Psyllid ID: psy327

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSGPGLRPQRPRKSSKAAVTAGPEERGESPSR
Secondary Structure (PSIPRED)
cEEEEccccccccccccccccccccccccccccEEEccEEccHHHHHHHcccccccccccccccccEEEEccccccccccccccEEEcccccccccccEEcccccccccccccEEcccEEEEcccccccccccccccccccccccccccEEEcEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccccccEEEEccHHHEEcEEEEEccccEEccHcHHHHHccHHHHccHHEEEccccccccccccEEEEEccccEEEcccccccccccEEEHHccccccccccccccccEEEcHHHcccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
msvfasragpnscwhpgcftcsVCNELLVDLIYFyrgdklycgrhhaetlkprcsacdevrvqvgghrtrdlninyfsslpagqmshegqhwhatdscfccatcslsllgrpflpragVIFCSiacskgepptpsdssgpglrpqrprksskaavtagpeergespsr
Flexible Loop (DISEMBL)
msvfasragpnscwhpgCFTCSVCNELLVDLIYFYRGDKLYCGRHHaetlkprcsacDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKgepptpsdssgpglrpqrprksskaavtagpeergespsr
Low Complexity Region (SEG)
MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSGPGLRPQRPRKSSKAAVTAGPEERGESPSR
Disordered region (IsUnstruct)
**********NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIAC******************************************
Disordered Region (DISOPRED)
MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEP*************************************
Disordered Region (DISEMBL)
**********NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSK****************************************
Disordered Region (DISPRO)
MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKG***************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSGPGLRPQRPRKSSKAAVTAGPEERGESPSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
Q174I2	916	Protein prickle OS=Aedes	N/A	N/A	0.880	0.161	0.560	8e-50
Q9U1I1	785	Protein espinas OS=Drosop	yes	N/A	0.970	0.207	0.519	6e-49
A1Z6W3	1299	Protein prickle OS=Drosop	no	N/A	0.845	0.109	0.535	7e-49
Q292U5	795	Protein espinas OS=Drosop	yes	N/A	0.970	0.205	0.514	8e-49
Q292U2	1353	Protein prickle OS=Drosop	no	N/A	0.845	0.104	0.529	3e-48
Q7QJT4	923	Protein prickle OS=Anophe	yes	N/A	0.809	0.147	0.558	4e-48
Q7Z3G6	844	Prickle-like protein 2 OS	yes	N/A	0.988	0.196	0.468	6e-45
Q80Y24	845	Prickle-like protein 2 OS	yes	N/A	0.916	0.182	0.487	3e-44
Q28FG2	833	Prickle-like protein 1 OS	no	N/A	0.851	0.171	0.446	2e-39
Q90WV2	832	Prickle-like protein 1-B	N/A	N/A	0.851	0.171	0.440	7e-39

>sp|Q174I2|PRIC1_AEDAE Protein prickle OS=Aedes aegypti GN=pk PE=3 SV=1

 Score =  196 bits (497), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 107/191 (56%), Positives = 119/191 (62%), Gaps = 43/191 (22%)

Query: 1   MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV 60
           M V+ASR  P +CWHP CF CSVC ELLVDLIYF+R  +LYCGRHHAETLKPRCSACDE+
Sbjct: 288 MGVYASRFDPGTCWHPACFVCSVCKELLVDLIYFHREARLYCGRHHAETLKPRCSACDEI 347

Query: 61  RV------------------------QVGGHR--TRD-----------LNINY--FSSLP 81
            +                        Q+GG R   RD           +   Y  F S P
Sbjct: 348 ILADECTEAEGRAWHIKHFACFECDKQLGGQRYIMRDGKPYCLHCFDAMFAEYCDFCSEP 407

Query: 82  ----AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDS 137
                GQMSH+GQHWHATDSCF C+TC  SLLGRPFLPR G I+CSIACSKGEPPTPSD 
Sbjct: 408 IGVDQGQMSHDGQHWHATDSCFACSTCRCSLLGRPFLPRRGEIYCSIACSKGEPPTPSDG 467

Query: 138 SGPGLRPQRPR 148
           S P + P R R
Sbjct: 468 SVPTVLPSRTR 478

Acts in a planar cell polarity (PCP) complex; polarization along the apical/basal axis of epithelial cells. PCP signaling in the wing disk requires the receptor fz and the cytoplasmic proteins dsh and pk. These act in a feedback loop leading to activation of the jnk cascade and subsequent polarized arrangement of hairs and bristles. Dgo and pk compete with one another for dsh binding, thereby modulating fz dsh activity and ensuring tight control over fz PCP signaling. Vang, stan and pk function together to regulate the establishment of tissue polarity in the adult eye.
Aedes aegypti (taxid: 7159)

>sp|Q9U1I1|ESN_DROME Protein espinas OS=Drosophila melanogaster GN=esn PE=2 SV=1

 Score =  192 bits (489), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 108/208 (51%), Positives = 120/208 (57%), Gaps = 45/208 (21%)

Query: 1   MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV 60
           + VFA R G   CWHPGCF CSVC ELLVDLIYF R   LYCGRHHAET KPRCSACDE+
Sbjct: 256 IVVFAQRLGAQLCWHPGCFVCSVCKELLVDLIYFQRDGNLYCGRHHAETQKPRCSACDEI 315

Query: 61  ------------------------RVQVGGHRT-----RDLNINYFSSLPA--------- 82
                                     Q+GG R      +   +  F ++ A         
Sbjct: 316 IFSDECTEAEGRTWHMKHFACQECEHQLGGQRYIMREGKPYCLACFDTMFAEYCDYCGEV 375

Query: 83  -----GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSD- 136
                GQMSH+GQHWHATD CF C TC  SLLGRPFLPR G I+CSIACSKGEPPTPSD 
Sbjct: 376 IGVDQGQMSHDGQHWHATDQCFSCCTCRCSLLGRPFLPRRGTIYCSIACSKGEPPTPSDT 435

Query: 137 SSGPGLRPQRPRKSSKAAVTAGPEERGE 164
           SSGP LRP   R S+ + +   P   GE
Sbjct: 436 SSGPQLRPTH-RASTSSQIAKSPRRGGE 462

Drosophila melanogaster (taxid: 7227)

>sp|A1Z6W3|PRIC1_DROME Protein prickle OS=Drosophila melanogaster GN=pk PE=1 SV=1

 Score =  192 bits (489), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 99/185 (53%), Positives = 117/185 (63%), Gaps = 43/185 (23%)

Query: 1   MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV 60
           ++VFA+R GPN+ WHP CF CSVC ELLVDLIYF+R  ++YCGRHHAETLKPRCSACDE+
Sbjct: 636 IAVFATRLGPNASWHPACFACSVCRELLVDLIYFHRDGRMYCGRHHAETLKPRCSACDEI 695

Query: 61  RV------------------------QVGGHRT-----RDLNINYFSSLPA--------- 82
            +                        Q+GG R      +   ++ F ++ A         
Sbjct: 696 ILADECTEAEGRAWHMNHFACHECDKQLGGQRYIMREGKPYCLHCFDAMFAEYCDYCGEA 755

Query: 83  -----GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDS 137
                GQMSH+GQHWHATD CF C TC  SLLGR FLPR G I+CSIACSKGEPPTPSDS
Sbjct: 756 IGVDQGQMSHDGQHWHATDECFSCNTCRCSLLGRAFLPRRGAIYCSIACSKGEPPTPSDS 815

Query: 138 SGPGL 142
           SG G+
Sbjct: 816 SGTGM 820

Acts in a planar cell polarity (PCP) complex; polarization along the apical/basal axis of epithelial cells. Correct expression of the alternative isoforms is required for PCP signaling in imaginal disks. PCP signaling in the wing disk requires the receptor fz and the cytoplasmic proteins dsh and pk. These act in a feedback loop leading to activation of the jnk cascade and subsequent polarized arrangement of hairs and bristles. Dgo and pk compete with one another for dsh binding, thereby modulating fz dsh activity and ensuring tight control over fz PCP signaling. Vang, stan and pk function together to regulate the establishment of tissue polarity in the adult eye.

Drosophila melanogaster (taxid: 7227)

>sp|Q292U5|ESN_DROPS Protein espinas OS=Drosophila pseudoobscura pseudoobscura GN=esn PE=3 SV=1

 Score =  192 bits (488), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 107/208 (51%), Positives = 120/208 (57%), Gaps = 45/208 (21%)

Query: 1   MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV 60
           + VFA R G   CWHPGCF CSVC ELLVDLIYF R   LYCGRHHAET KPRCSACDE+
Sbjct: 256 IVVFAQRLGAQLCWHPGCFVCSVCKELLVDLIYFQRDGNLYCGRHHAETQKPRCSACDEI 315

Query: 61  ------------------------RVQVGGHRT-----RDLNINYFSSLPA--------- 82
                                     Q+GG R      +   +  F ++ A         
Sbjct: 316 IFSDECTEAEGRTWHMKHFACQECEHQLGGQRYIMREGKPYCLGCFDTMFAEYCDYCGEV 375

Query: 83  -----GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSD- 136
                GQMSH+GQHWHATD CF C TC  SLLGRPFLPR G I+CSIACSKGEPPTPSD 
Sbjct: 376 IGVDQGQMSHDGQHWHATDQCFSCCTCRCSLLGRPFLPRRGTIYCSIACSKGEPPTPSDT 435

Query: 137 SSGPGLRPQRPRKSSKAAVTAGPEERGE 164
           SSGP LRP   R S+ + +   P   G+
Sbjct: 436 SSGPQLRPTH-RASTSSQIARSPRRSGD 462

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q292U2|PRIC1_DROPS Protein prickle OS=Drosophila pseudoobscura pseudoobscura GN=pk PE=3 SV=3

 Score =  190 bits (483), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 98/185 (52%), Positives = 117/185 (63%), Gaps = 43/185 (23%)

Query: 1   MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV 60
           ++VFA+R GPN+ WHP CFTC +C ELLVDLIYF+R  ++YCGRHHAETLKPRCSACDE+
Sbjct: 669 IAVFATRLGPNASWHPACFTCCICRELLVDLIYFHRDGRMYCGRHHAETLKPRCSACDEI 728

Query: 61  RV------------------------QVGGHRT-----RDLNINYFSSLPA--------- 82
            +                        Q+GG R      +   ++ F ++ A         
Sbjct: 729 ILADECTEAEGRAWHMNHFACHECDKQLGGQRYIMREGKPYCLHCFDAMFAEYCDYCGEA 788

Query: 83  -----GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDS 137
                GQMSH+GQHWHATD CF C TC  SLLGR FLPR G I+CSIACSKGEPPTPSDS
Sbjct: 789 IGVDQGQMSHDGQHWHATDECFSCNTCRCSLLGRAFLPRRGAIYCSIACSKGEPPTPSDS 848

Query: 138 SGPGL 142
           SG G+
Sbjct: 849 SGTGM 853

Acts in a planar cell polarity (PCP) complex; polarization along the apical/basal axis of epithelial cells. PCP signaling in the wing disk requires the receptor fz and the cytoplasmic proteins dsh and pk. These act in a feedback loop leading to activation of the jnk cascade and subsequent polarized arrangement of hairs and bristles. Dgo and pk compete with one another for dsh binding, thereby modulating fz dsh activity and ensuring tight control over fz PCP signaling. Vang, stan and pk function together to regulate the establishment of tissue polarity in the adult eye.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q7QJT4|PRIC1_ANOGA Protein prickle OS=Anopheles gambiae GN=pk PE=3 SV=4

 Score =  190 bits (482), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 100/179 (55%), Positives = 114/179 (63%), Gaps = 43/179 (24%)

Query: 1   MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV 60
           M VFASR  PN+CWHP CF C VC ELLVDLIYF+R ++LYCGRHHAETLKPRCSACDE+
Sbjct: 396 MMVFASRFEPNTCWHPACFACCVCKELLVDLIYFHRENRLYCGRHHAETLKPRCSACDEI 455

Query: 61  RV------------------------QVGGHR--TRDLN---INYFSSLPA--------- 82
            +                        Q+GG R   RD     ++ F ++ A         
Sbjct: 456 ILADECTEAEGRAWHIKHFACFECDKQLGGQRYIMRDGKPYCLHCFDAMFAEYCDYCSEP 515

Query: 83  -----GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSD 136
                GQMSH+GQHWHATD CF C+TC  SLLGRPFLPR G I+CSIACSKGEPPTPSD
Sbjct: 516 IGVDQGQMSHDGQHWHATDQCFACSTCRCSLLGRPFLPRRGEIYCSIACSKGEPPTPSD 574

Acts in a planar cell polarity (PCP) complex; polarization along the apical/basal axis of epithelial cells. PCP signaling in the wing disk requires the receptor fz and the cytoplasmic proteins dsh and pk. These act in a feedback loop leading to activation of the jnk cascade and subsequent polarized arrangement of hairs and bristles. Dgo and pk compete with one another for dsh binding, thereby modulating fz dsh activity and ensuring tight control over fz PCP signaling. Vang, stan and pk function together to regulate the establishment of tissue polarity in the adult eye.

Anopheles gambiae (taxid: 7165)

>sp|Q7Z3G6|PRIC2_HUMAN Prickle-like protein 2 OS=Homo sapiens GN=PRICKLE2 PE=1 SV=2

 Score =  179 bits (455), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 98/209 (46%), Positives = 120/209 (57%), Gaps = 43/209 (20%)

Query: 1   MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV 60
           ++VFASRAG   CWHP CF C+VCNELLVDLIYFY+  K+YCGRHHAE LKPRC+ACDE+
Sbjct: 142 IAVFASRAGHGVCWHPPCFVCTVCNELLVDLIYFYQDGKIYCGRHHAECLKPRCAACDEI 201

Query: 61  ------------------------RVQVGGHRT-----RDLNINYFSSLPA--------- 82
                                      +GG R      R    + F SL A         
Sbjct: 202 IFADECTEAEGRHWHMKHFCCFECETVLGGQRYIMKEGRPYCCHCFESLYAEYCDTCAQH 261

Query: 83  -----GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDS 137
                GQM+++GQHWHAT++CFCCA C  SLLGRPFLP+ G IFCS ACS GE P  SDS
Sbjct: 262 IGIDQGQMTYDGQHWHATETCFCCAHCKKSLLGRPFLPKQGQIFCSRACSAGEDPNGSDS 321

Query: 138 SGPGLRPQRPRKSSKAAVTAGPEERGESP 166
           S    +  R ++S ++A     + + E P
Sbjct: 322 SDSAFQNARAKESRRSAKIGKNKGKTEEP 350

Homo sapiens (taxid: 9606)

>sp|Q80Y24|PRIC2_MOUSE Prickle-like protein 2 OS=Mus musculus GN=Prickle2 PE=1 SV=3

 Score =  177 bits (449), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 96/197 (48%), Positives = 116/197 (58%), Gaps = 43/197 (21%)

Query: 1   MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV 60
           ++VFASRAG   CWHP CF C+VCNELLVDLIYFY+  K+YCGRHHAE LKPRC+ACDE+
Sbjct: 142 IAVFASRAGHGICWHPPCFVCTVCNELLVDLIYFYQDGKIYCGRHHAECLKPRCAACDEI 201

Query: 61  ------------------------RVQVGGHRT-----RDLNINYFSSLPA--------- 82
                                      +GG R      R    + F SL A         
Sbjct: 202 IFADECTEAEGRHWHMRHFCCFECETVLGGQRYIMKEGRPYCCHCFESLYAEYCDTCAQH 261

Query: 83  -----GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDS 137
                GQM+++GQHWHAT++CFCCA C  SLLGRPFLP+ G IFCS ACS GE P  SDS
Sbjct: 262 IGIDQGQMTYDGQHWHATETCFCCAHCKKSLLGRPFLPKQGQIFCSRACSAGEDPNGSDS 321

Query: 138 SGPGLRPQRPRKSSKAA 154
           S    +  R ++S ++A
Sbjct: 322 SDSAFQNARAKESRRSA 338

Mus musculus (taxid: 10090)

>sp|Q28FG2|PRIC1_XENTR Prickle-like protein 1 OS=Xenopus tropicalis GN=prickle1 PE=2 SV=1

 Score =  161 bits (408), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 83/186 (44%), Positives = 104/186 (55%), Gaps = 43/186 (23%)

Query: 1   MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV 60
           +++F SRAGP  CWHP CF CS CNELLVDLIYFY+  K++CGRHHAE LKPRCSACDE+
Sbjct: 138 IAIFVSRAGPGVCWHPSCFVCSTCNELLVDLIYFYQDGKIHCGRHHAELLKPRCSACDEI 197

Query: 61  RV--QVGGHRTRDLNINYFS---------------------------------------- 78
               +      R  ++N+FS                                        
Sbjct: 198 IFADECTEAEGRHWHMNHFSCYECETVLGGQRYIMKDGRPFCCGCFESHYAEYCESCGEH 257

Query: 79  -SLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDS 137
             +   QM+++GQHWHAT++CF CA C +SLLG PFLP+ G I+CS ACS GE    SDS
Sbjct: 258 IGVDHAQMTYDGQHWHATETCFSCAQCKVSLLGCPFLPKKGRIYCSKACSLGEDVHASDS 317

Query: 138 SGPGLR 143
           S    +
Sbjct: 318 SDSAFQ 323

Acts in a planar cell polarity (PCP) complex; polarization along the apical/basal axis of epithelial cells. Regulates the polarized assembly of fibronectrin on the surface of the mesoderm during gastrulation. Essential for gastrulation cell movements, cooperating with dvl2/dsh to activate jnk. Acts together with tes to control axial elongation.

Xenopus tropicalis (taxid: 8364)

>sp|Q90WV2|PRI1B_XENLA Prickle-like protein 1-B OS=Xenopus laevis GN=prickle1-b PE=2 SV=2

 Score =  159 bits (402), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 82/186 (44%), Positives = 103/186 (55%), Gaps = 43/186 (23%)

Query: 1   MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV 60
           +++F SRAGP  CWHP CF CS CNELLVDLIYFY+  K++CGRHHAE LKPRCSACDE+
Sbjct: 138 IAIFVSRAGPGVCWHPSCFVCSTCNELLVDLIYFYQDGKIHCGRHHAELLKPRCSACDEI 197

Query: 61  RV--QVGGHRTRDLNINYF----------------------------------------- 77
               +      R  ++N+F                                         
Sbjct: 198 IFADECTEAEGRHWHMNHFCCYECETVLGGQRYIMKDGRPFCCGCFESHYAEYCESCGDH 257

Query: 78  SSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDS 137
             +   QM+++GQHWHAT++CF CA C +SLLG PFLP+ G I+CS ACS GE    SDS
Sbjct: 258 IGVDHAQMTYDGQHWHATETCFSCAQCKVSLLGCPFLPKKGRIYCSKACSLGEDVHASDS 317

Query: 138 SGPGLR 143
           S    +
Sbjct: 318 SDSAFQ 323

Acts in a planar cell polarity (PCP) complex; polarization along the apical/basal axis of epithelial cells. Regulates the polarized assembly of fibronectrin on the surface of the mesoderm during gastrulation. Essential for gastrulation cell movements, cooperating with dvl2/dsh to activate jnk. Acts together with tes to control axial elongation.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
242007675	672	LIM domain only protein, putative [Pedic	0.880	0.220	0.581	2e-52
270010437	657	hypothetical protein TcasGA2_TC009830 [T	0.827	0.211	0.587	4e-51
157114515	916	prickle [Aedes aegypti] gi|122094543|sp|	0.880	0.161	0.560	4e-48
195430270	779	GK21790 [Drosophila willistoni] gi|19415	0.976	0.210	0.516	4e-48
442622661	1134	espinas, isoform C [Drosophila melanogas	0.970	0.143	0.519	1e-47
195120295	837	GI19485 [Drosophila mojavensis] gi|19390	0.994	0.199	0.504	2e-47
195474329	1308	GE19116 [Drosophila yakuba] gi|194175545	0.845	0.108	0.535	2e-47
17933748	785	espinas, isoform B [Drosophila melanogas	0.970	0.207	0.519	3e-47
442622663	851	espinas, isoform D [Drosophila melanogas	0.970	0.191	0.519	3e-47
24586188	1299	prickle, isoform C [Drosophila melanogas	0.845	0.109	0.535	3e-47

>gi|242007675|ref|XP_002424655.1| LIM domain only protein, putative [Pediculus humanus corporis] gi|212508129|gb|EEB11917.1| LIM domain only protein, putative [Pediculus humanus corporis]

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/191 (58%), Positives = 124/191 (64%), Gaps = 43/191 (22%)

Query: 1   MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV 60
           MSVFASRAGPN+CWHPGCF+C +C ELLVDLIYFY+  KLYCGRHHAETLKPRCSACDE+
Sbjct: 93  MSVFASRAGPNTCWHPGCFSCHICKELLVDLIYFYKEGKLYCGRHHAETLKPRCSACDEI 152

Query: 61  RV------------------------QVGGHRT-----RDLNINYFSSLPA--------- 82
            +                        Q+GG R      R   ++ F ++ A         
Sbjct: 153 ILADECTEAEGRAWHMKHFACLECDRQLGGQRYIMREGRPYCLHCFDAMFAEYCDSCGEP 212

Query: 83  -----GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDS 137
                GQMSHEGQHWHAT+ CFCC TC  SLLGRPFLPR G IFCSIACSKGEPPTPSDS
Sbjct: 213 IGVDQGQMSHEGQHWHATECCFCCHTCRASLLGRPFLPRRGSIFCSIACSKGEPPTPSDS 272

Query: 138 SGPGLRPQRPR 148
           SGP     RP+
Sbjct: 273 SGPRSLRARPK 283

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270010437|gb|EFA06885.1| hypothetical protein TcasGA2_TC009830 [Tribolium castaneum]

 Score =  205 bits (522), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 107/182 (58%), Positives = 119/182 (65%), Gaps = 43/182 (23%)

Query: 3   VFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRV 62
           VFASRAGPN+CWHP CFTC+VC ELLVDLIYFY+  +LYCGRHHAET+KPRCSACDE+ +
Sbjct: 167 VFASRAGPNTCWHPACFTCTVCRELLVDLIYFYKEGRLYCGRHHAETIKPRCSACDEIIL 226

Query: 63  ------------------------QVGGHR--TRD-----------LNINYFSS------ 79
                                   Q+GG R   RD           +   Y  S      
Sbjct: 227 ADECTEAEGRAWHMKHFACSECERQLGGQRYIMRDGRPYCLHCFDAMFAEYCDSCGEPIG 286

Query: 80  LPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSG 139
           +  GQMSHEGQHWHAT+ CFCC TC  SLLGRPFLPR G I+CSIACSKGEPPTPSDSSG
Sbjct: 287 VDQGQMSHEGQHWHATELCFCCHTCHTSLLGRPFLPRRGAIYCSIACSKGEPPTPSDSSG 346

Query: 140 PG 141
           PG
Sbjct: 347 PG 348

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157114515|ref|XP_001652308.1| prickle [Aedes aegypti] gi|122094543|sp|Q174I2.1|PRIC1_AEDAE RecName: Full=Protein prickle gi|108877251|gb|EAT41476.1| AAEL006891-PA [Aedes aegypti]

 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 107/191 (56%), Positives = 119/191 (62%), Gaps = 43/191 (22%)

Query: 1   MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV 60
           M V+ASR  P +CWHP CF CSVC ELLVDLIYF+R  +LYCGRHHAETLKPRCSACDE+
Sbjct: 288 MGVYASRFDPGTCWHPACFVCSVCKELLVDLIYFHREARLYCGRHHAETLKPRCSACDEI 347

Query: 61  RV------------------------QVGGHR--TRD-----------LNINY--FSSLP 81
            +                        Q+GG R   RD           +   Y  F S P
Sbjct: 348 ILADECTEAEGRAWHIKHFACFECDKQLGGQRYIMRDGKPYCLHCFDAMFAEYCDFCSEP 407

Query: 82  ----AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDS 137
                GQMSH+GQHWHATDSCF C+TC  SLLGRPFLPR G I+CSIACSKGEPPTPSD 
Sbjct: 408 IGVDQGQMSHDGQHWHATDSCFACSTCRCSLLGRPFLPRRGEIYCSIACSKGEPPTPSDG 467

Query: 138 SGPGLRPQRPR 148
           S P + P R R
Sbjct: 468 SVPTVLPSRTR 478

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195430270|ref|XP_002063179.1| GK21790 [Drosophila willistoni] gi|194159264|gb|EDW74165.1| GK21790 [Drosophila willistoni]

 Score =  195 bits (496), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 108/209 (51%), Positives = 122/209 (58%), Gaps = 45/209 (21%)

Query: 1   MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV 60
           + VFA R G   CWHPGCF CSVC ELLVDLIYF R   LYCGRHHAET KPRCS+CDE+
Sbjct: 259 IVVFAQRLGAQVCWHPGCFVCSVCKELLVDLIYFQRDGNLYCGRHHAETQKPRCSSCDEI 318

Query: 61  ------------------------RVQVGGHR-----TRDLNINYFSSLPA--------- 82
                                     Q+GG R     ++   +  F ++ A         
Sbjct: 319 IFSDECTEAEGHTWHMKHFACQECEHQLGGQRYIMRESKPYCLACFDTMFAEYCDYCGEV 378

Query: 83  -----GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSD- 136
                GQMSH+GQHWHATD CF C TC  SLLGRPFLPR G I+CSIACSKGEPPTPSD 
Sbjct: 379 IGVDQGQMSHDGQHWHATDQCFSCCTCRCSLLGRPFLPRRGTIYCSIACSKGEPPTPSDT 438

Query: 137 SSGPGLRPQRPRKSSKAAVTAGPEERGES 165
           SSGP LRP   R S+ + +   P   GES
Sbjct: 439 SSGPQLRPTH-RASTSSQIARSPRRNGES 466

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442622661|ref|NP_001260760.1| espinas, isoform C [Drosophila melanogaster] gi|440214151|gb|AGB93293.1| espinas, isoform C [Drosophila melanogaster]

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 108/208 (51%), Positives = 120/208 (57%), Gaps = 45/208 (21%)

Query: 1   MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV 60
           + VFA R G   CWHPGCF CSVC ELLVDLIYF R   LYCGRHHAET KPRCSACDE+
Sbjct: 605 IVVFAQRLGAQLCWHPGCFVCSVCKELLVDLIYFQRDGNLYCGRHHAETQKPRCSACDEI 664

Query: 61  ------------------------RVQVGGHRT-----RDLNINYFSSLPA--------- 82
                                     Q+GG R      +   +  F ++ A         
Sbjct: 665 IFSDECTEAEGRTWHMKHFACQECEHQLGGQRYIMREGKPYCLACFDTMFAEYCDYCGEV 724

Query: 83  -----GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSD- 136
                GQMSH+GQHWHATD CF C TC  SLLGRPFLPR G I+CSIACSKGEPPTPSD 
Sbjct: 725 IGVDQGQMSHDGQHWHATDQCFSCCTCRCSLLGRPFLPRRGTIYCSIACSKGEPPTPSDT 784

Query: 137 SSGPGLRPQRPRKSSKAAVTAGPEERGE 164
           SSGP LRP   R S+ + +   P   GE
Sbjct: 785 SSGPQLRPTH-RASTSSQIAKSPRRGGE 811

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195120295|ref|XP_002004664.1| GI19485 [Drosophila mojavensis] gi|193909732|gb|EDW08599.1| GI19485 [Drosophila mojavensis]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 107/212 (50%), Positives = 122/212 (57%), Gaps = 45/212 (21%)

Query: 1   MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV 60
           + VFA R G   CWHPGCF CSVC ELL+DLIYF+R   LYCGRHHAET KPRCSACDE+
Sbjct: 293 IVVFAQRLGAQVCWHPGCFVCSVCKELLMDLIYFHRDGNLYCGRHHAETQKPRCSACDEI 352

Query: 61  ------------------------RVQVGGHRT-----RDLNINYFSSLPA--------- 82
                                     Q+GG R      +   +  F ++ A         
Sbjct: 353 IFSDECTEAEGRTWHMKHFACQECEHQLGGQRYIMREGKPYCLGCFDTMFAEYCDYCGEV 412

Query: 83  -----GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSD- 136
                GQMSH+GQHWHATD CF C TC  SLLGRPFLPR G I+CSIACSKGEPPTPSD 
Sbjct: 413 IGVDQGQMSHDGQHWHATDQCFSCCTCRCSLLGRPFLPRRGTIYCSIACSKGEPPTPSDT 472

Query: 137 SSGPGLRPQRPRKSSKAAVTAGPEERGESPSR 168
           SSGP LRP   R S+ + +   P    +S  R
Sbjct: 473 SSGPQLRPTH-RASTSSQIARSPRRTADSAGR 503

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195474329|ref|XP_002089444.1| GE19116 [Drosophila yakuba] gi|194175545|gb|EDW89156.1| GE19116 [Drosophila yakuba]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/185 (53%), Positives = 117/185 (63%), Gaps = 43/185 (23%)

Query: 1   MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV 60
           ++VFA+R GPN+ WHP CF CSVC ELLVDLIYF+R  ++YCGRHHAETLKPRCSACDE+
Sbjct: 639 IAVFATRLGPNASWHPACFACSVCRELLVDLIYFHRDGRMYCGRHHAETLKPRCSACDEI 698

Query: 61  RV------------------------QVGGHRT-----RDLNINYFSSLPA--------- 82
            +                        Q+GG R      +   ++ F ++ A         
Sbjct: 699 ILADECTEAEGRAWHMNHFACHECDKQLGGQRYIMREGKPYCLHCFDAMFAEYCDYCGEA 758

Query: 83  -----GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDS 137
                GQMSH+GQHWHATD CF C TC  SLLGR FLPR G I+CSIACSKGEPPTPSDS
Sbjct: 759 IGVDQGQMSHDGQHWHATDECFSCNTCRCSLLGRAFLPRRGAIYCSIACSKGEPPTPSDS 818

Query: 138 SGPGL 142
           SG G+
Sbjct: 819 SGTGM 823

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17933748|ref|NP_524990.1| espinas, isoform B [Drosophila melanogaster] gi|24586169|ref|NP_724533.1| espinas, isoform A [Drosophila melanogaster] gi|74946863|sp|Q9U1I1.1|ESN_DROME RecName: Full=Protein espinas gi|6634092|emb|CAB64381.1| LIM-domain protein [Drosophila melanogaster] gi|10727796|gb|AAF59292.2| espinas, isoform A [Drosophila melanogaster] gi|21627797|gb|AAM68907.1| espinas, isoform B [Drosophila melanogaster] gi|157816302|gb|ABV82145.1| FI01027p [Drosophila melanogaster]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/208 (51%), Positives = 120/208 (57%), Gaps = 45/208 (21%)

Query: 1   MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV 60
           + VFA R G   CWHPGCF CSVC ELLVDLIYF R   LYCGRHHAET KPRCSACDE+
Sbjct: 256 IVVFAQRLGAQLCWHPGCFVCSVCKELLVDLIYFQRDGNLYCGRHHAETQKPRCSACDEI 315

Query: 61  ------------------------RVQVGGHRT-----RDLNINYFSSLPA--------- 82
                                     Q+GG R      +   +  F ++ A         
Sbjct: 316 IFSDECTEAEGRTWHMKHFACQECEHQLGGQRYIMREGKPYCLACFDTMFAEYCDYCGEV 375

Query: 83  -----GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSD- 136
                GQMSH+GQHWHATD CF C TC  SLLGRPFLPR G I+CSIACSKGEPPTPSD 
Sbjct: 376 IGVDQGQMSHDGQHWHATDQCFSCCTCRCSLLGRPFLPRRGTIYCSIACSKGEPPTPSDT 435

Query: 137 SSGPGLRPQRPRKSSKAAVTAGPEERGE 164
           SSGP LRP   R S+ + +   P   GE
Sbjct: 436 SSGPQLRPTH-RASTSSQIAKSPRRGGE 462

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442622663|ref|NP_001260761.1| espinas, isoform D [Drosophila melanogaster] gi|440214152|gb|AGB93294.1| espinas, isoform D [Drosophila melanogaster]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/208 (51%), Positives = 120/208 (57%), Gaps = 45/208 (21%)

Query: 1   MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV 60
           + VFA R G   CWHPGCF CSVC ELLVDLIYF R   LYCGRHHAET KPRCSACDE+
Sbjct: 256 IVVFAQRLGAQLCWHPGCFVCSVCKELLVDLIYFQRDGNLYCGRHHAETQKPRCSACDEI 315

Query: 61  ------------------------RVQVGGHRT-----RDLNINYFSSLPA--------- 82
                                     Q+GG R      +   +  F ++ A         
Sbjct: 316 IFSDECTEAEGRTWHMKHFACQECEHQLGGQRYIMREGKPYCLACFDTMFAEYCDYCGEV 375

Query: 83  -----GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSD- 136
                GQMSH+GQHWHATD CF C TC  SLLGRPFLPR G I+CSIACSKGEPPTPSD 
Sbjct: 376 IGVDQGQMSHDGQHWHATDQCFSCCTCRCSLLGRPFLPRRGTIYCSIACSKGEPPTPSDT 435

Query: 137 SSGPGLRPQRPRKSSKAAVTAGPEERGE 164
           SSGP LRP   R S+ + +   P   GE
Sbjct: 436 SSGPQLRPTH-RASTSSQIAKSPRRGGE 462

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24586188|ref|NP_724538.1| prickle, isoform C [Drosophila melanogaster] gi|148887002|sp|A1Z6W3.1|PRIC1_DROME RecName: Full=Protein prickle; AltName: Full=Protein spiny legs gi|21627804|gb|AAF59281.2| prickle, isoform C [Drosophila melanogaster]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 99/185 (53%), Positives = 117/185 (63%), Gaps = 43/185 (23%)

Query: 1   MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV 60
           ++VFA+R GPN+ WHP CF CSVC ELLVDLIYF+R  ++YCGRHHAETLKPRCSACDE+
Sbjct: 636 IAVFATRLGPNASWHPACFACSVCRELLVDLIYFHRDGRMYCGRHHAETLKPRCSACDEI 695

Query: 61  RV------------------------QVGGHRT-----RDLNINYFSSLPA--------- 82
            +                        Q+GG R      +   ++ F ++ A         
Sbjct: 696 ILADECTEAEGRAWHMNHFACHECDKQLGGQRYIMREGKPYCLHCFDAMFAEYCDYCGEA 755

Query: 83  -----GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDS 137
                GQMSH+GQHWHATD CF C TC  SLLGR FLPR G I+CSIACSKGEPPTPSDS
Sbjct: 756 IGVDQGQMSHDGQHWHATDECFSCNTCRCSLLGRAFLPRRGAIYCSIACSKGEPPTPSDS 815

Query: 138 SGPGL 142
           SG G+
Sbjct: 816 SGTGM 820

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
FB|FBgn0263934	785	esn "espinas" [Drosophila mela	0.636	0.136	0.543	4.3e-52
UNIPROTKB|Q292U5	795	esn "Protein espinas" [Drosoph	0.482	0.101	0.674	9.5e-52
UNIPROTKB|Q174I2	916	pk "Protein prickle" [Aedes ae	0.392	0.072	0.772	4.7e-51
FB|FBgn0003090	1299	pk "prickle" [Drosophila melan	0.357	0.046	0.8	3.5e-49
UNIPROTKB|Q292U2	1353	pk "Protein prickle" [Drosophi	0.5	0.062	0.604	3.9e-49
UNIPROTKB|Q7QJT4	923	pk "Protein prickle" [Anophele	0.357	0.065	0.783	6.5e-49
UNIPROTKB|E2RDF0	845	PRICKLE2 "Uncharacterized prot	0.357	0.071	0.75	1.7e-46
UNIPROTKB|F1Q4H0	620	PRICKLE3 "Uncharacterized prot	0.672	0.182	0.443	1.8e-46
UNIPROTKB|Q7Z3G6	844	PRICKLE2 "Prickle-like protein	0.357	0.071	0.75	2.1e-46
UNIPROTKB|H3BNU0	900	PRICKLE2 "Prickle-like protein	0.357	0.066	0.75	2.7e-46

FB|FBgn0263934 esn "espinas" [Drosophila melanogaster (taxid:7227)]

 Score = 312 (114.9 bits), Expect = 4.3e-52, Sum P(2) = 4.3e-52
 Identities = 63/116 (54%), Positives = 74/116 (63%)

Query:    51 KPRCSAC-DEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLL 109
             KP C AC D +  +   +    + ++       GQMSH+GQHWHATD CF C TC  SLL
Sbjct:   354 KPYCLACFDTMFAEYCDYCGEVIGVDQ------GQMSHDGQHWHATDQCFSCCTCRCSLL 407

Query:   110 GRPFLPRAGVIFCSIACSKGEPPTPSD-SSGPGLRPQRPRKSSKAAVTAGPEERGE 164
             GRPFLPR G I+CSIACSKGEPPTPSD SSGP LRP   R S+ + +   P   GE
Sbjct:   408 GRPFLPRRGTIYCSIACSKGEPPTPSDTSSGPQLRPTH-RASTSSQIAKSPRRGGE 462

GO:0005575 "cellular_component" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0070593 "dendrite self-avoidance" evidence=IMP

UNIPROTKB|Q292U5 esn "Protein espinas" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 309 (113.8 bits), Expect = 9.5e-52, Sum P(2) = 9.5e-52
 Identities = 56/83 (67%), Positives = 62/83 (74%)

Query:    83 GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSD-SSGPG 141
             GQMSH+GQHWHATD CF C TC  SLLGRPFLPR G I+CSIACSKGEPPTPSD SSGP 
Sbjct:   381 GQMSHDGQHWHATDQCFSCCTCRCSLLGRPFLPRRGTIYCSIACSKGEPPTPSDTSSGPQ 440

Query:   142 LRPQRPRKSSKAAVTAGPEERGE 164
             LRP   R S+ + +   P   G+
Sbjct:   441 LRPTH-RASTSSQIARSPRRSGD 462

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q174I2 pk "Protein prickle" [Aedes aegypti (taxid:7159)]

 Score = 293 (108.2 bits), Expect = 4.7e-51, Sum P(2) = 4.7e-51
 Identities = 51/66 (77%), Positives = 55/66 (83%)

Query:    83 GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSGPGL 142
             GQMSH+GQHWHATDSCF C+TC  SLLGRPFLPR G I+CSIACSKGEPPTPSD S P +
Sbjct:   413 GQMSHDGQHWHATDSCFACSTCRCSLLGRPFLPRRGEIYCSIACSKGEPPTPSDGSVPTV 472

Query:   143 RPQRPR 148
              P R R
Sbjct:   473 LPSRTR 478

GO:0001736 "establishment of planar polarity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0007164 "establishment of tissue polarity" evidence=ISS

GO:0009948 "anterior/posterior axis specification" evidence=ISS

FB|FBgn0003090 pk "prickle" [Drosophila melanogaster (taxid:7227)]

 Score = 279 (103.3 bits), Expect = 3.5e-49, Sum P(2) = 3.5e-49
 Identities = 48/60 (80%), Positives = 51/60 (85%)

Query:    83 GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSGPGL 142
             GQMSH+GQHWHATD CF C TC  SLLGR FLPR G I+CSIACSKGEPPTPSDSSG G+
Sbjct:   761 GQMSHDGQHWHATDECFSCNTCRCSLLGRAFLPRRGAIYCSIACSKGEPPTPSDSSGTGM 820

GO:0042067 "establishment of ommatidial planar polarity" evidence=IMP

GO:0007163 "establishment or maintenance of cell polarity" evidence=IMP;NAS

GO:0008104 "protein localization" evidence=TAS

GO:0045185 "maintenance of protein location" evidence=TAS

GO:0016020 "membrane" evidence=NAS

GO:0045184 "establishment of protein localization" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0001736 "establishment of planar polarity" evidence=TAS

GO:0001737 "establishment of imaginal disc-derived wing hair orientation" evidence=IMP;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001738 "morphogenesis of a polarized epithelium" evidence=IMP

UNIPROTKB|Q292U2 pk "Protein prickle" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 280 (103.6 bits), Expect = 3.9e-49, Sum P(2) = 3.9e-49
 Identities = 52/86 (60%), Positives = 57/86 (66%)

Query:    83 GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSGPGL 142
             GQMSH+GQHWHATD CF C TC  SLLGR FLPR G I+CSIACSKGEPPTPSDSSG G+
Sbjct:   794 GQMSHDGQHWHATDECFSCNTCRCSLLGRAFLPRRGAIYCSIACSKGEPPTPSDSSGTGM 853

Query:   143 --RPQRPRKSSKAAVTAGPEERGESP 166
                P  P +  +            SP
Sbjct:   854 YTTPTPPTQRVRPQTRITSSHASSSP 879

GO:0001736 "establishment of planar polarity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0007164 "establishment of tissue polarity" evidence=ISS

GO:0009948 "anterior/posterior axis specification" evidence=ISS

UNIPROTKB|Q7QJT4 pk "Protein prickle" [Anopheles gambiae (taxid:7165)]

 Score = 282 (104.3 bits), Expect = 6.5e-49, Sum P(2) = 6.5e-49
 Identities = 47/60 (78%), Positives = 52/60 (86%)

Query:     1 MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV 60
             M VFASR  PN+CWHP CF C VC ELLVDLIYF+R ++LYCGRHHAETLKPRCSACDE+
Sbjct:   396 MMVFASRFEPNTCWHPACFACCVCKELLVDLIYFHRENRLYCGRHHAETLKPRCSACDEI 455

GO:0001736 "establishment of planar polarity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0007164 "establishment of tissue polarity" evidence=ISS

GO:0009948 "anterior/posterior axis specification" evidence=ISS

UNIPROTKB|E2RDF0 PRICKLE2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 273 (101.2 bits), Expect = 1.7e-46, Sum P(2) = 1.7e-46
 Identities = 45/60 (75%), Positives = 52/60 (86%)

Query:     1 MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV 60
             ++VFASRAG   CWHP CF C+VCNELLVDLIYFY+  K+YCGRHHAE LKPRC+ACDE+
Sbjct:   142 IAVFASRAGHGVCWHPPCFICTVCNELLVDLIYFYQDGKIYCGRHHAECLKPRCAACDEI 201

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0016328 "lateral plasma membrane" evidence=IEA

GO:0016327 "apicolateral plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1Q4H0 PRICKLE3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 262 (97.3 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
 Identities = 55/124 (44%), Positives = 70/124 (56%)

Query:    51 KPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLG 110
             +P C AC E R     H            L  GQM++EGQHWHA+D CFCC+ C  +LLG
Sbjct:   296 RPHCCACYEAR-----HAEYCDGCGEHIGLDQGQMAYEGQHWHASDRCFCCSRCGRALLG 350

Query:   111 RPFLPRAGVIFCSIACSKGEPPTPSDSSGPGLRP------QRPRKSSKAAVTAGPEERGE 164
             RPFLPR G+IFCS ACS G  PT S +SG G +         P  +S A+ +A  EE  E
Sbjct:   351 RPFLPRRGLIFCSRACSLGSEPTSSGTSGTGRQSWSAGTVSAPLAASSASFSAAEEETAE 410

Query:   165 SPSR 168
             + ++
Sbjct:   411 TATK 414

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q7Z3G6 PRICKLE2 "Prickle-like protein 2" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 2.1e-46, Sum P(2) = 2.1e-46
 Identities = 45/60 (75%), Positives = 52/60 (86%)

Query:     1 MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV 60
             ++VFASRAG   CWHP CF C+VCNELLVDLIYFY+  K+YCGRHHAE LKPRC+ACDE+
Sbjct:   142 IAVFASRAGHGVCWHPPCFVCTVCNELLVDLIYFYQDGKIYCGRHHAECLKPRCAACDEI 201

