Psyllid ID: psy3306

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-----
MRQLHKWNLRGHLPNFLFKYMDERSFKIRLNNSTLSQDFSNVCGIPQGGVASSTLFAIAINTITSYIHPSLSSSLFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSPQKTQCVLFSRKYKQNNIAVNLTMYDSRIEVVDQFRFLGLTFDKKMNWKIHLRNLKQSCVARSRILKILSKKSWASDRKMLIRMYKSLIRSKLDYGCPAYNSASANTLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDIRRKMLTCNYITKVLSIENHPNAMRILNPLYKPKYENSNIKPTVGIQKKNLEDTIPFNSIMLKALPKEPWLLKSPKYDLSLSTYKKESMPAQFFQNEFKNKIEENFKDHVKIFTDGSKNDLGVGCALTIPERNISKRFALNKNASIFHAELLALLQSLITIKELGVNKALIITDSLMYPWKSSCQKSRLDEVCLMRMRLGHSKITHSHLFRREDRPMCQQCQVPMTIEHILIACRNMRFRPPSFSSTSISDILKNDEGTLKEVLQFLKRNNFLKNL
cHHHHHcccccHHHHHHHHHHccccEEEEEccEEEccccccccccccccccHHHHHHHHHHcHHccccccccEEEEEEccEEEEEcccHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccccccccEEEEccEEEEccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEccccccccEEEEEEEEcccEEEEEEccccccHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccccEEEEEEEccccccccHHccccccccccccccccccccHHccccccccccccccccccHHHHccccccHHHHHHHHHHHccccccc
cHHHHHccccHHHHHHHHHHHcccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEccHHEHcccccHHHHHHHHHHHHHHHHHHHHHccccEccccEEEEEEEccccccccccEEEEccEEcccccHHHEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEccccccccEEEEEEEcccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHcccccccccEEEEEEEEcccccccccHHHHHHHHHHHHcccccccHHHHHHHcccHHHHHHHccHHHHHHHccccccccHHHHHHHHHcccHccc
mrqlhkwnlrghlpnfLFKYMDERSFkirlnnstlsqdfsnvcgipqggvassTLFAIAINTITsyihpslssslfvddfaiftrdknKDLLISTMQESIDKLnhfsdqtglyfspqktqcVLFSRKYKQNNIAVNLTMYDSRIEVVDQFRFLGltfdkkmnWKIHLRNLKQSCVARSRILKILSKKSWASDRKMLIRMYKSLIRSkldygcpaynsasantLQILNPVQNLCLRLatgafrsspvvsleaetgepnldIRRKMLTCNYITKVLsienhpnamrilnplykpkyensnikptvgiqkknledtipfnsimlkalpkepwllkspkydlslstykkesmpaqffQNEFKNKIEENFKDHVKIFtdgskndlgvgcaltiperniskrfalnknASIFHAELLALLQSLITIKELGVNKALIITdslmypwksscqksrlDEVCLMRMRlghskithshlfrredrpmcqqcqvpmTIEHILIACrnmrfrppsfsstsisdilkndeGTLKEVLQFLKRNNFLKNL
mrqlhkwnlrghlpnFLFKYMDERSFKIRLNNSTLSQDFSNVCGIPQGGVASSTLFAIAINTITSYIHPSLSSSLFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSPQKTQCVLFSRKYKQNNIAVNLTMYDSRIEVVDQFRFLGLTFDKKMNWKIHLRNLKQSCVARSRILkilskkswasdrKMLIRMYKSLIRSKLDYGCPAYNSASANTLQILNPVQNLCLRLATGafrsspvvsleaetgepnldirRKMLTCNYITKVlsienhpnaMRILNPLYKPKYENSNIKPTVGIQKKNLEDTIPFNSIMLKALPKEPWLLKSPKYDLSLSTYKKESMPAQFFQNEFKNKIEENFKDHVKIFtdgskndlGVGCALTIPERNISKRFALNKNASIFHAELLALLQSLITIKELGVNKALIITDslmypwksscqkSRLDEVCLMRMRLGHSkithshlfrredrpmCQQCQVPMTIEHILIACRNMRFRPPSFSSTSISDILKNDEGTLKEVLqflkrnnflknl
MRQLHKWNLRGHLPNFLFKYMDERSFKIRLNNSTLSQDFSNVCGIPQGGVASSTLFAIAINTITSYIHPSLSSSLFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSPQKTQCVLFSRKYKQNNIAVNLTMYDSRIEVVDQFRFLGLTFDKKMNWKIHLRNLKQSCVARSRILKILSKKSWASDRKMLIRMYKSLIRSKLDYGCPAYNSASANTLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDIRRKMLTCNYITKVLSIENHPNAMRILNPLYKPKYENSNIKPTVGIQKKNLEDTIPFNSIMLKALPKEPWLLKSPKYDLSLSTYKKESMPAQFFQNEFKNKIEENFKDHVKIFTDGSKNDLGVGCALTIPERNISKRFALNKNASIFHAELLALLQSLITIKELGVNKALIITDSLMYPWKSSCQKSRLDEVCLMRMRLGHSKITHSHLFRREDRPMCQQCQVPMTIEHILIACRNMRFRPPSFSSTSISDILKNDEGTLKEVLQFLKRNNFLKNL
