Psyllid ID: psy3386

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70------
Protein Sequence
MFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKCLSSG
Secondary Structure (PSIPRED)
ccccccccccEEEEccccccccccccccEEEEEEccccEEEEEEEEEEEcccccccccccccccEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEccccccccccccEEEEEEEEEccccEEEEEEEcHHHHHHHHHcccccccccEEEEEEEEcccc
Coil and Loop (DISEMBL)
mfnstgghrngtftspnfpglyprdtechyffygrnDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKCLSSG
Flexible Loop (DISEMBL)
mfnstgghrngtftspnfpglypRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKCLSSG
Low Complexity Region (SEG)
MFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKCLSSG
Disordered region (IsUnstruct)
*****************FPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKCL***
Disordered Region (DISOPRED)
*FN****HRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKCL***
Disordered Region (DISEMBL)
********RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKCLSSG
Disordered Region (DISPRO)
**********GTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKCLS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKCLSSG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	76	2.2.26 [Sep-21-2011]
Q93212	594	Suppressor of lurcher pro	yes	N/A	0.605	0.077	0.531	9e-07

>sp|Q93212|SOL1_CAEEL Suppressor of lurcher protein 1 OS=Caenorhabditis elegans GN=sol-1 PE=1 SV=3

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 2   FNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
           FNS+  H NG   S N+PGLYPR+  C Y F+GRND+ + + FE FD
Sbjct: 439 FNSSE-HTNGKLWSANYPGLYPRNLYCEYIFHGRNDQVVHIHFEYFD 484

Accessory protein required for glutamate-gated currents. May participate in the gating of non-NMDA (N-methyl-D-aspartate) ionotropic glutamate receptors such as glr-1.
Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
328783696	635	PREDICTED: cubilin-like [Apis mellifera]	0.513	0.061	0.775	7e-10
443694215	332	hypothetical protein CAPTEDRAFT_226257 [	0.513	0.117	0.743	9e-10
357606909	684	hypothetical protein KGM_16882 [Danaus p	0.447	0.049	0.65	9e-10
443694214	126	hypothetical protein CAPTEDRAFT_27776, p	0.513	0.309	0.743	1e-09
322780192	191	hypothetical protein SINV_01179 [Solenop	0.618	0.246	0.645	3e-09
383860913	312	PREDICTED: suppressor of lurcher protein	0.513	0.125	0.725	3e-09
340725396	650	PREDICTED: cubilin-like [Bombus terrestr	0.447	0.052	0.725	4e-09
350403715	624	PREDICTED: cubilin-like [Bombus impatien	0.473	0.057	0.725	4e-09
391343436	531	PREDICTED: suppressor of lurcher protein	0.513	0.073	0.666	4e-09
242008984	328	conserved hypothetical protein [Pediculu	0.618	0.143	0.625	9e-09

>gi|328783696|ref|XP_001122665.2| PREDICTED: cubilin-like [Apis mellifera]

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/40 (77%), Positives = 34/40 (85%)

Query: 9   RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
           RNGTFTSPN+PGLYPRDTECHYFF G+ +ERI L F  FD
Sbjct: 476 RNGTFTSPNYPGLYPRDTECHYFFNGQPNERIHLHFHFFD 515

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443694215|gb|ELT95408.1| hypothetical protein CAPTEDRAFT_226257 [Capitella teleta]

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/39 (74%), Positives = 33/39 (84%)

Query: 10  NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
           NGTFTSPNFPGLYPR+TECHY FYG+ +ERI + F  FD
Sbjct: 171 NGTFTSPNFPGLYPRNTECHYLFYGQENERIYITFPYFD 209

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|357606909|gb|EHJ65280.1| hypothetical protein KGM_16882 [Danaus plexippus]

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 31/40 (77%)

Query: 9   RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
           R G  TSPN+PGLYPRDTEC+YFF+ R +ER+ L F  FD
Sbjct: 534 RKGVMTSPNYPGLYPRDTECNYFFHARKNERVHLKFSHFD 573

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443694214|gb|ELT95407.1| hypothetical protein CAPTEDRAFT_27776, partial [Capitella teleta]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/39 (74%), Positives = 33/39 (84%)

Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
          NGTFTSPNFPGLYPR+TECHY FYG+ +ERI + F  FD
Sbjct: 14 NGTFTSPNFPGLYPRNTECHYLFYGQENERIYITFPYFD 52

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|322780192|gb|EFZ09831.1| hypothetical protein SINV_01179 [Solenopsis invicta]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/48 (64%), Positives = 38/48 (79%), Gaps = 1/48 (2%)

Query: 1  MFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
          +FNS    RNGTF SPN+PGLYPR TEC+YFFYG+++ER+ L F  FD
Sbjct: 37 VFNSNET-RNGTFASPNYPGLYPRSTECYYFFYGQSNERVHLHFHFFD 83

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860913|ref|XP_003705932.1| PREDICTED: suppressor of lurcher protein 1-like [Megachile rotundata]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 33/40 (82%)

Query: 9   RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
           RNGTF SPN+PGLYPRDTECHYFF G+ +ER+ L F  FD
Sbjct: 179 RNGTFASPNYPGLYPRDTECHYFFNGQPNERVHLHFHFFD 218

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725396|ref|XP_003401056.1| PREDICTED: cubilin-like [Bombus terrestris]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 33/40 (82%)

Query: 9   RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
           RNGTF SPN+PGLYPRDTECHYFF G+ +ER+ L F  FD
Sbjct: 478 RNGTFASPNYPGLYPRDTECHYFFNGQLNERVHLHFHFFD 517

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403715|ref|XP_003486882.1| PREDICTED: cubilin-like [Bombus impatiens]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 33/40 (82%)

Query: 9   RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
           RNGTF SPN+PGLYPRDTECHYFF G+ +ER+ L F  FD
Sbjct: 478 RNGTFASPNYPGLYPRDTECHYFFNGQLNERVHLHFHFFD 517

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391343436|ref|XP_003746016.1| PREDICTED: suppressor of lurcher protein 1-like [Metaseiulus occidentalis]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/39 (66%), Positives = 33/39 (84%)

Query: 10  NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
           NGTFT+PN+PG+YPRDTECHY FYG++ E+I + F  FD
Sbjct: 374 NGTFTTPNYPGVYPRDTECHYLFYGKDKEKIHIQFAYFD 412

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008984|ref|XP_002425273.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212509038|gb|EEB12535.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/48 (62%), Positives = 35/48 (72%), Gaps = 1/48 (2%)

Query: 1   MFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
           +FNS    RNGTF+SPNFPG YPRDTECH+FF G   E++ L F  FD
Sbjct: 162 VFNSNES-RNGTFSSPNFPGFYPRDTECHFFFQGSQKEKVNLHFSYFD 208

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
WB|WBGene00004944	594	sol-1 [Caenorhabditis elegans	0.605	0.077	0.531	3.5e-08
FB|FBgn0261262	1146	CG42613 [Drosophila melanogast	0.539	0.035	0.414	3.8e-05
MGI|MGI:3045328	427	Cdcp2 "CUB domain containing p	0.513	0.091	0.435	0.00027
UNIPROTKB|Q5VXM1	449	CDCP2 "CUB domain-containing p	0.513	0.086	0.435	0.00047
UNIPROTKB|F1MKV7	3620	CUBN "Uncharacterized protein"	0.5	0.010	0.5	0.00094

WB|WBGene00004944 sol-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 136 (52.9 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 25/47 (53%), Positives = 32/47 (68%)

Query:     2 FNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
             FNS+  H NG   S N+PGLYPR+  C Y F+GRND+ + + FE FD
Sbjct:   439 FNSSE-HTNGKLWSANYPGLYPRNLYCEYIFHGRNDQVVHIHFEYFD 484