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016327 "apicolateral plasma membrane" evidence=IEA

GO:0016328 "lateral plasma membrane" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|H3BNU0 PRICKLE2 "Prickle-like protein 2" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 2.7e-46, Sum P(2) = 2.7e-46
 Identities = 45/60 (75%), Positives = 52/60 (86%)

Query:     1 MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV 60
             ++VFASRAG   CWHP CF C+VCNELLVDLIYFY+  K+YCGRHHAE LKPRC+ACDE+
Sbjct:   198 IAVFASRAGHGVCWHPPCFVCTVCNELLVDLIYFYQDGKIYCGRHHAECLKPRCAACDEI 257

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9U1I1	ESN_DROME	No assigned EC number	0.5192	0.9702	0.2076	yes	N/A
Q292U5	ESN_DROPS	No assigned EC number	0.5144	0.9702	0.2050	yes	N/A
Q7QJT4	PRIC1_ANOGA	No assigned EC number	0.5586	0.8095	0.1473	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	168
cd09415	59	cd09415, LIM1_Prickle, The first LIM domain of Pri	1e-28
cd09340	58	cd09340, LIM1_Testin_like, The first LIM domain of	6e-26
cd09420	59	cd09420, LIM3_Prickle, The third LIM domain of Pri	7e-24
cd09841	59	cd09841, LIM1_Prickle_3, The first LIM domain of P	5e-22
cd09483	59	cd09483, LIM1_Prickle_1, The first LIM domain of P	4e-21
cd09484	59	cd09484, LIM1_Prickle_2, The first LIM domain of P	7e-21
cd09413	58	cd09413, LIM1_Testin, The first LIM domain of Test	6e-18
cd09342	57	cd09342, LIM3_Testin_like, The third LIM domain of	9e-18
cd09414	58	cd09414, LIM1_LIMPETin, The first LIM domain of pr	4e-14
cd09419	59	cd09419, LIM3_Testin, The third LIM domain of Test	1e-08
smart00132	54	smart00132, LIM, Zinc-binding domain present in Li	5e-08
pfam00412	58	pfam00412, LIM, LIM domain	7e-08
cd08368	53	cd08368, LIM, LIM is a small protein-protein inter	3e-07
cd09425	54	cd09425, LIM4_LIMPETin, The fourth LIM domain of p	5e-05
cd09421	59	cd09421, LIM3_LIMPETin, The third LIM domain of pr	5e-05
cd09421	59	cd09421, LIM3_LIMPETin, The third LIM domain of pr	6e-05
cd09360	52	cd09360, LIM_ALP_like, The LIM domain of ALP (acti	6e-05
cd09434	56	cd09434, LIM4_FHL3, The fourth LIM domain of Four	1e-04
smart00132	54	smart00132, LIM, Zinc-binding domain present in Li	2e-04
cd09348	64	cd09348, LIM4_FHL1, The fourth LIM domain of Four	3e-04
cd09432	56	cd09432, LIM6_LIMPETin, The sixth LIM domain of pr	3e-04
cd09463	53	cd09463, LIM1_LIMK2, The first LIM domain of LIMK2	3e-04
cd09347	56	cd09347, LIM4_FHL, The fourth LIM domain of Four a	3e-04
cd09459	55	cd09459, LIM3_ENH, The third LIM domain of the Eni	6e-04
cd09332	52	cd09332, LIM2_PINCH, The second LIM domain of prot	0.001
cd09343	59	cd09343, LIM1_FHL, The first LIM domain of Four an	0.002
cd09345	54	cd09345, LIM2_FHL, The second LIM domain of Four a	0.003
cd09371	53	cd09371, LIM1_Lmx1b, The first LIM domain of Lmx1b	0.003
cd09363	54	cd09363, LIM3_Enigma_like, The third LIM domain of	0.004
cd09364	53	cd09364, LIM1_LIMK, The first LIM domain of LIMK (	0.004
cd09344	54	cd09344, LIM1_FHL1, The first LIM domain of Four a	0.004

>gnl|CDD|188799 cd09415, LIM1_Prickle, The first LIM domain of Prickle

 Score =  100 bits (251), Expect = 1e-28
 Identities = 35/47 (74%), Positives = 40/47 (85%)

Query: 1  MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHA 47
          ++VFASRAGP +CWHP CF CS C ELLVDLIYFY+  K+YCGRHHA
Sbjct: 13 IAVFASRAGPGACWHPACFVCSTCKELLVDLIYFYQDGKVYCGRHHA 59

The first LIM domain of Prickle: Prickle contains three C-terminal LIM domains and a N-terminal PET domain. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). PCP establishment requires the conserved Frizzled/Dishevelled PCP pathway. Prickle interacts with Dishevelled, thereby modulating Frizzled/Dishevelled activity and PCP signaling. Four forms of prickles have been identified: prickle 1-4. The best characterized is prickle 1 and prickle 2 which are differentially expressed. While prickle 1 is expressed in fetal heart and hematological malignancies, prickle 2 is found in fetal brain, adult cartilage, pancreatic islet, and some types of timorous cells. Mutations in prickle 1 have been linked to progressive myoclonus epilepsy. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 59

>gnl|CDD|188726 cd09340, LIM1_Testin_like, The first LIM domain of Testin-like family

 Score = 93.0 bits (232), Expect = 6e-26
 Identities = 32/46 (69%), Positives = 38/46 (82%)

Query: 1  MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHH 46
          ++VFA RAG ++CWHPGCF C  CNELLVDLIYFY   K+YCGRH+
Sbjct: 13 VAVFAERAGEDACWHPGCFVCETCNELLVDLIYFYHDGKIYCGRHY 58

The first LIM domain of Testin_like family: This family includes testin, prickle, dyxin and LIMPETin. Structurally, testin and prickle proteins contain three LIM domains at C-terminal; LIMPETin has six LIM domains; and dyxin presents only two LIM domains. However, all members of the family contain a PET protein-protein interaction domain. Testin is a cytoskeleton associated focal adhesion protein that localizes along actin stress fibers, at cell-cell-contact areas, and at focal adhesion plaques. Testin interacts with a variety of cytoskeletal proteins, including zyxin, mena, VASP, talin, and actin and it is involved in cell motility and adhesion events. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). Dyxin involves in lung and heart development by interaction with GATA6 and blocking GATA6 activated target genes. LIMPETin might be the recombinant product of genes coding testin and four and half LIM proteins and its function is not well understood. As in other LIM domains, this domain family is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 58

>gnl|CDD|188804 cd09420, LIM3_Prickle, The third LIM domain of Prickle

 Score = 87.9 bits (218), Expect = 7e-24
 Identities = 32/45 (71%), Positives = 38/45 (84%)

Query: 83  GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACS 127
           GQM+++GQHWHAT+ CFCCA C  SLLGRPFLP+ G I+CS ACS
Sbjct: 15  GQMTYDGQHWHATEKCFCCAQCKKSLLGRPFLPKQGQIYCSRACS 59

The third LIM domain of Prickle: Prickle contains three C-terminal LIM domains and a N-terminal PET domain. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). PCP establishment requires the conserved Frizzled/Dishevelled PCP pathway. Prickle interacts with Dishevelled, thereby modulating Frizzled/Dishevelled activity and PCP signaling. Two forms of prickles have been identified; namely prickle 1 and prickle 2. Prickle 1 and prickle 2 are differentially expressed. While prickle 1 is expressed in fetal heart and hematological malignancies, prickle 2 is found in fetal brain, adult cartilage, pancreatic islet, and some types of timorous cells. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 59

>gnl|CDD|188872 cd09841, LIM1_Prickle_3, The first LIM domain of Prickle 3

 Score = 83.4 bits (206), Expect = 5e-22
 Identities = 33/47 (70%), Positives = 39/47 (82%)

Query: 1  MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHA 47
          ++VFASRAG  +CWHP CF C+ C ELLVDLIYFY+  K+YCGRHHA
Sbjct: 13 IAVFASRAGLGACWHPQCFQCASCQELLVDLIYFYQDGKIYCGRHHA 59

The first LIM domain of Prickle 3/LIM domain only 6 (LM06): Prickle contains three C-terminal LIM domains and a N-terminal PET domain. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). PCP establishment requires the conserved Frizzled/Dishevelled PCP pathway. Prickle interacts with Dishevelled, thereby modulating Frizzled/Dishevelled activity and PCP signaling. Four forms of prickles have been identified: prickle 1-4. The best characterized is prickle 1 and prickle 2 which are differentially expressed. While prickle 1 is expressed in fetal heart and hematological malignancies, prickle 2 is found in fetal brain, adult cartilage, pancreatic islet, and some types of timorous cells. Mutations in prickle 1 have been linked to progressive myoclonus epilepsy. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 59

>gnl|CDD|188867 cd09483, LIM1_Prickle_1, The first LIM domain of Prickle 1

 Score = 81.1 bits (200), Expect = 4e-21
 Identities = 34/47 (72%), Positives = 39/47 (82%)

Query: 1  MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHA 47
          ++VFASRAGP  CWHP CF C  CNELLVDLIYFY+  K++CGRHHA
Sbjct: 13 VAVFASRAGPGVCWHPSCFVCFTCNELLVDLIYFYQDGKIHCGRHHA 59

The first LIM domain of Prickle 1. Prickle contains three C-terminal LIM domains and a N-terminal PET domain Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). PCP establishment requires the conserved Frizzled/Dishevelled PCP pathway. Prickle interacts with Dishevelled, thereby modulating Frizzled/Dishevelled activity and PCP signaling. Four forms of prickles have been identified: prickle 1-4. The best characterized is prickle 1 and prickle 2 which are differentially expressed. While prickle 1 is expressed in fetal heart and hematological malignancies, prickle 2 is found in mainly expressed in fetal brain, adult cartilage, pancreatic islet, and some types of timorous cells. In addition, Prickle 1 regulates cell movements during gastrulation and neuronal migration through interaction with the noncanonical Wnt11/Wnt5 pathway in zebrafish. Mutations in prickle 1 have been linked to progressive myoclonus epilepsy. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 59

>gnl|CDD|188868 cd09484, LIM1_Prickle_2, The first LIM domain of Prickle 2

 Score = 80.4 bits (198), Expect = 7e-21
 Identities = 36/47 (76%), Positives = 40/47 (85%)

Query: 1  MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHA 47
          ++VFASRAG   CWHP CF CSVCNELLVDLIYFY+  K+YCGRHHA
Sbjct: 13 IAVFASRAGHGVCWHPQCFVCSVCNELLVDLIYFYQDGKIYCGRHHA 59

The first LIM domain of Prickle 2: Prickle contains three C-terminal LIM domains and a N-terminal PET domain. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). PCP establishment requires the conserved Frizzled/Dishevelled PCP pathway. Prickle interacts with Dishevelled, thereby modulating Frizzled/Dishevelled activity and PCP signaling. Four forms of prickles have been identified: prickle 1-4. The best characterized is prickle 1 and prickle 2 which are differentially expressed. While prickle 1 is expressed in fetal heart and hematological malignancies, prickle 2 is found in fetal brain, adult cartilage, pancreatic islet, and some types of timorous cells. Mutations in prickle 1 have been linked to progressive myoclonus epilepsy. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 59

>gnl|CDD|188797 cd09413, LIM1_Testin, The first LIM domain of Testin

 Score = 72.9 bits (179), Expect = 6e-18
 Identities = 28/45 (62%), Positives = 35/45 (77%)

Query: 2  SVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHH 46
          +V+A RAG +  WHP CF CS C ELLVD+IYF++  KLYCGRH+
Sbjct: 14 AVYAERAGYDKLWHPACFVCSTCGELLVDMIYFWKNGKLYCGRHY 58

The first LIM domain of Testin: Testin contains three C-terminal LIM domains and a PET protein-protein interaction domain at the N-terminal. Testin is a cytoskeleton associated focal adhesion protein that localizes along actin stress fibers, at cell-cell-contact areas, and at focal adhesion plaques. Testin interacts with a variety of cytoskeletal proteins, including zyxin, mena, VASP, talin, and actin and it is involved in cell motility and adhesion events. Knockout mice experiments reveal that tumor repressor function of Testin. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 58

>gnl|CDD|188728 cd09342, LIM3_Testin_like, The third LIM domain of Testin-like family

 Score = 72.4 bits (178), Expect = 9e-18
 Identities = 27/46 (58%), Positives = 34/46 (73%)

Query: 82  AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACS 127
             +++H GQHWHAT+ CFCC+ C  SLLG+PFLP+ G IFCS  C 
Sbjct: 12  VQRVAHNGQHWHATEECFCCSNCKKSLLGQPFLPKNGQIFCSPKCK 57

The third LIM domain of Testin_like family: This family includes testin, prickle, dyxin and LIMPETin. Structurally, testin and prickle proteins contain three LIM domains at C-terminal; LIMPETin has six LIM domains; and dyxin presents only two LIM domains. However, all members of the family contain a PET protein-protein interaction domain. Testin is a cytoskeleton associated focal adhesion protein that localizes along actin stress fibers, at cell-cell-contact areas, and at focal adhesion plaques. Testin interacts with a variety of cytoskeletal proteins, including zyxin, mena, VASP, talin, and actin and it is involved in cell motility and adhesion events. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). Dyxin involves in lung and heart development by interaction with GATA6 and blocking GATA6 activated target genes. LIMPETin might be the recombinant product of genes coding testin and four and half LIM proteins and its function is not well understood. As in other LIM domains, this domain family is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 57

>gnl|CDD|188798 cd09414, LIM1_LIMPETin, The first LIM domain of protein LIMPETin

 Score = 63.2 bits (154), Expect = 4e-14
 Identities = 23/46 (50%), Positives = 30/46 (65%)

Query: 1  MSVFASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHH 46
          ++V A + G +  WHP CF CS C ELLVDL Y    D++YC RH+
Sbjct: 13 LAVTAPKFGESLLWHPACFRCSTCEELLVDLTYCVHDDQIYCERHY 58

The first LIM domain of protein LIMPETin: LIMPETin contains 6 LIM domains at the C-terminal and an N-terminal PET domain. Four of the six LIM domains are highly homologous to the four and half LIM domain protein family and two of them show sequence similarity to the LIM domains of the Testin family. Thus, LIMPETin may be the recombinant product of genes coding testin and FHL proteins. In Schistosoma mansoni, where LIMPETin was first identified, LIMPETin is down regulated in sexually mature adult Schistosoma females compared to sexually immature adult females and adult male. Its differential expression indicates that it is a transcription regulator. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 58

>gnl|CDD|188803 cd09419, LIM3_Testin, The third LIM domain of Testin

 Score = 48.3 bits (115), Expect = 1e-08
 Identities = 20/45 (44%), Positives = 30/45 (66%)

Query: 84  QMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSK 128
           ++S+   HWHA   CF C+ CS  L+G+ F+P  G++FCS+ C K
Sbjct: 14  RVSYNNFHWHAEPECFLCSCCSKCLIGQKFMPVEGMVFCSVECKK 58

The third LIM domain of Testin: Testin contains three C-terminal LIM domains and a PET protein-protein interaction domain at the N-terminal. Testin is a cytoskeleton associated focal adhesion protein that localizes along actin stress fibers at cell-cell-contact areas and at focal adhesion plaques. Testin interacts with a variety of cytoskeletal proteins, including zyxin, mena, VASP, talin, and actin and it is involved in cell motility and adhesion events. Knockout mice experiments reveal that tumor repressor function of Testin. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 59

>gnl|CDD|214528 smart00132, LIM, Zinc-binding domain present in Lin-11, Isl-1, Mec-3

 Score = 47.0 bits (112), Expect = 5e-08
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRH 45
             WHP CF C+ C + L    +F +  KLYC   
Sbjct: 20 GKVWHPECFKCATCGKPLSGDTFFEKDGKLYCKDC 54

Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways. Length = 54

>gnl|CDD|215907 pfam00412, LIM, LIM domain

 Score = 46.6 bits (111), Expect = 7e-08
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 4  FASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHH 46
             R      WHP CF C+VC + L    +F +  KLYC   +
Sbjct: 12 ELVRRALGKVWHPECFRCAVCGKPLGPGDFFEKDGKLYCKHDY 54

This family represents two copies of the LIM structural domain. Length = 58

>gnl|CDD|188711 cd08368, LIM, LIM is a small protein-protein interaction domain, containing two zinc fingers

 Score = 45.0 bits (107), Expect = 3e-07
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHH 46
             WHP CF CSVC + L    ++ +  K YC + +
Sbjct: 18 GKKWHPECFKCSVCGKPLGGDSFYEKDGKPYCEKCY 53

LIM domains are identified in a diverse group of proteins with wide variety of biological functions, including gene expression regulation, cell fate determination, cytoskeleton organization, tumor formation and development. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. They perform their functions through interactions with other protein partners. LIM domains are 50-60 amino acids in size and share two characteristic highly conserved zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The consensus sequence of LIM domain has been defined as C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16, 21)-C-x(2,3)-[CHD] (where X denotes any amino acid). Length = 53

>gnl|CDD|188809 cd09425, LIM4_LIMPETin, The fourth LIM domain of protein LIMPETin

 Score = 39.0 bits (91), Expect = 5e-05
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 84  QMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFC 122
           +M ++GQ WH  + CFCC  C   +  + F+P+   ++C
Sbjct: 14  KMEYKGQQWH--EKCFCCCECKQPIGTKSFIPKDDDVYC 50

The fourth LIM domain of protein LIMPETin: LIMPETin contains 6 LIM domains at the C-terminal and an N-terminal PET domain. Four of the six LIM domains are highly homologous to the four and half LIM domain protein family and two of them show sequence similarity to the LIM domains of the Testin family. Thus, LIMPETin may be the recombinant product of genes coding testin and FHL proteins. In Schistosoma mansoni, where LIMPETin was first identified, LIMPETin is down regulated in sexually mature adult Schistosoma females compared to sexually immature adult females and adult male. Its differential expression indicates that it is a transcription regulator. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 54

>gnl|CDD|188805 cd09421, LIM3_LIMPETin, The third LIM domain of protein LIMPETin

 Score = 39.1 bits (91), Expect = 5e-05
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 14 WHPGCFTCSVCNELLVDLIYFYRGDKLYCGR 44
          WH  CF CS C   LVD  +  + D++YCG 
Sbjct: 26 WHEACFLCSKCKISLVDKPFGSKADRIYCGN 56

The third LIM domain of protein LIMPETin: LIMPETin contains 6 LIM domains at the C-terminal and an N-terminal PET domain. Four of the six LIM domains are highly homologous to the four and half LIM domain protein family and two of them show sequence similarity to the LIM domains of the testin family. Thus, LIMPETin may be the recombinant product of genes coding testin and FHL proteins. In Schistosoma mansoni, where LIMPETin was first identified, LIMPETin is down regulated in sexually mature adult Schistosoma females compared to sexually immature adult females and adult male. Its differential expression indicates that it is a transcription regulator. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 59

>gnl|CDD|188805 cd09421, LIM3_LIMPETin, The third LIM domain of protein LIMPETin

 Score = 38.7 bits (90), Expect = 6e-05
 Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 2/39 (5%)

Query: 85  MSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCS 123
           +S++ +HWH  ++CF C+ C +SL+ +PF  +A  I+C 
Sbjct: 19  LSYKDKHWH--EACFLCSKCKISLVDKPFGSKADRIYCG 55

The third LIM domain of protein LIMPETin: LIMPETin contains 6 LIM domains at the C-terminal and an N-terminal PET domain. Four of the six LIM domains are highly homologous to the four and half LIM domain protein family and two of them show sequence similarity to the LIM domains of the testin family. Thus, LIMPETin may be the recombinant product of genes coding testin and FHL proteins. In Schistosoma mansoni, where LIMPETin was first identified, LIMPETin is down regulated in sexually mature adult Schistosoma females compared to sexually immature adult females and adult male. Its differential expression indicates that it is a transcription regulator. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 59

>gnl|CDD|188746 cd09360, LIM_ALP_like, The LIM domain of ALP (actinin-associated LIM protein) family

 Score = 38.5 bits (90), Expect = 6e-05
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 15 HPGCFTCSVCNELLVDLIYFYRGDKLYCGRH 45
          HP CF C+ C   L +  YF+  D+LYC  H
Sbjct: 21 HPECFVCADCGLNLKNKGYFFIEDELYCETH 51

This family represents the LIM domain of ALP (actinin-associated LIM protein) family. Four proteins: ALP, CLP36, RIL, and Mystique have been classified into the ALP subfamily of LIM domain proteins. Each member of the subfamily contains an N-terminal PDZ domain and a C-terminal LIM domain. Functionally, these proteins bind to alpha-actinin through their PDZ domains and bind or other signaling molecules through their LIM domains. ALP proteins have been implicated in cardiac and skeletal muscle structure, function and disease, platelet, and epithelial cell motility. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 52

>gnl|CDD|188818 cd09434, LIM4_FHL3, The fourth LIM domain of Four and a half LIM domains protein 3 (FHL3)

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 85  MSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCS 123
           +S E + WH    CF C+ CS+SL+G  F P    I C 
Sbjct: 17  VSFEDRQWH--QPCFKCSRCSVSLVGAGFFPDGDQILCR 53

The fourth LIM domain of Four and a half LIM domains protein 3 (FHL3): FHL3 is highly expressed in the skeleton and cardiac muscles and possesses the transactivation and repression activities. FHL3 interacts with many transcription factors, such as CREB, BKLF/KLF3, CtBP2, MyoD, and MZF_1. Moreover, FHL3 interacts with alpha- and beta-subunits of the muscle alpha7beta1 integrin receptor. FHL3 was also proved to possess the auto-activation ability and was confirmed that the second zinc finger motif in fourth LIM domain was responsible for the auto-activation of FHL3. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 56

>gnl|CDD|214528 smart00132, LIM, Zinc-binding domain present in Lin-11, Isl-1, Mec-3

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 85  MSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFC 122
           +   G+ WH    CF CATC   L G  F  + G ++C
Sbjct: 16  LRALGKVWHP--ECFKCATCGKPLSGDTFFEKDGKLYC 51

Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways. Length = 54

>gnl|CDD|188734 cd09348, LIM4_FHL1, The fourth LIM domain of Four and a half LIM domains protein 1 (FHL1)

 Score = 37.1 bits (86), Expect = 3e-04
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 86  SHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSK 128
           ++EG  WH  D CF C  CSL+L  + F+   G I+CS    K
Sbjct: 23  NYEGSSWH--DYCFNCKKCSLNLANKRFVFHNGQIYCSDCAKK 63

The fourth LIM domain of Four and a half LIM domains protein 1 (FHL1): FHL1 is heavily expressed in skeletal and cardiac muscles. It plays important roles in muscle growth, differentiation, and sarcomere assembly by acting as a modulator of transcription factors. Defects in FHL1 gene are responsible for a number of Muscular dystrophy-like muscle disorders. It has been detected that FHL1 binds to Myosin-binding protein C, regulating myosin filament formation and sarcomere assembly. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 64

>gnl|CDD|188816 cd09432, LIM6_LIMPETin, The sixth LIM domain of protein LIMPETin

 Score = 37.1 bits (86), Expect = 3e-04
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 85  MSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFC 122
           +S E +HWH  + CF CA C  SL+G+ F+   G I C
Sbjct: 17  ISFEDRHWH--NDCFNCAGCRTSLVGKGFITDGGRILC 52

The sixth LIM domain of protein LIMPETin: LIMPETin contains 6 LIM domains at the C-terminal and an N-terminal PET domain. Four of the six LIM domains are highly homologous to the four and half LIM domain protein family and two of them show sequence similarity to the LIM domains of the testin family. Thus, LIMPETin may be the recombinant product of genes coding testin and FHL proteins. In Schistosoma mansoni, where LIMPETin was first identified, LIMPETin is down regulated in sexually mature adult Schistosoma females compared to sexually immature adult females and adult male. Its differential expression indicates that it is a transcription regulator. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 56

>gnl|CDD|188847 cd09463, LIM1_LIMK2, The first LIM domain of LIMK2 (LIM domain Kinase 2)

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHH 46
             WH  CF CSVC +LL +  Y+ +  KLYC +H+
Sbjct: 18 QEAWHNSCFQCSVCQDLLTNW-YYEKDGKLYCHKHY 52

The first LIM domain of LIMK2 (LIM domain Kinase 2): LIMK2 is a member of the LIMK protein family, which comprises LIMK1 and LIMK2. LIMK contains two LIM domains, a PDZ domain, and a kinase domain. LIMK is involved in the regulation of actin polymerization and microtubule disassembly. LIMK influences architecture of the actin cytoskeleton by regulating the activity of the cofilin family proteins cofilin1, cofilin2, and destrin. The mechanism of the activation is to phosphorylates cofilin on serine 3 and inactivates its actin-severing activity, altering the rate of actin depolymerization. LIMK activity is activated by phosphorylation of a threonine residue within the activation loop of the kinase by p21-activated kinases 1 and 4 and by Rho kinase. LIMKs can function in both cytoplasm and nucleus. Both LIMK1 and LIMK2 can act in the nucleus to suppress Rac/Cdc42-dependent cyclin D1 expression. LIMK2 is expressed in all tissues. While LIMK1 localizes mainly at focal adhesions, LIMK2 is found in cytoplasmic punctae, suggesting that they may have different cellular functions. The activity of LIM kinase 2 to regulate cofilin phosphorylation is inhibited by the direct binding of Par-3. LIMK2 activation promotes cell cycle progression. The phenotype of Limk2 knockout mice shows a defect in spermatogenesis. The LIM domains have been shown to play an important role in regulating kinase activity and likely also contribute to LIMK function by acting as sites of protein-to-protein interactions. All LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 53

>gnl|CDD|188733 cd09347, LIM4_FHL, The fourth LIM domain of Four and a half LIM domains protein (FHL)

 Score = 36.6 bits (85), Expect = 3e-04
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 86  SHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCS 123
           S E + WH    CF C  CS+SL+G+ FL +   I C 
Sbjct: 18  SFEERQWH--SDCFNCGKCSVSLVGQGFLTQRDEILCP 53

The fourth LIM domain of Four and a half LIM domains protein (FHL): LIM-only protein family consists of five members, designated FHL1, FHL2, FHL3, FHL5 and LIMPETin. The first four members are composed of four complete LIM domains arranged in tandem and an N-terminal single zinc finger domain with a consensus sequence equivalent to the C-terminal half of a LIM domain. LIMPETin is an exception, containing six LIM domains. FHL1, 2 and 3 are predominantly expressed in muscle tissues, and FHL5 is highly expressed in male germ cells. FHL proteins exert their roles as transcription co-activators or co-repressors through a wide array of interaction partners. For example, FHL1 binds to Myosin-binding protein C, regulating myosin filament formation and sarcomere assembly. FHL2 has shown to interact with more than 50 different proteins, including receptors, structural proteins, transcription factors and cofactors, signal transducers, splicing factors, DNA replication and repair enzymes, and metabolic enzymes. FHL3 interacts with many transcription factors, such as CREB, BKLF/KLF3, CtBP2, MyoD, and MZF_1. FHL5 is a tissue-specific coactivator of CREB/CREM family transcription factors. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 56

>gnl|CDD|188843 cd09459, LIM3_ENH, The third LIM domain of the Enigma Homolog (ENH) family

 Score = 36.1 bits (83), Expect = 6e-04
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 14 WHPGCFTCSVCNELLVDLIYFYRGDKLYCGRH 45
          WH  CF CSVC E L    +F + DK  C +H
Sbjct: 22 WHDTCFVCSVCCESLEGQTFFSKKDKPLCKKH 53

The third LIM domain of the Enigma Homolog (ENH) family: ENH was initially identified in rat brain. Same as enigma, it contains three LIM domains at the C-terminus and a PDZ domain at N-terminus. ENH is implicated in signal transduction processes involving protein kinases. It has also been shown that ENH interacts with protein kinase D1 (PKD1) via its LIM domains and forms a complex with PKD1 and the alpha1C subunit of cardiac L-type voltage-gated calcium channel in rat neonatal cardiomyocytes. The N-terminal PDZ domain interacts with alpha-actinin at the Z-line. ENH is expressed in multiple tissues, such as skeletal muscle, heart, bone, and brain. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 55

>gnl|CDD|188718 cd09332, LIM2_PINCH, The second LIM domain of protein PINCH

 Score = 35.0 bits (81), Expect = 0.001
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 11 NSCWHPGCFTCSVCNELLVDL 31
          N+ WHP CF C +CN+ L D+
Sbjct: 17 NNNWHPDCFRCEICNKELADI 37

The second LIM domain of protein PINCH: PINCH plays a pivotal role in the assembly of focal adhesions (FAs), regulating diverse functions in cell adhesion, growth, and differentiation through LIM-mediated protein-protein interactions. PINCH comprises an array of five LIM domains that interact with integrin-linked kinase (ILK), Nck2 (also called Nckbeta or Grb4) and other interaction partners. These interactions are essential for triggering the FA assembly and for relaying diverse mechanical and biochemical signals between Cell-extracellular matrix and the actin cytoskeleton. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 52

>gnl|CDD|188729 cd09343, LIM1_FHL, The first LIM domain of Four and a half LIM domains protein (FHL)

 Score = 34.7 bits (80), Expect = 0.002
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 85  MSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCS 123
           +S++ +HWH    CF C  C  SL+ +PF  +   + C+
Sbjct: 19  LSYKDRHWHEG--CFKCFKCQRSLVDKPFAAKDEDLLCT 55

The first LIM domain of Four and a half LIM domains protein (FHL): LIM-only protein family consists of five members, designated FHL1, FHL2, FHL3, FHL5 and LIMPETin. The first four members are composed of four complete LIM domains arranged in tandem and an N-terminal single zinc finger domain with a consensus sequence equivalent to the C-terminal half of a LIM domain. LIMPETin is an exception, containing six LIM domains. FHL1, 2 and 3 are predominantly expressed in muscle tissues, and FHL5 is highly expressed in male germ cells. FHL proteins exert their roles as transcription co-activators or co-repressors through a wide array of interaction partners. For example, FHL1 binds to Myosin-binding protein C, regulating myosin filament formation and sarcomere assembly. FHL2 has shown to interact with more than 50 different proteins, including receptors, structural proteins, transcription factors and cofactors, signal transducers, splicing factors, DNA replication and repair enzymes, and metabolic enzymes. FHL3 int eracts with many transcription factors, such as CREB, BKLF/KLF3, CtBP2, MyoD, and MZF_1. FHL5 is a tissue-specific coactivator of CREB/CREM family transcription factors. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 59

>gnl|CDD|188731 cd09345, LIM2_FHL, The second LIM domain of Four and a half LIM domains protein (FHL)

 Score = 34.2 bits (79), Expect = 0.003
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 85  MSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFC 122
           M ++G+ WH  + CF C+ C   +  + F+P+   I+C
Sbjct: 15  MEYKGKFWH--EKCFTCSECKKPIGTKSFIPKDDKIYC 50

The second LIM domain of Four and a half LIM domains protein (FHL): LIM-only protein family consists of five members, designated FHL1, FHL2, FHL3, FHL5 and LIMPETin. The first four members are composed of four complete LIM domains arranged in tandem and an N-terminal single zinc finger domain with a consensus sequence equivalent to the C-terminal half of a LIM domain. LIMPETin is an exception, containing six LIM domains. FHL1, 2 and 3 are predominantly expressed in muscle tissues, and FHL5 is highly expressed in male germ cells. FHL proteins exert their roles as transcription co-activators or co-repressors through a wide array of interaction partners. For example, FHL1 binds to Myosin-binding protein C, regulating myosin filament formation and sarcomere assembly. FHL2 has shown to interact with more than 50 different proteins, including receptors, structural proteins, transcription factors and cofactors, signal transducers, splicing factors, DNA replication and repair enzymes, and metabolic enzymes. FHL3 int eracts with many transcription factors, such as CREB, BKLF/KLF3, CtBP2, MyoD, and MZF_1. FHL5 is a tissue-specific coactivator of CREB/CREM family transcription factors. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 54

>gnl|CDD|188757 cd09371, LIM1_Lmx1b, The first LIM domain of Lmx1b

 Score = 33.9 bits (78), Expect = 0.003
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 12 SCWHPGCFTCSVCNELLVDLIYFYRGDKLYC 42
            WH  C  CSVC + L    YF R  KLYC
Sbjct: 19 RSWHEECLQCSVCQQPLTTSCYF-RDRKLYC 48

The first LIM domain of Lmx1b: Lmx1b belongs to the LHX protein family, which features two tandem N-terminal LIM domains and a C-terminal DNA binding homeodomain. Members of LHX family are found in the nucleus and act as transcription factors or cofactors. LHX proteins are critical for the development of specialized cells in multiple tissue types, including the nervous system, skeletal muscle, the heart, the kidneys, and endocrine organs, such as the pituitary gland and the pancreas. In mouse, Lmx1b functions in the developing limbs and eyes, the kidneys, the brain, and in cranial mesenchyme. The disruption of Lmx1b gene results kidney and limb defects. In the brain, Lmx1b is important for generation of mesencephalic dopamine neurons and the differentiation of serotonergic neurons. In the mouse eye, Lmx1b regulates anterior segment (cornea, iris, ciliary body, trabecular meshwork, and lens) development. As in other LIM domains, this domain family is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein. Length = 53

>gnl|CDD|188749 cd09363, LIM3_Enigma_like, The third LIM domain of Enigma-like family

 Score = 33.9 bits (78), Expect = 0.004
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRH 45
             WH  CF C+VC+  L    ++ + DK  C  H
Sbjct: 19 GHTWHDTCFVCAVCHVNLEGQTFYSKKDKPLCKNH 53

The third LIM domain of Enigma-like family: The Enigma LIM domain family is comprised of three members: Enigma, ENH, and Cypher (mouse)/ZASP (human). These subfamily members contain a single PDZ domain at the N-terminus and three LIM domains at the C-terminus. Enigma was initially characterized in humans and is expressed in multiple tissues, such as skeletal muscle, heart, bone, and brain. The third LIM domain specifically interacts with the insulin receptor and the second LIM domain interacts with the receptor tyrosine kinase Ret and the adaptor protein APS. Thus Enigma is implicated in signal transduction processes, such as mitogenic activity, insulin related actin organization, and glucose metabolism. The second member, ENH protein, was first identified in rat brain. It has been shown that ENH interacts with protein kinase D1 (PKD1) via its LIM domains and forms a complex with PKD1 and the alpha1C subunit of cardiac L-type voltage-gated calcium channel in rat neonatal cardiomyocytes. The N-terminal PDZ domain interacts with alpha-actinin at the Z-line. ZASP/Cypher is required for maintenance of Z-line structure during muscle contraction, but not required for Z-line assembly. In heart, Cypher/ZASP plays a structural role through its interaction with cytoskeletal Z-line proteins. In addition, there is increasing evidence that Cypher/ZASP also performs signaling functions. Studies reveal that Cypher/ZASP interacts with and directs PKC to the Z-line, where PKC phosphorylates downstream signaling targets. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 54

>gnl|CDD|188750 cd09364, LIM1_LIMK, The first LIM domain of LIMK (LIM domain Kinase )

 Score = 33.6 bits (77), Expect = 0.004
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHH 46
          N  WH  CF CSVC++ L +  YF +  KLYC + +
Sbjct: 18 NQDWHCDCFRCSVCSDSLSNW-YFEKDGKLYCRKDY 52

The first LIM domain of LIMK (LIM domain Kinase ): LIMK protein family is comprised of two members LIMK1 and LIMK2. LIMK contains two LIM domains, a PDZ domain and a kinase domain. LIMK is involved in the regulation of actin polymerization and microtubule disassembly. LIMK influences architecture of the actin cytoskeleton by regulating the activity of the cofilin family proteins cofilin1, cofilin2, and destrin. The mechanism of the activation is to phosphorylates cofilin on serine 3 and inactivates its actin-severing activity, and altering the rate of actin depolymerisation. LIMKs can function in both cytoplasm and nucleus and are expressed in all tissues. Both LIMK1 and LIMK2 can act in the nucleus to suppress Rac/Cdc42-dependent cyclin D1 expression. However, LIMK1 and LIMk2 have different cellular locations. While LIMK1 localizes mainly at focal adhesions, LIMK2 is found in cytoplasmic punctae, suggesting that they may have different cellular functions. The LIM domains of LIMK have been shown to play an important role in regulating kinase activity and likely also contribute to LIMK function by acting as sites of protein-to-protein interactions. All LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 53

>gnl|CDD|188730 cd09344, LIM1_FHL1, The first LIM domain of Four and a half LIM domains protein 1

 Score = 33.6 bits (77), Expect = 0.004
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 82  AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCS 123
           + ++ H+ ++WH  ++CF CA C   L   PF+ +   I C 
Sbjct: 12  SKELHHKNRYWH--ETCFRCAKCYKPLANEPFVAKDNKILCG 51

The first LIM domain of Four and a half LIM domains protein 1 (FHL1): FHL1 is heavily expressed in skeletal and cardiac muscles. It plays important roles in muscle growth, differentiation, and sarcomere assembly by acting as a modulator of transcription factors. Defects in FHL1 gene are responsible for a number of Muscular dystrophy-like muscle disorders. It has been detected that FHL1 binds to Myosin-binding protein C, regulating myosin filament formation and sarcomere assembly. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. . Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
KOG1701|consensus	468		99.91
KOG1701|consensus	468		99.88
KOG2272|consensus	332		99.83
KOG4577|consensus	383		99.74
KOG2272|consensus	332		99.69
KOG1703|consensus	479		99.68
KOG1044|consensus	670		99.61
KOG1703|consensus	479		99.59
KOG1044|consensus	670		99.5
PF00412	58	LIM: LIM domain; InterPro: IPR001781 Zinc finger (	99.35
KOG1700|consensus	200		99.29
PF00412	58	LIM: LIM domain; InterPro: IPR001781 Zinc finger (	99.18
KOG4577|consensus	383		98.58
smart00132	39	LIM Zinc-binding domain present in Lin-11, Isl-1,	98.42
smart00132	39	LIM Zinc-binding domain present in Lin-11, Isl-1,	97.58
KOG1700|consensus	200		97.08
KOG0490|consensus	235		96.95
KOG1702|consensus	264		96.53
KOG1702|consensus	264		96.06
PF08394	37	Arc_trans_TRASH: Archaeal TRASH domain; InterPro:	88.01
KOG2462|consensus	279		84.08
KOG0490|consensus	235		83.57
PF02069	52	Metallothio_Pro: Prokaryotic metallothionein; Inte	81.94

>KOG1701|consensus

Probab=99.91  E-value=2.9e-26  Score=190.53  Aligned_cols=120  Identities=23%  Similarity=0.522  Sum_probs=112.2

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCcee
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMS   86 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~   86 (168)
                      ..||++.||.+||+|..|++.|.++.||..|+++||+.||... ..+|..|+++|++.                   +|.
T Consensus       291 c~Am~~~fHv~CFtC~~C~r~L~Gq~FY~v~~k~~CE~cyq~t-lekC~~Cg~~I~d~-------------------iLr  350 (468)
T KOG1701|consen  291 VEAMDQLFHVQCFTCRTCRRQLAGQSFYQVDGKPYCEGCYQDT-LEKCNKCGEPIMDR-------------------ILR  350 (468)
T ss_pred             HHHhhhhhcccceehHhhhhhhccccccccCCcccchHHHHHH-HHHHhhhhhHHHHH-------------------HHH
Confidence            5899999999999999999999999999999999999999987 67999999999853                   699


Q ss_pred             eCCceeeCCCCceecCCCCccCCCCCceec-CCeeeecccccCCCCCCCCCCCCCCCCCCCCcc
Q psy327           87 HEGQHWHATDSCFCCATCSLSLLGRPFLPR-AGVIFCSIACSKGEPPTPSDSSGPGLRPQRPRK  149 (168)
Q Consensus        87 ~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~-dg~~~C~~~C~~~~~~~~~~~~~~~~~~~~~~~  149 (168)
                      |+|+.||+  .||+|..|.+.|+|..|+++ ++++||.+ +|.++|+.+|..|+++|+|..-..
T Consensus       351 A~GkayHp--~CF~Cv~C~r~ldgipFtvd~~n~v~Cv~-dfh~kfAPrCs~C~~PI~P~~G~~  411 (468)
T KOG1701|consen  351 ALGKAYHP--GCFTCVVCARCLDGIPFTVDSQNNVYCVP-DFHKKFAPRCSVCGNPILPRDGKD  411 (468)
T ss_pred             hcccccCC--CceEEEEeccccCCccccccCCCceeeeh-hhhhhcCcchhhccCCccCCCCCc
Confidence            99999999  99999999999999999975 99999996 888999999999999999986654

>KOG1701|consensus

Probab=99.88  E-value=2.2e-23  Score=173.46  Aligned_cols=113  Identities=26%  Similarity=0.636  Sum_probs=101.3

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceE-EECCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCce
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYF-YRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQM   85 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~-~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v   85 (168)
                      +.|+|+.||++||+|..|++.|++..|. ..++++||.+||++.|+++|+.|+++|++.+|...            ...|
T Consensus       349 LrA~GkayHp~CF~Cv~C~r~ldgipFtvd~~n~v~Cv~dfh~kfAPrCs~C~~PI~P~~G~~e------------tvRv  416 (468)
T KOG1701|consen  349 LRALGKAYHPGCFTCVVCARCLDGIPFTVDSQNNVYCVPDFHKKFAPRCSVCGNPILPRDGKDE------------TVRV  416 (468)
T ss_pred             HHhcccccCCCceEEEEeccccCCccccccCCCceeeehhhhhhcCcchhhccCCccCCCCCcc------------eEEE
Confidence            5799999999999999999999999996 48999999999999999999999999999888752            3358


Q ss_pred             eeCCceeeCCCCceecCCCCccCC----CCCceecCCeeeecccccCCCCCCC
Q psy327           86 SHEGQHWHATDSCFCCATCSLSLL----GRPFLPRAGVIFCSIACSKGEPPTP  134 (168)
Q Consensus        86 ~~~~~~~H~~~~CF~C~~C~~~l~----~~~f~~~dg~~~C~~~C~~~~~~~~  134 (168)
                      +++|+.||.  +||+|.+|+..|+    ++..|..||.++|+. |+.+.....
T Consensus       417 vamdr~fHv--~CY~CEDCg~~LS~e~e~qgCyPld~HllCk~-Ch~~Rl~~~  466 (468)
T KOG1701|consen  417 VAMDRDFHV--NCYKCEDCGLLLSSEEEGQGCYPLDGHLLCKT-CHLKRLQAG  466 (468)
T ss_pred             EEccccccc--cceehhhcCccccccCCCCcceeccCceeech-hhhhhhccc
Confidence            999999999  9999999999994    778999999999997 987765443

>KOG2272|consensus

Probab=99.83  E-value=2.8e-22  Score=157.33  Aligned_cols=133  Identities=20%  Similarity=0.454  Sum_probs=116.2

Q ss_pred             cCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccccCcccccc------------------------
Q psy327            8 AGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQ------------------------   63 (168)
Q Consensus         8 ~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~------------------------   63 (168)
                      ...|..||.+||+|+.|=.|+.++.||+.+|+.||+.||..+|+|.|.+|++.|.+                        
T Consensus        30 ns~ge~wH~~CFvCAQCf~pf~~g~~~efEgRkYCEhDF~~LfaPcC~kC~EFiiGrVikamnnSwHp~CF~Cd~Cn~~L  109 (332)
T KOG2272|consen   30 NSNGELWHEQCFVCAQCFRPFPDGIFYEFEGRKYCEHDFHVLFAPCCGKCGEFIIGRVIKAMNNSWHPACFRCDLCNKHL  109 (332)
T ss_pred             ccCchhhHHHHHHHHHhcCcCCCceeEEecCcccccccchhhhchhhcccccchhhHHHHhhccccCcccchhHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999871                        


