEEEEC
Confidence            999 599999999999999888763

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=6.1e-10  Score=58.00  Aligned_cols=52  Identities=17%  Similarity=0.128  Sum_probs=42.4

Q ss_pred             cccCCcEEEEEeCC---------------eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEeC
Q psy3272          64 VSVSDRRLMETRGN---------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE  115 (115)
Q Consensus        64 g~~~~~~~~~~~~~---------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~~  115 (115)
                      +.|.+.+.|.+++.               ...|.|.++..+|+|.|+|.+.|..|..+..+.|.|.+
T Consensus        29 ~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~L~V~~   95 (101)
T d1iray1          29 NEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVE   95 (101)
T ss_dssp             GGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEEEEEEEEEEe
Confidence            45566666665431               23799999999999999999999999999999999864

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.9e-09  Score=55.50  Aligned_cols=36  Identities=22%  Similarity=0.303  Sum_probs=30.9

Q ss_pred             EEEEeccCCCCCeeeEEEeecCcccee-eEEEEEEeC
Q psy3272          80 TLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELSELE  115 (115)
Q Consensus        80 ~l~i~~~~~~d~G~y~C~~~n~~~~~~-~~~~l~v~~  115 (115)
                      .|.|.++..+|.|.|+|.|.|..|... ..+.|.|.+
T Consensus        66 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          66 ILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EEEEccccHHHCCeEEEEEEcCCCeEEEEEEEEEEEE
Confidence            599999999999999999999999854 477777754

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.1e-09  Score=54.20  Aligned_cols=63  Identities=16%  Similarity=0.049  Sum_probs=46.9

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCC-cEEEEEeCC------eEEEEEeccCCCCCeeeEEEeecCccce-eeEEE
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSD-RRLMETRGN------KHTLTIKNVQSTDFGNYSCVADNNLGRA-KKYME  110 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~-~~~~~~~~~------~~~l~i~~~~~~d~G~y~C~~~n~~~~~-~~~~~  110 (115)
                      ..+.-.+.|.+             .|.|.| .+.|.+++.      ...+.|.....+|.|.|+|.|.|..|.. ++.+.
T Consensus        15 ~G~~~~l~C~~-------------~g~P~P~~i~W~k~g~~i~~~~~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~   81 (85)
T d1rhfa2          15 PNAPFQLSCEA-------------VGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTAT   81 (85)
T ss_dssp             TTCCEEEEEEE-------------ECSSSCCEEEEEETTEECSCSEESSEEEEECCCSSCEEEEEEEEETTEEEECCCEE
T ss_pred             CCCEEEEEEEE-------------ecCCcceEEEEEECCEECCCCCCcceEEecCCccccEEEEEEEEcCCCcEEEEEEE
Confidence            44556677776             778887 789988763      2346677777889999999999999974 45777


Q ss_pred             EEEe
Q psy3272         111 LSEL  114 (115)
Q Consensus       111 l~v~  114 (115)
                      |.|+
T Consensus        82 v~Vk   85 (85)
T d1rhfa2          82 VHLQ   85 (85)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            7663

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=1.1e-09  Score=57.58  Aligned_cols=66  Identities=21%  Similarity=0.295  Sum_probs=47.6

Q ss_pred             CCCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC-----------------------CeEEEEEeccCCCCCeee
Q psy3272          38 QSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG-----------------------NKHTLTIKNVQSTDFGNY   94 (115)
Q Consensus        38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~-----------------------~~~~l~i~~~~~~d~G~y   94 (115)
                      ...+.-...|.+.            .|.|.+.+.|.+++                       ....|.|.++..+|.|.|
T Consensus        15 ~~G~~v~L~C~~~------------~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y   82 (110)
T d1f97a2          15 TIGNRAVLTCSEH------------DGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEY   82 (110)
T ss_dssp             ETTSCEEEEEECS------------CCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEE
T ss_pred             ecCCeEEEEEEee------------cCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEE
Confidence            3455567777763            35666677776543                       122689999999999999


Q ss_pred             EEEeecCccceee--EEEEEEeC
Q psy3272          95 SCVADNNLGRAKK--YMELSELE  115 (115)
Q Consensus        95 ~C~~~n~~~~~~~--~~~l~v~~  115 (115)
                      +|.|.|..|...+  .+.|.|.+
T Consensus        83 ~C~a~N~~G~~~~s~~v~l~V~~  105 (110)
T d1f97a2          83 YCQAQNGYGTAMRSEAAHMDAVE  105 (110)
T ss_dssp             EEEEECSSSCCEECCCEEEEEES
T ss_pred             EEEEEECCCcEEEEEEEEEEEEe
Confidence            9999999997543  67777653

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.93  E-value=1.6e-09  Score=55.08  Aligned_cols=65  Identities=12%  Similarity=0.151  Sum_probs=46.9

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCC-------eEEEEEeccCCCCCeeeEEEeecCccce-eeEEE
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN-------KHTLTIKNVQSTDFGNYSCVADNNLGRA-KKYME  110 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~-------~~~l~i~~~~~~d~G~y~C~~~n~~~~~-~~~~~  110 (115)
                      +.|.=...|.+.            .+.|.+.+.|++++.       ...|.|.+++.+|+|.|+|.|.|..+.. +..+.
T Consensus        16 eG~~v~L~C~~~------------~~~p~~~~~W~kng~~~~~~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~   83 (89)
T d1fnla2          16 EEDPIHLRCHSW------------KNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVN   83 (89)
T ss_dssp             TTCCEEEEEEEC------------TTCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             cCCeEEEEEEec------------CCCCCcEEEEEEcccccceeccccccEECccceeccceEEEEEEeCCCCeEEeeEE
Confidence            455556777653            233444667766552       2368999999999999999999999874 45788


Q ss_pred             EEEeC
Q psy3272         111 LSELE  115 (115)
Q Consensus       111 l~v~~  115 (115)
                      |.|.|
T Consensus        84 itV~E   88 (89)
T d1fnla2          84 ITITQ   88 (89)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            88865

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.6e-10  Score=60.43  Aligned_cols=62  Identities=11%  Similarity=0.239  Sum_probs=42.2

Q ss_pred             cceEEEECCEEe-CCCCCCCEEEEE--e----CCeEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEEe
Q psy3272           2 GMMSWYQDTFLI-EPSVSDRRLMET--R----GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELS   63 (115)
Q Consensus         2 p~v~W~~~~~~~-~~~~~~~~~~~~--~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v~   63 (115)
                      |.|.|+|++... ......++....  .    .....|.|.+++.+|+|.|.|.+.|..|....  .|.|.
T Consensus        33 p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  103 (113)
T d2dava1          33 PTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH  103 (113)
T ss_dssp             CEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEE
T ss_pred             CEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEEEeCCCEEEEEEEEEEE
Confidence            689999987432 110122332221  1    12357999999999999999999999988777  66664

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=6.5e-10  Score=56.92  Aligned_cols=53  Identities=17%  Similarity=0.350  Sum_probs=39.1

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCccee
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK   57 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~   57 (115)
                      .|.+.|+++|..+... ..++..   .....|.|.++..+|+|.|.|.+.+..+...
T Consensus        25 ~~~v~W~~~g~~l~~~-~~~~~~---~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~   77 (92)
T d1olza1          25 LARVFWKFQNGVLKAE-SPKYGL---MGRKNLLIFNLSEGDSGVYQCLSEERVKNKT   77 (92)
T ss_dssp             TCEEEEEESSSBCCCC-SSSBCC---TTTTCEEECSCCGGGCEEEEEEEEEECSSSE
T ss_pred             CCceeeecCcccceee-eeeeec---ceeeEEEECCCCHHHCcEEEEEEEEcCCCEE
Confidence            3689999999887652 222221   2345799999999999999999998665443

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.92  E-value=1.2e-09  Score=57.37  Aligned_cols=30  Identities=37%  Similarity=0.628  Sum_probs=27.3

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      ...|.|.++..+|+|.|.|.+.|..|....
T Consensus        73 ~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~  102 (109)
T d2fdbp2          73 IEVLYIRNVTFEDAGEYTCLAGNSIGISFH  102 (109)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             cEEEEECCCCHHHCeEEEEEEEECCCEEEE
Confidence            467999999999999999999999988876

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.3e-10  Score=59.53  Aligned_cols=56  Identities=23%  Similarity=0.293  Sum_probs=41.6

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCe-EEEEEeecCCcceeEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFG-NYSCVADNNLGRAKKYM   60 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~~~~~~~~   60 (115)
                      .|.|+|++++..+..  ....  ........|.|.++..+|.| .|.|.+.|..|.....+
T Consensus        31 ~p~v~W~~~~~~~~~--~~~~--~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~   87 (92)
T d2ifga1          31 LEQAGWILTELEQSA--TVMK--SGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSV   87 (92)
T ss_dssp             CCCCCEEESCCCSSE--EECC--CCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEE
T ss_pred             CcEEEEEECCceeee--eeee--eeeccceeEEEccccccccceEEEEEEEcCCCEEEEEE
Confidence            478999999876543  1111  12245678999999999999 79999999998876643

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.92  E-value=2.7e-09  Score=54.08  Aligned_cols=64  Identities=11%  Similarity=0.137  Sum_probs=46.7

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC-------CeEEEEEeccCCCCCeeeEEEeecCccce-eeEEE
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG-------NKHTLTIKNVQSTDFGNYSCVADNNLGRA-KKYME  110 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~-------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~-~~~~~  110 (115)
                      +.+.=...|.+.            .+.|.+.+.|++++       ....|.|.++..+|+|.|+|.|.|..|.. +..+.
T Consensus        14 eG~~v~L~C~~~------------~~~p~~~~~W~k~g~~~~~~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~   81 (88)
T d2fcba2          14 EGETIVLRCHSW------------KDKPLVKVTFFQNGKSKKFSRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVT   81 (88)
T ss_dssp             TTCCEEEEEEEG------------GGCCCEEEEEEETTEEEEEESSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             cCCeEEEEEEec------------CCCCCcEEEEEeecccccccccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEE
Confidence            455566777763            23344567776654       23479999999999999999999999874 45777


Q ss_pred             EEEe
Q psy3272         111 LSEL  114 (115)
Q Consensus       111 l~v~  114 (115)
                      |.|.
T Consensus        82 l~V~   85 (88)
T d2fcba2          82 ITVQ   85 (88)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            8775

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=4.3e-09  Score=55.04  Aligned_cols=60  Identities=23%  Similarity=0.397  Sum_probs=43.7

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEE---Ee---------CCeEEEEEecCCCCCCe-EEEEEeecCCcceeEEEEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLME---TR---------GNKHTLTIKNVQSTDFG-NYSCVADNNLGRAKKYMEL   62 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~---~~---------~~~~~l~i~~~~~~d~G-~y~C~~~~~~~~~~~~~~v   62 (115)
                      .|.|+|+++|..+..  .......   ..         .....|.|.+++.+|.| .|.|.+.|..|.....+.+
T Consensus        31 ~p~i~W~~~g~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A~N~~G~~~~~i~L  103 (107)
T d1iray3          31 SDIAYWKWNGSVIDE--DDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL  103 (107)
T ss_dssp             TCEEEEEETTEECCT--TCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEEECSSCEEEEEEEE
T ss_pred             CCeEEEEECCccccc--ccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEEEeCCCeEEEEEEE
Confidence            378999999998865  3221111   10         01367999999999999 5999999999988875554

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.3e-10  Score=60.72  Aligned_cols=56  Identities=20%  Similarity=0.435  Sum_probs=40.5

Q ss_pred             CcceEEEECCEEeCCCCCCCEE-------EEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRL-------METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.+.|+|++..+..  ..+..       .........|.|.+++.+|.|.|.|.+.|..|....
T Consensus        32 ~p~v~W~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~   94 (104)
T d1nbqa2          32 PSEYTWFKDGIVMPT--NPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMT   94 (104)
T ss_dssp             CCEEEEEETTCCCCS--CSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEE
T ss_pred             CCEEEEEECCEEccC--CCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCceEE
Confidence            378999999987754  21111       011223467899999999999999999998887654

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1e-09  Score=57.27  Aligned_cols=33  Identities=24%  Similarity=0.498  Sum_probs=28.2

Q ss_pred             EEEEeccCCCCCeeeEEEeecCccceeeEEEEE
Q psy3272          80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS  112 (115)
Q Consensus        80 ~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~  112 (115)
                      .|.|.++..+|.|.|+|.|.|..|.....+.|.
T Consensus        69 ~L~I~~v~~~D~G~Y~C~a~n~~G~~~~~~~v~  101 (105)
T d1nbqa1          69 GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVK  101 (105)
T ss_dssp             EEECSCCCTTSCSEEEEEEEETTSSCEECCEEE
T ss_pred             eEEEecccccceeeEEEEEEECCCCEEEEEEEE
Confidence            699999999999999999999999966544443

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=4.8e-09  Score=54.37  Aligned_cols=34  Identities=24%  Similarity=0.466  Sum_probs=28.7

Q ss_pred             EEEEeccCCCCCeeeEEEeecCccceeeE--EEEEE
Q psy3272          80 TLTIKNVQSTDFGNYSCVADNNLGRAKKY--MELSE  113 (115)
Q Consensus        80 ~l~i~~~~~~d~G~y~C~~~n~~~~~~~~--~~l~v  113 (115)
                      .|.|.++..+|.|.|.|.+.|..|.....  +.|.|
T Consensus        66 tL~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v~V  101 (102)
T d1f97a1          66 GITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTV  101 (102)
T ss_dssp             EEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEE
T ss_pred             EEEEeECCccCCEEEEEEEEECCCCEEEEEEEEEEE
Confidence            69999999999999999999999985554  44544

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.3e-09  Score=53.91  Aligned_cols=44  Identities=18%  Similarity=0.230  Sum_probs=33.8

Q ss_pred             CcceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEE
Q psy3272           1 MGMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY   59 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   59 (115)
                      .|.|+|+|++..+..  ..             .+..++.+|+|.|.|.+.|..|.....
T Consensus        33 ~P~v~W~k~g~~~~~--~~-------------~~~~v~~~d~G~Y~C~A~N~~G~~~~~   76 (84)
T d2oz4a3          33 LPELKCLKDGTFPLP--IG-------------ESVTVTRDLEGTYLCRARSTQGEVTRE   76 (84)
T ss_dssp             CCEEEEEETTTEECC--TT-------------SCEECCGGGCEEEEEEEEETTEEEEEE
T ss_pred             ccEEEEEEeecccee--ee-------------eeeccccCCCCEEEEEEEcCCCEEEEE
Confidence            479999999886654  21             133567899999999999999877663

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=3.9e-09  Score=55.04  Aligned_cols=52  Identities=21%  Similarity=0.247  Sum_probs=40.1

Q ss_pred             ecccCCcEEEEEeCC------------eEEEEEeccCCCCCeeeEEEeecCccce----eeEEEEEEe
Q psy3272          63 SVSVSDRRLMETRGN------------KHTLTIKNVQSTDFGNYSCVADNNLGRA----KKYMELSEL  114 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~----~~~~~l~v~  114 (115)
                      .|.|.|.+.|.+++.            ...|.|.++..+|+|.|+|.|.|..+..    +..+.+.|.
T Consensus        30 ~~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~~~~vt~~i~~~v~   97 (103)
T d1iray2          30 ENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITL   97 (103)
T ss_dssp             TTTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             CCCCCCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCCEEEEEEEEEEEEEC
Confidence            578888899988652            1379999999999999999999988753    445555553

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.83  E-value=2.5e-09  Score=54.68  Aligned_cols=61  Identities=18%  Similarity=0.359  Sum_probs=43.2

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCC-cEEEEEeC--------------CeEEEEEeccCCCCCeeeEEEeecCcc
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSD-RRLMETRG--------------NKHTLTIKNVQSTDFGNYSCVADNNLG  103 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~-~~~~~~~~--------------~~~~l~i~~~~~~d~G~y~C~~~n~~~  103 (115)
                      ..+...+.|.+             .|.|.| .+.|..++              ....|.|.++..+|.|.|+|.|.|..|
T Consensus        16 ~g~~~~l~C~~-------------~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G   82 (94)
T d1biha1          16 ENNPTVLECII-------------EGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAG   82 (94)
T ss_dssp             TTSCEEECCCE-------------ESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCCeEEEEEEe-------------cCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCCC
Confidence            44556667776             455544 45666544              234799999999999999999999999


Q ss_pred             cee-eEEEEE
Q psy3272         104 RAK-KYMELS  112 (115)
Q Consensus       104 ~~~-~~~~l~  112 (115)
                      ... ..+.|.
T Consensus        83 ~~~s~~v~l~   92 (94)
T d1biha1          83 VASSRVISFR   92 (94)
T ss_dssp             EEECCCEEEE
T ss_pred             EEEEEEEEEE
Confidence            843 455554

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=7.4e-09  Score=52.85  Aligned_cols=30  Identities=23%  Similarity=0.495  Sum_probs=26.1

Q ss_pred             EEEEeccCCCCCeeeEEEeecCccceeeEE
Q psy3272          80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYM  109 (115)
Q Consensus        80 ~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~  109 (115)
                      .|.|.++..+|+|.|+|.|.|..+..+...
T Consensus        51 ~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~   80 (92)
T d1olza1          51 NLLIFNLSEGDSGVYQCLSEERVKNKTVFQ   80 (92)
T ss_dssp             CEEECSCCGGGCEEEEEEEEEECSSSEEEE
T ss_pred             EEEECCCCHHHCcEEEEEEEEcCCCEEEEE
Confidence            699999999999999999999988755433

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.81  E-value=4.3e-09  Score=54.17  Aligned_cols=50  Identities=22%  Similarity=0.346  Sum_probs=38.6

Q ss_pred             ecccCCcEEEEEeCC--------------eEEEEEeccCCCCCeeeEEEeecCccce-eeEEEEE
Q psy3272          63 SVSVSDRRLMETRGN--------------KHTLTIKNVQSTDFGNYSCVADNNLGRA-KKYMELS  112 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~--------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~-~~~~~l~  112 (115)
                      .|.|.|.+.|.+++.              ...|.|..+..+|.|.|+|.|.|..|.. ++.+.|.
T Consensus        32 ~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          32 RANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             EEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEE
T ss_pred             EEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEEECCCEEEEEEEEEe
Confidence            677888888877542              2357788888999999999999999985 3456553

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=8.7e-09  Score=52.26  Aligned_cols=65  Identities=14%  Similarity=0.152  Sum_probs=45.9

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeCC-------eEEEEEeccCCCCCeeeEEEeecCccce-eeEEE
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN-------KHTLTIKNVQSTDFGNYSCVADNNLGRA-KKYME  110 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~-------~~~l~i~~~~~~d~G~y~C~~~n~~~~~-~~~~~  110 (115)
                      +.+.=...|.+..            +.+...+.|++++.       ...|.|.+++.+|+|.|+|.|.|..+.. +..+.
T Consensus        14 eG~~v~L~C~~~~------------~~~~~~~~w~k~g~~~~~~~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~   81 (89)
T d1f2qa2          14 EGQPLFLRCHGWR------------NWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLN   81 (89)
T ss_dssp             TTSCEEEEEEEGG------------GCCEEEEEEEETTEECCSCCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             CCCEEEEEEEecC------------CCCCeEEEEEEeeeccccccccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEE
Confidence            4555667787632            22344566666542       3479999999999999999999988874 45777


Q ss_pred             EEEeC
Q psy3272         111 LSELE  115 (115)
Q Consensus       111 l~v~~  115 (115)
                      |.|.+
T Consensus        82 i~V~~   86 (89)
T d1f2qa2          82 ITVIK   86 (89)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            77753

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.78  E-value=4.5e-09  Score=52.88  Aligned_cols=48  Identities=15%  Similarity=0.327  Sum_probs=36.5

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL   62 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v   62 (115)
                      .+.|++||..+..            ....|.|..+..+|+|.|.|.+.+........|.|
T Consensus        36 ~~~w~~~g~~~~~------------~~~~l~i~~v~~~dsG~Y~C~a~ns~~S~~v~l~V   83 (85)
T d2fcba1          36 SIQWFHNGNLIPT------------HTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTV   83 (85)
T ss_dssp             CCEEEETTEECTT------------CCSSEEEEECCGGGCEEEEEECTTSBCCCCEEEEE
T ss_pred             EEEeecccccccc------------cccceEEeeccccCCcEEEEECCCCcccccEEEEE
Confidence            5789999988765            23468899999999999999998765444445544

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.78  E-value=7.2e-09  Score=51.99  Aligned_cols=48  Identities=19%  Similarity=0.387  Sum_probs=36.0

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL   62 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v   62 (115)
                      .++|++++..+..            ....|.|.++..+|+|.|.|.+.+........|.|
T Consensus        37 ~~~~~~~~~~~~~------------~~~~l~i~~~~~~d~G~Y~C~a~~s~~S~~v~L~V   84 (84)
T d1fnla1          37 STQWFHNESLISS------------QASSYFIDAATVNDSGEYRCQTNLSTLSDPVQLEV   84 (84)
T ss_dssp             CCEEEETTEEEES------------SCSEEEESSCCGGGCEEEEEECSSSCCCCCEEEEE
T ss_pred             EEEEeeeceeeee------------cceeeEecCCcccCCEEEEEEccCCCccccEEEEC
Confidence            4677888887654            34579999999999999999998765544445543

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.77  E-value=2.2e-09  Score=56.17  Aligned_cols=47  Identities=21%  Similarity=0.243  Sum_probs=36.6

Q ss_pred             ecccCCcEEEEEeCC---------------eEEEEEeccCCCCCeeeEEEeecCccceeeEE
Q psy3272          63 SVSVSDRRLMETRGN---------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM  109 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~---------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~  109 (115)
                      .|.|.+.+.|.+++.               ...|.|.++..+|.|.|+|.|.|..|..++.+
T Consensus        30 ~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~v   91 (105)
T d1cs6a2          30 PHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSV   91 (105)
T ss_dssp             SEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEE
T ss_pred             CCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEEE
Confidence            456666777766542               23699999999999999999999999866653

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.4e-09  Score=56.58  Aligned_cols=52  Identities=21%  Similarity=0.310  Sum_probs=40.2

Q ss_pred             ecccCCcEEEEEeCC----------------------eEEEEEeccCCCCCeeeEEEeecCccceee--EEEEEEe
Q psy3272          63 SVSVSDRRLMETRGN----------------------KHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMELSEL  114 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~----------------------~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~--~~~l~v~  114 (115)
                      .|.|.+.+.|.+++.                      ...|.|.++..+|.|.|+|.|.|..|...+  .+.|.|.
T Consensus        28 ~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v~v~v~  103 (104)
T d1nbqa2          28 DGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV  103 (104)
T ss_dssp             SCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred             cCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCceEEEEEEEEEEE
Confidence            467788888877542                      236899999999999999999999998655  4555554

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.75  E-value=1.1e-08  Score=52.53  Aligned_cols=37  Identities=22%  Similarity=0.463  Sum_probs=31.3

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCcccee-eEEEEEEe
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELSEL  114 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~-~~~~l~v~  114 (115)
                      ...|.|.++..+|.|.|+|.|.|..|... ..+.|.|.
T Consensus        55 ~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V~   92 (96)
T d1l6za2          55 NSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII   92 (96)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEEC
T ss_pred             ceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEEE
Confidence            34799999999999999999999999864 46777764

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=8.6e-10  Score=57.53  Aligned_cols=54  Identities=22%  Similarity=0.301  Sum_probs=37.4

Q ss_pred             CcceEEEECCEEeCCC----------CCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQDTFLIEPS----------VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|.|+|++..+...          ...+...    ....|.|.++..+|+|.|.|.+.+..|....
T Consensus        33 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~n~~G~~~~   96 (105)
T d1nbqa1          33 SPRVEWKFDQGDTTRLVCYNNKITASYEDRVTF----LPTGITFKSVTREDTGTYTCMVSEEGGNSYG   96 (105)
T ss_dssp             SEEEEEEEEETTEEEESEETTEECTTTTTTCEE----ETTEEECSCCCTTSCSEEEEEEEETTSSCEE
T ss_pred             CCeeEEEeeeeceeeeeeccceeeccccceeee----cCceEEEecccccceeeEEEEEEECCCCEEE
Confidence            3689999976533210          0111111    1247999999999999999999998877765

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.1e-08  Score=51.03  Aligned_cols=48  Identities=25%  Similarity=0.485  Sum_probs=36.0

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEEE
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL   62 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~v   62 (115)
                      .+.|++++..+..            ....|.|.+++.+|+|.|.|.+.+........|.|
T Consensus        33 ~~~~~~~~~~~~~------------~~~~l~i~~v~~~d~G~Y~C~a~~s~~S~~v~l~V   80 (82)
T d1f2qa1          33 STKWFHNGSLSEE------------TNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEV   80 (82)
T ss_dssp             CCEEEETTEECSC------------CSSEEEECSCCGGGCEEEEEECTTSSCCCCEEEEE
T ss_pred             ceeeeeeeeeeec------------ccceeEECCCChhhCCcEEEEecCCCCcccEEEEE
Confidence            4578888887765            24569999999999999999998765544444443

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.8e-09  Score=57.16  Aligned_cols=61  Identities=30%  Similarity=0.449  Sum_probs=43.6

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEE--eCC--eEEEEEecCCCCC-CeEEEEEeecCCcceeEEEEE
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMET--RGN--KHTLTIKNVQSTD-FGNYSCVADNNLGRAKKYMEL   62 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~--~~~--~~~l~i~~~~~~d-~G~y~C~~~~~~~~~~~~~~v   62 (115)
                      +.+.|++++..+......++....  ...  ...|.|.++..+| .|.|.|.+.|..|.....+.|
T Consensus        37 ~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G~~~~~~~L  102 (115)
T d2crya1          37 DRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRL  102 (115)
T ss_dssp             SEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEEEECC
T ss_pred             eEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEECCCeEEEEEEE
Confidence            468999999888652233443321  222  2579999999998 699999999999988874443

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=3.3e-09  Score=56.13  Aligned_cols=36  Identities=36%  Similarity=0.526  Sum_probs=32.4

Q ss_pred             EEEEEeccCCCC-CeeeEEEeecCccceeeEEEEEEe
Q psy3272          79 HTLTIKNVQSTD-FGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        79 ~~l~i~~~~~~d-~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ..|.|.++..+| .|.|+|.|.|..|..++.+.|.|.
T Consensus        69 s~L~I~~v~~~D~~G~Y~C~A~N~~G~~~~~~~L~V~  105 (115)
T d2crya1          69 STLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ  105 (115)
T ss_dssp             EEEECTTCCHHHHHSCEEEEEECSSCEEEEEECCCCS
T ss_pred             EEEEEeccchhcCCeEEEEEEEECCCeEEEEEEEEEE
Confidence            469999999999 699999999999999999888774

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=4.7e-08  Score=49.90  Aligned_cols=72  Identities=19%  Similarity=0.153  Sum_probs=43.4

Q ss_pred             CCCCCeEEEEEeecCCcceeEEEEEecc----cCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          38 QSTDFGNYSCVADNNLGRAKKYMELSVS----VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        38 ~~~d~G~y~C~~~~~~~~~~~~~~v~g~----~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      ...+.-.+.|.+.......  ...-.|.    ....+.+...+....|.|.++...|+|.|+|.|.|..    .+..|.|
T Consensus        19 ~~G~~v~l~c~v~~p~~~v--~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~----~s~~l~V   92 (94)
T d1pd6a_          19 SKGHKIRLTVELADHDAEV--KWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEK----CSTELFV   92 (94)
T ss_dssp             ETTSCEEEEEECSSSSSCC--EEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETTEE----ECCEEEE
T ss_pred             CcCCeEEEEEEECCCCceE--EEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEeeEE----EEEEEEE
Confidence            4566677888864321111  1111221    1123344445566789999999999999999997753    4455666


Q ss_pred             eC
Q psy3272         114 LE  115 (115)
Q Consensus       114 ~~  115 (115)
                      .|
T Consensus        93 ~E   94 (94)
T d1pd6a_          93 KE   94 (94)
T ss_dssp             EC
T ss_pred             EC
Confidence            54

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=8e-09  Score=52.99  Aligned_cols=30  Identities=20%  Similarity=0.398  Sum_probs=26.6

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      ...|.|.++..+|+|.|+|.+.|..|...+
T Consensus        59 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s   88 (96)
T d2c9aa1          59 IASFNVVNTTKRDAGKYRCMIRTEGGVGIS   88 (96)
T ss_dssp             EEEEEECSCCGGGCSEEEEEEEETTEEEEE
T ss_pred             ceEEEECCCCHHHCeEEEEEEEeCCCeEEE
Confidence            467999999999999999999999987654

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.60  E-value=5e-08  Score=50.24  Aligned_cols=52  Identities=21%  Similarity=0.231  Sum_probs=36.8

Q ss_pred             ceEEEECCEEeCCC--------CCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCccee
Q psy3272           3 MMSWYQDTFLIEPS--------VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK   57 (115)
Q Consensus         3 ~v~W~~~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~   57 (115)
                      .|.|++++..+..-        ...+..   .....+|+|.+++.+|+|.|.|.+.+..+...
T Consensus        28 ~I~W~~~~~~i~~~~~~~~~~~~~~~~~---~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~~~   87 (98)
T d1hnga1          28 EVRWERGSTLVAEFKRKMKPFLKSGAFE---ILANGDLKIKNLTRDDSGTYNVTVYSTNGTRI   87 (98)
T ss_dssp             EEEEEETTEEEEEEETTSCCEESSTTEE---ECTTSCEEESSCCGGGCEEEEEEEEETTCCEE
T ss_pred             eeeeeccccceeEEccCCccccCCCeEE---ECCCccEEEeCCCHHHCEEEEEEEEeCCCCEE
Confidence            68999998766310        011221   12346799999999999999999988776653

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=3.3e-08  Score=51.07  Aligned_cols=29  Identities=24%  Similarity=0.500  Sum_probs=25.7

Q ss_pred             EEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272          30 HTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus        30 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      ..|.|.+++.+|+|.|.|.+.+..+....
T Consensus        65 ~tL~I~~v~~~D~G~Y~C~a~n~~g~~~~   93 (102)
T d1f97a1          65 SGITFSSVTRKDNGEYTCMVSEEGGQNYG   93 (102)
T ss_dssp             TEEEESCCCGGGCEEEEEEEEETTSSSEE
T ss_pred             CEEEEeECCccCCEEEEEEEEECCCCEEE
Confidence            46999999999999999999998877655

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.58  E-value=4.9e-08  Score=51.40  Aligned_cols=51  Identities=18%  Similarity=0.132  Sum_probs=40.1

Q ss_pred             ecccCCcEEEEEeCC-------------------eEEEEEeccCCCCCe---eeEEEeecCccceeeEEEEEE
Q psy3272          63 SVSVSDRRLMETRGN-------------------KHTLTIKNVQSTDFG---NYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~-------------------~~~l~i~~~~~~d~G---~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      .|.|.|.+.|...+.                   ...|.|.+++.+|+|   .|.|.|.|..|.....+.+.+
T Consensus        28 ~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~~~~~~~~~  100 (111)
T d1biha2          28 NAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYE  100 (111)
T ss_dssp             EEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEE
T ss_pred             cCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCCceEEEEEEE
Confidence            688899999987531                   237999999998877   799999999998777654443

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=7.6e-08  Score=51.47  Aligned_cols=40  Identities=20%  Similarity=0.376  Sum_probs=33.2

Q ss_pred             EEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEE
Q psy3272          21 RLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM   60 (115)
Q Consensus        21 ~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~   60 (115)
                      +.+........|.|.++..+|+|.|.|.+.|..|.....+
T Consensus        85 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~  124 (130)
T d1gxea_          85 VRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNL  124 (130)
T ss_dssp             CEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEE
T ss_pred             EEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEE
Confidence            4444556678899999999999999999999998887733

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=3.6e-07  Score=46.08  Aligned_cols=42  Identities=26%  Similarity=0.351  Sum_probs=31.9

Q ss_pred             cEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          69 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        69 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .+....++....|.|.++..+|+|.|+|.|.|..    ....|.|.
T Consensus        47 ~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~----~~a~l~V~   88 (90)
T d1x44a1          47 RYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQ----SSAKLSVD   88 (90)
T ss_dssp             SEEEEEETTEEEEEEEEECTTTCSEEEEEETTEE----EEEEEEEE
T ss_pred             cEEEEEeCCccEEEECccccccCEEEEEEEecce----EEEEEEEE
Confidence            4555566677899999999999999999998853    34455553

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.54  E-value=1.7e-07  Score=46.73  Aligned_cols=56  Identities=16%  Similarity=0.181  Sum_probs=39.2

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEEEEeC------CeEEEEEeccCCCCCeeeEEEeecCccceee
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRG------NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK  107 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~~~~~------~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~  107 (115)
                      ..+.=.+.|.+             .|.|.+...|+..+      ....|.|.++..+|+|.|+|.+.|...+...
T Consensus        19 ~G~~vtL~C~~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~s~~S~~v   80 (84)
T d1fnla1          19 EKDSVTLKCQG-------------AYSPEDNSTQWFHNESLISSQASSYFIDAATVNDSGEYRCQTNLSTLSDPV   80 (84)
T ss_dssp             TTCCEEEEEEC-------------CCBTTBCCCEEEETTEEEESSCSEEEESSCCGGGCEEEEEECSSSCCCCCE
T ss_pred             CCCeEEEEEEe-------------ccCCCCeEEEEeeeceeeeecceeeEecCCcccCCEEEEEEccCCCccccE
Confidence            45556778876             44555544443332      2357999999999999999999987765443

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=6.2e-09  Score=54.49  Aligned_cols=53  Identities=11%  Similarity=0.107  Sum_probs=32.3

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG   54 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~   54 (115)
                      ++|+|+|++.++..................|.|.....+|.|.|+|+|.+..+
T Consensus        35 ~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~   87 (106)
T d1zxqa1          35 LTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLM   87 (106)
T ss_dssp             EEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECG
T ss_pred             ceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCC
Confidence            36899999998753101110000011235567776667777899999998654

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=4.3e-08  Score=50.94  Aligned_cols=50  Identities=10%  Similarity=0.070  Sum_probs=36.3

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCccee
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK   57 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~   57 (115)
                      .|+|++++..+..  ...   ......+.|.|.....+|.|.|+|++.|..+...
T Consensus        38 ~v~W~~~~~~l~~--~~~---~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~   87 (103)
T d1iama1          38 TVVLLRGEKELKR--EPA---VGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQG   87 (103)
T ss_dssp             EEEEEETTEEEEE--EEC---CTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGT
T ss_pred             EEEEccccccccc--ccc---ccccceEEEEEeeehhHCCCEEEEEEEeCCCCcc
Confidence            5889999998764  111   0112356789998889999999999998766543