GO:0019915 "lipid storage" evidence=IMP

GO:0045202 "synapse" evidence=IDA

GO:0051968 "positive regulation of synaptic transmission, glutamatergic" evidence=IGI;IDA;IMP

GO:0040012 "regulation of locomotion" evidence=IGI

GO:0016247 "channel regulator activity" evidence=IDA;IMP

GO:0006972 "hyperosmotic response" evidence=IMP

GO:0001966 "thigmotaxis" evidence=IMP

GO:0032589 "neuron projection membrane" evidence=IDA

GO:0008328 "ionotropic glutamate receptor complex" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

FB|FBgn0261262 CG42613 [Drosophila melanogaster (taxid:7227)]

 Score = 111 (44.1 bits), Expect = 3.8e-05, P = 3.8e-05
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query:     8 HRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
             ++ G   SP +PG YP+D  C Y F G +++R++L F  FD
Sbjct:   390 NKTGALISPTYPGAYPKDMSCTYQFLGESNQRVRLEFRDFD 430

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:3045328 Cdcp2 "CUB domain containing protein 2" [Mus musculus (taxid:10090)]

 Score = 98 (39.6 bits), Expect = 0.00027, P = 0.00027
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query:    10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
             +G F+SPNFP LYP +TEC +         + L F +FD
Sbjct:    38 SGNFSSPNFPSLYPYNTECSWLIVVAEGSSVLLTFHAFD 76

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5VXM1 CDCP2 "CUB domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 96 (38.9 bits), Expect = 0.00047, P = 0.00047
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query:    10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
             +G F+SPNFP LYP +TEC +         + L F +FD
Sbjct:    38 SGNFSSPNFPRLYPYNTECSWLIVVAEGSSVLLTFHAFD 76

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|F1MKV7 CUBN "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 103 (41.3 bits), Expect = 0.00094, P = 0.00094
 Identities = 19/38 (50%), Positives = 25/38 (65%)

Query:    10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESF 47
             +GTFTSPNFPG YP + EC Y     + ++I L F +F
Sbjct:  1052 SGTFTSPNFPGFYPNNLECIYRITVESSQQIALHFTNF 1089


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.145   0.543    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       76        76   0.00091  102 3  12 22  0.49    28
                                                     29  0.48    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  537 (57 KB)
  Total size of DFA:  105 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.31u 0.08s 7.39t   Elapsed:  00:00:18
  Total cpu time:  7.31u 0.08s 7.39t   Elapsed:  00:00:18
  Start:  Thu Aug 15 14:27:27 2013   End:  Thu Aug 15 14:27:45 2013

GO:0042953 "lipoprotein transport" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005903 "brush border" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93212	SOL1_CAEEL	No assigned EC number	0.5319	0.6052	0.0774	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	76
smart00042	102	smart00042, CUB, Domain first found in C1r, C1s, u	4e-09
cd00041	113	cd00041, CUB, CUB domain; extracellular domain; pr	6e-09
pfam00431	110	pfam00431, CUB, CUB domain	5e-07

>gnl|CDD|214483 smart00042, CUB, Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein

 Score = 48.2 bits (115), Expect = 4e-09
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 11 GTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
          GT TSPN+P  YP + +C +        RI+L F  FD
Sbjct: 1  GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFD 38

This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain. Length = 102

>gnl|CDD|238001 cd00041, CUB, CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast

 Score = 48.2 bits (115), Expect = 6e-09
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 7  GHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
             +GT +SPN+P  YP +  C +        RI+L FE FD
Sbjct: 7  ASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFD 48

Length = 113

>gnl|CDD|215916 pfam00431, CUB, CUB domain

 Score = 43.1 bits (102), Expect = 5e-07
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
          +G+ TSPN+P  YP + +C +        RI L F+ FD
Sbjct: 9  SGSITSPNYPNSYPPNKDCVWTIRAPPGYRISLTFQDFD 47

Length = 110

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	76
smart00042	102	CUB Domain first found in C1r, C1s, uEGF, and bone	99.5
PF00431	110	CUB: CUB domain CUB domain entry Spermadhesins fam	99.49
cd00041	113	CUB CUB domain; extracellular domain; present in p	99.48
KOG4292|consensus	454		98.75
KOG4586|consensus	156		98.06
KOG4292|consensus	454		97.73
PF02408	120	CUB_2: CUB-like domain; InterPro: IPR003366 This d	94.63

>smart00042 CUB Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein

Probab=99.50  E-value=1.3e-13  Score=80.72  Aligned_cols=56  Identities=30%  Similarity=0.513  Sum_probs=46.7

Q ss_pred             eEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEEec
Q psy3386          11 GTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKCL   73 (76)
Q Consensus        11 G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~~~   73 (76)
                      |.|.||+||..||++..|.|.|+++++.+|.|+|+.|+|+.    ..   .|..+.+...++.
T Consensus         1 G~i~Sp~yP~~y~~~~~C~w~i~~~~g~~i~l~f~~~~l~~----~~---~C~~d~l~i~~g~   56 (102)
T smart00042        1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLES----SD---NCEYDYVEIYDGP   56 (102)
T ss_pred             CEEeCCCCCcCCCCCCcEEEEEECCCCeEEEEEEEEEeccC----CC---CeeEeEEEEEeCC
Confidence            78999999999999999999999999999999999999997    22   3554555554443

This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.

>PF00431 CUB: CUB domain CUB domain entry Spermadhesins family entry Link to schematic domain picture by Peer Bork

Probab=99.49  E-value=2e-13  Score=80.31  Aligned_cols=46  Identities=33%  Similarity=0.609  Sum_probs=40.1

Q ss_pred             CcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCc
Q psy3386           6 GGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWW   51 (76)
Q Consensus         6 ~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~   51 (76)
                      .....|.|+||+||..||.+..|.|.|+++++++|.|+|..|+|+.
T Consensus         5 ~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~I~l~f~~~~~~~   50 (110)
T PF00431_consen    5 LTNNSGIISSPNYPSNYPSNSDCTWTITAPPGHRIRLTFLSFDLES   50 (110)
T ss_dssp             ECSSEEEEESTTTTS-SSSSEEEEEEEE-STTEEEEEEEEEEEB--
T ss_pred             EECCeEEEECCCCCCCCCCCCcEeEEEEecccceeeecccccccee
Confidence            4567899999999999999999999999999999999999999997

; InterPro: IPR000859 The CUB domain (for complement C1r/C1s, Uegf, Bmp1) is a structural motif of approximately 110 residues found almost exclusively in extracellular and plasma membrane-associated proteins, many of which are developmentally regulated [, ]. These proteins are involved in a diverse range of functions, including complement activation, developmental patterning, tissue repair, axon guidance and angiogenesis, cell signalling, fertilisation, haemostasis, inflammation, neurotransmission, receptor-mediated endocytosis, and tumour suppression [, ]. Many CUB-containing proteins are peptidases belonging to MEROPS peptidase families M12A (astacin) and S1A (chymotrypsin). Proteins containing a CUB domain include: Mammalian complement subcomponents C1s/C1r, which form the calcium-dependent complex C1, the first component of the classical pathway of the complement system. Cricetidae sp. (Hamster) serine protease Casp, which degrades type I and IV collagen and fibronectin in the presence of calcium. Mammalian complement-activating component of Ra-reactive factor (RARF), a protease that cleaves the C4 component of complement. Vertebrate enteropeptidase (3.4.21.9 from EC), a type II membrane protein of the intestinal brush border, which activates trypsinogen. Vertebrate bone morphogenic protein 1 (BMP-1), a protein which induces cartilage and bone formation and expresses metalloendopeptidase activity. Sea urchin blastula proteins BP10 and SpAN. Caenorhabditis elegans hypothetical proteins F42A10.8 and R151.5. Neuropilin (A5 antigen), a calcium-independent cell adhesion molecule that functions during the formation of certain neuronal circuits. Fibropellins I and III from Strongylocentrotus purpuratus (Purple sea urchin). Mammalian hyaluronate-binding protein TSG-6 (or PS4), a serum and growth factor induced protein. Mammalian spermadhesins. Xenopus laevis embryonic protein UVS.2, which is expressed during dorsoanterior development. Several of the above proteins consist of a catalytic domain together with several CUB domains interspersed by calcium-binding EGF domains. Some CUB domains appear to be involved in oligomerisation and/or recognition of substrates and binding partners. For example, in the complement proteases, the CUB domains mediate dimerisation and binding to collagen-like regions of target proteins (e.g. C1q for C1r/C1s). The structure of CUB domains consists of a beta-sandwich with a jelly-roll fold. Almost all CUB domains contain four conserved cysteines that probably form two disulphide bridges (C1-C2, C3-C4). The CUB1 domains of C1s and Map19 have calcium-binding sites [].; PDB: 1SFP_A 3KQ4_B 2WNO_A 2QQK_A 2QQL_A 2QQO_B 2QQM_A 3POJ_A 3POB_A 3POG_B ....