Q ss_pred             --------------------------------------------cCCccc------------------------------
Q psy327           64 --------------------------------------------VGGHRT------------------------------   69 (168)
Q Consensus        64 --------------------------------------------~~g~~~------------------------------   69 (168)
                                                                  ..|+.|                              
T Consensus       110 ad~gf~rnqgr~LC~~Cn~k~Ka~~~g~YvC~KCh~~iD~~~l~fr~d~yH~yHFkCt~C~keL~sdaRevk~eLyClrC  189 (332)
T KOG2272|consen  110 ADQGFYRNQGRALCRECNQKEKAKGRGRYVCQKCHAHIDEQPLTFRGDPYHPYHFKCTTCGKELTSDAREVKGELYCLRC  189 (332)
T ss_pred             hhhhhHhhcchHHhhhhhhhhcccccceeehhhhhhhcccccccccCCCCCccceecccccccccchhhhhccceecccc
Confidence                                                        011111                              


Q ss_pred             -----cCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCCCCCCCC
Q psy327           70 -----RDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSGPGLR  143 (168)
Q Consensus        70 -----~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~~~~~~~  143 (168)
                           .|+|..|.++|++++|.++|++||.  ++|+|+.|.+++-|-..|++.|.+||.+ -|.+++...|-.|+.++-
T Consensus       190 hD~mgipiCgaC~rpIeervi~amgKhWHv--eHFvCa~CekPFlGHrHYEkkGlaYCe~-h~~qLfG~~CF~C~~~i~  265 (332)
T KOG2272|consen  190 HDKMGIPICGACRRPIEERVIFAMGKHWHV--EHFVCAKCEKPFLGHRHYEKKGLAYCET-HYHQLFGNLCFICNRVIG  265 (332)
T ss_pred             ccccCCcccccccCchHHHHHHHhccccch--hheeehhcCCcccchhhhhhcCchhHHH-HHHHHhhhhheecCCccC
Confidence                 3567777788999999999999999  9999999999999999999999999997 678888888887777664

>KOG4577|consensus

Probab=99.74  E-value=8.3e-20  Score=145.71  Aligned_cols=102  Identities=25%  Similarity=0.569  Sum_probs=89.3

Q ss_pred             cCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCceee
Q psy327            8 AGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSH   87 (168)
Q Consensus         8 ~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~   87 (168)
                      ..+++.||..|++|+.|..+|.. ..|.++|.+||+++|.++|+.+|..|++.|.+..-                 +-.|
T Consensus        50 Kvl~R~wHs~CLkCs~C~~qL~d-rCFsR~~s~yCkedFfKrfGTKCsaC~~GIpPtqV-----------------VRkA  111 (383)
T KOG4577|consen   50 KVLDRHWHSSCLKCSDCHDQLAD-RCFSREGSVYCKEDFFKRFGTKCSACQEGIPPTQV-----------------VRKA  111 (383)
T ss_pred             HHHhhhhhhhhcchhhhhhHHHH-HHhhcCCceeehHHHHHHhCCcchhhcCCCChHHH-----------------HHHh
Confidence            56799999999999999999977 56889999999999999999999999999987421                 3457


Q ss_pred             CCceeeCCCCceecCCCCccC-CCCCcee-cCCeeeecccccCC
Q psy327           88 EGQHWHATDSCFCCATCSLSL-LGRPFLP-RAGVIFCSIACSKG  129 (168)
Q Consensus        88 ~~~~~H~~~~CF~C~~C~~~l-~~~~f~~-~dg~~~C~~~C~~~  129 (168)
                      .+..||.  .||.|..|.+.| .|+.||+ .|+++.|+.|+...
T Consensus       112 qd~VYHl--~CF~C~iC~R~L~TGdEFYLmeD~rLvCK~DYE~A  153 (383)
T KOG4577|consen  112 QDFVYHL--HCFACFICKRQLATGDEFYLMEDARLVCKDDYETA  153 (383)
T ss_pred             hcceeeh--hhhhhHhhhcccccCCeeEEeccceeehhhhHHHH
Confidence            8999999  999999999999 7888885 59999999876543

>KOG2272|consensus

Probab=99.69  E-value=1.6e-18  Score=136.20  Aligned_cols=104  Identities=22%  Similarity=0.474  Sum_probs=95.3

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCcee
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMS   86 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~   86 (168)
                      +.|||+.||.+.|+|+.|.+|+-+-.-|++.|..||+.+|.++|+..|..|+.+|.+                   ++++
T Consensus       210 i~amgKhWHveHFvCa~CekPFlGHrHYEkkGlaYCe~h~~qLfG~~CF~C~~~i~G-------------------~vv~  270 (332)
T KOG2272|consen  210 IFAMGKHWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFICNRVIGG-------------------DVVS  270 (332)
T ss_pred             HHHhccccchhheeehhcCCcccchhhhhhcCchhHHHHHHHHhhhhheecCCccCc-------------------cHHH
Confidence            478999999999999999999988788999999999999999999999999999973                   3689


Q ss_pred             eCCceeeCCCCceecCCCCccC-CCCCceecCCeeeecccccCCCCC
Q psy327           87 HEGQHWHATDSCFCCATCSLSL-LGRPFLPRAGVIFCSIACSKGEPP  132 (168)
Q Consensus        87 ~~~~~~H~~~~CF~C~~C~~~l-~~~~f~~~dg~~~C~~~C~~~~~~  132 (168)
                      ++++.|-+  +||.|+.|++.| ....|++.|-+|.|++ ||.+.+.
T Consensus       271 al~KawCv--~cf~Cs~Cdkkl~~K~Kf~E~DmkP~CKk-Cy~rfp~  314 (332)
T KOG2272|consen  271 ALNKAWCV--ECFSCSTCDKKLTQKNKFYEFDMKPVCKK-CYDRFPL  314 (332)
T ss_pred             Hhhhhhcc--ccccccccccccccccceeeeccchHHHH-HHhhccH
Confidence            99999999  999999999999 5778999999999997 9987653

>KOG1703|consensus

Probab=99.68  E-value=1.1e-17  Score=145.18  Aligned_cols=116  Identities=24%  Similarity=0.489  Sum_probs=107.0

Q ss_pred             eccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCce
Q psy327            6 SRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQM   85 (168)
Q Consensus         6 ~~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v   85 (168)
                      .++++++.||+.+|.|..|+..+....|...+|.+||.+|+.+.+.++|.+|+.+|.+.                   .|
T Consensus       318 ~i~~~~~~~h~~~~~c~~~~~~~~~~~~~~~~g~~~c~~~~~~~~~p~C~~C~~~i~~~-------------------~v  378 (479)
T KOG1703|consen  318 VIVALGKEWHPEHFSCEVCAIVILDGGPRELDGKILCHECFHAPFRPNCKRCLLPILEE-------------------GV  378 (479)
T ss_pred             eEeeccccccccceeeccccccccCCCccccCCCccHHHHHHHhhCccccccCCchHHh-------------------Hh
Confidence            46899999999999999999999888888999999999999999999999999999842                   58


Q ss_pred             eeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCCCCCCCC
Q psy327           86 SHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSGPGLR  143 (168)
Q Consensus        86 ~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~~~~~~~  143 (168)
                      .++++.||+  +||.|..|+++|.+..|+..||.+||.. ++.+++.+.|..|...++
T Consensus       379 ~a~~~~wH~--~cf~C~~C~~~~~~~~~~~~~~~pyce~-~~~~~~~~~~~~~~~p~~  433 (479)
T KOG1703|consen  379 CALGRLWHP--ECFVCADCGKPLKNSSFFESDGEPYCED-HYKKLFTTKCDYCKKPVE  433 (479)
T ss_pred             hhccCeech--hceeeecccCCCCCCcccccCCccchhh-hHhhhccccchhccchhH
Confidence            888999999  9999999999999999999999999996 999999989888876654

>KOG1044|consensus

Probab=99.61  E-value=1.8e-16  Score=136.41  Aligned_cols=101  Identities=20%  Similarity=0.592  Sum_probs=92.4

Q ss_pred             eccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCce
Q psy327            6 SRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQM   85 (168)
Q Consensus         6 ~~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v   85 (168)
                      .++|+++.||..||+|..|+..|.+ .|..+||.+||+.||.+.|+.+|..|.+.|.+                   ++|
T Consensus       148 ~llald~qwhv~cfkc~~c~~vL~g-ey~skdg~pyce~dy~~~fgvkc~~c~~fisg-------------------kvL  207 (670)
T KOG1044|consen  148 ALLALDKQWHVSCFKCKSCSAVLNG-EYMSKDGVPYCEKDYQAKFGVKCEECEKFISG-------------------KVL  207 (670)
T ss_pred             eeeeeccceeeeeeehhhhcccccc-eeeccCCCcchhhhhhhhcCeehHHhhhhhhh-------------------hhh
Confidence            4689999999999999999999965 78999999999999999999999999999984                   379


Q ss_pred             eeCCceeeCCCCceecCCCCccC-CCCCceecCCeeeecccccCC
Q psy327           86 SHEGQHWHATDSCFCCATCSLSL-LGRPFLPRAGVIFCSIACSKG  129 (168)
Q Consensus        86 ~~~~~~~H~~~~CF~C~~C~~~l-~~~~f~~~dg~~~C~~~C~~~  129 (168)
                      .|.|++|||  .|-+|++|+..+ +|+.-|+.+..+|=. +|...
T Consensus       208 qag~kh~HP--tCARCsRCgqmF~eGEEMYlQGs~iWHP-~C~qa  249 (670)
T KOG1044|consen  208 QAGDKHFHP--TCARCSRCGQMFGEGEEMYLQGSEIWHP-DCKQA  249 (670)
T ss_pred             hccCcccCc--chhhhhhhccccccchheeeccccccCC-ccccc
Confidence            999999999  899999999999 899999999999976 47754

>KOG1703|consensus

Probab=99.59  E-value=3.2e-16  Score=136.14  Aligned_cols=102  Identities=26%  Similarity=0.654  Sum_probs=92.9

Q ss_pred             eccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCce
Q psy327            6 SRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQM   85 (168)
Q Consensus         6 ~~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v   85 (168)
                      .+.|+++.||++||+|..|+++|.+..|+..++.+||+.||.+++..+|..|..++.-  +.+               .+
T Consensus       377 ~v~a~~~~wH~~cf~C~~C~~~~~~~~~~~~~~~pyce~~~~~~~~~~~~~~~~p~~~--~~~---------------~i  439 (479)
T KOG1703|consen  377 GVCALGRLWHPECFVCADCGKPLKNSSFFESDGEPYCEDHYKKLFTTKCDYCKKPVEF--GSR---------------QI  439 (479)
T ss_pred             HhhhccCeechhceeeecccCCCCCCcccccCCccchhhhHhhhccccchhccchhHh--hhh---------------Hh
Confidence            3578899999999999999999999999999999999999999999999999998762  222               48


Q ss_pred             eeCCceeeCCCCceecCCCCccCCCCCceecCCeeeeccccc
Q psy327           86 SHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACS  127 (168)
Q Consensus        86 ~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~  127 (168)
                      .+++..||.  .||+|+.|.+.|.++.|+...++|+|.. ++
T Consensus       440 e~~~~~~h~--~~F~c~~c~~~l~~~~~~~~~~~p~c~~-~~  478 (479)
T KOG1703|consen  440 EADGSPFHG--DCFRCANCMKKLTKKTFFETLDKPLCQK-HF  478 (479)
T ss_pred             hccCccccc--cceehhhhhccccCCceeecCCcccccc-CC
Confidence            999999999  9999999999999999999999999996 43

>KOG1044|consensus

Probab=99.50  E-value=8.1e-15  Score=126.33  Aligned_cols=122  Identities=19%  Similarity=0.399  Sum_probs=91.0

Q ss_pred             eeccCCCCCCCCCCccccccccccCCCceE-EECCeeccccchHhhhccccccCcccccccCCccc-cCCcccccCCC-C
Q psy327            5 ASRAGPNSCWHPGCFTCSVCNELLVDLIYF-YRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRT-RDLNINYFSSL-P   81 (168)
Q Consensus         5 ~~~~a~~~~~H~~Cf~C~~C~~~L~~~~~~-~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~-~~~C~~C~~~i-~   81 (168)
                      .-+.++|+.||++||.|+.|+.++....-. .......|..|            .++.....+..+ ...|++|+..| .
T Consensus        78 evvsa~gktyh~~cf~cs~ck~pf~~g~~vt~~gk~~~c~~c------------~~~~~~~p~~~~~ps~cagc~~~lk~  145 (670)
T KOG1044|consen   78 EVVSTLGKTYHPKCFSCSTCKSPFKSGDKVTFSGKECLCQTC------------SQPMPVSPAESYGPSTCAGCGEELKN  145 (670)
T ss_pred             eeEecccceeccccceecccCCCCCCCCeeeecchhhhhhhh------------cCcccCCcccccCCccccchhhhhhc
Confidence            346899999999999999999999554333 33344555554            333222222333 45688888877 4


Q ss_pred             CCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCCCCCCC
Q psy327           82 AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSGPGL  142 (168)
Q Consensus        82 ~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~~~~~~  142 (168)
                      ++.+.|+++.||+  .||+|..|...|.|+ |+..||.+||.. +|.+.|..+|..|..-|
T Consensus       146 gq~llald~qwhv--~cfkc~~c~~vL~ge-y~skdg~pyce~-dy~~~fgvkc~~c~~fi  202 (670)
T KOG1044|consen  146 GQALLALDKQWHV--SCFKCKSCSAVLNGE-YMSKDGVPYCEK-DYQAKFGVKCEECEKFI  202 (670)
T ss_pred             cceeeeeccceee--eeeehhhhcccccce-eeccCCCcchhh-hhhhhcCeehHHhhhhh
Confidence            5679999999999  999999999999876 888999999997 78788888877665544

>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.35  E-value=4.4e-13  Score=83.96  Aligned_cols=55  Identities=22%  Similarity=0.572  Sum_probs=43.8

Q ss_pred             cccccCCCCCCc--eeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCC
Q psy327           73 NINYFSSLPAGQ--MSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGE  130 (168)
Q Consensus        73 C~~C~~~i~~~~--v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~  130 (168)
                      |..|.++|.+..  +.++|+.||+  +||+|..|+++|.+..|+..||++||.. |+.++
T Consensus         1 C~~C~~~I~~~~~~~~~~~~~~H~--~Cf~C~~C~~~l~~~~~~~~~~~~~C~~-c~~~~   57 (58)
T PF00412_consen    1 CARCGKPIYGTEIVIKAMGKFWHP--ECFKCSKCGKPLNDGDFYEKDGKPYCKD-CYQKR   57 (58)
T ss_dssp             BTTTSSBESSSSEEEEETTEEEET--TTSBETTTTCBTTTSSEEEETTEEEEHH-HHHHH
T ss_pred             CCCCCCCccCcEEEEEeCCcEEEc--cccccCCCCCccCCCeeEeECCEEECHH-HHhhh
Confidence            444555554333  3599999999  9999999999998888999999999996 77543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....

>KOG1700|consensus

Probab=99.29  E-value=1e-12  Score=102.33  Aligned_cols=130  Identities=17%  Similarity=0.352  Sum_probs=102.5

Q ss_pred             eeccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccccCccc---ccc-------cCC----c--c
Q psy327            5 ASRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV---RVQ-------VGG----H--R   68 (168)
Q Consensus         5 ~~~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~---I~~-------~~g----~--~   68 (168)
                      +.+...|..||+.||.|..|.+.|....+...++.+||+.+|...++++=..=++.   +..       ...    .  .
T Consensus        21 e~~~~~g~~~hk~c~~c~~~~k~l~~~~~~~~e~~~yc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (200)
T KOG1700|consen   21 EKVQKDGVDFHKECFKCEKCKKTLTLSGYSEHEGVPYCKNCHVAQFGPKGGGFGKGFQKAGGLGKDGKSLNESKPNQSAK  100 (200)
T ss_pred             HHHhccCcchhhhHHhccccccccccccccccccccccccchHhhhCcccccccccccccCCCCcccccccccccccchh
Confidence            34568899999999999999999999999999999999998777766654443332   110       000    0  0


Q ss_pred             c------cCCcccccCCCCC-CceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCC
Q psy327           69 T------RDLNINYFSSLPA-GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSD  136 (168)
Q Consensus        69 ~------~~~C~~C~~~i~~-~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~  136 (168)
                      +      ...|..|.+.++. +.+...+..||.  .||+|+.|+..|....+...+|.+||..+++..++...-.
T Consensus       101 ~~~~~g~~~~c~~c~k~vy~~Ek~~~~~~~~hk--~cfrc~~~~~~ls~~~~~~~~g~l~~~~~~~~~~~~~~~~  173 (200)
T KOG1700|consen  101 FQVFAGEKEKCARCQKTVYPLEKVTGNGLEFHK--SCFRCTHCGKKLSPKNYAALEGVLYCKHHFAQLFKGKGNY  173 (200)
T ss_pred             HHhhhccccccccccceeeehHHHhhhhhhhhh--hheeecccccccCCcchhhcCCccccchhhheeecCCCcc
Confidence            0      6789999999874 668899999999  9999999999999999999999999998777666554433

>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.18  E-value=6.7e-12  Score=78.52  Aligned_cols=43  Identities=30%  Similarity=0.718  Sum_probs=40.5

Q ss_pred             cCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhh
Q psy327            8 AGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETL   50 (168)
Q Consensus         8 ~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~   50 (168)
                      .++|+.||++||+|..|+++|.+..|+..||++||..||.++|
T Consensus        16 ~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~f   58 (58)
T PF00412_consen   16 KAMGKFWHPECFKCSKCGKPLNDGDFYEKDGKPYCKDCYQKRF   58 (58)
T ss_dssp             EETTEEEETTTSBETTTTCBTTTSSEEEETTEEEEHHHHHHHT
T ss_pred             EeCCcEEEccccccCCCCCccCCCeeEeECCEEECHHHHhhhC
Confidence            5899999999999999999998888999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....

>KOG4577|consensus

Probab=98.58  E-value=1.6e-09  Score=87.19  Aligned_cols=72  Identities=19%  Similarity=0.420  Sum_probs=57.9

Q ss_pred             CCcccccCCCCCC-ceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCCCCCCCCCCC
Q psy327           71 DLNINYFSSLPAG-QMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSGPGLRPQR  146 (168)
Q Consensus        71 ~~C~~C~~~i~~~-~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~~~~~~~~~~  146 (168)
                      |.|.+|.+.|.+. ++.+++++||.  .|++|+.|+.+|.. ..+.++|.+||+.| +-+.+.+.|..|..+|+|..
T Consensus        34 p~CagC~q~IlDrFilKvl~R~wHs--~CLkCs~C~~qL~d-rCFsR~~s~yCked-FfKrfGTKCsaC~~GIpPtq  106 (383)
T KOG4577|consen   34 PICAGCDQHILDRFILKVLDRHWHS--SCLKCSDCHDQLAD-RCFSREGSVYCKED-FFKRFGTKCSACQEGIPPTQ  106 (383)
T ss_pred             ccccchHHHHHHHHHHHHHhhhhhh--hhcchhhhhhHHHH-HHhhcCCceeehHH-HHHHhCCcchhhcCCCChHH
Confidence            4444444444433 58899999999  99999999999965 47779999999975 55778999999999999863

>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3

Probab=98.42  E-value=1.5e-07  Score=53.51  Aligned_cols=35  Identities=23%  Similarity=0.507  Sum_probs=27.1

Q ss_pred             cccccCCCCC--CceeeCCceeeCCCCceecCCCCccCC
Q psy327           73 NINYFSSLPA--GQMSHEGQHWHATDSCFCCATCSLSLL  109 (168)
Q Consensus        73 C~~C~~~i~~--~~v~~~~~~~H~~~~CF~C~~C~~~l~  109 (168)
                      |..|.+.|.+  ..+.+.++.||+  +||+|..|+++|.
T Consensus         2 C~~C~~~i~~~~~~~~~~~~~~H~--~Cf~C~~C~~~L~   38 (39)
T smart00132        2 CAGCGKPIRGGELVLRALGKVWHP--ECFKCSKCGKPLG   38 (39)
T ss_pred             ccccCCcccCCcEEEEeCCccccc--cCCCCcccCCcCc
Confidence            4445555443  358889999999  9999999999985

Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.

>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3

Probab=97.58  E-value=3.1e-05  Score=43.69  Aligned_cols=23  Identities=39%  Similarity=0.941  Sum_probs=20.8

Q ss_pred             ccCCCCCCCCCCccccccccccC
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLV   29 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~   29 (168)
                      +.++++.||++||+|..|+++|.
T Consensus        16 ~~~~~~~~H~~Cf~C~~C~~~L~   38 (39)
T smart00132       16 LRALGKVWHPECFKCSKCGKPLG   38 (39)
T ss_pred             EEeCCccccccCCCCcccCCcCc
Confidence            56789999999999999999985

Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.

>KOG1700|consensus

Probab=97.08  E-value=0.00024  Score=55.43  Aligned_cols=67  Identities=19%  Similarity=0.420  Sum_probs=51.3

Q ss_pred             CcccccCCCC-CCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCCCCCC
Q psy327           72 LNINYFSSLP-AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSGPG  141 (168)
Q Consensus        72 ~C~~C~~~i~-~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~~~~~  141 (168)
                      .|..|++.|+ .+.+...|..||+  .||+|..|.+.|....+...++.+||.. |+-..+.+...+=+..
T Consensus         9 kc~~c~k~vy~~e~~~~~g~~~hk--~c~~c~~~~k~l~~~~~~~~e~~~yc~~-~~~~~~~~~~~~~~~~   76 (200)
T KOG1700|consen    9 KCNACGKTVYFVEKVQKDGVDFHK--ECFKCEKCKKTLTLSGYSEHEGVPYCKN-CHVAQFGPKGGGFGKG   76 (200)
T ss_pred             hhhhccCcchHHHHHhccCcchhh--hHHhcccccccccccccccccccccccc-chHhhhCccccccccc
Confidence            4555555554 3456788999999  9999999999998888999999999996 7666666555544443

>KOG0490|consensus

Probab=96.95  E-value=0.00016  Score=56.77  Aligned_cols=98  Identities=22%  Similarity=0.458  Sum_probs=77.0

Q ss_pred             cCCCCCCCCCCccccccccccC--CCceEEECCeeccccchHh--hhccccccCcccccccCCccccCCcccccCCCCCC
Q psy327            8 AGPNSCWHPGCFTCSVCNELLV--DLIYFYRGDKLYCGRHHAE--TLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAG   83 (168)
Q Consensus         8 ~a~~~~~H~~Cf~C~~C~~~L~--~~~~~~~~g~~yC~~cy~~--~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~   83 (168)
                      ..++..||..|+.|..|...|.  ...|.. +|..||..+|..  .+..+|..|...|..++                 .
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~d~~~~~~~~~rr~rt~~~~~ql~-----------------~   74 (235)
T KOG0490|consen   13 RVLDRYWHASCLKCAECDNPLGVGDTCFSK-DGSIYCKRDYQREFKFSKRCARCKFTISQLD-----------------E   74 (235)
T ss_pred             hcccHHHHHHHHhhhhhcchhccCCCcccC-CCcccccccchhhhhccccccCCCCCcCHHH-----------------H
Confidence            3447889999999999999997  555555 999999999998  77789999998886432                 1


Q ss_pred             ceeeCCceeeCCCCceecCCCCccC-CCCCceecCC-eeeecccc
Q psy327           84 QMSHEGQHWHATDSCFCCATCSLSL-LGRPFLPRAG-VIFCSIAC  126 (168)
Q Consensus        84 ~v~~~~~~~H~~~~CF~C~~C~~~l-~~~~f~~~dg-~~~C~~~C  126 (168)
                      +..+..++ |.  .||.|..|...+ .+..+.+.+. +..|.++.
T Consensus        75 ler~f~~~-h~--Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r  116 (235)
T KOG0490|consen   75 LERAFEKV-HL--PCFACRECLALLLTGDEFRVQVWFQNRRAKDR  116 (235)
T ss_pred             HHHhhcCC-Cc--CccchHHHHhhcCCCCeeeeehhhhhhcHhhh
Confidence            34555666 87  899999999876 6777776644 99998743

>KOG1702|consensus

Probab=96.53  E-value=0.00026  Score=54.99  Aligned_cols=59  Identities=15%  Similarity=0.335  Sum_probs=46.1

Q ss_pred             CcccccCCCCC-CceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCC
Q psy327           72 LNINYFSSLPA-GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPT  133 (168)
Q Consensus        72 ~C~~C~~~i~~-~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~  133 (168)
                      .|..|++.++. +.|.-+++.||.  .||+|..|+.+|.-..|--.|.++||.. .|.+..++
T Consensus         6 n~~~cgk~vYPvE~v~cldk~whk--~cfkce~c~mtlnmKnyKgy~kkpycn~-hYpkq~at   65 (264)
T KOG1702|consen    6 NREDCGKTVYPVEEVKCLDKVWHK--QCFKCEVCGMTLNMKNYKGYDKKPYCNP-HYPKQVAT   65 (264)
T ss_pred             hhhhhccccccHHHHhhHHHHHHH--HhheeeeccCChhhhhccccccCCCcCc-ccccceee
Confidence            45566666543 458889999999  9999999999998888877899999997 55554433

>KOG1702|consensus

Probab=96.06  E-value=0.00054  Score=53.25  Aligned_cols=44  Identities=30%  Similarity=0.580  Sum_probs=38.5

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhh
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETL   50 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~   50 (168)
                      +.-+++.||..||+|..|+-+|.-.+|-..|.++||..+|-+..
T Consensus        20 v~cldk~whk~cfkce~c~mtlnmKnyKgy~kkpycn~hYpkq~   63 (264)
T KOG1702|consen   20 VKCLDKVWHKQCFKCEVCGMTLNMKNYKGYDKKPYCNPHYPKQV   63 (264)
T ss_pred             HhhHHHHHHHHhheeeeccCChhhhhccccccCCCcCcccccce
Confidence            34578899999999999999998888888999999999997653

>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators

Probab=88.01  E-value=0.19  Score=28.54  Aligned_cols=29  Identities=17%  Similarity=0.431  Sum_probs=18.9

Q ss_pred             cccCCCCCC--ceeeCCceeeCCCCceecCCCCccC
Q psy327           75 NYFSSLPAG--QMSHEGQHWHATDSCFCCATCSLSL  108 (168)
Q Consensus        75 ~C~~~i~~~--~v~~~~~~~H~~~~CF~C~~C~~~l  108 (168)
                      -|++.|.++  ++...++.||     |.|..|...|
T Consensus         3 ~CG~~I~~eP~~~k~~~~~y~-----fCC~tC~~~f   33 (37)
T PF08394_consen    3 YCGGEITGEPIVVKIGNKVYY-----FCCPTCLSQF   33 (37)
T ss_pred             ccCCcccCCEEEEEECCeEEE-----EECHHHHHHH
Confidence            344444443  3566789999     6888887655

It is thought to function as a metal-sensing regulatory module [].

>KOG2462|consensus

Probab=84.08  E-value=0.75  Score=37.47  Aligned_cols=96  Identities=13%  Similarity=0.155  Sum_probs=55.7

Q ss_pred             CCCCCccccccccccCCCceEEECCeeccccchHhhhccccccCcccccccCCccc-------cCCcccccCCCCCCcee
Q psy327           14 WHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRT-------RDLNINYFSSLPAGQMS   86 (168)
Q Consensus        14 ~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~-------~~~C~~C~~~i~~~~v~   86 (168)
                      --...++|..|++.+.+..-..+-.+..|..+-  .-+..|..|++..+.++...-       .-.|..|+|...---|.
T Consensus       126 ~~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s--~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLL  203 (279)
T KOG2462|consen  126 AKHPRYKCPECGKSYSTSSNLSRHKQTHRSLDS--KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLL  203 (279)
T ss_pred             ccCCceeccccccccccccccchhhcccccccc--cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHh
Confidence            345688999999999776555666677666553  225678888877664321111       23577777653210011


Q ss_pred             eCCceeeCCCCceecCCCCccCCCC
Q psy327           87 HEGQHWHATDSCFCCATCSLSLLGR  111 (168)
Q Consensus        87 ~~~~~~H~~~~CF~C~~C~~~l~~~  111 (168)
                      -.--.-|..+.-|.|..|++.|.++
T Consensus       204 QGHiRTHTGEKPF~C~hC~kAFADR  228 (279)
T KOG2462|consen  204 QGHIRTHTGEKPFSCPHCGKAFADR  228 (279)
T ss_pred             hcccccccCCCCccCCcccchhcch
Confidence            1112234445678888888777433

>KOG0490|consensus

Probab=83.57  E-value=0.31  Score=37.96  Aligned_cols=55  Identities=24%  Similarity=0.429  Sum_probs=41.1

Q ss_pred             eeeCCceeeCCCCceecCCCCccCC--CCCceecCCeeeecccccC-CCCCCCCCCCCCCC
Q psy327           85 MSHEGQHWHATDSCFCCATCSLSLL--GRPFLPRAGVIFCSIACSK-GEPPTPSDSSGPGL  142 (168)
Q Consensus        85 v~~~~~~~H~~~~CF~C~~C~~~l~--~~~f~~~dg~~~C~~~C~~-~~~~~~~~~~~~~~  142 (168)
                      +.+.+..||.  .|..|..|...|.  ...|.. +|.+||..+... ..+...+..|...+
T Consensus        12 l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~d~~~~~~~~~rr~rt~~~~   69 (235)
T KOG0490|consen   12 LRVLDRYWHA--SCLKCAECDNPLGVGDTCFSK-DGSIYCKRDYQREFKFSKRCARCKFTI   69 (235)
T ss_pred             hhcccHHHHH--HHHhhhhhcchhccCCCcccC-CCcccccccchhhhhccccccCCCCCc
Confidence            5666999998  9999999999996  555666 999999986554 14455566555554

>PF02069 Metallothio_Pro: Prokaryotic metallothionein; InterPro: IPR000518 Metallothioneins (MT) are small proteins that bind heavy metals, such as zinc, copper, cadmium and nickel

Probab=81.94  E-value=0.8  Score=27.95  Aligned_cols=32  Identities=31%  Similarity=0.804  Sum_probs=21.9

Q ss_pred             ecCCCCccCCCCCceecCCeeeecccccCCCC
Q psy327          100 CCATCSLSLLGRPFLPRAGVIFCSIACSKGEP  131 (168)
Q Consensus       100 ~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~  131 (168)
                      -|..|...+....-+..||+.||...|....+
T Consensus         9 aC~~C~C~V~~~~Ai~~dGk~YCS~aCA~gH~   40 (52)
T PF02069_consen    9 ACPSCSCVVSEEEAIQKDGKYYCSEACANGHP   40 (52)
T ss_dssp             SSTT----B-TTTSEESSS-EESSHHHHHTSS
T ss_pred             cCCCCEeEECchHhHHhCCEeeecHHHhccCC
Confidence            47788888887888999999999999988763

They have a high content of cysteine residues that bind the metal ions through clusters of thiolate bonds [, , ]. An empirical classification into three classes was proposed by Kojima [], with class III MTs including atypical polypeptides composed of gamma-glutamylcysteinyl units. Class I and class II MTs (the proteinaceous sequences) have now been grouped into families of phylogenetically-related and thus alignable sequences. The MT superfamily is subdivided into families, subfamilies, subgroups, and isolated isoforms and alleles. The metallothionein superfamily comprises all polypeptides that resemble equine renal metallothionein in several respects [], e.g., low molecular weight; high metal content; amino acid composition with high Cys and low aromatic residue content; unique sequence with characteristic distribution of cysteines, and spectroscopic manifestations indicative of metal thiolate clusters. A MT family subsumes MTs that share particular sequence-specific features and are thought to be evolutionarily related. Fifteen MT families have been characterised, each family being identified by its number and its taxonomic range. Family 14 consists of prokaryota MTs. Its members are recognised by the sequence pattern K-C-A-C-x(2)-C-L-C.The taxonomic range of the members extends to cyanobacteria. Known characteristics are: 53 to 56 AAs; 9 conserved Cys; one conserved tyrosine residue; one conserved histidine residue; contain other unusual residues. ; GO: 0046872 metal ion binding; PDB: 1JJD_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	168
2xqn_T	126	Complex Of The 2nd And 3rd Lim Domains Of Tes With		4e-09
2iyb_E	65	Structure Of Complex Between The 3rd Lim Domain Of		3e-06

>pdb|2XQN|T Chain T, Complex Of The 2nd And 3rd Lim Domains Of Tes With The Evh1 Domain Of Mena And The N-Terminal Domain Of Actin-Like Protein Arp7a Length = 126

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 9   GPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHR 68
             N  WH   F C  C+ +L   IY    DK  C        KP C   +   V  G H 
Sbjct: 21  AENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVC--------KP-CYVKNHAVVCQGCHN 71
Query: 69  TRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSK 128
             D  +         ++++    WHA+  CF C+ CS  L+G+ F+P  G++FCS+ C K
Sbjct: 72  AIDPEVQ--------RVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKK 123

>pdb|2IYB|E Chain E, Structure Of Complex Between The 3rd Lim Domain Of Tes And The Evh1 Domain Of Mena Length = 65

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 84  QMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSK 128
           ++++    WHA+  CF C+ CS  L+G+ F+P  G++FCS+ C K
Sbjct: 18  RVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKK 62

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
2xqn_T	126	Testin, TESS; metal-binding protein, cytoskeleton,	2e-22
2xqn_T	126	Testin, TESS; metal-binding protein, cytoskeleton,	3e-05
2cup_A	101	Skeletal muscle LIM-protein 1; four and half LIM d	5e-18
2cup_A	101	Skeletal muscle LIM-protein 1; four and half LIM d	1e-04
2iyb_E	65	Testin, TESS, TES; LIM domain, SH3-binding, tumour	2e-17
1b8t_A	192	Protein (CRP1); LIM domain, muscle differentiation	5e-14
1b8t_A	192	Protein (CRP1); LIM domain, muscle differentiation	4e-08
1x62_A	79	C-terminal LIM domain protein 1; PDZ and LIM domai	7e-13
2egq_A	77	FHL1 protein; LIM domain, four and A half LIM doma	3e-12
2egq_A	77	FHL1 protein; LIM domain, four and A half LIM doma	5e-06
2rgt_A	169	Fusion of LIM/homeobox protein LHX3, linker, INSU	6e-12
2rgt_A	169	Fusion of LIM/homeobox protein LHX3, linker, INSU	1e-07
2cuq_A	80	Four and A half LIM domains 3; structural genomics	9e-12
2cuq_A	80	Four and A half LIM domains 3; structural genomics	2e-07
2jtn_A	182	LIM domain-binding protein 1, LIM/homeobox protein	1e-11
2jtn_A	182	LIM domain-binding protein 1, LIM/homeobox protein	2e-04
1x64_A	89	Alpha-actinin-2 associated LIM protein; LIM domain	3e-11
2ehe_A	82	Four and A half LIM domains 3; FHL-3, skeletal mus	6e-11
2ehe_A	82	Four and A half LIM domains 3; FHL-3, skeletal mus	2e-08
1x63_A	82	Skeletal muscle LIM-protein 1; LIM domain, four an	8e-11
1x63_A	82	Skeletal muscle LIM-protein 1; LIM domain, four an	3e-08
2xjy_A	131	Rhombotin-2; oncoprotein, T-cell leukemia, proto-o	2e-10
2xjy_A	131	Rhombotin-2; oncoprotein, T-cell leukemia, proto-o	8e-06
1x68_A	76	FHL5 protein; four-and-A-half LIM protein 5, zinc	3e-10
1x68_A	76	FHL5 protein; four-and-A-half LIM protein 5, zinc	4e-05
1rut_X	188	Flinc4, fusion protein of LMO4 protein and LIM dom	4e-10
1a7i_A	81	QCRP2 (LIM1); LIM domain containing proteins, meta	8e-10
2cur_A	69	Skeletal muscle LIM-protein 1; four and A half LIM	1e-08
2cur_A	69	Skeletal muscle LIM-protein 1; four and A half LIM	8e-05
2dar_A	90	PDZ and LIM domain protein 5; enigma homolog prote	1e-08
2dar_A	90	PDZ and LIM domain protein 5; enigma homolog prote	3e-05
2d8z_A	70	Four and A half LIM domains 2; skeletal muscle LIM	2e-08
2d8z_A	70	Four and A half LIM domains 2; skeletal muscle LIM	2e-04
1x4k_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	3e-08
1x4k_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	8e-05
1x61_A	72	Thyroid receptor interacting protein 6; LIM domain	4e-08
1x61_A	72	Thyroid receptor interacting protein 6; LIM domain	7e-04
1x3h_A	80	Leupaxin; paxillin family, protein-protein interac	4e-08
1x3h_A	80	Leupaxin; paxillin family, protein-protein interac	1e-06
1wyh_A	72	SLIM 2, skeletal muscle LIM-protein 2; structural	4e-08
1wyh_A	72	SLIM 2, skeletal muscle LIM-protein 2; structural	5e-05
2d8x_A	70	Protein pinch; LIM domain, pinch protein, structur	1e-07
1x6a_A	81	LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc fi	1e-07
2dlo_A	81	Thyroid receptor-interacting protein 6; LIM domain	2e-07
1x4l_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	3e-07
1x4l_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	3e-07
1m3v_A	122	FLIN4, fusion of the LIM interacting domain of LDB	5e-07
2d8y_A	91	Eplin protein; LIM domain, epithelial protein LOST	7e-07
1g47_A	77	Pinch protein; LIM domain, Zn finger, cell adhesio	9e-07
1g47_A	77	Pinch protein; LIM domain, Zn finger, cell adhesio	9e-04
1nyp_A	66	Pinch protein; LIM domain, protein recognition, ce	1e-06
1nyp_A	66	Pinch protein; LIM domain, protein recognition, ce	3e-04
1j2o_A	114	FLIN2, fusion of rhombotin-2 and LIM domain-bindin	1e-06
2dj7_A	80	Actin-binding LIM protein 3; LIM domain, Zn bindin	2e-06
1iml_A	76	CRIP, cysteine rich intestinal protein; metal-bind	4e-06
1iml_A	76	CRIP, cysteine rich intestinal protein; metal-bind	5e-04
3f6q_B	72	LIM and senescent cell antigen-like-containing dom	1e-05
2cu8_A	76	Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein	1e-05
2l3k_A	123	Rhombotin-2, linker, LIM domain-binding protein 1;	3e-05
2l4z_A	123	DNA endonuclease RBBP8, LIM domain transcription L	7e-05
1v6g_A	81	Actin binding LIM protein 2; LIM domain, zinc bind	3e-04
2cor_A	79	Pinch protein; LIM domain, particularly interestin	3e-04

>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens} Length = 126

 Score = 85.9 bits (213), Expect = 2e-22
 Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 17/115 (14%)

Query: 14  WHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLN 73
           WH   F C  C+ +L   IY    DK  C   + +     C  C      +         
Sbjct: 26  WHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNA---IDPE------ 76

Query: 74  INYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSK 128
                     ++++    WHA+  CF C+ CS  L+G+ F+P  G++FCS+ C K
Sbjct: 77  --------VQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKK 123

>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens} Length = 126

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 20/74 (27%)

Query: 49  TLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSL 108
           + KPRC+ CDE+             I       A     E Q+WH     FCC  C   L
Sbjct: 1   SEKPRCAGCDEL-------------IFSNEYTQA-----ENQNWHL--KHFCCFDCDSIL 40

Query: 109 LGRPFLPRAGVIFC 122
            G  ++       C
Sbjct: 41  AGEIYVMVNDKPVC 54

>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 Length = 101

 Score = 73.6 bits (181), Expect = 5e-18
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 23/96 (23%)

Query: 11  NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTR 70
           N  WH  CF C+ C   L +  +  + +K+ C +       P+C  C +           
Sbjct: 26  NRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKA---------- 75

Query: 71  DLNINYFSSLPAGQ--MSHEGQHWHATDSCFCCATC 104
                    + AG   + ++G  WH    CF   + 
Sbjct: 76  ---------IVAGDQNVEYKGTVWH--KDCFSGPSS 100

>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 Length = 101

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 85  MSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFC 122
           + ++ + WH   +CF CA C   L    F+ +   I C
Sbjct: 22  VHYKNRFWHD--TCFRCAKCLHPLANETFVAKDNKILC 57

>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens} Length = 65

 Score = 71.4 bits (175), Expect = 2e-17
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 82  AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSK 128
             ++++    WHA+  CF C+ CS  L+G+ F+P  G++FCS+ C K
Sbjct: 16  VQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKK 62

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A Length = 192

 Score = 65.8 bits (160), Expect = 5e-14
 Identities = 31/142 (21%), Positives = 45/142 (31%), Gaps = 32/142 (22%)

Query: 11  NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTR 70
            S +H  CF C VC + L        GD++YC   + +   P+          +   +  
Sbjct: 27  GSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGE 86

Query: 71  DLNINYFSS------------------------------LPAGQMSHEGQHWHATDSCFC 100
            L I Y                                   A ++   G+ WH   SCF 
Sbjct: 87  SLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWH--KSCFR 144

Query: 101 CATCSLSLLGRPFLPRAGVIFC 122
           CA C  SL       + G I+C
Sbjct: 145 CAKCGKSLESTTLADKDGEIYC 166

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A Length = 192

 Score = 49.6 bits (118), Expect = 4e-08
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 11  NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDE 59
              WH  CF C+ C + L       +  ++YC   +A+   P+     +
Sbjct: 135 GKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQ 183

>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 79

 Score = 59.8 bits (145), Expect = 7e-13
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56
          +   HP C+ C+ C   L    +F+  D++YC +H  E +    S 
Sbjct: 34 DRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSSG 79

>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 57.9 bits (140), Expect = 3e-12
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 16/87 (18%)

Query: 37  GDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATD 96
           G     G  +   +  +C+ C       G   +               +++EGQ WH  D
Sbjct: 1   GSSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSV--------------VAYEGQSWH--D 44

Query: 97  SCFCCATCSLSLLGRPFLPRAGVIFCS 123
            CF C  CS++L  + F+     ++C 
Sbjct: 45  YCFHCKKCSVNLANKRFVFHQEQVYCP 71

>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 41.7 bits (98), Expect = 5e-06
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAE 48
             WH  CF C  C+  L +  + +  +++YC     +
Sbjct: 39 GQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76

>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A Length = 169

 Score = 59.5 bits (144), Expect = 6e-12
 Identities = 25/116 (21%), Positives = 38/116 (32%), Gaps = 26/116 (22%)

Query: 11  NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTR 70
           +  WH  C  CS C+  L +   F RG+ +YC     +    +C+AC             
Sbjct: 26  DRHWHSKCLKCSDCHVPLAE-RCFSRGESVYCKDDFFKRFGTKCAACQLG---------- 74

Query: 71  DLNINYFSSLPAGQ--MSHEGQHWHATDSCFCCATCSLSLLG--RPFLPRAGVIFC 122
                    +P  Q     +   +H    CF C  C   L      +L     + C
Sbjct: 75  ---------IPPTQVVRRAQDFVYHLH--CFACVVCKRQLATGDEFYLMEDSRLVC 119

>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A Length = 169

 Score = 47.9 bits (114), Expect = 1e-07
 Identities = 16/105 (15%), Positives = 23/105 (21%), Gaps = 23/105 (21%)

Query: 11  NSCWHPGCFTCSVCNELLV--DLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHR 68
           +  +H  CF C VC   L   D  Y     +L C   +    +                 
Sbjct: 86  DFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGSGGSGG--------- 136