****HKWNLRGHLPNFLFKYMDERSFKIRLNNSTLSQDFSNVCGIPQGGVASSTLFAIAINTITSYIHPSLSSSLFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSPQKTQCVLFSRKYKQNNIAVNLTMYDSRIEVVDQFRFLGLTFDKKMNWKIHLRNLKQSCVARSRILKILSKKSWASDRKMLIRMYKSLIRSKLDYGCPAYNSASANTLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDIRRKMLTCNYITKVLSIENHPNAMRILNPLYKPKYENSNIKPTVGIQKKNLEDTIPFNSIMLKALPKEPWLLKSPKYDLSLSTYK****PAQFFQNEFKNKIEENFKDHVKIFTDGSKNDLGVGCALTIPERNISKRFALNKNASIFHAELLALLQSLITIKELGVNKALIITDSLMYPWKSSCQKSRLDEVCLMRMRLGHSKITHSHLFRREDRPMCQQCQVPMTIEHILIACRNMRFRP**********IL****GTLKEVLQFLK********
MRQLHKWNLRGHLPNFLFKYMDERSFKIRLNNSTLSQDFSNVCGIPQGGVASSTLFAIAINTITSYIHPSLSSSLFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSPQKTQCVLFSRKYKQNNIAVNLTMYDSRIEVVDQFRFLGLTFDKKMNWKIHLRNLKQSCVARSRILKILSKKSWASDRKMLIRMYKSLIRSKLDYGCPAYNSASANTLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDIRRKMLTCNYITKVLSIENHPNAMRIL****************VGIQKKNLEDTIPFNSIMLKALPKEPWLLKSPKYDLSLSTY****MPAQFFQNEFKNKIEENFKDHVKIFTDGSKNDLGVGCALTIPERNISKRFALNKNASIFHAELLALLQSLITIKELGVNKALIITDSLM***************CLMRMRLGHSKITHSHLFRREDRPMCQQCQVPMTIEHILIACRNMRFRPPSFSSTSISDILKNDEGTLKEVLQFLKRNNFLK**
MRQLHKWNLRGHLPNFLFKYMDERSFKIRLNNSTLSQDFSNVCGIPQGGVASSTLFAIAINTITSYIHPSLSSSLFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSPQKTQCVLFSRKYKQNNIAVNLTMYDSRIEVVDQFRFLGLTFDKKMNWKIHLRNLKQSCVARSRILKILSKKSWASDRKMLIRMYKSLIRSKLDYGCPAYNSASANTLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDIRRKMLTCNYITKVLSIENHPNAMRILNPLYKPKYENSNIKPTVGIQKKNLEDTIPFNSIMLKALPKEPWLLKSPKYDLSLSTYKKESMPAQFFQNEFKNKIEENFKDHVKIFTDGSKNDLGVGCALTIPERNISKRFALNKNASIFHAELLALLQSLITIKELGVNKALIITDSLMYPWKSSCQKSRLDEVCLMRMRLGHSKITHSHLFRREDRPMCQQCQVPMTIEHILIACRNMRFRPPSFSSTSISDILKNDEGTLKEVLQFLKRNNFLKNL
MRQLHKWNLRGHLPNFLFKYMDERSFKIRLNNSTLSQDFSNVCGIPQGGVASSTLFAIAINTITSYIHPSLSSSLFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSPQKTQCVLFSRKYKQNNIAVNLTMYDSRIEVVDQFRFLGLTFDKKMNWKIHLRNLKQSCVARSRILKILSKKSWASDRKMLIRMYKSLIRSKLDYGCPAYNSASANTLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDIRRKMLTCNYITKVLSIENHPNAMRILNPLYKPKYENSNIKPTVGIQKKNLEDTIPFNSIMLKALPKEPWLLKSPKYDLSLSTYKKESMPAQFFQNEFKNKIEENFKDHVKIFTDGSKNDLGVGCALTIPERNISKRFALNKNASIFHAELLALLQSLITIKELGVNKALIITDSLMYPWKSSCQKSRLDEVCLMRMRLGHSKITHSHLFRREDRPMCQQCQVPMTIEHILIACRNMRFRPPSFSSTSISDILKNDEGTLKEVLQFLKRNNFLKNL
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MRQLHKWNLRGHLPNFLFKYMDERSFKIRLNNSTLSQDFSNVCGIPQGGVASSTLFAIAINTITSYIHPSLSSSLFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSPQKTQCVLFSRKYKQNNIAVNLTMYDSRIEVVDQFRFLGLTFDKKMNWKIHLRNLKQSCVARSRILKILSKKSWASDRKMLIRMYKSLIRSKLDYGCPAYNSASANTLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDIRRKMLTCNYITKVLSIENHPNAMRILNPLYKPKYENSNIKPTVGIQKKNLEDTIPFNSIMLKALPKEPWLLKSPKYDLSLSTYKKESMPAQFFQNEFKNKIEENFKDHVKIFTDGSKNDLGVGCALTIPERNISKRFALNKNASIFHAELLALLQSLITIKELGVNKALIITDSLMYPWKSSCQKSRLDEVCLMRMRLGHSKITHSHLFRREDRPMCQQCQVPMTIEHILIACRNMRFRPPSFSSTSISDILKNDEGTLKEVLQFLKRNNFLKNL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query535 2.2.26 [Sep-21-2011]
Q03270410 Retrovirus-related Pol po yes N/A 0.370 0.482 0.233 4e-11
P21328916 RNA-directed DNA polymera yes N/A 0.469 0.274 0.213 7e-11
P21329916 RNA-directed DNA polymera N/A N/A 0.472 0.276 0.204 4e-09
P164251021 Putative 115 kDa protein yes N/A 0.457 0.239 0.206 2e-08
Q03271383 Retrovirus-related Pol po yes N/A 0.261 0.365 0.230 4e-07
Q9NBX4908 Probable RNA-directed DNA yes N/A 0.388 0.229 0.199 3e-06
Q95SX7906 Probable RNA-directed DNA yes N/A 0.413 0.243 0.225 2e-05
Q032771004 Retrovirus-related Pol po N/A N/A 0.428 0.228 0.204 2e-05
Q03269337 Retrovirus-related Pol po no N/A 0.360 0.572 0.190 0.0002
>sp|Q03270|PO12_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable element R1 2 (Fragment) OS=Nasonia vitripennis PE=4 SV=1 Back     alignment and function desciption
 Score = 70.1 bits (170), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 97/214 (45%), Gaps = 16/214 (7%)