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.48  E-value=1.3e-07  Score=48.64  Aligned_cols=38  Identities=32%  Similarity=0.451  Sum_probs=33.2

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccce--eeEEEEEEeC
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRA--KKYMELSELE  115 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~--~~~~~l~v~~  115 (115)
                      ...|.|.+++.+|+|.|+|.+.+..|..  ++.+.|.|+|
T Consensus        59 ngSL~I~nl~~~DsG~Y~c~v~~~~g~~~~~~~~~L~V~E   98 (98)
T d1hnga1          59 NGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILE   98 (98)
T ss_dssp             TSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEEC
T ss_pred             CccEEEeCCCHHHCEEEEEEEEeCCCCEEEEEEEEEEEEC
Confidence            3469999999999999999999988874  6788898875

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=4.2e-07  Score=47.07  Aligned_cols=36  Identities=14%  Similarity=0.095  Sum_probs=28.8

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      ...|.|..+...|.|.|+|.|.|..|.....+.+.+
T Consensus        59 ~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~~~~~~   94 (103)
T d1iama1          59 EVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENT   94 (103)
T ss_dssp             EEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEE
T ss_pred             eEEEEEeeehhHCCCEEEEEEEeCCCCccCeEeeeE
Confidence            347899999999999999999999988655554443

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.48  E-value=1.9e-08  Score=53.02  Aligned_cols=56  Identities=20%  Similarity=0.318  Sum_probs=38.4

Q ss_pred             CcceEEEECCEEeCCC-----CCCCEEEEEeCCeEEEEEecCCCCCCe---EEEEEeecCCcceeEE
Q psy3272           1 MGMMSWYQDTFLIEPS-----VSDRRLMETRGNKHTLTIKNVQSTDFG---NYSCVADNNLGRAKKY   59 (115)
Q Consensus         1 ~p~v~W~~~~~~~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~G---~y~C~~~~~~~~~~~~   59 (115)
                      .|.+.|+|++..+...     ...++.   ......|.|.+++.+|+|   .|.|.+.|..+.....
T Consensus        32 ~p~v~W~k~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~~~~   95 (111)
T d1biha2          32 KPLITWKKRLSGADPNADVTDFDRRIT---AGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVV   95 (111)
T ss_dssp             CCEEEEEEEETTSCGGGCCCCCCTTEE---ECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEE
T ss_pred             CCEEEEEeCCccccccccceeeeeeec---cccccccEEeeeEeeccCCceEEEEEEEeCCCCceEE
Confidence            3789999987654321     011121   234567999999988776   7999999988777653

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.47  E-value=2e-07  Score=49.70  Aligned_cols=38  Identities=29%  Similarity=0.413  Sum_probs=34.4

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ....|.|.+++.+|+|.|+|.+.+..+..+..+.|.|.
T Consensus        79 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~  116 (126)
T d1pkoa_          79 GKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE  116 (126)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CeEEEEEEEEchhHCeEEEEEEEECCCEEEEEEEEEEe
Confidence            35789999999999999999999998888888888885

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.4e-07  Score=48.02  Aligned_cols=26  Identities=35%  Similarity=0.551  Sum_probs=22.7

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccc
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGR  104 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~  104 (115)
                      ..|.|.+++.+|+|.|+|.+.|..+.
T Consensus        60 ~~L~I~~v~~~D~G~Y~C~a~n~~~~   85 (93)
T d1n26a1          60 RRLLLRSVQLHDSGNYSCYRAGRPAG   85 (93)
T ss_dssp             SEEEECSCCGGGCEEEEEESSSSCSC
T ss_pred             CEEEECCCChhcCEEEEEEECCcccc
Confidence            37999999999999999999886543

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=3.2e-07  Score=45.51  Aligned_cols=35  Identities=23%  Similarity=0.320  Sum_probs=28.2

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ...|.|.+++.+|+|.|.|.|.|...+.  .+.|.|.
T Consensus        47 ~~~l~i~~v~~~d~G~Y~C~a~~s~~S~--~v~l~V~   81 (82)
T d1f2qa1          47 NSSLNIVNAKFEDSGEYKCQHQQVNESE--PVYLEVF   81 (82)
T ss_dssp             SSEEEECSCCGGGCEEEEEECTTSSCCC--CEEEEEE
T ss_pred             cceeEECCCChhhCCcEEEEecCCCCcc--cEEEEEE
Confidence            3479999999999999999999976654  4556664

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.40  E-value=3.9e-07  Score=45.49  Aligned_cols=61  Identities=16%  Similarity=0.206  Sum_probs=41.7

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCC-cEEEEEeC-----CeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEE
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSD-RRLMETRG-----NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS  112 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~-~~~~~~~~-----~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~  112 (115)
                      ..+.=.+.|.+             .|.|.+ .+.|.+++     ....|.|..+..+|+|.|+|.+.|..++..  +.|.
T Consensus        18 ~G~~v~L~C~~-------------~~~~~~~~~~w~~~g~~~~~~~~~l~i~~v~~~dsG~Y~C~a~ns~~S~~--v~l~   82 (85)
T d2fcba1          18 QEDSVTLTCRG-------------THSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDP--VHLT   82 (85)
T ss_dssp             TTCEEEEEEEC-------------SSCCCTTCCEEEETTEECTTCCSSEEEEECCGGGCEEEEEECTTSBCCCC--EEEE
T ss_pred             CCCeEEEEEEE-------------eeccceeEEEeecccccccccccceEEeeccccCCcEEEEECCCCccccc--EEEE
Confidence            45556677876             344444 34455443     234799999999999999999999876644  4565


Q ss_pred             Ee
Q psy3272         113 EL  114 (115)
Q Consensus       113 v~  114 (115)
                      |.
T Consensus        83 V~   84 (85)
T d2fcba1          83 VL   84 (85)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=5.9e-07  Score=45.41  Aligned_cols=37  Identities=27%  Similarity=0.197  Sum_probs=29.7

Q ss_pred             eCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          75 RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        75 ~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      ......|.|.+++.+|+|.|.|.+.|..+..+  +.|.|
T Consensus        56 ~~~~~sL~I~~l~~~DsG~Y~c~~~n~~~t~~--~~l~V   92 (93)
T d1ccza1          56 DTVSGSLTIYNLTSSDEDEYEMESPNITDTMK--FFLYV   92 (93)
T ss_dssp             CTTTCCEEECSCCGGGCEEEEEECTTCCSCEE--EEEEE
T ss_pred             cCCeeEEEEEecChhhCEEEEEEEECCCcEEE--EEEEE
Confidence            34456799999999999999999999877654  55555

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.31  E-value=2.9e-07  Score=46.41  Aligned_cols=44  Identities=27%  Similarity=0.190  Sum_probs=33.6

Q ss_pred             CCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        67 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      .+++.+...+....|.|.++...|+|.|+|.|.|..+    ++.|.|.
T Consensus        44 ~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~----sa~l~V~   87 (89)
T d1tiua_          44 SPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKS----AANLKVK   87 (89)
T ss_dssp             SSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBC----CEEEEEE
T ss_pred             ceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEE----EEEEEEE
Confidence            4455566666778999999999999999999988654    3445554

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=8.3e-07  Score=46.93  Aligned_cols=37  Identities=30%  Similarity=0.557  Sum_probs=33.3

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEe
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL  114 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~  114 (115)
                      ...|.|.+++.+|+|.|.|.+.+..+.....+.|.|+
T Consensus        87 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          87 DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            4579999999999999999999999988888888874

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=4.5e-06  Score=43.22  Aligned_cols=33  Identities=18%  Similarity=0.172  Sum_probs=23.9

Q ss_pred             EEEEeccCCCCCeeeEEEeecCccceeeEEEEE
Q psy3272          80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS  112 (115)
Q Consensus        80 ~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~  112 (115)
                      .|.|......|.|.|+|.|.|..+.....+.+.
T Consensus        64 ~l~~~~~~~d~g~~ytC~A~n~~~~~~~~~~~~   96 (106)
T d1zxqa1          64 TFNSTADREDGHRNFSCLAVLDLMSRGGNIFHK   96 (106)
T ss_dssp             EEEEECCGGGGGCEEEEEEEEECGGGTCCEEEE
T ss_pred             EEEEeeehhcCCcEEEEEEEecCCCCCCeeEec
Confidence            566776677777899999999987654444443

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=6.4e-06  Score=43.14  Aligned_cols=40  Identities=23%  Similarity=0.292  Sum_probs=31.9

Q ss_pred             CCeEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEEeC
Q psy3272          76 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE  115 (115)
Q Consensus        76 ~~~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v~~  115 (115)
                      .....|.|.++..+|+|.|.|.+..........+.|.|.+
T Consensus        71 ~~~~sL~I~~l~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~  110 (116)
T d1xeda_          71 NGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVLE  110 (116)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred             CCEEEEEEhhhCcCCCEEEEEEEEcCCCCceEeEEEEEEC
Confidence            3567899999999999999999986655555567787764

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=5.3e-06  Score=43.06  Aligned_cols=27  Identities=15%  Similarity=0.219  Sum_probs=23.2

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCCc
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNLG   54 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~~   54 (115)
                      ...+|+|.+++.+|+|.|.|.+.+...
T Consensus        69 ~ngSL~I~~v~~~D~G~Y~c~v~~~~~   95 (107)
T d1l6za1          69 SNGSLLFQMITMKDMGVYTLDMTDENY   95 (107)
T ss_dssp             TTSCEEECSCCGGGCEEEEEEEEETTE
T ss_pred             ccccEEEcCCCchhCEEEEEEEEECCC
Confidence            456899999999999999999976543

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.92  E-value=8.3e-06  Score=42.73  Aligned_cols=39  Identities=21%  Similarity=0.382  Sum_probs=29.6

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCcc--ceeeEEEEEEeC
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNLG--RAKKYMELSELE  115 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~--~~~~~~~l~v~~  115 (115)
                      ....|.|.++...|+|.|.|.+.+..+  .....+.|.|.|
T Consensus        79 ~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~e  119 (119)
T d1neua_          79 KDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFE  119 (119)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEEC
T ss_pred             CEEEEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEEC
Confidence            345799999999999999999998654  345567888865

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.90  E-value=0.00011  Score=37.81  Aligned_cols=60  Identities=18%  Similarity=0.309  Sum_probs=40.7

Q ss_pred             eEEEEEeecCCcceeEEEEE-----ecccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          43 GNYSCVADNNLGRAKKYMEL-----SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        43 G~y~C~~~~~~~~~~~~~~v-----~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      ..|..++.+..+.....+-.     ....+.++....++....|.|.++..+|+|.|.|.+.+..
T Consensus        29 ~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~YyCa~~~~~   93 (106)
T d1a0ql1          29 KKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATYYCLQYYNL   93 (106)
T ss_dssp             TTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSS
T ss_pred             CCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeEEEEEeCCC
Confidence            34677777665555542222     1122335666677788899999999999999999987543

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.85  E-value=1.5e-05  Score=42.12  Aligned_cols=34  Identities=26%  Similarity=0.465  Sum_probs=28.0

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCCcceeE--EEEE
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNLGRAKK--YMEL   62 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~v   62 (115)
                      ...|.|.+++.+|+|.|.|.+.+..+....  .|.|
T Consensus        80 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V  115 (126)
T d1pkoa_          80 KVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV  115 (126)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eEEEEEEEEchhHCeEEEEEEEECCCEEEEEEEEEE
Confidence            578999999999999999999887666555  4444

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=1.4e-05  Score=40.56  Aligned_cols=32  Identities=28%  Similarity=0.474  Sum_probs=25.1

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCccceeeEEEEEE
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE  113 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~~~~l~v  113 (115)
                      ...|.|.+++.+|+|.|.|.+.+.    +..+.|.|
T Consensus        66 ~~sL~I~~l~~~DsG~Y~C~v~~~----~~~v~L~V   97 (97)
T d2nxyb1          66 NFPLIIKNLKIEDSDTYICEVEDQ----KEEVQLLV   97 (97)
T ss_dssp             BCCEEECSCCGGGCEEEEEEETTE----EEEEEEEE
T ss_pred             EEEEEECCCChHHCEEEEEEEecC----CeEEEEEC
Confidence            457999999999999999999764    23455544

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=0.00015  Score=35.68  Aligned_cols=57  Identities=18%  Similarity=0.219  Sum_probs=35.8

Q ss_pred             CcceEEEE-CCE---EeCCCCCCCEEEEE---eCCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272           1 MGMMSWYQ-DTF---LIEPSVSDRRLMET---RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus         1 ~p~v~W~~-~~~---~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      .|.|+|-| +|+   +++.. .++++.=.   .-.-..|.+..+.++|.|.|+|.+.-..+...+
T Consensus        33 RPnVtWCKlngt~cv~Le~~-pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s~vieS   96 (104)
T d1xaua_          33 RPNVTWCKHNGTIWVPLEVG-PQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQVINS   96 (104)
T ss_dssp             CCCEEEEEECSSSEEECCCB-TTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CCCcEEEEeCCcEEEEeecC-CccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCChhheec
Confidence            38899998 443   44431 12222111   123457889999999999999999865544443

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=4.8e-05  Score=38.97  Aligned_cols=26  Identities=27%  Similarity=0.479  Sum_probs=22.4

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      +..+|.|.+++.+|+|.|.|.+....
T Consensus        63 g~~sL~I~~v~~~D~G~Y~C~V~~~~   88 (105)
T d1dr9a1          63 NNLSIVILALRPSDEGTYECVVLKYE   88 (105)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEEECC
T ss_pred             CcEEEEECcCChHHCeEEEEEEEeCC
Confidence            45689999999999999999997543

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.70  E-value=0.00017  Score=37.17  Aligned_cols=59  Identities=20%  Similarity=0.308  Sum_probs=40.8

Q ss_pred             eEEEEEeecCCcceeEEEEE-----ecccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          43 GNYSCVADNNLGRAKKYMEL-----SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        43 G~y~C~~~~~~~~~~~~~~v-----~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ..|..++.+..+.....+-.     ......+......+....|.|.++..+|+|.|.|.+.+.
T Consensus        30 ~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~~   93 (107)
T d1c5cl1          30 SGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYAS   93 (107)
T ss_dssp             TTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSS
T ss_pred             CCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEEEecCcC
Confidence            44677777766666542222     112333555566777889999999999999999987764

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.69  E-value=0.0003  Score=36.21  Aligned_cols=59  Identities=32%  Similarity=0.397  Sum_probs=40.9

Q ss_pred             eEEEEEeecCCcceeEEEEE-----ecccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          43 GNYSCVADNNLGRAKKYMEL-----SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        43 G~y~C~~~~~~~~~~~~~~v-----~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      +.|.-++.+..+.....+..     ......++....++....|.|.++..+|++.|.|.+...
T Consensus        30 ~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa~~~~   93 (107)
T d1mexl1          30 GTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYFCQQYNS   93 (107)
T ss_dssp             TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSS
T ss_pred             CCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeEEEeECCC
Confidence            45666777666666553332     112234566666778889999999999999999987643

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=3.6e-05  Score=39.47  Aligned_cols=28  Identities=25%  Similarity=0.429  Sum_probs=23.6

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCccc
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNLGR  104 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~  104 (115)
                      ...+|.|.+++.+|+|.|.|.+.+..+.
T Consensus        63 g~~sL~I~~v~~~D~G~Y~C~V~~~~~~   90 (105)
T d1dr9a1          63 NNLSIVILALRPSDEGTYECVVLKYEKD   90 (105)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEEECCTT
T ss_pred             CcEEEEECcCChHHCeEEEEEEEeCCCC
Confidence            3568999999999999999999865444

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=2.8e-05  Score=40.75  Aligned_cols=30  Identities=30%  Similarity=0.620  Sum_probs=25.0

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      ...|+|.+++.+|+|.|.|.+.+..+....
T Consensus        87 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~  116 (124)
T d1eaja_          87 DASINVTNLQLSDIGTYQCKVKKAPGVANK  116 (124)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             EEEEEEcccEEccCEEEEEEEEECCCeEEe
Confidence            467999999999999999999876654444

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.63  E-value=1.4e-05  Score=41.35  Aligned_cols=35  Identities=14%  Similarity=0.214  Sum_probs=28.9

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccc-eeeEEEEEE
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGR-AKKYMELSE  113 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~-~~~~~~l~v  113 (115)
                      ..|.|.+++.+|+|.|+|.+.+..+. .+..+.|.|
T Consensus        71 gSL~I~~v~~~D~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          71 GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             SCEEECSCCGGGCEEEEEEEEETTEEECCCCEEECC
T ss_pred             ccEEEcCCCchhCEEEEEEEEECCCCEEEEEEEEEE
Confidence            47999999999999999999877654 555677765

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.57  E-value=0.00029  Score=36.22  Aligned_cols=37  Identities=32%  Similarity=0.526  Sum_probs=30.0

Q ss_pred             cCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          66 VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        66 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      ...++.....+....|.|.++..+|+|.|.|.+.+..
T Consensus        58 ~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~~   94 (106)
T d1i8ka_          58 VPSRFSSSGTGTDFVFTIENTLSEDVGDYYCLQSFNV   94 (106)
T ss_dssp             SCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             CCcceeEeCCCCeeeecccCCccccCEEEeEecCccc
Confidence            3456666667778899999999999999999877543

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00025  Score=34.24  Aligned_cols=47  Identities=17%  Similarity=0.432  Sum_probs=29.3

Q ss_pred             EEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCCcceeEEEE
Q psy3272           5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME   61 (115)
Q Consensus         5 ~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~   61 (115)
                      .|.|+|+.|..  ...     ....-.+.|..  .+++|.|.|++.. ...+.+.++
T Consensus        32 rW~K~gkvl~e--d~~-----~~~~tey~V~~--~D~SGeY~CVFl~-~P~~~a~Ie   78 (80)
T d3b5ha2          32 RWLKGGVVLKE--DAL-----PGQKTEFKVDS--DDQWGEYSCVFLP-EPMGTANIQ   78 (80)
T ss_dssp             EEESSSEEEEC--TTC-----CCSEEEEEECG--GGCCEEEEEEEES-TTSCEEEEE
T ss_pred             EEeeCCEEccc--cCC-----CCCceEEEEec--CCCCceEEEEEcC-CCcceeEEE
Confidence            69999999876  221     12334455554  6789999999863 333443443

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.54  E-value=0.00018  Score=37.09  Aligned_cols=59  Identities=20%  Similarity=0.200  Sum_probs=40.7

Q ss_pred             eEEEEEeecCCcceeEEEEE-----ecccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          43 GNYSCVADNNLGRAKKYMEL-----SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        43 G~y~C~~~~~~~~~~~~~~v-----~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ..|..++.+..+.....+..     ......++.....+....|.|.++..+|+|.|.|.+...
T Consensus        30 ~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   93 (107)
T d1ospl1          30 YSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATYFCQQYWS   93 (107)
T ss_dssp             TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEEEEEECSS
T ss_pred             ccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcEEEeeccC
Confidence            34677777766666543222     112344566666667789999999999999999987754

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00014  Score=37.35  Aligned_cols=38  Identities=18%  Similarity=0.234  Sum_probs=28.1

Q ss_pred             CCeEEEEEeccCCCCCeeeEEEeecCccc---eeeEEEEEE
Q psy3272          76 GNKHTLTIKNVQSTDFGNYSCVADNNLGR---AKKYMELSE  113 (115)
Q Consensus        76 ~~~~~l~i~~~~~~d~G~y~C~~~n~~~~---~~~~~~l~v  113 (115)
                      .....|.|.+++.+|+|.|.|.+......   ....+.|.|
T Consensus        67 ~~~~~L~I~~l~~~DsG~Y~C~v~~~~~~~~~~~~~~~l~V  107 (108)
T d1hkfa_          67 AGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLVV  107 (108)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEEECTTTCCEEEEEEEEEEE
T ss_pred             CCEEEEEEhhhCCCCCEEEEEEEecCCCCcEEEeeEEEEEE
Confidence            45678999999999999999998755432   333455554

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=8.6e-05  Score=38.23  Aligned_cols=39  Identities=33%  Similarity=0.502  Sum_probs=28.9

Q ss_pred             CCeEEEEEeccCCCCCeeeEEEeecCc--cc---eeeEEEEEEe
Q psy3272          76 GNKHTLTIKNVQSTDFGNYSCVADNNL--GR---AKKYMELSEL  114 (115)
Q Consensus        76 ~~~~~l~i~~~~~~d~G~y~C~~~n~~--~~---~~~~~~l~v~  114 (115)
                      .....|.|.+++.+|.|.|.|.+....  +.   ....+.|.|.
T Consensus        66 ~~~~sL~I~~v~~~D~G~Y~C~V~~~~~~~~~~~~~~~~~L~V~  109 (110)
T d1ncna_          66 SDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVL  109 (110)
T ss_dssp             TTTTEEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             CCeEEEEECCCChhHCEEEEEEEEecCCCceEEEEcceEEEEEE
Confidence            345689999999999999999986433  32   2446667765

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.52  E-value=0.00049  Score=35.34  Aligned_cols=60  Identities=22%  Similarity=0.332  Sum_probs=40.9

Q ss_pred             CeEEEEEeecCCcceeEEEEE-----ecccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          42 FGNYSCVADNNLGRAKKYMEL-----SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        42 ~G~y~C~~~~~~~~~~~~~~v-----~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ...|.-++.+..+.....+..     ......++....++....|.|.++..+|+|.|.|.....
T Consensus        29 ~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   93 (107)
T d1d5il1          29 INSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYYCLQYDE   93 (107)
T ss_dssp             CTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEEeeeccC
Confidence            344566666665555543332     112234666667777889999999999999999987764

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.51  E-value=0.00015  Score=37.78  Aligned_cols=59  Identities=10%  Similarity=0.034  Sum_probs=36.0

Q ss_pred             eEEEEEeecCCcceeEEE-EE-------ecccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          43 GNYSCVADNNLGRAKKYM-EL-------SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        43 G~y~C~~~~~~~~~~~~~-~v-------~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ..|...+.+..+.....+ ..       .............+....|.|.++..+|+|.|.|.+...
T Consensus        29 ~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~   95 (115)
T d1i9ea_          29 TPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVSGF   95 (115)
T ss_dssp             CCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccceecccccCC
Confidence            456677776666555422 22       111122222222345568999999999999999987643

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.49  E-value=0.00054  Score=35.14  Aligned_cols=36  Identities=33%  Similarity=0.538  Sum_probs=30.0

Q ss_pred             CCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        67 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      ..++.....+....|.|.++..+|+|.|.|.+.+..
T Consensus        59 ~~~fs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~~   94 (107)
T d1j1pl_          59 PSRFSGSGSGTDFTLSINSVETEDFGMYFCQQANSW   94 (107)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             CCcceecccCCEEEEEEcccCcCCCEEEEEEcCCCC
Confidence            346777777888899999999999999999876543

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.00012  Score=36.94  Aligned_cols=39  Identities=26%  Similarity=0.332  Sum_probs=30.6

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCccc--eeeEEEEEEeC
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNLGR--AKKYMELSELE  115 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~--~~~~~~l~v~~  115 (115)
                      ....+.|.++...|+|.|+|...+....  .+-.+.|.|.|
T Consensus        55 ~~a~F~i~~v~~~~~G~Y~C~y~~~~~~S~~Sd~leL~VTd   95 (95)
T d1olla1          55 NKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTE   95 (95)
T ss_dssp             CEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEES
T ss_pred             cEEEEEEeeeecCCCceEEEEeCCCCCccCCCCCEEEEEeC
Confidence            3467999999999999999999887653  33467777764

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.42  E-value=0.00058  Score=35.41  Aligned_cols=48  Identities=23%  Similarity=0.431  Sum_probs=32.4

Q ss_pred             cceEEEEC--CE----EeCCCCCCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeec
Q psy3272           2 GMMSWYQD--TF----LIEPSVSDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus         2 p~v~W~~~--~~----~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      +.|.||+.  |.    .+..  ..++.....  .....|+|.+++++|+|.|.|.+..
T Consensus        31 ~~i~WYrq~~g~~~~~~~~~--~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   86 (112)
T d1sq2n_          31 GSTCWYRKKSGEGNEESISK--GGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGV   86 (112)
T ss_dssp             CCEEEEEEETTSCCCEECCC--BTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECB
T ss_pred             CceEEEEeeccceeeeeecc--CCcEeeEEecCCceeeeEecCCcCccCEEEeEEEec
Confidence            46889972  22    1222  445544433  3456899999999999999998754

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.41  E-value=0.00036  Score=35.66  Aligned_cols=35  Identities=23%  Similarity=0.284  Sum_probs=28.6

Q ss_pred             CCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        67 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ...+.....+....|.|.++..+|+|.|.|.....
T Consensus        57 ~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   91 (104)
T d1yqvl1          57 PVRFSGSGSGTSYSLTISSMETEDAATYYCQQWGR   91 (104)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CceEEEecCCCEEEEEecccCcccCCeEEEEecCC
Confidence            34556666778889999999999999999987644

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.38  E-value=0.0014  Score=33.47  Aligned_cols=57  Identities=25%  Similarity=0.302  Sum_probs=38.1

Q ss_pred             EEEEEeecCCcceeEEEEE------ecccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          44 NYSCVADNNLGRAKKYMEL------SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~~~v------~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .|.-++.+..+.....+..      .+ ...++....+.....|.|.++..+|+|.|.|.+...
T Consensus        31 ~~~~WYrq~~g~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~L~I~~l~~~DSa~YyCa~~~~   93 (107)
T d1kcvl1          31 TYVSWYQQKPGQSPVLLIYGASNRYTG-VPDRFTGSGSATDFTLTISSVQADDDADYYCGQSYS   93 (107)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTT-CCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CceEEEEcccCCCCEEEEEecccccCC-ccceEEeeccCCeeecEEHhheecCCceEEEEecCC
Confidence            4555555555555443322      11 234555566777889999999999999999997654

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=6.9e-05  Score=38.05  Aligned_cols=26  Identities=15%  Similarity=0.359  Sum_probs=21.8

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      ....+.|.+++..|+|.|.|.+.+..
T Consensus        60 ~~a~F~l~~vt~~~~G~Y~C~y~~~~   85 (99)
T d1ucta1          60 TDPEFVIDHMDANKAGRYQCQYRIGH   85 (99)
T ss_dssp             CCCEEEECSCCGGGCEEEEEEEEETT
T ss_pred             ceEEEEecCCCHHHCceEEEEEECCC
Confidence            34668999999999999999987643

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.00015  Score=37.67  Aligned_cols=26  Identities=23%  Similarity=0.442  Sum_probs=22.0

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      .....|+|.+++.+|+|.|.|.+...
T Consensus        71 ~~~~sL~I~~l~~~DsG~Y~C~v~~~   96 (116)
T d1xeda_          71 NGTFVVNIAQLSQDDSGRYKCGLGIN   96 (116)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEESCG
T ss_pred             CCEEEEEEhhhCcCCCEEEEEEEEcC
Confidence            34578999999999999999998643

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.002  Score=33.28  Aligned_cols=36  Identities=25%  Similarity=0.353  Sum_probs=29.4

Q ss_pred             cCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          66 VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        66 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ...++.....+....|.|.++..+|+|.|.|.+...
T Consensus        64 ~~~rfs~~~~~~~~~L~I~~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          64 DTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             CTTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCcEEEEECCCCChhcEEccCCCCCCEEEeEeEcCC
Confidence            344666666777889999999999999999998754

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.29  E-value=0.0018  Score=33.08  Aligned_cols=58  Identities=26%  Similarity=0.361  Sum_probs=37.3

Q ss_pred             EEEEEeecCCcceeEEEEE-----ecccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          44 NYSCVADNNLGRAKKYMEL-----SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~~~v-----~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .|.-++.+..+.....+-.     ......++....++....|.|.++..+|+|.|.|.+...
T Consensus        30 ~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   92 (106)
T d1op3k1          30 TWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYHCQHYAG   92 (106)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEEEEEEECS
T ss_pred             CcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcEeeeeCCC
Confidence            3455555555555442211     111223555566777789999999999999999987653

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.28  E-value=0.0014  Score=33.94  Aligned_cols=34  Identities=21%  Similarity=0.270  Sum_probs=25.3

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ..++.....  .....|+|.+++.+|+|.|.|.+..
T Consensus        62 ~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~   97 (116)
T d1tvda_          62 QGRFSVKHILTQKAFHLVISPVRTEDSATYYCAFTL   97 (116)
T ss_dssp             TTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             ceEEEEEecCceeEEeeeecCccccccccceeeEec
Confidence            345554432  2346899999999999999998764

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.28  E-value=0.0013  Score=33.58  Aligned_cols=56  Identities=23%  Similarity=0.230  Sum_probs=37.2

Q ss_pred             EEEEeecCCcceeEEEEE-----ecccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeec
Q psy3272          45 YSCVADNNLGRAKKYMEL-----SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        45 y~C~~~~~~~~~~~~~~v-----~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      |.-++.+..+.....+-.     ......++....++....|.|.++..+|+|.|.|.+..
T Consensus        31 ~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1lk3l1          31 RMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQQSW   91 (106)
T ss_dssp             CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             cEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCccccccc
Confidence            445555555555442222     11224456666677788999999999999999998664

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.27  E-value=0.00042  Score=35.98  Aligned_cols=58  Identities=12%  Similarity=0.109  Sum_probs=35.5

Q ss_pred             EEEEEeecCCcceeEEE-EEec-----ccCCcEEEEE--eCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          44 NYSCVADNNLGRAKKYM-ELSV-----SVSDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~~-~v~g-----~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .|..++.+..+.....| ....     ....+.....  ......|.|.++..+|+|.|.|.+...
T Consensus        30 ~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          30 PYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAAEYFCAVSES   95 (115)
T ss_dssp             CEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCEEEEEEEESS
T ss_pred             eeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCccceeeecCC
Confidence            46777777666555422 2211     1111222222  233457999999999999999999764

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00018  Score=36.91  Aligned_cols=26  Identities=31%  Similarity=0.608  Sum_probs=22.5

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      .....|+|.+++.+|+|.|.|.+...
T Consensus        66 ~~~~sL~I~~v~~~D~G~Y~C~V~~~   91 (110)
T d1ncna_          66 SDSWTLRLHNLQIKDKGLYQCIIHHK   91 (110)
T ss_dssp             TTTTEEEECSCCGGGCEEEEEEEEEE
T ss_pred             CCeEEEEECCCChhHCEEEEEEEEec
Confidence            45678999999999999999999643

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00028  Score=35.67  Aligned_cols=37  Identities=19%  Similarity=0.294  Sum_probs=28.6

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCccce--eeEEEEEE
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNLGRA--KKYMELSE  113 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~~--~~~~~l~v  113 (115)
                      ....+.|.++..+|+|.|.|...+.....  +-.+.|.|
T Consensus        60 ~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~Sdpl~L~V   98 (99)
T d1ucta1          60 TDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVV   98 (99)
T ss_dssp             CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEE
T ss_pred             ceEEEEecCCCHHHCceEEEEEECCCcccCCCCCEEEEe
Confidence            34578999999999999999999877542  33566665

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.25  E-value=0.0028  Score=32.60  Aligned_cols=58  Identities=21%  Similarity=0.276  Sum_probs=41.1

Q ss_pred             EEEEEeecCCcceeEEEEE-----ecccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          44 NYSCVADNNLGRAKKYMEL-----SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~~~v-----~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .|..++.+..+.....+-.     ....+.++.....+....|.|.++..+|++.|.|.+...
T Consensus        35 ~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa~~~~   97 (111)
T d2gsia1          35 SYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDAATYYCSHIRE   97 (111)
T ss_dssp             CCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             cceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCCceEEEEECCC
Confidence            4567777776666653322     112234666667777889999999999999999987755

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.24  E-value=0.0013  Score=33.43  Aligned_cols=58  Identities=31%  Similarity=0.390  Sum_probs=37.8

Q ss_pred             EEEEEeecCCcceeEEEEE-----ecccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          44 NYSCVADNNLGRAKKYMEL-----SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~~~v-----~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .|..++.+..+.....+..     ......+.....+.....|.|.++..+|+|.|.|.+...
T Consensus        28 ~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~   90 (103)
T d8faba1          28 QYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQAWDN   90 (103)
T ss_dssp             SCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             CCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEeeecCC
Confidence            4555666655554432222     112233455556667789999999999999999987654

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.23  E-value=0.00036  Score=35.88  Aligned_cols=33  Identities=27%  Similarity=0.397  Sum_probs=26.9

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .+++..........|.|.++.++|+|.|.|.+.
T Consensus        59 ~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d1ospl1          59 PSRFSGSDSGKDYTLSITSLQTEDVATYFCQQY   91 (107)
T ss_dssp             CTTEEEECSSSSEEEEESSCCGGGCSEEEEEEC
T ss_pred             ccccceecCCCeEEeEEcccccccCCcEEEeec
Confidence            456666555667899999999999999999764

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.23  E-value=0.0027  Score=32.44  Aligned_cols=34  Identities=32%  Similarity=0.473  Sum_probs=27.5

Q ss_pred             CcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          68 DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        68 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .++....++....|.|.++..+|+|.|.|.+.+.
T Consensus        61 ~~~s~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   94 (108)
T d2fx7l1          61 DRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQ   94 (108)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCSEEEEEECSS
T ss_pred             cceeeecCCCEEEEEehHheecccEEEeeecCCC
Confidence            3555556667789999999999999999998644

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.23  E-value=0.00015  Score=37.71  Aligned_cols=24  Identities=25%  Similarity=0.577  Sum_probs=20.9

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecC
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      ...|.|.+++.+|+|.|.|.+.+.
T Consensus        80 ~~sL~I~~v~~~DsG~Y~C~v~~~  103 (119)
T d1neua_          80 DGSIVIHNLDYSDNGTFTCDVKNP  103 (119)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEC-
T ss_pred             EEEEEECCCChHHCEEEEEEEEEC
Confidence            467999999999999999999764

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00044  Score=35.42  Aligned_cols=34  Identities=21%  Similarity=0.302  Sum_probs=25.7

Q ss_pred             CCEEEEE--eCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272          19 DRRLMET--RGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        19 ~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      .++.+..  ......|.|.+++++|+|.|.|.+...
T Consensus        57 ~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y~C~v~~~   92 (108)
T d1hkfa_          57 SRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRP   92 (108)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECT
T ss_pred             eeEeeeeeCCCCEEEEEEhhhCCCCCEEEEEEEecC
Confidence            4444433  245678999999999999999998743

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=7.7e-05  Score=37.65  Aligned_cols=23  Identities=30%  Similarity=0.576  Sum_probs=20.6