Query: 69  TRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPF 113
                     S     M       H  D         +     P+
Sbjct: 137 ----------SGGGTPMVAASPERH--DGGLQANPVEVQSYQPPW 169

>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 80

 Score = 57.0 bits (138), Expect = 9e-12
 Identities = 19/86 (22%), Positives = 27/86 (31%), Gaps = 21/86 (24%)

Query: 37  GDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATD 96
           G     G  +     PRC+ C +                    L  G +++  Q WH   
Sbjct: 1   GSSGSSGPCYENKFAPRCARCSKT-------------------LTQGGVTYRDQPWHR-- 39

Query: 97  SCFCCATCSLSLLGRPFLPRAGVIFC 122
            C  C  C   L G+ F  R    +C
Sbjct: 40  ECLVCTGCQTPLAGQQFTSRDEDPYC 65

>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 80

 Score = 45.4 bits (108), Expect = 2e-07
 Identities = 11/43 (25%), Positives = 15/43 (34%)

Query: 14 WHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56
          WH  C  C+ C   L    +  R +  YC     E      S+
Sbjct: 37 WHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79

>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus} Length = 182

 Score = 58.8 bits (142), Expect = 1e-11
 Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 26/117 (22%)

Query: 10  PNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRT 69
            +  WH  C  CS C+  L +   F RG+ +YC     +    +C+AC            
Sbjct: 79  LDRHWHSKCLKCSDCHVPLAE-RCFSRGESVYCKDDFFKRFGTKCAACQLG--------- 128

Query: 70  RDLNINYFSSLPAGQMSHE--GQHWHATDSCFCCATCSLSLLG--RPFLPRAGVIFC 122
                     +P  Q+        +H    CF C  C   L      +L     + C
Sbjct: 129 ----------IPPTQVVRRAQDFVYHLH--CFACVVCKRQLATGDEFYLMEDSRLVC 173

>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus} Length = 182

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 2/38 (5%)

Query: 11  NSCWHPGCFTCSVCNELLV--DLIYFYRGDKLYCGRHH 46
           +  +H  CF C VC   L   D  Y     +L C   +
Sbjct: 140 DFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 177

>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3 Length = 89

 Score = 56.0 bits (135), Expect = 3e-11
 Identities = 15/46 (32%), Positives = 19/46 (41%)

Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56
          +   HP CF C+ CN  L    YF+   +LYC  H         S 
Sbjct: 44 DKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSSG 89

>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 82

 Score = 54.8 bits (132), Expect = 6e-11
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 19/100 (19%)

Query: 37  GDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATD 96
           G     G  +  T    C+ C ++   +G                  ++ +E +H+H  +
Sbjct: 1   GSSGSSGPCYDNTFANTCAECQQL---IGHDS--------------RELFYEDRHFH--E 41

Query: 97  SCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSD 136
            CF C  C  SL   PF  +   + C+          PS 
Sbjct: 42  GCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS 81

>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 82

 Score = 48.3 bits (115), Expect = 2e-08
 Identities = 11/43 (25%), Positives = 17/43 (39%)

Query: 14 WHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56
          +H GCF C  C   L D  +  +  +L C   +        S+
Sbjct: 39 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS 81

>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 82

 Score = 54.3 bits (131), Expect = 8e-11
 Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 19/87 (21%)

Query: 37  GDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATD 96
           G     G+       P+C  C +  +  G                   + ++G  WH   
Sbjct: 1   GSSGSSGKCTTREDSPKCKGCFKA-IVAGDQN----------------VEYKGTVWH--K 41

Query: 97  SCFCCATCSLSLLGRPFLPRAGVIFCS 123
            CF C+ C   +    F P+    +C 
Sbjct: 42  DCFTCSNCKQVIGTGSFFPKGEDFYCV 68

>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 82

 Score = 47.7 bits (114), Expect = 3e-08
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56
           + WH  CFTCS C +++    +F +G+  YC   H        S+
Sbjct: 36 GTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPSS 81

>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A Length = 131

 Score = 55.1 bits (133), Expect = 2e-10
 Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 28/120 (23%)

Query: 10  PNSCWHPGCFTCSVCNELLVDLI--YFYRGDKLYCGRHHAETL--KPRCSACDEVRVQVG 65
            +  WH  C +C +C   L ++    +Y+  +  C R +         C++CD+      
Sbjct: 21  IDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKR----- 75

Query: 66  GHRTRDLNINYFSSLPAGQMSHE--GQHWHATDSCFCCATCSLSLL-GRPFLPRAGVIFC 122
                         + A +M+     + +H    CF CA C      G  +L     I C
Sbjct: 76  --------------IRAYEMTMRVKDKVYHLE--CFKCAACQKHFCVGDRYLLINSDIVC 119

>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A Length = 131

 Score = 42.0 bits (99), Expect = 8e-06
 Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 11  NSCWHPGCFTCSVCNELLVDLIYFY-RGDKLYCGRHHAETLK 51
           +  +H  CF C+ C +       +      + C +   E  K
Sbjct: 87  DKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTK 128

>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 76

 Score = 52.9 bits (127), Expect = 3e-10
 Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 18/88 (20%)

Query: 52  PRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGR 111
             C AC +    + G +                +  +   WH    CF C  CS+SL+G+
Sbjct: 6   SGCVACSKPISGLTGAK---------------FICFQDSQWH--SECFNCGKCSVSLVGK 48

Query: 112 PFLPRAGVIFCSIACSKGEPPTPSDSSG 139
            FL +   IFC   C  G     S  S 
Sbjct: 49  GFLTQNKEIFCQ-KCGSGMDTDISGPSS 75

>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 76

 Score = 39.1 bits (91), Expect = 4e-05
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 14 WHPGCFTCSVCNELLVDLIYFYRGDKLYC 42
          WH  CF C  C+  LV   +  +  +++C
Sbjct: 31 WHSECFNCGKCSVSLVGKGFLTQNKEIFC 59

>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B Length = 188

 Score = 55.0 bits (132), Expect = 4e-10
 Identities = 35/157 (22%), Positives = 51/157 (32%), Gaps = 37/157 (23%)

Query: 11  NSCWHPGCFTCSVCNELLVDLI--YFYRGDKLYCGRHHAET--LKPRCSACDEVRVQVGG 66
           +S WH  C  CS C   L D+    + +   + C   +         CSAC +       
Sbjct: 25  DSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQ------- 77

Query: 67  HRTRDLNINYFSSLPAGQ--MSHEGQHWHATDSCFCCATCSLSL-LGRPFLPRAGVIFC- 122
                       S+PA +  M  +G  +H    CF C+TC   L  G  F    G +FC 
Sbjct: 78  ------------SIPASELVMRAQGNVYHL--KCFTCSTCRNRLVPGDRFHYINGSLFCE 123

Query: 123 --------SIACSKGEPPTPSDSSGPGLRPQRPRKSS 151
                   +   + G       S G  +    P    
Sbjct: 124 HDRPTALINGHLNSGGSGGSGGSGGDVMVVGEPTLMG 160

>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A Length = 81

 Score = 52.0 bits (125), Expect = 8e-10
 Identities = 10/46 (21%), Positives = 18/46 (39%)

Query: 14 WHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDE 59
          +H  CF C VC + L          ++YC   + +   P+     +
Sbjct: 30 FHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQ 75

>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 69

 Score = 48.5 bits (116), Expect = 1e-08
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCS 55
          +  WH  CF C  C++ L    +    D+ YC   +   +    S
Sbjct: 24 DQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSS 68

>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 69

 Score = 38.1 bits (89), Expect = 8e-05
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 21/71 (29%)

Query: 52  PRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGR 111
             C  C++                    + +G ++++ Q WHA   CF C TCS  L G+
Sbjct: 6   SGCVKCNKA-------------------ITSGGITYQDQPWHA--DCFVCVTCSKKLAGQ 44

Query: 112 PFLPRAGVIFC 122
            F       +C
Sbjct: 45  RFTAVEDQYYC 55

>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 90

 Score = 48.6 bits (116), Expect = 1e-08
 Identities = 10/46 (21%), Positives = 17/46 (36%)

Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56
             WHP  F C+ C   +  + +      LYC   + +      S+
Sbjct: 44 GKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89

>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 90

 Score = 39.7 bits (93), Expect = 3e-05
 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 22/91 (24%)

Query: 33  YFYRGDKLYCGRH-HAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQH 91
              +   +    H  A    P C+ C++V                   +    +   G+ 
Sbjct: 6   SGDQDTLVQRAEHIPAGKRTPMCAHCNQV-------------------IRGPFLVALGKS 46

Query: 92  WHATDSCFCCATCSLSLLGRPFLPRAGVIFC 122
           WH     F CA C  ++    F+   G ++C
Sbjct: 47  WHP--EEFNCAHCKNTMAYIGFVEEKGALYC 75

>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 70

 Score = 47.7 bits (114), Expect = 2e-08
 Identities = 12/46 (26%), Positives = 17/46 (36%)

Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56
             WH  CF C+ C + L    +  R D  YC     +      S+
Sbjct: 24 EQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69

>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 70

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 21/71 (29%)

Query: 52  PRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGR 111
             C  C +                    +  G +++  Q WH    CF C  C   L G+
Sbjct: 6   SGCVQCKKP-------------------ITTGGVTYREQPWHKE--CFVCTACRKQLSGQ 44

Query: 112 PFLPRAGVIFC 122
            F  R    +C
Sbjct: 45  RFTARDDFAYC 55

>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 47.4 bits (113), Expect = 3e-08
 Identities = 9/46 (19%), Positives = 19/46 (41%)

Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56
           S WH  CF C  C + +    +  + ++ +C   + +      S+
Sbjct: 26 GSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71

>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 38.1 bits (89), Expect = 8e-05
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 85  MSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFC 122
           M ++G  WH  ++CF C  C   +  + F+P+    FC
Sbjct: 22  MEYKGSSWH--ETCFICHRCQQPIGTKSFIPKDNQNFC 57

>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 47.1 bits (112), Expect = 4e-08
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSAC 57
          +  +H GCF CS C   L    ++    + YC   +  TL+    + 
Sbjct: 26 DRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE-SGPSS 71

>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 35.5 bits (82), Expect = 7e-04
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 89  GQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFC 122
            + +H    CF C+TC   L G+ F       +C
Sbjct: 26  DRVFHV--GCFVCSTCRAQLRGQHFYAVERRAYC 57

>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 80

 Score = 47.3 bits (113), Expect = 4e-08
 Identities = 11/46 (23%), Positives = 18/46 (39%)

Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56
          ++ WHP CF C  C        +F    + +C  H+        S+
Sbjct: 34 DTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79

>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 80

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 17/86 (19%), Positives = 22/86 (25%), Gaps = 21/86 (24%)

Query: 37  GDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATD 96
           G     G+       P+C  C+                     +    +S     WH   
Sbjct: 1   GSSGSSGKDFLAMFSPKCGGCNRP-------------------VLENYLSAMDTVWHPE- 40

Query: 97  SCFCCATCSLSLLGRPFLPRAGVIFC 122
            CF C  C  S     F    G  FC
Sbjct: 41  -CFVCGDCFTSFSTGSFFELDGRPFC 65

>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 47.0 bits (112), Expect = 4e-08
 Identities = 11/46 (23%), Positives = 15/46 (32%)

Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56
             WH  CF CS C + L    +       YC   +        S+
Sbjct: 26 GQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71

>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 38.9 bits (91), Expect = 5e-05
 Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 19/72 (26%)

Query: 51  KPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLG 110
              CSAC E  V  G  +                + + GQ WH    CF C+ C   L  
Sbjct: 5   SSGCSACGET-VMPGSRK----------------LEYGGQTWHEH--CFLCSGCEQPLGS 45

Query: 111 RPFLPRAGVIFC 122
           R F+P  G  +C
Sbjct: 46  RSFVPDKGAHYC 57

>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 70

 Score = 45.9 bits (109), Expect = 1e-07
 Identities = 14/45 (31%), Positives = 20/45 (44%)

Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCS 55
          N+ WHP CF C +C E+L D+ +     +  C   H        S
Sbjct: 24 NNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS 68

>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 81

 Score = 45.9 bits (109), Expect = 1e-07
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 11 NSCWHPGCFTCSVCNELLV--DLIYFYRGDKLYCGRHHAETLKPRCSA 56
             +HP CF C  C  ++   D     +   LYCG+ H E +    S 
Sbjct: 34 EFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSSG 81

>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 81

 Score = 45.1 bits (107), Expect = 2e-07
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 11 NSCWHPGCFTCSVCNELLVDLIYFY-RGDKLYCGRHHAETLKPRCSA 56
             +HPGCFTC VC+  L  + +      +++C            S+
Sbjct: 34 GKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80

>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 44.8 bits (106), Expect = 3e-07
 Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 17/77 (22%)

Query: 47  AETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSL 106
             +    C+ C      +GG +                +S E + WH  + CF C  CSL
Sbjct: 1   GSSGSSGCAGCTNPISGLGGTK---------------YISFEERQWH--NDCFNCKKCSL 43

Query: 107 SLLGRPFLPRAGVIFCS 123
           SL+GR FL     I C 
Sbjct: 44  SLVGRGFLTERDDILCP 60

>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 44.8 bits (106), Expect = 3e-07
 Identities = 11/44 (25%), Positives = 15/44 (34%)

Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRC 54
             WH  CF C  C+  LV   +    D + C     +   P  
Sbjct: 28 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71

>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3 Length = 122

 Score = 45.4 bits (107), Expect = 5e-07
 Identities = 15/101 (14%), Positives = 27/101 (26%), Gaps = 13/101 (12%)

Query: 10  PNSCWHPGCFTCSVCNELLVDL--IYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGH 67
            +S WH  C  CS C   L D+    + +   + C   +        +      +  GG 
Sbjct: 24  MDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGD 83

Query: 68  RTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSL 108
                          G+ +  G  +   D        +   
Sbjct: 84  VMV-----------VGEPTLMGGEFGDEDERLITRLENTQF 113

>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 91

 Score = 44.5 bits (105), Expect = 7e-07
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 14 WHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACD 58
          +H  CF CS CN  L    Y     ++YC  H  +  K + +  +
Sbjct: 38 FHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 82

>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 77

 Score = 43.5 bits (103), Expect = 9e-07
 Identities = 8/42 (19%), Positives = 16/42 (38%)

Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKP 52
             +H  CF C+ C +   + +++    + YC         P
Sbjct: 32 GELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAP 73

>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 77

 Score = 35.5 bits (82), Expect = 9e-04
 Identities = 12/81 (14%), Positives = 18/81 (22%), Gaps = 19/81 (23%)

Query: 42  CGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCC 101
                       C  C                           ++  G+ +H  + CF C
Sbjct: 2   SEFMANALASATCERCKG-GFAPAEKI----------------VNSNGELYH--EQCFVC 42

Query: 102 ATCSLSLLGRPFLPRAGVIFC 122
           A C        F    G  +C
Sbjct: 43  AQCFQQFPEGLFYEFEGRKYC 63

>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B Length = 66

 Score = 43.0 bits (102), Expect = 1e-06
 Identities = 9/38 (23%), Positives = 16/38 (42%)

Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAE 48
             WH   F C+ C +  +   ++ R    YC  H+ +
Sbjct: 24 GKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQ 61

>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B Length = 66

 Score = 36.5 bits (85), Expect = 3e-04
 Identities = 16/71 (22%), Positives = 22/71 (30%), Gaps = 21/71 (29%)

Query: 52  PRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGR 111
           P C AC                      +    ++  G+ WH     F CA C    LG 
Sbjct: 6   PICGACRRP-------------------IEGRVVNAMGKQWHV--EHFVCAKCEKPFLGH 44

Query: 112 PFLPRAGVIFC 122
               R G+ +C
Sbjct: 45  RHYERKGLAYC 55

>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3 Length = 114

 Score = 44.3 bits (104), Expect = 1e-06
 Identities = 13/101 (12%), Positives = 27/101 (26%), Gaps = 19/101 (18%)

Query: 10  PNSCWHPGCFTCSVCNELLVDL--IYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGH 67
            +  WH  C +C +C   L ++    +Y+  +  C R +               V     
Sbjct: 22  IDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSGGDV----- 76

Query: 68  RTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSL 108
                       +  G+ +  G  +   D        +   
Sbjct: 77  ------------MVVGEPTLMGGEFGDEDERLITRLENTQF 105

>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 80

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56
          +  WH  CF C  C+ +L    Y  +    YC   +        S+
Sbjct: 35 DKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79

>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3 Length = 76

 Score = 42.0 bits (99), Expect = 4e-06
 Identities = 10/48 (20%), Positives = 14/48 (29%), Gaps = 1/48 (2%)

Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETL-KPRCSAC 57
             WH  C  C  C + L    +     K YC       +  P+    
Sbjct: 20 GKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGR 67

>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3 Length = 76

 Score = 36.2 bits (84), Expect = 5e-04
 Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 20/75 (26%)

Query: 52  PRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGR 111
           P+C  CD+                      A +++  G+ WH    C  C  C  +L   
Sbjct: 1   PKCPKCDK------------------EVYFAERVTSLGKDWHR--PCLKCEKCGKTLTSG 40

Query: 112 PFLPRAGVIFCSIAC 126
                 G  +C+  C
Sbjct: 41  GHAEHEGKPYCNHPC 55

>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B Length = 72

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 7/38 (18%), Positives = 15/38 (39%)

Query: 11 NSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAE 48
             +H  CF C+ C +   + +++    + YC      
Sbjct: 32 GELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQM 69

>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 76

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 14 WHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETL-KPRCSA 56
          WH  C  C  C++ L    +     K +C +    TL     S+
Sbjct: 32 WHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75

>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens} Length = 123

 Score = 39.7 bits (92), Expect = 7e-05
 Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 2/40 (5%)

Query: 11  NSCWHPGCFTCSVCNELLVD--LIYFYRGDKLYCGRHHAE 48
           +S WH  C  CS C   L D     + +   + C   +  
Sbjct: 81  DSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR 120

>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 81

 Score = 36.7 bits (85), Expect = 3e-04
 Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 1/37 (2%)

Query: 11 NSCWHPGCFTCSVCNELLVDLIYFY-RGDKLYCGRHH 46
             +HP CF C+VC             G +  C +  
Sbjct: 34 GKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCS 70

>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 79

 Score = 36.7 bits (85), Expect = 3e-04
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 14 WHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA 56
          +HP  F C+ C + L          +LYC   H +      S+
Sbjct: 37 YHPDHFNCANCGKEL-TADARELKGELYCLPCHDKMGVSGPSS 78

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
1b8t_A	192	Protein (CRP1); LIM domain, muscle differentiation	99.95
2xqn_T	126	Testin, TESS; metal-binding protein, cytoskeleton,	99.94
2xjy_A	131	Rhombotin-2; oncoprotein, T-cell leukemia, proto-o	99.92
1rut_X	188	Flinc4, fusion protein of LMO4 protein and LIM dom	99.91
2rgt_A	169	Fusion of LIM/homeobox protein LHX3, linker, INSU	99.91
2jtn_A	182	LIM domain-binding protein 1, LIM/homeobox protein	99.89
2cup_A	101	Skeletal muscle LIM-protein 1; four and half LIM d	99.84
2ehe_A	82	Four and A half LIM domains 3; FHL-3, skeletal mus	99.78
2cuq_A	80	Four and A half LIM domains 3; structural genomics	99.77
1x3h_A	80	Leupaxin; paxillin family, protein-protein interac	99.75
1m3v_A	122	FLIN4, fusion of the LIM interacting domain of LDB	99.74
2dlo_A	81	Thyroid receptor-interacting protein 6; LIM domain	99.73
2egq_A	77	FHL1 protein; LIM domain, four and A half LIM doma	99.73
1x63_A	82	Skeletal muscle LIM-protein 1; LIM domain, four an	99.72
1x6a_A	81	LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc fi	99.71
1x68_A	76	FHL5 protein; four-and-A-half LIM protein 5, zinc	99.65
1v6g_A	81	Actin binding LIM protein 2; LIM domain, zinc bind	99.65
1j2o_A	114	FLIN2, fusion of rhombotin-2 and LIM domain-bindin	99.64
1iml_A	76	CRIP, cysteine rich intestinal protein; metal-bind	99.6
2cup_A	101	Skeletal muscle LIM-protein 1; four and half LIM d	99.58
2d8z_A	70	Four and A half LIM domains 2; skeletal muscle LIM	99.58
2cur_A	69	Skeletal muscle LIM-protein 1; four and A half LIM	99.57
2iyb_E	65	Testin, TESS, TES; LIM domain, SH3-binding, tumour	99.56
1x4k_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	99.55
1wyh_A	72	SLIM 2, skeletal muscle LIM-protein 2; structural	99.55
1wig_A	73	KIAA1808 protein; LIM domain, zinc finger, metal-b	99.55
1nyp_A	66	Pinch protein; LIM domain, protein recognition, ce	99.54
2dar_A	90	PDZ and LIM domain protein 5; enigma homolog prote	99.53
1x4l_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	99.53
2xqn_T	126	Testin, TESS; metal-binding protein, cytoskeleton,	99.53
1a7i_A	81	QCRP2 (LIM1); LIM domain containing proteins, meta	99.52
2d8x_A	70	Protein pinch; LIM domain, pinch protein, structur	99.51
2dj7_A	80	Actin-binding LIM protein 3; LIM domain, Zn bindin	99.51
2cu8_A	76	Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein	99.5
1m3v_A	122	FLIN4, fusion of the LIM interacting domain of LDB	99.49
2jtn_A	182	LIM domain-binding protein 1, LIM/homeobox protein	99.48
2cor_A	79	Pinch protein; LIM domain, particularly interestin	99.48
1iml_A	76	CRIP, cysteine rich intestinal protein; metal-bind	99.48
2xjy_A	131	Rhombotin-2; oncoprotein, T-cell leukemia, proto-o	99.45
1x61_A	72	Thyroid receptor interacting protein 6; LIM domain	99.44
1x64_A	89	Alpha-actinin-2 associated LIM protein; LIM domain	99.44
1a7i_A	81	QCRP2 (LIM1); LIM domain containing proteins, meta	99.44
1g47_A	77	Pinch protein; LIM domain, Zn finger, cell adhesio	99.43
1x62_A	79	C-terminal LIM domain protein 1; PDZ and LIM domai	99.43
2l3k_A	123	Rhombotin-2, linker, LIM domain-binding protein 1;	99.42
2d8y_A	91	Eplin protein; LIM domain, epithelial protein LOST	99.42
2co8_A	82	NEDD9 interacting protein with calponin homology a	99.41
1wyh_A	72	SLIM 2, skeletal muscle LIM-protein 2; structural	99.41
2d8z_A	70	Four and A half LIM domains 2; skeletal muscle LIM	99.4
1x68_A	76	FHL5 protein; four-and-A-half LIM protein 5, zinc	99.4
2cur_A	69	Skeletal muscle LIM-protein 1; four and A half LIM	99.4
1j2o_A	114	FLIN2, fusion of rhombotin-2 and LIM domain-bindin	99.39
1x4k_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	99.38
2dj7_A	80	Actin-binding LIM protein 3; LIM domain, Zn bindin	99.38
2dar_A	90	PDZ and LIM domain protein 5; enigma homolog prote	99.37
1nyp_A	66	Pinch protein; LIM domain, protein recognition, ce	99.36
2ehe_A	82	Four and A half LIM domains 3; FHL-3, skeletal mus	99.36
2cu8_A	76	Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein	99.36
2rgt_A	169	Fusion of LIM/homeobox protein LHX3, linker, INSU	99.36
1g47_A	77	Pinch protein; LIM domain, Zn finger, cell adhesio	99.35
3f6q_B	72	LIM and senescent cell antigen-like-containing dom	99.35
1x4l_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	99.34
2cuq_A	80	Four and A half LIM domains 3; structural genomics	99.33
1x64_A	89	Alpha-actinin-2 associated LIM protein; LIM domain	99.33
1x3h_A	80	Leupaxin; paxillin family, protein-protein interac	99.32
2l4z_A	123	DNA endonuclease RBBP8, LIM domain transcription L	99.32
1rut_X	188	Flinc4, fusion protein of LMO4 protein and LIM dom	99.3
2dlo_A	81	Thyroid receptor-interacting protein 6; LIM domain	99.3
1x63_A	82	Skeletal muscle LIM-protein 1; LIM domain, four an	99.3
1x62_A	79	C-terminal LIM domain protein 1; PDZ and LIM domai	99.29
2d8x_A	70	Protein pinch; LIM domain, pinch protein, structur	99.29
2cor_A	79	Pinch protein; LIM domain, particularly interestin	99.28
2d8y_A	91	Eplin protein; LIM domain, epithelial protein LOST	99.27
1x61_A	72	Thyroid receptor interacting protein 6; LIM domain	99.25
1b8t_A	192	Protein (CRP1); LIM domain, muscle differentiation	99.24
1wig_A	73	KIAA1808 protein; LIM domain, zinc finger, metal-b	99.22
2l3k_A	123	Rhombotin-2, linker, LIM domain-binding protein 1;	99.2
1x6a_A	81	LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc fi	99.16
3f6q_B	72	LIM and senescent cell antigen-like-containing dom	99.15
2co8_A	82	NEDD9 interacting protein with calponin homology a	99.12
2egq_A	77	FHL1 protein; LIM domain, four and A half LIM doma	99.08
2iyb_E	65	Testin, TESS, TES; LIM domain, SH3-binding, tumour	99.06
2l4z_A	123	DNA endonuclease RBBP8, LIM domain transcription L	99.06
1v6g_A	81	Actin binding LIM protein 2; LIM domain, zinc bind	98.74
1zfo_A	31	LAsp-1; LIM domain, zinc-finger, metal-binding pro	97.3
1jjd_A	55	Metallothionein, SMTA; zinc finger, zinc cluster,	83.44
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	82.09

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A

Probab=99.95  E-value=5.3e-28  Score=185.61  Aligned_cols=133  Identities=25%  Similarity=0.442  Sum_probs=115.4

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccccCcccccccC---------------------
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVG---------------------   65 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~---------------------   65 (168)
                      +.|+|+.||++||+|..|+++|.+..|+.+||++||+.||.++|+++|.+|++....+.                     
T Consensus        23 v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~~~~~~~~~~~~~~~p~~  102 (192)
T 1b8t_A           23 VQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTN  102 (192)
T ss_dssp             EEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred             EEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCCcccccccccccccCCCC
Confidence            46899999999999999999999989999999999999999999999999876431100                     


Q ss_pred             --Cccc------cCCcccccCCCC-CCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCC
Q psy327           66 --GHRT------RDLNINYFSSLP-AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSD  136 (168)
Q Consensus        66 --g~~~------~~~C~~C~~~i~-~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~  136 (168)
                        ...|      .+.|..|+++|. .+.|.++++.||+  +||+|..|+++|.+..|+..||++||+. |+.+++++.|.
T Consensus       103 ~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~g~~yC~~-cy~~~f~~kc~  179 (192)
T 1b8t_A          103 PNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHK--SCFRCAKCGKSLESTTLADKDGEIYCKG-CYAKNFGPKGF  179 (192)
T ss_dssp             CCCCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECT--TTCBCTTTCCBCCSSSEEEETTEEEEHH-HHHHHTCCCCC
T ss_pred             cCccccccccCCCCcCCCCCCEecCcEEEecCCCccch--hcCCccccCCCCCCCcccccCCEEeCHH-HHHHhcCCcCC
Confidence              0000      245999999997 5678999999999  9999999999998888999999999996 99999999999


Q ss_pred             CCCCCC
Q psy327          137 SSGPGL  142 (168)
Q Consensus       137 ~~~~~~  142 (168)
                      +|+.++
T Consensus       180 ~C~~~~  185 (192)
T 1b8t_A          180 GFGQGA  185 (192)
T ss_dssp             CCCCCC
T ss_pred             CCCCcc
Confidence            999874

>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}

Probab=99.94  E-value=8.6e-28  Score=172.65  Aligned_cols=104  Identities=30%  Similarity=0.705  Sum_probs=95.5

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCcee
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMS   86 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~   86 (168)
                      +.|+|+.||++||+|..|+++|.++.|+.+||++||+.||.++|+++|..|+++|.+.  .               .+|.
T Consensus        19 ~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~--~---------------~~~~   81 (126)
T 2xqn_T           19 TQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPE--V---------------QRVT   81 (126)
T ss_dssp             EEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTT--S---------------CEEE
T ss_pred             EeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcC--c---------------eEEE
Confidence            5789999999999999999999998999999999999999999999999999999852  1               2589


Q ss_pred             eCCceee--CCCCceecCCCCccCCCCCceecCCeeeecccccCC
Q psy327           87 HEGQHWH--ATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKG  129 (168)
Q Consensus        87 ~~~~~~H--~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~  129 (168)
                      ++++.||  +  +||+|..|+++|.+..|++.||++||..+|++.
T Consensus        82 a~~~~~H~~~--~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~  124 (126)
T 2xqn_T           82 YNNFSWHAST--ECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKR  124 (126)
T ss_dssp             ETTEEEESST--TTSBCTTTCCBCTTSEEEEETTEEESSHHHHHS
T ss_pred             CCCCEeeCCC--CCcCcCCCCCccCCCeeEeECCEEcchHHhhhh
Confidence            9999999  9  999999999999999999999999999767643

>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A

Probab=99.92  E-value=8.4e-26  Score=163.16  Aligned_cols=104  Identities=22%  Similarity=0.493  Sum_probs=93.2

Q ss_pred             ccCCCCCCCCCCccccccccccC--CCceEEECCeeccccchHhhhcc--ccccCcccccccCCccccCCcccccCCCCC
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLV--DLIYFYRGDKLYCGRHHAETLKP--RCSACDEVRVQVGGHRTRDLNINYFSSLPA   82 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~--~~~~~~~~g~~yC~~cy~~~~~~--~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~   82 (168)
                      +.|+|+.||++||+|+.|+++|.  +..|+.+||++||+.||.++|++  +|..|+++|.+.+                 
T Consensus        18 ~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e-----------------   80 (131)
T 2xjy_A           18 LKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE-----------------   80 (131)
T ss_dssp             EEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTS-----------------
T ss_pred             EEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccc-----------------
Confidence            57899999999999999999996  36899999999999999999999  9999999997521                 


Q ss_pred             CceeeCCceeeCCCCceecCCCCccC-CCCCceecCCeeeecccccCCC
Q psy327           83 GQMSHEGQHWHATDSCFCCATCSLSL-LGRPFLPRAGVIFCSIACSKGE  130 (168)
Q Consensus        83 ~~v~~~~~~~H~~~~CF~C~~C~~~l-~~~~f~~~dg~~~C~~~C~~~~  130 (168)
                      .+|.++++.||+  +||+|..|+++| .+..|++.||++||.. |+.++
T Consensus        81 ~~~~a~~~~~H~--~CF~C~~C~~~L~~g~~f~~~~~~~~C~~-c~~~~  126 (131)
T 2xjy_A           81 MTMRVKDKVYHL--ECFKCAACQKHFCVGDRYLLINSDIVCEQ-DIYEW  126 (131)
T ss_dssp             EEEEETTEEEEG--GGCBCTTTCCBCCTTCEEEEETTEEEEGG-GHHHH
T ss_pred             eeEeeCCceECc--cCcccCCCCCCCCCCCEEEEECCEEEcHH-HHHHH
Confidence            158899999999  999999999999 6888999999999996 77554

>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B

Probab=99.91  E-value=1.5e-25  Score=171.53  Aligned_cols=114  Identities=26%  Similarity=0.501  Sum_probs=95.9

Q ss_pred             ccCCCCCCCCCCccccccccccCC--CceEEECCeeccccchHhhhcc--ccccCcccccccCCccccCCcccccCCCCC
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVD--LIYFYRGDKLYCGRHHAETLKP--RCSACDEVRVQVGGHRTRDLNINYFSSLPA   82 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~--~~~~~~~g~~yC~~cy~~~~~~--~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~   82 (168)
                      +.|+++.||++||+|..|+++|..  ..|+.+||++||+.||.++|++  +|..|+++|.+.  .               
T Consensus        21 ~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~--e---------------   83 (188)
T 1rut_X           21 LYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS--E---------------   83 (188)
T ss_dssp             EEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTT--S---------------
T ss_pred             EEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccC--c---------------
Confidence            578999999999999999999975  6899999999999999999998  799999999742  1               


Q ss_pred             CceeeCCceeeCCCCceecCCCCccC-CCCCceecCCeeeecccccCCCCCCCCCCCCC
Q psy327           83 GQMSHEGQHWHATDSCFCCATCSLSL-LGRPFLPRAGVIFCSIACSKGEPPTPSDSSGP  140 (168)
Q Consensus        83 ~~v~~~~~~~H~~~~CF~C~~C~~~l-~~~~f~~~dg~~~C~~~C~~~~~~~~~~~~~~  140 (168)
                      .+|.++++.||+  +||+|..|+++| .+..|+..++++||.. |+.+.+...+-..+.
T Consensus        84 ~~i~a~~~~~H~--~CF~C~~C~~~L~~g~~f~~~~g~~yC~~-c~~~~~~~~~~~~g~  139 (188)
T 1rut_X           84 LVMRAQGNVYHL--KCFTCSTCRNRLVPGDRFHYINGSLFCEH-DRPTALINGHLNSGG  139 (188)
T ss_dssp             EEEEETTEEECG--GGCBCTTTCCBCCTTCEEEEETTEEEEGG-GCCTTTC--------
T ss_pred             EEEEcCCCEEeC--CCCeECCCCCCCCCCCeEEEECCeEECHH-HHHHHhcccccccCC
Confidence            158899999999  999999999999 5778999999999996 999888877765444

>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A

Probab=99.91  E-value=1.8e-25  Score=168.30  Aligned_cols=109  Identities=23%  Similarity=0.524  Sum_probs=92.9

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCcee
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMS   86 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~   86 (168)
                      +.|+|+.||++||+|..|+++|.+.. +.+||++||+.||.++|+++|..|+++|.+.  ..               ++.
T Consensus        22 ~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~--~~---------------v~~   83 (169)
T 2rgt_A           22 LKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPPT--QV---------------VRR   83 (169)
T ss_dssp             EECSSCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHSCBCTTTCCBCCTT--SE---------------EEE
T ss_pred             EEECCcEEccccCccCCCCCcCCCCC-cccCCeeeecccccccccccccccccccCCC--cE---------------EEE
Confidence            46899999999999999999998866 5899999999999999999999999999752  11               468


Q ss_pred             eCCceeeCCCCceecCCCCccCC-CCCce-ecCCeeeecccccCCCCCCCCC
Q psy327           87 HEGQHWHATDSCFCCATCSLSLL-GRPFL-PRAGVIFCSIACSKGEPPTPSD  136 (168)
Q Consensus        87 ~~~~~~H~~~~CF~C~~C~~~l~-~~~f~-~~dg~~~C~~~C~~~~~~~~~~  136 (168)
                      ++++.||+  +||+|..|+++|. |..|+ ..||++||.. |+.+.....++
T Consensus        84 a~~~~~H~--~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~-c~~~~~~~~~~  132 (169)
T 2rgt_A           84 AQDFVYHL--HCFACVVCKRQLATGDEFYLMEDSRLVCKA-DYETAKQGGSG  132 (169)
T ss_dssp             ETTEEEEG--GGCBCTTTCCBCCTTCEEEECTTSCEEEHH-HHHHHHHCC--
T ss_pred             cCCceEee--CCCcCCCCCCCCCCCCceEEccCCeEECHH-HHHHHhhccCC
Confidence            99999999  9999999999995 66775 4699999996 88776555443

>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}

Probab=99.89  E-value=5.8e-24  Score=161.79  Aligned_cols=102  Identities=24%  Similarity=0.552  Sum_probs=89.1

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCcee
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMS   86 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~   86 (168)
                      +.|+|+.||++||+|..|+++|.+.. |.+||++||+.||.++|+++|..|+++|.+..                 .++.
T Consensus        76 ~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~-----------------~v~~  137 (182)
T 2jtn_A           76 LKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQ-----------------VVRR  137 (182)
T ss_dssp             EEETTEEECSSTTSCTTTCCCCSSCC-EEETTEEECHHHHHHTTSCCCTTTCCCCCSSC-----------------CCCE
T ss_pred             EEecCCeEccccCccCCCCCccCCCc-eeECCEeeecCccccccccccccCCCccCCCc-----------------eEEe
Confidence            46899999999999999999998866 57999999999999999999999999998521                 1478


Q ss_pred             eCCceeeCCCCceecCCCCccCC-CCCce-ecCCeeeecccccCC
Q psy327           87 HEGQHWHATDSCFCCATCSLSLL-GRPFL-PRAGVIFCSIACSKG  129 (168)
Q Consensus        87 ~~~~~~H~~~~CF~C~~C~~~l~-~~~f~-~~dg~~~C~~~C~~~  129 (168)
                      ++++.||+  +||+|..|+++|. |..|+ ..||++||.. |+.+
T Consensus       138 a~~~~~H~--~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~-cy~~  179 (182)
T 2jtn_A          138 AQDFVYHL--HCFACVVCKRQLATGDEFYLMEDSRLVCKA-DYET  179 (182)
T ss_dssp             ETTEECCT--TTCCCTTTCCCCCTTCEEEECTTSCEECHH-HHHH
T ss_pred             cCCCCEEe--CCCcCCCCCCCCCCCCceEEccCCEEECHH-HHHH
Confidence            99999999  9999999999995 66676 4699999996 7753

>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3

Probab=99.84  E-value=4.9e-22  Score=137.23  Aligned_cols=80  Identities=25%  Similarity=0.664  Sum_probs=73.4

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCcee
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMS   86 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~   86 (168)
                      +.|+|+.||++||+|..|+++|.+..|+.+||++||+.||.++|+++|..|+++|.+  |+               .+|.
T Consensus        22 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~--~~---------------~~~~   84 (101)
T 2cup_A           22 VHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVA--GD---------------QNVE   84 (101)
T ss_dssp             EEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCS--SS---------------CEEE
T ss_pred             EEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCcccc--CC---------------eEEE
Confidence            578899999999999999999988889999999999999999999999999999984  21               2589


Q ss_pred             eCCceeeCCCCceecCCCC
Q psy327           87 HEGQHWHATDSCFCCATCS  105 (168)
Q Consensus        87 ~~~~~~H~~~~CF~C~~C~  105 (168)
                      ++|+.||+  +||+|..|+
T Consensus        85 a~~~~~H~--~CF~C~~C~  101 (101)
T 2cup_A           85 YKGTVWHK--DCFSGPSSG  101 (101)
T ss_dssp             SSSCEEET--TTCCCTTCC
T ss_pred             eCCcchHH--hCCCCCCCC
Confidence            99999999  999999995

>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=1e-19  Score=121.19  Aligned_cols=81  Identities=23%  Similarity=0.502  Sum_probs=72.6

Q ss_pred             CCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceec
Q psy327           37 GDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPR  116 (168)
Q Consensus        37 ~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~  116 (168)
                      +|++||++||.++|+++|..|+++|.+.                 +.+|.++++.||+  +||+|+.|+++|.+..|+..
T Consensus         1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~-----------------~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~f~~~   61 (82)
T 2ehe_A            1 GSSGSSGPCYDNTFANTCAECQQLIGHD-----------------SRELFYEDRHFHE--GCFRCCRCQRSLADEPFTCQ   61 (82)
T ss_dssp             CCCCCCCCCCCCCCSCBCTTTCCBCCSS-----------------CCBCCCSSCCCBT--TTSBCTTTCCBCSSCCEEEE
T ss_pred             CCceechhHhCcccCCcCccCCCccccC-----------------cEEEEeCCccccc--cCCeecCCCCccCCCccEee
Confidence            6899999999999999999999999831                 1258899999999  99999999999999899999


Q ss_pred             CCeeeecccccCCCCCCCCCC
Q psy327          117 AGVIFCSIACSKGEPPTPSDS  137 (168)
Q Consensus       117 dg~~~C~~~C~~~~~~~~~~~  137 (168)
                      +|+|||.. |+.+++++.|.+
T Consensus        62 ~~~~~C~~-c~~~~~~~~C~~   81 (82)
T 2ehe_A           62 DSELLCND-CYCSAFSSGPSS   81 (82)
T ss_dssp             TTEEEETT-TSSCCGGGSSCC
T ss_pred             CCEEECHH-HHhhhcCCCCCC
Confidence            99999996 999998888763

>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.77  E-value=1.1e-19  Score=120.29  Aligned_cols=79  Identities=27%  Similarity=0.594  Sum_probs=72.1

Q ss_pred             CCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceec
Q psy327           37 GDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPR  116 (168)
Q Consensus        37 ~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~  116 (168)
                      +|++||++||.++++++|..|+++|.+                   +.|.++++.||+  +||+|..|+++|.+..|++.
T Consensus         1 gg~~yC~~cy~~~~~~~C~~C~~~I~~-------------------~~v~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~   59 (80)
T 2cuq_A            1 GSSGSSGPCYENKFAPRCARCSKTLTQ-------------------GGVTYRDQPWHR--ECLVCTGCQTPLAGQQFTSR   59 (80)
T ss_dssp             CCCCSCCCCCCCCSSCCCTTTCCCCCS-------------------CCEESSSSEECT--TTCBCSSSCCBCTTCCEEEC
T ss_pred             CCcEEcHHHHccccCCcCCCCCCEecC-------------------cEEEECCchhhh--hhCCcccCCCcCCCCeeEeE
Confidence            589999999999999999999999974                   258999999999  99999999999998899999


Q ss_pred             CCeeeecccccCCCCCCCCCC
Q psy327          117 AGVIFCSIACSKGEPPTPSDS  137 (168)
Q Consensus       117 dg~~~C~~~C~~~~~~~~~~~  137 (168)
                      |+++||.. |+.+++++.|++
T Consensus        60 ~~~~yC~~-cy~~~f~~~c~s   79 (80)
T 2cuq_A           60 DEDPYCVA-CFGELFASGPSS   79 (80)
T ss_dssp             SSSEEEHH-HHHHHTTCSTTC
T ss_pred             CCEEECHH-HHHHHcCCCCCC
Confidence            99999996 899998888764

>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.75  E-value=2.1e-19  Score=119.03  Aligned_cols=79  Identities=23%  Similarity=0.557  Sum_probs=71.6

Q ss_pred             CCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceec
Q psy327           37 GDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPR  116 (168)
Q Consensus        37 ~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~  116 (168)
                      +|++||++||.++++++|..|+++|.+                   +.|.++++.||+  +||+|..|+++|.+..|+..
T Consensus         1 gg~~yC~~~y~~~~~~~C~~C~~~I~~-------------------~~v~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~   59 (80)
T 1x3h_A            1 GSSGSSGKDFLAMFSPKCGGCNRPVLE-------------------NYLSAMDTVWHP--ECFVCGDCFTSFSTGSFFEL   59 (80)
T ss_dssp             CCCCCCCCCCCCCCSCBCTTTCCBCCS-------------------SCEEETTEEECT--TTCBCSSSCCBSCSSCCEES
T ss_pred             CCCccchhHHhhhcCCccccCCCeecc-------------------eeEEECCCeEec--CcCChhhCCCCCCCCcEEeE
Confidence            578999999999999999999999974                   258999999999  99999999999988889999


Q ss_pred             CCeeeecccccCCCCCCCCCC
Q psy327          117 AGVIFCSIACSKGEPPTPSDS  137 (168)
Q Consensus       117 dg~~~C~~~C~~~~~~~~~~~  137 (168)
                      |+++||.. |+.+++++.|.+
T Consensus        60 ~~~~yC~~-~y~~~f~~~C~~   79 (80)
T 1x3h_A           60 DGRPFCEL-HYHHRRGSGPSS   79 (80)
T ss_dssp             SSCEECHH-HHHHHHSSSCCC
T ss_pred             CCEEECHH-HHHHHcCCCCCC
Confidence            99999996 888888888764