Query: 44  GIPQGGVASSTLFAIAINTITSYIHPS-LSSSLFVDDFAIFTRDKNKDLLISTMQESIDK 102
           G PQG +    L+ +++N +   +  S +S   F DD AI      +  +   + E ++ 
Sbjct: 1   GCPQGSIGGPILWNLSMNGMLIELAGSGVSVCAFADDVAILAEGNTRKEVERVINEKMEI 60

Query: 103 LNHFSDQTGLYFSPQKTQCVLFSRKYKQNNIAVNLT----MYDSRIEVVDQFRFLGLTFD 158
           +  + ++ G+  S +KT C+L   KY  +N AV ++    +Y  RI+ V  FR+LG+   
Sbjct: 61  VYKWGEKMGVSVSEEKTVCMLLKGKYVTSNRAVRVSKTINVY-KRIKYVSCFRYLGVNVT 119

Query: 159 KKMNWKIHLRNLKQSCVARSRILKILSKKSWASDRKMLIRMYKSLIRSKLDYGCPAY--- 215
           + M +  H+R +K       + LK + ++ W   R     + +     ++ Y   A+   
Sbjct: 120 EGMGFGEHVRGMKVKVAKGVQKLKRVLRRDWGLRRAASHLVLRGTFLPQVSYCASAWYEV 179

Query: 216 -------NSASANTLQILNPVQNLCLRLATGAFR 242
                  N+ SA    ++    N+C  ++T A +
Sbjct: 180 LKYEYGRNALSAAVRYVMYACLNVCRTVSTEAMQ 213

Nasonia vitripennis (taxid: 7425)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 4EC: 9
>sp|P21328|RTJK_DROME RNA-directed DNA polymerase from mobile element jockey OS=Drosophila melanogaster GN=pol PE=1 SV=1 Back     alignment and function description
>sp|P21329|RTJK_DROFU RNA-directed DNA polymerase from mobile element jockey OS=Drosophila funebris GN=jockey\pol PE=1 SV=1 Back     alignment and function description
>sp|P16425|Y2R2_DROME Putative 115 kDa protein in type-1 retrotransposable element R1DM OS=Drosophila melanogaster PE=4 SV=1 Back     alignment and function description
>sp|Q03271|PO13_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable element R1 3 (Fragment) OS=Nasonia vitripennis PE=4 SV=1 Back     alignment and function description
>sp|Q9NBX4|RTXE_DROME Probable RNA-directed DNA polymerase from transposon X-element OS=Drosophila melanogaster GN=X-element\ORF2 PE=3 SV=1 Back     alignment and function description
>sp|Q95SX7|RTBS_DROME Probable RNA-directed DNA polymerase from transposon BS OS=Drosophila melanogaster GN=RTase PE=2 SV=1 Back     alignment and function description
>sp|Q03277|PO11_SCICO Retrovirus-related Pol polyprotein from type-1 retrotransposable element R1 (Fragment) OS=Sciara coprophila PE=4 SV=1 Back     alignment and function description
>sp|Q03269|PO11_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable element R1 (Fragment) OS=Nasonia vitripennis PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query535
125901787 1222 pol-like protein [Biomphalaria glabrata] 0.798 0.349 0.379 3e-70
427798887 1199 Putative tick transposon, partial [Rhipi 0.798 0.356 0.344 1e-60
427798889 1199 Putative tick transposon, partial [Rhipi 0.798 0.356 0.340 1e-59
427791807 1212 Putative tick transposon, partial [Rhipi 0.783 0.345 0.354 2e-59
427792011 1121 Putative tick transposon, partial [Rhipi 0.8 0.381 0.337 8e-59
427798885 1199 Putative tick transposon, partial [Rhipi 0.798 0.356 0.337 9e-58
427791321 1210 Putative tick transposon, partial [Rhipi 0.786 0.347 0.331 8e-57
427791063 1035 Putative tick transposon, partial [Rhipi 0.798 0.412 0.317 1e-55
427778603 1397 Putative tick transposon [Rhipicephalus 0.807 0.309 0.311 1e-54
427791981 1060 Putative tick transposon, partial [Rhipi 0.8 0.403 0.331 1e-54
>gi|125901787|gb|ABN58714.1| pol-like protein [Biomphalaria glabrata] Back     alignment and taxonomy information
 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 167/440 (37%), Positives = 247/440 (56%), Gaps = 13/440 (2%)

Query: 1    MRQLHKWNLRGHLPNFLFKYMDERSFKIRLNNSTLSQDFSNVCGIPQGGVASSTLFAIAI 60
            +R L    L+GHLP F+ +++ +R F++R+ NS  S       G+PQG + S TLF I I
Sbjct: 588  LRDLALMGLKGHLPRFVEEFLKDRKFQVRVGNSA-SDTHDQEMGVPQGSILSVTLFNIKI 646

Query: 61   NTITSYIHPSLSSSLFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSPQKTQ 120
            N+I + + P +  SL+VDDF I T  KN + L   +Q  ++K+  +++  G  FS  KT 
Sbjct: 647  NSIINALSPGIECSLYVDDFVILTYGKNMNTLERKLQLCLNKIQGWANYNGFKFSDSKTV 706