>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast

Probab=99.48  E-value=2.1e-13  Score=80.37  Aligned_cols=60  Identities=28%  Similarity=0.466  Sum_probs=49.9

Q ss_pred             ccc-ceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEEec
Q psy3386           7 GHR-NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKCL   73 (76)
Q Consensus         7 ~~~-~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~~~   73 (76)
                      ... .|.|.||+||..||++..|.|.|+++++++|.|+|+.|+|+.    .   ..|..+.+..+++.
T Consensus         6 ~~~~~g~i~Sp~~p~~~~~~~~C~w~i~~~~g~~i~l~f~~~~l~~----~---~~C~~d~l~i~~g~   66 (113)
T cd00041           6 TASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLES----S---PNCSYDYLEIYDGP   66 (113)
T ss_pred             ccCCCeEEECCCCCCCCCCCCcEEEEEEcCCCCEEEEEEeCccccc----C---CCCCCcEEEEEcCC
Confidence            344 899999999999999999999999999999999999999997    2   35655555555543

>KOG4292|consensus

Probab=98.75  E-value=1.8e-08  Score=73.76  Aligned_cols=50  Identities=24%  Similarity=0.402  Sum_probs=46.0

Q ss_pred             ccCCCcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCc
Q psy3386           2 FNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWW   51 (76)
Q Consensus         2 ~ns~~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~   51 (76)
                      .|+++....|.++||+||..|+++..|+|++.++.++.+.+.|+.|-+|.
T Consensus       292 C~~~~~~~~G~~~Sp~yp~~y~~~l~Ct~~l~~~~g~~l~v~fh~~~~~~  341 (454)
T KOG4292|consen  292 CNRTYHGKFGNLTSPGYPQNYPNNLDCTTHLTVPGGHTLVVFFHEFSIEN  341 (454)
T ss_pred             cccceecceeEEcCCCCcccCCCCCcceEEEEcCCCCEEEEEeecccchh
Confidence            57778888999999999999999999999999999999999988887776

>KOG4586|consensus

Probab=98.06  E-value=1.6e-05  Score=50.51  Aligned_cols=44  Identities=30%  Similarity=0.542  Sum_probs=40.4

Q ss_pred             ccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEE-eEEEeCc
Q psy3386           8 HRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVF-ESFDDWW   51 (76)
Q Consensus         8 ~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F-~~f~le~   51 (76)
                      +..+.++||+||..||++.+|...|.+.+-+-|.+.| +.|.+|.
T Consensus        47 ~n~~Iftspn~ps~ypp~r~cv~vi~~~p~~~ve~~Fde~y~IEp   91 (156)
T KOG4586|consen   47 QNFNIFTSPNFPSRYPPNRDCVRVIHSRPQHDVEVKFDEVYHIEP   91 (156)
T ss_pred             cccceEecCCccccCCCCcceEEeEecccccceEEeeeeeEEecc
Confidence            4567899999999999999999999999999999999 5689997

>KOG4292|consensus

Probab=97.73  E-value=2.9e-05  Score=57.22  Aligned_cols=65  Identities=20%  Similarity=0.235  Sum_probs=52.5

Q ss_pred             cCCCcc-cceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeE
Q psy3386           3 NSTGGH-RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSI   70 (76)
Q Consensus         3 ns~~~~-~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~   70 (76)
                      +.++.. ..|.+.+|++|..|+....|.|.+.+++++++.+++..+++..   ....|..-+..++...
T Consensus       170 ~~t~~~q~sg~~~~~~~p~~~v~s~~c~Wli~t~p~q~l~irv~~~~~~p---t~n~c~s~~L~i~m~~  235 (454)
T KOG4292|consen  170 NITFTTQNSGSIPSPNDPDTYVASSICNWLIDTPPGQRLYIRVVHLHLAP---TINECESASLTIFMSY  235 (454)
T ss_pred             ceeecCcccccccCCCCcccccccchhhhhhhcCCCcceeEEEEeccCCc---ccccccceeEEEEecc
Confidence            334344 4499999999999999999999999999999999999998876   3455777676666554

>PF02408 CUB_2: CUB-like domain; InterPro: IPR003366 This domain is found in a family of hypothetical Caenorhabditis elegans proteins

Probab=94.63  E-value=0.073  Score=32.45  Aligned_cols=25  Identities=16%  Similarity=0.361  Sum_probs=22.1

Q ss_pred             CCCCCceeEEEEEeCCCceEEEEEe
Q psy3386          21 LYPRDTECHYFFYGRNDERIKLVFE   45 (76)
Q Consensus        21 ~Yp~~~~C~W~I~~~~g~~I~L~F~   45 (76)
                      .+|.+..|.|.|.+|.|..++|++.
T Consensus        37 ~~p~n~~C~y~i~iP~G~~a~v~~~   61 (120)
T PF02408_consen   37 QFPANQNCTYQINIPKGYYAKVTLS   61 (120)
T ss_pred             ccCCCCceEEEEEcCCceEEEEEEE
Confidence            4788899999999999999998764

The aligned region has no known function nor do any of the proteins which possess it. However, this domain is related to the CUB domain (IPR000859 from INTERPRO). The aligned region is approximately 130 amino acids long and contains two conserved cysteine residues.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	76
3dem_A	278	Complement factor MAsp-3; complement system, innat	8e-10
3dem_A	278	Complement factor MAsp-3; complement system, innat	5e-08
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	1e-09
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	3e-09
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	4e-07
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	2e-06
2wno_A	149	Tumor necrosis factor-inducible gene 6 protein; gl	2e-09
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	2e-09
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	2e-08
1nzi_A	159	Complement C1S component; calcium, innate immunity	3e-09
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	3e-09
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	3e-08
3poj_A	115	Mannan-binding lectin serine protease 1; CUB domai	6e-09
1szb_A	170	Mannose binding lectin-associated serine protease-	1e-08
2qqm_A	450	Neuropilin-1; VEGF receptor, semaphorin receptor,	1e-08
2qqo_A	460	Neuropilin-2; VEGF receptor, semaphorin receptor,	2e-08
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	4e-08
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	3e-07
1spp_A	109	Major seminal plasma glycoprotein PSP-I; seminal p	4e-05
1sfp_A	114	ASFP; spermadhesin, bovine seminal plasma protein,	3e-04
1spp_B	116	Major seminal plasma glycoprotein PSP-II; seminal	4e-04

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens} Length = 278

 Score = 51.9 bits (124), Expect = 8e-10
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 9  RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
            G   SP +P  YP D+E  +     +  RIKL F  F+
Sbjct: 8  MFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFN 47

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens} Length = 278

 Score = 46.9 bits (111), Expect = 5e-08
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 9   RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDD 49
           R G  TSP+FP  YP+ +EC Y         + L FE   D
Sbjct: 174 RTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFD 214