>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=99.74  E-value=3.6e-19  Score=127.21  Aligned_cols=91  Identities=14%  Similarity=0.266  Sum_probs=76.7

Q ss_pred             ccCCCCCCCCCCccccccccccC--CCceEEECCeeccccchHhhhcc--ccccCcccccccCCccccCCcccccCCCCC
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLV--DLIYFYRGDKLYCGRHHAETLKP--RCSACDEVRVQVGGHRTRDLNINYFSSLPA   82 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~--~~~~~~~~g~~yC~~cy~~~~~~--~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~   82 (168)
                      +.|+++.||++||+|..|+++|.  +..|+.+||++||+.||.++|++  +|..|+++|.+.                  
T Consensus        21 ~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~------------------   82 (122)
T 1m3v_A           21 LYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG------------------   82 (122)
T ss_dssp             EEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE------------------
T ss_pred             EEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCch------------------
Confidence            56899999999999999999997  36799999999999999999999  999999999842                  


Q ss_pred             CceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCC
Q psy327           83 GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPP  132 (168)
Q Consensus        83 ~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~  132 (168)
                       .|.+.|+               ..|.|+.|++.|++|||.. ++.+...
T Consensus        83 -~~~~~g~---------------~~l~g~~f~~~~~~~yC~~-~~~~~~~  115 (122)
T 1m3v_A           83 -DVMVVGE---------------PTLMGGEFGDEDERLITRL-ENTQFDA  115 (122)
T ss_dssp             -ESSSSSS---------------SSCCSCTTCCTTCCCCEEC-TTTTTTC
T ss_pred             -heEEcCC---------------cCCCCCccEecCCEeEccC-cchhchh
Confidence             2334432               2578999999999999996 7766644

>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.73  E-value=9.2e-19  Score=116.27  Aligned_cols=78  Identities=19%  Similarity=0.376  Sum_probs=69.7

Q ss_pred             CCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceec
Q psy327           37 GDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPR  116 (168)
Q Consensus        37 ~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~  116 (168)
                      ||++||++||. ++.++|..|+++|.+                   ++|.++++.||+  +||+|..|+++|.+..|+..
T Consensus         2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~-------------------~~~~a~~~~~H~--~CF~C~~C~~~L~~~~f~~~   59 (81)
T 2dlo_A            2 SSGSSGEGCYV-ATLEKCATCSQPILD-------------------RILRAMGKAYHP--GCFTCVVCHRGLDGIPFTVD   59 (81)
T ss_dssp             CCCCCCCCCCC-SSCCBCTTTCCBCCS-------------------CCEEETTEEECT--TTCBCSSSCCBCTTSCEECC
T ss_pred             cCCEECHHHhh-cCCCccccCCCeecc-------------------eeEEECCccccH--HhcCcccCCCccCCCeeEEC
Confidence            68999999999 789999999999973                   258999999999  99999999999998888876


Q ss_pred             -CCeeeecccccCCCCCCCCCC
Q psy327          117 -AGVIFCSIACSKGEPPTPSDS  137 (168)
Q Consensus       117 -dg~~~C~~~C~~~~~~~~~~~  137 (168)
                       ||++||.. |+.+++++.|.+
T Consensus        60 ~~g~~yC~~-cy~~~f~~~C~~   80 (81)
T 2dlo_A           60 ATSQIHCIE-DFHRKFASGPSS   80 (81)
T ss_dssp             TTCCCEEHH-HHHHHTTSSSCC
T ss_pred             CCCEEECHH-HHHHHhcCcCCC
Confidence             79999996 898888888764

>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=1.1e-18  Score=114.74  Aligned_cols=76  Identities=26%  Similarity=0.639  Sum_probs=65.8

Q ss_pred             CCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceec
Q psy327           37 GDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPR  116 (168)
Q Consensus        37 ~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~  116 (168)
                      ++++||++||.++++++|.+|+++|.+.+..              ++.|.++++.||+  +||+|..|+++|.+..|+..
T Consensus         1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~--------------~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~f~~~   64 (77)
T 2egq_A            1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKG--------------SSVVAYEGQSWHD--YCFHCKKCSVNLANKRFVFH   64 (77)
T ss_dssp             CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSC--------------CCEEEETTEEEET--TTCBCSSSCCBCTTSCCCEE
T ss_pred             CCCeEchhHhchhhCccCcccCCcccCCCCC--------------ceeEEECcceeCc--ccCEehhcCCCCCCCccEeE
Confidence            4789999999999999999999999852101              1269999999999  99999999999998899999


Q ss_pred             CCeeeecccccCC
Q psy327          117 AGVIFCSIACSKG  129 (168)
Q Consensus       117 dg~~~C~~~C~~~  129 (168)
                      +|++||.. |+.+
T Consensus        65 ~~~~yC~~-cy~~   76 (77)
T 2egq_A           65 QEQVYCPD-CAKK   76 (77)
T ss_dssp             TTEECCHH-HHHH
T ss_pred             CCEEEChH-Hhcc
Confidence            99999996 7743

>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.72  E-value=1.6e-18  Score=115.29  Aligned_cols=80  Identities=21%  Similarity=0.578  Sum_probs=70.7

Q ss_pred             CCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceec
Q psy327           37 GDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPR  116 (168)
Q Consensus        37 ~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~  116 (168)
                      ++.+||++||.++++++|..|+++|.+.  .               .+|.++++.||+  +||+|..|+++|.+..|+..
T Consensus         1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~--~---------------~~~~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~   61 (82)
T 1x63_A            1 GSSGSSGKCTTREDSPKCKGCFKAIVAG--D---------------QNVEYKGTVWHK--DCFTCSNCKQVIGTGSFFPK   61 (82)
T ss_dssp             CCSCCCCCCCSCCCSCBCSSSCCBCCSS--S---------------CEEECSSCEEET--TTCCCSSSCCCCTTSCEEEE
T ss_pred             CCCcCchhHHccccCCcCccCCcccccC--c---------------eEEEECcccccc--ccCchhhCCCccCCCccEee
Confidence            4789999999999999999999999742  1               258999999999  99999999999988899999


Q ss_pred             CCeeeecccccCCCCCCCCC
Q psy327          117 AGVIFCSIACSKGEPPTPSD  136 (168)
Q Consensus       117 dg~~~C~~~C~~~~~~~~~~  136 (168)
                      ++++||.. |+.+++++.+.
T Consensus        62 ~~~~yC~~-cy~~~f~~~~~   80 (82)
T 1x63_A           62 GEDFYCVT-CHETKFASGPS   80 (82)
T ss_dssp             TTEEEEHH-HHHHHTSCCCS
T ss_pred             CCEEECHH-HHHHHhCCCCC
Confidence            99999996 88888877664

>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.71  E-value=1.7e-18  Score=114.91  Aligned_cols=78  Identities=19%  Similarity=0.490  Sum_probs=68.1

Q ss_pred             CCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCC-CCCce-
Q psy327           37 GDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLL-GRPFL-  114 (168)
Q Consensus        37 ~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~-~~~f~-  114 (168)
                      ++.+||++||.++|+++|..|+++|.+                   +.|.++++.||+  +||+|..|+++|. +..|+ 
T Consensus         1 g~~~yC~~~y~~~~~~~C~~C~~~I~~-------------------~~~~a~~~~~H~--~CF~C~~C~~~L~~g~~f~~   59 (81)
T 1x6a_A            1 GSSGSSGKDYWGKFGEFCHGCSLLMTG-------------------PFMVAGEFKYHP--ECFACMSCKVIIEDGDAYAL   59 (81)
T ss_dssp             CCCCCCCCCSSCCSSCBCTTTCCBCCS-------------------CCBCCTTCCBCT--TSCBCTTTCCBCCTTSCEEE
T ss_pred             CCCccchhHHhhhcCCcCccCCCCcCc-------------------eEEEECCceecc--ccCCccCCCCccCCCCcEEE
Confidence            468999999999999999999999983                   258899999999  9999999999994 67788 


Q ss_pred             ecCCeeeecccccCCCCCCCCC
Q psy327          115 PRAGVIFCSIACSKGEPPTPSD  136 (168)
Q Consensus       115 ~~dg~~~C~~~C~~~~~~~~~~  136 (168)
                      ..+++|||.. |+.+++++.+.
T Consensus        60 ~~~~~~~C~~-c~~~~~~~~~s   80 (81)
T 1x6a_A           60 VQHATLYCGK-CHNEVVSGPSS   80 (81)
T ss_dssp             CSSSCEEEHH-HHHHHHCTTSC
T ss_pred             eeCCEEECHH-HHHHHhcCCCC
Confidence            4899999996 88887776654

>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.65  E-value=2.9e-16  Score=102.97  Aligned_cols=73  Identities=33%  Similarity=0.723  Sum_probs=59.6

Q ss_pred             hhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccC
Q psy327           49 TLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSK  128 (168)
Q Consensus        49 ~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~  128 (168)
                      +|+++|..|+++|.+++.               ++.|.++++.||+  +||+|..|+++|.+..|++.||+|||.. ||.
T Consensus         3 ~~~~~C~~C~~~I~~~g~---------------~~~~~a~~~~wH~--~CF~C~~C~~~L~~~~f~~~~g~~yC~~-cy~   64 (76)
T 1x68_A            3 SGSSGCVACSKPISGLTG---------------AKFICFQDSQWHS--ECFNCGKCSVSLVGKGFLTQNKEIFCQK-CGS   64 (76)
T ss_dssp             TCCCCCTTTCCCCCTTTT---------------CCEEEETTEEEEG--GGCBCTTTCCBCSSSCEEEETTEEEETT-TTC
T ss_pred             ccCCCCccCCCcccCCCC---------------ceeEEECCcccCc--ccCChhhCCCcCCCCceEeECCEEECHH-Hhh
Confidence            455666666666653211               1469999999999  9999999999999999999999999995 999


Q ss_pred             CCCCCCCCCCC
Q psy327          129 GEPPTPSDSSG  139 (168)
Q Consensus       129 ~~~~~~~~~~~  139 (168)
                      +++.+.|..+.
T Consensus        65 ~~f~~~C~~~s   75 (76)
T 1x68_A           65 GMDTDISGPSS   75 (76)
T ss_dssp             CCCCCSSSSSC
T ss_pred             hhhCCcCCCCC
Confidence            99999998764

>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.65  E-value=1.9e-16  Score=105.00  Aligned_cols=75  Identities=23%  Similarity=0.429  Sum_probs=63.1

Q ss_pred             CeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCcee-c
Q psy327           38 DKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLP-R  116 (168)
Q Consensus        38 g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~-~  116 (168)
                      +.+||+.||.++|+++|..|+++|.+                   +.|.++++.||+  +||+|..|+++|....++. .
T Consensus         2 ~~~yC~~dy~~~~~~~C~~C~~~I~~-------------------~~v~a~~~~wH~--~CF~C~~C~~~L~~~~~~~~~   60 (81)
T 1v6g_A            2 SSGSSGLDYQRLYGTRCFSCDQFIEG-------------------EVVSALGKTYHP--DCFVCAVCRLPFPPGDRVTFN   60 (81)
T ss_dssp             CCCCCCSCGGGSCCCBCTTTCCBCCS-------------------CCEEETTEEECT--TTSSCSSSCCCCCSSSCEEEE
T ss_pred             CCCcchHHHHhHhCCcCccccCEecc-------------------ceEEECCceeCc--cCCccccCCCCCCCCCEEEeC
Confidence            56899999999999999999999973                   258999999999  9999999999996555555 4


Q ss_pred             CCeeeecccccCCCCCCC
Q psy327          117 AGVIFCSIACSKGEPPTP  134 (168)
Q Consensus       117 dg~~~C~~~C~~~~~~~~  134 (168)
                      ++.+||.. |+.+++++.
T Consensus        61 ~~~~~C~~-C~~~~~~~~   77 (81)
T 1v6g_A           61 GKECMCQK-CSLPVSVSG   77 (81)
T ss_dssp             TTEEEEHH-HHSCCSSCC
T ss_pred             CCCEEChh-hhcccCCCC
Confidence            55679996 998776654

>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=99.64  E-value=1.1e-16  Score=112.98  Aligned_cols=88  Identities=15%  Similarity=0.275  Sum_probs=71.4

Q ss_pred             ccCCCCCCCCCCccccccccccCC--CceEEECCeeccccchHhhhccccccCcccccccCCccccCCcccccCCCCCCc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVD--LIYFYRGDKLYCGRHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQ   84 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~--~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~   84 (168)
                      +.|+++.||++||+|+.|+++|..  ..|+.+||++||+.||.++|+++|..|...      .                +
T Consensus        19 ~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~~------~----------------~   76 (114)
T 1j2o_A           19 LKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSGG------D----------------V   76 (114)
T ss_dssp             EECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBSC------S----------------C
T ss_pred             EEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCCC------c----------------e
Confidence            678999999999999999999975  589999999999999999999999988621      1                1


Q ss_pred             eeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCC
Q psy327           85 MSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPT  133 (168)
Q Consensus        85 v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~  133 (168)
                      |.              |.  ...|.|+.|++.|++|||.. ++.+..++
T Consensus        77 ~~--------------~~--~~~~~g~~f~~~~~~~~C~~-~~~~~~~~  108 (114)
T 1j2o_A           77 MV--------------VG--EPTLMGGEFGDEDERLITRL-ENTQFDAA  108 (114)
T ss_dssp             CC--------------SS--CSSTTSSBCCCSSSCCCEEE-ECTTCCCT
T ss_pred             eE--------------cC--CccCCCCeeEEcCCEeecch-hhhccccc
Confidence            21              11  23468889999999999996 77665443

>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3

Probab=99.60  E-value=8.5e-16  Score=100.63  Aligned_cols=70  Identities=17%  Similarity=0.336  Sum_probs=60.6

Q ss_pred             CCcccccCCCC-CCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeec-ccccCCCCCCCCCCCCCCCC
Q psy327           71 DLNINYFSSLP-AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCS-IACSKGEPPTPSDSSGPGLR  143 (168)
Q Consensus        71 ~~C~~C~~~i~-~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~-~~C~~~~~~~~~~~~~~~~~  143 (168)
                      |.|..|+++|. ++.|.++|+.||+  +||+|..|+++|.+..|+..||++||. . |+.+++++.|.+|+.++.
T Consensus         1 p~C~~C~~~I~~~~~v~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~g~~yC~~~-cy~~~f~~~C~~C~~~~~   72 (76)
T 1iml_A            1 PKCPKCDKEVYFAERVTSLGKDWHR--PCLKCEKCGKTLTSGGHAEHEGKPYCNHP-CYSAMFGPKGFGRGGAES   72 (76)
T ss_dssp             CBCTTTSSBCCGGGEEEETTEEEET--TTCBCTTTCCBCCTTTEEEETTEEEETTT-HHHHHSSCCCSSCCCSSS
T ss_pred             CcCCCCCCEEECceEEEECCccccC--CCCCccccCccCCCCceECcCCeEeeCHH-HHHHHhCccCCCcCCcee
Confidence            35666666665 5679999999999  999999999999888999999999998 5 899999999999997664

>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3

Probab=99.58  E-value=2.7e-15  Score=103.18  Aligned_cols=71  Identities=18%  Similarity=0.472  Sum_probs=61.3

Q ss_pred             CcccccCCCC--CCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCCCCCCCCCC
Q psy327           72 LNINYFSSLP--AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSGPGLRPQ  145 (168)
Q Consensus        72 ~C~~C~~~i~--~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~~~~~~~~~  145 (168)
                      .|..|+++|.  +.+|.++|+.||+  +||+|..|+++|.+..|+..||++||.. ||.+++++.|..|+.+|.+.
T Consensus         7 ~C~~C~~~I~~~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~g~~yC~~-cy~~~~~~~C~~C~~~I~~~   79 (101)
T 2cup_A            7 GCVECRKPIGADSKEVHYKNRFWHD--TCFRCAKCLHPLANETFVAKDNKILCNK-CTTREDSPKCKGCFKAIVAG   79 (101)
T ss_dssp             BCSSSCCBCCSSSCEEEETTEEEET--TTCCCSSSCCCTTSSCCEEETTEEECHH-HHTTCCCCBCSSSCCBCCSS
T ss_pred             cCcccCCcccCCceEEEECccChhh--cCCcccccCCCCCcCeeECcCCEEEChh-HhhhhcCCccccCCCccccC
Confidence            3444444443  3469999999999  9999999999999889999999999996 99999999999999999875

>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.58  E-value=1.1e-15  Score=98.42  Aligned_cols=64  Identities=23%  Similarity=0.525  Sum_probs=54.4

Q ss_pred             CCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCC
Q psy327           71 DLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDS  137 (168)
Q Consensus        71 ~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~  137 (168)
                      +.|..|.++|.++.|.++++.||+  +||+|..|+++|.+..|++.|+++||.. ||.+++++.|.+
T Consensus         6 ~~C~~C~~~I~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~~~~yC~~-cy~~~f~~~c~~   69 (70)
T 2d8z_A            6 SGCVQCKKPITTGGVTYREQPWHK--ECFVCTACRKQLSGQRFTARDDFAYCLN-CFCDLYASGPSS   69 (70)
T ss_dssp             CBCSSSCCBCCSSEEESSSSEEET--TTSBCSSSCCBCTTSCCEESSSSEECHH-HHHHHTCCCCTT
T ss_pred             CCCcccCCeeccceEEECccccCC--CCCccCCCCCcCCcCceEeeCCeEECHH-HHHHHhccccCC
Confidence            445555555555679999999999  9999999999999889999999999996 898888888763

>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.57  E-value=1.2e-15  Score=98.02  Aligned_cols=64  Identities=30%  Similarity=0.621  Sum_probs=54.4

Q ss_pred             CCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCC
Q psy327           71 DLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDS  137 (168)
Q Consensus        71 ~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~  137 (168)
                      +.|..|+++|.++.|.++++.||+  +||+|..|+++|.+..|++.|+++||.. ||.+++++.|.+
T Consensus         6 ~~C~~C~~~I~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~~~~yC~~-cy~~~f~~~C~g   69 (69)
T 2cur_A            6 SGCVKCNKAITSGGITYQDQPWHA--DCFVCVTCSKKLAGQRFTAVEDQYYCVD-CYKNFVSGPSSG   69 (69)
T ss_dssp             CCCSSSCCCCCTTCEEETTEEECT--TTTBCTTTCCBCTTSCEEECSSCEEEHH-HHHHHHTCSCCC
T ss_pred             CCCcccCCEeCcceEEECcccccc--CcCEECCCCCCCCCCccEeECCEEECHH-HhHHHhcCCCCC
Confidence            445555555555679999999999  9999999999999889999999999995 999888888764

>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}

Probab=99.56  E-value=1.8e-15  Score=96.32  Aligned_cols=46  Identities=37%  Similarity=1.001  Sum_probs=42.0

Q ss_pred             CceeeCCceee--CCCCceecCCCCccCCCCCceecCCeeeecccccCCC
Q psy327           83 GQMSHEGQHWH--ATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGE  130 (168)
Q Consensus        83 ~~v~~~~~~~H--~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~  130 (168)
                      +.|.++|+.||  +  +||+|..|+++|.+..|++.||+|||+.+|+.++
T Consensus        17 ~~v~a~~~~wH~~~--~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~   64 (65)
T 2iyb_E           17 QRVTYNNFSWHAST--ECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM   64 (65)
T ss_dssp             CEEEETTEEEETTT--TTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred             eEEEECCCccCCCC--CCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence            46999999999  9  9999999999999999999999999955799765

>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.55  E-value=2.4e-15  Score=97.22  Aligned_cols=63  Identities=22%  Similarity=0.567  Sum_probs=51.8

Q ss_pred             CcccccCCCC--CCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCC
Q psy327           72 LNINYFSSLP--AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDS  137 (168)
Q Consensus        72 ~C~~C~~~i~--~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~  137 (168)
                      .|..|+++|.  +.+|.++|+.||+  +||+|..|+++|.+..|+..||++||.. ||.+++++.|.+
T Consensus         7 ~C~~C~~~I~~~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~~~~yC~~-cy~~~f~~~C~~   71 (72)
T 1x4k_A            7 GCQECKKTIMPGTRKMEYKGSSWHE--TCFICHRCQQPIGTKSFIPKDNQNFCVP-CYEKQHASGPSS   71 (72)
T ss_dssp             CBSSSCCCCCSSSCEEEETTEEEET--TTTCCSSSCCCCCSSSEEEETTEEEEHH-HHHHHTSSCCCC
T ss_pred             CCccCCCcccCCceEEEECcCeecc--cCCcccccCCccCCCccCccCCeEECHH-HHhHHhCCCCCC
Confidence            3444444443  2369999999999  9999999999998889999999999996 999998888864

>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.55  E-value=2.5e-15  Score=97.21  Aligned_cols=63  Identities=25%  Similarity=0.566  Sum_probs=51.8

Q ss_pred             CcccccCCCC--CCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCC
Q psy327           72 LNINYFSSLP--AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDS  137 (168)
Q Consensus        72 ~C~~C~~~i~--~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~  137 (168)
                      .|..|+++|.  +.+|.++++.||+  +||+|..|+++|.+..|+..+|++||.. ||.+++++.|++
T Consensus         7 ~C~~C~~~I~~~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~~~~yC~~-cy~~~f~~~C~~   71 (72)
T 1wyh_A            7 GCSACGETVMPGSRKLEYGGQTWHE--HCFLCSGCEQPLGSRSFVPDKGAHYCVP-CYENKFASGPSS   71 (72)
T ss_dssp             BCSSSCCBCCSSSCEECSTTCCEET--TTCBCTTTCCBTTTSCEEEETTEEEEHH-HHHHHTSCCCCC
T ss_pred             CCccCCCccccCccEEEECccccCc--ccCeECCCCCcCCCCccCCcCCeEECHH-HHHHHccCcCCC
Confidence            3444444443  3468999999999  9999999999998888999999999996 899998888764

>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.55  E-value=4.4e-15  Score=96.73  Aligned_cols=61  Identities=15%  Similarity=0.331  Sum_probs=50.0

Q ss_pred             CCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCC-CCCceecCCeeeecccccCCCCCCC
Q psy327           71 DLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLL-GRPFLPRAGVIFCSIACSKGEPPTP  134 (168)
Q Consensus        71 ~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~-~~~f~~~dg~~~C~~~C~~~~~~~~  134 (168)
                      +.|..|+++|.++.|.++|+.||+  +||+|..|+++|. +..|+..++++||.. |+.++++..
T Consensus         6 ~~C~~C~~~I~~~~v~a~~~~wH~--~CF~C~~C~~~L~~~~~f~~~~~~~yC~~-C~~~~~~~~   67 (73)
T 1wig_A            6 SGCDSCEKYITGRVLEAGEKHYHP--SCALCVRCGQMFAEGEEMYLQGSSIWHPA-CRQAARTED   67 (73)
T ss_dssp             CSCSSSCCCCSSCCBCCSSCCBCT--TTSCCSSSCCCCCSSCCCEEETTEEECTT-HHHHTSSSS
T ss_pred             CCcccCCCEecCeeEEeCCCCCCC--CcCEeCCCCCCCCCCCeeEeeCCEEEChH-HChHhhccc
Confidence            344455555555579999999999  9999999999997 889999999999995 998776643

>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B

Probab=99.54  E-value=1.9e-15  Score=96.30  Aligned_cols=60  Identities=20%  Similarity=0.444  Sum_probs=49.1

Q ss_pred             CCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCC
Q psy327           71 DLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPT  133 (168)
Q Consensus        71 ~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~  133 (168)
                      +.|..|+++|.++.|.++|+.||+  +||+|..|+++|.+..|++.||++||.. ||.+++++
T Consensus         6 ~~C~~C~~~I~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~g~~yC~~-~y~~~f~~   65 (66)
T 1nyp_A            6 PICGACRRPIEGRVVNAMGKQWHV--EHFVCAKCEKPFLGHRHYERKGLAYCET-HYNQLFGD   65 (66)
T ss_dssp             CEETTTTEECCSCEECCTTSBEET--TTCBCTTTCCBCSSSCCEEETTEEECHH-HHHHHCSC
T ss_pred             CCCcccCCEecceEEEECcccccc--CcCEECCCCCCCCCCceEeECCcEECHH-HHHHHhCC
Confidence            344455555555579999999999  9999999999999889999999999996 78766654

>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.53  E-value=3.9e-15  Score=100.62  Aligned_cols=70  Identities=24%  Similarity=0.553  Sum_probs=58.5

Q ss_pred             hHhhhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeeccc
Q psy327           46 HAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIA  125 (168)
Q Consensus        46 y~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~  125 (168)
                      +...+.++|..|+++|.                   ++.|.++++.||+  +||+|..|+++|.+..|++.+|++||.. 
T Consensus        20 ~~~~~~~~C~~C~~~I~-------------------~~~v~a~~~~~H~--~CF~C~~C~~~L~~~~f~~~~g~~yC~~-   77 (90)
T 2dar_A           20 PAGKRTPMCAHCNQVIR-------------------GPFLVALGKSWHP--EEFNCAHCKNTMAYIGFVEEKGALYCEL-   77 (90)
T ss_dssp             CTTTCCCBBSSSCCBCC-------------------SCEEEETTEEECT--TTCBCSSSCCBCSSSCBEESSSCEECHH-
T ss_pred             CCCCCCCCCccCCCEec-------------------ceEEEECCccccc--cCCccCCCCCCCCCCEeEeECCEEECHH-
Confidence            44455666666666664                   3468999999999  9999999999999889999999999996 


Q ss_pred             ccCCCCCCCCCC
Q psy327          126 CSKGEPPTPSDS  137 (168)
Q Consensus       126 C~~~~~~~~~~~  137 (168)
                      ||.++++++|.+
T Consensus        78 cy~~~f~~~c~s   89 (90)
T 2dar_A           78 CYEKFFASGPSS   89 (90)
T ss_dssp             HHHHHTSCCCCC
T ss_pred             HHHHHcCCCCCC
Confidence            999999988864

>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.53  E-value=7.5e-15  Score=95.03  Aligned_cols=50  Identities=42%  Similarity=0.848  Sum_probs=45.4

Q ss_pred             CceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCC
Q psy327           83 GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPS  135 (168)
Q Consensus        83 ~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~  135 (168)
                      .+|.++++.||+  +||+|..|+++|.+..|+..||++||.. |+.+++.+.+
T Consensus        22 ~~~~a~~~~wH~--~CF~C~~C~~~L~~~~f~~~~g~~yC~~-c~~~~~~p~~   71 (72)
T 1x4l_A           22 KYISFEERQWHN--DCFNCKKCSLSLVGRGFLTERDDILCPD-CGKDISGPSS   71 (72)
T ss_dssp             SCEECSSCEECT--TTCBCSSSCCBCTTSCCEECSSSEECHH-HHHTCCCSSC
T ss_pred             ceEEECCcccCc--ccCEeccCCCcCCCCccEeECCEEEChh-HcCcccCCCC
Confidence            468999999999  9999999999999999999999999995 9988887654

>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}

Probab=99.53  E-value=3.2e-15  Score=106.74  Aligned_cols=71  Identities=18%  Similarity=0.359  Sum_probs=61.2

Q ss_pred             CcccccCCCC-CCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCCCCCCCCCC
Q psy327           72 LNINYFSSLP-AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSGPGLRPQ  145 (168)
Q Consensus        72 ~C~~C~~~i~-~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~~~~~~~~~  145 (168)
                      .|..|+++|. +++|.++|+.||+  +||+|..|+++|.+..|+..||++||.. ||.+++++.|..|+.+|.+.
T Consensus         5 ~C~~C~~~I~~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~f~~~~g~~yC~~-cy~~~~~~~C~~C~~~I~~~   76 (126)
T 2xqn_T            5 RCAGCDELIFSNEYTQAENQNWHL--KHFCCFDCDSILAGEIYVMVNDKPVCKP-CYVKNHAVVCQGCHNAIDPE   76 (126)
T ss_dssp             BBTTTSSBCCSSCEEEETTEEECG--GGSBCTTTCCBCTTSEEEEETTEEEEHH-HHHHHSCCBCTTTCSBCCTT
T ss_pred             CCccCCCEeCCceEEeeCCCCccC--CCCCcCCCCCCCCcCEEEeECCEEechH-HhCcCcCccCcccCCcCCcC
Confidence            3444444444 2468999999999  9999999999999889999999999996 99999999999999999974

>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A

Probab=99.52  E-value=4.5e-15  Score=98.30  Aligned_cols=68  Identities=18%  Similarity=0.353  Sum_probs=49.1

Q ss_pred             CcccccCCCC-CCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCCCCCCC
Q psy327           72 LNINYFSSLP-AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSGPGL  142 (168)
Q Consensus        72 ~C~~C~~~i~-~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~~~~~~  142 (168)
                      .|..|.++|. ++.|.++++.||+  +||+|..|+++|.+..|+..|+++||.. |+.+++++.|.+|+.+.
T Consensus         9 ~C~~C~~~I~~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~~~~yC~~-cy~~~f~~~c~gcg~g~   77 (81)
T 1a7i_A            9 KCGACGRTVYHAEEVQCDGRSFHR--CCFLCMVCRKNLDSTTVAIHDAEVYCKS-CYGKKYGPKGYGYGQGA   77 (81)
T ss_dssp             BCSSSCCBCSSTTEEEETTEEEES--SSEECSSSCCEECSSCCEEETTEEECSH-HHHHHCC----------
T ss_pred             cCcCcCccccCceeEEeCCccccc--ccCccCCCCCCCCCCCeEeeCCEEECHH-HHHHHhCCcccccCCcc
Confidence            3444444442 4468999999999  9999999999998888999999999996 99999999999998653

>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.51  E-value=6.6e-15  Score=94.80  Aligned_cols=63  Identities=21%  Similarity=0.405  Sum_probs=52.7

Q ss_pred             CCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCC
Q psy327           71 DLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSD  136 (168)
Q Consensus        71 ~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~  136 (168)
                      +.|..|++.|.++.|.++++.||+  +||+|..|+++|.+..|+..||++||.. ||.+++.+...
T Consensus         6 ~~C~~C~~~I~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~f~~~~g~~yC~~-c~~~~~~~~~~   68 (70)
T 2d8x_A            6 SGCHQCGEFIIGRVIKAMNNSWHP--ECFRCDLCQEVLADIGFVKNAGRHLCRP-CHNREKASGPS   68 (70)
T ss_dssp             SBCSSSCCBCCSCCEEETTEEECT--TTSBCSSSCCBCSSSCCEEETTEEECHH-HHHHHHCCCSC
T ss_pred             CcCccCCCEecceEEEECcccccc--cCCEeCCCCCcCCCCccEeECCeEECHH-HhhhhcCCCCC
Confidence            456666666666679999999999  9999999999998888999999999996 88877766543

>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.51  E-value=1.1e-14  Score=96.55  Aligned_cols=64  Identities=23%  Similarity=0.505  Sum_probs=54.8

Q ss_pred             cCCcccccCCCC-CCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCC
Q psy327           70 RDLNINYFSSLP-AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDS  137 (168)
Q Consensus        70 ~~~C~~C~~~i~-~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~  137 (168)
                      .+.|..|.++|. ++.|.++++.||+  +||+|..|+++|.+ .|++.||+|||.. ||.+++.+.|.+
T Consensus        15 ~~~C~~C~~~I~~~~~v~a~~~~wH~--~CF~C~~C~~~L~~-~~~~~~g~~yC~~-~y~~~fg~~C~~   79 (80)
T 2dj7_A           15 PSHCAGCKEEIKHGQSLLALDKQWHV--SCFKCQTCSVILTG-EYISKDGVPYCES-DYHAQFGSGPSS   79 (80)
T ss_dssp             CSCCTTTCCCCSSSCCEEETTEEECT--TTCBCSSSCCBCSS-CCEEETTEEECTT-HHHHHTTCCSTT
T ss_pred             CCCCcCcCCeeCCCeEEEECCccccc--ccCCcCcCCCCcCC-CeEEECCEEECHH-HHHHHcCCCCCC
Confidence            346777777775 5679999999999  99999999999986 5999999999996 898999988864

>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.50  E-value=1.2e-14  Score=95.15  Aligned_cols=64  Identities=23%  Similarity=0.379  Sum_probs=52.6

Q ss_pred             CCcccccCCCC-CCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeec-ccccCCCCCCCCCC
Q psy327           71 DLNINYFSSLP-AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCS-IACSKGEPPTPSDS  137 (168)
Q Consensus        71 ~~C~~C~~~i~-~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~-~~C~~~~~~~~~~~  137 (168)
                      +.|..|.++|. ++.|.++++.||+  +||+|..|+++|.+..|+..|+++||. . ||.+++++.|.+
T Consensus        10 ~~C~~C~~~I~~~~~v~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~g~~yC~~~-cy~~~f~~kc~g   75 (76)
T 2cu8_A           10 SKCPKCDKTVYFAEKVSSLGKDWHK--FCLKCERCSKTLTPGGHAEHDGKPFCHKP-CYATLFGSGPSS   75 (76)
T ss_dssp             CBCTTTCCBCCTTTEEEETTEEEET--TTCBCSSSCCBCCTTSCEEETTEEECTTT-HHHHHSCSSCSC
T ss_pred             CCCcCCCCEeECCeEEEECCeEeeC--CCCCCCCCCCccCCCceEeECCEEecchH-HHHHhcccccCC
Confidence            34444444444 4568999999999  999999999999988999999999999 6 888888887753

>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=99.49  E-value=4.4e-15  Score=105.83  Aligned_cols=72  Identities=17%  Similarity=0.263  Sum_probs=60.4

Q ss_pred             CCcccccCCCCCC-ceeeCCceeeCCCCceecCCCCccCC--CCCceecCCeeeecccccCCCCCC--CCCCCCCCCCCC
Q psy327           71 DLNINYFSSLPAG-QMSHEGQHWHATDSCFCCATCSLSLL--GRPFLPRAGVIFCSIACSKGEPPT--PSDSSGPGLRPQ  145 (168)
Q Consensus        71 ~~C~~C~~~i~~~-~v~~~~~~~H~~~~CF~C~~C~~~l~--~~~f~~~dg~~~C~~~C~~~~~~~--~~~~~~~~~~~~  145 (168)
                      +.|..|+++|.+. +|.++++.||+  +||+|..|+.+|.  +..|+..||++||.. ||.+++++  .|.+|+.+|.+.
T Consensus         6 ~~C~~C~~~I~~~~~~~a~~~~wH~--~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~-cy~~~f~~~~~C~~C~~~I~~~   82 (122)
T 1m3v_A            6 KRCAGCGGKIADRFLLYAMDSYWHS--RCLKCSSCQAQLGDIGTSSYTKSGMILCRN-DYIRLFGNSGAGGSGGHMGSGG   82 (122)
T ss_dssp             CCBSSSSSCCCSSCCEEETTEEECH--HHHCCSSSCCCTTTSEECCEEETTEEECHH-HHHHHHCCCCSSSCSSCCSCCE
T ss_pred             CCCcccCCEeCCcEEEEECCceeHh--hCCCcCCCCCcccccCCeEEEECCeeecHH-HHHHHcCCCCccccCCCCcCch
Confidence            4455555555444 58999999999  9999999999996  578999999999996 89888888  999999999863

>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}

Probab=99.48  E-value=1.1e-14  Score=110.40  Aligned_cols=87  Identities=24%  Similarity=0.507  Sum_probs=68.6

Q ss_pred             CCeeccccchH---hhhccccccCcccccccCCccccCCcccccCCCCCC-ceeeCCceeeCCCCceecCCCCccCCCCC
Q psy327           37 GDKLYCGRHHA---ETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAG-QMSHEGQHWHATDSCFCCATCSLSLLGRP  112 (168)
Q Consensus        37 ~g~~yC~~cy~---~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~-~v~~~~~~~H~~~~CF~C~~C~~~l~~~~  112 (168)
                      ++..||..++.   ....++|..|+++|.                   +. +|.++|+.||+  +||+|..|+++|.+..
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~C~~C~~~I~-------------------~~~~~~a~~~~wH~--~CF~C~~C~~~L~~~~  101 (182)
T 2jtn_A           43 DDEGGSGGHMGSGGTPEIPMCAGCDQHIL-------------------DRFILKALDRHWHS--KCLKCSDCHVPLAERC  101 (182)
T ss_dssp             SSSCSSSSSCCCCCCCSCCBCBTSSSBCC-------------------CSEEEEETTEEECS--STTSCTTTCCCCSSCC
T ss_pred             ccccccccccccCCCCCCCcCccCCCCcc-------------------CceeEEecCCeEcc--ccCccCCCCCccCCCc
Confidence            45567776654   222355666666554                   33 57899999999  9999999999998776


Q ss_pred             ceecCCeeeecccccCCCCCCCCCCCCCCCCCCC
Q psy327          113 FLPRAGVIFCSIACSKGEPPTPSDSSGPGLRPQR  146 (168)
Q Consensus       113 f~~~dg~~~C~~~C~~~~~~~~~~~~~~~~~~~~  146 (168)
                      | ..||++||.. ||.+++++.|..|+.+|.+..
T Consensus       102 f-~~~g~~yC~~-~y~~~f~~kC~~C~~~I~~~~  133 (182)
T 2jtn_A          102 F-SRGESVYCKD-DFFKRFGTKCAACQLGIPPTQ  133 (182)
T ss_dssp             E-EETTEEECHH-HHHHTTSCCCTTTCCCCCSSC
T ss_pred             e-eECCEeeecC-ccccccccccccCCCccCCCc
Confidence            5 7899999996 999999999999999998753

>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.48  E-value=2.3e-14  Score=94.70  Aligned_cols=63  Identities=14%  Similarity=0.336  Sum_probs=52.1

Q ss_pred             cCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCC
Q psy327           70 RDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSD  136 (168)
Q Consensus        70 ~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~  136 (168)
                      .+.|..|++.|.++.|.++|+.||+  +||+|..|+++|.+..| ..||++||.. ||.+++++.+.
T Consensus        15 ~~~C~~C~~~I~~~~v~a~~~~~H~--~CF~C~~C~~~L~~~~f-~~~g~~yC~~-cy~~~f~p~~s   77 (79)
T 2cor_A           15 KYICQKCHAIIDEQPLIFKNDPYHP--DHFNCANCGKELTADAR-ELKGELYCLP-CHDKMGVSGPS   77 (79)
T ss_dssp             CCBCTTTCCBCCSCCCCCSSSCCCT--TTSBCSSSCCBCCTTCE-EETTEEECHH-HHHTTSCCSSC
T ss_pred             CCCCccCCCEecceEEEECcceeCC--CCCEeCCCCCccCCCCE-eECCEEeCHH-HHHHhCCCCCC
Confidence            4556666666666679999999999  99999999999987754 8899999996 88888877654

>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3

Probab=99.48  E-value=1.1e-14  Score=95.33  Aligned_cols=56  Identities=18%  Similarity=0.332  Sum_probs=52.2

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccc-cchHhhhccccccCccccc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCG-RHHAETLKPRCSACDEVRV   62 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~-~cy~~~~~~~C~~C~~~I~   62 (168)
                      +.|+|+.||++||+|..|+++|.+..|+.+||++||. .||.++|+++|.+|++.+.
T Consensus        16 v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~   72 (76)
T 1iml_A           16 VTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES   72 (76)
T ss_dssp             EEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred             EEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence            5788999999999999999999988999999999999 6999999999999997664

>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A

Probab=99.45  E-value=2.7e-14  Score=102.52  Aligned_cols=73  Identities=18%  Similarity=0.233  Sum_probs=61.3

Q ss_pred             CCcccccCCCCCC-ceeeCCceeeCCCCceecCCCCccCC--CCCceecCCeeeecccccCCCCCC--CCCCCCCCCCCC
Q psy327           71 DLNINYFSSLPAG-QMSHEGQHWHATDSCFCCATCSLSLL--GRPFLPRAGVIFCSIACSKGEPPT--PSDSSGPGLRPQ  145 (168)
Q Consensus        71 ~~C~~C~~~i~~~-~v~~~~~~~H~~~~CF~C~~C~~~l~--~~~f~~~dg~~~C~~~C~~~~~~~--~~~~~~~~~~~~  145 (168)
                      +.|..|+++|.++ +|.++|+.||+  +||+|..|+.+|.  +..|+..||++||.. ||.+++++  .|..|+.+|.+.
T Consensus         3 ~~C~~C~~~I~~~~~~~a~~~~wH~--~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~-~y~~~~~~~~~C~~C~~~I~~~   79 (131)
T 2xjy_A            3 LTCGGCQQNIGDRYFLKAIDQYWHE--DCLSCDLCGCRLGEVGRRLYYKLGRKLCRR-DYLRLFGQDGLCASCDKRIRAY   79 (131)
T ss_dssp             CBBTTTCCBCCSSEEEEETTEEEET--TTCBCTTTCCBCSSTTCCEEEETTEEECHH-HHHHHHCCCEECTTTCCEECTT
T ss_pred             ccCcCCCCEeCCcEEEEECCCcccH--HHcccCcCCCccccCCCeEEEECCEEeecC-chhhhCCCccChhhcCCccCcc
Confidence            3455566665555 58999999999  9999999999995  578999999999996 88888888  899999999874


Q ss_pred             C
Q psy327          146 R  146 (168)
Q Consensus       146 ~  146 (168)
                      .
T Consensus        80 e   80 (131)
T 2xjy_A           80 E   80 (131)
T ss_dssp             S
T ss_pred             c
Confidence            3

>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.44  E-value=3.4e-14  Score=91.83  Aligned_cols=59  Identities=19%  Similarity=0.362  Sum_probs=47.4

Q ss_pred             CCcccccCCCCC--CceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCC
Q psy327           71 DLNINYFSSLPA--GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPP  132 (168)
Q Consensus        71 ~~C~~C~~~i~~--~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~  132 (168)
                      +.|..|.++|..  ..|.++++.||+  +||+|..|+++|.+..|+..|+++||.. ||.+++.
T Consensus         6 ~~C~~C~~~I~~~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~~~~yC~~-cy~~~~~   66 (72)
T 1x61_A            6 SGCGGCGEDVVGDGAGVVALDRVFHV--GCFVCSTCRAQLRGQHFYAVERRAYCEG-CYVATLE   66 (72)
T ss_dssp             CCCSSSCSCCCSSSCCEECSSSEECT--TTCBCSSSCCBCTTSCEEESSSCEEEHH-HHHHHHH
T ss_pred             CCCccCCCccCCCceEEEECCCeEcc--cCCcccccCCcCCcCcCEeeCCeEECHH-HHHHHHc
Confidence            344444444442  368999999999  9999999999999889999999999996 8876653

>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=99.44  E-value=4.5e-14  Score=95.15  Aligned_cols=63  Identities=22%  Similarity=0.472  Sum_probs=53.9

Q ss_pred             cCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCC
Q psy327           70 RDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPS  135 (168)
Q Consensus        70 ~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~  135 (168)
                      .+.|..|.+.|.++.|.++++.||+  +||+|..|++.|.+..|+..|+++||.. ||.+++.+++
T Consensus        25 ~~~C~~C~~~I~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~g~~yC~~-~y~~~f~p~~   87 (89)
T 1x64_A           25 MPLCDKCGSGIVGAVVKARDKYRHP--ECFVCADCNLNLKQKGYFFVEGELYCET-HARARTSGPS   87 (89)
T ss_dssp             CCBCTTTCCBCCSCCEESSSCEECT--TTCCCSSSCCCTTTSCCEEETTEEECHH-HHHHHSSSCC
T ss_pred             CCCcccCCCEecccEEEECCceECc--cCCEecCCCCCCCCCCeEeECCEEECHH-HHHHHhCCCC
Confidence            4567777777767789999999999  9999999999998888999999999996 8887777654