Q ss_pred             eEEEEEecCCCCCCeEEEEEeec
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ..+|+|.+++++|+|.|.|.+.+
T Consensus        66 ~~sL~I~~l~~~DsG~Y~C~v~~   88 (97)
T d2nxyb1          66 NFPLIIKNLKIEDSDTYICEVED   88 (97)
T ss_dssp             BCCEEECSCCGGGCEEEEEEETT
T ss_pred             EEEEEECCCChHHCEEEEEEEec
Confidence            45799999999999999999965

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.20  E-value=0.00064  Score=35.23  Aligned_cols=33  Identities=36%  Similarity=0.509  Sum_probs=27.3

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..++..........|.|.+++++|+|.|.|-..
T Consensus        65 ~~~~s~~~s~~~~~L~I~~l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          65 PDRFTGSGSGTDFTLTITSVQAEDLAVYYCKQS   97 (113)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CccEEEeCCCCeEeEEecccccCCCeEEEeccc
Confidence            455666666778899999999999999999864

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.19  E-value=0.00077  Score=33.68  Aligned_cols=24  Identities=25%  Similarity=0.475  Sum_probs=20.9

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeec
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ....|.|.+++++|+|.|.|.+..
T Consensus        55 ~~~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1          55 QYVSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEES
T ss_pred             CEEeEEeeccccCcCccceeeEec
Confidence            457899999999999999998753

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00029  Score=35.42  Aligned_cols=47  Identities=21%  Similarity=0.215  Sum_probs=30.7

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      .+.|+|+|..........   ........+.|.+++..|+|.|.|.+.+.
T Consensus        33 ~f~L~k~g~~~~~~~~~~---~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~   79 (95)
T d1olla1          33 EYQLHFEGSLFAVDRPKP---PERINKVKFYIPDMNSRMAGQYSCIYRVG   79 (95)
T ss_dssp             EEEEEETTEEEEEECCSS---CTTCCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEEEECCCCcceeEEcc---CCCccEEEEEEeeeecCCCceEEEEeCCC
Confidence            467888886433100110   00124578999999999999999998653

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.17  E-value=0.00044  Score=35.85  Aligned_cols=27  Identities=26%  Similarity=0.439  Sum_probs=23.4

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCcc
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNLG  103 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~  103 (115)
                      ....|.|.++..+|+|.|.|.+.....
T Consensus        70 ~~~sL~i~~~~~~Dsg~Y~Ca~~~~~~   96 (114)
T d2cdea1          70 KQSSLHITASQLSDSASYICVVSDRGS   96 (114)
T ss_dssp             SEEEEEECSCCGGGCSEEEEEEECSCT
T ss_pred             cccccEEcccChhhCcccceeeecCCC
Confidence            467899999999999999999987543

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.17  E-value=0.0036  Score=32.26  Aligned_cols=59  Identities=31%  Similarity=0.407  Sum_probs=41.0

Q ss_pred             eEEEEEeecCCcceeEEEEE-----ecccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          43 GNYSCVADNNLGRAKKYMEL-----SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        43 G~y~C~~~~~~~~~~~~~~v-----~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ..|..++.+..+.....+..     .......+....++....|.|.++..+|+|.|.|.+...
T Consensus        36 ~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~Dsa~YyCA~~~~   99 (113)
T d1q9ra1          36 KNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAEDLAVYYCKQSYN   99 (113)
T ss_dssp             EECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccCCCeEEEecccCC
Confidence            45677777766666543322     112234556666777889999999999999999998754

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00031  Score=36.37  Aligned_cols=35  Identities=26%  Similarity=0.338  Sum_probs=26.1

Q ss_pred             cEEEEEe--CCeEEEEEeccCCCCCeeeEEEeecCcc
Q psy3272          69 RRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLG  103 (115)
Q Consensus        69 ~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n~~~  103 (115)
                      ++....+  .....|+|.++..+|+|.|.|.+.....
T Consensus        64 R~~~~~~~~~~~~~Lti~~l~~~Dsg~Y~Cav~~~~~  100 (113)
T d1smoa_          64 RIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPK  100 (113)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCTTS
T ss_pred             eEEEEEECCCCEEEEEEccCCcccCceEEEEEECCCC
Confidence            4444443  3456899999999999999999865543

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.13  E-value=0.00068  Score=33.80  Aligned_cols=38  Identities=16%  Similarity=0.415  Sum_probs=28.1

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCC-CCCCeEEEEEeec
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQ-STDFGNYSCVADN   51 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~   51 (115)
                      .|+|.+++..++.  .         .+..|.+.+-. .+++|.|.|....
T Consensus        28 ~I~Wkkn~~~i~g--~---------~~~~L~L~~FSE~e~SGyY~C~~~~   66 (100)
T d1jbja2          28 NLKWEKNGQELPQ--K---------HDKHLVLQDFSEVEDSGYYVCYTPA   66 (100)
T ss_dssp             TCEEEETTEEECS--C---------CCSEEEEESCCTTTSCEEEEEECSS
T ss_pred             ceEEeeccccCCC--C---------CCcEEEEccccccccCcceEEecCC
Confidence            6899999999987  2         23456666654 4799999996543

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.13  E-value=0.003  Score=32.35  Aligned_cols=33  Identities=33%  Similarity=0.516  Sum_probs=27.0

Q ss_pred             cEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          69 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        69 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .+....++....|.|.++..+|+|.|.|.+.+.
T Consensus        61 ~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~~~   93 (108)
T d1jhll_          61 RFSGSGSGTDFTLTISSLEPEDFAMYICQQHNE   93 (108)
T ss_dssp             TEEEEESSSEEEEEECSCCTTCCSEEEEEECSS
T ss_pred             cccccCCCCEEEeEeeeeEeccceEEEEeeCCC
Confidence            444555667789999999999999999987764

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.13  E-value=0.0037  Score=31.88  Aligned_cols=34  Identities=29%  Similarity=0.425  Sum_probs=27.9

Q ss_pred             CcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          68 DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        68 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .++....++....|.|.++..+|++.|.|.+.+.
T Consensus        60 ~~~~~~~~~~~~~L~I~~l~~~DsA~YyCa~~~~   93 (107)
T d1tjgl1          60 SRFSGSGSGTEFTLTISTLRPEDFATYYCQQLHF   93 (107)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCSEEEEEECSB
T ss_pred             cceEEeccCCEEEEEeccceeCcCceEEEEECcC
Confidence            3555666777889999999999999999987654

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.12  E-value=0.0017  Score=33.43  Aligned_cols=29  Identities=21%  Similarity=0.265  Sum_probs=24.1

Q ss_pred             eCCeEEEEEeccCCCCCeeeEEEeecCcc
Q psy3272          75 RGNKHTLTIKNVQSTDFGNYSCVADNNLG  103 (115)
Q Consensus        75 ~~~~~~l~i~~~~~~d~G~y~C~~~n~~~  103 (115)
                      .+....|.|.++..+|+|.|.|.+....+
T Consensus        70 ~~~~~~L~I~~~~~~Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          70 STSSFNFTITASQVVDSAVYFCALSGFYN   98 (114)
T ss_dssp             TTTEEEEEESSCCGGGCEEEEEEEECSBT
T ss_pred             CCCEEEEeecccccccCCCceEeCCCCCC
Confidence            34567899999999999999998776544

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.12  E-value=0.0014  Score=33.56  Aligned_cols=33  Identities=30%  Similarity=0.530  Sum_probs=27.6

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .+++..........|.|.++.++|+|.|.|...
T Consensus        59 ~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (106)
T d1i8ka_          59 PSRFSSSGTGTDFVFTIENTLSEDVGDYYCLQS   91 (106)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CcceeEeCCCCeeeecccCCccccCEEEeEecC
Confidence            566666666678899999999999999999864

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.00032  Score=36.03  Aligned_cols=25  Identities=20%  Similarity=0.351  Sum_probs=21.8

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecC
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      ....|+|.+++.+|+|.|.|.+...
T Consensus        77 ~~~sL~I~~v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          77 KVCNLLLKDLKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEECC
T ss_pred             CEEEEEECCCChhHCEEEEEEEEeC
Confidence            4567999999999999999999643

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.10  E-value=0.0024  Score=32.80  Aligned_cols=33  Identities=27%  Similarity=0.495  Sum_probs=27.4

Q ss_pred             CcEEEEEeCCeEEEEEeccCCCCCeeeEEEeec
Q psy3272          68 DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        68 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      .++....++....|.|.++..+|+|.|.|.+..
T Consensus        60 ~~fs~~~~~~~~~L~I~~~~~~DSa~YyCA~~~   92 (109)
T d1mqkl_          60 SRFSGSGSGTQFSLKINSLLPEDFGSYYCQHHY   92 (109)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCEEEeccCCEEEEEEccccccCCeeEEEeeeC
Confidence            355556677788999999999999999999764

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.10  E-value=0.001  Score=34.17  Aligned_cols=33  Identities=27%  Similarity=0.380  Sum_probs=27.1

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..++..........|+|.+++++|+|.|.|...
T Consensus        61 ~~~fs~~~~~~~~~L~I~~l~~~Dsa~YyCA~~   93 (109)
T d1bwwa_          61 PSRFSGSGSGTDYTFTISSLQPEDIATYYCQQY   93 (109)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCCEEeeCCCCEeEEEEeeceeCcCceEEEeec
Confidence            455666666677889999999999999999864

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.10  E-value=0.0013  Score=33.73  Aligned_cols=33  Identities=33%  Similarity=0.451  Sum_probs=28.0

Q ss_pred             CcEEEEEeCCeEEEEEeccCCCCCeeeEEEeec
Q psy3272          68 DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        68 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      .++....++....|.|.++..+|+|.|.|.+..
T Consensus        58 ~rf~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   90 (108)
T d1nfde1          58 ERFSGSTSGTTATLTISGAQPEDEAAYYCLSSY   90 (108)
T ss_dssp             TTEEEEEETTEEEEEETTCCGGGCSEEEEEEEE
T ss_pred             ceeeecCCCCEeeeeEcCccccCCceEEEEeec
Confidence            466667777788999999999999999998764

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.10  E-value=0.0027  Score=32.48  Aligned_cols=35  Identities=26%  Similarity=0.374  Sum_probs=28.5

Q ss_pred             CCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        67 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ..++....++....|.|.++..+|+|.|.|.+...
T Consensus        61 ~~~fs~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~   95 (109)
T d1bwwa_          61 PSRFSGSGSGTDYTFTISSLQPEDIATYYCQQYQS   95 (109)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CCCEEeeCCCCEeEEEEeeceeCcCceEEEeecCC
Confidence            34555566777789999999999999999997753

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.10  E-value=0.0015  Score=33.68  Aligned_cols=35  Identities=31%  Similarity=0.281  Sum_probs=28.9

Q ss_pred             CCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        67 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ..++....++....|.|.++..+|+|.|.|.....
T Consensus        61 ~~rf~~s~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   95 (110)
T d1oaql_          61 PARFSGSLIGNKAALTITGAQTEDEAIYFCALWYS   95 (110)
T ss_dssp             CTTEEEEEETTEEEEEEESCCGGGCEEEEEEEEET
T ss_pred             ceeeeecccccceeeecCCCCccccEeEEEEcccC
Confidence            34666666777889999999999999999997754

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00061  Score=34.13  Aligned_cols=42  Identities=12%  Similarity=0.168  Sum_probs=28.4

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .+.|+|+|.....      ..........+.|.+++..|+|.|.|...
T Consensus        33 ~f~L~Keg~~~~~------~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2          33 MFLLLKEGRSSHV------QRGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             EEEEEEESSSCEE------EEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             EEEEEECCCccce------eecCCCceeEEEecccChhcCceEEEEeE
Confidence            3567776642111      11223467789999999999999999754

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.06  E-value=0.00044  Score=35.53  Aligned_cols=32  Identities=28%  Similarity=0.435  Sum_probs=25.6

Q ss_pred             CCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          19 DRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        19 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .++..........|.|.+++++|+|.|.|...
T Consensus        60 ~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d3cx5k1          60 SRFSGSGSGTDYSLTISNLEPEDIATYFCQHH   91 (107)
T ss_dssp             TTCCCEEETTEEEEECSCCCSCCCSEEEEEEC
T ss_pred             CCEEEEccCCEEEEEEeEeeecCCCcEEeeeC
Confidence            44554555667899999999999999999764

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.05  E-value=0.0018  Score=32.25  Aligned_cols=57  Identities=16%  Similarity=0.202  Sum_probs=34.8

Q ss_pred             EEEEeecCCcceeE-EEEEe---cccCCcEEEEE--eCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          45 YSCVADNNLGRAKK-YMELS---VSVSDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        45 y~C~~~~~~~~~~~-~~~v~---g~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      |..++.+..+.... .+.+.   ..+.+++....  ......|.|.++..+|+|.|.|.+...
T Consensus        17 ~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1          17 SFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             EEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             cEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            44455555555544 22231   12233443332  335678999999999999999998754

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.04  E-value=0.0049  Score=31.59  Aligned_cols=35  Identities=29%  Similarity=0.367  Sum_probs=28.9

Q ss_pred             CCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        67 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ..++....++....|.|.++..+|+|.|.|.+...
T Consensus        60 ~~r~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~~~   94 (111)
T d1rzfl1          60 PDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDS   94 (111)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEEEET
T ss_pred             ccceeeeCCCCEeeeEEeeeccccCcceEEeecCC
Confidence            34566667778889999999999999999998754

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.03  E-value=0.0022  Score=32.98  Aligned_cols=58  Identities=22%  Similarity=0.265  Sum_probs=39.1

Q ss_pred             EEEEEeecCCcceeEEEEE-----ecccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          44 NYSCVADNNLGRAKKYMEL-----SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~~~v-----~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .|.-++.+..+.....+-.     ......+.....++....|.|.++..+|++.|.|.+...
T Consensus        30 ~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA~~~~   92 (109)
T d1w72l1          30 RSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYCQVWDS   92 (109)
T ss_dssp             SCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             cceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEEEecCC
Confidence            4566666666655543322     112233555566777889999999999999999998754

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=0.001  Score=32.63  Aligned_cols=49  Identities=18%  Similarity=0.211  Sum_probs=35.2

Q ss_pred             ccCCcEEEEEeCC--eEEEEEeccCCCCCeeeEEEeecCccceee-EEEEEE
Q psy3272          65 SVSDRRLMETRGN--KHTLTIKNVQSTDFGNYSCVADNNLGRAKK-YMELSE  113 (115)
Q Consensus        65 ~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~~~~~~-~~~l~v  113 (115)
                      .|.....|...++  .+.|-+.++-..|.|.|+|.|.-..+..++ ++++.|
T Consensus        52 ~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s~vieSHSvti~V  103 (104)
T d1xaua_          52 GPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHV  103 (104)
T ss_dssp             BTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCChhheecceEEEEe
Confidence            4444556665543  467888999999999999999988776444 555544

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.02  E-value=0.0051  Score=31.55  Aligned_cols=59  Identities=29%  Similarity=0.386  Sum_probs=40.0

Q ss_pred             EEEEEeecCCcceeEEEEE-----ecccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          44 NYSCVADNNLGRAKKYMEL-----SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~~~v-----~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      .|.-++.+..+.....+-.     ......++..........|.|.++..+|+|.|.|.+.+..
T Consensus        33 ~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~~~   96 (112)
T d1lgva1          33 NLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADYYCSSYDGS   96 (112)
T ss_dssp             CCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             CcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCEEEEEeeecCC
Confidence            3556666666555542222     1123345566667788899999999999999999987544

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00085  Score=34.75  Aligned_cols=34  Identities=24%  Similarity=0.365  Sum_probs=27.9

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ..++..........|+|.+++++|+|.|.|.+..
T Consensus        65 ~~rfs~~~~~~~~~L~I~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          65 TQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALS   98 (114)
T ss_dssp             TTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CcEEEEECCCCChhcEEccCCCCCCEEEeEeEcC
Confidence            3456666666778999999999999999999764

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.01  E-value=0.001  Score=34.06  Aligned_cols=56  Identities=20%  Similarity=0.242  Sum_probs=36.0

Q ss_pred             EEEEeecCCcceeEEEEE-----ecccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeec
Q psy3272          45 YSCVADNNLGRAKKYMEL-----SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        45 y~C~~~~~~~~~~~~~~v-----~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      |.-++.+..+.....|..     ......++....++....|.|.++..+|+|.|.|.+..
T Consensus        32 ~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d3cx5k1          32 FLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQHHI   92 (107)
T ss_dssp             CEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEEEEECS
T ss_pred             CeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEEeeeCC
Confidence            344555555555543322     11122344455667788999999999999999998764

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.99  E-value=0.0024  Score=32.59  Aligned_cols=58  Identities=21%  Similarity=0.242  Sum_probs=35.1

Q ss_pred             eEEEEEeecCCcceeEE-EEEec----ccCCcEEE--EEeCCeEEEEEeccCCCCCeeeEEEeec
Q psy3272          43 GNYSCVADNNLGRAKKY-MELSV----SVSDRRLM--ETRGNKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        43 G~y~C~~~~~~~~~~~~-~~v~g----~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      ..|..++.+..+..... +....    ....+...  ...+....|.|.++..+|+|.|.|.+..
T Consensus        28 ~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (110)
T d1u3ha1          28 FDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAASA   92 (110)
T ss_dssp             EEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEEEECCEE
T ss_pred             CcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeEeeeecC
Confidence            35666676665555542 22211    11112222  2234567899999999999999999864

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00048  Score=34.73  Aligned_cols=44  Identities=18%  Similarity=0.219  Sum_probs=30.2

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      .+.|+|+|.....  . .   ..........|.+++.+|+|.|.|.+...
T Consensus        35 ~f~L~k~g~~~~~--~-~---~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2          35 RFSLAKEGELSLP--Q-H---QSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             EEEEEETTCSSCC--S-E---EECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             EEEEEECCcccce--E-E---cCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            3568888753222  1 1   12234577899999999999999998643

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.96  E-value=0.00043  Score=35.52  Aligned_cols=38  Identities=16%  Similarity=0.173  Sum_probs=27.2

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCccc---eeeEEEEEEe
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNLGR---AKKYMELSEL  114 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~---~~~~~~l~v~  114 (115)
                      ....|.|.+++.+|+|.|.|.+....+.   ....+.|.|.
T Consensus        77 ~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~~~~ltVt  117 (118)
T d1qfoa_          77 KVCNLLLKDLKPEDSGTYNFRFEISDSNRWLDVKGTTVTVT  117 (118)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEECC-CCEEECSSCEEEEEE
T ss_pred             CEEEEEECCCChhHCEEEEEEEEeCCCCeEEcCCCEEEEEe
Confidence            4557999999999999999999765433   2234556553

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.91  E-value=0.0039  Score=32.04  Aligned_cols=27  Identities=26%  Similarity=0.368  Sum_probs=23.3

Q ss_pred             CCeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          76 GNKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        76 ~~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      .....|.|.++..+|+|.|.|.+....
T Consensus        69 ~~~~~L~i~~~~~~Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          69 SGRSTLYIAASQPGDSATYLCAVRPTS   95 (113)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEEEESS
T ss_pred             CCEEEeeeecCCCCCCcEEeEeEecCC
Confidence            456789999999999999999987544

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.90  E-value=0.0034  Score=32.43  Aligned_cols=28  Identities=25%  Similarity=0.441  Sum_probs=23.6

Q ss_pred             EEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          23 METRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        23 ~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .........|.|.+++.+|+|.|.|.+.
T Consensus        68 ~~~~~~~~~L~I~~l~~~Dsa~YyCa~~   95 (117)
T d1dqta_          68 GTFNESRVNLTIQGLRAVDTGLYLCKVE   95 (117)
T ss_dssp             EEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EeCCCCEEEEEhhcCccccCEeEEEEEe
Confidence            3445667899999999999999999874

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.89  E-value=0.0011  Score=34.14  Aligned_cols=25  Identities=28%  Similarity=0.418  Sum_probs=22.0

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      .....|.|.++..+|+|.|.|.+..
T Consensus        69 ~~~~~L~i~~~~~~Dsg~YyCa~~~   93 (113)
T d2bnqd1          69 SGRSTLYIAASQPGDSATYLCAVRP   93 (113)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeeeecCCCCCCcEEeEeEec
Confidence            4567899999999999999999864

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.89  E-value=0.0055  Score=31.91  Aligned_cols=57  Identities=30%  Similarity=0.406  Sum_probs=36.4

Q ss_pred             EEEEEeecCCcceeEEEEE-----ecccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeec
Q psy3272          44 NYSCVADNNLGRAKKYMEL-----SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~~~v-----~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      .|.-++.+..+.....+-.     ......++.....+....|.|.++..+|+|.|.|.+..
T Consensus        31 ~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYyCa~~~   92 (119)
T d1f3rb2          31 NYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYN   92 (119)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEES
T ss_pred             ceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEEeeccC
Confidence            4555666555555443322     11112344444556677899999999999999998765

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.89  E-value=0.004  Score=32.19  Aligned_cols=34  Identities=35%  Similarity=0.494  Sum_probs=27.6

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      .+++..........|.|.++..+|++.|.|....
T Consensus        60 ~~~~~~~~~~~~~~L~I~~v~~~DsA~YyCA~~~   93 (114)
T d2rhea_          60 SDRFSASKSGTSASLAISGLESEDEADYYCAAWN   93 (114)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCcceecCCCCeeeeEecccCcccCceEEEeecC
Confidence            3456666666788999999999999999998753

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00091  Score=33.92  Aligned_cols=48  Identities=10%  Similarity=0.061  Sum_probs=26.1

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCC---eEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGN---KHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|.+||..+.............+.   .+.|.   +..++.+.|+|.+....
T Consensus        37 ~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~---v~~~~~~~ytC~V~H~s   87 (100)
T d1k5nb_          37 EVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTE---FTPTEKDEYACRVNHVT   87 (100)
T ss_dssp             EEEEEETTEECTTCEECCCEECTTSCEEEEEEEE---ECCCSSCCEEEEEECTT
T ss_pred             EEEEEECCEecCCccccceecCCCCcEEEEEEeE---ECCCCCCEEEEEEEeCC
Confidence            68999999988642111111110011   12233   34456678999998643

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.88  E-value=0.0071  Score=30.95  Aligned_cols=59  Identities=10%  Similarity=0.141  Sum_probs=35.4

Q ss_pred             eEEEEEeecCCcceeEEE-EE-------ecccCCcEEEE-EeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          43 GNYSCVADNNLGRAKKYM-EL-------SVSVSDRRLME-TRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        43 G~y~C~~~~~~~~~~~~~-~v-------~g~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ..|.-++.+..+.....| .+       .+......... .......|.|.++..+|+|.|.|.+...
T Consensus        27 ~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsavYyCA~~~~   94 (112)
T d2bnub1          27 HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVYFCASSYV   94 (112)
T ss_dssp             CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGCEEEEEEEECS
T ss_pred             ccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHCEEEEEeecCC
Confidence            345666666666665522 22       12222222222 2223457999999999999999988643

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.0014  Score=33.10  Aligned_cols=25  Identities=16%  Similarity=0.293  Sum_probs=21.2

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecC
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      ......|.+++..|+|.|+|.+...
T Consensus        58 ~~a~F~l~~v~~~~~G~Y~C~y~~~   82 (98)
T d1ugna2          58 SRAIFSVGPVSPSRRWWYRCYAYDS   82 (98)
T ss_dssp             CEEEEEECCCCTTSCEEEEEEEECT
T ss_pred             eEEEEEeeecccCCCeEEEEeeEcC
Confidence            4567899999999999999998643

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.87  E-value=0.0022  Score=32.81  Aligned_cols=33  Identities=30%  Similarity=0.461  Sum_probs=26.9

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..++..........|+|.++.++|+|.|.|...
T Consensus        59 ~~~~~~~~~~~~~~L~I~~l~~~DsA~YyCa~~   91 (107)
T d1tjgl1          59 PSRFSGSGSGTEFTLTISTLRPEDFATYYCQQL   91 (107)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             CcceEEeccCCEEEEEeccceeCcCceEEEEEC
Confidence            445666666778899999999999999999754

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.87  E-value=0.0017  Score=33.34  Aligned_cols=25  Identities=20%  Similarity=0.343  Sum_probs=21.5

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      .....|.|.+++++|+|.|.|.+..
T Consensus        66 ~~~~~L~I~~~~~~Dsa~YyCa~~~   90 (110)
T d2esvd1          66 RKSSTLILPHATLRDTAVYYCIVVR   90 (110)
T ss_dssp             CSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCeeeehhcccccCCceEEEEEEeC
Confidence            4567899999999999999998753

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.84  E-value=0.0077  Score=30.73  Aligned_cols=59  Identities=12%  Similarity=0.171  Sum_probs=36.2

Q ss_pred             eEEEEEeecCCcceeEEE-EEe--c--ccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          43 GNYSCVADNNLGRAKKYM-ELS--V--SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        43 G~y~C~~~~~~~~~~~~~-~v~--g--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ..|..++.+..+.....+ ...  +  ....+.....+.....|.|.++..+|+|.|.|.+...
T Consensus        28 ~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   91 (110)
T d2esvd1          28 NEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYYCIVVRS   91 (110)
T ss_dssp             TEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEEEEEEES
T ss_pred             CCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEEEEEeCC
Confidence            345566666655544422 221  1  1222333333456778999999999999999998643

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.84  E-value=0.0033  Score=32.06  Aligned_cols=33  Identities=33%  Similarity=0.546  Sum_probs=27.8

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..++..........|.|.+++++|+|.|.|...
T Consensus        59 ~~~fs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d1j1pl_          59 PSRFSGSGSGTDFTLSINSVETEDFGMYFCQQA   91 (107)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCcceecccCCEEEEEEcccCcCCCEEEEEEcC
Confidence            456777677778899999999999999999764

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.81  E-value=0.0083  Score=30.71  Aligned_cols=33  Identities=27%  Similarity=0.368  Sum_probs=26.9

Q ss_pred             cEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          69 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        69 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ++....++....|.|.++..+|+|.|.|.+.+.
T Consensus        65 ~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   97 (111)
T d1j05a_          65 RFSGTGSRTDFTLIIDPVEADDVATYYCQQTNE   97 (111)
T ss_dssp             TEEEECSSSEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             cEEEecCCCEEEEEEcccccccCccEEEeecCC
Confidence            444445567789999999999999999988765

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.81  E-value=0.0026  Score=32.47  Aligned_cols=34  Identities=21%  Similarity=0.384  Sum_probs=28.0

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      .+++..........|.|.++.++|+|.|.|.+..
T Consensus        58 ~~~~~~~~s~~~~~L~I~~~~~~DsA~YyCa~~~   91 (106)
T d1a0ql1          58 PSRFRGSGSGRDYSFSISNLEPEDIATYYCLQYY   91 (106)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGCSEEEEEECS
T ss_pred             CcceEeecCCCEeeeEehhhcccCCEeEEEEEeC
Confidence            4566666667788999999999999999998643

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.80  E-value=0.0085  Score=30.67  Aligned_cols=26  Identities=12%  Similarity=0.408  Sum_probs=22.2

Q ss_pred             CCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          76 GNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        76 ~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      +....|.|.++..+|+|.|.|.+...
T Consensus        70 ~~~~~L~i~~~~~~Dsa~YyCa~~~~   95 (113)
T d1j8he1          70 KERFSLILESASTNQTSMYLCASSST   95 (113)
T ss_dssp             TTBCEEEESSCCGGGCEEEEEEEECT
T ss_pred             CcEeeeEeccCccCCcccEEeeEccC
Confidence            34568999999999999999998754

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.79  E-value=0.0088  Score=30.60  Aligned_cols=58  Identities=10%  Similarity=0.188  Sum_probs=36.6

Q ss_pred             EEEEEeecCCcceeEEE-EE-------ecccCCcEEEEE-eCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          44 NYSCVADNNLGRAKKYM-EL-------SVSVSDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~~-~v-------~g~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .|..++.+..+.....+ ..       .+....++.... +.....|.|.++..+|+|.|.|.+...
T Consensus        28 ~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~~~   94 (113)
T d2ntsp1          28 RSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSALYLCASSLA   94 (113)
T ss_dssp             CEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccceeeeeeeeCC
Confidence            45667777666666522 22       112223333333 234678999999999999999998754

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.78  E-value=0.0017  Score=33.67  Aligned_cols=39  Identities=18%  Similarity=0.193  Sum_probs=28.5

Q ss_pred             cCCcEEEEEe--CCeEEEEEeccCCCCCeeeEEEeecCccc
Q psy3272          66 VSDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLGR  104 (115)
Q Consensus        66 ~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n~~~~  104 (115)
                      ...++....+  .....|.|.++..+|+|.|.|.+....+.
T Consensus        61 ~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~~~~  101 (116)
T d1tvda_          61 TQGRFSVKHILTQKAFHLVISPVRTEDSATYYCAFTLPPPT  101 (116)
T ss_dssp             GTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECTTTT
T ss_pred             cceEEEEEecCceeEEeeeecCccccccccceeeEecCCCC
Confidence            3446555443  34568999999999999999998765443

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.77  E-value=0.0032  Score=32.25  Aligned_cols=57  Identities=18%  Similarity=0.170  Sum_probs=36.1

Q ss_pred             EEEEEeecCCcceeE-EEEEec----ccCCcEEEEE--eCCeEEEEEeccCCCCCeeeEEEeec
Q psy3272          44 NYSCVADNNLGRAKK-YMELSV----SVSDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~-~~~v~g----~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      .|..++.+..+.... .+...+    ...+++....  .+....|.|.++..+|+|.|.|.+..
T Consensus        30 ~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          30 DYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVYFCAAME   93 (111)
T ss_dssp             CEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEES
T ss_pred             CeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEEEeeccC
Confidence            456666666665554 222211    1122333332  34578999999999999999998874

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.75  E-value=0.0097  Score=30.68  Aligned_cols=57  Identities=30%  Similarity=0.352  Sum_probs=38.6

Q ss_pred             EEEEEeecCCcceeEEEEE-----ecccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeec
Q psy3272          44 NYSCVADNNLGRAKKYMEL-----SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~~~v-----~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      .|.-++.+..+.....+..     ......++....++....|.|.++..+|++.|.|.+..
T Consensus        32 ~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~YyCA~~~   93 (114)
T d2rhea_          32 NSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYYCAAWN   93 (114)
T ss_dssp             SCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEEEeecC
Confidence            3455666665555542221     11223356666677888999999999999999999864

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00072  Score=35.20  Aligned_cols=25  Identities=24%  Similarity=0.449  Sum_probs=21.9

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecC
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      ....|+|.+++.+|+|.|.|.+...
T Consensus        81 ~~~sL~I~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          81 KNCTLSIRDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEET
T ss_pred             CEEEEEECCCChHHCEEEEEEEEeC
Confidence            4578999999999999999999643

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.75  E-value=0.007  Score=31.14  Aligned_cols=59  Identities=24%  Similarity=0.342  Sum_probs=39.2

Q ss_pred             EEEEEeecCCcceeEEEEE-----ecccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          44 NYSCVADNNLGRAKKYMEL-----SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~~~v-----~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      .|.-++.+..+.....+-.     ...-..++....++....|.|.++..+|+|.|.|...+..
T Consensus        37 ~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYyCa~~~~~  100 (113)
T d1n4xl_          37 TYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHF  100 (113)
T ss_dssp             CCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             eEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcccCEEEEEEECCCC
Confidence            4556666666665543222     1122335555566777899999999999999999766543

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.73  E-value=0.0041  Score=31.84  Aligned_cols=33  Identities=27%  Similarity=0.513  Sum_probs=27.3

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..++..........|.|.++.++|+|.|.|.+.
T Consensus        59 ~~~fs~~~~~~~~~L~I~~~~~~DSa~YyCA~~   91 (109)
T d1mqkl_          59 PSRFSGSGSGTQFSLKINSLLPEDFGSYYCQHH   91 (109)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCCEEEeccCCEEEEEEccccccCCeeEEEeee
Confidence            355666566778899999999999999999875

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=96.72  E-value=0.0042  Score=31.96  Aligned_cols=46  Identities=24%  Similarity=0.397  Sum_probs=31.4

Q ss_pred             ceEEEE--CCEE----eCCCCCCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEee
Q psy3272           3 MMSWYQ--DTFL----IEPSVSDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus         3 ~v~W~~--~~~~----~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .+.||+  .+..    +..  ..++....  ......|+|.+++.+|+|.|.|.+.
T Consensus        33 ~~~Wyrq~~g~~~~~~~~~--~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~   86 (113)
T d1vesa_          33 DTGWYRTKLGSTNEQSISI--GGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAF   86 (113)
T ss_dssp             EEEEEEEETTCCCCEECCC--BTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ccceeeeeccccceeeeee--cccccceeECCCCceeeeecccccCCcceEeeeee
Confidence            478997  3321    222  45554443  2345689999999999999999985

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00076  Score=35.10  Aligned_cols=26  Identities=23%  Similarity=0.394  Sum_probs=22.2

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      ....|.|.++..+|+|.|.|.+....
T Consensus        81 ~~~sL~I~~v~~~DsG~Y~C~v~~~~  106 (121)
T d2g5ra1          81 KNCTLSIRDARMSDAGRYFFRMEKGN  106 (121)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETT
T ss_pred             CEEEEEECCCChHHCEEEEEEEEeCC
Confidence            35679999999999999999997543

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.69  E-value=0.011  Score=30.21  Aligned_cols=58  Identities=22%  Similarity=0.367  Sum_probs=35.3

Q ss_pred             EEEEEeecCCcceeEE-EEE--------ecccCCcEEEEEe-CCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          44 NYSCVADNNLGRAKKY-MEL--------SVSVSDRRLMETR-GNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~-~~v--------~g~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .|.-++.+..+..... +.+        .+....++..... +....|.|.++..+|+|.|.|.+...
T Consensus        28 ~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~~   95 (111)
T d2esve1          28 DNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELEDSGVYFCASSQD   95 (111)
T ss_dssp             SEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGGCEEEEEEEESS
T ss_pred             ceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCCCceEEEeeeCC
Confidence            3555666666555542 222        1222334433332 23468999999999999999987643

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=96.68  E-value=0.0015  Score=32.96  Aligned_cols=46  Identities=13%  Similarity=0.044  Sum_probs=27.7

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      .+.|+|+|.....   ...............|..+...|+|.|.|.+..
T Consensus        35 ~f~L~k~g~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~   80 (99)
T d1nkra2          35 MYHLSREGEAHER---RLPAGPKVNGTFQADFPLGPATHGGTYRCFGSF   80 (99)
T ss_dssp             EEEEEETTCSSCE---EEECEEEETTEEEEEEEEEECCSCEEEEEEEEE
T ss_pred             EEEEEECCCcccc---EEEccccCCccEEEEEeccccccCEEEEEEeec
Confidence            4567787753221   000011233456667888888999999998764