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Length = 457

 Score = 51.4 bits (123), Expect = 1e-09
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 10  NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
           +GTF SPN+P  Y   +EC+++    +    +L F+ F 
Sbjct: 242 SGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFH 280

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Length = 457

 Score = 50.3 bits (120), Expect = 3e-09
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 9  RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
            GT  SP  P +YP    C +    + +  I L+FE+F 
Sbjct: 8  STGTIQSPGHPNVYPHGINCTWHILVQPNHLIHLMFETFH 47

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Length = 457

 Score = 44.1 bits (104), Expect = 4e-07
 Identities = 8/48 (16%), Positives = 14/48 (29%)

Query: 1   MFNSTGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
                     G   S  +P  Y  +  C++         +   F +FD
Sbjct: 348 ENVVIVNQTYGILESIGYPNPYSENQHCNWTIRATTGNTVNYTFLAFD 395

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Length = 457

 Score = 42.6 bits (100), Expect = 2e-06
 Identities = 18/39 (46%), Positives = 22/39 (56%)

Query: 10  NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
            GTFTSPNFP  YP + EC Y    R  + I + F +F 
Sbjct: 125 LGTFTSPNFPNNYPNNWECIYRITVRTGQLIAVHFTNFS 163

>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens} Length = 149

 Score = 49.3 bits (118), Expect = 2e-09
 Identities = 13/40 (32%), Positives = 18/40 (45%)

Query: 9  RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
              F SP FP  Y  +  C++    +  +RI L F  FD
Sbjct: 14 PKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFD 53

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1 Length = 286

 Score = 50.7 bits (121), Expect = 2e-09
 Identities = 10/39 (25%), Positives = 15/39 (38%)

Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
           G   SP FP  Y    +  +        R++L F  F+
Sbjct: 8  FGRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFN 46

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1 Length = 286

 Score = 48.0 bits (114), Expect = 2e-08
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 9   RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVF-ESFD 48
           R+G  +SP +P  YP+ + C Y         I L F ESFD
Sbjct: 173 RSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFD 213

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Length = 159

 Score = 49.4 bits (118), Expect = 3e-09
 Identities = 12/39 (30%), Positives = 15/39 (38%)

Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
           G   SPN+P  YP + E  +         I L F   D
Sbjct: 5  YGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLD 43

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens} Length = 361

 Score = 50.0 bits (119), Expect = 3e-09
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
           G   SP +P  YP D+E  +     +  RIKL F  F+
Sbjct: 9  FGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFN 47

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens} Length = 361

 Score = 47.3 bits (112), Expect = 3e-08
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 9   RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDD 49
           R G  TSP+FP  YP+ +EC Y         + L FE   D
Sbjct: 174 RTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFD 214

>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A Length = 115

 Score = 47.7 bits (114), Expect = 6e-09
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 9  RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDD 49
          R GT TSP++P  YP+ +EC Y         + L FE   D
Sbjct: 12 RTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFD 52

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Length = 170

 Score = 48.0 bits (114), Expect = 1e-08
 Identities = 14/39 (35%), Positives = 17/39 (43%)

Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
           G   SP FPG Y  D E  +        R++L F  FD
Sbjct: 12 FGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFD 50

>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1 Length = 450

 Score = 48.5 bits (115), Expect = 1e-08
 Identities = 17/39 (43%), Positives = 19/39 (48%)

Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
          +G   SP FP  YP   EC Y  +      I L FESFD
Sbjct: 19 SGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFD 57

>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens} Length = 460

 Score = 48.2 bits (114), Expect = 2e-08
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
          NGT  SP FP  YP + +C +    +    I L F  FD
Sbjct: 16 NGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFD 54

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A Length = 579

 Score = 46.9 bits (111), Expect = 4e-08
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 10  NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
           NGT  SP FP  YP + +C +    +    I L F  FD
Sbjct: 135 NGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFD 173

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A Length = 579

 Score = 44.6 bits (105), Expect = 3e-07
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRND-ERIKLVFESFDD 49
           G  TSP +P  YP    C +  Y     ++I L F    +
Sbjct: 15 AGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFE 55

>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1 Length = 109

 Score = 37.4 bits (87), Expect = 4e-05
 Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 5/39 (12%)

Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
           GT  +   P      TEC +        ++ +   + +
Sbjct: 14 YGTIFTYKGP-----KTECVWTLQVDPKYKLLVSIPTLN 47

>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1 Length = 114

 Score = 35.4 bits (82), Expect = 3e-04
 Identities = 4/39 (10%), Positives = 12/39 (30%), Gaps = 5/39 (12%)

Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
          +G   +      Y   T C +      +  +++  +   
Sbjct: 18 SGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQ 51

>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1 Length = 116

 Score = 35.1 bits (81), Expect = 4e-04
 Identities = 3/39 (7%), Positives = 16/39 (41%), Gaps = 5/39 (12%)

Query: 10 NGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFD 48
          +G+ ++ +          C +    + D+++++     +
Sbjct: 17 SGSISNTDRQKNL-----CTWTILMKPDQKVRMAIPYLN 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	76
1nzi_A	159	Complement C1S component; calcium, innate immunity	99.65
2wno_A	149	Tumor necrosis factor-inducible gene 6 protein; gl	99.65
1szb_A	170	Mannose binding lectin-associated serine protease-	99.64
3poj_A	115	Mannan-binding lectin serine protease 1; CUB domai	99.62
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	99.58
3dem_A	278	Complement factor MAsp-3; complement system, innat	99.55
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	99.54
2qqo_A	460	Neuropilin-2; VEGF receptor, semaphorin receptor,	99.48
2qqm_A	450	Neuropilin-1; VEGF receptor, semaphorin receptor,	99.48
3dem_A	278	Complement factor MAsp-3; complement system, innat	99.48
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	99.43
4gz9_A	577	Neuropilin-1, A5 protein; multi-domain, cell-CELL	99.4
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	99.39
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	99.36
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	99.35
4gz9_A	577	Neuropilin-1, A5 protein; multi-domain, cell-CELL	99.35
1spp_A	109	Major seminal plasma glycoprotein PSP-I; seminal p	99.28
1spp_B	116	Major seminal plasma glycoprotein PSP-II; seminal	99.28
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	99.24
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	99.23
1sfp_A	114	ASFP; spermadhesin, bovine seminal plasma protein,	99.22

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=99.65  E-value=4.2e-16  Score=97.43  Aligned_cols=58  Identities=24%  Similarity=0.339  Sum_probs=49.0

Q ss_pred             cccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEE
Q psy3386           7 GHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIK   71 (76)
Q Consensus         7 ~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~   71 (76)
                      ++..|.|+||+||..||++..|.|.|+++++++|+|+|.+|+||.    ..   .|..+.+..++
T Consensus         2 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~----~~---~C~~D~l~i~d   59 (159)
T 1nzi_A            2 PTMYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIEL----SE---NCAYDSVQIIS   59 (159)
T ss_dssp             CCSEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCC----CG---GGCSSEEEEEC
T ss_pred             CCCCEEEECCCCccCCCCCCCEEEEEEeCCCCEEEEEEeEEEecC----CC---CCCCCEEEEEe
Confidence            467899999999999999999999999999999999999999997    23   45545554444

>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}

Probab=99.65  E-value=6.8e-16  Score=96.81  Aligned_cols=61  Identities=25%  Similarity=0.364  Sum_probs=51.4