>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A

Probab=99.44  E-value=1.6e-14  Score=95.63  Aligned_cols=55  Identities=18%  Similarity=0.373  Sum_probs=43.1

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccccCcccc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVR   61 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I   61 (168)
                      +.++++.||++||+|..|+++|....|+.+|+++||+.||.++|+++|.+|++..
T Consensus        23 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~   77 (81)
T 1a7i_A           23 VQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA   77 (81)
T ss_dssp             EEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred             EEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcc
Confidence            5778999999999999999999888899999999999999999999999999765

>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.43  E-value=3.9e-14  Score=92.66  Aligned_cols=62  Identities=16%  Similarity=0.227  Sum_probs=49.3

Q ss_pred             CcccccCCCC--CCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCC
Q psy327           72 LNINYFSSLP--AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSD  136 (168)
Q Consensus        72 ~C~~C~~~i~--~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~  136 (168)
                      .|..|+++|.  +.+|.++|+.||+  +||+|..|+++|.+..|+..||++||.. ||.+++++.|.
T Consensus        13 ~C~~C~~~I~~~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~g~~yC~~-~y~~~f~~~C~   76 (77)
T 1g47_A           13 TCERCKGGFAPAEKIVNSNGELYHE--QCFVCAQCFQQFPEGLFYEFEGRKYCEH-DFQMLFAPCWI   76 (77)
T ss_dssp             BCSSSCCBCCSTTTCEEETTEEECT--TTCCCTTTCCCCGGGCSEEETTEEECHH-HHHHHCCCC--
T ss_pred             CchhcCCccCCCceEEEeCccEecc--ccCeECCCCCCCCCCCeEeECCeEeCHH-HHHHHhhcccC
Confidence            4444444443  2357899999999  9999999999998778999999999996 88888888764

>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.43  E-value=1.3e-14  Score=95.65  Aligned_cols=63  Identities=16%  Similarity=0.343  Sum_probs=53.1

Q ss_pred             cCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCC
Q psy327           70 RDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPS  135 (168)
Q Consensus        70 ~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~  135 (168)
                      .+.|..|.+.|.++.|.++++.||+  +||+|..|+++|.+..|+..|+++||.. ||.+++.++.
T Consensus        15 ~~~C~~C~~~I~~~~~~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~g~~yC~~-cy~~~~~p~g   77 (79)
T 1x62_A           15 LPMCDKCGTGIVGVFVKLRDRHRHP--ECYVCTDCGTNLKQKGHFFVEDQIYCEK-HARERVSGPS   77 (79)
T ss_dssp             CCCCSSSCCCCCSSCEECSSCEECT--TTTSCSSSCCCHHHHCCEESSSCEECHH-HHHHHHSSCC
T ss_pred             CCccccCCCCccCcEEEECcceeCc--CcCeeCCCCCCCCCCCeEeECCEEECHH-HHHHHhCCCC
Confidence            3466667766666789999999999  9999999999998888999999999996 8877766553

>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.42  E-value=1.3e-13  Score=93.25  Aligned_cols=68  Identities=18%  Similarity=0.320  Sum_probs=54.8

Q ss_pred             CcccccCCCCC-CceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCCCCCCCC
Q psy327           72 LNINYFSSLPA-GQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSGPGLR  143 (168)
Q Consensus        72 ~C~~C~~~i~~-~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~~~~~~~  143 (168)
                      .|..|++.|.+ +.|.++++.||+  +||+|..|+++|.+..|+..|+++||.. ||.+++.+.|. ...++.
T Consensus        17 ~C~~C~~~I~~~~~v~a~~~~~H~--~CF~C~~C~~~L~~~~~~~~~g~~yC~~-~y~~~f~~kc~-~~~g~g   85 (91)
T 2d8y_A           17 TCVECQKTVYPMERLLANQQVFHI--SCFRCSYCNNKLSLGTYASLHGRIYCKP-HFNQLFKSKGN-YDEGFG   85 (91)
T ss_dssp             BCTTTCCBCCTTSEEECSSSEEET--TTCBCTTTCCBCCTTTCCCSSSCCCCHH-HHHHHSCCCSC-CCSCCC
T ss_pred             cCccCCCccCCceeEEECCCEECC--CCCeeCCCCCCCCCCCcEeECCEEECHH-HHHHHhCCCcC-ccCCcC
Confidence            45555555542 468999999999  9999999999998888999999999996 89999999887 344443

>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.41  E-value=2.3e-13  Score=90.37  Aligned_cols=62  Identities=27%  Similarity=0.480  Sum_probs=50.6

Q ss_pred             CCcccccCCCC-CCceeeCCceeeCCCCceecCCCCccCCCCCce--ecCCeeeecccccCCCCCCCC
Q psy327           71 DLNINYFSSLP-AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFL--PRAGVIFCSIACSKGEPPTPS  135 (168)
Q Consensus        71 ~~C~~C~~~i~-~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~--~~dg~~~C~~~C~~~~~~~~~  135 (168)
                      +.|..|++.|. .+.|.++++.||+  +||+|..|+++|.+..|+  +.||++||+. ||.+++....
T Consensus        16 ~~C~~C~~~I~~~e~v~a~~~~wH~--~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~-~y~~~~~~~~   80 (82)
T 2co8_A           16 DLCALCGEHLYVLERLCVNGHFFHR--SCFRCHTCEATLWPGGYEQHPGDGHFYCLQ-HLPQTDSGPS   80 (82)
T ss_dssp             CBCSSSCCBCCTTTBCCBTTBCCBT--TTCBCSSSCCBCCTTSEECCTTTCCCEETT-TCCCCCCCCC
T ss_pred             CCCcccCCCcccceEEEECCCeeCC--CcCEEcCCCCCcCCCceeEeCcCCEEEChH-HHHhhhcCCC
Confidence            45666666664 4568899999999  999999999999888887  4799999996 7888776654

>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.41  E-value=1e-13  Score=89.52  Aligned_cols=50  Identities=22%  Similarity=0.398  Sum_probs=47.2

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccccc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA   56 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~   56 (168)
                      +.|+++.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|+.
T Consensus        22 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~   71 (72)
T 1wyh_A           22 LEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS   71 (72)
T ss_dssp             ECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred             EEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence            57899999999999999999999889999999999999999999999863

>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.40  E-value=6e-14  Score=90.18  Aligned_cols=50  Identities=24%  Similarity=0.489  Sum_probs=47.2

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccccc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA   56 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~   56 (168)
                      +.|+++.||++||+|..|+++|.+..|+.+|+++||..||.++|+++|..
T Consensus        20 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~   69 (70)
T 2d8z_A           20 VTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS   69 (70)
T ss_dssp             EESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred             EEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence            67899999999999999999999889999999999999999999999863

>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.40  E-value=3.3e-14  Score=93.05  Aligned_cols=53  Identities=19%  Similarity=0.451  Sum_probs=49.5

Q ss_pred             eccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccccCc
Q psy327            6 SRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACD   58 (168)
Q Consensus         6 ~~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~   58 (168)
                      .+.|+++.||++||+|..|+++|.+..|+.+|+++||..||.++|+++|..++
T Consensus        23 ~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s   75 (76)
T 1x68_A           23 FICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS   75 (76)
T ss_dssp             EEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred             eEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence            36789999999999999999999988999999999999999999999998875

>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.40  E-value=6.5e-14  Score=89.82  Aligned_cols=50  Identities=22%  Similarity=0.477  Sum_probs=47.0

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccccc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA   56 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~   56 (168)
                      +.++++.||++||+|..|+++|.+..|+..|+++||+.||.++|+++|.+
T Consensus        20 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g   69 (69)
T 2cur_A           20 ITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG   69 (69)
T ss_dssp             EEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred             EEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence            46889999999999999999999889999999999999999999999974

>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=99.39  E-value=8.4e-14  Score=98.02  Aligned_cols=66  Identities=17%  Similarity=0.245  Sum_probs=55.0

Q ss_pred             CCcccccCCCCCC-ceeeCCceeeCCCCceecCCCCccCC--CCCceecCCeeeecccccCCCCCCCCCCCC
Q psy327           71 DLNINYFSSLPAG-QMSHEGQHWHATDSCFCCATCSLSLL--GRPFLPRAGVIFCSIACSKGEPPTPSDSSG  139 (168)
Q Consensus        71 ~~C~~C~~~i~~~-~v~~~~~~~H~~~~CF~C~~C~~~l~--~~~f~~~dg~~~C~~~C~~~~~~~~~~~~~  139 (168)
                      +.|..|+++|.+. +|.++++.||+  +||+|+.|+++|.  |..|+..||+|||.. ||.+++++.|..|.
T Consensus         4 ~~C~~C~~~I~~~~~~~a~~~~wH~--~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~-~y~~~f~~~c~~c~   72 (114)
T 1j2o_A            4 LTCGGCQQNIGDRYFLKAIDQYWHE--DCLSCDLCGCRLGEVGRRLYYKLGRKLCRR-DYLRLGGSGGHMGS   72 (114)
T ss_dssp             BCBSSSCSCBCSSEEEECSSSEECT--TTCCCSSSCSCCCCSSSCCCCBTTBCCCHH-HHHHHHTSCCSSCB
T ss_pred             CCCcCCCCeeCCcEEEEECchhHHH--hcCcccccCCchhcCCCeeEEECCeeechH-HHHHHhCcccCcCC
Confidence            3466666666555 69999999999  9999999999996  468999999999996 89899999877654

>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.38  E-value=1.1e-13  Score=89.33  Aligned_cols=50  Identities=18%  Similarity=0.423  Sum_probs=47.0

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccccc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA   56 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~   56 (168)
                      +.|+++.||++||+|..|+++|.+..|+.+|+++||+.||.++|+++|..
T Consensus        22 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~   71 (72)
T 1x4k_A           22 MEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS   71 (72)
T ss_dssp             EEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred             EEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence            56799999999999999999999889999999999999999999999863

>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.38  E-value=1.3e-13  Score=91.23  Aligned_cols=49  Identities=22%  Similarity=0.548  Sum_probs=45.6

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccccc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA   56 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~   56 (168)
                      +.|+++.||++||+|..|+++|.+ .|+.+|+++||+.||.++|+++|..
T Consensus        31 v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~   79 (80)
T 2dj7_A           31 LLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS   79 (80)
T ss_dssp             EEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred             EEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence            578999999999999999999985 6999999999999999999999974

>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.37  E-value=1.1e-13  Score=93.35  Aligned_cols=50  Identities=20%  Similarity=0.452  Sum_probs=46.9

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccccc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA   56 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~   56 (168)
                      +.|+++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|..
T Consensus        40 v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s   89 (90)
T 2dar_A           40 LVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS   89 (90)
T ss_dssp             EEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred             EEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence            46899999999999999999999889999999999999999999999963

>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B

Probab=99.36  E-value=2.5e-13  Score=86.35  Aligned_cols=47  Identities=19%  Similarity=0.427  Sum_probs=44.3

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPR   53 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~   53 (168)
                      +.|+|+.||++||+|..|+++|.+..|+..||++||+.||.++|+++
T Consensus        20 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k   66 (66)
T 1nyp_A           20 VNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV   66 (66)
T ss_dssp             ECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred             EEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence            57899999999999999999999889999999999999999998864

>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=2.9e-13  Score=89.58  Aligned_cols=50  Identities=22%  Similarity=0.468  Sum_probs=47.0

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccccc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA   56 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~   56 (168)
                      +.|+++.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|.+
T Consensus        32 ~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~~   81 (82)
T 2ehe_A           32 LFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS   81 (82)
T ss_dssp             CCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSCC
T ss_pred             EEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCCC
Confidence            56789999999999999999999889999999999999999999999864

>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.36  E-value=1.7e-13  Score=89.58  Aligned_cols=50  Identities=20%  Similarity=0.306  Sum_probs=46.7

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccc-cchHhhhcccccc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCG-RHHAETLKPRCSA   56 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~-~cy~~~~~~~C~~   56 (168)
                      +.|+++.||++||+|..|+++|.+..|+.+|+++||+ +||.++|+++|.+
T Consensus        25 v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g   75 (76)
T 2cu8_A           25 VSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS   75 (76)
T ss_dssp             EEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred             EEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence            5688999999999999999999988899999999999 7999999999864

>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A

Probab=99.36  E-value=2.6e-13  Score=101.65  Aligned_cols=71  Identities=20%  Similarity=0.425  Sum_probs=58.8

Q ss_pred             CcccccCCCCCC-ceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCCCCCCCCCCC
Q psy327           72 LNINYFSSLPAG-QMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSGPGLRPQR  146 (168)
Q Consensus        72 ~C~~C~~~i~~~-~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~~~~~~~~~~  146 (168)
                      .|..|+++|.++ +|.++|+.||+  +||+|..|+++|.+..| ..||++||.. ||.+++++.|.+|+.+|.+..
T Consensus         8 ~C~~C~~~I~~~~~~~a~~~~wH~--~CF~C~~C~~~L~~~~f-~~~g~~yC~~-~y~~~f~~~C~~C~~~I~~~~   79 (169)
T 2rgt_A            8 MCAGCDQHILDRFILKALDRHWHS--KCLKCSDCHVPLAERCF-SRGESVYCKD-DFFKRFGTKCAACQLGIPPTQ   79 (169)
T ss_dssp             BBSSSSSBCCSSSCEECSSCEECT--TTSBCTTTCCBCCSCCE-ESSSCEECHH-HHHHHHSCBCTTTCCBCCTTS
T ss_pred             ccccCCCccCCcEEEEECCcEEcc--ccCccCCCCCcCCCCCc-ccCCeeeecc-cccccccccccccccccCCCc
Confidence            444444444443 58899999999  99999999999987765 7899999996 999999999999999998753

>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.35  E-value=1.6e-13  Score=89.73  Aligned_cols=49  Identities=16%  Similarity=0.468  Sum_probs=44.6

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCS   55 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~   55 (168)
                      +.|+|+.||++||+|..|+++|.+..|+.+||++||+.||.++|+++|.
T Consensus        28 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~   76 (77)
T 1g47_A           28 VNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI   76 (77)
T ss_dssp             EEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred             EEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence            3588999999999999999999888899999999999999999999986

>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B

Probab=99.35  E-value=2.4e-13  Score=87.38  Aligned_cols=63  Identities=19%  Similarity=0.394  Sum_probs=50.2

Q ss_pred             hhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccC
Q psy327           49 TLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSK  128 (168)
Q Consensus        49 ~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~  128 (168)
                      .+.++|..|+++|.+.                 +.+|.++|+.||+  +||+|..|+++|.+..|+..||++||.. |+.
T Consensus         9 ~~~~~C~~C~~~i~~~-----------------e~~~~~~~~~~H~--~CF~C~~C~~~L~~~~~~~~~g~~yC~~-~y~   68 (72)
T 3f6q_B            9 SASATCERCKGGFAPA-----------------EKIVNSNGELYHE--QCFVCAQCFQQFPEGLFYEFEGRKYCEH-DFQ   68 (72)
T ss_dssp             CTTCBCTTTCCBCCTT-----------------CEEEEETTEEEET--TTSSCTTTCCCCGGGCCEEETTEEECHH-HHH
T ss_pred             cCCccchhcCccccCC-----------------ceEEEeCcCeeCc--CCCcccCCCCCCCCCCeEeECCeEeCHH-HHH
Confidence            4556777777777632                 1147899999999  9999999999997778999999999996 776


Q ss_pred             CCC
Q psy327          129 GEP  131 (168)
Q Consensus       129 ~~~  131 (168)
                      +++
T Consensus        69 ~lf   71 (72)
T 3f6q_B           69 MLF   71 (72)
T ss_dssp             HHT
T ss_pred             Hhh
Confidence            554

>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.34  E-value=2.8e-13  Score=87.52  Aligned_cols=48  Identities=23%  Similarity=0.510  Sum_probs=45.0

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRC   54 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C   54 (168)
                      +.|+++.||++||+|..|+++|.+..|+.+|+++||..||.++|+|++
T Consensus        24 ~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~   71 (72)
T 1x4l_A           24 ISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS   71 (72)
T ss_dssp             EECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred             EEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence            578999999999999999999999899999999999999999998865

>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.33  E-value=4e-13  Score=88.43  Aligned_cols=50  Identities=22%  Similarity=0.467  Sum_probs=47.0

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccccc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA   56 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~   56 (168)
                      +.|+++.||++||+|..|+++|.+..|+.+|+++||+.||.++|+++|+.
T Consensus        30 v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s   79 (80)
T 2cuq_A           30 VTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS   79 (80)
T ss_dssp             EESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred             EEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence            57899999999999999999998889999999999999999999999863

>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=99.33  E-value=5.8e-13  Score=89.62  Aligned_cols=49  Identities=31%  Similarity=0.600  Sum_probs=46.0

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCS   55 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~   55 (168)
                      +.|+++.||++||+|..|+++|.+..|+..|+++||+.||.++|++++.
T Consensus        40 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~   88 (89)
T 1x64_A           40 VKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS   88 (89)
T ss_dssp             EESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred             EEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence            5789999999999999999999888899999999999999999999875

>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.32  E-value=3.1e-13  Score=88.99  Aligned_cols=50  Identities=22%  Similarity=0.515  Sum_probs=46.9

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccccc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA   56 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~   56 (168)
                      +.|+++.||++||+|..|+++|.+..|+.+|+++||+.||.++|+++|..
T Consensus        30 v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~   79 (80)
T 1x3h_A           30 LSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS   79 (80)
T ss_dssp             EEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred             EEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence            57889999999999999999998888999999999999999999999964

>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}

Probab=99.32  E-value=4.9e-13  Score=95.48  Aligned_cols=59  Identities=17%  Similarity=0.327  Sum_probs=50.7

Q ss_pred             cCCcccccCCCCCC-ceeeCCceeeCCCCceecCCCCccCC--CCCceecCCeeeecccccCCCC
Q psy327           70 RDLNINYFSSLPAG-QMSHEGQHWHATDSCFCCATCSLSLL--GRPFLPRAGVIFCSIACSKGEP  131 (168)
Q Consensus        70 ~~~C~~C~~~i~~~-~v~~~~~~~H~~~~CF~C~~C~~~l~--~~~f~~~dg~~~C~~~C~~~~~  131 (168)
                      .+.|..|+++|.+. +|.++++.||+  +||+|..|+++|.  +..|+..||++||.. ||.+++
T Consensus        61 ~~~C~~C~~~I~~~~~v~a~~~~wH~--~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~-cy~~~F  122 (123)
T 2l4z_A           61 WKRCAGCGGKIADRFLLYAMDSYWHS--RCLKCSSCQAQLGDIGTSSYTKSGMILCRN-DYIRLF  122 (123)
T ss_dssp             CSBBSSSSSBCCSSSEEEETTEEEET--TTSBCTTTCCBGGGTTCCCBCSSSCCBCHH-HHHHHC
T ss_pred             CCcCcCCCCCcCCcEEEEeCCcEEcc--cccCcCcCCCcccccCCceEEECCEEeCHH-Hhhhhc
Confidence            56788888888766 49999999999  9999999999995  678999999999996 776554

>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B

Probab=99.30  E-value=2.4e-13  Score=103.54  Aligned_cols=72  Identities=15%  Similarity=0.323  Sum_probs=59.3

Q ss_pred             CcccccCCCCCC-ceeeCCceeeCCCCceecCCCCccCC--CCCceecCCeeeecccccCCCCCC--CCCCCCCCCCCCC
Q psy327           72 LNINYFSSLPAG-QMSHEGQHWHATDSCFCCATCSLSLL--GRPFLPRAGVIFCSIACSKGEPPT--PSDSSGPGLRPQR  146 (168)
Q Consensus        72 ~C~~C~~~i~~~-~v~~~~~~~H~~~~CF~C~~C~~~l~--~~~f~~~dg~~~C~~~C~~~~~~~--~~~~~~~~~~~~~  146 (168)
                      .|..|+++|.+. +|.++++.||+  +||+|..|+++|.  +..|+..||++||.. ||.+++.+  .|..|+.+|.+..
T Consensus         7 ~C~~C~~~I~~~~~~~a~~~~wH~--~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~-cy~~~~~~~~~C~~C~~~I~~~e   83 (188)
T 1rut_X            7 RCAGCGGKIADRFLLYAMDSYWHS--RCLKCSSCQAQLGDIGTSSYTKSGMILCRN-DYIRLFGNSGACSACGQSIPASE   83 (188)
T ss_dssp             BBTTTCCBCCCSEEEEETTEEECG--GGCBCTTTCCBHHHHCSEEEEETTEEECHH-HHHHHHSCCEECTTTCCEECTTS
T ss_pred             cCccCCCEeCCceeEEecCcEecc--cCcccCCCCcccccCCceEEEeCCcccccc-ccccccccCCccccCCCccccCc
Confidence            444455444444 58999999999  9999999999996  578999999999996 88888877  7999999998643

>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.30  E-value=4.5e-13  Score=88.53  Aligned_cols=50  Identities=24%  Similarity=0.515  Sum_probs=45.5

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEE-CCeeccccchHhhhcccccc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYR-GDKLYCGRHHAETLKPRCSA   56 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~-~g~~yC~~cy~~~~~~~C~~   56 (168)
                      +.|+++.||++||+|..|+++|.+..|+.. ||++||+.||.++|+++|.+
T Consensus        30 ~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~   80 (81)
T 2dlo_A           30 LRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS   80 (81)
T ss_dssp             EEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred             EEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence            568899999999999999999998888776 79999999999999999964

>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.30  E-value=9.9e-13  Score=86.92  Aligned_cols=49  Identities=29%  Similarity=0.685  Sum_probs=46.3

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCS   55 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~   55 (168)
                      +.|+++.||++||+|..|+++|....|+.+++++||+.||.++|++++.
T Consensus        32 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~   80 (82)
T 1x63_A           32 VEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS   80 (82)
T ss_dssp             EECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred             EEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence            6789999999999999999999988999999999999999999998875

>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.29  E-value=3.5e-13  Score=88.78  Aligned_cols=49  Identities=27%  Similarity=0.567  Sum_probs=45.8

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCS   55 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~   55 (168)
                      +.|+++.||++||+|..|+++|.+..|+.+|+++||+.||.++|++++.
T Consensus        30 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~   78 (79)
T 1x62_A           30 VKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS   78 (79)
T ss_dssp             EECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred             EEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence            5789999999999999999999887899999999999999999998864

>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.29  E-value=9.8e-13  Score=84.47  Aligned_cols=48  Identities=27%  Similarity=0.672  Sum_probs=44.6

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRC   54 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C   54 (168)
                      +.|+++.||++||+|..|+++|.+..|+.+|+++||..||.++|+++.
T Consensus        20 ~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~   67 (70)
T 2d8x_A           20 IKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGP   67 (70)
T ss_dssp             EEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCS
T ss_pred             EEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCC
Confidence            578899999999999999999998889999999999999999988754

>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.28  E-value=2.4e-12  Score=84.88  Aligned_cols=48  Identities=25%  Similarity=0.294  Sum_probs=43.5

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhccccc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCS   55 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~   55 (168)
                      +.|+++.||++||+|..|+++|.+. ++.+||++||..||.++|+|++.
T Consensus        30 v~a~~~~~H~~CF~C~~C~~~L~~~-~f~~~g~~yC~~cy~~~f~p~~s   77 (79)
T 2cor_A           30 LIFKNDPYHPDHFNCANCGKELTAD-ARELKGELYCLPCHDKMGVSGPS   77 (79)
T ss_dssp             CCCSSSCCCTTTSBCSSSCCBCCTT-CEEETTEEECHHHHHTTSCCSSC
T ss_pred             EEECcceeCCCCCEeCCCCCccCCC-CEeECCEEeCHHHHHHhCCCCCC
Confidence            5789999999999999999999876 46999999999999999988654

>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.27  E-value=8.9e-13  Score=89.07  Aligned_cols=50  Identities=26%  Similarity=0.517  Sum_probs=47.2

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccccc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA   56 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~   56 (168)
                      +.|+++.||++||+|..|+++|....|+.+|+++||+.||.++|+++|..
T Consensus        31 v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~   80 (91)
T 2d8y_A           31 LLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNY   80 (91)
T ss_dssp             EECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCC
T ss_pred             EEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCc
Confidence            57899999999999999999998888999999999999999999999983

>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.25  E-value=2.2e-12  Score=83.17  Aligned_cols=50  Identities=24%  Similarity=0.543  Sum_probs=44.3

Q ss_pred             eccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhcccccc
Q psy327            6 SRAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSA   56 (168)
Q Consensus         6 ~~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~   56 (168)
                      .+.|+++.||++||+|..|+++|.+..|+.+|+++||+.||.++|. +|..
T Consensus        21 ~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~-~~~~   70 (72)
T 1x61_A           21 GVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE-SGPS   70 (72)
T ss_dssp             CEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH-TCSS
T ss_pred             EEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc-cCCC
Confidence            3578999999999999999999988889999999999999999874 4443

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A

Probab=99.24  E-value=2.4e-12  Score=98.15  Aligned_cols=67  Identities=22%  Similarity=0.404  Sum_probs=55.6

Q ss_pred             CcccccCCCC-CCceeeCCceeeCCCCceecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCCCCCC
Q psy327           72 LNINYFSSLP-AGQMSHEGQHWHATDSCFCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSGPG  141 (168)
Q Consensus        72 ~C~~C~~~i~-~~~v~~~~~~~H~~~~CF~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~~~~~  141 (168)
                      .|..|+++|. ++.|.++|+.||+  +||+|..|+++|.+..|+..||++||.. ||.+++++.|.+|+.+
T Consensus         9 ~C~~C~~~I~~~~~v~a~g~~wH~--~CF~C~~C~~~L~~~~~~~~~g~~yC~~-cy~~~f~~~c~~c~~~   76 (192)
T 1b8t_A            9 KCGVCQKAVYFAEEVQCEGSSFHK--SCFLCMVCKKNLDSTTVAVHGDEIYCKS-CYGKKYGPKGKGKGMG   76 (192)
T ss_dssp             ECTTTCCEECSSCCEEETTEEECT--TTCBCTTTCCBCCSSSEEEETTEEEEHH-HHHHHHSCCCCCCCCC
T ss_pred             cCccCCCeecceeEEEeCCceecC--CCCcCcccCCcCCCCeeEecCCEeeChh-hhHhhcCccccccccc
Confidence            3444555443 4468899999999  9999999999998888999999999996 9999999988877643

>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.22  E-value=7.1e-12  Score=81.34  Aligned_cols=46  Identities=13%  Similarity=0.422  Sum_probs=42.2

Q ss_pred             ccCCCCCCCCCCccccccccccC-CCceEEECCeeccccchHhhhcc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLV-DLIYFYRGDKLYCGRHHAETLKP   52 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~-~~~~~~~~g~~yC~~cy~~~~~~   52 (168)
                      +.|+++.||++||+|..|+++|. +..|+..++++||..||.+++..
T Consensus        20 v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~   66 (73)
T 1wig_A           20 LEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTE   66 (73)
T ss_dssp             BCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSS
T ss_pred             EEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcc
Confidence            57999999999999999999998 77899999999999999988663

>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.16  E-value=1.3e-11  Score=81.32  Aligned_cols=50  Identities=30%  Similarity=0.659  Sum_probs=44.0

Q ss_pred             ccCCCCCCCCCCccccccccccCC-CceE-EECCeeccccchHhhhcccccc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVD-LIYF-YRGDKLYCGRHHAETLKPRCSA   56 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~-~~~~-~~~g~~yC~~cy~~~~~~~C~~   56 (168)
                      +.|+++.||++||+|..|+++|.. ..|+ ..++++||+.||.++|++.+.+
T Consensus        30 ~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~sg   81 (81)
T 1x6a_A           30 MVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSSG   81 (81)
T ss_dssp             BCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSCC
T ss_pred             EEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCCC
Confidence            578999999999999999999964 5666 4899999999999999987753

>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B

Probab=99.15  E-value=6.1e-12  Score=80.71  Aligned_cols=45  Identities=16%  Similarity=0.490  Sum_probs=41.6

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHhhhc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLK   51 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~   51 (168)
                      +.++++.||++||+|..|+++|....|+..||++||+.||.++|+
T Consensus        28 ~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~   72 (72)
T 3f6q_B           28 VNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA   72 (72)
T ss_dssp             EEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred             EEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence            358899999999999999999988889999999999999998874

>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.12  E-value=7e-12  Score=83.15  Aligned_cols=48  Identities=23%  Similarity=0.393  Sum_probs=42.5

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceE--EECCeeccccchHhhhcccc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYF--YRGDKLYCGRHHAETLKPRC   54 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~--~~~g~~yC~~cy~~~~~~~C   54 (168)
                      +.|+++.||++||+|..|+++|....|+  .+||++||+.||.++|...+
T Consensus        31 v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~   80 (82)
T 2co8_A           31 LCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPS   80 (82)
T ss_dssp             CCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCC
T ss_pred             EEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCC
Confidence            5689999999999999999999988887  47999999999998876543

>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=2e-11  Score=79.63  Aligned_cols=42  Identities=24%  Similarity=0.647  Sum_probs=39.5

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECCeeccccchHh
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGDKLYCGRHHAE   48 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~   48 (168)
                      +.|+++.||++||+|..|+++|.+..|+..++++||+.||.+
T Consensus        35 ~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~   76 (77)
T 2egq_A           35 VAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK   76 (77)
T ss_dssp             EEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred             EEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence            578899999999999999999998899999999999999975

>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}

Probab=99.06  E-value=3.2e-11  Score=76.42  Aligned_cols=44  Identities=23%  Similarity=0.563  Sum_probs=40.1

Q ss_pred             eccCCCCCCC--CCCccccccccccCCCceEEECCeecc-ccchHhh
Q psy327            6 SRAGPNSCWH--PGCFTCSVCNELLVDLIYFYRGDKLYC-GRHHAET   49 (168)
Q Consensus         6 ~~~a~~~~~H--~~Cf~C~~C~~~L~~~~~~~~~g~~yC-~~cy~~~   49 (168)
                      .+.|+|+.||  ++||+|..|+++|.+..|+.+||++|| .+||.++
T Consensus        18 ~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~   64 (65)
T 2iyb_E           18 RVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM   64 (65)
T ss_dssp             EEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred             EEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence            3678999999  999999999999999899999999999 7888754

>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}

Probab=99.06  E-value=1.5e-11  Score=87.66  Aligned_cols=45  Identities=20%  Similarity=0.489  Sum_probs=41.3

Q ss_pred             ccCCCCCCCCCCccccccccccC--CCceEEECCeeccccchHhhhc
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLV--DLIYFYRGDKLYCGRHHAETLK   51 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~--~~~~~~~~g~~yC~~cy~~~~~   51 (168)
                      +.|+++.||++||+|..|+++|.  +..|+.+||++||+.||.++|+
T Consensus        77 v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg  123 (123)
T 2l4z_A           77 LYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG  123 (123)
T ss_dssp             EEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred             EEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence            57899999999999999999996  4689999999999999999875

>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=98.74  E-value=1.2e-09  Score=71.89  Aligned_cols=44  Identities=18%  Similarity=0.370  Sum_probs=36.7

Q ss_pred             ccCCCCCCCCCCccccccccccCCCceEEECC-eeccccchHhhh
Q psy327            7 RAGPNSCWHPGCFTCSVCNELLVDLIYFYRGD-KLYCGRHHAETL   50 (168)
Q Consensus         7 ~~a~~~~~H~~Cf~C~~C~~~L~~~~~~~~~g-~~yC~~cy~~~~   50 (168)
                      +.|+++.||++||+|..|+++|....++..++ .+||..||.+++
T Consensus        30 v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~   74 (81)
T 1v6g_A           30 VSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVS   74 (81)
T ss_dssp             EEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCS
T ss_pred             EEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccC
Confidence            57899999999999999999998666666555 579999987654

>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4

Probab=97.30  E-value=5.9e-05  Score=40.47  Aligned_cols=27  Identities=15%  Similarity=0.321  Sum_probs=21.4

Q ss_pred             CCcccccCCCC-CCceeeCCceeeCCCCce
Q psy327           71 DLNINYFSSLP-AGQMSHEGQHWHATDSCF   99 (168)
Q Consensus        71 ~~C~~C~~~i~-~~~v~~~~~~~H~~~~CF   99 (168)
                      +.|+.|++.|+ ++.|.+.|+.||.  .||
T Consensus         4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk--~CF   31 (31)
T 1zfo_A            4 PNCARCGKIVYPTEKVNCLDKFWHK--ACF   31 (31)
T ss_dssp             CBCSSSCSBCCGGGCCCSSSSCCCG--GGC
T ss_pred             CcCCccCCEEecceeEEECCeEecc--cCC
Confidence            45777777775 4678999999998  887

>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1

Probab=83.44  E-value=0.6  Score=27.96  Aligned_cols=34  Identities=26%  Similarity=0.630  Sum_probs=28.3

Q ss_pred             ecCCCCccCCCCCceecCCeeeecccccCCCCCC
Q psy327          100 CCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPT  133 (168)
Q Consensus       100 ~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~  133 (168)
                      -|..|+..+....-+..||+.||..+|....+..
T Consensus         9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~gH~~~   42 (55)
T 1jjd_A            9 ACEPCLCNVDPSKAIDRNGLYYCSEACADGHTGG   42 (55)
T ss_dssp             SSTTCCCCBCTTTSEESSSCEESSHHHHHTSCSS
T ss_pred             cCCCCeeEechHHhhhcCCeEEehHHHHccCCCC
Confidence            4788999998888999999999977798876543

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=82.09  E-value=0.37  Score=32.87  Aligned_cols=47  Identities=19%  Similarity=0.559  Sum_probs=32.3

Q ss_pred             CCccccccccccCCC------ceEEECCeeccccchHhhhc--cccccCcccccc
Q psy327           17 GCFTCSVCNELLVDL------IYFYRGDKLYCGRHHAETLK--PRCSACDEVRVQ   63 (168)
Q Consensus        17 ~Cf~C~~C~~~L~~~------~~~~~~g~~yC~~cy~~~~~--~~C~~C~~~I~~   63 (168)
                      +=+.|.+|...+.+.      .....=|..||..|..+.+.  ..|..|.+.+..
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   60 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   60 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence            347889998777432      13456688999999876543  568788877753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d1x3ha1	35	Leupaxin {Human (Homo sapiens) [TaxId: 9606]}	99.0
d1g47a2	35	Pinch (particularly interesting new Cys-His) prote	98.94
d1b8ta4	49	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	98.57
d2cuqa2	35	Four and a half LIM domains 3, FHL3 {Human (Homo s	98.51
d2d8za2	32	Four and a half LIM domains protein 2, FHL2 {Human	98.48
d2dara2	45	PDZ and LIM domain protein 5, Enigma {Human (Homo	98.38
d1g47a2	35	Pinch (particularly interesting new Cys-His) prote	98.36
d2cuqa1	32	Four and a half LIM domains 3, FHL3 {Human (Homo s	98.34
d2dj7a1	31	Actin-binding LIM protein 3, abLIM-3 {Human (Homo	98.33
d1x4la1	29	Four and a half LIM domains protein 2, FHL2 {Human	98.31
d1x3ha2	32	Leupaxin {Human (Homo sapiens) [TaxId: 9606]}	98.27
d1x63a1	37	Four and a half LIM domains protein 1, FHL-1 {Huma	98.27
d2d8ya2	42	Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}	98.25
d2dloa1	35	Thyroid receptor interacting protein 6, TRIP6 {Hum	98.24
d1u5sb1	31	Pinch (particularly interesting new Cys-His) prote	98.24
d1x68a1	29	Four and a half LIM domains protein 5, FHL-5 {Huma	98.23
d2d8za2	32	Four and a half LIM domains protein 2, FHL2 {Human	98.2
d1v6ga1	41	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	98.2
d1imla2	48	Cysteine-rich (intestinal) protein, CRP, CRIP {Rat	98.19
d1ibia2	31	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	98.17
d1x4ka1	32	Four and a half LIM domains protein 2, FHL2 {Human	98.1
d1wyha1	32	Four and a half LIM domains 3, FHL3 {Human (Homo s	98.06
d1u5sb2	35	Pinch (particularly interesting new Cys-His) prote	97.99
d1b8ta2	65	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	97.95
d2cuqa1	32	Four and a half LIM domains 3, FHL3 {Human (Homo s	97.91
d2dara1	32	PDZ and LIM domain protein 5, Enigma {Human (Homo	97.9
d1ibia2	31	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	97.84
d2cu8a2	33	Cysteine-rich (intestinal) protein, CRP, CRIP {Hum	97.78
d2cura1	31	Four and a half LIM domains protein 1, FHL-1 {Huma	97.78
d2d8za1	26	Four and a half LIM domains protein 2, FHL2 {Human	97.75
d1b8ta4	49	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	97.73
d2cu8a2	33	Cysteine-rich (intestinal) protein, CRP, CRIP {Hum	97.72
d1x3ha2	32	Leupaxin {Human (Homo sapiens) [TaxId: 9606]}	97.72
d2d8xa2	26	Pinch (particularly interesting new Cys-His) prote	97.68
d2cura2	26	Four and a half LIM domains protein 1, FHL-1 {Huma	97.64
d2dj7a2	36	Actin-binding LIM protein 3, abLIM-3 {Human (Homo	97.58
d1imla2	48	Cysteine-rich (intestinal) protein, CRP, CRIP {Rat	97.58
d1x61a2	32	Thyroid receptor interacting protein 6, TRIP6 {Hum	97.58
d2cu8a1	30	Cysteine-rich (intestinal) protein, CRP, CRIP {Hum	97.55
d2cura1	31	Four and a half LIM domains protein 1, FHL-1 {Huma	97.49
d2dj7a1	31	Actin-binding LIM protein 3, abLIM-3 {Human (Homo	97.46
d2dloa2	33	Thyroid receptor interacting protein 6, TRIP6 {Hum	97.45
d1wyha1	32	Four and a half LIM domains 3, FHL3 {Human (Homo s	97.45
d1x4ka1	32	Four and a half LIM domains protein 2, FHL2 {Human	97.4
d2dara1	32	PDZ and LIM domain protein 5, Enigma {Human (Homo	97.38
d1x6aa1	34	Lim domain kinase 2 {Human (Homo sapiens) [TaxId:	97.33
d1a7ia2	32	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	97.28
d1rutx1	30	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	97.27
d1x63a2	32	Four and a half LIM domains protein 1, FHL-1 {Huma	97.26
d2d8ya2	42	Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}	97.26
d1j2oa1	30	Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 1	97.22
d1u5sb2	35	Pinch (particularly interesting new Cys-His) prote	97.2
d2d8ya1	35	Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}	97.19
d1b8ta3	43	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	97.12
d1x64a2	31	PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus m	97.08
d1b8ta2	65	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	96.98
d1x62a2	35	PDZ and LIM domain protein 1 Elfin {Human (Homo sa	96.96
d2dloa2	33	Thyroid receptor interacting protein 6, TRIP6 {Hum	96.91
d1x61a2	32	Thyroid receptor interacting protein 6, TRIP6 {Hum	96.82
d2co8a2	36	Nedd9 interacting protein with calponin homology,	96.8
d1zfoa_	30	LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}	96.74
d1x64a1	45	PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus m	96.7
d1wiga1	32	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	96.61
d1x4ka2	27	Four and a half LIM domains protein 2, FHL2 {Human	96.43
d1x62a1	31	PDZ and LIM domain protein 1 Elfin {Human (Homo sa	96.4
d1rutx2	34	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	96.3
d1rutx3	31	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	96.27
d1x64a2	31	PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus m	96.21
d1wyha2	27	Four and a half LIM domains 3, FHL3 {Human (Homo s	96.13
d2cupa2	31	Four and a half LIM domains protein 1, FHL-1 {Huma	96.04
d2cupa3	27	Four and a half LIM domains protein 1, FHL-1 {Huma	96.03
d1rutx4	33	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	95.87
d1ibia1	28	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	95.8
d1a7ia2	32	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	95.78
d2cupa2	31	Four and a half LIM domains protein 1, FHL-1 {Huma	95.73
d1x68a2	34	Four and a half LIM domains protein 5, FHL-5 {Huma	95.64
d1x63a2	32	Four and a half LIM domains protein 1, FHL-1 {Huma	95.61
d1rutx4	33	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	95.58
d1x3ha1	35	Leupaxin {Human (Homo sapiens) [TaxId: 9606]}	95.36
d1x62a1	31	PDZ and LIM domain protein 1 Elfin {Human (Homo sa	94.88
d2d8xa1	32	Pinch (particularly interesting new Cys-His) prote	94.82
d2cora1	31	Pinch (particularly interesting new Cys-His) prote	94.66
d2dj7a2	36	Actin-binding LIM protein 3, abLIM-3 {Human (Homo	94.52
d1x61a1	27	Thyroid receptor interacting protein 6, TRIP6 {Hum	94.35
d1a7ia1	28	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	94.33
d2cora1	31	Pinch (particularly interesting new Cys-His) prote	94.17
d2dara2	45	PDZ and LIM domain protein 5, Enigma {Human (Homo	94.08
d2dloa1	35	Thyroid receptor interacting protein 6, TRIP6 {Hum	94.08
d1x4la2	30	Four and a half LIM domains protein 2, FHL2 {Human	93.51
d1x6aa2	34	Lim domain kinase 2 {Human (Homo sapiens) [TaxId:	93.45
d1b8ta1	35	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	92.9
d2co8a2	36	Nedd9 interacting protein with calponin homology,	92.18
d1x6aa2	34	Lim domain kinase 2 {Human (Homo sapiens) [TaxId:	92.16
d2d8ya1	35	Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}	91.97
d2d8xa1	32	Pinch (particularly interesting new Cys-His) prote	91.8
d2cora2	35	Pinch (particularly interesting new Cys-His) prote	90.89
d1x68a2	34	Four and a half LIM domains protein 5, FHL-5 {Huma	89.59
d1rutx2	34	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	89.35
d1v6ga2	40	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	88.38
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	87.75
d1j2oa2	33	Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 1	86.67
d1x63a1	37	Four and a half LIM domains protein 1, FHL-1 {Huma	84.39
d1v6ga2	40	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	83.36

>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Leupaxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=4.6e-11  Score=65.26  Aligned_cols=35  Identities=23%  Similarity=0.743  Sum_probs=30.7

Q ss_pred             cchHhhhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCce
Q psy327           44 RHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCF   99 (168)
Q Consensus        44 ~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF   99 (168)
                      +||.++|+++|.+|+++|.+                   .+|+|+|+.||+  +||
T Consensus         1 ~DY~~~fapkC~~C~~~I~g-------------------~~v~Al~~~wHp--eCF   35 (35)
T d1x3ha1           1 KDFLAMFSPKCGGCNRPVLE-------------------NYLSAMDTVWHP--ECF   35 (35)
T ss_dssp             CCCCCCCSCBCTTTCCBCCS-------------------SCEEETTEEECT--TTC
T ss_pred             CcHHHHhChhhhhcCCcccc-------------------hheeecCCccCc--ccC
Confidence            47888999999999999974                   369999999999  898

>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.3e-10  Score=63.30  Aligned_cols=34  Identities=18%  Similarity=0.561  Sum_probs=32.8