Query: 121  CVLFSRKYKQNNIAVNLTMYDSRIEVVDQFRFLGLTFDKKMNWKIHLRNLKQSCVARSRI 180
             + F    +  +    L ++  +I VV   +FLGLT D K N+  H++ LK+ C     I
Sbjct: 707  SMHFC-NLRGLHPDPELFIHKKKIPVVKTTKFLGLTLDSKFNFLPHIKELKKKCQKSLNI 765

Query: 181  LKILSKKSWASDRKMLIRMYKSLIRSKLDYGCPAYNSASANTLQILNPVQNLCLRLATGA 240
            L++LS   W +DR  L+ +Y+SLIRSKLDYG   Y +A  + L+IL P+QN  LRL  GA
Sbjct: 766  LRVLSHTDWGADRDTLLLLYRSLIRSKLDYGSIIYGAARKSYLKILEPIQNAALRLCLGA 825

Query: 241  FRSSPVVSLEAETGEPNLDIRRKMLTCNYITKVLSIENHPNAMRILNPLYKPKY-ENSNI 299
            FR+SP+ SL  E GE  +DIR K L   YI K+ S   +P    I NP     Y    N+
Sbjct: 826  FRTSPIPSLHVEAGELPMDIRMKKLAMQYIVKLKSNPTNPAFDSIFNPTEVELYNRRPNV 885

Query: 300  KPTVGIQKK----NLEDTIPFNSIMLKALPKE-PWLLKSPKYDLSLSTYKKESMPAQFFQ 354
               +G++ +    NL  T P + I     P+  PWL+  PK +LSL  +KKE+      Q
Sbjct: 886  IQPLGLRMREPIQNL--TQPIDQISKIETPQNPPWLMNKPKLNLSLLNFKKENTDPSILQ 943

Query: 355  NEFKNKIEENFKDHVKIFTDGSKNDLGVGCALTIPERNISKRFALNKNASIFHAELLALL 414
              F+ +++E++ D   I+TDGSK +  V CA +   + IS+R  L    SIF AEL A+L
Sbjct: 944  VHFR-ELQESYGDCGTIYTDGSKMEGKVACACSFRNKTISRR--LPDGCSIFTAELHAIL 1000

Query: 415  QSLITIKELGVNKALIITDS 434
             +L+ +K    +K +I +DS
Sbjct: 1001 LALMAVKASERSKFIICSDS 1020

Source: Biomphalaria glabrata

Species: Biomphalaria glabrata

Genus: Biomphalaria

Family: Planorbidae

Order:

Class: Gastropoda

Phylum: Mollusca

Superkingdom: Eukaryota
>gi|427798887|gb|JAA64895.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427798889|gb|JAA64896.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427791807|gb|JAA61355.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427792011|gb|JAA61457.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427798885|gb|JAA64894.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427791321|gb|JAA61112.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427791063|gb|JAA60983.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427778603|gb|JAA54753.1| Putative tick transposon [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427791981|gb|JAA61442.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query535
FB|FBgn0045761888 CHKov1 "CHKov1" [Drosophila me 0.403 0.243 0.261 6.5e-10
ASPGD|ASPL0000033911686 AN2796 [Emericella nidulans (t 0.504 0.393 0.228 2.9e-05
ASPGD|ASPL0000077547 1581 AN8648 [Emericella nidulans (t 0.502 0.170 0.237 4.9e-05
ASPGD|ASPL00000556521054 AN0368 [Emericella nidulans (t 0.454 0.230 0.249 5.5e-05
ASPGD|ASPL00000402261538 AN2661 [Emericella nidulans (t 0.456 0.158 0.238 0.00041
FB|FBgn0045761 CHKov1 "CHKov1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 179 (68.1 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
 Identities = 59/226 (26%), Positives = 108/226 (47%)

Query:    17 LFKYMDERSFKIRLNNSTLSQDFSNVCGIPQGGVASSTLFAIAINTITSYIHPSLSSSLF 76
             L  Y+    F IR + ST S+D +   G+PQG V    L+ +   T    I  +L++S F
Sbjct:   609 LKSYLYNTVFAIRCDTST-SRDCAIEAGVPQGSVLGPILYTLY--TADFPIDYNLTTSTF 665

Query:    77 VDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSPQKTQCVLFSRKYKQNNIAVN 136
              DD AI +R K      + +   +  +  +     +  + QK + V F+   KQ      
Sbjct:   666 ADDTAILSRSKCPIKATALLSRHLTSVERWLADWRISINVQKCKQVTFTLN-KQT--CPP 722

Query:   137 LTMYDSRIEVVDQFRFLGLTFDKKMNWKIHLRNLKQSCVARSRILK-ILSKKSWAS-DRK 194
             L + +  I   D+  +LG+  D+++ W+ H+    +    ++R L  +++ +S  S + K
Sbjct:   723 LVLNNICIPQADEVTYLGVHLDRRLTWRKHIEAKSKHLKLKARNLHWLINARSPLSLEFK 782

Query:   195 MLIRMYKSLIRSKLDYGCPAYNSASANTLQILNPVQNLCLRLATGA 240
              L+  Y S+++    YG   + +AS + + I+   Q+  LR+ TGA
Sbjct:   783 ALL--YNSVLKPIWTYGSELWGNASRSNIDIIQRAQSRILRIITGA 826
GO:0006278 "RNA-dependent DNA replication" evidence=IEA
GO:0003964 "RNA-directed DNA polymerase activity" evidence=IEA
GO:0003723 "RNA binding" evidence=IEA
ASPGD|ASPL0000033911 AN2796 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000077547 AN8648 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000055652 AN0368 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000040226 AN2661 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query535
cd01650220 cd01650, RT_nLTR_like, RT_nLTR: Non-LTR (long term 3e-15
cd09276128 cd09276, Rnase_HI_RT_non_LTR, non-LTR RNase HI dom 6e-11
pfam00078194 pfam00078, RVT_1, Reverse transcriptase (RNA-depen 8e-07
cd06222123 cd06222, RNase_H, RNase H is an endonuclease that 1e-05
cd09273135 cd09273, RNase_HI_RT_Bel, Bel/Pao family of RNase 2e-04
COG0328154 COG0328, RnhA, Ribonuclease HI [DNA replication, r 8e-04
>gnl|CDD|238827 cd01650, RT_nLTR_like, RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT) Back     alignment and domain information 
 Score = 74.6 bits (184), Expect = 3e-15
 Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 17/123 (13%)