Q ss_pred             CcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEEec
Q psy3386           6 GGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKCL   73 (76)
Q Consensus         6 ~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~~~   73 (76)
                      .....|.|+||+||..||++..|.|.|+++++++|+|+|.+|+||.    ..   .|..+.+..+++.
T Consensus        11 l~~~~G~i~SP~yP~~Yp~n~~C~W~I~~~~g~~I~L~F~~f~le~----~~---~C~~D~l~I~dg~   71 (149)
T 2wno_A           11 FTDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLED----DP---GCLADYVEIYDSY   71 (149)
T ss_dssp             ECSSEEEEECTTTTSCCCTTCEEEEEEECCTTCEEEEEEEEEECCC----CT---TCCSSEEEEESSS
T ss_pred             EECCceEEECCCCCcCCCCCCEEEEEEEECCCCEEEEEEEEEEecC----CC---CCCCCEEEEecCC
Confidence            3456799999999999999999999999999999999999999997    22   5655666665543

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=99.64  E-value=7.6e-16  Score=97.66  Aligned_cols=58  Identities=26%  Similarity=0.389  Sum_probs=49.7

Q ss_pred             cccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEE
Q psy3386           7 GHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIK   71 (76)
Q Consensus         7 ~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~   71 (76)
                      ++..|.|+||+||..||++..|.|.|+++++++|+|+|.+|+||..    .   .|..+.+..++
T Consensus         9 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~----~---~C~~D~l~i~d   66 (170)
T 1szb_A            9 EPVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELS----H---LCEYDFVKLSS   66 (170)
T ss_dssp             CCCEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEECCCC----T---TSCSSEEEEES
T ss_pred             cCCCeEEECCCCCcCCcCCCcEEEEEEcCCCCEEEEEEEEEEccCC----C---CCCCCEEEEEe
Confidence            5678999999999999999999999999999999999999999972    2   56555555544

>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A

Probab=99.62  E-value=8.3e-16  Score=91.91  Aligned_cols=60  Identities=32%  Similarity=0.460  Sum_probs=48.9

Q ss_pred             cccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEe-EEEeCccccCCCcCCCCcceEEEeEE
Q psy3386           7 GHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFE-SFDDWWWIWLRQHCLGCKNFIIHSIK   71 (76)
Q Consensus         7 ~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~-~f~le~~~~~~~~C~~c~~~~i~~~~   71 (76)
                      +...|.|+||+||..||++..|.|.|+++++++|+|+|. .|+||..  ...   .|..+.+..++
T Consensus        10 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~i~l~f~d~f~le~~--~~~---~C~~D~l~i~d   70 (115)
T 3poj_A           10 TQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDH--PEV---PCPYDYIKIKA   70 (115)
T ss_dssp             CSSEEEEECTTTTSCCCTTCEEEEEEECCTTCCCEEEECSCCBBCCC--SSS---SSCSCEEEEEE
T ss_pred             cCCCEEEcCCCCCcCCcCCCeEEEEEEcCCCCEEEEEEecceecccC--CCC---CCCCeEEEEEc
Confidence            467899999999999999999999999999999999999 5999973  122   45445554444

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}

Probab=99.58  E-value=3.9e-15  Score=103.13  Aligned_cols=45  Identities=31%  Similarity=0.457  Sum_probs=43.1

Q ss_pred             cccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCc
Q psy3386           7 GHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWW   51 (76)
Q Consensus         7 ~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~   51 (76)
                      +...|+|+||+||+.||+++.|.|.|++++|++|+|+|.+|+||.
T Consensus         6 t~~~G~i~SP~yP~~Yp~n~~C~W~I~~~~g~~I~l~F~~f~lE~   50 (361)
T 4aqb_A            6 NNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLES   50 (361)
T ss_dssp             ESSEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCC
T ss_pred             eCCeEEEeCCCCCCCCCCCCeEEEEEEECCCCEEEEEEeEEEecC
Confidence            457799999999999999999999999999999999999999997

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}

Probab=99.55  E-value=1.3e-14  Score=97.52  Aligned_cols=59  Identities=25%  Similarity=0.306  Sum_probs=49.1

Q ss_pred             CcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEE
Q psy3386           6 GGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIK   71 (76)
Q Consensus         6 ~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~   71 (76)
                      .++..|.|+||+||..||++..|.|.|+++++++|+|+|.+|+||.+    .   .|..+.+..++
T Consensus         5 lt~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~L~F~~f~le~~----~---~C~~D~l~v~d   63 (278)
T 3dem_A            5 LNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESS----Y---LCEYDYVKVET   63 (278)
T ss_dssp             --CCEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCC----G---GGCSSEEEEEC
T ss_pred             eccCCceEeCCCCCCCCcCCCcEEEEEEECCCCEEEEEEEEEEeCCC----C---CCCCcEEEEec
Confidence            35678999999999999999999999999999999999999999972    2   45555555544

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1

Probab=99.54  E-value=1.8e-14  Score=97.63  Aligned_cols=58  Identities=19%  Similarity=0.308  Sum_probs=49.3

Q ss_pred             cccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEE
Q psy3386           7 GHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIK   71 (76)
Q Consensus         7 ~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~   71 (76)
                      ++..|.|+||+||..||++..|.|.|++++|++|+|+|..|+||.    ..   .|..+.+..++
T Consensus         5 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~p~g~~I~L~F~~f~le~----~~---~C~~D~l~I~d   62 (286)
T 1nt0_A            5 EPVFGRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLEL----SY---RCEYDFVKLTS   62 (286)
T ss_dssp             CCCEEEEECTTTTSCCCSSCCEEEEEECCTTEEEEEEEEEEECCC----CG---GGCSSEEEEEE
T ss_pred             cCCCceEeCCCCCccCcCCCcEEEEEEcCCCCEEEEEEEEEEecC----CC---CCCCcEEEEEC
Confidence            567899999999999999999999999999999999999999997    22   45545554444

>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}

Probab=99.48  E-value=9.4e-14  Score=99.39  Aligned_cols=67  Identities=25%  Similarity=0.295  Sum_probs=50.9

Q ss_pred             CCcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEEe
Q psy3386           5 TGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKC   72 (76)
Q Consensus         5 ~~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~~   72 (76)
                      ++....|.|+||+||..||++..|.|.|++++|++|.|+|..|+||.+... ..=..|..+.+..+++
T Consensus        11 ~l~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~L~F~~f~le~~~~~-~~~~~C~~D~l~i~dg   77 (460)
T 2qqo_A           11 NFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQ-VGEGDCKYDWLDIWDG   77 (460)
T ss_dssp             EECSSEEEEECTTTTSCCCSSCEEEEEEECCTTCEEEEEEEEEECCCC---------CCSSEEEEESS
T ss_pred             EEeCCceEEeCCCCCCCCCCCCEEEEEEEcCCCCEEEEEEEEEEccccccc-ccCCCCCCCEEEEEcC
Confidence            345678999999999999999999999999999999999999999973100 0001465566665554

>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1

Probab=99.48  E-value=7.4e-14  Score=99.59  Aligned_cols=65  Identities=28%  Similarity=0.382  Sum_probs=51.4

Q ss_pred             CCcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcC--CCCcceEEEeEEe
Q psy3386           5 TGGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHC--LGCKNFIIHSIKC   72 (76)
Q Consensus         5 ~~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C--~~c~~~~i~~~~~   72 (76)
                      +.....|.|+||+||..||++..|.|.|+++++++|.|+|.+|+||.+   ...+  ..|..+.+..+++
T Consensus        14 ~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~---~~~~~~~~C~~D~l~i~dg   80 (450)
T 2qqm_A           14 NYTTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPD---SNPPGGMFCRYDRLEIWDG   80 (450)
T ss_dssp             EECSSEEEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCC-------CCCSSCSSEEEEESS
T ss_pred             eEeCCcEEEeCCCCCcCCCCCCeEEEEEEeCCCCEEEEEEEEEEeEec---cCCCCCCCCCCcEEEEecC
Confidence            345668999999999999999999999999999999999999999973   1100  1466566666554