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.67  E-value=0.0035  Score=32.25  Aligned_cols=35  Identities=20%  Similarity=0.312  Sum_probs=26.3

Q ss_pred             cEEEEEe--CCeEEEEEeccCCCCCeeeEEEeecCcc
Q psy3272          69 RRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLG  103 (115)
Q Consensus        69 ~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n~~~  103 (115)
                      ++.+..+  .....|+|.++..+|+|.|.|.......
T Consensus        60 R~sis~d~~~~~~~lti~~L~~eDsa~YyCa~~~~~~   96 (110)
T d1u9ka_          60 KFTLKHDPSEAMLQVQMTDLQVTDSGLYRCVIYHPPN   96 (110)
T ss_dssp             TEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTS
T ss_pred             EEEEEEECCCCEEEEEECccccCCCEEEEEEEeCCCC
Confidence            4445443  3567899999999999999999865443

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.64  E-value=0.012  Score=30.18  Aligned_cols=57  Identities=12%  Similarity=0.037  Sum_probs=35.6

Q ss_pred             EEEeecCCcceeEEE-EE-----ecccCCcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          46 SCVADNNLGRAKKYM-EL-----SVSVSDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        46 ~C~~~~~~~~~~~~~-~v-----~g~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      ..++.+..+.....+ ..     ......++......  ....|.|.++..+|+|.|.|.+....
T Consensus        32 ~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~~   96 (114)
T d3bp5a1          32 LNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLH   96 (114)
T ss_dssp             EEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEECSS
T ss_pred             EEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCCCeEEEEEEEeCC
Confidence            345555555544322 22     11233455555433  45789999999999999999987654

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.63  E-value=0.0019  Score=32.95  Aligned_cols=33  Identities=30%  Similarity=0.372  Sum_probs=27.4

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..++..........|.|.+++++|+|.|.|...
T Consensus        58 ~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   90 (106)
T d1lk3l1          58 PARFSGSGSGTDFTLTIDPVEADDTAIYFCQQS   90 (106)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCceeeecCCCEEEeEECCcChhhCCCcccccc
Confidence            456666666778899999999999999999754

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.62  E-value=0.0063  Score=31.14  Aligned_cols=34  Identities=29%  Similarity=0.369  Sum_probs=27.9

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      .+++..........|.|.+++++|+|.|.|....
T Consensus        60 ~~r~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~~   93 (111)
T d1rzfl1          60 PDRFSGSKSGTSATLGITGLQTGDEADYYCGTWD   93 (111)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEEEE
T ss_pred             ccceeeeCCCCEeeeEEeeeccccCcceEEeecC
Confidence            4556666667788999999999999999998753

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.61  E-value=0.013  Score=30.14  Aligned_cols=58  Identities=14%  Similarity=0.072  Sum_probs=36.7

Q ss_pred             eEEEEEeecCCcceeEEEEE--------ecccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeec
Q psy3272          43 GNYSCVADNNLGRAKKYMEL--------SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        43 G~y~C~~~~~~~~~~~~~~v--------~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      ..|..++.+..+.....+..        ...+........+.....|.|.++..+|+|.|.|.+..
T Consensus        31 ~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   96 (117)
T d1dqta_          31 EVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTGLYLCKVEL   96 (117)
T ss_dssp             EEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             ceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccCEeEEEEEec
Confidence            34566776665554432222        11222233344556678999999999999999998864

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.55  E-value=0.0022  Score=33.15  Aligned_cols=26  Identities=19%  Similarity=0.149  Sum_probs=22.0

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      ....|.|.++..+|+|.|.|.+....
T Consensus        71 ~~~~L~I~~~~~~Dsg~YyCa~~~~~   96 (115)
T d1lp9e1          71 SSFHLQKSSAQLSDSALYYCALFLAS   96 (115)
T ss_dssp             TBCCEEESSCCGGGCEEEEEEEEECS
T ss_pred             CeEEeeccccccccCccceEEEEcCC
Confidence            45679999999999999999886544

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.0021  Score=33.08  Aligned_cols=32  Identities=28%  Similarity=0.429  Sum_probs=24.0

Q ss_pred             CEEEEE--eCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          20 RRLMET--RGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        20 ~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ++.+..  ......|+|.+++.+|+|.|.|.+..
T Consensus        64 R~~~~~~~~~~~~~Lti~~l~~~Dsg~Y~Cav~~   97 (113)
T d1smoa_          64 RIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQ   97 (113)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGGGCEEEEEEECC
T ss_pred             eEEEEEECCCCEEEEEEccCCcccCceEEEEEEC
Confidence            444443  23446799999999999999999854

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.55  E-value=0.0031  Score=32.49  Aligned_cols=59  Identities=24%  Similarity=0.339  Sum_probs=38.4

Q ss_pred             eEEEEEeecCCcceeEEEEE-----ecccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          43 GNYSCVADNNLGRAKKYMEL-----SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        43 G~y~C~~~~~~~~~~~~~~v-----~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ..|.-++.+..+.....+-.     ......++....++....|.|.++..+|++.|.|.....
T Consensus        35 ~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~DsAvYyCa~~~~   98 (112)
T d1mjul1          35 NTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVGVYYCLQHLE   98 (112)
T ss_dssp             CBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccCCceEEEEeCCC
Confidence            34555566655555442211     112233566667778889999999999999999976543

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.0059  Score=30.41  Aligned_cols=49  Identities=12%  Similarity=0.238  Sum_probs=28.5

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCC-----eEEEEEecCCCCCCeEEEEEeecCCcc
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGN-----KHTLTIKNVQSTDFGNYSCVADNNLGR   55 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~y~C~~~~~~~~   55 (115)
                      |.|+|+++|..+..  ...........     .+.|.+.   ..+...|+|.+....-.
T Consensus        32 ~~V~W~~n~~~~~~--~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~   85 (95)
T d1dr9a2          32 PHLSWLENGEELNA--INTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLR   85 (95)
T ss_dssp             EEEEEEESSCEECC--SEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCC
T ss_pred             CEEEEecCCcEecc--cceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCC
Confidence            58999999988764  22111111111     2445553   34567999999865533

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.54  E-value=0.014  Score=29.78  Aligned_cols=57  Identities=26%  Similarity=0.297  Sum_probs=35.0

Q ss_pred             EEEEEeecCCcceeEE-EEE--------ecccCCcEEEEEe-CCeEEEEEeccCCCCCeeeEEEeec
Q psy3272          44 NYSCVADNNLGRAKKY-MEL--------SVSVSDRRLMETR-GNKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~-~~v--------~g~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      .|.-++.+..+..... +..        .+.+..++..... .....|.|.++..+|+|.|.|.+..
T Consensus        28 ~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          28 VSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQEDSAVYLCASSL   94 (112)
T ss_dssp             CEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGGCEEEEEEEES
T ss_pred             CEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCCCEEEEEeeeC
Confidence            3455667666655542 222        1233334333322 2356899999999999999999864

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.54  E-value=0.015  Score=30.28  Aligned_cols=56  Identities=21%  Similarity=0.268  Sum_probs=36.2

Q ss_pred             EEEEeecCCcceeEEE-EE---------ecccCCcEEEEEe--CCeEEEEEeccCCCCCeeeEEEeec
Q psy3272          45 YSCVADNNLGRAKKYM-EL---------SVSVSDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        45 y~C~~~~~~~~~~~~~-~v---------~g~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      |.-++.+..+.....| .+         .+.+..++....+  .....|.|.++..+|++.|.|....
T Consensus        34 ~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          34 SVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQDIATYYCALWE  101 (123)
T ss_dssp             CEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             eEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccccccCcEEEEeeeC
Confidence            4445555555554422 22         1233446666654  3467899999999999999998754

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.54  E-value=0.014  Score=29.69  Aligned_cols=58  Identities=9%  Similarity=0.149  Sum_probs=37.6

Q ss_pred             EEEEEeecCCcceeEEEE-E--------ecccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          44 NYSCVADNNLGRAKKYME-L--------SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~~~-v--------~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .|.-++.+..+.....+- .        .+.+..............|.|.++..+|+|.|.|.+...
T Consensus        30 ~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   96 (110)
T d2aq2a1          30 NNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQTSVYFCASGGG   96 (110)
T ss_dssp             SEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhhCEEEEEeeCCC
Confidence            355566666666554222 2        223333333344556788999999999999999998754

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=96.53  E-value=0.0091  Score=30.54  Aligned_cols=34  Identities=35%  Similarity=0.501  Sum_probs=27.9

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      .+++..........|.|.+++++|+|.|.|....
T Consensus        61 ~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   94 (112)
T d1lgva1          61 SDRFSGSKSGNSASLTISGLQAEDEADYYCSSYD   94 (112)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             cccEEEECCCCEeeEEeCcCccccCEEEEEeeec
Confidence            4556666667788999999999999999998754

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.52  E-value=0.0018  Score=32.66  Aligned_cols=46  Identities=11%  Similarity=0.143  Sum_probs=26.4

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCC-----eEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGN-----KHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|.++|..+..  ..........+     .+.|.+   ..++.+.|+|.+....
T Consensus        36 ~V~W~~~g~~~~~--~~~~~~~~~~dgtf~~~s~l~v---~~~~~~~ytC~V~H~s   86 (99)
T d1lk2b_          36 EIQMLKNGKKIPK--VEMSDMSFSKDWSFYILAHTEF---TPTETDTYACRVKHDS   86 (99)
T ss_dssp             EEEEEETTEECTT--CEEEEEEECTTCCEEEEEEEEE---CCCSSCCEEEEEECTT
T ss_pred             EEEEeeCCeecCC--cEECceeECCCCCEEEEEEeEe---cCcCCCEEEEEEEeCC
Confidence            6899999998765  22211111111     123333   3455668999997643

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.50  E-value=0.015  Score=29.73  Aligned_cols=59  Identities=12%  Similarity=0.200  Sum_probs=37.9

Q ss_pred             EEEEEeecCCcceeEEE-EE-------ecccCCcEEEEEe-CCeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          44 NYSCVADNNLGRAKKYM-EL-------SVSVSDRRLMETR-GNKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~~-~v-------~g~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      .|..++.+..+.....| ..       .+....++..... +....|.|.++..+|+|.|.|.+....
T Consensus        30 ~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~~   97 (113)
T d1nfdb1          30 SNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMYFCASSLRW   97 (113)
T ss_dssp             CEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGGCEEECEEEESSS
T ss_pred             CEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCCceeEEEEeecCC
Confidence            56777877776665522 22       2223334433332 345689999999999999999876543

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.50  E-value=0.009  Score=30.60  Aligned_cols=59  Identities=10%  Similarity=0.107  Sum_probs=36.6

Q ss_pred             EEEEEeecCCcceeEE-EEEec-----ccCCcEEEEE--eCCeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          44 NYSCVADNNLGRAKKY-MELSV-----SVSDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~-~~v~g-----~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      .|..++.+..+..... +....     ....++....  ......|.|.++..+|+|.|.|.+....
T Consensus        30 ~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~~   96 (115)
T d1fo0a_          30 YFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRGDY   96 (115)
T ss_dssp             CEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECCC
T ss_pred             CCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCccccccccceeecCC
Confidence            4566777766555542 22211     1122333333  3356789999999999999999987543

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.49  E-value=0.016  Score=29.88  Aligned_cols=57  Identities=21%  Similarity=0.170  Sum_probs=36.1

Q ss_pred             EEEEeecCCcceeEEE-EE---------ecccCCcEEEEEe-CCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          45 YSCVADNNLGRAKKYM-EL---------SVSVSDRRLMETR-GNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        45 y~C~~~~~~~~~~~~~-~v---------~g~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      |.-++.+..+.....+ .+         .+....++..... +....|.|.++..+|+|.|.|.+...
T Consensus        32 ~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          32 TMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPEDSGFYVCSALAG   99 (118)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccccccCceEEEEEecC
Confidence            4445666665554422 22         1233445555433 34568999999999999999998654

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.49  E-value=0.0037  Score=32.10  Aligned_cols=34  Identities=32%  Similarity=0.280  Sum_probs=28.3

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      .+++..........|.|.++.++|+|.|.|....
T Consensus        61 ~~rf~~s~~~~~~~L~I~~~~~~Dsa~YyCa~~~   94 (110)
T d1oaql_          61 PARFSGSLIGNKAALTITGAQTEDEAIYFCALWY   94 (110)
T ss_dssp             CTTEEEEEETTEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             ceeeeecccccceeeecCCCCccccEeEEEEccc
Confidence            4666766667889999999999999999998653

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.0026  Score=31.79  Aligned_cols=51  Identities=12%  Similarity=0.285  Sum_probs=26.2

Q ss_pred             ceEEEECCEEeCCC-CCCCEEEEEeCC-eEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPS-VSDRRLMETRGN-KHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~-~~~~~~~~~~~~-~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|++||+.+... ............ -.....-.+...+...|+|.+....
T Consensus        33 ~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~s   85 (94)
T d1de4a1          33 TMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPG   85 (94)
T ss_dssp             EEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTT
T ss_pred             EEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            78999999987531 011111111111 1111122334455668999998653

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.45  E-value=0.0018  Score=33.33  Aligned_cols=60  Identities=15%  Similarity=0.312  Sum_probs=36.0

Q ss_pred             EEEEEeecCCcceeEEEEE--------ecccCCcEEEEE-eCCeEEEEEeccCCCCCeeeEEEeecCcc
Q psy3272          44 NYSCVADNNLGRAKKYMEL--------SVSVSDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNNLG  103 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~~~v--------~g~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~n~~~  103 (115)
                      .|..++.+..+.....+-.        .+.......... +.....|.|..+..+|+|.|.|.+....+
T Consensus        27 ~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~~~~   95 (112)
T d2cdeb1          27 DKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTSQYLCASSENIG   95 (112)
T ss_dssp             SEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTCSEEEEEEECSSS
T ss_pred             ccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccccccEEEEEecCCC
Confidence            4666777766665543322        112122222111 22446799999999999999999876543

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.44  E-value=0.017  Score=29.55  Aligned_cols=58  Identities=10%  Similarity=0.201  Sum_probs=35.3

Q ss_pred             EEEEEeecCCcceeEEEEE--------ecccCCcEEEEE-eCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          44 NYSCVADNNLGRAKKYMEL--------SVSVSDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~~~v--------~g~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .|.-++.+..+.....+..        .+.......... ......|.|.++..+|+|.|.|.+...
T Consensus        28 ~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DSa~YyCa~~~~   94 (114)
T d1ogae1          28 DAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAFYLCASSSR   94 (114)
T ss_dssp             SEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEEEEEEEESS
T ss_pred             CcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCceeEEEeeccC
Confidence            3566677766655542222        112222332222 234567999999999999999987754

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.44  E-value=0.015  Score=29.97  Aligned_cols=33  Identities=30%  Similarity=0.433  Sum_probs=24.5

Q ss_pred             CCEEEEEe-CCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          19 DRRLMETR-GNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        19 ~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      .++..... .....|+|.++.++|+|.|.|.+..
T Consensus        65 ~~f~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~   98 (118)
T d2ij0c1          65 DKFLINHASPTLSTLTVTSAHPEDSGFYVCSALA   98 (118)
T ss_dssp             TTEEEEECSSSEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ccceeeccccccccccccccccccCceEEEEEec
Confidence            44554432 3356799999999999999998754

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.43  E-value=0.0092  Score=30.27  Aligned_cols=33  Identities=33%  Similarity=0.411  Sum_probs=27.7

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..++..........|+|.++.++|+|.|.|...
T Consensus        59 ~~~~~~~~~~~~~~L~I~~l~~~DSa~YyCa~~   91 (107)
T d1kcvl1          59 PDRFTGSGSATDFTLTISSVQADDDADYYCGQS   91 (107)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             cceEEeeccCCeeecEEHhheecCCceEEEEec
Confidence            456666666778899999999999999999864

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.42  E-value=0.0054  Score=31.95  Aligned_cols=33  Identities=30%  Similarity=0.386  Sum_probs=25.9

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..++..........|.|.++.++|+|.|.|...
T Consensus        59 ~~~fs~~~~~~~~~L~I~~~~~~DsavYyCa~~   91 (119)
T d1f3rb2          59 PSRFSGSGSGTDYTLTISSLQPEDVATYFCYQY   91 (119)
T ss_dssp             CTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEE
T ss_pred             eeeecccCCCCEEEEEcccCccCCCeEEEeecc
Confidence            445555555566789999999999999999754

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.42  E-value=0.0062  Score=31.29  Aligned_cols=32  Identities=34%  Similarity=0.537  Sum_probs=25.6

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEe
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVA   49 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   49 (115)
                      ..++..........|.|.++.++|++.|.|..
T Consensus        64 ~~r~~~~~s~~~~~L~Is~~~~~DsAvYyCa~   95 (112)
T d1mjul1          64 PDRFSGSGSGTAFTLRISRVEAEDVGVYYCLQ   95 (112)
T ss_dssp             CTTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCcEEeecCCCEEEEEECCccccCCceEEEEe
Confidence            34555555667788999999999999999964

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.42  E-value=0.0061  Score=31.38  Aligned_cols=33  Identities=33%  Similarity=0.530  Sum_probs=26.6

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .+++..........|.|.++.++|+|.|.|...
T Consensus        65 ~~~fs~~~~~~~~~L~I~~~~~~DsavYyCa~~   97 (113)
T d1n4xl_          65 PDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQG   97 (113)
T ss_dssp             CTTEEEEECSSEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCCeeeeccCCcccCccCCCCcccCEEEEEEEC
Confidence            455666556677899999999999999999643

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.41  E-value=0.0056  Score=31.37  Aligned_cols=32  Identities=25%  Similarity=0.300  Sum_probs=25.6

Q ss_pred             CCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          19 DRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        19 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .++..........|.|.++..+|+|.|.|.+.
T Consensus        64 ~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   95 (111)
T d1j05a_          64 VRFSGTGSRTDFTLIIDPVEADDVATYYCQQT   95 (111)
T ss_dssp             TTEEEECSSSEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CcEEEecCCCEEEEEEcccccccCccEEEeec
Confidence            34555555567899999999999999999764

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.018  Score=29.59  Aligned_cols=27  Identities=33%  Similarity=0.567  Sum_probs=22.9

Q ss_pred             eCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          75 RGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        75 ~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      +.....|.|.++..+|+|.|.|.+...
T Consensus        71 ~~~~~~L~I~~l~~~Dsa~YyCa~~~~   97 (118)
T d1i8lc_          71 SGNQVNLTIQGLRAMDTGLYICKVELM   97 (118)
T ss_dssp             CSSEEEEEECSCCGGGCEEEEEEEEEE
T ss_pred             CCCEEEEEeeccccCCCEEEEEeEecc
Confidence            345678999999999999999988754

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.40  E-value=0.0023  Score=32.99  Aligned_cols=27  Identities=37%  Similarity=0.612  Sum_probs=22.7

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCcc
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNLG  103 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~  103 (115)
                      ....|.|.++..+|+|.|.|.+....+
T Consensus        69 ~~~~L~I~~~~~~Dsa~YyCa~~~~~~   95 (113)
T d1h5ba_          69 RYSTLHIRDAQLEDSGTYFCAAEASSG   95 (113)
T ss_dssp             SEEEEEECSCCGGGCEEEEEEEECSSS
T ss_pred             ceeEEEECCCCHhHCEEEEEEecCCCC
Confidence            456799999999999999999876543

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.39  E-value=0.0016  Score=34.08  Aligned_cols=25  Identities=28%  Similarity=0.436  Sum_probs=21.5

Q ss_pred             CCeEEEEEeccCCCCCeeeEEEeec
Q psy3272          76 GNKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        76 ~~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      +....|.|.++..+|+|.|.|.+..
T Consensus        79 ~~~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          79 NNKYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEeEEEEcccccCCCEEEEeeEeC
Confidence            3456899999999999999998763

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.39  E-value=0.0023  Score=33.08  Aligned_cols=24  Identities=21%  Similarity=0.326  Sum_probs=20.6

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeec
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ....|.|.++.++|+|.|.|.+..
T Consensus        71 ~~~~L~I~~~~~~Dsg~YyCa~~~   94 (115)
T d1i9ea_          71 SSFHLRKASVHWSDSAVYFCAVSG   94 (115)
T ss_dssp             TBCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CEEEEecccccccccceecccccC
Confidence            446799999999999999998653

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=96.39  E-value=0.0034  Score=32.04  Aligned_cols=33  Identities=33%  Similarity=0.488  Sum_probs=26.9

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .+++..........|+|.++.++|+|.|.|...
T Consensus        60 ~~~~s~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   92 (108)
T d2fx7l1          60 ADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQY   92 (108)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             ccceeeecCCCEEEEEehHheecccEEEeeecC
Confidence            455666556677899999999999999999864

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.34  E-value=0.0041  Score=31.67  Aligned_cols=33  Identities=33%  Similarity=0.464  Sum_probs=27.1

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .+++..........|.|.+++++|+|.|.|...
T Consensus        58 ~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   90 (106)
T d1op3k1          58 PSRFSGSGSGTEFTLTISGLQFDDFATYHCQHY   90 (106)
T ss_dssp             CTTEEEEEETTEEEEEEESCCGGGCSEEEEEEE
T ss_pred             CCceeeeccCCEEEEEEccccccCCCcEeeeeC
Confidence            456666666677889999999999999999764

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.31  E-value=0.012  Score=29.92  Aligned_cols=33  Identities=33%  Similarity=0.469  Sum_probs=27.8

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .+++..........|.|.+++++|+|.|.|...
T Consensus        57 ~~rf~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~   89 (108)
T d1nfde1          57 PERFSGSTSGTTATLTISGAQPEDEAAYYCLSS   89 (108)
T ss_dssp             CTTEEEEEETTEEEEEETTCCGGGCSEEEEEEE
T ss_pred             cceeeecCCCCEeeeeEcCccccCCceEEEEee
Confidence            456776666778899999999999999999865

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=96.31  E-value=0.0073  Score=30.26  Aligned_cols=51  Identities=14%  Similarity=0.212  Sum_probs=26.8

Q ss_pred             ceEEEECCEEeCCCC-CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSV-SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|++||..+.... .........+.-.....-.+...+...|+|.+....
T Consensus        36 ~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~s   87 (98)
T d1d5mb1          36 EVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS   87 (98)
T ss_dssp             EEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTT
T ss_pred             EEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECC
Confidence            689999998775310 000000001111222222445666779999998643

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.30  E-value=0.0041  Score=31.74  Aligned_cols=33  Identities=42%  Similarity=0.547  Sum_probs=27.4

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..++..........|.|.++.++|++.|.|.+.
T Consensus        59 ~~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa~~   91 (107)
T d1mexl1          59 PDRFTGSGSGTDFTLTINNVQSEDLAEYFCQQY   91 (107)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             CCCeeecCCCCeeeeeechhheecceeEEEeEC
Confidence            456666666678899999999999999999754

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.27  E-value=0.0042  Score=31.44  Aligned_cols=33  Identities=24%  Similarity=0.293  Sum_probs=26.2

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..++..........|.|.++.++|+|.|.|...
T Consensus        57 ~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   89 (104)
T d1yqvl1          57 PVRFSGSGSGTSYSLTISSMETEDAATYYCQQW   89 (104)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CceEEEecCCCEEEEEecccCcccCCeEEEEec
Confidence            344555556677899999999999999999764

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0014  Score=33.51  Aligned_cols=50  Identities=12%  Similarity=0.118  Sum_probs=26.7

Q ss_pred             ceEEEECCEEeCCCCCCCEEEE--EeCCeEEEEEecCCCCCCe-EEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLME--TRGNKHTLTIKNVQSTDFG-NYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~   53 (115)
                      .|.|++++..+...........  .....+.|++. ++.+|.| .|+|++.+..
T Consensus        35 ~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~-~~~~D~g~~ltC~a~~~~   87 (109)
T d1vcaa1          35 EIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFT-PVIEDIGKVLVCRAKLHI   87 (109)
T ss_dssp             EEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEEC-CCGGGTTCEEEEEEEECS
T ss_pred             EEEEeccCceeeccccccccccCCcceeeEEEEcc-CChHHCCcEEEEEEEcCc
Confidence            5899999987643100000000  00013445554 4455655 8999998654

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0011  Score=32.35  Aligned_cols=34  Identities=29%  Similarity=0.462  Sum_probs=21.0

Q ss_pred             ceEEEECCEE-eCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEE
Q psy3272           3 MMSWYQDTFL-IEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCV   48 (115)
Q Consensus         3 ~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   48 (115)
                      .|+|.+++.. +..            .+.++++.--...|+|.|+|-
T Consensus        35 ~I~W~kd~~se~~~------------~GntltV~VkE~~~aGnYTCh   69 (87)
T d3d85d1          35 GITWTLDQSSEVLG------------SGKTLTIQVKEFGDAGQYTCH   69 (87)
T ss_dssp             SCEEEETTCCCCCE------------ESSEEEEEECSGGGCEEEEEE
T ss_pred             ccEEeeCCcccccc------------CCCEEEEEEEeccCCcceeEe
Confidence            5899998653 221            133444433344689999996

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.25  E-value=0.0045  Score=31.61  Aligned_cols=33  Identities=30%  Similarity=0.522  Sum_probs=26.4

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .+++..........|.|.+++++|+|.|.|.+.
T Consensus        59 ~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~   91 (107)
T d1c5cl1          59 PKRFSGSRSGSDYSLTISSLESEDFADYYCLQY   91 (107)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             CCceEecccCCEEEEEEhhhcccCCeEEEEecC
Confidence            445555556667899999999999999999764

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.24  E-value=0.012  Score=29.97  Aligned_cols=32  Identities=31%  Similarity=0.488  Sum_probs=24.8

Q ss_pred             CCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          19 DRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        19 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .++..........|+|.+++++|+|.|.|-..
T Consensus        60 ~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~   91 (108)
T d1jhll_          60 SRFSGSGSGTDFTLTISSLEPEDFAMYICQQH   91 (108)
T ss_dssp             TTEEEEESSSEEEEEECSCCTTCCSEEEEEEC
T ss_pred             ccccccCCCCEEEeEeeeeEeccceEEEEeeC
Confidence            33444445566789999999999999999754

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.24  E-value=0.0065  Score=31.62  Aligned_cols=34  Identities=26%  Similarity=0.335  Sum_probs=25.6

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      .+++.....  .....|.|.+++++|+|.|.|....
T Consensus        61 ~~r~~~s~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~   96 (120)
T d1hxma1          61 KDNFQGDIDIAKNLAVLKILAPSERDEGSYYCACDT   96 (120)
T ss_dssp             TTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             cccceeeccccccceecccccccccCCceeecCccc
Confidence            355554432  3468999999999999999998653

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=96.24  E-value=0.0024  Score=32.99  Aligned_cols=26  Identities=23%  Similarity=0.363  Sum_probs=22.4

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      ....|.|.++..+|+|.|.|.+....
T Consensus        63 ~~~~L~I~~l~~~Dsa~YyCA~~~~~   88 (112)
T d1sq2n_          63 KSFSLRINDLTVEDGGTYRCGLGVAG   88 (112)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEECBTT
T ss_pred             ceeeeEecCCcCccCEEEeEEEecCC
Confidence            45689999999999999999987543

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.23  E-value=0.0047  Score=31.62  Aligned_cols=35  Identities=26%  Similarity=0.373  Sum_probs=26.5

Q ss_pred             CcEEEEE--eCCeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          68 DRRLMET--RGNKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        68 ~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      .++....  .+....|.|.++..+|++.|.|...+..
T Consensus        61 ~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~~~~   97 (111)
T d1cd0a_          61 DRFAGSIDRSSNSASLTISGLKTEDEADYYCQSYDAR   97 (111)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CceeEeecCCCCccccccccCCcccCcEEEEeeccCC
Confidence            3444443  3457799999999999999999977543

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.21  E-value=0.0047  Score=31.47  Aligned_cols=33  Identities=27%  Similarity=0.426  Sum_probs=26.9

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .+++..........|.|.++.++|+|.|.|...
T Consensus        59 ~~rf~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d1d5il1          59 PSRFSGSGSGQDYSLTISSLEYEDMGIYYCLQY   91 (107)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCceeecccCCEEEccccccCCcCCEEEEeeec
Confidence            355666666677899999999999999999754

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.20  E-value=0.015  Score=29.72  Aligned_cols=32  Identities=22%  Similarity=0.370  Sum_probs=24.1

Q ss_pred             CEEEEEe--CCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          20 RRLMETR--GNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        20 ~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      |+.+...  .....|+|.+++.+|+|.|.|....
T Consensus        60 R~sis~d~~~~~~~lti~~L~~eDsa~YyCa~~~   93 (110)
T d1u9ka_          60 KFTLKHDPSEAMLQVQMTDLQVTDSGLYRCVIYH   93 (110)
T ss_dssp             TEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEEEEECCCCEEEEEECccccCCCEEEEEEEeC
Confidence            4444432  3457799999999999999999743

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=96.18  E-value=0.0063  Score=30.69  Aligned_cols=33  Identities=39%  Similarity=0.448  Sum_probs=26.9

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..++..........|.|.+++++|+|.|.|...
T Consensus        56 ~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~   88 (103)
T d8faba1          56 PQRFSSSTSGTTVTLTISGVQAEDEADYYCQAW   88 (103)
T ss_dssp             CTTEEEEEETTEEEEEETTCCGGGCEEEEEEEE
T ss_pred             CCcEEECCCCCccCceEcCcchhHCceEEeeec
Confidence            345566666778899999999999999999764

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.16  E-value=0.026  Score=28.88  Aligned_cols=60  Identities=23%  Similarity=0.333  Sum_probs=40.7

Q ss_pred             eEEEEEeecCCcceeEEEEE-----ecccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          43 GNYSCVADNNLGRAKKYMEL-----SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        43 G~y~C~~~~~~~~~~~~~~v-----~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      ..|.-++.+..+.....+-.     ......++.....+....|.|.++..+|++.|.|...+..
T Consensus        35 ~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eDsAvYYC~~~~~~   99 (112)
T d1ncwl1          35 KTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAEDLGVYYCWQGTHF   99 (112)
T ss_dssp             CBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             CcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCcCEeEEEEcCCCc
Confidence            35555666766666553332     1122345666667788899999999999999999765443

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.16  E-value=0.0044  Score=31.81  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=21.8

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      .....|.|.++..+|+|.|.|.+...
T Consensus        71 ~~~~~L~I~~~~~~Dsg~YyCa~~~~   96 (114)
T d2ak4d1          71 TSSFNFTITASQVVDSAVYFCALSGF   96 (114)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEEECS
T ss_pred             CCEEEEeecccccccCCCceEeCCCC
Confidence            34678999999999999999987543

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0068  Score=30.26  Aligned_cols=37  Identities=27%  Similarity=0.372  Sum_probs=32.4

Q ss_pred             EEEEEeccCCCCCeeeEEEeecCccc--eeeEEEEEEeC
Q psy3272          79 HTLTIKNVQSTDFGNYSCVADNNLGR--AKKYMELSELE  115 (115)
Q Consensus        79 ~~l~i~~~~~~d~G~y~C~~~n~~~~--~~~~~~l~v~~  115 (115)
                      ++|.|.++...|+|.|.-.+.+.-|.  ..+++.|.|+|
T Consensus        63 GtLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI~E  101 (101)
T d1hnfa1          63 GTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQE  101 (101)
T ss_dssp             SCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEEC
T ss_pred             CcEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEeeC
Confidence            46999999999999999999999887  66788888875

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=96.15  E-value=0.0025  Score=32.87  Aligned_cols=25  Identities=28%  Similarity=0.519  Sum_probs=21.8

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ....|.|.++..+|+|.|.|.+...
T Consensus        64 ~~~~L~I~~l~~~Dsa~YyCa~~~~   88 (113)
T d1vesa_          64 KSFSLRISDLRVEDSGTYKCQAFYS   88 (113)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEEEE
T ss_pred             CceeeeecccccCCcceEeeeeecc
Confidence            4568999999999999999998643

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.14  E-value=0.007  Score=31.04  Aligned_cols=33  Identities=27%  Similarity=0.340  Sum_probs=27.1

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .+++..........|+|.+++++|++.|.|...
T Consensus        63 ~~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa~~   95 (111)
T d2gsia1          63 PARFSGSGSGTDFTLNIHPVEEEDAATYYCSHI   95 (111)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCcEEEecCCCchhcccccccccCCceEEEEEC
Confidence            356666666677899999999999999999754

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=96.14  E-value=0.008  Score=30.45  Aligned_cols=46  Identities=11%  Similarity=0.253  Sum_probs=26.4

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCC-----eEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGN-----KHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|.|.+||..+..  ..........+     .+.|.+   ..++...|+|.+....
T Consensus        36 ~V~W~~ng~~~~~--~~~~~~~~~~dgty~~~S~L~v---~~~~~~~ytC~V~H~~   86 (103)
T d1hdma1          36 TVNWHDHSVPVEG--FGPTFVSAVDGLSFQAFSYLNF---TPEPSDIFSCIVTHEP   86 (103)
T ss_dssp             EEEEEETTEECSS--CCCEEEEEETTTEEEEEEEEEE---CCCTTCCEEEEEEETT
T ss_pred             EEEEEECCeecCC--cEeceEEeCCCCcEEEEEEEEE---ecCCCCEEEEEEEeCC
Confidence            6899999997764  22221111112     233444   3445557999998654

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=96.09  E-value=0.025  Score=28.80  Aligned_cols=34  Identities=32%  Similarity=0.420  Sum_probs=27.6

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ..++..........|.|.+++++|+|.|-|....
T Consensus        58 ~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA~~~   91 (109)
T d1w72l1          58 PERFSGSNSGNMATLTISRVEAGDEADYYCQVWD   91 (109)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             eeeEeeecCCCccceEEeeeccCCCEEEEEEecC
Confidence            4455566667788999999999999999998753

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.07  E-value=0.009  Score=30.47  Aligned_cols=25  Identities=28%  Similarity=0.331  Sum_probs=21.8

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      .....|.|.++.++|+|.|.|.+..
T Consensus        69 ~~~~~L~I~~~~~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          69 AKHLSLHIVPSQPGDSAVYFCAAME   93 (111)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEEES
T ss_pred             CCEEEEEECCCcccccEEEEeeccC
Confidence            4578999999999999999998763

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0083  Score=29.41  Aligned_cols=48  Identities=17%  Similarity=0.405  Sum_probs=30.7