Query: 44  GIPQGGVASSTLFAIAINTITSYI---------HPSLSSSLFVDDFAIFTRDKNKDLLIS 94
           G+ QG   S  LF +A++ +   +          P ++   + DD  +F+  K++     
Sbjct: 106 GVRQGDPLSPLLFNLALDDLLRLLNKEEEIKLGGPGITHLAYADDIVLFSEGKSRK---- 161

Query: 95  TMQESIDKLNHFSDQTGLYFSPQKTQCVLFSRKYKQNNIAVNLTMYDSRIEVVDQFRFLG 154
            +QE + +L  +S ++GL  +P K++ +L   K K+      +T+  + IE V+ F++LG
Sbjct: 162 -LQELLQRLQEWSKESGLKINPSKSKVMLIGNKKKRLKD---ITLNGTPIEAVETFKYLG 217

Query: 155 LTF 157
           +T 
Sbjct: 218 VTI 220

This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities. Length = 220
>gnl|CDD|187700 cd09276, Rnase_HI_RT_non_LTR, non-LTR RNase HI domain of reverse transcriptases Back     alignment and domain information
>gnl|CDD|215698 pfam00078, RVT_1, Reverse transcriptase (RNA-dependent DNA polymerase) Back     alignment and domain information
>gnl|CDD|187690 cd06222, RNase_H, RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner Back     alignment and domain information
>gnl|CDD|187697 cd09273, RNase_HI_RT_Bel, Bel/Pao family of RNase HI in long-term repeat retroelements Back     alignment and domain information
>gnl|CDD|223405 COG0328, RnhA, Ribonuclease HI [DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 535
cd01650220 RT_nLTR_like RT_nLTR: Non-LTR (long terminal repea 99.7
cd01651226 RT_G2_intron RT_G2_intron: Reverse transcriptases 99.67
cd01648119 TERT TERT: Telomerase reverse transcriptase (TERT) 99.66
PF00078214 RVT_1: Reverse transcriptase (RNA-dependent DNA po 99.65
cd01709346 RT_like_1 RT_like_1: A subfamily of reverse transc 99.63
cd03487214 RT_Bac_retron_II RT_Bac_retron_II: Reverse transcr 99.62
cd01646158 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcrip 99.56
cd0030498 RT_like RT_like: Reverse transcriptase (RT, RNA-de 99.37
cd03714119 RT_DIRS1 RT_DIRS1: Reverse transcriptases (RTs) oc 98.81
KOG4768|consensus796 98.71
cd01645213 RT_Rtv RT_Rtv: Reverse transcriptases (RTs) from r 98.68
COG0328154 RnhA Ribonuclease HI [DNA replication, recombinati 98.66
PF00075132 RNase_H: RNase H; InterPro: IPR002156 The RNase H 98.4
PRK13907128 rnhA ribonuclease H; Provisional 98.37
PRK08719147 ribonuclease H; Reviewed 98.33
cd03715210 RT_ZFREV_like RT_ZFREV_like: A subfamily of revers 98.33
KOG1005|consensus888 98.31
PRK00203150 rnhA ribonuclease H; Reviewed 98.26
PRK06548161 ribonuclease H; Provisional 98.26
KOG3752|consensus371 98.13
PRK07708219 hypothetical protein; Validated 98.1
cd06222130 RnaseH RNase H (RNase HI) is an endonuclease that 97.92
PRK07238 372 bifunctional RNase H/acid phosphatase; Provisional 97.64
cd01647177 RT_LTR RT_LTR: Reverse transcriptases (RTs) from r 97.61
cd01644213 RT_pepA17 RT_pepA17: Reverse transcriptase (RTs) i 95.79
PF1396686 zf-RVT: zinc-binding in reverse transcriptase 95.3
cd01699278 RNA_dep_RNAP RNA_dep_RNAP: RNA-dependent RNA polym 93.2
PF1345687 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EH 92.06
PF0900442 DUF1891: Domain of unknown function (DUF1891); Int 85.53
>cd01650 RT_nLTR_like RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT) Back     alignment and domain information 
Probab=99.70  E-value=1.7e-17  Score=157.09  Aligned_cols=106  Identities=29%  Similarity=0.623  Sum_probs=93.6

Q ss_pred             CCCCCCchhHHHHHHHhhchhhhcC---------CCceeEEeecceEEEEecCChHHHHHHHHHHHHHHHHHHhhcCccc
Q psy3306          44 GIPQGGVASSTLFAIAINTITSYIH---------PSLSSSLFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYF  114 (535)
Q Consensus        44 GvpQGs~LSP~Lf~l~~~~l~~~~~---------~~~~~~~yADD~~i~~~~~~~~~~~~~l~~~l~~l~~w~~~~gl~l  114 (535)
                      |+|||++|||+||++|++++.+.+.         ..+.+..||||+++++.+..     ..++..++.+.+|+..+|+++
T Consensus       106 GipQG~~lSp~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~yaDD~~i~~~~~~-----~~~~~~~~~~~~~~~~~gl~i  180 (220)
T cd01650         106 GVRQGDPLSPLLFNLALDDLLRLLNKEEEIKLGGPGITHLAYADDIVLFSEGKS-----RKLQELLQRLQEWSKESGLKI  180 (220)
T ss_pred             CCccCCcccHHHHHHHHHHHHHHHHhhccccCCCCccceEEeccceeeeccCCH-----HHHHHHHHHHHHHHHHcCCEE
Confidence            9999999999999999999998764         56789999999999988876     238999999999999999999