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}

Probab=99.48  E-value=9.6e-14  Score=93.22  Aligned_cols=60  Identities=32%  Similarity=0.455  Sum_probs=49.6

Q ss_pred             cccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeE-EEeCccccCCCcCCCCcceEEEeEE
Q psy3386           7 GHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFES-FDDWWWIWLRQHCLGCKNFIIHSIK   71 (76)
Q Consensus         7 ~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~-f~le~~~~~~~~C~~c~~~~i~~~~   71 (76)
                      +...|.|+||+||..||++..|.|.|+++++++|.|+|.+ |+||.+.  ..   .|..+.+.+++
T Consensus       172 ~~~~G~i~SP~yP~~Yp~~~~C~w~i~~~~g~~i~l~f~~~f~le~~~--~~---~C~~D~l~i~d  232 (278)
T 3dem_A          172 TQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHP--EV---PCPYDYIKIKV  232 (278)
T ss_dssp             CSSEEEEESTTTTSCCCSSCEEEEEEECCTTCCEEEEECSCCBBCCCS--SS---SSSSCEEEEEE
T ss_pred             cCCccceeCCCCCCCCCCcCeEEEEEEeCCCcEEEEEEccccccccCC--CC---CCCCCEEEEec
Confidence            5678999999999999999999999999999999999997 9999731  22   45555555444

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1

Probab=99.43  E-value=2.5e-13  Score=91.92  Aligned_cols=60  Identities=27%  Similarity=0.386  Sum_probs=46.9

Q ss_pred             cccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEe-EEEeCccccCCCcCCCCcceEEEeEE
Q psy3386           7 GHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFE-SFDDWWWIWLRQHCLGCKNFIIHSIK   71 (76)
Q Consensus         7 ~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~-~f~le~~~~~~~~C~~c~~~~i~~~~   71 (76)
                      ....|.|+||+||..||++..|.|.|++++|++|+|+|. .|+||.+.  ..   .|..+.+..++
T Consensus       171 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~~f~le~~~--~~---~C~~D~l~i~d  231 (286)
T 1nt0_A          171 TGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMHP--EA---QCPYDSLKIQT  231 (286)
T ss_dssp             CSSSEEEECTTTTSCCCSSCEEEEEEECCSSCEEEEEECSCCBBCCC---------C--CEEEEEC
T ss_pred             cCCceEEeCCCCCCCCCCCCEEEEEEECCCceEEEEEEeceEEeccCC--CC---CCCCcEEEEEe
Confidence            567899999999999999999999999999999999996 89999731  22   45545555443

>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H

Probab=99.40  E-value=7.1e-13  Score=97.44  Aligned_cols=67  Identities=27%  Similarity=0.362  Sum_probs=53.7

Q ss_pred             CcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEEec
Q psy3386           6 GGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKCL   73 (76)
Q Consensus         6 ~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~~~   73 (76)
                      +....|.|.||+||..||++..|.|.|++++|++|.|+|.+|+||.+. .......|..+.+.++++.
T Consensus       133 ~~~~~G~i~SPnyP~~Yp~n~~C~W~I~~p~g~~I~L~F~~F~lE~~~-~~~~~~~C~~D~l~I~dG~  199 (577)
T 4gz9_A          133 YTAPTGVIKSPGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEQDS-NPPGGMFCRYDRLEIWDGF  199 (577)
T ss_dssp             ECSSEEEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCCC-SCSTTCCCCSSEEEEESSS
T ss_pred             ecCCCccccCCCCCCCCCCCceEEEEEEECCCCEEEEEEEEEEeeecC-CCCCCCccCccEEEEEcCC
Confidence            346789999999999999999999999999999999999999999731 0111234777777766654

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}

Probab=99.39  E-value=8.2e-13  Score=94.05  Aligned_cols=58  Identities=16%  Similarity=0.355  Sum_probs=49.6

Q ss_pred             ccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEEe
Q psy3386           8 HRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKC   72 (76)
Q Consensus         8 ~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~~   72 (76)
                      ...|.|.||+||+.||++..|.|.|++++|++|+|+|..|+||.    ..   .|..+.+..+++
T Consensus       355 ~~~G~i~Sp~yP~~Yp~~~~C~w~i~~~~g~~i~l~f~~f~le~----~~---~C~~D~l~i~dg  412 (457)
T 3kq4_B          355 QTYGILESIGYPNPYSENQHCNWTIRATTGNTVNYTFLAFDLEH----HI---NCSTDYLELYDG  412 (457)
T ss_dssp             CSSEEEECTTTTSCCCSSCEEEEEEECSTTCCCEEEEEEEECCC----CT---TTTSSEEEEEET
T ss_pred             ceeeEEecCCCCccCCCCCceEEEEEcCCCCEEEEEEeEEEEcc----CC---CCCceEEEEEeC
Confidence            35699999999999999999999999999999999999999996    22   466666666554

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}

Probab=99.36  E-value=1.5e-12  Score=92.74  Aligned_cols=61  Identities=23%  Similarity=0.374  Sum_probs=52.6

Q ss_pred             CcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEEec
Q psy3386           6 GGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKCL   73 (76)
Q Consensus         6 ~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~~~   73 (76)
                      .....|.|+||+||..||++..|.|.|+++++++|+|+|.+|+||.+       ..|..+.+..+++.
T Consensus       238 ~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~~~~i~l~f~~f~le~~-------~~C~~D~l~i~dg~  298 (457)
T 3kq4_B          238 LTTSSGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFHLEHH-------PNCTLDYLAVYDGP  298 (457)
T ss_dssp             CCSSEEEEECTTTTSCCCSSCEEEEEECCSTTCCEEEEEEECCCCCC-------TTCCSSEEEEEESS
T ss_pred             EccCcceeccCCCCCCCCCCCEEEEEEEeCCCCEEEEEEEeeeecCC-------CCcCCCEEEEEeCC
Confidence            45678999999999999999999999999999999999999999973       35666777666654

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A

Probab=99.35  E-value=1.7e-12  Score=94.93  Aligned_cols=67  Identities=25%  Similarity=0.321  Sum_probs=47.9

Q ss_pred             CcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEEec
Q psy3386           6 GGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKCL   73 (76)
Q Consensus         6 ~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~~~   73 (76)
                      +....|.|+||+||..||++..|.|.|+++++++|.|+|..|+||.+.. ...-..|..+.+..+++.
T Consensus       131 ~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~F~~f~le~~~~-~~~~~~C~~D~l~I~dg~  197 (579)
T 2qqk_A          131 FTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPL-QVGEGDCKYDWLDIWDGI  197 (579)
T ss_dssp             ECCSEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEEC--------------CCEEEEESSS
T ss_pred             eccCCceecCCCCcccCCCCCeEEEEEEcCCCCEEEEEEEEEEeecccc-cccCCCCCCEEEEEEeCC
Confidence            4567899999999999999999999999999999999999999997310 001125666666666553

>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H

Probab=99.35  E-value=1.5e-12  Score=95.74  Aligned_cols=57  Identities=26%  Similarity=0.450  Sum_probs=47.7

Q ss_pred             cceEEECCCCCCCCCCCceeEEEEEeCCC-ceEEEEEe-EEEeCccccCCCcCCCCcceEEEeEEec
Q psy3386           9 RNGTFTSPNFPGLYPRDTECHYFFYGRND-ERIKLVFE-SFDDWWWIWLRQHCLGCKNFIIHSIKCL   73 (76)
Q Consensus         9 ~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g-~~I~L~F~-~f~le~~~~~~~~C~~c~~~~i~~~~~~   73 (76)
                      ..|.|+||+||..||++..|.|.|++|.+ ++|.|+|+ .|+||..        .|..+.+..+++.
T Consensus        17 ~~G~i~SPnyP~~Yp~n~~C~W~I~~p~~~~~I~L~F~~~f~le~~--------~C~~Dyl~I~dG~   75 (577)
T 4gz9_A           17 NPGYLTSPGYPHSYHPSEKCEWLIQAPEPYQRIMINFNPHFDLEDR--------DCKYDYVEVIDGE   75 (577)
T ss_dssp             SCEEEECTTTTTCCCSSCEEEEEEECSSTTCCEEEEECSCCBCCCG--------GGTSSEEEEEESS
T ss_pred             CCEEEeCCCCCCCCCCCCeEEEEEEECCCCcEEEEEEEeeeeecCC--------CCCccEEEEEeCC
Confidence            46999999999999999999999999866 68999996 7999962        4666666666654