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCC-CCCeEEEEEeecC
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQS-TDFGNYSCVADNN   52 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~y~C~~~~~   52 (115)
                      +.|+|.+++..+.....+.. +..  ....|.+.+-.+ +++|.|.|.+...
T Consensus        23 ~~i~W~~n~~~~~~~~~~~~-~~~--~~~~l~L~dfSe~e~sGyY~C~~~~~   71 (91)
T d1xiwa_          23 SEILWQHNDKNIGGDEDDKN-IGS--DEDHLSLKEFSELEQSGYYVCYPRGS   71 (91)
T ss_dssp             SCEEEEETTEEESSSCSCTT-EEE--ETTEEEETTCCHHHHCEEEEEEETTS
T ss_pred             CceeeeeccccccCCCcccc-ccc--ccceEEecccCccccCceEEEEcCCC
Confidence            47999999988876212110 111  234566677665 7899999998643

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.05  E-value=0.0095  Score=30.68  Aligned_cols=25  Identities=28%  Similarity=0.470  Sum_probs=21.6

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      .....|.|.++..+|+|.|.|.+..
T Consensus        68 ~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (115)
T d1ogad1          68 RKDSSLHITAAQPGDTGLYLCAGAG   92 (115)
T ss_dssp             SSEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             cceeeeeecCCCccceeeEcccccC
Confidence            4567899999999999999998753

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0052  Score=29.61  Aligned_cols=41  Identities=17%  Similarity=0.391  Sum_probs=25.5

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      .+|+|++++..+..         ......++-+-....+--|.|.|....
T Consensus        29 k~i~W~kdg~~i~~---------~~~~~ktlnLG~~~~DPRG~Y~C~~~~   69 (81)
T d1sy6a1          29 KNITWFKDGKMIGF---------LTEDKKKWNLGSNAKDPRGMYQCKGSQ   69 (81)
T ss_dssp             SEEEEEETTEEEEE---------EESSCCCEEEEEGGGCCEEEEEEESSS
T ss_pred             cEEEEecCCeEeec---------ccCCcceeecCCcccCCCcceEcCCCC
Confidence            37999999986543         112234444445544456999997643

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.00  E-value=0.0049  Score=32.15  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=20.4

Q ss_pred             CeEEEEEecCCCCCCeEEEEEee
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ....|+|.+++.+|+|.|.|.+.
T Consensus        80 ~~~~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          80 NKYVLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CEeEEEEcccccCCCEEEEeeEe
Confidence            34689999999999999999875

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.00  E-value=0.032  Score=28.57  Aligned_cols=59  Identities=15%  Similarity=0.165  Sum_probs=35.8

Q ss_pred             EEEEEeecCCcceeEE-EEEec----ccCCcEEE--EEeCCeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          44 NYSCVADNNLGRAKKY-MELSV----SVSDRRLM--ETRGNKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~-~~v~g----~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      .|..++.+..+..... +.+..    ....+...  ........|.|.++..+|+|.|.|.+....
T Consensus        29 ~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~~   94 (115)
T d1ogad1          29 SSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAGSQ   94 (115)
T ss_dssp             SCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEECTT
T ss_pred             ceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceeeEcccccCCC
Confidence            3556666666655542 22211    11122222  223456789999999999999999987543

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.98  E-value=0.007  Score=31.12  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=25.4

Q ss_pred             CCCEEEEEeC--CeEEEEEecCCCCCCeEEEEEeec
Q psy3272          18 SDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        18 ~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ..++......  ....|.|.+++++|+|.|.|.+..
T Consensus        59 ~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~   94 (114)
T d3bp5a1          59 DARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAIS   94 (114)
T ss_dssp             CTTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             cCcceEEEeCCCCEEEEEECccCcCCCeEEEEEEEe
Confidence            4555554332  346799999999999999998754

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.96  E-value=0.0036  Score=32.19  Aligned_cols=24  Identities=29%  Similarity=0.545  Sum_probs=21.5

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeec
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ....|+|.+++++|+|.|.|.+..
T Consensus        70 ~~~sL~i~~~~~~Dsg~Y~Ca~~~   93 (114)
T d2cdea1          70 KQSSLHITASQLSDSASYICVVSD   93 (114)
T ss_dssp             SEEEEEECSCCGGGCSEEEEEEEC
T ss_pred             cccccEEcccChhhCcccceeeec
Confidence            467899999999999999999865

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0063  Score=31.41  Aligned_cols=25  Identities=16%  Similarity=0.287  Sum_probs=21.4

Q ss_pred             eCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          26 RGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        26 ~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ......|+|.+++.+|+|.|.|.+.
T Consensus        73 ~~~~~~L~I~~l~~~DsavYyCa~~   97 (118)
T d1yjdc1          73 GNESVTFYLQNLYVNQTDIYFCKIE   97 (118)
T ss_dssp             CSSEEEEEEESCCGGGCEEEEEEEE
T ss_pred             CCCeEEEEECCCCcccCeEEEEEEe
Confidence            3456789999999999999999864

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=95.95  E-value=0.0044  Score=31.29  Aligned_cols=46  Identities=15%  Similarity=0.246  Sum_probs=25.2

Q ss_pred             ceEEEECCEEeCCCCCCCEE--EEEeC----CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRL--METRG----NKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~--~~~~~----~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|++||.++..  +....  .....    ..+.|.+   ..++.+.|+|.+....
T Consensus        35 ~v~W~~ng~~v~~--~~~~t~~~~~~dgtf~~~s~l~v---~~~~~~~ytC~V~H~s   86 (100)
T d1muja1          35 NITWLRNSKSVAD--GVYETSFFVNRDYSFHKLSYLTF---IPSDDDIYDCKVEHWG   86 (100)
T ss_dssp             EEEEEESSSBCCS--SEEECCCEECTTSCEEEEEEEEE---CCCTTCCEEEEEECTT
T ss_pred             EEEEEeCCeeccC--CceeeeeEECCCCCEEEEEEeEE---cCCCCCEEEEEEEECC
Confidence            6899999987753  11100  00111    1233333   3455668999998643

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0025  Score=30.17  Aligned_cols=38  Identities=18%  Similarity=0.281  Sum_probs=20.8

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      +|+|++++..+..  .         ...++-+-....+--|.|.|....
T Consensus        19 si~W~k~~~~~~~--~---------~~k~lnLG~~~~DPRG~Y~C~~~e   56 (74)
T d1xiwb_          19 SITWVEGTVGTLL--S---------DITRLDLGKRILDPRGIYRCNGTD   56 (74)
T ss_dssp             CEEEEEECCCEEE--G---------GGTEEEEEEGGGCCEEEEEEC---
T ss_pred             eeEEecCCccccc--C---------CccEeecCCcccCCCcceEeCCcc
Confidence            6899998753332  1         123344444444446999998653

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=95.90  E-value=0.008  Score=30.88  Aligned_cols=33  Identities=33%  Similarity=0.517  Sum_probs=26.5

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .+++..........|.|.++.++|+|.|-|...
T Consensus        64 ~~~fs~~~~~~~~~L~I~~~~~eDsAvYYC~~~   96 (112)
T d1ncwl1          64 PDRFTGSGSGTDFTLKISRVEAEDLGVYYCWQG   96 (112)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CceEEeeCCCCEEEEEECccccCcCEeEEEEcC
Confidence            455665566677899999999999999999653

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.81  E-value=0.014  Score=29.70  Aligned_cols=27  Identities=11%  Similarity=0.348  Sum_probs=22.8

Q ss_pred             EeCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          25 TRGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        25 ~~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      .......|+|.++.++|+|.|.|....
T Consensus        69 ~~~~~~~L~I~~~~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          69 PSQEQFSLILESATPSQTSVYFCASGG   95 (110)
T ss_dssp             EETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             ccCCEEEEEECCCCHhhCEEEEEeeCC
Confidence            445678899999999999999998753

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.80  E-value=0.0012  Score=33.13  Aligned_cols=28  Identities=25%  Similarity=0.501  Sum_probs=23.5

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCccc
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNLGR  104 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~~~  104 (115)
                      ....|.|.++..+|+|.|.|.+....+.
T Consensus        62 ~~~~L~I~~~~~~Dsa~YyCA~~~~~g~   89 (96)
T d1ymmd1          62 KSSSLLITASRAADTASYFCATDTTSGT   89 (96)
T ss_dssp             TBCCBCCSSCCSTTCSCCEEEEEETTSC
T ss_pred             eecccCcCCCCcccCEEEeEeEecCCCC
Confidence            3457999999999999999998776554

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.041  Score=28.16  Aligned_cols=27  Identities=15%  Similarity=0.212  Sum_probs=22.8

Q ss_pred             eCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          75 RGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        75 ~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ......|.|.++..+|+|.|.|.+...
T Consensus        73 ~~~~~~L~I~~l~~~DsavYyCa~~~~   99 (118)
T d1yjdc1          73 GNESVTFYLQNLYVNQTDIYFCKIEVM   99 (118)
T ss_dssp             CSSEEEEEEESCCGGGCEEEEEEEEEE
T ss_pred             CCCeEEEEECCCCcccCeEEEEEEecc
Confidence            445668999999999999999987654

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0082  Score=30.21  Aligned_cols=51  Identities=14%  Similarity=0.234  Sum_probs=28.1

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeC----CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRG----NKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|++||..+..............    ..+.|.|..-.......|+|.+....
T Consensus        38 ~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1q0xl2          38 TVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEG   92 (102)
T ss_dssp             EEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETT
T ss_pred             EEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            6999999987753100000000011    13456665544445568999998654

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=95.76  E-value=0.0064  Score=30.69  Aligned_cols=45  Identities=16%  Similarity=0.283  Sum_probs=24.9

Q ss_pred             ceEEEECCEEeCCCCCCCE--EEEEeC----CeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           3 MMSWYQDTFLIEPSVSDRR--LMETRG----NKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~--~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      .|+|++||.++..  +...  ......    ..+.|.+.   ..+...|+|.+...
T Consensus        37 ~v~W~~ng~~~~~--~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~   87 (101)
T d1fnga1          37 NVTWLRNGRPVTE--GVSETVFLPRDDHLFRKFHYLTFL---PSTDDFYDCEVDHW   87 (101)
T ss_dssp             EEEEEETTEEECS--SEEECCCEECSSSCEEEEEEEEEC---CCTTCCEEEEEECT
T ss_pred             EEEEEECCeecCC--CcEeCeEEECCCCcEEEEEEeEEc---CCCCCEEEEEEEEC
Confidence            7899999998754  1110  011111    12344443   33445799999764

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.74  E-value=0.042  Score=27.89  Aligned_cols=58  Identities=14%  Similarity=0.126  Sum_probs=34.6

Q ss_pred             EEEEEeecCCcceeEEEE-E--ecccCC--cEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          44 NYSCVADNNLGRAKKYME-L--SVSVSD--RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~~~-v--~g~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .|..++.+..+.....|- .  ...+..  +.....+.....|.|.++..+|+|.|.|.+...
T Consensus        29 ~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~~   91 (112)
T d1kgcd1          29 DYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYYCILPLA   91 (112)
T ss_dssp             CCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEEEEECCCC
T ss_pred             ccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeEeeeEecC
Confidence            456666666555544221 1  111111  223333445678999999999999999987543

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.73  E-value=0.0081  Score=30.64  Aligned_cols=58  Identities=16%  Similarity=0.115  Sum_probs=36.0

Q ss_pred             EEEEEeecCCcceeEEE-EEec----ccCCcEEEEE--eCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          44 NYSCVADNNLGRAKKYM-ELSV----SVSDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~~-~v~g----~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .|..++.+..+.....+ ....    ....++....  .+....|.|.++..+|+|.|.|.+...
T Consensus        30 ~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~~   94 (110)
T d1ac6a_          30 PALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYYCALSGG   94 (110)
T ss_dssp             CEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEEEEEEEEET
T ss_pred             cceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCcccceeecCC
Confidence            46777777766655422 2210    1122333222  234568999999999999999988653

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.71  E-value=0.011  Score=30.07  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=19.7

Q ss_pred             eEEEEEecCCCCCCeEEEEEee
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ...|+|.++..+|+|.|.|...
T Consensus        72 ~~~L~i~~~~~~Dsa~YyCa~~   93 (111)
T d2esve1          72 YSTLKVQPAELEDSGVYFCASS   93 (111)
T ss_dssp             SEEEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEEECCcccCCCceEEEeee
Confidence            4689999999999999999864

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.70  E-value=0.01  Score=30.38  Aligned_cols=24  Identities=38%  Similarity=0.613  Sum_probs=20.8

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeec
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ....|.|.++.++|+|.|.|.+..
T Consensus        69 ~~~~L~I~~~~~~Dsa~YyCa~~~   92 (113)
T d1h5ba_          69 RYSTLHIRDAQLEDSGTYFCAAEA   92 (113)
T ss_dssp             SEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ceeEEEECCCCHhHCEEEEEEecC
Confidence            456799999999999999998754

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=95.69  E-value=0.02  Score=28.62  Aligned_cols=48  Identities=15%  Similarity=0.225  Sum_probs=25.6

Q ss_pred             ceEEEECCEEeCCCC-CCCEEEEEeC---CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSV-SDRRLMETRG---NKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~-~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|.+||..+.... ......+...   ..+.|.+   ..++...|+|.+....
T Consensus        35 ~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v---~~~~~~~ytC~V~H~s   86 (98)
T d1hdmb1          35 TITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLAL---TPSYGDTYTCVVEHIG   86 (98)
T ss_dssp             EEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEE---CCCTTCCEEEEEECTT
T ss_pred             EEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEc---CCCCCCEEEEEEEeCC
Confidence            689999999875310 1111111000   1233444   3444558999998643

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0047  Score=30.69  Aligned_cols=49  Identities=22%  Similarity=0.350  Sum_probs=25.5

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCe--EEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNK--HTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|.+||..+..  ...........+  .....-.+...+...|+|.+....
T Consensus        33 ~v~W~~ng~~~~~--~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~s   83 (94)
T d1t7va1          33 DVHWTRAGEVQEP--ELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSS   83 (94)
T ss_dssp             EEEEEETTEECCC--SEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETT
T ss_pred             EEEEEECCEECCC--cEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECC
Confidence            6899999987754  221111111111  111122233445568999998643

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0077  Score=30.46  Aligned_cols=49  Identities=14%  Similarity=0.287  Sum_probs=28.2

Q ss_pred             ceEEEECCEEeCCCCCCCEEEE-EeC----CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLME-TRG----NKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~-~~~----~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|+++|..+..  ....... ...    ..+.|.|..-.......|+|.+....
T Consensus        39 ~v~W~~~g~~~~~--~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (104)
T d1o0va1          39 QITWLEDGQVMDV--DLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQG   92 (104)
T ss_dssp             EEEEEETTEECCG--GGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETT
T ss_pred             EEEEEECCEEccC--CceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECC
Confidence            6899999998764  2111111 111    12455555443333557999998754

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=95.58  E-value=0.0072  Score=30.38  Aligned_cols=46  Identities=15%  Similarity=0.247  Sum_probs=24.8

Q ss_pred             ceEEEECCEEeCCCC-CCCEEEEEeC----CeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           3 MMSWYQDTFLIEPSV-SDRRLMETRG----NKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~-~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      .|+|.+||.++.... ..... ....    ..+.|.+.   .++...|+|.+...
T Consensus        37 ~v~W~~ng~~~~~~~~~~~~~-~~~dgtf~~~s~l~v~---~~~~~~ytC~V~H~   87 (99)
T d1uvqa1          37 NITWLSNGQSVTEGVSETSFL-SKSDHSFFKISYLTFL---PSADEIYDCKVEHW   87 (99)
T ss_dssp             EEEEEETTEEECTTEEECCCE-ECTTSCEEEEEEEEEC---CCTTCCEEEEEECT
T ss_pred             EEEEEECCEeccCCcEecceE-ECCCCCEEEEEEEEEc---CCCCCEEEEEEEeC
Confidence            689999999875410 00000 1111    12334443   34455799999864

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=95.52  E-value=0.022  Score=28.33  Aligned_cols=51  Identities=12%  Similarity=0.210  Sum_probs=25.3

Q ss_pred             ceEEEECCEEeCCC-CCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPS-VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|.+||+++... ............-.....-.+...+...|+|.+....
T Consensus        34 ~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s   85 (97)
T d1uvqb1          34 KVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPS   85 (97)
T ss_dssp             EEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECTT
T ss_pred             EEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeCC
Confidence            68999999876531 0000000000111111112334555678999998643

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=95.51  E-value=0.014  Score=29.14  Aligned_cols=24  Identities=21%  Similarity=0.427  Sum_probs=20.7

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecC
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ...+.|.+++..|+|+|+|.....
T Consensus        56 ~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1          56 KANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             EEEEEEcccCcccCeEEEEEEEcC
Confidence            457999999999999999987644

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.48  E-value=0.0099  Score=28.87  Aligned_cols=40  Identities=25%  Similarity=0.537  Sum_probs=24.8

Q ss_pred             cceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272           2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus         2 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .+|+|++++..+..  ..       ....+|-+-....+--|.|.|...
T Consensus        34 k~i~W~kdg~~i~~--~~-------~~~ktlnLG~~~~DPRGiY~C~g~   73 (86)
T d1jbja1          34 KTIKWLKDGSIISP--LN-------ATKNTWNLGNNAKDPRGTYQCQGA   73 (86)
T ss_dssp             SCEEEEETTEECCC--SS-------CCSSCCEEEETTSCCEEEEEEEES
T ss_pred             cEEEEecCCceecc--cc-------cccceeecCCcccCCCcceEcCCC
Confidence            36999999988764  11       112334444444444699999764

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.45  E-value=0.016  Score=28.49  Aligned_cols=45  Identities=13%  Similarity=0.253  Sum_probs=25.7

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCC-----eEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGN-----KHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|.+||..+..  .. .......+     .+.|.+.   .++...|+|++....
T Consensus        33 ~v~W~~ng~~~~~--~~-~~~~~~~dgty~~~S~l~v~---~~~~~~ytC~V~H~s   82 (91)
T d3frua1          33 KFRFLRNGLASGS--GN-CSTGPNGDGSFHAWSLLEVK---RGDEHHYQCQVEHEG   82 (91)
T ss_dssp             EEEEEETTEECCC--CE-EEEEECSSSCEEEEEEEEEE---TTCGGGEEEEEECTT
T ss_pred             EEEEEECCEeCCc--cC-ccceecCCCCEeEEEEEEEC---CCCCCEEEEEEEeCC
Confidence            6899999987654  21 11111111     2344443   345568999998643

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.45  E-value=0.0092  Score=30.56  Aligned_cols=24  Identities=25%  Similarity=0.306  Sum_probs=21.1

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeec
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ....|.|.+++++|+|.|.|.+..
T Consensus        71 ~~~~L~I~~~~~~Dsa~YyCa~~~   94 (115)
T d1fo0a_          71 SSIGLIITATQIEDSAVYFCAMRG   94 (115)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CEEEEEECCCCccccccccceeec
Confidence            457899999999999999999764

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.41  E-value=0.0054  Score=31.53  Aligned_cols=22  Identities=32%  Similarity=0.451  Sum_probs=19.8

Q ss_pred             eEEEEEecCCCCCCeEEEEEee
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ...|+|.+++.+|+|.|.|...
T Consensus        78 ~~~L~I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          78 RPFLSIMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             SCEEEECSCCGGGCEEEEEEEE
T ss_pred             eEEEeecccCCCCCcEEEEeEc
Confidence            4679999999999999999875

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.38  E-value=0.0051  Score=31.71  Aligned_cols=24  Identities=21%  Similarity=0.195  Sum_probs=20.5

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeec
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ....|.|.+++++|+|.|.|.+..
T Consensus        71 ~~~~L~I~~~~~~Dsg~YyCa~~~   94 (115)
T d1lp9e1          71 SSFHLQKSSAQLSDSALYYCALFL   94 (115)
T ss_dssp             TBCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CeEEeeccccccccCccceEEEEc
Confidence            346699999999999999998754

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.055  Score=26.80  Aligned_cols=50  Identities=16%  Similarity=0.108  Sum_probs=31.6

Q ss_pred             ecccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecCcc-----ceeeEEEEEE
Q psy3272          63 SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG-----RAKKYMELSE  113 (115)
Q Consensus        63 ~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~~-----~~~~~~~l~v  113 (115)
                      +|...+..... ......+.|.+++..|+|+|+|.......     ..+-.+.|.|
T Consensus        41 ~g~~~~~~~~~-~~~~a~F~l~~v~~~~~G~Y~C~y~~~~~p~~~S~~Sd~leL~V   95 (96)
T d1ucta2          41 EGELSLPQHQS-GEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVV   95 (96)
T ss_dssp             TTCSSCCSEEE-CSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEE
T ss_pred             CCcccceEEcC-CCcccEEEEeccccccCcEEEEEEEcCCCCCCccCCCCCEEEEE
Confidence            45443333322 23457899999999999999998765432     1333555555

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.013  Score=29.20  Aligned_cols=36  Identities=22%  Similarity=0.407  Sum_probs=25.3

Q ss_pred             eEEEEEeccCCCCCeeeEEEeecCc-c--ceeeEEEEEE
Q psy3272          78 KHTLTIKNVQSTDFGNYSCVADNNL-G--RAKKYMELSE  113 (115)
Q Consensus        78 ~~~l~i~~~~~~d~G~y~C~~~n~~-~--~~~~~~~l~v  113 (115)
                      ...+.|.++..+|+|.|+|...... .  ..+-.+.|.|
T Consensus        56 ~a~F~i~~v~~~~~G~Y~C~y~~~~~~~S~~Sd~leL~V   94 (96)
T d1ugna1          56 KGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVV   94 (96)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEE
T ss_pred             EEEEEEEecCHHHCCeEEEEEeCCCCCccccCCCEEEEE
Confidence            3579999999999999999976432 2  1223555655

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.30  E-value=0.0071  Score=30.71  Aligned_cols=24  Identities=33%  Similarity=0.497  Sum_probs=20.9

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .....|.|.++.++|+|.|.|.+.
T Consensus        68 ~~~~~L~I~~~~~~Dsa~YyCa~~   91 (110)
T d1u3ha1          68 EKKLSLHIADSQPGDSATYFCAAS   91 (110)
T ss_dssp             GGEEEEEESSCCTTSCSEEEECCE
T ss_pred             CCeeEeEeccCCCCCceeEeeeec
Confidence            345789999999999999999875

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.022  Score=28.13  Aligned_cols=40  Identities=15%  Similarity=0.227  Sum_probs=27.1

Q ss_pred             eCCeEEEEEeccCCCCCeeeEEEeec-Ccc--ceeeEEEEEEe
Q psy3272          75 RGNKHTLTIKNVQSTDFGNYSCVADN-NLG--RAKKYMELSEL  114 (115)
Q Consensus        75 ~~~~~~l~i~~~~~~d~G~y~C~~~n-~~~--~~~~~~~l~v~  114 (115)
                      ......+.|.+++..|+|+|+|.... ...  ..+-.+.|.|.
T Consensus        50 ~~~~a~F~i~~v~~~~~G~Y~C~~~~~~~~wS~~SdpLeL~Vt   92 (93)
T d1olla2          50 GKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT   92 (93)
T ss_dssp             CSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             CCceeEEEecccChhcCceEEEEeECCCCCcCCCCCCEEEEee
Confidence            34667899999999999999997532 221  12335566553

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.01  Score=30.63  Aligned_cols=24  Identities=38%  Similarity=0.713  Sum_probs=21.2

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .....|.|.+++.+|+|.|.|.+.
T Consensus        72 ~~~~~L~I~~l~~~Dsa~YyCa~~   95 (118)
T d1i8lc_          72 GNQVNLTIQGLRAMDTGLYICKVE   95 (118)
T ss_dssp             SSEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEEEEeeccccCCCEEEEEeEe
Confidence            456789999999999999999875

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.02  Score=28.55  Aligned_cols=26  Identities=15%  Similarity=0.244  Sum_probs=21.7

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      ....+.|.++...|+|+|+|......
T Consensus        58 ~~a~F~l~~v~~~~~G~Y~C~y~~~~   83 (98)
T d1ugna2          58 SRAIFSVGPVSPSRRWWYRCYAYDSN   83 (98)
T ss_dssp             CEEEEEECCCCTTSCEEEEEEEECTT
T ss_pred             eEEEEEeeecccCCCeEEEEeeEcCC
Confidence            45679999999999999999876443

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.16  E-value=0.014  Score=29.66  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=20.6

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeec
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ....|.|.++.++|+|.|.|....
T Consensus        70 ~~~~L~i~~~~~~Dsa~YyCA~~~   93 (110)
T d1ac6a_          70 TSFHLQKASVQESDSAVYYCALSG   93 (110)
T ss_dssp             TBCCEEEEEECGGGCEEEEEEEEE
T ss_pred             CEEeeeecCcCcCCCcccceeecC
Confidence            356799999999999999998754

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=95.12  E-value=0.08  Score=27.24  Aligned_cols=33  Identities=24%  Similarity=0.266  Sum_probs=25.5

Q ss_pred             cEEEEEe--CCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          69 RRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        69 ~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ++....+  .+...|.|.++..+|+|.|.|.....
T Consensus        63 r~~~s~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~~   97 (120)
T d1hxma1          63 NFQGDIDIAKNLAVLKILAPSERDEGSYYCACDTL   97 (120)
T ss_dssp             TEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECC
T ss_pred             cceeeccccccceecccccccccCCceeecCcccC
Confidence            4544443  35679999999999999999987653

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.06  E-value=0.0091  Score=30.51  Aligned_cols=23  Identities=30%  Similarity=0.483  Sum_probs=20.4

Q ss_pred             CeEEEEEecCCCCCCeEEEEEee
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ....|+|.+++++|+|.|.|.+.
T Consensus        71 ~~~~L~I~~~~~~Dsa~YyCa~~   93 (112)
T d1kgce1          71 SVSTLKIQRTQQEDSAVYLCASS   93 (112)
T ss_dssp             SCEEEEESSCCGGGCEEEEEEEE
T ss_pred             CEEEEEECCCCcCCCEEEEEeee
Confidence            35789999999999999999875

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.027  Score=28.04  Aligned_cols=32  Identities=22%  Similarity=0.244  Sum_probs=27.0

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEeecCCcceeE
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK   58 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   58 (115)
                      ....+|.|..+...|+|.|.-.+.+..|....
T Consensus        60 ~~nGtLkIK~L~~~d~GtYkv~vYd~~Gk~vl   91 (101)
T d1hnfa1          60 FKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVL   91 (101)
T ss_dssp             CTTSCEEECSCCGGGCEEEEEEEEETTSCEEE
T ss_pred             ccCCcEEeeeeeecCCCcEEEEEEcCCCcEee
Confidence            35678999999999999999999887766654

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=94.95  E-value=0.028  Score=29.24  Aligned_cols=33  Identities=30%  Similarity=0.413  Sum_probs=25.2

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..++.+...  .....|.|.++.++|+|.|.|-..
T Consensus        66 ~~rf~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~  100 (123)
T d1hxmb1          66 SGKFEVDRIPETSTSTLTIHNVEKQDIATYYCALW  100 (123)
T ss_dssp             TTSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceeEEeeeccccceeecccccccccCcEEEEeee
Confidence            345665543  345789999999999999999864

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.94  E-value=0.031  Score=28.46  Aligned_cols=24  Identities=21%  Similarity=0.408  Sum_probs=20.4

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeec
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ....|.|.++.++|+|.|.|....
T Consensus        70 ~~~~L~I~~~~~~DSa~YyCa~~~   93 (114)
T d1ogae1          70 ESFPLTVTSAQKNPTAFYLCASSS   93 (114)
T ss_dssp             TBCCEEECSCCSCCCEEEEEEEES
T ss_pred             CeEEEEECcCCcCCceeEEEeecc
Confidence            346799999999999999997653

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=94.93  E-value=0.087  Score=26.69  Aligned_cols=25  Identities=28%  Similarity=0.418  Sum_probs=21.6

Q ss_pred             CeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          77 NKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        77 ~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ....|.|.++..+|+|.|.|.+...
T Consensus        77 ~~~~L~I~~~~~~Dsg~Y~Ca~~~~  101 (115)
T d2atpb1          77 RRPFLSIMNVKPEDSDFYFCATVGS  101 (115)
T ss_dssp             SSCEEEECSCCGGGCEEEEEEEECS
T ss_pred             CeEEEeecccCCCCCcEEEEeEcCC
Confidence            3568999999999999999998644

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.84  E-value=0.0094  Score=30.61  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=20.3

Q ss_pred             eEEEEEecCCCCCCeEEEEEeec
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ...|+|.++.++|+|.|.|.+..
T Consensus        72 ~~~L~I~~~~~~Dsa~YyCa~~~   94 (115)
T d1j8hd1          72 SFHLTKPSAHMSDAAEYFCAVSE   94 (115)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEES
T ss_pred             EEEEeeccccccCCccceeeecC
Confidence            45799999999999999999864

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.78  E-value=0.011  Score=30.18  Aligned_cols=33  Identities=27%  Similarity=0.402  Sum_probs=25.1

Q ss_pred             CCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .+++....  ......|.|.+++++|+|.|.|...
T Consensus        60 ~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~   94 (111)
T d1cd0a_          60 PDRFAGSIDRSSNSASLTISGLKTEDEADYYCQSY   94 (111)
T ss_dssp             CTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCceeEeecCCCCccccccccCCcccCcEEEEeec
Confidence            34454433  3457899999999999999999864

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=94.77  E-value=0.051  Score=27.03  Aligned_cols=62  Identities=15%  Similarity=0.157  Sum_probs=34.0

Q ss_pred             CCCCeEEEEEeecCCcceeEEEEEecccCCcEEE--EEeCCeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          39 STDFGNYSCVADNNLGRAKKYMELSVSVSDRRLM--ETRGNKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        39 ~~d~G~y~C~~~~~~~~~~~~~~v~g~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      ..+.=...|......  ....|.=+|...+....  ...+......|..+...|+|+|+|......
T Consensus        19 ~G~~VTL~C~~~~~~--~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~~   82 (99)
T d1nkra2          19 AGENVTLSCSSRSSY--DMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFHD   82 (99)
T ss_dssp             TTCEEEEEEEESSCC--SEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEETT
T ss_pred             CCCeEEEEECCCCCc--cEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecCC
Confidence            333445667644321  12222224544443322  233455667888888899999999765443

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=94.76  E-value=0.0078  Score=30.04  Aligned_cols=47  Identities=13%  Similarity=0.194  Sum_probs=24.8

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeC---CeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRG---NKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      .|+|++++..+..............   ..+.|.+..   ++...|+|.+...
T Consensus        34 ~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~   83 (96)
T d2h26a1          34 WVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVAD---GEAAGLSCRVKHS   83 (96)
T ss_dssp             EEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEG---GGCTTEEEEEEEG
T ss_pred             EEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeC---ccCCEEEEEEEeC
Confidence            7899999987654211111111000   124455543   3445799999753

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=94.63  E-value=0.019  Score=28.60  Aligned_cols=24  Identities=21%  Similarity=0.427  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecC
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      ...+.|.+++..|.|.|.|.+...
T Consensus        56 ~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1          56 KANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             EEEEEEcccCcccCeEEEEEEEcC
Confidence            467899999999999999998643

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.63  E-value=0.011  Score=30.13  Aligned_cols=25  Identities=20%  Similarity=0.313  Sum_probs=21.1

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      .....|.|.++.++|+|.|.|.+..
T Consensus        66 ~~~~~L~i~~~~~~Dsa~YyCa~~~   90 (112)
T d1kgcd1          66 RKSSTLILHRATLRDAAVYYCILPL   90 (112)
T ss_dssp             SSEEEEEESSCCGGGCEEEEEECCC
T ss_pred             CCeeEEEEeecccccceeEeeeEec
Confidence            3457899999999999999998753

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.0083  Score=29.92  Aligned_cols=23  Identities=22%  Similarity=0.433  Sum_probs=20.0

Q ss_pred             eEEEEEecCCCCCCeEEEEEeec
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ...+.|.+++.+|+|.|.|.+..
T Consensus        56 ~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1          56 KGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEEEEecCHHHCCeEEEEEeC
Confidence            46789999999999999999853

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=94.49  E-value=0.028  Score=29.09  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=20.3

Q ss_pred             CeEEEEEecCCCCCCeEEEEEee
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ....|+|.++.++|+|.|.|...
T Consensus        77 ~~~~L~I~~l~~~Dsa~YyCA~~   99 (120)
T d1ypzf1          77 STSILTIYSLEEEDEAIYYCSYG   99 (120)
T ss_dssp             TEEEEEECSCCGGGCSEEEEEEC
T ss_pred             ccccccccccccccceeEEEEEc
Confidence            45789999999999999999864

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.46  E-value=0.024  Score=28.88  Aligned_cols=24  Identities=13%  Similarity=0.361  Sum_probs=20.9

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeec
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ....|+|.++.++|+|.|.|.+..
T Consensus        70 ~~~~L~I~~~~~~Dsa~YyCA~~~   93 (113)
T d2ntsp1          70 SRSEMNVSTLELGDSALYLCASSL   93 (113)
T ss_dssp             SCEEEEECSCCGGGCEEEEEEEES
T ss_pred             CeeEEEECCCCcccceeeeeeeeC
Confidence            357899999999999999998753

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.46  E-value=0.022  Score=27.84  Aligned_cols=45  Identities=7%  Similarity=0.108  Sum_probs=24.3

Q ss_pred             ceEEEECCEEeCCCCCCCEE--EEEeC----CeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRL--METRG----NKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~--~~~~~----~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      .|+|.++|+.+..  +....  .....    ..+.|.+..   .+...|+|.+...
T Consensus        33 ~v~W~~~g~~~~~--~~~~~~~~~~~~gt~~~~s~l~v~~---~~~~~ytC~V~H~   83 (89)
T d2mhaa1          33 TLTWQLNGEELIQ--DMELVETRPAGDGTFQKWASVVVPL---GKEQYYTCHVYHQ   83 (89)
T ss_dssp             EEEEEETTEEECT--TCEECCCEECSSSCEEEEEEEEEES---STTTTCEEEEECS
T ss_pred             EEEEEECCEEeCC--CEEECcEecCCCCcEEEEEEEEecC---cCCCEEEEEEEEC
Confidence            6899999998754  21110  01111    124454433   3334799999754

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.0092  Score=30.01  Aligned_cols=49  Identities=16%  Similarity=0.280  Sum_probs=26.0

Q ss_pred             ceEEEECCEEeCCCCCCCEE-EEEeCC-----eEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRL-METRGN-----KHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~-~~~~~~-----~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|.+||..+..  ..... .....+     .+.|.|..........|+|.+....
T Consensus        38 ~v~W~~~g~~~~~--~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1rzfl2          38 TVAWKADSSPVKA--GVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG   92 (102)
T ss_dssp             EEEEEETTEECCS--SEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETT
T ss_pred             EEEEEECCEECCC--CEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            6899999987754  11100 001111     2445554333222447999998754

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.38  E-value=0.0047  Score=30.84  Aligned_cols=24  Identities=25%  Similarity=0.513  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCCCCeEEEEEeecC
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      ...|.|.+++++|+|.|.|.+...
T Consensus        63 ~~~L~I~~~~~~Dsa~YyCA~~~~   86 (96)
T d1ymmd1          63 SSSLLITASRAADTASYFCATDTT   86 (96)
T ss_dssp             BCCBCCSSCCSTTCSCCEEEEEET
T ss_pred             ecccCcCCCCcccCEEEeEeEecC
Confidence            467999999999999999987543

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.24  E-value=0.061  Score=27.96  Aligned_cols=45  Identities=13%  Similarity=0.237  Sum_probs=27.4

Q ss_pred             ceEEEECCEEeCCCC--------------CCCEEEEEeCCeEEEEEecCCCCCCe-EEEEEeecC
Q psy3272           3 MMSWYQDTFLIEPSV--------------SDRRLMETRGNKHTLTIKNVQSTDFG-NYSCVADNN   52 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~   52 (115)
                      .|+|++||+.+....              ...+.     ..+.|.|....-.+.| .|+|.+...
T Consensus        38 ~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys-----~sS~L~v~~~~W~~~g~~ytC~V~H~   97 (127)
T d1ogae2          38 ELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYS-----LSSRLRVSATFWQNPRNHFRCQVQFY   97 (127)
T ss_dssp             EEEEEETTEEECSSEEECSSCEESCTTSTTCCEE-----EEEEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred             EEEEEECCEEccCcEEecceeeeecccCCCCeEE-----EEEEEEECHHHhCCCCCEEEEEEEEC
Confidence            689999998775310              00111     1356666555445555 699999753

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.22  E-value=0.13  Score=25.71  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=16.7

Q ss_pred             EEEEeccCCCCCe-eeEEEeecCccc
Q psy3272          80 TLTIKNVQSTDFG-NYSCVADNNLGR  104 (115)
Q Consensus        80 ~l~i~~~~~~d~G-~y~C~~~n~~~~  104 (115)
                      .|.+. .+.+|.| .|+|.|.+..+.
T Consensus        65 ~l~~~-~~~~D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          65 EVTFT-PVIEDIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             EEEEC-CCGGGTTCEEEEEEEECSCC
T ss_pred             EEEcc-CChHHCCcEEEEEEEcCcCC
Confidence            35554 4555666 899999988654

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=94.13  E-value=0.16  Score=26.16  Aligned_cols=36  Identities=22%  Similarity=0.319  Sum_probs=27.2

Q ss_pred             CCcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          67 SDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        67 ~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      ..++.+..+.  +...|.|.++..+|++.|.|......
T Consensus        64 kgR~tis~D~s~~~~~L~i~~L~~eDtAvYyCAr~~~~  101 (116)
T d7fabh1          64 RGRVTMLVNTSKNQFSLRLSSVTAADTAVYYCARNLIA  101 (116)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             eecceeecccchhhhhccccccccccceEEEeeeecCC
Confidence            3456666543  46789999999999999999865443

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=94.01  E-value=0.16  Score=26.03  Aligned_cols=58  Identities=10%  Similarity=0.077  Sum_probs=36.4

Q ss_pred             EEEEEeecCCcceeEEE-EEe--------cccCCcEEEEEe--CCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          44 NYSCVADNNLGRAKKYM-ELS--------VSVSDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~~-~v~--------g~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .|.-++.+..+.....| .+.        .....++....+  .....|.|.++..+|+|.|.|.....
T Consensus        33 ~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~  101 (120)
T d1ypzf1          33 VTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYGEG  101 (120)
T ss_dssp             CCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGGCSEEEEEECCT
T ss_pred             CcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccccccceeEEEEEcCC
Confidence            45566666666655422 221        112224444443  34678999999999999999987643

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=93.98  E-value=0.055  Score=26.25  Aligned_cols=47  Identities=9%  Similarity=0.072  Sum_probs=24.1

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|.++|..+..  ......  ...+....+.-+.......|+|.+....
T Consensus        31 ~v~W~~~g~~~~~--~~~~~~--~~~gtys~~s~~~~~~~~~yTC~V~H~~   77 (86)
T d1hxma2          31 RINLVSSKKITEF--DPAIVI--SPSGKYNAVKLGKYEDSNSVTCSVQHDN   77 (86)
T ss_dssp             EEEEECSSEEEEC--CCEEEE--CTTSSEEEEEEEEETTTTTCEEEEEETT
T ss_pred             EEEEEECCEEccC--cEEeee--ccCCcEEEEEEEecCCCCEEEEEEEECC
Confidence            6899999987654  221111  1112112222222233447999998643

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.96  E-value=0.096  Score=27.01  Aligned_cols=36  Identities=17%  Similarity=0.244  Sum_probs=28.1

Q ss_pred             CCcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          67 SDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        67 ~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      ..++.+..+.  +...|.|.++..+|++.|.|......
T Consensus        65 ~gR~tiS~D~s~~t~~L~i~~L~~eDtAvYYCA~~~~~  102 (117)
T d1iqdb1          65 QGSVTMTADTSTNIAYMELSSLRSDDTAVYYCAVPDPD  102 (117)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSS
T ss_pred             eeeeeeecccccceEEEeecccCcCcceEEEEeEcCCC
Confidence            4466666653  45679999999999999999977654

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.73  E-value=0.033  Score=27.51  Aligned_cols=45  Identities=11%  Similarity=0.240  Sum_probs=24.2

Q ss_pred             ceEEEECCEEeCCCCCCCEE--EEEeC----CeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRL--METRG----NKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~--~~~~~----~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      .|+|.++|..+..  .....  .....    ..+.|.+   ...+...|+|.+...
T Consensus        33 ~vtW~~~g~~~~~--~~~~~~~~~~~~~~~~~~s~l~v---~~~~~~~ytC~V~H~   83 (95)
T d1k5na1          33 TLTWQRDGEDQTQ--DTELVETRPAGDRTFQKWAAVVV---PSGEEQRYTCHVQHE   83 (95)
T ss_dssp             EEEEEETTEECGG--GCEECCCEECSSSCEEEEEEEEE---ETTCGGGEEEEEECT
T ss_pred             EEEEEECCEEcCC--CceeccEEcCCCCeEEEEEEEEE---EcCCCCEEEEEEEEC
Confidence            6899999987754  21110  11111    1233333   234445899999864

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.66  E-value=0.032  Score=28.37  Aligned_cols=22  Identities=14%  Similarity=0.347  Sum_probs=19.6

Q ss_pred             eEEEEEecCCCCCCeEEEEEee
Q psy3272          29 KHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        29 ~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ...|.|.++.++|+|.|.|...
T Consensus        71 ~~~L~I~~~~~~DsavYyCA~~   92 (112)
T d2bnub1          71 DFPLRLLSAAPSQTSVYFCASS   92 (112)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEEECCCCHHHCEEEEEeec
Confidence            4579999999999999999865

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.66  E-value=0.007  Score=30.61  Aligned_cols=51  Identities=14%  Similarity=0.206  Sum_probs=26.2

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeC---CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRG---NKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|.+||..+..............   ..+.|.|......+...|+|.+....
T Consensus        38 ~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~   91 (104)
T d1nfde2          38 TVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEG   91 (104)
T ss_dssp             EEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTT
T ss_pred             EEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECC
Confidence            6899999998764211000000000   12334443333334457999998654

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.60  E-value=0.027  Score=28.71  Aligned_cols=24  Identities=13%  Similarity=0.450  Sum_probs=20.7

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeec
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ....|+|.++.++|+|.|.|.+..
T Consensus        71 ~~~~L~i~~~~~~Dsa~YyCa~~~   94 (113)
T d1j8he1          71 ERFSLILESASTNQTSMYLCASSS   94 (113)
T ss_dssp             TBCEEEESSCCGGGCEEEEEEEEC
T ss_pred             cEeeeEeccCccCCcccEEeeEcc
Confidence            346799999999999999998753

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=93.54  E-value=0.044  Score=27.91  Aligned_cols=23  Identities=13%  Similarity=0.352  Sum_probs=20.0

Q ss_pred             CeEEEEEecCCCCCCeEEEEEee
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ....|+|.+++++|+|.|.|...
T Consensus        72 ~~~~L~I~~~~~~Dsa~YyCa~~   94 (113)
T d1nfdb1          72 YHSEMNMSALELEDSAMYFCASS   94 (113)
T ss_dssp             SCEEEECCSCCGGGCEEECEEEE
T ss_pred             CeEEEEecccCcCCceeEEEEee
Confidence            34689999999999999999865

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.47  E-value=0.018  Score=28.83  Aligned_cols=50  Identities=12%  Similarity=0.167  Sum_probs=26.1

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEE---eCCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMET---RGNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      .|+|.++|.++............   ....+.|.|..-.......|+|.+...
T Consensus        36 ~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~   88 (101)
T d1cqka_          36 TVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHE   88 (101)
T ss_dssp             EEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred             EEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEEC
Confidence            68999999876431000000000   011345555443333456799999764

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.45  E-value=0.21  Score=25.64  Aligned_cols=33  Identities=12%  Similarity=0.272  Sum_probs=25.3

Q ss_pred             CcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeec
Q psy3272          68 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        68 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      .++.+..+.  +...|.|.++..+|++.|.|....
T Consensus        66 gRftis~D~s~~t~~L~i~~l~~eDtAvYYCAr~~  100 (115)
T d1f3dh1          66 GKATLTVDKSSSTAFMHLNSLTFEDSAVYYCANDY  100 (115)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECT
T ss_pred             EEEEEeeccCceeeEeeeeecCcCCcEEEEEeccC
Confidence            456665543  456799999999999999997654

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.35  E-value=0.097  Score=27.08  Aligned_cols=33  Identities=24%  Similarity=0.402  Sum_probs=25.9

Q ss_pred             CcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeec
Q psy3272          68 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        68 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      .++.+..+.  +...|.|.++..+|++.|.|....
T Consensus        66 gRftiSrD~s~nt~yLqm~sL~~eDTAvYYCAr~~  100 (119)
T d1rz7h1          66 GRVTITADTSTDTGYLELSSLRSEDTAVYYCAADP  100 (119)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECT
T ss_pred             eeEEEecccCceEEEeeeeccCcccceEEEEeecC
Confidence            366666643  456799999999999999998754

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.34  E-value=0.11  Score=25.73  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=20.1

Q ss_pred             EEEEeccCCCCCeeeEEEeecCc
Q psy3272          80 TLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        80 ~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      -++|.++...+.|.|.|.|....
T Consensus        60 Gf~I~~~~~~~~g~y~C~a~~~g   82 (95)
T d1fltx_          60 GFIISNATYKEIGLLTCEATVNG   82 (95)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETT
T ss_pred             CEEEeCCCcccCeEEEEEEEECC
Confidence            38899999999999999998654

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.31  E-value=0.23  Score=25.51  Aligned_cols=34  Identities=18%  Similarity=0.359  Sum_probs=25.9

Q ss_pred             CcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          68 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        68 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .++.+..+.  +...|.|.++..+|++.|.|.....
T Consensus        65 gRftiS~D~s~n~~~L~~~sL~~eDtAvYYCAr~~~  100 (117)
T d1c5db1          65 SRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDG  100 (117)
T ss_dssp             SSEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCS
T ss_pred             cceEEecccccceeeccccccccCcceEEEEeccCC
Confidence            356666543  4568999999999999999976543

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.22  E-value=0.13  Score=26.67  Aligned_cols=34  Identities=18%  Similarity=0.347  Sum_probs=26.2

Q ss_pred             CcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          68 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        68 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .++.+..+.  +...|.|.++..+|++.|.|.....
T Consensus        66 gR~tis~D~s~~~~~L~i~sL~~eDtAvYYCAr~~~  101 (121)
T d1ol0a_          66 GRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAREPR  101 (121)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCS
T ss_pred             eeeEEeccccceeEEeeeeecccccceEEEEEEecC
Confidence            366666653  4568999999999999999986543

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.22  E-value=0.033  Score=28.28  Aligned_cols=24  Identities=17%  Similarity=0.494  Sum_probs=20.3

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeec
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ....|.|.++.++|+|.|.|-+..
T Consensus        69 ~~~~L~i~~~~~~Dsa~YyCA~~~   92 (112)
T d2cdeb1          69 EHFPLTLESARPSHTSQYLCASSE   92 (112)
T ss_dssp             SBCCEEBSSCCTTTCSEEEEEEEC
T ss_pred             CceEeeeccccccccccEEEEEec
Confidence            346799999999999999998754

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=93.20  E-value=0.15  Score=25.97  Aligned_cols=32  Identities=25%  Similarity=0.427  Sum_probs=25.6

Q ss_pred             cEEEEEeC--CeEEEEEeccCCCCCeeeEEEeec
Q psy3272          69 RRLMETRG--NKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        69 ~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      ++.+..+.  +...|.|.++..+|++.|.|.-..
T Consensus        69 R~tiS~D~s~~t~~L~i~sL~~eDTAvYYCAr~~  102 (109)
T d2ck0h1          69 RFTISRDDSQSMLYLQMNNLKTEDTGIYYCVRGR  102 (109)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CceeccccccceeEecccCCCHhHCEEEEEEEcC
Confidence            66666653  556899999999999999998654

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.20  E-value=0.14  Score=26.78  Aligned_cols=34  Identities=21%  Similarity=0.329  Sum_probs=26.6

Q ss_pred             CcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          68 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        68 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .++.+..+.  +...|.|.++..+|++.|.|.....
T Consensus        66 gR~tiS~D~s~~t~yL~~~sL~~eDTA~YYCAr~~~  101 (128)
T d2nxyd1          66 GRVTITADKSTSTVYLELRNLRSDDTAVYFCAGVYE  101 (128)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEC
T ss_pred             EEEEEeecCCCceEEeeeeeccccCceEEEEeEEec
Confidence            466666653  5667999999999999999987543

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.18  E-value=0.071  Score=26.80  Aligned_cols=49  Identities=16%  Similarity=0.188  Sum_probs=26.7

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEE--eC-----CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMET--RG-----NKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~--~~-----~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|.+||..+..  ........  ..     ..+.|.|..-.......|+|.+....
T Consensus        38 ~v~W~~ng~~~~~--~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~   93 (107)
T d1mjul2          38 NVKWKIDGSERQN--GVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKT   93 (107)
T ss_dssp             EEEEEETTEEECT--TEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTT
T ss_pred             EEEEEECCEEccC--CeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            6899999987653  11000000  01     12455555444333458999998643

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=93.17  E-value=0.093  Score=25.71  Aligned_cols=45  Identities=13%  Similarity=0.306  Sum_probs=24.4

Q ss_pred             ceEEEECCEEeCCCCCCCEE---EEEeC----CeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRL---METRG----NKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~---~~~~~----~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      .|+|.++|..+..  .....   .....    ..+.|.+.   ..+...|+|.+...
T Consensus        33 ~v~W~~~g~~~~~--~~~~~~~~~~~~~~ty~~~s~l~v~---~~~~~~ytC~V~H~   84 (94)
T d1hyrc1          33 TLSWRQDGVSLSH--DTQQWGDVLPDGNGTYQTWVATRIC---QGEEQRFTCYMEHS   84 (94)
T ss_dssp             EEEEEETTEECCS--TTSEECCCEECSSSCEEEEEEEEEE---TTCGGGEEEEEEET
T ss_pred             EEEEeECCeEcCC--CeEEcCceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEEC
Confidence            6899999988764  22111   01111    12334433   33445799999764

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=93.05  E-value=0.13  Score=26.61  Aligned_cols=35  Identities=23%  Similarity=0.352  Sum_probs=26.4

Q ss_pred             CcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          68 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        68 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      .++.+..+.  +...|.|.++..+|++.|.|......
T Consensus        66 gRftiSrD~s~nt~~L~~~sL~~eDtAvYYCAr~~~~  102 (118)
T d2fbjh1          66 DKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLHYY  102 (118)
T ss_dssp             TTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             eeEEEeecCccceeeccccccCCCcceEEEeeEecCC
Confidence            355666543  45679999999999999999876543

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=93.03  E-value=0.22  Score=25.81  Aligned_cols=34  Identities=24%  Similarity=0.362  Sum_probs=26.0

Q ss_pred             CcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          68 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        68 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .++.+..+.  +...|.|.++..+|++.|.|.....
T Consensus        66 gR~tis~D~s~nt~~L~i~~L~~eDtAvYYCAr~~~  101 (123)
T d1mqkh_          66 GRFTISRDNAKNTLYLQMSSLKSEDTAMYYCVRHEY  101 (123)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEEEEecCcccccccceeeeccCcccceeEEecCC
Confidence            356666543  4567999999999999999986654

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=93.02  E-value=0.084  Score=27.36  Aligned_cols=32  Identities=22%  Similarity=0.426  Sum_probs=24.3

Q ss_pred             CCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEe
Q psy3272          18 SDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVA   49 (115)
Q Consensus        18 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~   49 (115)
                      ..|+++..  ..+...|.|.+++.+|++.|.|..
T Consensus        64 kgRftiS~D~s~nt~~L~i~~l~~eDtA~YYCAr   97 (120)
T d1dn0b1          64 KSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR   97 (120)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eeeeEEeccCchheecccccccccccccEEEEEe
Confidence            45666554  334577999999999999999953

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=93.01  E-value=0.049  Score=27.44  Aligned_cols=47  Identities=13%  Similarity=0.120  Sum_probs=24.3

Q ss_pred             ceEEEECCEEeCCCCCCCEE--EEEeC---CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRL--METRG---NKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~--~~~~~---~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|.+||..+..  .....  .....   ..+.|.+.....  ...|+|.+....
T Consensus        42 ~v~W~~~g~~~~~--~~~~~~~~~~~gt~~~~S~L~v~~~~w--~~~ytC~V~H~s   93 (107)
T d1hxmb2          42 KIHWEEKKSNTIL--GSQEGNTMKTNDTYMKFSWLTVPEKSL--DKEHRCIVRHEN   93 (107)
T ss_dssp             EEEEEESSSCCCC--CCEECCCEECSSSEEEEEEEEECTGGG--GSCEEEEEEETT
T ss_pred             EEEEEECCeEccC--CEEccceecCCCeEEEEEEEEEecccC--CCeEEEEEEECC
Confidence            6899999986643  11110  11111   124455533322  236999998654

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.97  E-value=0.062  Score=27.84  Aligned_cols=34  Identities=15%  Similarity=0.245  Sum_probs=25.8

Q ss_pred             CcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          68 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        68 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .++.+..+.  +...|.|.++..+|++.|.|...-.
T Consensus        66 gR~tis~d~s~~~~~L~i~~L~~eDsAvYYCA~~~~  101 (119)
T d1qnzh_          66 GKAKLTVEKSSSTVYLEFSRLTSDDSAVYYCAIHYG  101 (119)
T ss_dssp             TTEEEEEETTTTEEEEEEEEECGGGCEEEEEEECSS
T ss_pred             ccceeecccccceeeeeecccCccceeEEEEEEecC
Confidence            355555543  4567999999999999999976544

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.93  E-value=0.047  Score=27.57  Aligned_cols=33  Identities=12%  Similarity=0.270  Sum_probs=20.7

Q ss_pred             CCCEEEE--EeCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLME--TRGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~--~~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..|+++.  ...+...|+|.+++.+|++.|-|...
T Consensus        52 ~~R~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAr~   86 (103)
T d1oari_          52 KSKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARM   86 (103)
T ss_dssp             TTTEEEEC----CEEEEEECCC---CCSEEEEEEE
T ss_pred             eeceEEeccccccEEEeeeeeccccccEEEEeEEE
Confidence            4555544  23445689999999999999999754

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.90  E-value=0.15  Score=26.26  Aligned_cols=34  Identities=18%  Similarity=0.307  Sum_probs=25.6

Q ss_pred             CCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          18 SDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        18 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ..|+.+..  ..+...|+|.+++.+|++.|.|....
T Consensus        65 ~gR~tiS~D~s~~t~~L~i~~L~~eDtAvYYCA~~~  100 (117)
T d1iqdb1          65 QGSVTMTADTSTNIAYMELSSLRSDDTAVYYCAVPD  100 (117)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             eeeeeeecccccceEEEeecccCcCcceEEEEeEcC
Confidence            45555543  33456799999999999999998654

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=92.87  E-value=0.15  Score=26.29  Aligned_cols=34  Identities=24%  Similarity=0.464  Sum_probs=25.5

Q ss_pred             CcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          68 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        68 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .++.+..+.  +...|.|.++..+|++.|.|.....
T Consensus        66 gR~tiSrD~s~nt~yL~m~~L~~eDTAvYYCAr~~~  101 (117)
T d1jpth1          66 DRATISADNSKNTAYLQMNSLRAEDTAVYYCARDTA  101 (117)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             eeEEEEeccccceEEecccccCCCCceEEEEeecCC
Confidence            355555543  4567999999999999999976543

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.86  E-value=0.092  Score=26.31  Aligned_cols=48  Identities=8%  Similarity=0.194  Sum_probs=26.8

Q ss_pred             ceEEEECCEEeCCCCCCCEE--EEEeC-----CeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRL--METRG-----NKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~--~~~~~-----~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      .|+|++||..+..  .....  .....     ..+.|.|..-.......|+|.+...
T Consensus        37 ~v~W~~~g~~~~~--~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~   91 (105)
T d1fp5a2          37 SVQWLHNEVQLPD--ARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHE   91 (105)
T ss_dssp             EEEEEETTEECCG--GGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECT
T ss_pred             EEEEEECCEECCC--ceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEEC
Confidence            6899999987653  11000  00011     1345665544434455899999864

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=92.82  E-value=0.14  Score=26.54  Aligned_cols=34  Identities=21%  Similarity=0.331  Sum_probs=26.2

Q ss_pred             CcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          68 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        68 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .++.+..+.  +...|.|.++..+|++.|.|.....
T Consensus        66 gRftiSrD~s~~t~yL~m~sL~~eDTAvYYCAr~~~  101 (122)
T d1bz7b1          66 GRFTISRDNPKNTLFLQMTSLRSEDTAIYYCTRGGT  101 (122)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECC
T ss_pred             eeEEEeccCCccEeEeeeeeecccCceEEEeecCCC
Confidence            456666553  5568999999999999999987543

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.81  E-value=0.022  Score=28.48  Aligned_cols=51  Identities=10%  Similarity=0.122  Sum_probs=26.5

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEe---CCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETR---GNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|.+||................   ...+.|.+..-.....-.|+|.+....
T Consensus        37 ~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          37 AVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             EEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             EEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            789999998765410000000000   113455555443333347999998643

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.80  E-value=0.058  Score=27.14  Aligned_cols=49  Identities=16%  Similarity=0.269  Sum_probs=26.7

Q ss_pred             ceEEEECCEEeCCCCCCCEEEE-E-e-----CCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLME-T-R-----GNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~-~-~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|.+||..+..  ....... . .     ...+.|.|..-.......|+|.+....
T Consensus        38 ~v~W~~ng~~~~~--~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   93 (107)
T d1c5cl2          38 KVQWKVDNALQSG--NSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQG   93 (107)
T ss_dssp             EEEEEETTEECCS--SEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTT
T ss_pred             EEEEEECCEECCC--CEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            6899999986643  1111000 0 0     113456665443333448999998643

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=92.75  E-value=0.045  Score=27.92  Aligned_cols=32  Identities=28%  Similarity=0.461  Sum_probs=24.5

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .|+++...  .+...|+|.+++.+|++.|.|-..
T Consensus        68 gR~tiS~D~s~~t~~L~i~sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          68 DRFTISRDDSQSMLYLQMNNLKTEDTGIYYCVRG  101 (109)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cCceeccccccceeEecccCCCHhHCEEEEEEEc
Confidence            46655432  456789999999999999999853

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=92.69  E-value=0.041  Score=28.44  Aligned_cols=33  Identities=24%  Similarity=0.464  Sum_probs=24.4

Q ss_pred             CCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..|+.+..  ..+...|.|.+++.+|++.|.|...
T Consensus        65 kgR~tiSrD~s~nt~yL~m~~L~~eDTAvYYCAr~   99 (117)
T d1jpth1          65 QDRATISADNSKNTAYLQMNSLRAEDTAVYYCARD   99 (117)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeeEEEEeccccceEEecccccCCCCceEEEEeec
Confidence            44555443  2456789999999999999999653

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.67  E-value=0.13  Score=26.92  Aligned_cols=33  Identities=21%  Similarity=0.346  Sum_probs=25.6

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..|+++...  .+...|.|.+++.+|++.|.|...
T Consensus        65 kgR~tiS~D~s~~t~yL~~~sL~~eDTA~YYCAr~   99 (128)
T d2nxyd1          65 QGRVTITADKSTSTVYLELRNLRSDDTAVYFCAGV   99 (128)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eEEEEEeecCCCceEEeeeeeccccCceEEEEeEE
Confidence            456665543  456789999999999999999864

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=92.66  E-value=0.05  Score=28.25  Aligned_cols=32  Identities=22%  Similarity=0.417  Sum_probs=23.7

Q ss_pred             CCEEEEE--eCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          19 DRRLMET--RGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        19 ~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .|+.+..  ......|+|.+++++|++.|.|...
T Consensus        67 gRft~s~d~s~~~~~L~i~~l~~eDsAvYyCAr~  100 (120)
T d2agjh1          67 SRLTITKDASKKQVVLTLTNLDPVDTATYYCART  100 (120)
T ss_dssp             SSEEEECCTTTTEEEEEEESCCGGGCEEEEEEEE
T ss_pred             cccceecccccceeeeeEEeeeeccceEEeeEec
Confidence            4555442  2345789999999999999999743

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=92.65  E-value=0.047  Score=28.19  Aligned_cols=33  Identities=24%  Similarity=0.413  Sum_probs=24.9

Q ss_pred             CCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..|+.+..  ..+...|+|.+++.+|++.|.|...
T Consensus        64 kgR~tis~D~s~~~~~L~i~~L~~eDtAvYyCAr~   98 (116)
T d7fabh1          64 RGRVTMLVNTSKNQFSLRLSSVTAADTAVYYCARN   98 (116)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eecceeecccchhhhhccccccccccceEEEeeee
Confidence            35555543  3346789999999999999999754

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.56  E-value=0.024  Score=28.41  Aligned_cols=50  Identities=14%  Similarity=0.127  Sum_probs=26.2

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEe---CCeEEEEEecCCCCCCeEEEEEeecC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETR---GNKHTLTIKNVQSTDFGNYSCVADNN   52 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~~~   52 (115)
                      .|+|.++|.++.............   ...+.|.|..-.......|+|.+...
T Consensus        37 ~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~   89 (102)
T d1i1ca2          37 YTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHE   89 (102)
T ss_dssp             EEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred             EEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeC
Confidence            689999998764310000000000   01244555554434445799999764

>d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment {Sheep (Ovis aries) [TaxId: 9940]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=92.49  E-value=0.016  Score=26.76  Aligned_cols=35  Identities=29%  Similarity=0.299  Sum_probs=19.8

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCCeEEEEEecCCCCCCeEEEEE
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCV   48 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   48 (115)
                      +|+|++++..+..  ..         ..++-+-....+--|.|.|.
T Consensus        18 sI~w~k~~~~~~~--~~---------~ktlnLG~~~~DPRGiY~C~   52 (66)
T d1xmwa2          18 SITLLQGTAGQEV--SD---------NKTLNLGKRIEDPRGMYQCG   52 (66)
T ss_dssp             SCEEEEECCCCBS--SS---------SSBBCCBCSTTCCEEEEECC
T ss_pred             eEEEccCcccccc--CC---------CcEEeCCCcccCCCcceECC
Confidence            6899998764443  11         22233323333445999994

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.48  E-value=0.05  Score=28.20  Aligned_cols=33  Identities=24%  Similarity=0.410  Sum_probs=24.9

Q ss_pred             CCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..|+.+..  ..+...|+|.+++.+|++.|.|...
T Consensus        65 kgRftiSrD~s~nt~yLqm~sL~~eDTAvYYCAr~   99 (119)
T d1rz7h1          65 RGRVTITADTSTDTGYLELSSLRSEDTAVYYCAAD   99 (119)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             eeeEEEecccCceEEEeeeeccCcccceEEEEeec
Confidence            34655543  3456789999999999999999764

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=92.35  E-value=0.12  Score=26.13  Aligned_cols=33  Identities=15%  Similarity=0.257  Sum_probs=25.5

Q ss_pred             cEEEEEeC--CeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          69 RRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        69 ~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ++.+..+.  +...|.|.++..+|++.|.|.....
T Consensus        59 R~tiSrd~s~n~~~L~i~~l~~eDtAvYyCA~~~~   93 (107)
T d1sjva_          59 RFTISRDNAKKTVYLEMNSLEPEDTAVYYCYTHYF   93 (107)
T ss_dssp             CEEEEECTTTCCEEEEECSCCGGGCSEEEEEECCC
T ss_pred             ceEEecCCceeEEEEeecCCCcccceeeeEeccCC
Confidence            56666543  4567999999999999999986543

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.33  E-value=0.14  Score=26.73  Aligned_cols=33  Identities=15%  Similarity=0.344  Sum_probs=26.0

Q ss_pred             CcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeec
Q psy3272          68 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        68 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      .++.+..+.  +...|.|.++..+|++.|.|....
T Consensus        66 gR~tiSrD~s~~t~yL~~~sL~~eDTavYYCAR~~  100 (127)
T d2fx7h1          66 GRITITADRSTSTAYLELNSLRPEDTAVYYCAREG  100 (127)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             eeEEEeccCccceEeeeecccCcccceEEEEeecc
Confidence            466666653  456899999999999999998654

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.33  E-value=0.054  Score=27.96  Aligned_cols=33  Identities=18%  Similarity=0.345  Sum_probs=24.7

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..|+++...  .+...|+|.+++.+|++.|.|-..
T Consensus        64 kgRftiS~D~s~n~~~L~~~sL~~eDtAvYYCAr~   98 (117)
T d1c5db1          64 KSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTRE   98 (117)
T ss_dssp             SSSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             ccceEEecccccceeeccccccccCcceEEEEecc
Confidence            456665432  345789999999999999999654

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.30  E-value=0.079  Score=26.60  Aligned_cols=49  Identities=12%  Similarity=0.280  Sum_probs=26.6

Q ss_pred             ceEEEECCEEeCCCCCCCEEE---E--EeC-----CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLM---E--TRG-----NKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~---~--~~~-----~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|++||..+..  ......   .  ...     ..+.|.|..-.......|+|.+....
T Consensus        38 ~v~W~~~g~~~~~--~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          38 LVRWLQGSQELPR--EKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEA   96 (108)
T ss_dssp             EEEEEETTEECCG--GGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTT
T ss_pred             EEEEEECCeEcCC--CceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeCC
Confidence            6999999988754  111100   0  000     12445554433333458999997643

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=92.29  E-value=0.076  Score=27.28  Aligned_cols=51  Identities=12%  Similarity=0.285  Sum_probs=25.5

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCC---eEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGN---KHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|+++|..+...............   .+.|.|..-.-.....|+|.+....
T Consensus        52 ~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~  105 (119)
T d1igtb3          52 QISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKD  105 (119)
T ss_dssp             EEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTT
T ss_pred             EEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECC
Confidence            57899999877542111111111111   2334433222223357999998643

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=92.28  E-value=0.2  Score=26.12  Aligned_cols=34  Identities=21%  Similarity=0.395  Sum_probs=26.3

Q ss_pred             CCcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeec
Q psy3272          67 SDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        67 ~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      ..++.+..+.  +...|.|.++..+|++.|.|....
T Consensus        65 kgR~tiS~D~s~nt~~L~~~~L~~eDtavYYCAr~~  100 (126)
T d1dfbh1          65 KGRFTISRDNAKNSLYLQMNSLRAEDMALYYCVKGR  100 (126)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             ccceEEeccCCCcEEEeeeeeeccCcceEEEEEecc
Confidence            3466666653  456799999999999999998653

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=92.28  E-value=0.24  Score=25.60  Aligned_cols=33  Identities=18%  Similarity=0.306  Sum_probs=25.8

Q ss_pred             cEEEEEe--CCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          69 RRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        69 ~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ++.+..+  .+...|.|.++..+|++.|.|.....
T Consensus        69 RftiS~D~s~n~~~L~~~~L~~eDtAvYYCA~~~~  103 (120)
T d1dlfh_          69 RFTISRDDSKRRVYLQMNTLRAEDTGIYYCTGIYY  103 (120)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEBT
T ss_pred             cceeecccccceeccceeeccCCCceEEEeeEecC
Confidence            5666665  34578999999999999999986543

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=92.27  E-value=0.13  Score=26.47  Aligned_cols=58  Identities=10%  Similarity=0.221  Sum_probs=36.4

Q ss_pred             EEEEEeecCCcceeEEE-EEe--c------ccCCcEEEEEe--CCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          44 NYSCVADNNLGRAKKYM-ELS--V------SVSDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~~-~v~--g------~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .|.-.+.+..+....-+ .+.  |      .-..++.+..+  .+...|.|.++..+|++.|.|.-...
T Consensus        32 y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eDTAvYYCAr~~~  100 (116)
T d1a2yb_          32 YGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARERD  100 (116)
T ss_dssp             SEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeeccceEEEEEEeCC
Confidence            45666666665554422 221  1      11224555553  34568999999999999999986543

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.22  E-value=0.057  Score=27.89  Aligned_cols=32  Identities=19%  Similarity=0.333  Sum_probs=24.3

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEe
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVA   49 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~   49 (115)
                      +.|+++...  .+...|+|.+++.+|++.|.|..
T Consensus        65 kgRfTiS~D~s~~t~yLq~~~L~~eDTAvYYCAr   98 (117)
T d1jnhb1          65 KGKATLTADRSSSIVYLQLNSLTSEDSAVYSCSR   98 (117)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eEEEEEeccCccceeeecccccCCCcceEEEEee
Confidence            456655432  34578999999999999999965

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.20  E-value=0.047  Score=28.33  Aligned_cols=33  Identities=15%  Similarity=0.272  Sum_probs=24.4

Q ss_pred             CCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..|+++..  ..+...|+|.+++.+|++.|.|-..
T Consensus        65 ~gR~tis~d~s~~~~~L~i~~L~~eDsAvYYCA~~   99 (119)
T d1qnzh_          65 KGKAKLTVEKSSSTVYLEFSRLTSDDSAVYYCAIH   99 (119)
T ss_dssp             TTTEEEEEETTTTEEEEEEEEECGGGCEEEEEEEC
T ss_pred             cccceeecccccceeeeeecccCccceeEEEEEEe
Confidence            34565543  2345679999999999999999653