Q ss_pred             cCCceeEEEecccCcCCCCCceeeecCeeeeeeccccceeeEe
Q psy3306         115 SPQKTQCVLFSRKYKQNNIAVNLTMYDSRIEVVDQFRFLGLTF  157 (535)
Q Consensus       115 n~~Kt~~~~~~~~~~~~~~~~~~~~~g~~I~~~~~~kyLGv~i  157 (535)
                      |++||+++.++......   ..+..++..+..++.+||||++|
T Consensus       181 n~~Kt~~~~~~~~~~~~---~~~~~~~~~~~~~~~~kyLG~~i  220 (220)
T cd01650         181 NPSKSKVMLIGNKKKRL---KDITLNGTPIEAVETFKYLGVTI  220 (220)
T ss_pred             ChhheEEEEecCCCcch---hhhhhcCCcccCCCCCeeccccC
Confidence            99999999998876554   33677888899999999999875

This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities.
>cd01651 RT_G2_intron RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin Back     alignment and domain information
>cd01648 TERT TERT: Telomerase reverse transcriptase (TERT) Back     alignment and domain information
>PF00078 RVT_1: Reverse transcriptase (RNA-dependent DNA polymerase); InterPro: IPR000477 The use of an RNA template to produce DNA, for integration into the host genome and exploitation of a host cell, is a strategy employed in the replication of retroid elements, such as the retroviruses and bacterial retrons Back     alignment and domain information
>cd01709 RT_like_1 RT_like_1: A subfamily of reverse transcriptases (RTs) Back     alignment and domain information
>cd03487 RT_Bac_retron_II RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons Back     alignment and domain information
>cd01646 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons Back     alignment and domain information
>cd00304 RT_like RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family Back     alignment and domain information
>cd03714 RT_DIRS1 RT_DIRS1: Reverse transcriptases (RTs) occurring in the DIRS1 group of retransposons Back     alignment and domain information
>KOG4768|consensus Back     alignment and domain information
>cd01645 RT_Rtv RT_Rtv: Reverse transcriptases (RTs) from retroviruses (Rtvs) Back     alignment and domain information
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site Back     alignment and domain information
>PRK13907 rnhA ribonuclease H; Provisional Back     alignment and domain information
>PRK08719 ribonuclease H; Reviewed Back     alignment and domain information
>cd03715 RT_ZFREV_like RT_ZFREV_like: A subfamily of reverse transcriptases (RTs) found in sequences similar to the intact endogenous retrovirus ZFERV from zebrafish and to Moloney murine leukemia virus RT Back     alignment and domain information
>KOG1005|consensus Back     alignment and domain information
>PRK00203 rnhA ribonuclease H; Reviewed Back     alignment and domain information
>PRK06548 ribonuclease H; Provisional Back     alignment and domain information
>KOG3752|consensus Back     alignment and domain information
>PRK07708 hypothetical protein; Validated Back     alignment and domain information
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner Back     alignment and domain information
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional Back     alignment and domain information
>cd01647 RT_LTR RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template Back     alignment and domain information
>cd01644 RT_pepA17 RT_pepA17: Reverse transcriptase (RTs) in retrotransposons Back     alignment and domain information
>PF13966 zf-RVT: zinc-binding in reverse transcriptase Back     alignment and domain information
>cd01699 RNA_dep_RNAP RNA_dep_RNAP: RNA-dependent RNA polymerase (RdRp) is an essential protein encoded in the genomes of all RNA containing viruses with no DNA stage Back     alignment and domain information
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B Back     alignment and domain information
>PF09004 DUF1891: Domain of unknown function (DUF1891); InterPro: IPR015095 This domain is found at the extreme N terminus of eukaryotic alkylated DNA repair protein homologs Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query535
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
3p1g_A165 Xenotropic murine leukemia virus-related virus (X 5e-05
3kyl_A596 Telomerase reverse transcriptase; reverse transcri 5e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 51.4 bits (122), Expect = 6e-07
 Identities = 92/635 (14%), Positives = 187/635 (29%), Gaps = 205/635 (32%)

Query: 5   HKWNLRGHLPNFLFKYMDERSFKIRLN--NSTLS-QDFSNVCGIPQGGVASSTLFAIAIN 61
           H++  +  L  F   ++D    K   +   S LS ++  ++         +  LF   ++
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73

Query: 62  TITSYIHPSLSSSLFVDDFAIFTRDKNKDLLISTMQ-ESIDKLNHFSDQTGLYFSPQKTQ 120
                         FV++        N   L+S ++ E        S  T +Y   +   
Sbjct: 74  ------KQEEMVQKFVEE----VLRINYKFLMSPIKTEQRQP----SMMTRMYIEQR--- 116

Query: 121 CVLFSRKYKQNNIAVNLTMYD-SRIEVVDQFRFLGLTFDKKMNWKIHLRNLKQSCVARSR 179
                R Y  N +      Y+ SR++   + R               L  L+ +      
Sbjct: 117 ----DRLYNDNQV---FAKYNVSRLQPYLKLR-------------QALLELRPA----KN 152

Query: 180 ILKIL-----SKKSW-ASDRKMLIRMYKSLIRSKLDYGCPAY--NSASANTL-QILNPVQ 230
           +  ++     S K+W A D   +   YK  ++ K+D+    +  N  + N+   +L  +Q
Sbjct: 153 V--LIDGVLGSGKTWVALD---VCLSYK--VQCKMDFK--IFWLNLKNCNSPETVLEMLQ 203