Q ss_pred             ccccccccccCCCceEEECCeeccccchHhhhcc
Q psy327           19 FTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKP   52 (168)
Q Consensus        19 f~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~   52 (168)
                      |+|+.|+++|.+..|+++||++||+.||.++|+|
T Consensus         1 F~C~~C~~~f~~~~F~e~~G~pYCe~~Y~~lFAP   34 (35)
T d1g47a2           1 FVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAP   34 (35)
T ss_dssp             CCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCC
T ss_pred             CCCCCCcCCCCCCCeEEECCEecChHhHHhhcCC
Confidence            7999999999999999999999999999999986

>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.57  E-value=2e-08  Score=58.09  Aligned_cols=42  Identities=17%  Similarity=0.366  Sum_probs=38.4

Q ss_pred             cccccccccCCCceEEECCeeccccchHhhhccccccCcccc
Q psy327           20 TCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVR   61 (168)
Q Consensus        20 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I   61 (168)
                      +|..|++.|......++|++|||+.||.++|+|+..+.++.-
T Consensus         1 KC~~C~k~Lds~t~~ehdg~~YCk~CY~k~fGPKG~g~G~ga   42 (49)
T d1b8ta4           1 RCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGA   42 (49)
T ss_dssp             BCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCCCC
T ss_pred             ChhhcCCccCCCcccccCCcccchhhhhhccCCCccCcccCc
Confidence            689999999998999999999999999999999998887543

>d2cuqa2 g.39.1.3 (A:8-42) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.6e-08  Score=53.87  Aligned_cols=35  Identities=29%  Similarity=0.744  Sum_probs=30.5

Q ss_pred             cchHhhhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCce
Q psy327           44 RHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCF   99 (168)
Q Consensus        44 ~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF   99 (168)
                      +||+++|+++|..|+++|..                   +.|++.++.||.  +||
T Consensus         1 PCyE~kfa~~C~~Ckk~It~-------------------GGvtY~dqpWHk--eCF   35 (35)
T d2cuqa2           1 PCYENKFAPRCARCSKTLTQ-------------------GGVTYRDQPWHR--ECL   35 (35)
T ss_dssp             CCCCCCSSCCCTTTCCCCCS-------------------CCEESSSSEECT--TTC
T ss_pred             CchHHHHHHHHhhcCCcccc-------------------CceeecCCcchh--hhC
Confidence            58889999999999999973                   248999999999  898

>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.5e-08  Score=52.27  Aligned_cols=32  Identities=22%  Similarity=0.465  Sum_probs=29.9

Q ss_pred             cccccccccCCCceEEECCeeccccchHhhhc
Q psy327           20 TCSVCNELLVDLIYFYRGDKLYCGRHHAETLK   51 (168)
Q Consensus        20 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~   51 (168)
                      .|..|+++|.++.|..+|++|||..||..+|+
T Consensus         1 ~C~~C~~~L~GQry~~rd~~PyC~~Cf~~lfA   32 (32)
T d2d8za2           1 VCTACRKQLSGQRFTARDDFAYCLNCFCDLYA   32 (32)
T ss_dssp             BCSSSCCBCTTSCCEESSSSEECHHHHHHHTC
T ss_pred             CcccCCccccCceeeecCCCeehHHhhHhhcC
Confidence            48899999999999999999999999999874

>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 5, Enigma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=7.8e-08  Score=54.27  Aligned_cols=28  Identities=14%  Similarity=0.300  Sum_probs=22.9

Q ss_pred             cCCcccccCCCCCCceeeCCceeeCCCCce
Q psy327           70 RDLNINYFSSLPAGQMSHEGQHWHATDSCF   99 (168)
Q Consensus        70 ~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF   99 (168)
                      .|.|..|.++|.+..|+|+|+.|||  +||
T Consensus        18 ~P~C~~C~~pI~g~~vtAlgk~WHP--EhF   45 (45)
T d2dara2          18 TPMCAHCNQVIRGPFLVALGKSWHP--EEF   45 (45)
T ss_dssp             CCBBSSSCCBCCSCEEEETTEEECT--TTC
T ss_pred             CeeccccCCcccCceeeecCCccCc--CCC
Confidence            3567777777777789999999999  887

>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=2.2e-08  Score=54.29  Aligned_cols=34  Identities=21%  Similarity=0.295  Sum_probs=30.4

Q ss_pred             eecCCCCccCCCCCceecCCeeeecccccCCCCCC
Q psy327           99 FCCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPT  133 (168)
Q Consensus        99 F~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~  133 (168)
                      |+|+.|+++|.+..|++.||++||.. +|..++++
T Consensus         1 F~C~~C~~~f~~~~F~e~~G~pYCe~-~Y~~lFAP   34 (35)
T d1g47a2           1 FVCAQCFQQFPEGLFYEFEGRKYCEH-DFQMLFAP   34 (35)
T ss_dssp             CCCTTTCCCCGGGCSEEETTEEECHH-HHHHHCCC
T ss_pred             CCCCCCcCCCCCCCeEEECCEecChH-hHHhhcCC
Confidence            78999999999999999999999996 77777664

>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=9.3e-08  Score=49.43  Aligned_cols=32  Identities=22%  Similarity=0.473  Sum_probs=29.8

Q ss_pred             cccccccccCCCceEEECCeeccccchHhhhc
Q psy327           20 TCSVCNELLVDLIYFYRGDKLYCGRHHAETLK   51 (168)
Q Consensus        20 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~   51 (168)
                      .|+.|+++|.++.|..+|.+|||..||-.+|+
T Consensus         1 vCt~Ck~~LaGqrFTSrde~pYC~~Cfg~LfA   32 (32)
T d2cuqa1           1 VCTGCQTPLAGQQFTSRDEDPYCVACFGELFA   32 (32)
T ss_dssp             BCSSSCCBCTTCCEEECSSSEEEHHHHHHHTT
T ss_pred             CccccCccccCCccccCCCCccHHHHhHhhcC
Confidence            58999999999999999999999999998874

>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 3, abLIM-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.7e-07  Score=48.33  Aligned_cols=31  Identities=19%  Similarity=0.526  Sum_probs=27.9

Q ss_pred             cccccccccCCCceEEECCeeccccchHhhhc
Q psy327           20 TCSVCNELLVDLIYFYRGDKLYCGRHHAETLK   51 (168)
Q Consensus        20 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~   51 (168)
                      +|..|++.|.+ .|..+||.|||+.||+..|+
T Consensus         1 kC~~C~~vL~g-EYm~kdG~PyCe~DY~~~FG   31 (31)
T d2dj7a1           1 KCQTCSVILTG-EYISKDGVPYCESDYHAQFG   31 (31)
T ss_dssp             BCSSSCCBCSS-CCEEETTEEECTTHHHHHTT
T ss_pred             CccccCccccc-eeecCCCCcccHHHHHHhcC
Confidence            68999999965 79999999999999999874

>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.9e-07  Score=47.19  Aligned_cols=29  Identities=34%  Similarity=0.962  Sum_probs=26.6

Q ss_pred             cccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCce
Q psy327           54 CSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCF   99 (168)
Q Consensus        54 C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF   99 (168)
                      |..|.+||.+++|.+|               |++.++.||.  +||
T Consensus         1 C~~C~kPItg~gg~ky---------------isFE~R~WH~--~CF   29 (29)
T d1x4la1           1 CAGCTNPISGLGGTKY---------------ISFEERQWHN--DCF   29 (29)
T ss_dssp             BTTTTBCCCCSSSCSC---------------EECSSCEECT--TTC
T ss_pred             CCccCCcccccCCceE---------------EEeecccccc--cCC
Confidence            7889999999999886               9999999998  898

>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Leupaxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.6e-07  Score=49.30  Aligned_cols=31  Identities=16%  Similarity=0.350  Sum_probs=28.9

Q ss_pred             cccccccccCCCceEEECCeeccccchHhhh
Q psy327           20 TCSVCNELLVDLIYFYRGDKLYCGRHHAETL   50 (168)
Q Consensus        20 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~   50 (168)
                      +|..|.+++.+..|++.||+|||+.+|.++.
T Consensus         1 VC~~C~~PF~~~~Fy~~~g~PyCe~HyH~~~   31 (32)
T d1x3ha2           1 VCGDCFTSFSTGSFFELDGRPFCELHYHHRR   31 (32)
T ss_dssp             BCSSSCCBSCSSCCEESSSCEECHHHHHHHH
T ss_pred             CcCccCCcCCCCCeEeECCccchHHhhhhhc
Confidence            5899999999999999999999999999874

>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.5e-07  Score=51.28  Aligned_cols=37  Identities=27%  Similarity=0.748  Sum_probs=31.6

Q ss_pred             cchHhhhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCce
Q psy327           44 RHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCF   99 (168)
Q Consensus        44 ~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF   99 (168)
                      .||.+.|+++|..|.++|.+  |.+               .|.+.|++||-  .||
T Consensus         1 kCy~~~~a~~C~~C~k~I~~--G~k---------------~veykg~~WHe--~CF   37 (37)
T d1x63a1           1 KCTTREDSPKCKGCFKAIVA--GDQ---------------NVEYKGTVWHK--DCF   37 (37)
T ss_dssp             CCCSCCCSCBCSSSCCBCCS--SSC---------------EEECSSCEEET--TTC
T ss_pred             CccccccCcccccCCCccCC--CCe---------------EeEeCCccchh--ccC
Confidence            47888899999999999974  554               49999999997  898

>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Eplin, LIMA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1e-07  Score=53.28  Aligned_cols=34  Identities=29%  Similarity=0.566  Sum_probs=31.8

Q ss_pred             cccccccccCCCceEEECCeeccccchHhhhccc
Q psy327           20 TCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPR   53 (168)
Q Consensus        20 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~   53 (168)
                      +|+.|+..|...+|...+|.+||++||.++|.++
T Consensus         1 rC~~C~~~Ls~~~yas~~G~lYCkpHf~qLF~~k   34 (42)
T d2d8ya2           1 RCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK   34 (42)
T ss_dssp             BCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCC
T ss_pred             CcCcCCCCccCCcchhhCCEeccHHHHHHHHHhh
Confidence            6999999999999999999999999999998764

>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.8e-07  Score=49.84  Aligned_cols=34  Identities=21%  Similarity=0.549  Sum_probs=25.5

Q ss_pred             cchHhhhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCce
Q psy327           44 RHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCF   99 (168)
Q Consensus        44 ~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF   99 (168)
                      +||... ..+|..|+++|+                   +.+|.|+|+.|||  .||
T Consensus         2 ~Cy~~t-lEkC~~C~~~I~-------------------driLrA~Gk~yHP--~CF   35 (35)
T d2dloa1           2 GCYVAT-LEKCATCSQPIL-------------------DRILRAMGKAYHP--GCF   35 (35)
T ss_dssp             CCCCSS-CCBCTTTCCBCC-------------------SCCEEETTEEECT--TTC
T ss_pred             hhHHHH-HHHHHHhchHHH-------------------HHHHHHhCCCCCC--CCC
Confidence            455444 457777777776                   3479999999999  898

>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.7e-07  Score=48.43  Aligned_cols=25  Identities=12%  Similarity=0.263  Sum_probs=19.2

Q ss_pred             cCCcccccCCCCCCceeeCCceeeC
Q psy327           70 RDLNINYFSSLPAGQMSHEGQHWHA   94 (168)
Q Consensus        70 ~~~C~~C~~~i~~~~v~~~~~~~H~   94 (168)
                      .|.|..|.++|.+++|+|+|+.||+
T Consensus         5 ~p~C~~C~~PI~~~~vtAlgk~WHp   29 (31)
T d1u5sb1           5 VPICGACRRPIEGRVVNAMGKQWHV   29 (31)
T ss_dssp             CCEETTTTEECCSCEECCTTSBEET
T ss_pred             CcchhhcCCchhhhHhhhhccccCC
Confidence            3456666666666789999999999

>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 5, FHL-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.6e-07  Score=46.60  Aligned_cols=29  Identities=28%  Similarity=0.834  Sum_probs=26.6

Q ss_pred             cccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCce
Q psy327           54 CSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCF   99 (168)
Q Consensus        54 C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF   99 (168)
                      |..|.+||.+++|.+|               |.+.++.||.  +||
T Consensus         1 C~~C~kPItg~gG~k~---------------isFedR~WH~--~CF   29 (29)
T d1x68a1           1 CVACSKPISGLTGAKF---------------ICFQDSQWHS--ECF   29 (29)
T ss_dssp             CTTTCCCCCTTTTCCE---------------EEETTEEEEG--GGC
T ss_pred             CccccccccccCCceE---------------EEeehhhccc--ccC
Confidence            7889999999999886               9999999998  887

>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.2e-07  Score=49.65  Aligned_cols=32  Identities=25%  Similarity=0.554  Sum_probs=28.3

Q ss_pred             ecCCCCccCCCCCceecCCeeeecccccCCCCC
Q psy327          100 CCATCSLSLLGRPFLPRAGVIFCSIACSKGEPP  132 (168)
Q Consensus       100 ~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~  132 (168)
                      .|..|+++|.|+.|+.+|++|||.. |+..+++
T Consensus         1 ~C~~C~~~L~GQry~~rd~~PyC~~-Cf~~lfA   32 (32)
T d2d8za2           1 VCTACRKQLSGQRFTARDDFAYCLN-CFCDLYA   32 (32)
T ss_dssp             BCSSSCCBCTTSCCEESSSSEECHH-HHHHHTC
T ss_pred             CcccCCccccCceeeecCCCeehHH-hhHhhcC
Confidence            4889999999999999999999995 9976653

>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 2, abLIM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=3.8e-07  Score=50.44  Aligned_cols=34  Identities=24%  Similarity=0.483  Sum_probs=29.7

Q ss_pred             cchHhhhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCc
Q psy327           44 RHHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSC   98 (168)
Q Consensus        44 ~cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~C   98 (168)
                      .||.++|+.+|..|++.|.+                   ++|.|.+++|||  .|
T Consensus         8 ~DYq~~fG~~C~~C~~~ItG-------------------~V~~Ag~~~yHP--~C   41 (41)
T d1v6ga1           8 LDYQRLYGTRCFSCDQFIEG-------------------EVVSALGKTYHP--DC   41 (41)
T ss_dssp             SCGGGSCCCBCTTTCCBCCS-------------------CCEEETTEEECT--TT
T ss_pred             ccHHHHhCcccccccCEeee-------------------eeeEecCcccCC--CC
Confidence            57899999999999999973                   379999999999  66

>d1imla2 g.39.1.3 (A:29-76) Cysteine-rich (intestinal) protein, CRP, CRIP {Rat (Rattus rattus) [TaxId: 10117]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=98.19  E-value=4.9e-07  Score=51.61  Aligned_cols=37  Identities=19%  Similarity=0.290  Sum_probs=33.1

Q ss_pred             cccccccccCCCceEEECCeecc-ccchHhhhcccccc
Q psy327           20 TCSVCNELLVDLIYFYRGDKLYC-GRHHAETLKPRCSA   56 (168)
Q Consensus        20 ~C~~C~~~L~~~~~~~~~g~~yC-~~cy~~~~~~~C~~   56 (168)
                      +|..|++.|......+.|++||| ++||..+|+|+=..
T Consensus         1 kC~~C~K~L~sg~~aeHdg~pYC~k~CY~~~FGPkG~g   38 (48)
T d1imla2           1 KCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFG   38 (48)
T ss_dssp             BCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSS
T ss_pred             CchhcCcCcCCCChhhcCCcccccccchhhccCCCccc
Confidence            68999999999999999999999 78999999986443

>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=98.17  E-value=3.7e-07  Score=46.19  Aligned_cols=30  Identities=23%  Similarity=0.532  Sum_probs=28.1

Q ss_pred             ccccccccccCCCceEEECCeeccccchHh
Q psy327           19 FTCSVCNELLVDLIYFYRGDKLYCGRHHAE   48 (168)
Q Consensus        19 f~C~~C~~~L~~~~~~~~~g~~yC~~cy~~   48 (168)
                      |+|+.|++.|.......+||.+||+.||.+
T Consensus         1 frca~cgk~lestt~adkdgeiyck~cyak   30 (31)
T d1ibia2           1 FRCAKCGKSLESTTLTEKEGEIYCKGCYAK   30 (31)
T ss_dssp             EECSSSCCEECSSCSEEETTEEECHHHHHH
T ss_pred             CccccccCccccceeeccCCcEEEeeeeec
Confidence            799999999998888999999999999975

>d1x4ka1 g.39.1.3 (A:35-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=9.2e-07  Score=45.83  Aligned_cols=32  Identities=9%  Similarity=0.316  Sum_probs=29.6

Q ss_pred             cccccccccCCCceEEECCeeccccchHhhhc
Q psy327           20 TCSVCNELLVDLIYFYRGDKLYCGRHHAETLK   51 (168)
Q Consensus        20 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~   51 (168)
                      .|..|.++|+..+|..+++..||.+||++.|+
T Consensus         1 ~C~~C~qPIGtksfipk~~~~yCvpCyE~kfA   32 (32)
T d1x4ka1           1 ICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHA   32 (32)
T ss_dssp             CCSSSCCCCCSSSEEEETTEEEEHHHHHHHTS
T ss_pred             CcccccCcccccccccCCCCceEeecchhhcC
Confidence            37899999999999999999999999999874

>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.3e-06  Score=45.24  Aligned_cols=32  Identities=19%  Similarity=0.322  Sum_probs=29.6

Q ss_pred             cccccccccCCCceEEECCeeccccchHhhhc
Q psy327           20 TCSVCNELLVDLIYFYRGDKLYCGRHHAETLK   51 (168)
Q Consensus        20 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~   51 (168)
                      .|..|.++|+.++|..+++..||.+||+++|+
T Consensus         1 ~C~~C~qPIGtkSFip~~~~~yCvpCYE~kfA   32 (32)
T d1wyha1           1 LCSGCEQPLGSRSFVPDKGAHYCVPCYENKFA   32 (32)
T ss_dssp             BCTTTCCBTTTSCEEEETTEEEEHHHHHHHTS
T ss_pred             CcccccCcccccccccCCCcEEEEeccccccC
Confidence            37899999999999999999999999999874

>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=2e-06  Score=44.89  Aligned_cols=34  Identities=21%  Similarity=0.509  Sum_probs=31.7

Q ss_pred             ccccccccccCCCceEEECCeeccccchHhhhcc
Q psy327           19 FTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKP   52 (168)
Q Consensus        19 f~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~   52 (168)
                      |+|+.|.+|+-+...++++|..||+.+|.++|+.
T Consensus         1 FvCA~CekPF~G~rhyE~~g~ayCe~Hy~qLfg~   34 (35)
T d1u5sb2           1 FVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGD   34 (35)
T ss_dssp             CBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSC
T ss_pred             CcccccCCccCCchhhhhcCchHHHHHHHHHhcc
Confidence            7999999999888899999999999999999863

>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.95  E-value=2.3e-06  Score=52.00  Aligned_cols=41  Identities=22%  Similarity=0.407  Sum_probs=36.1

Q ss_pred             cccccccccCCCceEEECCeeccccchHhhhccccccCccc
Q psy327           20 TCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEV   60 (168)
Q Consensus        20 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~   60 (168)
                      .|..|++.|........++++||+.||.++|+|+=..-+..
T Consensus         1 ~C~~C~K~LdS~~~~eh~~e~YCk~CY~k~fGPkG~G~G~g   41 (65)
T d1b8ta2           1 LCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMG   41 (65)
T ss_dssp             BCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCC
T ss_pred             CchhcCCccCCCccccCCCcccchhhhccccCCCccccccc
Confidence            48899999999999999999999999999999987665543

>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=9.5e-07  Score=45.54  Aligned_cols=31  Identities=26%  Similarity=0.557  Sum_probs=27.6

Q ss_pred             ecCCCCccCCCCCceecCCeeeecccccCCCC
Q psy327          100 CCATCSLSLLGRPFLPRAGVIFCSIACSKGEP  131 (168)
Q Consensus       100 ~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~  131 (168)
                      .|+.|.++|.|+.|..+|+.|||.+ |+..++
T Consensus         1 vCt~Ck~~LaGqrFTSrde~pYC~~-Cfg~Lf   31 (32)
T d2cuqa1           1 VCTGCQTPLAGQQFTSRDEDPYCVA-CFGELF   31 (32)
T ss_dssp             BCSSSCCBCTTCCEEECSSSEEEHH-HHHHHT
T ss_pred             CccccCccccCCccccCCCCccHHH-HhHhhc
Confidence            4899999999999999999999995 986554

>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 5, Enigma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.5e-06  Score=44.09  Aligned_cols=32  Identities=16%  Similarity=0.421  Sum_probs=29.1

Q ss_pred             cccccccccCCCceEEECCeeccccchHhhhc
Q psy327           20 TCSVCNELLVDLIYFYRGDKLYCGRHHAETLK   51 (168)
Q Consensus        20 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~   51 (168)
                      .|+.|+.+|.+..|.+.+|++||+.||.+.|+
T Consensus         1 nCa~C~~sL~d~gFVEE~g~lYCe~Cye~ffA   32 (32)
T d2dara1           1 NCAHCKNTMAYIGFVEEKGALYCELCYEKFFA   32 (32)
T ss_dssp             BCSSSCCBCSSSCBEESSSCEECHHHHHHHTS
T ss_pred             CcccccccHhhcceeeecCcEeHHHHHHHhcC
Confidence            38899999999999999999999999998753

>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=97.84  E-value=1.8e-06  Score=43.59  Aligned_cols=30  Identities=33%  Similarity=0.713  Sum_probs=27.3

Q ss_pred             eecCCCCccCCCCCceecCCeeeecccccCC
Q psy327           99 FCCATCSLSLLGRPFLPRAGVIFCSIACSKG  129 (168)
Q Consensus        99 F~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~  129 (168)
                      |+|+.|++.|.+......||.+||+. ||.+
T Consensus         1 frca~cgk~lestt~adkdgeiyck~-cyak   30 (31)
T d1ibia2           1 FRCAKCGKSLESTTLTEKEGEIYCKG-CYAK   30 (31)
T ss_dssp             EECSSSCCEECSSCSEEETTEEECHH-HHHH
T ss_pred             CccccccCccccceeeccCCcEEEee-eeec
Confidence            89999999999999999999999995 8854

>d2cu8a2 g.39.1.3 (A:38-70) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=8.8e-06  Score=42.11  Aligned_cols=32  Identities=19%  Similarity=0.249  Sum_probs=28.8

Q ss_pred             cccccccccCCCceEEECCeeccc-cchHhhhc
Q psy327           20 TCSVCNELLVDLIYFYRGDKLYCG-RHHAETLK   51 (168)
Q Consensus        20 ~C~~C~~~L~~~~~~~~~g~~yC~-~cy~~~~~   51 (168)
                      +|..|++.|......+.||+|||. +||..+|+
T Consensus         1 kCekC~ktL~~G~HaEH~gkPYC~~PCY~aLFG   33 (33)
T d2cu8a2           1 KCERCSKTLTPGGHAEHDGKPFCHKPCYATLFG   33 (33)
T ss_dssp             BCSSSCCBCCTTSCEEETTEEECTTTHHHHHSC
T ss_pred             CchhcccccCCCCccccCCCcCcCcchHHhhcC
Confidence            588999999999999999999997 69998874

>d2cura1 g.39.1.3 (A:33-63) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=4.9e-06  Score=42.33  Aligned_cols=29  Identities=21%  Similarity=0.449  Sum_probs=27.1

Q ss_pred             cccccccccCCCceEEECCeeccccchHh
Q psy327           20 TCSVCNELLVDLIYFYRGDKLYCGRHHAE   48 (168)
Q Consensus        20 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~   48 (168)
                      .|..|+++|.++.|...++++||.+||..
T Consensus         1 vC~~C~K~Lag~rFTa~eDq~yCVdCYK~   29 (31)
T d2cura1           1 VCVTCSKKLAGQRFTAVEDQYYCVDCYKN   29 (31)
T ss_dssp             BCTTTCCBCTTSCEEECSSCEEEHHHHHH
T ss_pred             CcccccchhcCceeEEecceEEEeeeecc
Confidence            48999999999999999999999999975

>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.73  E-value=6.1e-06  Score=47.39  Aligned_cols=39  Identities=26%  Similarity=0.445  Sum_probs=34.7

Q ss_pred             ecCCCCccCCCCCceecCCeeeecccccCCCCCCCCCCCC
Q psy327          100 CCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSDSSG  139 (168)
Q Consensus       100 ~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~~~~  139 (168)
                      +|..|++.|++....+.|++|||+. ||.+++.+..-+-+
T Consensus         1 KC~~C~k~Lds~t~~ehdg~~YCk~-CY~k~fGPKG~g~G   39 (49)
T d1b8ta4           1 RCAKCGKSLESTTLADKDGEIYCKG-CYAKNFGPKGFGFG   39 (49)
T ss_dssp             BCTTTCCBCCSSSEEEETTEEEEHH-HHHHHTCCCCCCCC
T ss_pred             ChhhcCCccCCCcccccCCcccchh-hhhhccCCCccCcc
Confidence            6999999998888999999999996 99999998877555

>d2cu8a2 g.39.1.3 (A:38-70) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=4.1e-06  Score=43.40  Aligned_cols=32  Identities=25%  Similarity=0.406  Sum_probs=28.4

Q ss_pred             ecCCCCccCCCCCceecCCeeeecccccCCCC
Q psy327          100 CCATCSLSLLGRPFLPRAGVIFCSIACSKGEP  131 (168)
Q Consensus       100 ~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~  131 (168)
                      +|..|++.|......+.||+|||...||..+|
T Consensus         1 kCekC~ktL~~G~HaEH~gkPYC~~PCY~aLF   32 (33)
T d2cu8a2           1 KCERCSKTLTPGGHAEHDGKPFCHKPCYATLF   32 (33)
T ss_dssp             BCSSSCCBCCTTSCEEETTEEECTTTHHHHHS
T ss_pred             CchhcccccCCCCccccCCCcCcCcchHHhhc
Confidence            58999999998899999999999988886554

>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Leupaxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=6e-06  Score=43.13  Aligned_cols=28  Identities=25%  Similarity=0.570  Sum_probs=25.3

Q ss_pred             ecCCCCccCCCCCceecCCeeeeccccc
Q psy327          100 CCATCSLSLLGRPFLPRAGVIFCSIACS  127 (168)
Q Consensus       100 ~C~~C~~~l~~~~f~~~dg~~~C~~~C~  127 (168)
                      +|..|.+++.+..|++.||+|||..+++
T Consensus         1 VC~~C~~PF~~~~Fy~~~g~PyCe~HyH   28 (32)
T d1x3ha2           1 VCGDCFTSFSTGSFFELDGRPFCELHYH   28 (32)
T ss_dssp             BCSSSCCBSCSSCCEESSSCEECHHHHH
T ss_pred             CcCccCCcCCCCCeEeECCccchHHhhh
Confidence            5899999999999999999999997654

>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 3, abLIM-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=2.1e-05  Score=41.43  Aligned_cols=27  Identities=19%  Similarity=0.443  Sum_probs=21.7

Q ss_pred             CCcccccCCCC-CCceeeCCceeeCCCCce
Q psy327           71 DLNINYFSSLP-AGQMSHEGQHWHATDSCF   99 (168)
Q Consensus        71 ~~C~~C~~~i~-~~~v~~~~~~~H~~~~CF   99 (168)
                      ..|++|++.|. ++.+.|+++.||.  +||
T Consensus         9 ~~CagCg~eik~gQaL~ALdkqWH~--~CF   36 (36)
T d2dj7a2           9 SHCAGCKEEIKHGQSLLALDKQWHV--SCF   36 (36)
T ss_dssp             SCCTTTCCCCSSSCCEEETTEEECT--TTC
T ss_pred             ccccccchhhhCCceeeeeecceee--eeC
Confidence            35777777775 4569999999999  998

>d1imla2 g.39.1.3 (A:29-76) Cysteine-rich (intestinal) protein, CRP, CRIP {Rat (Rattus rattus) [TaxId: 10117]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=97.58  E-value=1e-05  Score=45.97  Aligned_cols=37  Identities=16%  Similarity=0.321  Sum_probs=31.8

Q ss_pred             ecCCCCccCCCCCceecCCeeeecccccCCCCCCCCC
Q psy327          100 CCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPSD  136 (168)
Q Consensus       100 ~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~~  136 (168)
                      +|..|++.|+.....+.|++|||...||.++|.+.=-
T Consensus         1 kC~~C~K~L~sg~~aeHdg~pYC~k~CY~~~FGPkG~   37 (48)
T d1imla2           1 KCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGF   37 (48)
T ss_dssp             BCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCS
T ss_pred             CchhcCcCcCCCChhhcCCcccccccchhhccCCCcc
Confidence            6999999999999999999999944599998877533

>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=1.5e-05  Score=40.56  Aligned_cols=30  Identities=23%  Similarity=0.503  Sum_probs=27.6

Q ss_pred             cccccccccCCCceEEECCeeccccchHhh
Q psy327           20 TCSVCNELLVDLIYFYRGDKLYCGRHHAET   49 (168)
Q Consensus        20 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~   49 (168)
                      .|..|+..|.++.|+..+++.||++||...
T Consensus         1 vC~tC~~kLRGqpFYAvekkayCE~CYi~t   30 (32)
T d1x61a2           1 VCSTCRAQLRGQHFYAVERRAYCEGCYVAT   30 (32)
T ss_dssp             BCSSSCCBCTTSCEEESSSCEEEHHHHHHH
T ss_pred             CeeEeCceecCCcceEeeccccccceeeee
Confidence            488999999999999999999999999754

>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=2.5e-05  Score=39.91  Aligned_cols=27  Identities=22%  Similarity=0.409  Sum_probs=22.3

Q ss_pred             CCcccccCCCC-CCceeeCCceeeCCCCce
Q psy327           71 DLNINYFSSLP-AGQMSHEGQHWHATDSCF   99 (168)
Q Consensus        71 ~~C~~C~~~i~-~~~v~~~~~~~H~~~~CF   99 (168)
                      +.|+.|+++++ ++.+..+|+.||.  .|+
T Consensus         3 ~~CprC~K~VYfaEk~~~lgk~WHk--~Cl   30 (30)
T d2cu8a1           3 SKCPKCDKTVYFAEKVSSLGKDWHK--FCL   30 (30)
T ss_dssp             CBCTTTCCBCCTTTEEEETTEEEET--TTC
T ss_pred             CcCCCCCCceeeHHhhccCCccccc--ccC
Confidence            56888888885 6889999999998  664

>d2cura1 g.39.1.3 (A:33-63) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=1.8e-05  Score=40.22  Aligned_cols=28  Identities=36%  Similarity=0.783  Sum_probs=25.8

Q ss_pred             ecCCCCccCCCCCceecCCeeeecccccC
Q psy327          100 CCATCSLSLLGRPFLPRAGVIFCSIACSK  128 (168)
Q Consensus       100 ~C~~C~~~l~~~~f~~~dg~~~C~~~C~~  128 (168)
                      .|..|.+.|.|+.|...+++.||- +||+
T Consensus         1 vC~~C~K~Lag~rFTa~eDq~yCV-dCYK   28 (31)
T d2cura1           1 VCVTCSKKLAGQRFTAVEDQYYCV-DCYK   28 (31)
T ss_dssp             BCTTTCCBCTTSCEEECSSCEEEH-HHHH
T ss_pred             CcccccchhcCceeEEecceEEEe-eeec
Confidence            489999999999999999999999 4986

>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 3, abLIM-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=3.3e-05  Score=39.56  Aligned_cols=27  Identities=33%  Similarity=0.821  Sum_probs=23.4

Q ss_pred             ecCCCCccCCCCCceecCCeeeeccccc
Q psy327          100 CCATCSLSLLGRPFLPRAGVIFCSIACS  127 (168)
Q Consensus       100 ~C~~C~~~l~~~~f~~~dg~~~C~~~C~  127 (168)
                      +|..|++.|.++ |+..||.|||..|+.
T Consensus         1 kC~~C~~vL~gE-Ym~kdG~PyCe~DY~   27 (31)
T d2dj7a1           1 KCQTCSVILTGE-YISKDGVPYCESDYH   27 (31)
T ss_dssp             BCSSSCCBCSSC-CEEETTEEECTTHHH
T ss_pred             CccccCccccce-eecCCCCcccHHHHH
Confidence            589999999886 899999999998543

>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=1.9e-05  Score=41.25  Aligned_cols=32  Identities=19%  Similarity=0.399  Sum_probs=28.3

Q ss_pred             cccccccccCCCceEE-ECCeeccccchHhhhc
Q psy327           20 TCSVCNELLVDLIYFY-RGDKLYCGRHHAETLK   51 (168)
Q Consensus        20 ~C~~C~~~L~~~~~~~-~~g~~yC~~cy~~~~~   51 (168)
                      +|..|++.|.+..|.+ .++++||.+||+++|+
T Consensus         1 tCvvC~~~LDGvPFtvD~~n~i~Cv~DyHrkfA   33 (33)
T d2dloa2           1 TCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFA   33 (33)
T ss_dssp             BCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTT
T ss_pred             CeeEcCcccCCCcEEEcCCCCEeehhhhhhhcC
Confidence            5889999999999964 7899999999999874

>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=1.3e-05  Score=41.32  Aligned_cols=32  Identities=28%  Similarity=0.705  Sum_probs=28.4

Q ss_pred             ecCCCCccCCCCCceecCCeeeecccccCCCCC
Q psy327          100 CCATCSLSLLGRPFLPRAGVIFCSIACSKGEPP  132 (168)
Q Consensus       100 ~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~  132 (168)
                      .|..|..+|+.+.|+++++..||.+ ||.+.++
T Consensus         1 ~C~~C~qPIGtkSFip~~~~~yCvp-CYE~kfA   32 (32)
T d1wyha1           1 LCSGCEQPLGSRSFVPDKGAHYCVP-CYENKFA   32 (32)
T ss_dssp             BCTTTCCBTTTSCEEEETTEEEEHH-HHHHHTS
T ss_pred             CcccccCcccccccccCCCcEEEEe-ccccccC
Confidence            3889999999999999999999997 9987653

>d1x4ka1 g.39.1.3 (A:35-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=1.5e-05  Score=41.17  Aligned_cols=32  Identities=22%  Similarity=0.643  Sum_probs=28.3

Q ss_pred             ecCCCCccCCCCCceecCCeeeecccccCCCCC
Q psy327          100 CCATCSLSLLGRPFLPRAGVIFCSIACSKGEPP  132 (168)
Q Consensus       100 ~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~  132 (168)
                      .|..|..+|+...|+.+|+..||-+ ||.+.++
T Consensus         1 ~C~~C~qPIGtksfipk~~~~yCvp-CyE~kfA   32 (32)
T d1x4ka1           1 ICHRCQQPIGTKSFIPKDNQNFCVP-CYEKQHA   32 (32)
T ss_dssp             CCSSSCCCCCSSSEEEETTEEEEHH-HHHHHTS
T ss_pred             CcccccCcccccccccCCCCceEee-cchhhcC
Confidence            3889999999999999999999997 9987653

>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 5, Enigma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=1.7e-05  Score=40.89  Aligned_cols=31  Identities=23%  Similarity=0.591  Sum_probs=27.6

Q ss_pred             ecCCCCccCCCCCceecCCeeeecccccCCCC
Q psy327          100 CCATCSLSLLGRPFLPRAGVIFCSIACSKGEP  131 (168)
Q Consensus       100 ~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~  131 (168)
                      .|+.|.++|....|++..|++||.. ||.+.+
T Consensus         1 nCa~C~~sL~d~gFVEE~g~lYCe~-Cye~ff   31 (32)
T d2dara1           1 NCAHCKNTMAYIGFVEEKGALYCEL-CYEKFF   31 (32)
T ss_dssp             BCSSSCCBCSSSCBEESSSCEECHH-HHHHHT
T ss_pred             CcccccccHhhcceeeecCcEeHHH-HHHHhc
Confidence            4889999999999999999999995 987654

>d1x6aa1 g.39.1.3 (A:8-41) Lim domain kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Lim domain kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=2.8e-05  Score=40.53  Aligned_cols=33  Identities=15%  Similarity=0.282  Sum_probs=27.2

Q ss_pred             chHhhhccccccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCc
Q psy327           45 HHAETLKPRCSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSC   98 (168)
Q Consensus        45 cy~~~~~~~C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~C   98 (168)
                      +|..+|+..|..|.+.|.+.                   +|.|.+..|||  +|
T Consensus         2 dYw~kfge~C~~C~~~itGp-------------------vMvAG~~K~HP--EC   34 (34)
T d1x6aa1           2 DYWGKFGEFCHGCSLLMTGP-------------------FMVAGEFKYHP--EC   34 (34)
T ss_dssp             CSSCCSSCBCTTTCCBCCSC-------------------CBCCTTCCBCT--TS
T ss_pred             cHHHHHHHHhhhhHhhcccc-------------------eeeecccccCC--CC
Confidence            57778888888888877743                   69999999999  76

>d1a7ia2 g.39.1.3 (A:36-67) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=97.28  E-value=7.7e-05  Score=37.99  Aligned_cols=31  Identities=19%  Similarity=0.406  Sum_probs=28.1

Q ss_pred             ccccccccCCCceEEECCeeccccchHhhhc
Q psy327           21 CSVCNELLVDLIYFYRGDKLYCGRHHAETLK   51 (168)
Q Consensus        21 C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~   51 (168)
                      |-.|++.|........++.+||+.||-+.|+
T Consensus         2 C~~C~K~LdStTva~h~~eiYCKsCygkkyg   32 (32)
T d1a7ia2           2 CMVCRKNLDSTTVAIHDAEVYCKSCYGKKYG   32 (32)
T ss_dssp             CSSSCCEECSSCCEEETTEEECSHHHHHHCC
T ss_pred             chhhhhccCcceeeeecceEEehhhccccCC
Confidence            7789999999888999999999999988764

>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=5.7e-05  Score=38.69  Aligned_cols=25  Identities=12%  Similarity=0.316  Sum_probs=16.2

Q ss_pred             cccccCCCCCC-ceeeCCceeeCCCCce
Q psy327           73 NINYFSSLPAG-QMSHEGQHWHATDSCF   99 (168)
Q Consensus        73 C~~C~~~i~~~-~v~~~~~~~H~~~~CF   99 (168)
                      |++|+++|.+. .+.++++.||.  .|.
T Consensus         5 CaGC~~~I~DRflL~v~dr~WH~--~CL   30 (30)
T d1rutx1           5 CAGCGGKIADRFLLYAMDSYWHS--RCL   30 (30)
T ss_dssp             BTTTCCBCCCSEEEEETTEEECG--GGC
T ss_pred             cCCCCCccchhhhhccchhhhhh--hhC
Confidence            44444444343 58999999997  663

>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.0001  Score=37.02  Aligned_cols=32  Identities=28%  Similarity=0.716  Sum_probs=29.2

Q ss_pred             cccccccccCCCceEEECCeeccccchHhhhc
Q psy327           20 TCSVCNELLVDLIYFYRGDKLYCGRHHAETLK   51 (168)
Q Consensus        20 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~   51 (168)
                      +|+.|++.+...+|+.++...||..|+...|+
T Consensus         1 tcs~ckq~igsgsffpkg~d~ycvtche~kfa   32 (32)
T d1x63a2           1 TCSNCKQVIGTGSFFPKGEDFYCVTCHETKFA   32 (32)
T ss_dssp             CCSSSCCCCTTSCEEEETTEEEEHHHHHHHTS
T ss_pred             CcchhhhhcccccccCCCCcEEEEEeeccccC
Confidence            58999999999999999999999999988763

>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Eplin, LIMA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=2.1e-05  Score=43.63  Aligned_cols=34  Identities=18%  Similarity=0.276  Sum_probs=30.1

Q ss_pred             ecCCCCccCCCCCceecCCeeeecccccCCCCCCC
Q psy327          100 CCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTP  134 (168)
Q Consensus       100 ~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~  134 (168)
                      +|+.|++.|.-..|...+|.+||++ ++++++.+.
T Consensus         1 rC~~C~~~Ls~~~yas~~G~lYCkp-Hf~qLF~~k   34 (42)
T d2d8ya2           1 RCSYCNNKLSLGTYASLHGRIYCKP-HFNQLFKSK   34 (42)
T ss_dssp             BCTTTCCBCCTTTCCCSSSCCCCHH-HHHHHSCCC
T ss_pred             CcCcCCCCccCCcchhhCCEeccHH-HHHHHHHhh
Confidence            6999999999889999999999996 888877654

>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Rhombotin-2 (Lmo2)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.00011  Score=37.52  Aligned_cols=24  Identities=17%  Similarity=0.302  Sum_probs=16.2

Q ss_pred             cccccCCCCCC-ceeeCCceeeCCCCc
Q psy327           73 NINYFSSLPAG-QMSHEGQHWHATDSC   98 (168)
Q Consensus        73 C~~C~~~i~~~-~v~~~~~~~H~~~~C   98 (168)
                      |++|+++|.+. .+.++++.||.  +|
T Consensus         6 CaGC~~~I~DRflL~a~Dr~WH~--~C   30 (30)
T d1j2oa1           6 CGGCQQNIGDRYFLKAIDQYWHE--DC   30 (30)
T ss_dssp             BSSSCSCBCSSEEEECSSSEECT--TT
T ss_pred             cCCCCCcchHHHHHHHHHHHHhc--CC
Confidence            44444444444 48999999997  65

>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=7.7e-05  Score=38.72  Aligned_cols=32  Identities=28%  Similarity=0.639  Sum_probs=27.5

Q ss_pred             eecCCCCccCCCCCceecCCeeeecccccCCCC
Q psy327           99 FCCATCSLSLLGRPFLPRAGVIFCSIACSKGEP  131 (168)
Q Consensus        99 F~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~  131 (168)
                      |+|+.|.+++.|...+++.|..||..+ +.+++
T Consensus         1 FvCA~CekPF~G~rhyE~~g~ayCe~H-y~qLf   32 (35)
T d1u5sb2           1 FVCAKCEKPFLGHRHYERKGLAYCETH-YNQLF   32 (35)
T ss_dssp             CBCTTTCCBCSSSCCEEETTEEECHHH-HHHHC
T ss_pred             CcccccCCccCCchhhhhcCchHHHHH-HHHHh
Confidence            789999999999999999999999974 44433

>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Eplin, LIMA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00012  Score=38.97  Aligned_cols=27  Identities=19%  Similarity=0.381  Sum_probs=22.2

Q ss_pred             CCcccccCCCC-CCceeeCCceeeCCCCce
Q psy327           71 DLNINYFSSLP-AGQMSHEGQHWHATDSCF   99 (168)
Q Consensus        71 ~~C~~C~~~i~-~~~v~~~~~~~H~~~~CF   99 (168)
                      +.|..|++.|+ .+.|.+.|+.||.  .||
T Consensus         8 ~kC~~C~K~VY~~E~~~a~g~~~Hk--~CF   35 (35)
T d2d8ya1           8 ETCVECQKTVYPMERLLANQQVFHI--SCF   35 (35)
T ss_dssp             CBCTTTCCBCCTTSEEECSSSEEET--TTC
T ss_pred             cccccCCCEEeeeeeEecCCeehhh--ccC
Confidence            46777777775 5779999999998  898

>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.12  E-value=7.4e-05  Score=41.74  Aligned_cols=27  Identities=30%  Similarity=0.500  Sum_probs=22.7

Q ss_pred             CCcccccCCCC-CCceeeCCceeeCCCCce
Q psy327           71 DLNINYFSSLP-AGQMSHEGQHWHATDSCF   99 (168)
Q Consensus        71 ~~C~~C~~~i~-~~~v~~~~~~~H~~~~CF   99 (168)
                      +.|..|++.|+ ++.+.+.|+.||.  .||
T Consensus        16 ~kC~~C~k~VY~~E~~~~~g~~~Hk--~CF   43 (43)
T d1b8ta3          16 DGCPRCGQAVYAAEKVIGAGKSWHK--SCF   43 (43)
T ss_dssp             EECTTTSCEECSSSCEEETTEEECT--TTC
T ss_pred             CcCccCCCEeeHHHHhhcCCCcccc--CCC
Confidence            56888888875 5789999999999  898