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=92.17  E-value=0.21  Score=25.82  Aligned_cols=33  Identities=21%  Similarity=0.405  Sum_probs=25.4

Q ss_pred             CCcEEEEEeC--CeEEEEEeccCCCCCeeeEEEee
Q psy3272          67 SDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVAD   99 (115)
Q Consensus        67 ~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~   99 (115)
                      ..++.+..+.  +...|.|.++..+|++.|.|...
T Consensus        64 kgRftiS~D~s~nt~~L~i~~l~~eDtA~YYCAr~   98 (120)
T d1dn0b1          64 KSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARP   98 (120)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             eeeeEEeccCchheecccccccccccccEEEEEee
Confidence            3466666643  45679999999999999999644

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=92.15  E-value=0.052  Score=28.06  Aligned_cols=31  Identities=19%  Similarity=0.354  Sum_probs=23.2

Q ss_pred             CCEEEEE--eCCeEEEEEecCCCCCCeEEEEEe
Q psy3272          19 DRRLMET--RGNKHTLTIKNVQSTDFGNYSCVA   49 (115)
Q Consensus        19 ~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~   49 (115)
                      .|+++..  ..+...|+|.+++.+|++.|-|-.
T Consensus        66 gRftisrD~s~~tvyL~~~~L~~eDtAvYYCAr   98 (118)
T d1nlbh1          66 GRFAFSLETSASTAYLQINSLKNEDTATYFCAR   98 (118)
T ss_dssp             SSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eeeEEEecCCceeEEeeeeecccCcceEEEEee
Confidence            4555443  235577999999999999999953

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=92.14  E-value=0.057  Score=28.27  Aligned_cols=32  Identities=25%  Similarity=0.453  Sum_probs=24.4

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEe
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVA   49 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~   49 (115)
                      ..|+.+...  .+...|+|.+++.+|++.|.|-.
T Consensus        66 ~~Rftis~d~s~~t~~L~i~~l~~eDtAvYyCAr   99 (126)
T d1etzb1          66 KSRLTVSKDTSSNQVFLKITSVDTSDTATYHCAR   99 (126)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eEeeEEecccCCcEEEcceecccccccceEEEEE
Confidence            345665443  34578999999999999999975

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=92.12  E-value=0.057  Score=28.03  Aligned_cols=32  Identities=22%  Similarity=0.358  Sum_probs=23.9

Q ss_pred             CCEEEEE--eCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          19 DRRLMET--RGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        19 ~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .|+++..  ..+...|+|.+++.+|++.|.|...
T Consensus        67 gRfTiSrD~s~n~~~L~~~sL~~eDtAvYYCAr~  100 (120)
T d1ai1h1          67 SRSTISRDTSLNKFFIQLISVTNEDTAMYYCSRE  100 (120)
T ss_dssp             TTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             ccceeccccccceeecceeeeeccceeEEEEEec
Confidence            4555443  2345779999999999999999743

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=92.12  E-value=0.029  Score=28.07  Aligned_cols=51  Identities=10%  Similarity=0.131  Sum_probs=25.4

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEE---eCCeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMET---RGNKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .|+|.++|...............   ....+.|.|..-.-.....|+|.+....
T Consensus        37 ~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          37 YVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             EEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             EEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            68999999764321000000000   0113455554443233457999998643

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=92.07  E-value=0.22  Score=25.77  Aligned_cols=34  Identities=18%  Similarity=0.373  Sum_probs=26.3

Q ss_pred             CcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          68 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        68 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .++.+..+.  +...|.|.++..+|++.|.|.....
T Consensus        68 gRftiSrD~s~nt~~L~~~sL~~eDTAvYYCar~~~  103 (122)
T d1q9rb1          68 GRFTISRDNSQSILYLQMNTLRAEDSATYYCARDHD  103 (122)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCC
T ss_pred             ecceeeeecccceeccceeeeccCcceEEEEEecCC
Confidence            356666653  4567999999999999999987544

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=92.06  E-value=0.19  Score=25.69  Aligned_cols=33  Identities=21%  Similarity=0.365  Sum_probs=25.6

Q ss_pred             CcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeec
Q psy3272          68 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        68 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      .++.+..+.  +...|.|.++..+|++.|.|....
T Consensus        66 gRftiSrD~s~nt~~L~~~~L~~eDtAvYYCA~~~  100 (114)
T d1indh1          66 GRFTISRDNAQNNLYLQLNSLRSEDTALYFCASHR  100 (114)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEECGG
T ss_pred             eeEEEeccCccceeeeeeeeeccCcccEEEECCCC
Confidence            366666653  456799999999999999997543

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=92.01  E-value=0.061  Score=27.94  Aligned_cols=33  Identities=18%  Similarity=0.347  Sum_probs=24.8

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..|+++...  .+...|+|.+++.+|++.|.|...
T Consensus        65 kgR~tis~D~s~~~~~L~i~sL~~eDtAvYYCAr~   99 (121)
T d1ol0a_          65 RGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARE   99 (121)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             eeeeEEeccccceeEEeeeeecccccceEEEEEEe
Confidence            345555433  445789999999999999999754

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.00  E-value=0.28  Score=25.48  Aligned_cols=57  Identities=11%  Similarity=0.263  Sum_probs=36.9

Q ss_pred             EEEEEeecCCcceeEEE-EEe---------cccCCcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeec
Q psy3272          44 NYSCVADNNLGRAKKYM-ELS---------VSVSDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~~-~v~---------g~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      .|...+.+..+...--+ .+.         .....++.+..+.  +...|.|.++..+|++.|.|....
T Consensus        32 y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~eDtAvYYCAR~~  100 (125)
T d1rihh1          32 YWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTSEDSAVYYCARES  100 (125)
T ss_dssp             SCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCcccceEEEEeeeC
Confidence            45666666666555422 221         1123466666653  456799999999999999998654

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=91.97  E-value=0.3  Score=25.42  Aligned_cols=33  Identities=15%  Similarity=0.250  Sum_probs=26.0

Q ss_pred             CcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeec
Q psy3272          68 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        68 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      .++.+..+.  +...|.|.++..+|++.|.|....
T Consensus        66 gRftiSrD~s~~t~~Lqm~sL~~eDTAvYYCAr~~  100 (125)
T d1op3h1          66 GRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARKG  100 (125)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             cceEEeccCccceEeeeeeccCCccceeEeEeecc
Confidence            356666653  567899999999999999998654

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=91.92  E-value=0.15  Score=26.33  Aligned_cols=32  Identities=19%  Similarity=0.286  Sum_probs=24.2

Q ss_pred             CcEEEEEeC--CeEEEEEeccCCCCCeeeEEEee
Q psy3272          68 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVAD   99 (115)
Q Consensus        68 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~   99 (115)
                      .++.+..+.  +...|.|.++..+|++.|.|...
T Consensus        66 gRftisrD~s~~tvyL~~~~L~~eDtAvYYCAr~   99 (118)
T d1nlbh1          66 GRFAFSLETSASTAYLQINSLKNEDTATYFCARF   99 (118)
T ss_dssp             SSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeeEEEecCCceeEEeeeeecccCcceEEEEeee
Confidence            355555543  45679999999999999999643

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=91.81  E-value=0.41  Score=24.67  Aligned_cols=64  Identities=19%  Similarity=0.222  Sum_probs=40.5

Q ss_pred             CCCCCeEEEEEeecCCcceeE-EEEEe--c------ccCCcEEEEEe--CCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          38 QSTDFGNYSCVADNNLGRAKK-YMELS--V------SVSDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        38 ~~~d~G~y~C~~~~~~~~~~~-~~~v~--g------~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ...+...|...+++..+.... .+.+.  +      ....++....+  .+...|.|.++..+|++.|.|.....
T Consensus        28 s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~eDsAvYyCAr~~~  102 (120)
T d2agjh1          28 SLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPVDTATYYCARTSG  102 (120)
T ss_dssp             CTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGGGCEEEEEEEECS
T ss_pred             CccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeeccceEEeeEecCC
Confidence            444555667788776665444 23331  1      12345555543  34678999999999999999985543

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=91.80  E-value=0.088  Score=27.57  Aligned_cols=32  Identities=22%  Similarity=0.380  Sum_probs=25.1

Q ss_pred             cEEEEEe--CCeEEEEEeccCCCCCeeeEEEeec
Q psy3272          69 RRLMETR--GNKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        69 ~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      ++.+..+  .+...|+|.++..+|++.|.|....
T Consensus        72 R~tis~d~s~~~~~L~i~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          72 RFAVSRDNAKNTVNLQMNSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             TEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             ceeEeccCCceEEEEeeecccccceeEEEEEEEe
Confidence            5555554  3566899999999999999998653

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=91.77  E-value=0.27  Score=25.37  Aligned_cols=34  Identities=21%  Similarity=0.319  Sum_probs=26.1

Q ss_pred             CCcEEEEEe--CCeEEEEEeccCCCCCeeeEEEeec
Q psy3272          67 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        67 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      ..++.+..+  .+...|.|.++..+|++.|.|....
T Consensus        65 kgR~TiS~D~s~nt~~L~~~sL~~eDTAvYYCAr~~  100 (119)
T d1ncwh1          65 KSRISITRDTSKNQFFLQLNSVTTEDTATYYCAGLL  100 (119)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cccceEecccccceeeccccccccCCceEEEEeEec
Confidence            345666664  3567899999999999999997554

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=91.77  E-value=0.058  Score=27.95  Aligned_cols=32  Identities=19%  Similarity=0.324  Sum_probs=24.4

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .|+.+...  .+...|+|.+++.+|++.|.|...
T Consensus        64 gR~tiS~D~s~~~~~L~i~~L~~eDtA~YYCAr~   97 (119)
T d1kxvc_          64 GRFTISQGNAKNTAYLQMDSLKPDDTAMYYCKPS   97 (119)
T ss_dssp             TTEEEEECSSTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceEEecccCCcceecccccCCcCCcceEeeeec
Confidence            45665432  345689999999999999999754

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.76  E-value=0.2  Score=26.03  Aligned_cols=34  Identities=12%  Similarity=0.242  Sum_probs=26.3

Q ss_pred             CCcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeec
Q psy3272          67 SDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        67 ~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      ..++.+..+.  +...|.|.++..+|++.|.|....
T Consensus        65 kgR~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAR~~  100 (124)
T d1yedb1          65 KGKATLTADKSSSTAYMQLSSLKSEDSAVYFCTRWG  100 (124)
T ss_dssp             BTTEEEEEETTTTEEEEEEESCCGGGCEEEEEEECC
T ss_pred             ceeEEEEccCCcceEEecccccCCCcceEEEecccC
Confidence            3466666653  567899999999999999998654

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=91.75  E-value=0.061  Score=28.02  Aligned_cols=33  Identities=24%  Similarity=0.361  Sum_probs=24.5

Q ss_pred             CCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..|+++..  ..+...|+|.+++.+|++.|.|-..
T Consensus        65 kgR~tis~D~s~nt~~L~i~~L~~eDtAvYYCAr~   99 (123)
T d1mqkh_          65 KGRFTISRDNAKNTLYLQMSSLKSEDTAMYYCVRH   99 (123)
T ss_dssp             BTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cEEEEEEecCcccccccceeeeccCcccceeEEec
Confidence            34555543  2345679999999999999999754

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=91.74  E-value=0.27  Score=25.24  Aligned_cols=32  Identities=16%  Similarity=0.379  Sum_probs=24.0

Q ss_pred             CCEEEEE--eCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          19 DRRLMET--RGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        19 ~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .|+++..  ..+...|+|.+++.+|++.|.|-..
T Consensus        65 gR~tis~D~s~n~~~L~~~~l~~eDTAvYYCAr~   98 (116)
T d1a2yb_          65 SRLSISKDNSKSQVFLKMNSLHTDDTARYYCARE   98 (116)
T ss_dssp             GGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ccceEeccCCCceEEcceeeeeeccceEEEEEEe
Confidence            3455443  3345679999999999999999854

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=91.73  E-value=0.19  Score=26.43  Aligned_cols=31  Identities=26%  Similarity=0.464  Sum_probs=24.9

Q ss_pred             cEEEEEeC--CeEEEEEeccCCCCCeeeEEEee
Q psy3272          69 RRLMETRG--NKHTLTIKNVQSTDFGNYSCVAD   99 (115)
Q Consensus        69 ~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~   99 (115)
                      ++.+..+.  +...|.|.+++.+|++.|.|...
T Consensus        69 R~tiS~D~s~nt~~Lq~~~L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          69 RFTISRDDSKNTLYLQMNSLKTEDTAVYSCTTD  101 (131)
T ss_dssp             TEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEEecccccceeecceeccccCCceEEEEecc
Confidence            56666553  56789999999999999999865

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.72  E-value=0.07  Score=27.46  Aligned_cols=31  Identities=10%  Similarity=0.270  Sum_probs=23.4

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEe
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVA   49 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~   49 (115)
                      .|+.+...  .+...|.|.+++.+|++.|-|-.
T Consensus        66 gRftis~D~s~~t~~L~i~~l~~eDtAvYYCAr   98 (115)
T d1f3dh1          66 GKATLTVDKSSSTAFMHLNSLTFEDSAVYYCAN   98 (115)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEEEeeccCceeeEeeeeecCcCCcEEEEEec
Confidence            45555432  34567999999999999999964

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=91.69  E-value=0.062  Score=28.18  Aligned_cols=32  Identities=22%  Similarity=0.373  Sum_probs=24.4

Q ss_pred             CCEEEEE--eCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          19 DRRLMET--RGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        19 ~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .|+++..  ..+...|+|.+++.+|++.|.|...
T Consensus        71 gR~tis~d~s~~~~~L~i~~l~~eDtAvYYCAr~  104 (127)
T d1i3ua_          71 GRFAVSRDNAKNTVNLQMNSLKPEDTAVYYCAAK  104 (127)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceeEeccCCceEEEEeeecccccceeEEEEEEE
Confidence            4555543  2456789999999999999999864

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=91.67  E-value=0.072  Score=27.36  Aligned_cols=32  Identities=22%  Similarity=0.355  Sum_probs=24.1

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEe
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVA   49 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~   49 (115)
                      ..|+++...  .+...|+|.+++.+|++.|.|-.
T Consensus        65 kgRftiSrD~s~nt~~L~~~~L~~eDtAvYYCA~   98 (114)
T d1indh1          65 KGRFTISRDNAQNNLYLQLNSLRSEDTALYFCAS   98 (114)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEC
T ss_pred             eeeEEEeccCccceeeeeeeeeccCcccEEEECC
Confidence            345555432  34567999999999999999975

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.67  E-value=0.071  Score=27.66  Aligned_cols=33  Identities=15%  Similarity=0.353  Sum_probs=24.7

Q ss_pred             CCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..|+++..  ..+...|+|.+++.+|++.|.|...
T Consensus        65 kgR~tis~d~s~n~v~L~i~~l~~eDtA~YYCAr~   99 (120)
T d1pg7x1          65 KDKATLTVDRSSTTAYIELVRLTSNDSAVYYCARE   99 (120)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             hhcceeeeccCcceEEccccccCCCcceEEEeeec
Confidence            34555543  2345679999999999999999864

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.66  E-value=0.064  Score=27.79  Aligned_cols=31  Identities=13%  Similarity=0.274  Sum_probs=23.2

Q ss_pred             CCEEEEE--eCCeEEEEEecCCCCCCeEEEEEe
Q psy3272          19 DRRLMET--RGNKHTLTIKNVQSTDFGNYSCVA   49 (115)
Q Consensus        19 ~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~   49 (115)
                      .|+.+..  ..+...|.|.+++.+|++.|.|..
T Consensus        66 gRftiSrD~s~nt~~L~~~sL~~eDTAvYYCAr   98 (119)
T d1eapb1          66 VKATLTADQSSSTAYMQLNSLTSEDSAVYFCKR   98 (119)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cceEEEcccCcceEEeeeecccCCcceEEEEEE
Confidence            3555432  234578999999999999999964

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=91.60  E-value=0.073  Score=27.81  Aligned_cols=33  Identities=15%  Similarity=0.238  Sum_probs=25.0

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..|+++...  .+...|+|.+++.+|++.|.|...
T Consensus        65 kgRftiSrD~s~~t~~Lqm~sL~~eDTAvYYCAr~   99 (125)
T d1op3h1          65 KGRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARK   99 (125)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ccceEEeccCccceEeeeeeccCCccceeEeEeec
Confidence            345655432  456789999999999999999854

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=91.59  E-value=0.073  Score=27.89  Aligned_cols=33  Identities=15%  Similarity=0.341  Sum_probs=24.7

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..|+.+...  .+...|+|.+++.+|++.|.|...
T Consensus        65 kgR~tiSrD~s~~t~yL~~~sL~~eDTavYYCAR~   99 (127)
T d2fx7h1          65 QGRITITADRSTSTAYLELNSLRPEDTAVYYCARE   99 (127)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeeEEEeccCccceEeeeecccCcccceEEEEeec
Confidence            355554432  355789999999999999999854

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=91.55  E-value=0.063  Score=27.77  Aligned_cols=34  Identities=24%  Similarity=0.359  Sum_probs=24.8

Q ss_pred             CCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEeec
Q psy3272          18 SDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVADN   51 (115)
Q Consensus        18 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~~   51 (115)
                      ..|+++..  ..+...|+|.+++.+|++.|.|....
T Consensus        65 kgRftiSrD~s~nt~~L~~~sL~~eDtAvYYCAr~~  100 (118)
T d2fbjh1          65 KDKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLH  100 (118)
T ss_dssp             TTTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             eeeEEEeecCccceeeccccccCCCcceEEEeeEec
Confidence            34555543  23456799999999999999998543

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.55  E-value=0.075  Score=27.43  Aligned_cols=31  Identities=13%  Similarity=0.277  Sum_probs=23.2

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEe
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVA   49 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~   49 (115)
                      .|+.+...  .+...|+|.+++.+|++.|-|..
T Consensus        66 ~R~t~s~D~s~~~~~L~i~~L~~eDtAvYYCAr   98 (117)
T d1mfah1          66 AKTKLTAVTSTTTAYMELSSLTSEDSAVYYCTR   98 (117)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eeEEEEcccCccEeEeeecccCCCcceEEEEec
Confidence            45554432  34567999999999999999974

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.52  E-value=0.068  Score=27.64  Aligned_cols=31  Identities=16%  Similarity=0.318  Sum_probs=23.0

Q ss_pred             CCEEEEE--eCCeEEEEEecCCCCCCeEEEEEe
Q psy3272          19 DRRLMET--RGNKHTLTIKNVQSTDFGNYSCVA   49 (115)
Q Consensus        19 ~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~   49 (115)
                      .|+.+..  ..+...|.|.+++.+|++.|.|-.
T Consensus        66 gR~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAr   98 (118)
T d2jelh1          66 GKATMTVDKSSSTAYMELARLTSEDSAIYYCAR   98 (118)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ccEEEecccCcceEeecccccccCcceeeeEEE
Confidence            4554443  244568999999999999999953

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.50  E-value=0.076  Score=27.40  Aligned_cols=33  Identities=18%  Similarity=0.360  Sum_probs=24.5

Q ss_pred             CCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..|+.+..  ..+...|+|.+++.+|++.|-|...
T Consensus        64 kgRftiS~D~s~~t~~L~m~sL~~eDtAvYYCAr~   98 (117)
T d1um5h1          64 RGKATLTSDKSSNTAYLELSSLTSEDSAVYYCARS   98 (117)
T ss_dssp             TTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeeEEEEeccCceeEeecccccCCCcceEEEEeec
Confidence            35555543  2445679999999999999999753

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=91.49  E-value=0.036  Score=28.18  Aligned_cols=33  Identities=15%  Similarity=0.286  Sum_probs=24.4

Q ss_pred             CCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      +.|+.+..  ..+...|+|.+++.+|++.|.|...
T Consensus        57 kgR~tiSrd~s~n~~~L~i~~l~~eDtAvYyCA~~   91 (107)
T d1sjva_          57 KGRFTISRDNAKKTVYLEMNSLEPEDTAVYYCYTH   91 (107)
T ss_dssp             TTCEEEEECTTTCCEEEEECSCCGGGCSEEEEEEC
T ss_pred             ccceEEecCCceeEEEEeecCCCcccceeeeEecc
Confidence            34555543  2345679999999999999999753

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.42  E-value=0.069  Score=27.74  Aligned_cols=32  Identities=19%  Similarity=0.325  Sum_probs=23.9

Q ss_pred             CCEEEEE--eCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          19 DRRLMET--RGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        19 ~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .|+++..  ..+...|+|.+++.+|++.|.|...
T Consensus        66 gR~tis~D~s~~t~~L~i~~L~~eDtAvYYCAr~   99 (121)
T d1j05b_          66 GKATITADTSSNTAYLQLTSLTSEDTAVYYCAPF   99 (121)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceEEEeecCCceeeecccccCcCcceEEEeEee
Confidence            4555543  2345679999999999999999753

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=91.39  E-value=0.11  Score=27.19  Aligned_cols=32  Identities=25%  Similarity=0.400  Sum_probs=23.6

Q ss_pred             CCEEEEE--eCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          19 DRRLMET--RGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        19 ~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .|+++..  ..+...|+|.+++.+|++.|.|...
T Consensus        65 gR~tis~D~s~~~~~L~i~~l~~eDTAvYYCAr~   98 (126)
T d1rjca1          65 GRLTISLDNAKNTLYLQMNSLKPEDTAMYYCAAD   98 (126)
T ss_dssp             TTEEEEEEC--CEEEEEECSCCGGGCEEEEEEEC
T ss_pred             eeEEEEecCCceEEEEEEeccCcccCceeEEEee
Confidence            4565543  2345679999999999999999854

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=91.38  E-value=0.077  Score=27.99  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=24.7

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..|+++...  .+...|+|.+++.+|++.|.|-..
T Consensus        66 k~Rftis~d~s~~~~~L~i~~l~~eDtAvYYCAr~  100 (132)
T d1tjgh1          66 NTRLTITKDTSKNQVVLVMTRVSPVDTATYFCAHR  100 (132)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eecceecccccccEEEcccccCCcccceEEEEEEe
Confidence            356655432  345679999999999999999864

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=91.38  E-value=0.21  Score=26.19  Aligned_cols=33  Identities=12%  Similarity=0.278  Sum_probs=25.4

Q ss_pred             CcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeec
Q psy3272          68 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        68 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      .++.+..+.  +...|.|.++..+|++.|.|....
T Consensus        66 gR~tiS~D~s~~t~yL~~~sL~~eDtA~YYCAr~~  100 (130)
T d1rzga1          66 GRVSITADESTSTAYMELSSLRSEDTAVFYCASPY  100 (130)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECC
T ss_pred             cceEEecccccceEEeeeeecCCCccEEEEEEEec
Confidence            356666653  456799999999999999998643

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=91.37  E-value=0.079  Score=27.76  Aligned_cols=32  Identities=25%  Similarity=0.427  Sum_probs=24.2

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .|+++...  .+...|+|.+++.+|++.|.|...
T Consensus        66 gR~Tis~D~s~~t~yL~~~~L~~eDTA~YYCAr~   99 (127)
T d2fb4h1          66 GRFTISRNDSKNTLFLQMDSLRPEDTGVYFCARD   99 (127)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ceEEEeccCCccEEEeeeeeeeecceeEEEEEEe
Confidence            45555433  345789999999999999999754

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=91.35  E-value=0.08  Score=27.52  Aligned_cols=33  Identities=15%  Similarity=0.327  Sum_probs=24.7

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..|+.+...  .+...|.|.+++.+|++.|.|...
T Consensus        66 kgR~tiS~D~s~ntvyL~~~~L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          66 RGRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARD  100 (122)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eEeeEEeccCCcceeeecccccCCCcceEEEEeec
Confidence            356555432  345679999999999999999754

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=91.34  E-value=0.08  Score=27.52  Aligned_cols=32  Identities=19%  Similarity=0.347  Sum_probs=24.2

Q ss_pred             CCEEEEE--eCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          19 DRRLMET--RGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        19 ~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .|+.+..  ..+...|+|.+++.+|++.|.|...
T Consensus        68 gRftiSrD~s~nt~~L~~~sL~~eDTAvYYCar~  101 (122)
T d1q9rb1          68 GRFTISRDNSQSILYLQMNTLRAEDSATYYCARD  101 (122)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             ecceeeeecccceeccceeeeccCcceEEEEEec
Confidence            4555443  2345779999999999999999864

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.30  E-value=0.13  Score=26.48  Aligned_cols=34  Identities=26%  Similarity=0.385  Sum_probs=24.6

Q ss_pred             cEEEEEeC--CeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          69 RRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        69 ~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      ++.+..+.  +...|.|.++..+|++.|.|......
T Consensus        66 R~tis~D~s~~tv~L~~~~L~~eDTAvYyCAr~~~~  101 (116)
T d1fn4b1          66 RLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDLYG  101 (116)
T ss_dssp             TBCCEEEGGGTEEECCEESCCCCCCEEEEEEEECSS
T ss_pred             eEEEccccccchhhcceeccCCCCCEEEEEEeecCC
Confidence            34444432  45679999999999999999865443

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.29  E-value=0.083  Score=27.19  Aligned_cols=32  Identities=13%  Similarity=0.338  Sum_probs=24.1

Q ss_pred             CCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEe
Q psy3272          18 SDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVA   49 (115)
Q Consensus        18 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~   49 (115)
                      ..|+++..  ..+...|.|.+++.+|++.|.|-.
T Consensus        65 kgR~tiS~D~s~~tvyL~~~sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          65 KNKATLTVDTSSSTAYMQLSSLTSDDSAVYYCAN   98 (116)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceeeeEecccccceeEecccccCCCCceEEEEcc
Confidence            34655543  235578999999999999999974

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.28  E-value=0.15  Score=26.47  Aligned_cols=33  Identities=18%  Similarity=0.319  Sum_probs=25.5

Q ss_pred             CcEEEEEe--CCeEEEEEeccCCCCCeeeEEEeec
Q psy3272          68 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        68 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      .++.+..+  .+...|.|.++..+|++.|.|....
T Consensus        66 gR~tis~D~s~~t~~L~i~~L~~eDtAvYYCAr~~  100 (121)
T d1j05b_          66 GKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  100 (121)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEB
T ss_pred             cceEEEeecCCceeeecccccCcCcceEEEeEeec
Confidence            35666554  3456799999999999999998654

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.27  E-value=0.081  Score=27.62  Aligned_cols=33  Identities=18%  Similarity=0.436  Sum_probs=24.5

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..|+++...  .+...|.|.+++.+|++.|.|-..
T Consensus        65 ~~R~tis~D~s~n~vyL~l~sL~~eDtAvYYCAR~   99 (125)
T d1rihh1          65 KDKAILTADRSSNTAFMYLNSLTSEDSAVYYCARE   99 (125)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeeeEEecccCcceEeeeeeccCcccceEEEEeee
Confidence            345554432  345779999999999999999754

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=91.24  E-value=0.083  Score=27.62  Aligned_cols=33  Identities=21%  Similarity=0.389  Sum_probs=24.4

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..|+.+...  .+...|+|.+++.+|++.|.|...
T Consensus        65 kgR~tiS~D~s~nt~~L~~~~L~~eDtavYYCAr~   99 (126)
T d1dfbh1          65 KGRFTISRDNAKNSLYLQMNSLRAEDMALYYCVKG   99 (126)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ccceEEeccCCCcEEEeeeeeeccCcceEEEEEec
Confidence            345555432  345789999999999999999753

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=91.23  E-value=0.075  Score=27.65  Aligned_cols=33  Identities=21%  Similarity=0.318  Sum_probs=24.4

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..|+++...  .+...|+|.+++.+|++.|.|...
T Consensus        65 kgRftiSrD~s~~t~yL~m~sL~~eDTAvYYCAr~   99 (122)
T d1bz7b1          65 KGRFTISRDNPKNTLFLQMTSLRSEDTAIYYCTRG   99 (122)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeeEEEeccCCccEeEeeeeeecccCceEEEeecC
Confidence            345554432  345789999999999999999754

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=91.23  E-value=0.074  Score=27.70  Aligned_cols=32  Identities=22%  Similarity=0.391  Sum_probs=23.5

Q ss_pred             CCEEEEE--eCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          19 DRRLMET--RGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        19 ~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .|+++..  ..+...|+|.+++.+|++.|.|...
T Consensus        67 ~Rftis~D~s~~~~~L~i~sl~~eDsAvYyCAr~  100 (123)
T d1r0ah1          67 SRLTVSKDTSNNQAFLNMMTVETADTAIYYCAQS  100 (123)
T ss_dssp             GGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEEccccccceeEEcceeecccccceEEeeccc
Confidence            3455443  2345679999999999999999753

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=91.20  E-value=0.076  Score=27.45  Aligned_cols=33  Identities=12%  Similarity=0.294  Sum_probs=24.2

Q ss_pred             CCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..|+++..  ..+...|.|.+++.+|++.|.|-..
T Consensus        65 ~gR~tis~D~s~~t~yL~i~~L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          65 TDKARLTVDTSSSTAYMQFSSLTTEDSAIYYCARY   99 (118)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeeEEEEecCccceEEecccccCCCcceEEEEeee
Confidence            34555443  3345789999999999999999753

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.09  E-value=0.12  Score=25.63  Aligned_cols=26  Identities=23%  Similarity=0.369  Sum_probs=21.9

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeecCC
Q psy3272          28 NKHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus        28 ~~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      ....++|.+++..+.|.|.|.+....
T Consensus        57 pk~Gf~I~~~~~~~~g~y~C~a~~~g   82 (95)
T d1fltx_          57 SRKGFIISNATYKEIGLLTCEATVNG   82 (95)
T ss_dssp             TTTEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCCEEEeCCCcccCeEEEEEEEECC
Confidence            45668899999999999999997654

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=91.08  E-value=0.25  Score=25.99  Aligned_cols=33  Identities=18%  Similarity=0.369  Sum_probs=25.1

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      +.|+++...  .+...|+|.+++.+|++.|.|...
T Consensus        64 kgR~tis~D~s~~t~~L~~~~L~~eDtA~YYCAr~   98 (133)
T d1rzfh1          64 RGRVTISADESTRTVYLHLRGLRSDDTAVYYCASN   98 (133)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cccEEEEeccCcceeEEeeccCCCCCCEEEEeeec
Confidence            456665443  346789999999999999999654

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=91.08  E-value=0.089  Score=27.25  Aligned_cols=33  Identities=18%  Similarity=0.366  Sum_probs=24.7

Q ss_pred             CCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..|+++..  ..+...|+|.+++.+|++.|.|...
T Consensus        65 kgRftiS~D~s~nt~~L~m~~L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          65 KGRATLTVDTSTNTAYMELSSLRSEDTAFYFCARE   99 (120)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeeEEEEecCcceEEeccccccCCCcceEEEEEEc
Confidence            35555443  3456789999999999999999754

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=90.99  E-value=0.092  Score=27.21  Aligned_cols=32  Identities=19%  Similarity=0.345  Sum_probs=24.3

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .|+++...  .+...|+|.+++.+|++.|.|...
T Consensus        68 gRftiS~D~s~n~~~L~~~~L~~eDtAvYYCA~~  101 (120)
T d1dlfh_          68 GRFTISRDDSKRRVYLQMNTLRAEDTGIYYCTGI  101 (120)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ecceeecccccceeccceeeccCCCceEEEeeEe
Confidence            45655432  345789999999999999999754

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.97  E-value=0.091  Score=27.46  Aligned_cols=32  Identities=16%  Similarity=0.313  Sum_probs=24.5

Q ss_pred             CCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEe
Q psy3272          18 SDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVA   49 (115)
Q Consensus        18 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~   49 (115)
                      ..|+++..  ..+...|.|.+++.+|++.|.|..
T Consensus        64 kgRfTiS~D~s~nt~yL~m~~L~~eDTAvYYCAr   97 (126)
T d1lmka1          64 KGKATFTADTSSNIAYMQLSSLTSEDSAVYYCAR   97 (126)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ccceEEEecCCccEEEeeecccCCCcceEEEEee
Confidence            45655543  345678999999999999999964

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=90.95  E-value=0.1  Score=26.96  Aligned_cols=57  Identities=11%  Similarity=0.217  Sum_probs=35.1

Q ss_pred             EEEEEeecCCcceeEEE-EEe---c------ccCCcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeec
Q psy3272          44 NYSCVADNNLGRAKKYM-ELS---V------SVSDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~~-~v~---g------~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      .|.-.+++..+...--+ .+.   +      ....++.+..+.  +...|.|.++..+|++.|.|....
T Consensus        32 ~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~eDtAvYYCAr~~  100 (118)
T d1ct8b1          32 SYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTEDSAIYYCARYR  100 (118)
T ss_dssp             CEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCCCcceEEEEeeec
Confidence            45556666665554322 221   1      112355555543  456899999999999999997654

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.92  E-value=0.067  Score=27.59  Aligned_cols=24  Identities=33%  Similarity=0.631  Sum_probs=20.1

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .+...|+|.+++.+|++.|.|...
T Consensus        75 ~~tv~L~~~~L~~eDTAvYyCAr~   98 (116)
T d1fn4b1          75 KNQVFLKMNSLQTDDTGTYYCTRD   98 (116)
T ss_dssp             GTEEECCEESCCCCCCEEEEEEEE
T ss_pred             cchhhcceeccCCCCCEEEEEEee
Confidence            345679999999999999999653

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.90  E-value=0.24  Score=25.83  Aligned_cols=31  Identities=23%  Similarity=0.441  Sum_probs=24.2

Q ss_pred             CcEEEEEeC--CeEEEEEeccCCCCCeeeEEEe
Q psy3272          68 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVA   98 (115)
Q Consensus        68 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~   98 (115)
                      .++.+..+.  +...|.|.+++.+|++.|.|.-
T Consensus        66 gR~tiS~D~s~nt~yL~~~~L~~eDtAvYYCAR   98 (127)
T d1n0xh1          66 DRVTFTADTSANTAYMELRSLRSADTAVYYCAR   98 (127)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ccceEecccCceEEEEEEEccCCCCceEEEEEe
Confidence            356666543  4567999999999999999974

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=90.86  E-value=0.096  Score=27.04  Aligned_cols=32  Identities=25%  Similarity=0.331  Sum_probs=23.8

Q ss_pred             CCEEEEE--eCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          19 DRRLMET--RGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        19 ~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .|+.+..  ..+...|.|.+++.+|++.|.|-..
T Consensus        65 gR~tiSrD~s~nt~~L~i~~l~~eDtA~YyCAr~   98 (118)
T d1lo4h1          65 GRFTISRDIVRNILTLQMSRLRSEDTAIYYCARG   98 (118)
T ss_dssp             TTBEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeEEEeccccceeeeeccccccCCcceEEEeccc
Confidence            4555443  2345789999999999999999753

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=90.86  E-value=0.085  Score=27.52  Aligned_cols=33  Identities=27%  Similarity=0.367  Sum_probs=24.7

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..|+++...  .+...|+|.+++.+|++.|-|...
T Consensus        64 kgR~tis~D~s~~t~yLq~~sL~~eDtAvYYCAr~   98 (124)
T d1zvya1          64 KGRFTISQDKAKNMAYLRMDSVKSEDTAIYTCGAT   98 (124)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             ccccEEecccccceeeceeccccCCcceEEEEeec
Confidence            345554432  456789999999999999999764

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=90.71  E-value=0.57  Score=24.32  Aligned_cols=63  Identities=16%  Similarity=0.220  Sum_probs=40.8

Q ss_pred             CCCCCCeEEEEEeecCCcceeE-EEEE--ecc------cCCcEEEEEeC--CeEEEEEeccCCCCCeeeEEEee
Q psy3272          37 VQSTDFGNYSCVADNNLGRAKK-YMEL--SVS------VSDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVAD   99 (115)
Q Consensus        37 ~~~~d~G~y~C~~~~~~~~~~~-~~~v--~g~------~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~   99 (115)
                      ....+.+.|.-.+.+..+.... ...+  .|.      ...++.+..+.  +...|.|.++..+|++.|.|...
T Consensus        27 ~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~eDtAvYyCAr~  100 (126)
T d1etzb1          27 FSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDTSDTATYHCARR  100 (126)
T ss_dssp             SCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccccccceEEEEEe
Confidence            3455666666677766655544 2333  121      13366666653  45789999999999999999854

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=90.63  E-value=0.1  Score=26.97  Aligned_cols=33  Identities=21%  Similarity=0.360  Sum_probs=24.6

Q ss_pred             CCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..|+++..  ..+...|.|.+++.+|++.|.|...
T Consensus        65 kgR~TiS~D~s~nt~~L~~~sL~~eDTAvYYCAr~   99 (119)
T d1ncwh1          65 KSRISITRDTSKNQFFLQLNSVTTEDTATYYCAGL   99 (119)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cccceEecccccceeeccccccccCCceEEEEeEe
Confidence            34555543  2445789999999999999999753

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=90.48  E-value=0.095  Score=27.59  Aligned_cols=33  Identities=24%  Similarity=0.426  Sum_probs=24.8

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..|+++...  .+...|+|.+++++|++.|-|...
T Consensus        67 kgR~tiS~D~s~nt~~Lq~~~L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          67 KGRFTISRDDSKNTLYLQMNSLKTEDTAVYSCTTD  101 (131)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eEEEEEecccccceeecceeccccCCceEEEEecc
Confidence            345555432  456789999999999999999864

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.45  E-value=0.11  Score=27.33  Aligned_cols=33  Identities=21%  Similarity=0.381  Sum_probs=24.6

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      ..|+.+...  .+...|.|.+++.+|++.|.|...
T Consensus        64 kgR~tis~D~s~~tv~L~~~~L~~eDtAvYyCAr~   98 (130)
T d1rhhb1          64 RGRVTFTADQATSTAYMELTNLRSDDTAVYYCARD   98 (130)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeeeEEeccCCccEEEEEeeccCCCCcEEEEEEee
Confidence            346555433  345679999999999999999764

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=90.35  E-value=0.091  Score=27.51  Aligned_cols=23  Identities=26%  Similarity=0.518  Sum_probs=20.3

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEe
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVA   49 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~   49 (115)
                      .+...|+|.+++.+|++.|.|..
T Consensus        76 ~nt~yL~l~~l~~eDtAvYyCAr   98 (127)
T d3cx5j1          76 KNQFFLKLNSVTTEDTATYYCAR   98 (127)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cceeecceeccccccceEEEeee
Confidence            45678999999999999999974

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=90.34  E-value=0.11  Score=27.07  Aligned_cols=32  Identities=19%  Similarity=0.318  Sum_probs=23.9

Q ss_pred             CCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEe
Q psy3272          18 SDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVA   49 (115)
Q Consensus        18 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~   49 (115)
                      +.|+.+..  ..+...|+|.+++.+|++.|.|..
T Consensus        65 kgR~tiSrD~s~~t~yL~~~~L~~eDTA~YYCAR   98 (124)
T d2b1hh1          65 EGQVTMSADRSTNTAHLQWSSLKPSDTALYYCAR   98 (124)
T ss_dssp             TTTCEEEEETTTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             eeeEEEeecCCCcEEEEeeeccccccceEEEEee
Confidence            35555443  234578999999999999999964

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=90.29  E-value=0.55  Score=23.46  Aligned_cols=57  Identities=7%  Similarity=0.100  Sum_probs=33.3

Q ss_pred             EEEEEeecCCcceeEEEEE---------ecccCCcEEEEEeCCeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          44 NYSCVADNNLGRAKKYMEL---------SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~~~v---------~g~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .|..++.+..+.....|-.         .+.+..++..... ....|.|.....+|++.|.|.....
T Consensus        31 ~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~-~~~~l~l~~~~~~dsa~Y~Ca~~~~   96 (112)
T d1fo0b_          31 PWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRV-TDTELRLQVANMSQGRTLYCTCSAD   96 (112)
T ss_dssp             CEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEE-ETTEEEEEEESCCSCEEEEEEEESS
T ss_pred             CcEEEEeECCCCCccccceeccccccccccccccccccccc-cccEEEEecCCccCCccEEEEEecC
Confidence            4666777776665543322         1112223322222 2346888888899999999996543

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.21  E-value=0.12  Score=27.20  Aligned_cols=32  Identities=13%  Similarity=0.298  Sum_probs=23.7

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .|+++...  .+...|+|.+++.+|++.|.|-..
T Consensus        66 gR~tiS~D~s~~t~yL~~~sL~~eDtA~YYCAr~   99 (130)
T d1rzga1          66 GRVSITADESTSTAYMELSSLRSEDTAVFYCASP   99 (130)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             cceEEecccccceEEeeeeecCCCccEEEEEEEe
Confidence            45554432  345679999999999999999853

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=90.19  E-value=0.27  Score=25.49  Aligned_cols=62  Identities=15%  Similarity=0.202  Sum_probs=37.7

Q ss_pred             CCCCCeEEEEEeecCCcceeE-EEEE--ecc------cCCcEEEEEe--CCeEEEEEeccCCCCCeeeEEEee
Q psy3272          38 QSTDFGNYSCVADNNLGRAKK-YMEL--SVS------VSDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   99 (115)
Q Consensus        38 ~~~d~G~y~C~~~~~~~~~~~-~~~v--~g~------~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   99 (115)
                      ...+...|.-.+++..+.... ...+  .|.      ...++.+..+  .+...|.|.++..+|++.|.|...
T Consensus        28 s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~eDsAvYyCAr~  100 (123)
T d1r0ah1          28 SLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETADTAIYYCAQS  100 (123)
T ss_dssp             CTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecccccceEEeeccc
Confidence            334444555667666555443 2222  221      1235555554  345789999999999999999854

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.15  E-value=0.13  Score=26.81  Aligned_cols=32  Identities=13%  Similarity=0.267  Sum_probs=24.3

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          19 DRRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        19 ~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .|+.+...  .+...|.|.+++.+|++.|.|...
T Consensus        66 gR~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAR~   99 (124)
T d1yedb1          66 GKATLTADKSSSTAYMQLSSLKSEDSAVYFCTRW   99 (124)
T ss_dssp             TTEEEEEETTTTEEEEEEESCCGGGCEEEEEEEC
T ss_pred             eeEEEEccCCcceEEecccccCCCcceEEEeccc
Confidence            45555433  456789999999999999999753

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.12  E-value=0.11  Score=27.21  Aligned_cols=32  Identities=22%  Similarity=0.447  Sum_probs=24.0

Q ss_pred             CCCEEEEE--eCCeEEEEEecCCCCCCeEEEEEe
Q psy3272          18 SDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVA   49 (115)
Q Consensus        18 ~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~   49 (115)
                      ..|+++..  ..+...|.|.+++.+|++.|-|.-
T Consensus        65 kgR~tiS~D~s~nt~yL~~~~L~~eDtAvYYCAR   98 (127)
T d1n0xh1          65 QDRVTFTADTSANTAYMELRSLRSADTAVYYCAR   98 (127)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cccceEecccCceEEEEEEEccCCCCceEEEEEe
Confidence            34555543  234678999999999999999974

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=90.08  E-value=0.18  Score=26.13  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=24.4

Q ss_pred             cEEEEEe--CCeEEEEEeccCCCCCeeeEEEeec
Q psy3272          69 RRLMETR--GNKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        69 ~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      ++.+..+  .+...|.|.++..+|++.|.|....
T Consensus        69 R~tiSrD~s~nt~yL~~~~L~~eDTAvYYCAr~~  102 (121)
T d1nfdf1          69 RFTISRDDSRNSIYLQMNRLRVDDTAIYYCTRAG  102 (121)
T ss_dssp             TBCCEECTTTSEEEEEEESCCGGGCEECEEEEEE
T ss_pred             eeEEccccccceeeceecccCCCcceEEEEeccC
Confidence            4445554  3456799999999999999998654

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=90.06  E-value=0.26  Score=25.58  Aligned_cols=32  Identities=19%  Similarity=0.275  Sum_probs=24.5

Q ss_pred             CcEEEEEeC--CeEEEEEeccCCCCCeeeEEEee
Q psy3272          68 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVAD   99 (115)
Q Consensus        68 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~   99 (115)
                      .++.+..+.  +...|.|.++..+|++.|.|...
T Consensus        66 gR~tiSrD~s~~t~yL~~~~L~~eDTA~YYCAR~   99 (124)
T d2b1hh1          66 GQVTMSADRSTNTAHLQWSSLKPSDTALYYCARL   99 (124)
T ss_dssp             TTCEEEEETTTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             eeEEEeecCCCcEEEEeeeccccccceEEEEeec
Confidence            355555543  45689999999999999999654

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.00  E-value=0.58  Score=23.36  Aligned_cols=59  Identities=10%  Similarity=0.179  Sum_probs=30.3

Q ss_pred             EEEEEeecCCcceeEE-EEE--e-c------ccCCcEEEEEe--CCeEEEEEeccCCCCCeeeEEEeecCc
Q psy3272          44 NYSCVADNNLGRAKKY-MEL--S-V------SVSDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNL  102 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~-~~v--~-g------~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n~~  102 (115)
                      .|.-.+++..+...-- ..+  . |      ....++.+..+  .+...|.|.++..+|++.|.|......
T Consensus        19 y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAr~~~~   89 (103)
T d1oari_          19 YWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARMWYY   89 (103)
T ss_dssp             SEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSEEEEEEEECS
T ss_pred             CceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEEEEeEEECCC
Confidence            4555666665555431 122  1 1      22345555543  345689999999999999999865443

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=89.84  E-value=0.14  Score=26.72  Aligned_cols=31  Identities=23%  Similarity=0.415  Sum_probs=23.9

Q ss_pred             cEEEEEe--CCeEEEEEeccCCCCCeeeEEEee
Q psy3272          69 RRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   99 (115)
Q Consensus        69 ~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   99 (115)
                      ++.+..+  .+...|.|.++..+|++.|.|...
T Consensus        67 R~tis~d~s~nt~yL~l~~l~~eDtAvYyCAr~   99 (127)
T d3cx5j1          67 RLSITRDTSKNQFFLKLNSVTTEDTATYYCARS   99 (127)
T ss_dssp             TBCCEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceeecccccceeecceeccccccceEEEeeee
Confidence            4444443  356789999999999999999854

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=89.80  E-value=0.14  Score=27.05  Aligned_cols=33  Identities=21%  Similarity=0.308  Sum_probs=24.6

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          18 SDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        18 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      +.|+++...  .+...|.|.+++.+|++.|.|...
T Consensus        65 kgRfTiSrD~s~~t~yL~i~~L~~eDTAvYYCAr~   99 (135)
T d1ieha_          65 KGRFTISRDNAKNTLYLQMNSLKSEDTAVYYCAKY   99 (135)
T ss_dssp             TTTEEEEECTTTCCEEEEEESCCSSSCEEEEEEEB
T ss_pred             eEeEEEeccCCCceeEecEeeeCcccceeeEEEEe
Confidence            355655432  345679999999999999999764

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=89.69  E-value=0.13  Score=26.62  Aligned_cols=32  Identities=22%  Similarity=0.373  Sum_probs=23.9

Q ss_pred             CCEEEEE--eCCeEEEEEecCCCCCCeEEEEEee
Q psy3272          19 DRRLMET--RGNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        19 ~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .|+++..  ..+...|+|.+++.+|++.|.|...
T Consensus        66 gRftiSrD~s~~t~yLq~~~L~~eDtAvYYCAr~   99 (121)
T d2p49b1          66 GRFTISRDKGKNTVYLQMDSLKPEDTATYYCAAG   99 (121)
T ss_dssp             TTEEEECTTSTTEEEEEECSCCGGGCEEEEEEES
T ss_pred             EeEEEeecCCceEEEEEeeeccccceeEEeeecc
Confidence            4555542  2345679999999999999999864

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=89.53  E-value=0.12  Score=26.76  Aligned_cols=24  Identities=21%  Similarity=0.354  Sum_probs=20.4

Q ss_pred             CCeEEEEEecCCCCCCeEEEEEee
Q psy3272          27 GNKHTLTIKNVQSTDFGNYSCVAD   50 (115)
Q Consensus        27 ~~~~~l~i~~~~~~d~G~y~C~~~   50 (115)
                      .+...|.|.+++.+|++.|.|-..
T Consensus        78 ~nt~yL~~~~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          78 RNSIYLQMNRLRVDDTAIYYCTRA  101 (121)
T ss_dssp             TSEEEEEEESCCGGGCEECEEEEE
T ss_pred             cceeeceecccCCCcceEEEEecc
Confidence            456779999999999999999753

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=89.39  E-value=0.74  Score=23.65  Aligned_cols=57  Identities=9%  Similarity=0.138  Sum_probs=35.8

Q ss_pred             eEEEEEeecCCcceeEEE-EEe---c------ccCCcEEEEEeC--CeEEEEEeccCCCCCeeeEEEee
Q psy3272          43 GNYSCVADNNLGRAKKYM-ELS---V------SVSDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVAD   99 (115)
Q Consensus        43 G~y~C~~~~~~~~~~~~~-~v~---g------~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~   99 (115)
                      ..|...+.+..+...--+ .+.   |      ....++.+..+.  +...|.|.++..+|++.|.|...
T Consensus        31 ~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~eDTAvYYCAr~   99 (119)
T d1eapb1          31 DHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTSEDSAVYFCKRS   99 (119)
T ss_dssp             GSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             CCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccCCcceEEEEEEe
Confidence            345666766665554322 221   1      123356665543  45689999999999999999754

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=89.02  E-value=0.78  Score=23.46  Aligned_cols=59  Identities=12%  Similarity=0.197  Sum_probs=38.2

Q ss_pred             eEEEEEeecCCcceeEEE-EEe---------cccCCcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          43 GNYSCVADNNLGRAKKYM-ELS---------VSVSDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        43 G~y~C~~~~~~~~~~~~~-~v~---------g~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ..|...+++..+...--+ .+.         .....++.+..+.  +...|.|.++..+|++.|.|.....
T Consensus        30 ~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~eDtAvYYCAr~~~  100 (117)
T d1um5h1          30 SYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSEDSAVYYCARSSM  100 (117)
T ss_dssp             CCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCCcceEEEEeeccC
Confidence            356677777766554422 221         1223466666653  4567999999999999999985443

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=89.01  E-value=0.11  Score=26.70  Aligned_cols=31  Identities=23%  Similarity=0.385  Sum_probs=23.2

Q ss_pred             CCEEEEE--eCCeEEEEEecCCCCCCeEEEEEe
Q psy3272          19 DRRLMET--RGNKHTLTIKNVQSTDFGNYSCVA   49 (115)
Q Consensus        19 ~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~   49 (115)
                      .|+++..  ..+...|+|.+++.+|++.|.|..
T Consensus        66 gR~tisrD~s~~t~~L~~~sL~~eDTAvYYCAr   98 (117)
T d1b2wh1          66 DRFTISRDKSKNTLYLQMNSLRPEDTAVYYCAR   98 (117)
T ss_dssp             TTEEEECCTTTTEEEEEECSCCGGGCEEEECCE
T ss_pred             eeEEEEeccccceEEeeeccccCCcceEEEEcc
Confidence            3455442  244678999999999999999964

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.95  E-value=0.06  Score=26.89  Aligned_cols=13  Identities=23%  Similarity=0.644  Sum_probs=10.0

Q ss_pred             ceEEEECCEEeCC
Q psy3272           3 MMSWYQDTFLIEP   15 (115)
Q Consensus         3 ~v~W~~~~~~~~~   15 (115)
                      .|+|+++|..+..
T Consensus        36 ~v~W~~~g~~~~~   48 (103)
T d1i1ca1          36 RFSWFIDDVEVHT   48 (103)
T ss_dssp             EEEEEESSCEECC
T ss_pred             EEEEEECCccccC
Confidence            6789999987653

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=88.88  E-value=0.83  Score=23.61  Aligned_cols=60  Identities=25%  Similarity=0.286  Sum_probs=38.1

Q ss_pred             CeEEEEEeecCCcceeE-EEEEe--c-------ccCCcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          42 FGNYSCVADNNLGRAKK-YMELS--V-------SVSDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        42 ~G~y~C~~~~~~~~~~~-~~~v~--g-------~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ...|.-.+.+..+...- ...+.  +       ....++.+..+.  +...|.|.++..+|++.|.|.....
T Consensus        29 ~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~eDtAvYYCAr~~~  100 (124)
T d1zvya1          29 SIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSEDTAIYTCGATRK  100 (124)
T ss_dssp             TCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECSS
T ss_pred             ccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCCcceEEEEeeccc
Confidence            33456666666655543 22221  1       123466666653  5567999999999999999987543

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=88.36  E-value=0.88  Score=23.26  Aligned_cols=57  Identities=9%  Similarity=0.213  Sum_probs=35.1

Q ss_pred             eEEEEEeecCCcceeEEE-EEe---c------ccCCcEEEEEeC--CeEEEEEeccCCCCCeeeEEEee
Q psy3272          43 GNYSCVADNNLGRAKKYM-ELS---V------SVSDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVAD   99 (115)
Q Consensus        43 G~y~C~~~~~~~~~~~~~-~v~---g------~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~   99 (115)
                      ..|...+.+..+...--+ .+.   +      ....++.+..+.  +...|.|.++..+|++.|.|...
T Consensus        31 ~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~eDtAvYYCAr~   99 (117)
T d1mfah1          31 NYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTSEDSAVYYCTRG   99 (117)
T ss_dssp             GSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCCCcceEEEEecc
Confidence            345556666555554322 221   1      112355665553  45679999999999999999753

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=87.70  E-value=0.16  Score=26.19  Aligned_cols=31  Identities=19%  Similarity=0.335  Sum_probs=23.8

Q ss_pred             cEEEEEe--CCeEEEEEeccCCCCCeeeEEEee
Q psy3272          69 RRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   99 (115)
Q Consensus        69 ~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   99 (115)
                      ++.+..+  .+...|.|.++..+|++.|.|...
T Consensus        67 R~tisrD~s~~t~~L~~~sL~~eDTAvYYCAr~   99 (117)
T d1b2wh1          67 RFTISRDKSKNTLYLQMNSLRPEDTAVYYCARG   99 (117)
T ss_dssp             TEEEECCTTTTEEEEEECSCCGGGCEEEECCEE
T ss_pred             eEEEEeccccceEEeeeccccCCcceEEEEccc
Confidence            5555543  345679999999999999999754

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.60  E-value=0.84  Score=22.10  Aligned_cols=22  Identities=14%  Similarity=0.244  Sum_probs=15.9

Q ss_pred             CCCeeeEEEeecCccceeeEEE
Q psy3272          89 TDFGNYSCVADNNLGRAKKYME  110 (115)
Q Consensus        89 ~d~G~y~C~~~n~~~~~~~~~~  110 (115)
                      .+...|+|.+..........+.
T Consensus        70 ~~~~~~tC~V~h~~l~~~~~~~   91 (95)
T d1dr9a2          70 TTNHSFMCLIKYGHLRVNQTFN   91 (95)
T ss_dssp             TSCEEEEEEEEETTCCEEEEEE
T ss_pred             CccceEEEEEEecCCCCcEEEE
Confidence            4567999999988776555543

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=87.57  E-value=1.1  Score=23.41  Aligned_cols=63  Identities=21%  Similarity=0.271  Sum_probs=40.5

Q ss_pred             CCCCCeEEEEEeecCCcceeE-EEEE--ec------ccCCcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeec
Q psy3272          38 QSTDFGNYSCVADNNLGRAKK-YMEL--SV------SVSDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        38 ~~~d~G~y~C~~~~~~~~~~~-~~~v--~g------~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      ...+...|.-.+.+..+.... ...+  .+      ....++.+..+.  +...|.|.++..+|++.|.|....
T Consensus        28 ~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          28 SLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPVDTATYFCAHRR  101 (132)
T ss_dssp             CTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCcccceEEEEEEec
Confidence            334444566677776655554 2222  11      123466666643  456799999999999999998654

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.34  E-value=0.12  Score=25.81  Aligned_cols=49  Identities=20%  Similarity=0.342  Sum_probs=24.3

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCC-----eEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGN-----KHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .+.|.+++..+...  .........+     .+.|.|..-.-.....|+|.+....
T Consensus        38 ~~~W~~~~~~~~~~--~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~   91 (105)
T d1l6xa1          38 KFNWYVDGVEVHNA--KTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKA   91 (105)
T ss_dssp             EEEEEETTEEECCC--EECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTT
T ss_pred             EEEEeeCCeECCCc--EECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCC
Confidence            46799999876541  1100011111     2344443332223348999998643

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=87.33  E-value=1.1  Score=23.04  Aligned_cols=59  Identities=12%  Similarity=0.253  Sum_probs=38.0

Q ss_pred             eEEEEEeecCCcceeEEE-EEe---c------ccCCcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          43 GNYSCVADNNLGRAKKYM-ELS---V------SVSDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        43 G~y~C~~~~~~~~~~~~~-~v~---g------~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ..|...+.+..+.....+ .+.   +      ....++.+..+.  +...|.|.++..+|++.|.|.....
T Consensus        31 ~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~eDtA~YYCAr~~~  101 (120)
T d1pg7x1          31 GHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSNDSAVYYCAREDF  101 (120)
T ss_dssp             GSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECC
T ss_pred             CCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCCcceEEEeeecCC
Confidence            346667777666655432 221   1      123456665543  4567999999999999999986543

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=87.21  E-value=1.1  Score=23.17  Aligned_cols=33  Identities=24%  Similarity=0.411  Sum_probs=25.7

Q ss_pred             CcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeec
Q psy3272          68 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        68 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      .++.+..+.  +...|.|.+++.+|++.|.|....
T Consensus        65 gR~tis~D~s~~~~~L~i~~l~~eDTAvYYCAr~~   99 (126)
T d1rjca1          65 GRLTISLDNAKNTLYLQMNSLKPEDTAMYYCAADT   99 (126)
T ss_dssp             TTEEEEEEC--CEEEEEECSCCGGGCEEEEEEECC
T ss_pred             eeEEEEecCCceEEEEEEeccCcccCceeEEEeec
Confidence            356666653  456799999999999999998654

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=87.18  E-value=1.1  Score=23.00  Aligned_cols=59  Identities=19%  Similarity=0.266  Sum_probs=37.7

Q ss_pred             CeEEEEEeecCCcceeEEE-EE--ec------ccCCcEEEEEe--CCeEEEEEeccCCCCCeeeEEEeec
Q psy3272          42 FGNYSCVADNNLGRAKKYM-EL--SV------SVSDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        42 ~G~y~C~~~~~~~~~~~~~-~v--~g------~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      ...|.-.+++..+...-.+ .+  .|      ....++.+..+  .+...|.|.++..+|++.|.|....
T Consensus        32 s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~eDtAvYYCAr~~  101 (120)
T d1ai1h1          32 TNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNEDTAMYYCSREN  101 (120)
T ss_dssp             TTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeeccceeEEEEEecC
Confidence            4455667777766555422 22  12      11235666664  3457899999999999999998543

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=86.80  E-value=1.2  Score=23.09  Aligned_cols=34  Identities=24%  Similarity=0.422  Sum_probs=26.4

Q ss_pred             CcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          68 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        68 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .++.+..+.  +...|.|.++..+|++.|.|.....
T Consensus        66 gR~Tis~D~s~~t~yL~~~~L~~eDTA~YYCAr~~~  101 (127)
T d2fb4h1          66 GRFTISRNDSKNTLFLQMDSLRPEDTGVYFCARDGG  101 (127)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             ceEEEeccCCccEEEeeeeeeeecceeEEEEEEecC
Confidence            456666653  5578999999999999999986543

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=86.49  E-value=1.2  Score=22.73  Aligned_cols=57  Identities=9%  Similarity=0.251  Sum_probs=35.6

Q ss_pred             eEEEEEeecCCcceeEEE-EEe---c------ccCCcEEEEEeC--CeEEEEEeccCCCCCeeeEEEee
Q psy3272          43 GNYSCVADNNLGRAKKYM-ELS---V------SVSDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVAD   99 (115)
Q Consensus        43 G~y~C~~~~~~~~~~~~~-~v~---g------~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~   99 (115)
                      ..+...+.+..+...--+ .+.   +      ....++.+..+.  +...|.|.++..+|++.|.|...
T Consensus        31 ~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~~eDtAvYYCAr~   99 (116)
T d1mjuh1          31 NYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSDDSAVYYCANK   99 (116)
T ss_dssp             GSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccCCCCceEEEEccc
Confidence            345566666665554322 221   1      123356666553  45689999999999999999753

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=85.89  E-value=1.3  Score=22.64  Aligned_cols=56  Identities=11%  Similarity=0.163  Sum_probs=35.7

Q ss_pred             EEEEEeecCCcceeEEE-EEe---c------ccCCcEEEEEe--CCeEEEEEeccCCCCCeeeEEEee
Q psy3272          44 NYSCVADNNLGRAKKYM-ELS---V------SVSDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVAD   99 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~~-~v~---g------~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   99 (115)
                      .|...+.+..+...--+ .+.   +      .-..++.+..+  .+...|.|.++..+|++.|.|...
T Consensus        32 y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAr~   99 (118)
T d2jelh1          32 YAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTSEDSAIYYCARV   99 (118)
T ss_dssp             SEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccccCcceeeeEEEe
Confidence            45666777666654422 221   1      11235666654  345679999999999999999653

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=84.61  E-value=1.5  Score=22.33  Aligned_cols=57  Identities=12%  Similarity=0.206  Sum_probs=36.0

Q ss_pred             EEEEEeecCCcceeEE-EEEe---c------ccCCcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeec
Q psy3272          44 NYSCVADNNLGRAKKY-MELS---V------SVSDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        44 ~y~C~~~~~~~~~~~~-~~v~---g------~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      .|.-.+.+..+...-- ..+.   +      ....++.+..+.  ....|.|.++..+|++.|.|....
T Consensus        32 y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~eDTAvYYCAr~~  100 (117)
T d1jnhb1          32 YWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSEDSAVYSCSRGR  100 (117)
T ss_dssp             SEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCCcceEEEEeecC
Confidence            4555666666555442 2221   1      112366666653  456799999999999999997643

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=84.50  E-value=1.6  Score=22.35  Aligned_cols=34  Identities=18%  Similarity=0.294  Sum_probs=26.4

Q ss_pred             CcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          68 DRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        68 ~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      .++.+..+.  +...|.|.++..+|++.|.|.....
T Consensus        64 gR~tiS~D~s~~~~~L~i~~L~~eDtA~YYCAr~~~   99 (119)
T d1kxvc_          64 GRFTISQGNAKNTAYLQMDSLKPDDTAMYYCKPSLR   99 (119)
T ss_dssp             TTEEEEECSSTTEEEEEECSCCGGGCEEEEEEEEES
T ss_pred             cceEEecccCCcceecccccCCcCCcceEeeeeccc
Confidence            466666653  4568999999999999999986543

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.32  E-value=0.52  Score=23.20  Aligned_cols=49  Identities=16%  Similarity=0.208  Sum_probs=23.4

Q ss_pred             ceEEEECCEEeCCCCCCCEEEEEeCC-----eEEEEEecCCCCCCeEEEEEeecCC
Q psy3272           3 MMSWYQDTFLIEPSVSDRRLMETRGN-----KHTLTIKNVQSTDFGNYSCVADNNL   53 (115)
Q Consensus         3 ~v~W~~~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~y~C~~~~~~   53 (115)
                      .+.|++++.....  ..........+     .+.|.|..-.......|.|.+....
T Consensus        36 ~~~W~~~~~~~~~--~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~   89 (103)
T d1fp5a1          36 NLTWSRASGKPVN--HSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPH   89 (103)
T ss_dssp             EEEEEETTCCCCC--CCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             EEEEcCCCceecc--cEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECC
Confidence            4567888765543  21111111221     2334333222222458999998643

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=84.14  E-value=1.4  Score=21.67  Aligned_cols=68  Identities=15%  Similarity=0.195  Sum_probs=34.8

Q ss_pred             CCCCCCeEEEEEeecCCcceeE-EEEEecccCCcEE-----EEEeCCeEEEEEeccCCCCCe-eeEEEeecCccc
Q psy3272          37 VQSTDFGNYSCVADNNLGRAKK-YMELSVSVSDRRL-----METRGNKHTLTIKNVQSTDFG-NYSCVADNNLGR  104 (115)
Q Consensus        37 ~~~~d~G~y~C~~~~~~~~~~~-~~~v~g~~~~~~~-----~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~~~  104 (115)
                      +.......+.|.+......... ....+|.......     ...++.........+..++.| .|+|.+.-....
T Consensus        21 ~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w~~~ytC~V~H~s~~   95 (107)
T d1hxmb2          21 TKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSLDKEHRCIVRHENNK   95 (107)
T ss_dssp             GGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGGGSCEEEEEEETTSG
T ss_pred             HccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccCCCeEEEEEEECCCC
Confidence            3445667899999875544433 4444443221110     111222223333344455544 799999875444

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=83.80  E-value=1.8  Score=22.61  Aligned_cols=59  Identities=17%  Similarity=0.255  Sum_probs=37.4

Q ss_pred             eEEEEEeecCCcceeEEE-EEe---c------ccCCcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          43 GNYSCVADNNLGRAKKYM-ELS---V------SVSDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        43 G~y~C~~~~~~~~~~~~~-~v~---g------~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      +.|.-.+++..+...--+ .+.   |      .-..++.+..+.  ....|.|.++..+|++.|.|.....
T Consensus        31 ~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~eDTAvYYCAr~~~  101 (135)
T d1ieha_          31 SYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSEDTAVYYCAKYSG  101 (135)
T ss_dssp             TSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSSSCEEEEEEEBSS
T ss_pred             CCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcccceeeEEEEecC
Confidence            345666666655554422 221   1      113356666653  4567999999999999999987643

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=83.11  E-value=1.9  Score=22.17  Aligned_cols=34  Identities=15%  Similarity=0.293  Sum_probs=26.1

Q ss_pred             CCcEEEEEeC--CeEEEEEeccCCCCCeeeEEEeec
Q psy3272          67 SDRRLMETRG--NKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        67 ~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      ..++.+..+.  +...|.|.++..+|++.|.|....
T Consensus        66 kgR~tiS~D~s~ntvyL~~~~L~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          66 RGRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARDP  101 (122)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEET
T ss_pred             eEeeEEeccCCcceeeecccccCCCcceEEEEeecC
Confidence            3466666653  456799999999999999998754

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=82.36  E-value=2  Score=22.01  Aligned_cols=32  Identities=22%  Similarity=0.384  Sum_probs=24.8

Q ss_pred             cEEEEEe--CCeEEEEEeccCCCCCeeeEEEeec
Q psy3272          69 RRLMETR--GNKHTLTIKNVQSTDFGNYSCVADN  100 (115)
Q Consensus        69 ~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n  100 (115)
                      ++.+..+  .+...|.|.++..+|++.|.|....
T Consensus        67 RftiSrD~s~~t~yLq~~~L~~eDtAvYYCAr~~  100 (121)
T d2p49b1          67 RFTISRDKGKNTVYLQMDSLKPEDTATYYCAAGG  100 (121)
T ss_dssp             TEEEECTTSTTEEEEEECSCCGGGCEEEEEEESS
T ss_pred             eEEEeecCCceEEEEEeeeccccceeEEeeeccC
Confidence            5566554  3456799999999999999998753

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=82.26  E-value=2  Score=21.92  Aligned_cols=33  Identities=24%  Similarity=0.316  Sum_probs=25.3

Q ss_pred             cEEEEEeC--CeEEEEEeccCCCCCeeeEEEeecC
Q psy3272          69 RRLMETRG--NKHTLTIKNVQSTDFGNYSCVADNN  101 (115)
Q Consensus        69 ~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~  101 (115)
                      ++.+..+.  +...|.|.++..+|++.|.|.....
T Consensus        66 R~tiSrD~s~nt~~L~i~~l~~eDtA~YyCAr~~~  100 (118)
T d1lo4h1          66 RFTISRDIVRNILTLQMSRLRSEDTAIYYCARGTS  100 (118)
T ss_dssp             TBEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             eEEEeccccceeeeeccccccCCcceEEEecccCC
Confidence            55565543  4568999999999999999986544

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=81.32  E-value=2.3  Score=21.96  Aligned_cols=56  Identities=11%  Similarity=0.222  Sum_probs=35.7

Q ss_pred             eEEEEEeecCCcceeEEE-EEe---c------ccCCcEEEEEe--CCeEEEEEeccCCCCCeeeEEEe
Q psy3272          43 GNYSCVADNNLGRAKKYM-ELS---V------SVSDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVA   98 (115)
Q Consensus        43 G~y~C~~~~~~~~~~~~~-~v~---g------~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~   98 (115)
                      ..|.-.+.+..+...--+ .+.   +      ....++.+..+  .+...|.|.++..+|++.|.|..
T Consensus        30 ~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~eDTAvYYCAr   97 (126)
T d1lmka1          30 NYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTSEDSAVYYCAR   97 (126)
T ss_dssp             TEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCCCcceEEEEee
Confidence            345555666665554322 221   1      12346666655  35678999999999999999975