Query: 231 NLCLRLA-TGAFRSSPVVSLEAETGEPNLDIRRKMLTCNYITKVLSIENHPNAMRILNPL 289
            L  ++      RS    +++        ++RR          +L  + + N + +L  +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR----------LLKSKPYENCLLVLLNV 253

Query: 290 YKPK-----------------YENSNIKPTVGIQKKNLED-TIPFN-----SIMLKA--- 323
              K                  + ++          +L+  ++        S++LK    
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 324 ----LPKE-----PWLLK-----------SPKYDLSLSTYKKESMPAQFFQNEFKNKIEE 363
               LP+E     P  L            +      ++  K  ++           +  +
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 364 NFKDHVKIFTDGSKNDLGVGCALTIPERNIS-------------------KRFALNKNA- 403
            F     +F   +           IP   +S                   K   + K   
Sbjct: 374 MFDRLS-VFPPSAH----------IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 404 ----SIFHAELLALLQSLITIKELGVNKALIITDSLM--YPWKSSCQKSRLDEVCLMRMR 457
               SI  +  L L   L     L  +++++   ++   +          LD        
Sbjct: 423 ESTISI-PSIYLELKVKLENEYAL--HRSIVDHYNIPKTFDS-DDLIPPYLD-------- 470

Query: 458 LG--HSKITHSHLFRREDRPMCQQCQVPMTIEHILIACRNMRF--------RPPSFSSTS 507
               +S I H HL         +  +       + +   + RF             +S S
Sbjct: 471 -QYFYSHIGH-HLKN------IEHPERMTLFRMVFL---DFRFLEQKIRHDSTAWNASGS 519

Query: 508 ISD-----------ILKND---EGTLKEVLQFLKR 528
           I +           I  ND   E  +  +L FL +
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A Length = 165 Back     alignment and structure
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A Length = 596 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query535
3kyl_A596 Telomerase reverse transcriptase; reverse transcri 99.43
2zd1_A557 Reverse transcriptase/ribonuclease H; P51/P66, het 99.22
1mu2_A555 HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polym 99.16
2kq2_A147 Ribonuclease H-related protein; PSI, NESG, protein 98.76
2qkb_A154 Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hy 98.67
3fsi_A255 RT, reverse transcriptase domain; transferase/DNA 98.51
3p1g_A165 Xenotropic murine leukemia virus-related virus (X 98.48
4htu_A134 Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, 98.46
3hst_B141 Protein RV2228C/MT2287; ribonuclease H1, RV2228C N 98.46
2ehg_A149 Ribonuclease HI; RNAse HI, hyperthermophilic archa 98.43
1zbf_A142 Ribonuclease H-related protein; RNAse H, RNA/DNA h 98.41
3h08_A146 RNH (ribonuclease H); RNAse H, 3D-structure, endon 98.4
3u3g_D140 Ribonuclease H, RNAse H1; hydrolase, cleave the RN 98.39
3qio_A150 GAG-POL polyprotein; RNAse H, inhibitor, nuclease, 98.3
2e4l_A158 Ribonuclease HI, RNAse HI; hydrolase, endoribonucl 98.28
1jl1_A155 Ribonuclease HI; RNAse HI, protein stability, ther 98.28
1ril_A166 Ribonuclease H; hydrolase(endoribonuclease); 2.80A 98.18
1rw3_A455 POL polyprotein; RNA and DNA dependent DNA polymer 98.07
2lsn_A165 Reverse transcriptase; RNAse H, viral protein; NMR 98.07
2zd1_B428 P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleosid 97.94
1xr5_A466 Genome polyprotein; RNA-dependent RNA polymerase, 93.87
1ra6_A461 P3D, genome polyprotein; nucleotidyltransferase, R 93.55
3uqs_A515 RNA-dependent RNA polymerase; transferase; 2.00A { 88.33
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A Back     alignment and structure
Probab=99.43  E-value=9.7e-14  Score=138.05  Aligned_cols=103  Identities=14%  Similarity=0.179  Sum_probs=78.6

Q ss_pred             hhhhhCCC---CChHHHHHHHhcCCceEEEEECCeecccccccccCCCCCCchhHHHHHHHhhchhhhc----CCCceeE
Q psy3306           2 RQLHKWNL---RGHLPNFLFKYMDERSFKIRLNNSTLSQDFSNVCGIPQGGVASSTLFAIAINTITSYI----HPSLSSS   74 (535)
Q Consensus         2 ~~L~~~g~---~~~~~~~I~~~l~~r~~~v~~~~~~s~~~~~~~~GvpQGs~LSP~Lf~l~~~~l~~~~----~~~~~~~   74 (535)
                      +.|+..+.   ++.+.+||+.++..--  |+++|..    ...+.|+|||+||||+|.|+|++++.+.+    ..+..++
T Consensus       266 k~L~~~i~~IlDk~Il~LIkk~Lka~L--V~igGk~----y~qekGTPQGGVISPLLANIYLheLDkel~~~l~kd~~LV  339 (596)
T 3kyl_A          266 KLIQSIPTHLLDSEKKNFIVDHISNQF--VAFRRKI----YKWNHGLLQGDPLSGCLCELYMAFMDRLYFSNLDKDAFIH  339 (596)
T ss_dssp             HHHTTSCTTTSCHHHHHHHHHHHHCEE--EESSSSE----EEECSSSCBTCTTHHHHHHHHHHHHHHHHSTTSCTTSEEE
T ss_pred             HHHHhhccccccHHHHHHHHHHHhhCe--EEECCEE----EecCCcccCCcchhHHHHHHHHHHHHHHHHHhhccCceEE
Confidence            34555554   5677889998886532  6677744    46789999999999999999999998775    3467899