>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1

Probab=99.28  E-value=1.3e-11  Score=73.46  Aligned_cols=51  Identities=12%  Similarity=0.136  Sum_probs=41.9

Q ss_pred             CcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEEe
Q psy3386           6 GGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKC   72 (76)
Q Consensus         6 ~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~~   72 (76)
                      ..+..|.|+||     ||++..|.|.|++++|++|+|+|.+|+|+           |..+.+..+++
T Consensus        10 l~~~~G~i~SP-----Yp~~~~C~w~I~~~~g~~I~l~f~~f~l~-----------C~~D~l~I~dg   60 (109)
T 1spp_A           10 LTDDYGTIFTY-----KGPKTECVWTLQVDPKYKLLVSIPTLNLT-----------CGKEYVEVLEG   60 (109)
T ss_dssp             EECSEEEEECC-----CSSCSEEEEEEECCTTSEEEEEEEEEECC-----------TTTEEEEEESS
T ss_pred             EeCCcEEEeCC-----CCCCCcEEEEEEcCCCCEEEEEEeeeecc-----------CCCCEEEEEeC
Confidence            34567999998     88999999999999999999999999973           45555555544

>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1

Probab=99.28  E-value=1.5e-11  Score=73.79  Aligned_cols=40  Identities=8%  Similarity=0.239  Sum_probs=36.2

Q ss_pred             CcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeC
Q psy3386           6 GGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDW   50 (76)
Q Consensus         6 ~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le   50 (76)
                      .....|.|+||     ||++..|.|.|++++|++|+|+|.+|+|+
T Consensus        13 l~~~~G~i~SP-----Yp~~~~C~w~I~~~~g~~I~l~f~~f~l~   52 (116)
T 1spp_B           13 IKDTSGSISNT-----DRQKNLCTWTILMKPDQKVRMAIPYLNLA   52 (116)
T ss_dssp             ECCSEEEEECC-----SSCCSEEEEEEECCTTCEEEEEEEEEECC
T ss_pred             EeCCceEEeCC-----CcCCCCEEEEEEeCCCCEEEEEEeeCccc
Confidence            34567999998     88999999999999999999999999983

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A

Probab=99.24  E-value=1.5e-11  Score=89.96  Aligned_cols=56  Identities=29%  Similarity=0.547  Sum_probs=47.5

Q ss_pred             cceEEECCCCCCCCCCCceeEEEEEeCC-CceEEEEEe-EEEeCccccCCCcCCCCcceEEEeEEe
Q psy3386           9 RNGTFTSPNFPGLYPRDTECHYFFYGRN-DERIKLVFE-SFDDWWWIWLRQHCLGCKNFIIHSIKC   72 (76)
Q Consensus         9 ~~G~i~SP~yP~~Yp~~~~C~W~I~~~~-g~~I~L~F~-~f~le~~~~~~~~C~~c~~~~i~~~~~   72 (76)
                      ..|.|+||+||..||++..|.|.|+++. +++|.|.|. .|+||.+        .|..+.+..+++
T Consensus        14 ~~G~i~SP~yP~~Yp~~~~C~w~I~~p~~~~~I~l~F~~~f~le~~--------~C~~D~l~i~dg   71 (579)
T 2qqk_A           14 DAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIEKH--------DCKYDFIEIRDG   71 (579)
T ss_dssp             SCEEEECTTTTSCCCSSCCEEEEEECSSTTSEEEEEECSCCBCCCT--------TSSSSEEEEEES
T ss_pred             CCeEEeCCCCCCCCcCCCEEEEEEEECCCCcEEEEEEecccccccC--------CCCeeEEEEEeC
Confidence            5799999999999999999999999996 679999999 8999961        466566665554

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}

Probab=99.23  E-value=2.5e-11  Score=83.93  Aligned_cols=46  Identities=37%  Similarity=0.576  Sum_probs=41.9

Q ss_pred             CcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeE-EEeCc
Q psy3386           6 GGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFES-FDDWW   51 (76)
Q Consensus         6 ~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~-f~le~   51 (76)
                      +....|.|+||+||..||++..|.|.|++++|++|.|+|.+ |++|.
T Consensus       171 ~~~~~G~i~SP~yP~~Yp~~~~C~w~i~~~~g~~i~l~f~~~~~~e~  217 (361)
T 4aqb_A          171 FTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIED  217 (361)
T ss_dssp             BCSSEEEEESTTTTSCCCSSCEEEEEEECCTTCEEEEEECSCCBBCC
T ss_pred             EeCCCcEEecCCCCCCCCCCceeeEEeeeccCcEEEEEEeecccccC
Confidence            45678999999999999999999999999999999999986 67775

>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1

Probab=99.22  E-value=4.8e-11  Score=71.26  Aligned_cols=39  Identities=10%  Similarity=0.209  Sum_probs=35.6

Q ss_pred             CcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEe
Q psy3386           6 GGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDD   49 (76)
Q Consensus         6 ~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~l   49 (76)
                      .....|.|+||     ||++..|.|.|++++|++|+|+|.+|+|
T Consensus        14 l~~~~G~i~Sp-----y~~~~~C~w~I~~~~g~~I~l~f~~f~l   52 (114)
T 1sfp_A           14 LKEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQL   52 (114)
T ss_dssp             ECCSEEEEECC-----CSSCSEEEEEEECCTTCEEEEEEEEEEC
T ss_pred             EECCcEEEeCC-----CcCCCCEEEEEEeCCCCEEEEEEeeeee
Confidence            34567999997     8889999999999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	76
d1nzia1	117	b.23.1.1 (A:1-117) Complement C1S component {Human	9e-07
d1szba1	121	b.23.1.1 (A:3-123) Mannose-binding protein associa	2e-05
d2qqma3	108	b.23.1.1 (A:156-263) Mannose-binding protein assoc	7e-05
d1nt0a2	114	b.23.1.1 (A:165-278) Mannose-binding protein assoc	3e-04

>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 9e-07
 Identities = 12/50 (24%), Positives = 16/50 (32%)

Query: 11 GTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCL 60
          G   SPN+P  YP + E  +         I L F   D           +
Sbjct: 6  GEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSV 55

>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 2e-05
 Identities = 14/54 (25%), Positives = 19/54 (35%)

Query: 11 GTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKN 64
          G   SP FPG Y  D E  +        R++L F  FD           +   +
Sbjct: 11 GRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSHLCEYDFVKLSS 64

>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 7e-05
 Identities = 18/66 (27%), Positives = 21/66 (31%)

Query: 11 GTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSI 70
          G   SP FP  YP   EC Y  +      I L FESFD               + +    
Sbjct: 1  GVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWD 60

Query: 71 KCLSSG 76
               G
Sbjct: 61 GFPDVG 66

>d1nt0a2 b.23.1.1 (A:165-278) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 114

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.1 bits (77), Expect = 3e-04
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 1/69 (1%)

Query: 9  RNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVF-ESFDDWWWIWLRQHCLGCKNFII 67
          R+G  +SP +P  YP+ + C Y         I L F ESFD       +      K    
Sbjct: 9  RSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMHPEAQCPYDSLKIQTD 68

Query: 68 HSIKCLSSG 76
                  G
Sbjct: 69 KREYGPFCG 77

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	76
d2qqma3	108	Mannose-binding protein associated serine protease	99.69
d1szba1	121	Mannose-binding protein associated serine protease	99.67
d1nzia1	117	Complement C1S component {Human (Homo sapiens) [Ta	99.67
d1nt0a2	114	Mannose-binding protein associated serine protease	99.55
d1sppb_	112	Major seminal plasma glycoprotein PSP-II {Pig (Sus	99.28
d1sppa_	109	Major seminal plasma glycoprotein PSP-I {Pig (Sus	99.21
d1sfpa_	111	Acidic seminal fluid protein (ASFP) {Cow (Bos taur	99.09

>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4e-17  Score=94.54  Aligned_cols=62  Identities=29%  Similarity=0.408  Sum_probs=49.5

Q ss_pred             eEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCccccCCCcCCCCcceEEEeEEec
Q psy3386          11 GTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWWWIWLRQHCLGCKNFIIHSIKCL   73 (76)
Q Consensus        11 G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~~~~~~~~C~~c~~~~i~~~~~~   73 (76)
                      |.|+||+||..||++..|.|.|+++++++|+|+|.+|+||... .......|..+.+..+.+.
T Consensus         1 G~i~SP~yP~~Y~~~~~C~w~I~~p~~~~I~l~f~~f~l~~~~-~~~~~~~C~~D~l~i~dg~   62 (108)
T d2qqma3           1 GVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDS-NPPGGMFCRYDRLEIWDGF   62 (108)
T ss_dssp             EEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCC-----CCCSSCSSEEEEESSS
T ss_pred             CEEeCCCCCCCCCCCCeEEEEEEeCCCceeeeEEEEEEeeccc-ccccCCCccccEEEEEecc
Confidence            8999999999999999999999999999999999999998631 1223445776666665543

>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.1e-16  Score=94.76  Aligned_cols=45  Identities=31%  Similarity=0.492  Sum_probs=42.6

Q ss_pred             cccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCc
Q psy3386           7 GHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWW   51 (76)
Q Consensus         7 ~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~   51 (76)
                      ....|.|+||+||..||++..|.|.|+++++++|.|+|.+|+||.
T Consensus         7 ~~~~G~i~SP~yP~~Yp~~~~C~W~I~~p~g~~I~l~f~~fdle~   51 (121)
T d1szba1           7 EPVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLEL   51 (121)
T ss_dssp             CCCEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEECCC
T ss_pred             CCCCeEEeCCCCCCCCCCCCeEEEEEEeCCCceeEEEeeeeeeee
Confidence            345799999999999999999999999999999999999999997

>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.2e-16  Score=94.05  Aligned_cols=44  Identities=27%  Similarity=0.369  Sum_probs=42.0

Q ss_pred             ccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeCc
Q psy3386           8 HRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDWW   51 (76)
Q Consensus         8 ~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le~   51 (76)
                      +..|.|+||+||..||++..|.|.|++++|++|.|+|.+|+||.
T Consensus         3 ~~~G~i~SP~yP~~Yp~~~~C~w~I~~p~g~~I~l~f~~f~le~   46 (117)
T d1nzia1           3 TMYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIEL   46 (117)
T ss_dssp             CSEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCC
T ss_pred             CcEEEEeCCCCCCCCCCCCcEEEEEEcCCCCcEEEEEEeeeEee
Confidence            35699999999999999999999999999999999999999997

>d1nt0a2 b.23.1.1 (A:165-278) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=5.4e-15  Score=86.88  Aligned_cols=45  Identities=33%  Similarity=0.522  Sum_probs=41.7

Q ss_pred             cccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEe-EEEeCc
Q psy3386           7 GHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFE-SFDDWW   51 (76)
Q Consensus         7 ~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~-~f~le~   51 (76)
                      ++..|.|+||+||..||++..|.|.|++++|++|.|+|. .|+||.
T Consensus         7 ~~~~G~i~SP~yP~~Y~~~~~C~w~I~~p~g~~i~l~F~~~f~le~   52 (114)
T d1nt0a2           7 TGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEM   52 (114)
T ss_dssp             CSSSEEEECTTTTSCCCSSCEEEEEEECCSSCEEEEEECSCCBBCC
T ss_pred             cCCCEEEECCCCCCCCCCCCeEEEEEEeCCCCceeeEEeeeecccc
Confidence            467799999999999999999999999999999999995 689986

>d1sppb_ b.23.1.1 (B:) Major seminal plasma glycoprotein PSP-II {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Major seminal plasma glycoprotein PSP-II
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.28  E-value=5.5e-12  Score=74.01  Aligned_cols=40  Identities=8%  Similarity=0.228  Sum_probs=36.3

Q ss_pred             CcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeC
Q psy3386           6 GGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDW   50 (76)
Q Consensus         6 ~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le   50 (76)
                      .+...|.|.||+||+.|     |.|.|+++++++|+|+|.+|+++
T Consensus        13 l~~~~G~i~SP~~P~~~-----C~W~I~~p~~~~I~l~f~~f~~~   52 (112)
T d1sppb_          13 IKDTSGSISNTDRQKNL-----CTWTILMKPDQKVRMAIPYLNLA   52 (112)
T ss_dssp             ECCSEEEEECCSSCCSE-----EEEEEECCTTCEEEEEEEEEECC
T ss_pred             EeCCcceEeCCCCCCCc-----eEEEEecCCcEEEEEEEEehhcc
Confidence            35678999999999876     99999999999999999999976

>d1sppa_ b.23.1.1 (A:) Major seminal plasma glycoprotein PSP-I {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Major seminal plasma glycoprotein PSP-I
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.21  E-value=2.7e-11  Score=70.42  Aligned_cols=40  Identities=15%  Similarity=0.132  Sum_probs=35.5

Q ss_pred             CcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeC
Q psy3386           6 GGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDW   50 (76)
Q Consensus         6 ~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le   50 (76)
                      ..+..|.|+||+||+     .+|.|.|++++|++|+|+|..|+++
T Consensus        10 l~~~~G~i~Sp~yP~-----~~C~W~I~~p~g~~I~l~f~~f~~~   49 (109)
T d1sppa_          10 LTDDYGTIFTYKGPK-----TECVWTLQVDPKYKLLVSIPTLNLT   49 (109)
T ss_dssp             EECSEEEEECCCSSC-----SEEEEEEECCTTSEEEEEEEEEECC
T ss_pred             EeCCCEEEeCCCCCC-----CcEEEEEEEccCceeEEEEeccccc
Confidence            356789999999984     5899999999999999999999875

>d1sfpa_ b.23.1.1 (A:) Acidic seminal fluid protein (ASFP) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Acidic seminal fluid protein (ASFP)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.09  E-value=2e-10  Score=66.62  Aligned_cols=40  Identities=10%  Similarity=0.174  Sum_probs=35.1

Q ss_pred             CcccceEEECCCCCCCCCCCceeEEEEEeCCCceEEEEEeEEEeC
Q psy3386           6 GGHRNGTFTSPNFPGLYPRDTECHYFFYGRNDERIKLVFESFDDW   50 (76)
Q Consensus         6 ~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~~~g~~I~L~F~~f~le   50 (76)
                      ..+..|.|+||     |+++..|.|.|++++|++|.|+|.+|+++
T Consensus        11 lt~~~G~i~SP-----y~~~~~C~w~I~~p~g~~I~l~f~~f~~~   50 (111)
T d1sfpa_          11 LKEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQLN   50 (111)
T ss_dssp             ECCSEEEEECC-----CSSCSEEEEEEECCTTCEEEEEEEEEECC
T ss_pred             EECCceeEcCC-----CCCCCcEEEEEEcCCCceeeEEEeecccc
Confidence            35667999998     56688999999999999999999999875