>d1x64a2 g.39.1.3 (A:53-83) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 3, PDLIM3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.08  E-value=0.00019  Score=36.28  Aligned_cols=29  Identities=34%  Similarity=0.702  Sum_probs=26.1

Q ss_pred             cccccccccCCCceEEECCeeccccchHh
Q psy327           20 TCSVCNELLVDLIYFYRGDKLYCGRHHAE   48 (168)
Q Consensus        20 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~   48 (168)
                      .|++|+..|....+|..++++||+.+...
T Consensus         1 vC~dCg~NLKqrG~Ffv~~~lyCE~HAr~   29 (31)
T d1x64a2           1 VCADCNLNLKQKGYFFVEGELYCETHARA   29 (31)
T ss_dssp             CCSSSCCCTTTSCCEEETTEEECHHHHHH
T ss_pred             CccccccChhhcceEEeccEEeehhhhhc
Confidence            48999999999999999999999988654

>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.98  E-value=0.00023  Score=42.95  Aligned_cols=35  Identities=17%  Similarity=0.374  Sum_probs=30.9

Q ss_pred             ecCCCCccCCCCCceecCCeeeecccccCCCCCCCC
Q psy327          100 CCATCSLSLLGRPFLPRAGVIFCSIACSKGEPPTPS  135 (168)
Q Consensus       100 ~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~~~~~  135 (168)
                      .|..|++.|++....+.++.|||+. ||.+++.+.=
T Consensus         1 ~C~~C~K~LdS~~~~eh~~e~YCk~-CY~k~fGPkG   35 (65)
T d1b8ta2           1 LCMVCKKNLDSTTVAVHGDEIYCKS-CYGKKYGPKG   35 (65)
T ss_dssp             BCTTTCCBCCSSSEEEETTEEEEHH-HHHHHHSCCC
T ss_pred             CchhcCCccCCCccccCCCcccchh-hhccccCCCc
Confidence            3899999999999999999999996 9998887663

>d1x62a2 g.39.1.3 (A:8-42) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 1 Elfin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00025  Score=36.82  Aligned_cols=27  Identities=11%  Similarity=0.229  Sum_probs=20.2

Q ss_pred             CCcccccCCCCCCceeeCCceeeCCCCce
Q psy327           71 DLNINYFSSLPAGQMSHEGQHWHATDSCF   99 (168)
Q Consensus        71 ~~C~~C~~~i~~~~v~~~~~~~H~~~~CF   99 (168)
                      |.|-.|+.-|.+.+|.+.++.+||  +||
T Consensus         9 p~CdkCg~GIVG~~VK~rDk~rHP--eCf   35 (35)
T d1x62a2           9 PMCDKCGTGIVGVFVKLRDRHRHP--ECY   35 (35)
T ss_dssp             CCCSSSCCCCCSSCEECSSCEECT--TTT
T ss_pred             ccccccCCCcEeEEEEeccccCCC--CCC
Confidence            445555555555689999999999  897

>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00011  Score=38.28  Aligned_cols=30  Identities=27%  Similarity=0.520  Sum_probs=25.5

Q ss_pred             ecCCCCccCCCCCceec-CCeeeecccccCC
Q psy327          100 CCATCSLSLLGRPFLPR-AGVIFCSIACSKG  129 (168)
Q Consensus       100 ~C~~C~~~l~~~~f~~~-dg~~~C~~~C~~~  129 (168)
                      .|..|++.|+|.+|..+ ++++||.+|++++
T Consensus         1 tCvvC~~~LDGvPFtvD~~n~i~Cv~DyHrk   31 (33)
T d2dloa2           1 TCVVCHRGLDGIPFTVDATSQIHCIEDFHRK   31 (33)
T ss_dssp             BCSSSCCBCTTSCEECCTTCCCEEHHHHHHH
T ss_pred             CeeEcCcccCCCcEEEcCCCCEeehhhhhhh
Confidence            48899999999999975 8999999865543

>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00028  Score=35.73  Aligned_cols=28  Identities=29%  Similarity=0.666  Sum_probs=25.4

Q ss_pred             ecCCCCccCCCCCceecCCeeeecccccC
Q psy327          100 CCATCSLSLLGRPFLPRAGVIFCSIACSK  128 (168)
Q Consensus       100 ~C~~C~~~l~~~~f~~~dg~~~C~~~C~~  128 (168)
                      .|..|+..|.|+.|+-.+.+.||.+ ||.
T Consensus         1 vC~tC~~kLRGqpFYAvekkayCE~-CYi   28 (32)
T d1x61a2           1 VCSTCRAQLRGQHFYAVERRAYCEG-CYV   28 (32)
T ss_dssp             BCSSSCCBCTTSCEEESSSCEEEHH-HHH
T ss_pred             CeeEeCceecCCcceEeeccccccc-eee
Confidence            4889999999999999999999995 873

>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Nedd9 interacting protein with calponin homology, NICAL (MICAL1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00027  Score=37.69  Aligned_cols=27  Identities=30%  Similarity=0.458  Sum_probs=21.7

Q ss_pred             CCcccccCCCC-CCceeeCCceeeCCCCce
Q psy327           71 DLNINYFSSLP-AGQMSHEGQHWHATDSCF   99 (168)
Q Consensus        71 ~~C~~C~~~i~-~~~v~~~~~~~H~~~~CF   99 (168)
                      +.|..|.+.|+ .+.|.+.|+.||.  .||
T Consensus         9 ~~C~~C~K~VY~~Erl~a~g~~yHk--~CF   36 (36)
T d2co8a2           9 DLCALCGEHLYVLERLCVNGHFFHR--SCF   36 (36)
T ss_dssp             CBCSSSCCBCCTTTBCCBTTBCCBT--TTC
T ss_pred             CcccccCCEEeeeeEEEecCcEecc--ccC
Confidence            45777777775 4679999999999  898

>d1zfoa_ g.39.1.4 (A:) LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LASP-1
domain: LASP-1
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.74  E-value=0.00019  Score=36.11  Aligned_cols=27  Identities=15%  Similarity=0.321  Sum_probs=19.9

Q ss_pred             CCcccccCCCC-CCceeeCCceeeCCCCce
Q psy327           71 DLNINYFSSLP-AGQMSHEGQHWHATDSCF   99 (168)
Q Consensus        71 ~~C~~C~~~i~-~~~v~~~~~~~H~~~~CF   99 (168)
                      +.|+.|++.++ .+.|.-+|+.||.  .||
T Consensus         3 ~~CaRC~k~VYp~Ekl~ClDk~WHK--~CF   30 (30)
T d1zfoa_           3 PNCARCGKIVYPTEKVNCLDKFWHK--ACF   30 (30)
T ss_dssp             CBCSSSCSBCCGGGCCCSSSSCCCG--GGC
T ss_pred             CcccccCCccccHHHhhhhHHHHhh--ccC
Confidence            34666666664 3568999999998  887

>d1x64a1 g.39.1.3 (A:8-52) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 3, PDLIM3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.70  E-value=0.00049  Score=37.99  Aligned_cols=28  Identities=18%  Similarity=0.220  Sum_probs=21.5

Q ss_pred             cCCcccccCCCCCCceeeCCceeeCCCCce
Q psy327           70 RDLNINYFSSLPAGQMSHEGQHWHATDSCF   99 (168)
Q Consensus        70 ~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF   99 (168)
                      -|.|-.|+.-|.+.+|.+.|+.+||  +||
T Consensus        18 LP~CdkCg~GIVG~~VK~rDK~rHP--eCf   45 (45)
T d1x64a1          18 MPLCDKCGSGIVGAVVKARDKYRHP--ECF   45 (45)
T ss_dssp             CCBCTTTCCBCCSCCEESSSCEECT--TTC
T ss_pred             CccccccCCCcEEEEEEeccccCCC--CCC
Confidence            3455566666666689999999999  998

>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 2, abLIM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00046  Score=34.84  Aligned_cols=25  Identities=16%  Similarity=0.239  Sum_probs=19.4

Q ss_pred             CcccccCCCCCCceeeCCceeeCCCCc
Q psy327           72 LNINYFSSLPAGQMSHEGQHWHATDSC   98 (168)
Q Consensus        72 ~C~~C~~~i~~~~v~~~~~~~H~~~~C   98 (168)
                      -|..|.+-|.+.++.+.+++|||  .|
T Consensus         7 gC~~C~~~ItGkVLEAG~khYHP--~C   31 (32)
T d1wiga1           7 GCDSCEKYITGRVLEAGEKHYHP--SC   31 (32)
T ss_dssp             SCSSSCCCCSSCCBCCSSCCBCT--TT
T ss_pred             hhhhhhhhhhhhhhhccccccCC--CC
Confidence            35666666667789999999999  55

>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.001  Score=32.39  Aligned_cols=27  Identities=37%  Similarity=1.069  Sum_probs=20.0

Q ss_pred             cccCcccccccCCccccCCcccccCCCCCCceeeCCceeeCCCCce
Q psy327           54 CSACDEVRVQVGGHRTRDLNINYFSSLPAGQMSHEGQHWHATDSCF   99 (168)
Q Consensus        54 C~~C~~~I~~~~g~~~~~~C~~C~~~i~~~~v~~~~~~~H~~~~CF   99 (168)
                      |..|.+.|.+  |.+               .|.+.|..||-  .||
T Consensus         1 C~~C~ktiMP--Gsr---------------Kme~kG~~WHE--tCF   27 (27)
T d1x4ka2           1 CQECKKTIMP--GTR---------------KMEYKGSSWHE--TCF   27 (27)
T ss_dssp             BSSSCCCCCS--SSC---------------EEEETTEEEET--TTT
T ss_pred             CccccccccC--Cce---------------eecccCCcccc--ccC
Confidence            5567777764  333               59999999996  787

>d1x62a1 g.39.1.3 (A:43-73) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 1 Elfin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.00023  Score=36.09  Aligned_cols=29  Identities=31%  Similarity=0.701  Sum_probs=25.9

Q ss_pred             cccccccccCCCceEEECCeeccccchHh
Q psy327           20 TCSVCNELLVDLIYFYRGDKLYCGRHHAE   48 (168)
Q Consensus        20 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~   48 (168)
                      .|++|+..|....+|..++++||+.+...
T Consensus         1 vC~dCg~NLKqrG~Ffve~~lyCE~HAr~   29 (31)
T d1x62a1           1 VCTDCGTNLKQKGHFFVEDQIYCEKHARE   29 (31)
T ss_dssp             SCSSSCCCHHHHCCEESSSCEECHHHHHH
T ss_pred             CccccccChhhcceEEeccEEehhhhhhh
Confidence            48999999988889999999999988654

>d1rutx2 g.39.1.3 (X:49-82) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.30  E-value=0.0011  Score=34.27  Aligned_cols=32  Identities=16%  Similarity=0.434  Sum_probs=27.4

Q ss_pred             ccccccccc--CCCceEEECCeeccccchHhhhc
Q psy327           20 TCSVCNELL--VDLIYFYRGDKLYCGRHHAETLK   51 (168)
Q Consensus        20 ~C~~C~~~L--~~~~~~~~~g~~yC~~cy~~~~~   51 (168)
                      +|+-|+..|  .+.+.|.+.|-++|+.||.++|+
T Consensus         1 KCscC~~~LgeiG~s~ytk~~mILCk~DY~rlFG   34 (34)
T d1rutx2           1 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG   34 (34)
T ss_dssp             BCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS
T ss_pred             CCcchhcChhhccchheecCCEEEEchhHHHhcC
Confidence            578888888  45678999999999999999874

>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.27  E-value=0.00061  Score=34.95  Aligned_cols=14  Identities=36%  Similarity=0.864  Sum_probs=12.9

Q ss_pred             ceeeCCceeeCCCCce
Q psy327           84 QMSHEGQHWHATDSCF   99 (168)
Q Consensus        84 ~v~~~~~~~H~~~~CF   99 (168)
                      +|.|.+..||.  .||
T Consensus        18 VmRA~~~VyHl--~CF   31 (31)
T d1rutx3          18 VMRAQGNVYHL--KCF   31 (31)
T ss_dssp             EEEETTEEECG--GGC
T ss_pred             heecccceeee--ccC
Confidence            69999999999  888

>d1x64a2 g.39.1.3 (A:53-83) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 3, PDLIM3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.21  E-value=0.0012  Score=33.24  Aligned_cols=26  Identities=27%  Similarity=0.736  Sum_probs=23.4

Q ss_pred             ecCCCCccCCCCCceecCCeeeeccc
Q psy327          100 CCATCSLSLLGRPFLPRAGVIFCSIA  125 (168)
Q Consensus       100 ~C~~C~~~l~~~~f~~~dg~~~C~~~  125 (168)
                      .|+.|+..|...+++..++++||..+
T Consensus         1 vC~dCg~NLKqrG~Ffv~~~lyCE~H   26 (31)
T d1x64a2           1 VCADCNLNLKQKGYFFVEGELYCETH   26 (31)
T ss_dssp             CCSSSCCCTTTSCCEEETTEEECHHH
T ss_pred             CccccccChhhcceEEeccEEeehhh
Confidence            48999999998899999999999863

>d1wyha2 g.39.1.3 (A:8-34) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0015  Score=31.71  Aligned_cols=14  Identities=43%  Similarity=1.165  Sum_probs=12.4

Q ss_pred             ceeeCCceeeCCCCce
Q psy327           84 QMSHEGQHWHATDSCF   99 (168)
Q Consensus        84 ~v~~~~~~~H~~~~CF   99 (168)
                      .|.+.|..||-  .||
T Consensus        14 Kmey~G~sWHE--~CF   27 (27)
T d1wyha2          14 KLEYGGQTWHE--HCF   27 (27)
T ss_dssp             EECSTTCCEET--TTC
T ss_pred             cccccCccccc--ccC
Confidence            59999999996  887

>d2cupa2 g.39.1.3 (A:35-65) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0018  Score=32.42  Aligned_cols=28  Identities=29%  Similarity=0.750  Sum_probs=24.9

Q ss_pred             ecCCCCccCCCCCceecCCeeeecccccC
Q psy327          100 CCATCSLSLLGRPFLPRAGVIFCSIACSK  128 (168)
Q Consensus       100 ~C~~C~~~l~~~~f~~~dg~~~C~~~C~~  128 (168)
                      +|..|-.+|..+.|...|++++|.+ |..
T Consensus         1 RCaKC~hpLA~E~F~aKd~kI~C~K-c~s   28 (31)
T d2cupa2           1 RCAKCLHPLANETFVAKDNKILCNK-CTT   28 (31)
T ss_dssp             CCSSSCCCTTSSCCEEETTEEECHH-HHT
T ss_pred             CchhhccccccCcccccCCeEeecc-ccc
Confidence            5888999999999999999999996 654

>d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0025  Score=30.85  Aligned_cols=25  Identities=16%  Similarity=0.599  Sum_probs=17.7

Q ss_pred             cccccCCC--CCCceeeCCceeeCCCCce
Q psy327           73 NINYFSSL--PAGQMSHEGQHWHATDSCF   99 (168)
Q Consensus        73 C~~C~~~i--~~~~v~~~~~~~H~~~~CF   99 (168)
                      |..|.++|  .+..+.+.++.||-  .||
T Consensus         1 c~ecrkpigad~ke~h~knr~wh~--~cf   27 (27)
T d2cupa3           1 CVECRKPIGADSKEVHYKNRFWHD--TCF   27 (27)
T ss_dssp             CSSSCCBCCSSSCEEEETTEEEET--TTC
T ss_pred             CccccCCcCcchHHhhcccccccc--ccC
Confidence            34455555  24568999999997  887

>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.87  E-value=0.0033  Score=31.79  Aligned_cols=26  Identities=31%  Similarity=0.697  Sum_probs=22.4

Q ss_pred             ccccccccc-CCCceEEECCeeccccc
Q psy327           20 TCSVCNELL-VDLIYFYRGDKLYCGRH   45 (168)
Q Consensus        20 ~C~~C~~~L-~~~~~~~~~g~~yC~~c   45 (168)
                      +|+.|..+| .+..|-..+|.+||+.+
T Consensus         1 tC~tC~n~LVPGDRFHyvNG~lfCE~D   27 (33)
T d1rutx4           1 TCSTCRNRLVPGDRFHYINGSLFCEHD   27 (33)
T ss_dssp             BCTTTCCBCCTTCEEEEETTEEEEGGG
T ss_pred             CcccccccccCCceeEEecCEEEEecC
Confidence            588999888 56678899999999987

>d1ibia1 g.39.1.3 (A:117-144) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=95.80  E-value=0.0018  Score=31.81  Aligned_cols=24  Identities=21%  Similarity=0.297  Sum_probs=19.7

Q ss_pred             CCcccccCCCC-CCceeeCCceeeC
Q psy327           71 DLNINYFSSLP-AGQMSHEGQHWHA   94 (168)
Q Consensus        71 ~~C~~C~~~i~-~~~v~~~~~~~H~   94 (168)
                      +.|+.|++.++ ++.|.-.|+.||.
T Consensus         2 d~CpRC~~~VyaAEkviGaG~~WHk   26 (28)
T d1ibia1           2 EKCSRCGDSVYAAEKVIGAGKPWHK   26 (28)
T ss_dssp             EECTTTSSEESSSSCEESSSSEECS
T ss_pred             CcCcccchhHHHHHHHhcCCCcccc
Confidence            46889999887 4667788999997

>d1a7ia2 g.39.1.3 (A:36-67) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=95.78  E-value=0.00095  Score=33.80  Aligned_cols=29  Identities=17%  Similarity=0.495  Sum_probs=25.6

Q ss_pred             cCCCCccCCCCCceecCCeeeecccccCCC
Q psy327          101 CATCSLSLLGRPFLPRAGVIFCSIACSKGE  130 (168)
Q Consensus       101 C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~  130 (168)
                      |-.|.+.|++......++.+||+. ||.+.
T Consensus         2 C~~C~K~LdStTva~h~~eiYCKs-Cygkk   30 (32)
T d1a7ia2           2 CMVCRKNLDSTTVAIHDAEVYCKS-CYGKK   30 (32)
T ss_dssp             CSSSCCEECSSCCEEETTEEECSH-HHHHH
T ss_pred             chhhhhccCcceeeeecceEEehh-hcccc
Confidence            778999999999999999999996 88654

>d2cupa2 g.39.1.3 (A:35-65) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.003  Score=31.62  Aligned_cols=28  Identities=18%  Similarity=0.570  Sum_probs=24.9

Q ss_pred             cccccccccCCCceEEECCeeccccchH
Q psy327           20 TCSVCNELLVDLIYFYRGDKLYCGRHHA   47 (168)
Q Consensus        20 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~   47 (168)
                      +|+.|-.+|....|..+|++++|..|-.
T Consensus         1 RCaKC~hpLA~E~F~aKd~kI~C~Kc~s   28 (31)
T d2cupa2           1 RCAKCLHPLANETFVAKDNKILCNKCTT   28 (31)
T ss_dssp             CCSSSCCCTTSSCCEEETTEEECHHHHT
T ss_pred             CchhhccccccCcccccCCeEeeccccc
Confidence            5888999999999999999999998743

>d1x68a2 g.39.1.3 (A:37-70) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 5, FHL-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.009  Score=30.18  Aligned_cols=30  Identities=43%  Similarity=0.977  Sum_probs=26.0

Q ss_pred             ecCCCCccCCCCCceecCCeeeecccccCCC
Q psy327          100 CCATCSLSLLGRPFLPRAGVIFCSIACSKGE  130 (168)
Q Consensus       100 ~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~  130 (168)
                      .|..|+.+|.|+.|...+..++|++ |....
T Consensus         1 ncgkcsvslvg~gfltq~~~i~c~~-cgsg~   30 (34)
T d1x68a2           1 NCGKCSVSLVGKGFLTQNKEIFCQK-CGSGM   30 (34)
T ss_dssp             BCTTTCCBCSSSCEEEETTEEEETT-TTCCC
T ss_pred             CCccceEEEEeeeeeeccCcEEehh-cCCCc
Confidence            4889999999999999999999996 76543

>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0014  Score=32.79  Aligned_cols=31  Identities=19%  Similarity=0.637  Sum_probs=26.5

Q ss_pred             ecCCCCccCCCCCceecCCeeeecccccCCCC
Q psy327          100 CCATCSLSLLGRPFLPRAGVIFCSIACSKGEP  131 (168)
Q Consensus       100 ~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~~  131 (168)
                      .|+.|...|....|++.+...||-. |+...+
T Consensus         1 tcs~ckq~igsgsffpkg~d~ycvt-che~kf   31 (32)
T d1x63a2           1 TCSNCKQVIGTGSFFPKGEDFYCVT-CHETKF   31 (32)
T ss_dssp             CCSSSCCCCTTSCEEEETTEEEEHH-HHHHHT
T ss_pred             CcchhhhhcccccccCCCCcEEEEE-eecccc
Confidence            4899999999999999999999996 876443

>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.58  E-value=0.0044  Score=31.33  Aligned_cols=26  Identities=35%  Similarity=0.689  Sum_probs=23.2

Q ss_pred             ecCCCCccC-CCCCceecCCeeeeccc
Q psy327          100 CCATCSLSL-LGRPFLPRAGVIFCSIA  125 (168)
Q Consensus       100 ~C~~C~~~l-~~~~f~~~dg~~~C~~~  125 (168)
                      .|+.|...| .|..|...+|.+||..|
T Consensus         1 tC~tC~n~LVPGDRFHyvNG~lfCE~D   27 (33)
T d1rutx4           1 TCSTCRNRLVPGDRFHYINGSLFCEHD   27 (33)
T ss_dssp             BCTTTCCBCCTTCEEEEETTEEEEGGG
T ss_pred             CcccccccccCCceeEEecCEEEEecC
Confidence            489999999 78999999999999963

>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Leupaxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.00097  Score=35.34  Aligned_cols=13  Identities=38%  Similarity=1.183  Sum_probs=12.1

Q ss_pred             ccCCCCCCCCCCc
Q psy327            7 RAGPNSCWHPGCF   19 (168)
Q Consensus         7 ~~a~~~~~H~~Cf   19 (168)
                      +.|+|+.||++||
T Consensus        23 v~Al~~~wHpeCF   35 (35)
T d1x3ha1          23 LSAMDTVWHPECF   35 (35)
T ss_dssp             EEETTEEECTTTC
T ss_pred             eeecCCccCcccC
Confidence            6899999999998

>d1x62a1 g.39.1.3 (A:43-73) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 1 Elfin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.0016  Score=32.90  Aligned_cols=26  Identities=19%  Similarity=0.491  Sum_probs=22.9

Q ss_pred             ecCCCCccCCCCCceecCCeeeeccc
Q psy327          100 CCATCSLSLLGRPFLPRAGVIFCSIA  125 (168)
Q Consensus       100 ~C~~C~~~l~~~~f~~~dg~~~C~~~  125 (168)
                      .|+.|+..|...+++..++++||..+
T Consensus         1 vC~dCg~NLKqrG~Ffve~~lyCE~H   26 (31)
T d1x62a1           1 VCTDCGTNLKQKGHFFVEDQIYCEKH   26 (31)
T ss_dssp             SCSSSCCCHHHHCCEESSSCEECHHH
T ss_pred             CccccccChhhcceEEeccEEehhhh
Confidence            48999999988889999999999863

>d2d8xa1 g.39.1.3 (A:33-64) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.011  Score=29.69  Aligned_cols=30  Identities=23%  Similarity=0.638  Sum_probs=27.1

Q ss_pred             cccccccccCCCceEEECCeeccccchHhh
Q psy327           20 TCSVCNELLVDLIYFYRGDKLYCGRHHAET   49 (168)
Q Consensus        20 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~   49 (168)
                      +|..|...|.+..|....|..+|.+|..+.
T Consensus         1 rC~~C~~~LAD~GFvKnagR~LCrpch~re   30 (32)
T d2d8xa1           1 RCDLCQEVLADIGFVKNAGRHLCRPCHNRE   30 (32)
T ss_dssp             BCSSSCCBCSSSCCEEETTEEECHHHHHHH
T ss_pred             CchHHHhHHHHhhhhhcccccccchhhhhc
Confidence            588999999999999999999999998653

>d2cora1 g.39.1.3 (A:43-73) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.66  E-value=0.012  Score=29.39  Aligned_cols=29  Identities=24%  Similarity=0.390  Sum_probs=23.9

Q ss_pred             cccccccccCCCceEEECCeeccccchHhh
Q psy327           20 TCSVCNELLVDLIYFYRGDKLYCGRHHAET   49 (168)
Q Consensus        20 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~   49 (168)
                      .|+.|++.|... -.+..|.+||.+|+.+.
T Consensus         1 nC~~Cgkeltad-ArEl~geLyCLpChdKm   29 (31)
T d2cora1           1 NCANCGKELTAD-ARELKGELYCLPCHDKM   29 (31)
T ss_dssp             BCSSSCCBCCTT-CEEETTEEECHHHHHTT
T ss_pred             Cccccccccchh-HHHhcCCEEEEeccccc
Confidence            388999999664 37889999999998754

>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 3, abLIM-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.0022  Score=33.43  Aligned_cols=14  Identities=36%  Similarity=0.814  Sum_probs=12.8

Q ss_pred             eccCCCCCCCCCCc
Q psy327            6 SRAGPNSCWHPGCF   19 (168)
Q Consensus         6 ~~~a~~~~~H~~Cf   19 (168)
                      +++|+++.||.+||
T Consensus        23 aL~ALdkqWH~~CF   36 (36)
T d2dj7a2          23 SLLALDKQWHVSCF   36 (36)
T ss_dssp             CEEETTEEECTTTC
T ss_pred             eeeeeecceeeeeC
Confidence            57899999999998

>d1x61a1 g.39.1.3 (A:8-34) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.35  E-value=0.018  Score=27.34  Aligned_cols=24  Identities=13%  Similarity=0.225  Sum_probs=16.3

Q ss_pred             ccccCCCCC--CceeeCCceeeCCCCce
Q psy327           74 INYFSSLPA--GQMSHEGQHWHATDSCF   99 (168)
Q Consensus        74 ~~C~~~i~~--~~v~~~~~~~H~~~~CF   99 (168)
                      .+|+..+.+  -.+.++++.||.  .||
T Consensus         2 ggcgedvvgdgagvvaldrvfhv--gcf   27 (27)
T d1x61a1           2 GGCGEDVVGDGAGVVALDRVFHV--GCF   27 (27)
T ss_dssp             SSSCSCCCSSSCCEECSSSEECT--TTC
T ss_pred             CCcccccccCCcceEEEeeeEEe--ccC
Confidence            344444422  248899999999  887

>d1a7ia1 g.39.1.3 (A:8-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=94.33  E-value=0.02  Score=27.68  Aligned_cols=26  Identities=19%  Similarity=0.355  Sum_probs=20.6

Q ss_pred             CcccccCCCC-CCceeeCCceeeCCCCce
Q psy327           72 LNINYFSSLP-AGQMSHEGQHWHATDSCF   99 (168)
Q Consensus        72 ~C~~C~~~i~-~~~v~~~~~~~H~~~~CF   99 (168)
                      .|..|.+.++ ++.|.-.|+.||.  .||
T Consensus         2 kcg~c~ktvy~aeevqc~grsfhk--~cf   28 (28)
T d1a7ia1           2 KCGACGRTVYHAEEVQCDGRSFHR--CCF   28 (28)
T ss_dssp             BCSSSCCBCSSTTEEEETTEEEES--SSE
T ss_pred             ccccccceEeeeeeeeecCceecc--ccC
Confidence            4666777765 6779999999998  887

>d2cora1 g.39.1.3 (A:43-73) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.17  E-value=0.011  Score=29.40  Aligned_cols=29  Identities=24%  Similarity=0.529  Sum_probs=24.0

Q ss_pred             ecCCCCccCCCCCceecCCeeeecccccCCC
Q psy327          100 CCATCSLSLLGRPFLPRAGVIFCSIACSKGE  130 (168)
Q Consensus       100 ~C~~C~~~l~~~~f~~~dg~~~C~~~C~~~~  130 (168)
                      .|+.|++.|... --+.+|.+||.+ |+.++
T Consensus         1 nC~~Cgkeltad-ArEl~geLyCLp-ChdKm   29 (31)
T d2cora1           1 NCANCGKELTAD-ARELKGELYCLP-CHDKM   29 (31)
T ss_dssp             BCSSSCCBCCTT-CEEETTEEECHH-HHHTT
T ss_pred             Cccccccccchh-HHHhcCCEEEEe-ccccc
Confidence            488999999754 567899999997 98876

>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 5, Enigma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.08  E-value=0.0032  Score=34.89  Aligned_cols=13  Identities=31%  Similarity=0.710  Sum_probs=12.1

Q ss_pred             ccCCCCCCCCCCc
Q psy327            7 RAGPNSCWHPGCF   19 (168)
Q Consensus         7 ~~a~~~~~H~~Cf   19 (168)
                      +.|||+.||++||
T Consensus        33 vtAlgk~WHPEhF   45 (45)
T d2dara2          33 LVALGKSWHPEEF   45 (45)
T ss_dssp             EEETTEEECTTTC
T ss_pred             eeecCCccCcCCC
Confidence            5899999999998

>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.08  E-value=0.0032  Score=33.00  Aligned_cols=13  Identities=38%  Similarity=1.002  Sum_probs=11.9

Q ss_pred             ccCCCCCCCCCCc
Q psy327            7 RAGPNSCWHPGCF   19 (168)
Q Consensus         7 ~~a~~~~~H~~Cf   19 (168)
                      +.|+|+.|||.||
T Consensus        23 LrA~Gk~yHP~CF   35 (35)
T d2dloa1          23 LRAMGKAYHPGCF   35 (35)
T ss_dssp             EEETTEEECTTTC
T ss_pred             HHHhCCCCCCCCC
Confidence            5799999999998

>d1x4la2 g.39.1.3 (A:37-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.018  Score=28.18  Aligned_cols=28  Identities=50%  Similarity=0.977  Sum_probs=24.2

Q ss_pred             ecCCCCccCCCCCceecCCeeeecccccC
Q psy327          100 CCATCSLSLLGRPFLPRAGVIFCSIACSK  128 (168)
Q Consensus       100 ~C~~C~~~l~~~~f~~~dg~~~C~~~C~~  128 (168)
                      .|..|...|.|+.|....+.++|.+ |.+
T Consensus         1 nc~kcsvslvgrgflterddilc~d-cgk   28 (30)
T d1x4la2           1 NCKKCSLSLVGRGFLTERDDILCPD-CGK   28 (30)
T ss_dssp             BCSSSCCBCTTSCCEECSSSEECHH-HHH
T ss_pred             CcceeeEEEEeeeccccccceeccc-cCc
Confidence            3778999999999999999999994 864

>d1x6aa2 g.39.1.3 (A:42-75) Lim domain kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Lim domain kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.45  E-value=0.021  Score=29.23  Aligned_cols=30  Identities=20%  Similarity=0.762  Sum_probs=24.6

Q ss_pred             eecCCCCccC-CCCCcee-cCCeeeecccccCC
Q psy327           99 FCCATCSLSL-LGRPFLP-RAGVIFCSIACSKG  129 (168)
Q Consensus        99 F~C~~C~~~l-~~~~f~~-~dg~~~C~~~C~~~  129 (168)
                      |.|..|+..| +|+.|.+ ...++||.. |+.+
T Consensus         1 F~C~~C~~fIgdgdsyaLVerskLYCG~-Cy~~   32 (34)
T d1x6aa2           1 FACMSCKVIIEDGDAYALVQHATLYCGK-CHNE   32 (34)
T ss_dssp             CBCTTTCCBCCTTSCEEECSSSCEEEHH-HHHH
T ss_pred             CcccccccEEecCceEEEEeeceeeeec-chhc
Confidence            7899999999 7888875 478999995 8753

>d1b8ta1 g.39.1.3 (A:1-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.90  E-value=0.027  Score=28.65  Aligned_cols=26  Identities=27%  Similarity=0.387  Sum_probs=19.8

Q ss_pred             CcccccCCCC-CCceeeCCceeeCCCCce
Q psy327           72 LNINYFSSLP-AGQMSHEGQHWHATDSCF   99 (168)
Q Consensus        72 ~C~~C~~~i~-~~~v~~~~~~~H~~~~CF   99 (168)
                      .|..|.+.++ ++.|.-.|+.||.  .||
T Consensus         9 kcg~c~ktvy~aeevqc~g~sfhk--~cf   35 (35)
T d1b8ta1           9 KCGVCQKAVYFAEEVQCEGSSFHK--SCF   35 (35)
T ss_dssp             ECTTTCCEECSSCCEEETTEEECT--TTC
T ss_pred             eeccccceEeeeeeeeecCccccc--ccC
Confidence            3556666654 5679999999998  887

>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Nedd9 interacting protein with calponin homology, NICAL (MICAL1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.18  E-value=0.013  Score=30.88  Aligned_cols=17  Identities=24%  Similarity=0.516  Sum_probs=14.1

Q ss_pred             eeeeccCCCCCCCCCCc
Q psy327            3 VFASRAGPNSCWHPGCF   19 (168)
Q Consensus         3 ~~~~~~a~~~~~H~~Cf   19 (168)
                      .+..+.|.|+.||..||
T Consensus        20 ~~Erl~a~g~~yHk~CF   36 (36)
T d2co8a2          20 VLERLCVNGHFFHRSCF   36 (36)
T ss_dssp             TTTBCCBTTBCCBTTTC
T ss_pred             eeeEEEecCcEeccccC
Confidence            34457899999999998

>d1x6aa2 g.39.1.3 (A:42-75) Lim domain kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Lim domain kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.16  E-value=0.045  Score=27.94  Aligned_cols=31  Identities=35%  Similarity=0.824  Sum_probs=24.2

Q ss_pred             ccccccccccCC-CceEE-ECCeeccccchHhh
Q psy327           19 FTCSVCNELLVD-LIYFY-RGDKLYCGRHHAET   49 (168)
Q Consensus        19 f~C~~C~~~L~~-~~~~~-~~g~~yC~~cy~~~   49 (168)
                      |.|..|+.-+.+ ..|.. .-.++||-.||.+.
T Consensus         1 F~C~~C~~fIgdgdsyaLVerskLYCG~Cy~~~   33 (34)
T d1x6aa2           1 FACMSCKVIIEDGDAYALVQHATLYCGKCHNEV   33 (34)
T ss_dssp             CBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHH
T ss_pred             CcccccccEEecCceEEEEeeceeeeecchhcc
Confidence            789999999955 45654 56689999999864

>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Eplin, LIMA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.97  E-value=0.01  Score=31.20  Aligned_cols=17  Identities=18%  Similarity=0.444  Sum_probs=14.1

Q ss_pred             eeeeccCCCCCCCCCCc
Q psy327            3 VFASRAGPNSCWHPGCF   19 (168)
Q Consensus         3 ~~~~~~a~~~~~H~~Cf   19 (168)
                      ....+.|.|+.||..||
T Consensus        19 ~~E~~~a~g~~~Hk~CF   35 (35)
T d2d8ya1          19 PMERLLANQQVFHISCF   35 (35)
T ss_dssp             TTSEEECSSSEEETTTC
T ss_pred             eeeeEecCCeehhhccC
Confidence            34557899999999998

>d2d8xa1 g.39.1.3 (A:33-64) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.80  E-value=0.051  Score=27.21  Aligned_cols=28  Identities=29%  Similarity=0.603  Sum_probs=25.1

Q ss_pred             ecCCCCccCCCCCceecCCeeeecccccC
Q psy327          100 CCATCSLSLLGRPFLPRAGVIFCSIACSK  128 (168)
Q Consensus       100 ~C~~C~~~l~~~~f~~~dg~~~C~~~C~~  128 (168)
                      +|..|...|.+.+|+...|+.+|.+ |..
T Consensus         1 rC~~C~~~LAD~GFvKnagR~LCrp-ch~   28 (32)
T d2d8xa1           1 RCDLCQEVLADIGFVKNAGRHLCRP-CHN   28 (32)
T ss_dssp             BCSSSCCBCSSSCCEEETTEEECHH-HHH
T ss_pred             CchHHHhHHHHhhhhhcccccccch-hhh
Confidence            5889999999999999999999996 764

>d2cora2 g.39.1.3 (A:8-42) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.89  E-value=0.055  Score=27.82  Aligned_cols=26  Identities=8%  Similarity=0.238  Sum_probs=20.3

Q ss_pred             CcccccCCCCCCceeeCCceeeCCCCce
Q psy327           72 LNINYFSSLPAGQMSHEGQHWHATDSCF   99 (168)
Q Consensus        72 ~C~~C~~~i~~~~v~~~~~~~H~~~~CF   99 (168)
                      .|..|..-|+++-+.+.+..||+  ..|
T Consensus        10 vC~KCh~iIdd~pL~Fr~d~YHp--~HF   35 (35)
T d2cora2          10 ICQKCHAIIDEQPLIFKNDPYHP--DHF   35 (35)
T ss_dssp             BCTTTCCBCCSCCCCCSSSCCCT--TTS
T ss_pred             HHHHHHhhhhcCcceecCCCCCC--CCC
Confidence            56666666667779999999999  666

>d1x68a2 g.39.1.3 (A:37-70) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 5, FHL-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.59  E-value=0.14  Score=25.63  Aligned_cols=26  Identities=19%  Similarity=0.599  Sum_probs=23.0

Q ss_pred             ccccccccCCCceEEECCeeccccch
Q psy327           21 CSVCNELLVDLIYFYRGDKLYCGRHH   46 (168)
Q Consensus        21 C~~C~~~L~~~~~~~~~g~~yC~~cy   46 (168)
                      |..|+..|.++.|...+..++|.+|-
T Consensus         2 cgkcsvslvg~gfltq~~~i~c~~cg   27 (34)
T d1x68a2           2 CGKCSVSLVGKGFLTQNKEIFCQKCG   27 (34)
T ss_dssp             CTTTCCBCSSSCEEEETTEEEETTTT
T ss_pred             CccceEEEEeeeeeeccCcEEehhcC
Confidence            67889999999999999999999883

>d1rutx2 g.39.1.3 (X:49-82) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.35  E-value=0.045  Score=27.93  Aligned_cols=27  Identities=26%  Similarity=0.723  Sum_probs=23.3

Q ss_pred             ecCCCCccC--CCCCceecCCeeeecccc
Q psy327          100 CCATCSLSL--LGRPFLPRAGVIFCSIAC  126 (168)
Q Consensus       100 ~C~~C~~~l--~~~~f~~~dg~~~C~~~C  126 (168)
                      +|+.|+..|  .|...+.+.|.++|+.|+
T Consensus         1 KCscC~~~LgeiG~s~ytk~~mILCk~DY   29 (34)
T d1rutx2           1 KCSSCQAQLGDIGTSSYTKSGMILCRNDY   29 (34)
T ss_dssp             BCTTTCCBHHHHCSEEEEETTEEECHHHH
T ss_pred             CCcchhcChhhccchheecCCEEEEchhH
Confidence            588899999  578889999999999864

>d1v6ga2 g.39.1.3 (A:42-81) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 2, abLIM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.38  E-value=0.26  Score=25.75  Aligned_cols=29  Identities=31%  Similarity=0.646  Sum_probs=25.1

Q ss_pred             eecCCCCccC-CCCCceecCCeeeecccccC
Q psy327           99 FCCATCSLSL-LGRPFLPRAGVIFCSIACSK  128 (168)
Q Consensus        99 F~C~~C~~~l-~~~~f~~~dg~~~C~~~C~~  128 (168)
                      |.|+.|..++ .|+.....+..-.|.. |..
T Consensus         1 FvC~vCr~pFP~GDRVTFnGKeC~CQ~-Cs~   30 (40)
T d1v6ga2           1 FVCAVCRLPFPPGDRVTFNGKECMCQK-CSL   30 (40)
T ss_dssp             SSCSSSCCCCCSSSCEEEETTEEEEHH-HHS
T ss_pred             CcccccCCCCCCCCeEEEcCceeehhh-cCC
Confidence            7899999999 7888888888999996 875

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.75  E-value=0.14  Score=32.23  Aligned_cols=45  Identities=16%  Similarity=0.501  Sum_probs=34.6

Q ss_pred             CccccccccccCCCceEEECCeeccccchHhhhccccccCccccc
Q psy327           18 CFTCSVCNELLVDLIYFYRGDKLYCGRHHAETLKPRCSACDEVRV   62 (168)
Q Consensus        18 Cf~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~   62 (168)
                      =|+|.+|...+........=|..||..|..+.+..+|..|..++.
T Consensus        22 ~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~   66 (97)
T d1jm7b_          22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAW   66 (97)
T ss_dssp             TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred             cCCCccCCchhhcCceeCCCCCchhHHHHHHHHhccccccCCcCc
Confidence            368999999886543333569999999988877778888887765

>d1j2oa2 g.39.1.3 (A:31-63) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Rhombotin-2 (Lmo2)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.67  E-value=0.14  Score=25.55  Aligned_cols=31  Identities=19%  Similarity=0.495  Sum_probs=23.8

Q ss_pred             ccccccccccCC--CceEEECCeeccccchHhh
Q psy327           19 FTCSVCNELLVD--LIYFYRGDKLYCGRHHAET   49 (168)
Q Consensus        19 f~C~~C~~~L~~--~~~~~~~g~~yC~~cy~~~   49 (168)
                      ++|.-|+-.|.+  ...|.+.+.++|+.+|.++
T Consensus         1 LkC~cC~cRLGEVG~tlytk~nliLCkrDYlRl   33 (33)
T d1j2oa2           1 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRL   33 (33)
T ss_dssp             CCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHH
T ss_pred             CccccccccccchhhHHHhhcceeeehhhhhcC
Confidence            467778888844  4568899999999999753

>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.39  E-value=0.25  Score=25.87  Aligned_cols=23  Identities=9%  Similarity=0.156  Sum_probs=20.5

Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCc
Q psy327          126 CSKGEPPTPSDSSGPGLRPQRPR  148 (168)
Q Consensus       126 C~~~~~~~~~~~~~~~~~~~~~~  148 (168)
                      ||.+.++++|.+|+.+|+|....
T Consensus         2 Cy~~~~a~~C~~C~k~I~~G~k~   24 (37)
T d1x63a1           2 CTTREDSPKCKGCFKAIVAGDQN   24 (37)
T ss_dssp             CCSCCCSCBCSSSCCBCCSSSCE
T ss_pred             ccccccCcccccCCCccCCCCeE
Confidence            88999999999999999987554

>d1v6ga2 g.39.1.3 (A:42-81) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 2, abLIM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.36  E-value=0.4  Score=25.01  Aligned_cols=28  Identities=21%  Similarity=0.515  Sum_probs=19.8

Q ss_pred             ccccccccccCC-CceEEECCeeccccch
Q psy327           19 FTCSVCNELLVD-LIYFYRGDKLYCGRHH   46 (168)
Q Consensus        19 f~C~~C~~~L~~-~~~~~~~g~~yC~~cy   46 (168)
                      |+|+.|++++.. +.....+...+|..|-
T Consensus         1 FvC~vCr~pFP~GDRVTFnGKeC~CQ~Cs   29 (40)
T d1v6ga2           1 FVCAVCRLPFPPGDRVTFNGKECMCQKCS   29 (40)
T ss_dssp             SSCSSSCCCCCSSSCEEEETTEEEEHHHH
T ss_pred             CcccccCCCCCCCCeEEEcCceeehhhcC
Confidence            789999999944 3445566677776663