Q ss_pred             EeecceEEEEecCChHHHHHHHHHHHHHHHHHHhhcCccccCCceeE
Q psy3306          75 LFVDDFAIFTRDKNKDLLISTMQESIDKLNHFSDQTGLYFSPQKTQC  121 (535)
Q Consensus        75 ~yADD~~i~~~~~~~~~~~~~l~~~l~~l~~w~~~~gl~ln~~Kt~~  121 (535)
                      .||||+++++.+...      +++.++.+..|     +++|++||.+
T Consensus       340 RYADDFVIi~~Ske~------Aerfl~~Lkg~-----leLNpEKTrI  375 (596)
T 3kyl_A          340 RTVDDYFFCSPHPHK------VYDFELLIKGV-----YQVNPTKTRT  375 (596)
T ss_dssp             ECSSEEEEEESCHHH------HHHHHHHHHHH-----SCEEEEEEEE
T ss_pred             EEcCcEEEEECCHHH------HHHHHHHhhCc-----ceECchhcee
Confidence            999999999976543      55555555555     3999999986
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ... Back     alignment and structure
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B Back     alignment and structure
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A Back     alignment and structure
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A* Back     alignment and structure
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ... Back     alignment and structure
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A Back     alignment and structure
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A Back     alignment and structure
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis} Back     alignment and structure
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A Back     alignment and structure
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A* Back     alignment and structure
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum} Back     alignment and structure
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism} Back     alignment and structure
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A Back     alignment and structure
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A Back     alignment and structure
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ... Back     alignment and structure
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A Back     alignment and structure
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2 Back     alignment and structure
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus} Back     alignment and structure
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ... Back     alignment and structure
>1xr5_A Genome polyprotein; RNA-dependent RNA polymerase, transferase; 2.80A {Human rhinovirus 14} SCOP: e.8.1.4 Back     alignment and structure
>1ra6_A P3D, genome polyprotein; nucleotidyltransferase, RNA-dependent, polym terminus, transferase; 2.00A {Human poliovirus 1} SCOP: e.8.1.4 PDB: 1ra7_A* 2ily_A* 2ilz_A* 2im0_A* 2im1_A* 2im2_A* 2im3_A* 2ijf_A 3ol9_A* 3ol7_A 3ol8_A 3ol6_A* 3ola_A* 3olb_A* 1tql_A 1rdr_A 1raj_A 3ddk_A 3cdu_A 3cdw_A Back     alignment and structure
>3uqs_A RNA-dependent RNA polymerase; transferase; 2.00A {Murine norovirus} PDB: 3ur0_A* 3upf_A* 3sfg_A* 3nah_A 3nai_A 3qid_A* 3sfu_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query535
d1s1ta1110 HIV RNase H (Domain of reverse transcriptase) {Hum 98.73
d1zbfa1132 BH0863-like Ribonuclease H {Bacillus halodurans [T 98.6
d1mu2a1126 HIV RNase H (Domain of reverse transcriptase) {Hum 98.53
d1ztwa1255 MMLV reverse transcriptase {Moloney murine leukemi 98.27
d1rila_147 RNase H (RNase HI) {Thermus thermophilus [TaxId: 2 98.21
d1jl1a_152 RNase H (RNase HI) {Escherichia coli [TaxId: 562]} 98.1
d1mu2a2427 HIV-1 reverse transcriptase {Human immunodeficienc 97.75
d2zd1b1424 HIV-1 reverse transcriptase {Human immunodeficienc 97.7
d1hara_216 HIV-1 reverse transcriptase {Human immunodeficienc 95.09
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: HIV RNase H (Domain of reverse transcriptase)
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=98.73  E-value=5.3e-09  Score=83.38  Aligned_cols=65  Identities=20%  Similarity=0.155  Sum_probs=47.7

Q ss_pred             CCceEEEecCCCCC--CCeeEEEEEcCCCeeeeecCCCCCCchHHHHHHHHHHHHHHHHcCCCcEEEecCCCC
Q psy3306         366 KDHVKIFTDGSKND--LGVGCALTIPERNISKRFALNKNASIFHAELLALLQSLITIKELGVNKALIITDSLM  436 (535)
Q Consensus       366 ~~~~~i~tDgS~~~--~~~g~a~~~~~~~~~~~~~l~~~~s~~~aE~~ai~~al~~~~~~~~~~~~I~tDs~s  436 (535)
                      ++...+|||||+..  +..|+|++...... ....+ ...|++.||+.|++.||+.    ...++.|+|||+.
T Consensus         6 ~~~~t~ytDGs~~~n~~~g~~g~~~~~~~~-~~~~~-~~~TNn~aEl~Avi~aL~~----~~~~v~I~TDS~y   72 (110)
T d1s1ta1           6 VGAETFYVDGAANRETKLGKAGYVTNRGRQ-KVVTL-TDTTNQKTELQAIYLALQD----SGLEVNIVTDSQY   72 (110)
T ss_dssp             TTSEEEEEEEEEETTTTEEEEEEEETTSCE-EEEEE-SSCCHHHHHHHHHHHHHHH----SCSEEEEEECCHH
T ss_pred             CCCcEEEEeCCCCCCCCCcEEEEEEecCCe-EEEec-ccCcHHHHHHHHHHHHHHh----CCCeEEEEEehHH
Confidence            45678999999744  33566666655433 23333 3579999999999999974    4578999999998
>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]} Back     information, alignment and structure
>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney murine leukemia virus, MoMLV [TaxId: 11801]} Back     information, alignment and structure
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]} Back     information, alignment and structure
>d2zd1b1 e.8.1.2 (B:5-428) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure
>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure