Psyllid ID: psy3409

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MANRYYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINSTYFDSKVNFLGRKFLTGN
Secondary Structure (PSIPRED)
cccEEEEEEEEccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccEEEEEEEccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEcccccEEEEEcccccccccccHHHHHHHHHHHHHHHcccccccccEEEEEEEEEccEEEEEEEcccccEEEEEEccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MANRYYFVMvgrednplyqrgfsckeandneNKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKyslnpfykintpinstyfdskvnflgrkfltgn
Flexible Loop (DISEMBL)
manryyfvmvgrednplyqRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTpinstyfdskvnflgrkfltgn
Low Complexity Region (SEG)
MANRYYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINSTYFDSKVNFLGRKFLTGN
Disordered region (IsUnstruct)
***RYYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINSTYFDSKVNFLGRKFL***
Disordered Region (DISOPRED)
*ANRYYFVMVGREDNPLYQRG*************YYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINSTYFDSKVNFLGRKFLT**
Disordered Region (DISEMBL)
MANRYYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINSTYFDSKVNFLGRKFLTGN
Disordered Region (DISPRO)
*ANRYYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINSTYFDSKVNFLGRKFLTG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANRYYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINSTYFDSKVNFLGRKFLTGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
Q5RES6	140	Trafficking protein parti	yes	N/A	0.978	0.971	0.514	3e-38
P0DI82	140	Trafficking protein parti	no	N/A	0.978	0.971	0.514	4e-38
P0DI81	140	Trafficking protein parti	no	N/A	0.978	0.971	0.514	4e-38
F1SRI0	140	Trafficking protein parti	yes	N/A	0.978	0.971	0.507	7e-38
Q3T0F2	140	Trafficking protein parti	yes	N/A	0.978	0.971	0.507	7e-38
E2QV03	140	Trafficking protein parti	no	N/A	0.978	0.971	0.507	8e-38
D3ZVF4	140	Trafficking protein parti	yes	N/A	0.978	0.971	0.507	1e-37
Q08CN0	140	Trafficking protein parti	yes	N/A	0.978	0.971	0.5	1e-37
Q9CQP2	140	Trafficking protein parti	yes	N/A	0.978	0.971	0.507	1e-37
Q28IG8	140	Trafficking protein parti	yes	N/A	0.978	0.971	0.492	2e-37

>sp|Q5RES6|TPPC2_PONAB Trafficking protein particle complex subunit 2 OS=Pongo abelii GN=TRAPPC2 PE=2 SV=1

 Score =  156 bits (395), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 71/138 (51%), Positives = 107/138 (77%), Gaps = 2/138 (1%)

Query: 1   MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
           M+  +YFV+VG  DNP+++  F  + K  + +++++  +FIAHA+LDL+DE +W +++MY
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 59  LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
           LKT+DKFN+  VSAFVT   ++F+M+HD + E+GIK FFT VY+L+IK+S+NPFY+ N+P
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP 120

Query: 119 INSTYFDSKVNFLGRKFL 136
           I S+ FD KV FLG+K L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

Prevents ENO1-mediated transcriptional repression and antagonizes ENO1-mediated cell death. May play a role in vesicular transport from endoplasmic reticulum to Golgi.
Pongo abelii (taxid: 9601)

>sp|P0DI82|TPC2B_HUMAN Trafficking protein particle complex subunit 2 protein TRAPPC2P1 OS=Homo sapiens GN=TRAPPC2P1 PE=1 SV=1

 Score =  156 bits (394), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 71/138 (51%), Positives = 107/138 (77%), Gaps = 2/138 (1%)

Query: 1   MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
           M+  +YFV+VG  DNP+++  F  + K  + +++++  +FIAHA+LDL+DE +W +++MY
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 59  LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
           LKT+DKFN+  VSAFVT   ++F+M+HD + E+GIK FFT VY+L+IK+S+NPFY+ N+P
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP 120

Query: 119 INSTYFDSKVNFLGRKFL 136
           I S+ FD KV FLG+K L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

Prevents transcriptional repression and induction of cell death by ENO1. May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|P0DI81|TPC2A_HUMAN Trafficking protein particle complex subunit 2 OS=Homo sapiens GN=TRAPPC2 PE=1 SV=1

 Score =  156 bits (394), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 71/138 (51%), Positives = 107/138 (77%), Gaps = 2/138 (1%)

Query: 1   MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
           M+  +YFV+VG  DNP+++  F  + K  + +++++  +FIAHA+LDL+DE +W +++MY
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 59  LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
           LKT+DKFN+  VSAFVT   ++F+M+HD + E+GIK FFT VY+L+IK+S+NPFY+ N+P
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP 120

Query: 119 INSTYFDSKVNFLGRKFL 136
           I S+ FD KV FLG+K L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

Prevents transcriptional repression and induction of cell death by ENO1 (By similarity). May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|F1SRI0|TPPC2_PIG Trafficking protein particle complex subunit 2 OS=Sus scrofa GN=TRAPPC2 PE=2 SV=2

 Score =  155 bits (392), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 70/138 (50%), Positives = 107/138 (77%), Gaps = 2/138 (1%)

Query: 1   MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
           M+  +YFV+VG  DNP+++  F  + K  + +++++  +FIAHA+LDL+DE +W +++MY
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 59  LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
           LKT+DKFN+  VSAFVT   ++F+M+HD + E+GIK FFT VY+L+IK+++NPFY+ N+P
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query: 119 INSTYFDSKVNFLGRKFL 136
           I S+ FD KV FLG+K L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

Prevents ENO1-mediated transcriptional repression and antagonizes ENO1-mediated cell death. May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Sus scrofa (taxid: 9823)

>sp|Q3T0F2|TPPC2_BOVIN Trafficking protein particle complex subunit 2 OS=Bos taurus GN=TRAPPC2 PE=2 SV=1

 Score =  155 bits (392), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 70/138 (50%), Positives = 107/138 (77%), Gaps = 2/138 (1%)

Query: 1   MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
           M+  +YFV+VG  DNP+++  F  + K  + +++++  +FIAHA+LDL+DE +W +++MY
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 59  LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
           LKT+DKFN+  VSAFVT   ++F+M+HD + E+GIK FFT VY+L+IK+++NPFY+ N+P
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query: 119 INSTYFDSKVNFLGRKFL 136
           I S+ FD KV FLG+K L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

Prevents ENO1-mediated transcriptional repression and antagonizes ENO1-mediated cell death. May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Bos taurus (taxid: 9913)

>sp|E2QV03|TPPC2_CANFA Trafficking protein particle complex subunit 2 OS=Canis familiaris GN=TRAPPC2 PE=3 SV=1

 Score =  155 bits (392), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 70/138 (50%), Positives = 107/138 (77%), Gaps = 2/138 (1%)

Query: 1   MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
           M+  +YFV+VG  DNP+++  F  + K  + +++++  +FIAHA+LDL+DE +W +++MY
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 59  LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
           LKT+DKFN+  VSAFVT   ++F+M+HD + E+GIK FFT VY+L+IK+++NPFY+ N+P
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query: 119 INSTYFDSKVNFLGRKFL 136
           I S+ FD KV FLG+K L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

Prevents ENO1-mediated transcriptional repression and antagonizes ENO1-mediated cell death. May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Canis familiaris (taxid: 9615)

>sp|D3ZVF4|TPPC2_RAT Trafficking protein particle complex subunit 2 OS=Rattus norvegicus GN=Trappc2 PE=3 SV=1

 Score =  154 bits (390), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/138 (50%), Positives = 106/138 (76%), Gaps = 2/138 (1%)

Query: 1   MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
           M+  +YFV+VG  DNP+++  F  + K  + +E+++  +FIAHA+LDL+DE +W +++MY
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKTESKDEHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 59  LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
           LKT+DKFN+  VSAFVT   ++ +M+HD + E+GIK FFT VY+L+IK+++NPFY+ N+P
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRLIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query: 119 INSTYFDSKVNFLGRKFL 136
           I ST F+ KV FLG+K L
Sbjct: 121 IRSTAFERKVQFLGKKHL 138

Prevents ENO1-mediated transcriptional repression and antagonizes ENO1-mediated cell death. May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Rattus norvegicus (taxid: 10116)

>sp|Q08CN0|TPPC2_DANRE Trafficking protein particle complex subunit 2 OS=Danio rerio GN=trappc2 PE=2 SV=1

 Score =  154 bits (390), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 69/138 (50%), Positives = 105/138 (76%), Gaps = 2/138 (1%)

Query: 1   MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
           M+  +YFVMVG  DNP+++  F    K  + +++++  +FIAHA+LDL+DE +W +++MY
Sbjct: 1   MSGSFYFVMVGHHDNPVFELEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 59  LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
           LKT+DKFN+  VSAFVT   ++F+M+HD + E+GIK FF  VY+L++K+++NPFY++N P
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFNDVYDLYVKFAMNPFYEVNAP 120

Query: 119 INSTYFDSKVNFLGRKFL 136
           I ST F+ KV FLG+K L
Sbjct: 121 IRSTAFERKVQFLGKKHL 138

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Danio rerio (taxid: 7955)

>sp|Q9CQP2|TPPC2_MOUSE Trafficking protein particle complex subunit 2 OS=Mus musculus GN=Trappc2 PE=1 SV=1

 Score =  154 bits (390), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/138 (50%), Positives = 106/138 (76%), Gaps = 2/138 (1%)

Query: 1   MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
           M+  +YFV+VG  DNP+++  F    K  + +++++  +FIAHA+LDL+DE +W +++MY
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 59  LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
           LKT+DKFN+  VSAFVT   ++F+M+HD + E+GIK FFT VY+L+IK+++NPFY+ N+P
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query: 119 INSTYFDSKVNFLGRKFL 136
           I S+ FD KV FLG+K L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

Prevents ENO1-mediated transcriptional repression and antagonizes ENO1-mediated cell death. May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Mus musculus (taxid: 10090)

>sp|Q28IG8|TPPC2_XENTR Trafficking protein particle complex subunit 2 OS=Xenopus tropicalis GN=trappc2 PE=2 SV=1

 Score =  154 bits (388), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 68/138 (49%), Positives = 105/138 (76%), Gaps = 2/138 (1%)

Query: 1   MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
           M+  +YFV+VG  DNP+++  F    K  + +++++  +FIAHA+LDL+DE +W +++MY
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPQGKTESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 59  LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
           LKT+DKFN+  VSAFVT   ++F+M+HD + E+GIK FF   Y+L+IK+++NPFY+IN+P
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFNEAYDLYIKFAMNPFYEINSP 120

Query: 119 INSTYFDSKVNFLGRKFL 136
           + ST FD K+ FLG+K L
Sbjct: 121 LRSTAFDRKIQFLGKKHL 138

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
242014607	140	trafficking protein particle complex pro	0.992	0.985	0.557	1e-39
321468274	140	hypothetical protein DAPPUDRAFT_304934 [	0.992	0.985	0.55	3e-39
242046506	140	mbp-1 interacting protein-2A, putative [	0.992	0.985	0.571	4e-39
156543766	140	PREDICTED: trafficking protein particle	0.992	0.985	0.55	7e-39
346471469	140	hypothetical protein [Amblyomma maculatu	0.992	0.985	0.557	7e-39
193589580	139	PREDICTED: trafficking protein particle	0.985	0.985	0.557	3e-38
332017086	140	Trafficking protein particle complex sub	0.992	0.985	0.535	6e-38
383854207	140	PREDICTED: probable trafficking protein	0.992	0.985	0.542	1e-37
350400109	140	PREDICTED: probable trafficking protein	0.992	0.985	0.542	1e-37
340717937	140	PREDICTED: trafficking protein particle	0.992	0.985	0.542	1e-37

>gi|242014607|ref|XP_002427978.1| trafficking protein particle complex protein, putative [Pediculus humanus corporis] gi|212512477|gb|EEB15240.1| trafficking protein particle complex protein, putative [Pediculus humanus corporis]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/140 (55%), Positives = 105/140 (75%), Gaps = 2/140 (1%)

Query: 1   MANRYYFVMVGREDNPLYQR--GFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
           M+  YYFV+VG  DNP+++    FS KE    ++++  EFIAHA+LDL+DE +W+T++MY
Sbjct: 1   MSGSYYFVIVGHNDNPVFEMEFNFSSKEPKKEDHRHLNEFIAHAALDLVDEHMWKTNNMY 60

Query: 59  LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
           LK++DKFN   VSAFVT + ++F+MVHD+KN++GIK FF  +YE +IKYS+NPFYKI TP
Sbjct: 61  LKSVDKFNQWFVSAFVTASQMRFIMVHDNKNDDGIKNFFMEMYETYIKYSMNPFYKIGTP 120

Query: 119 INSTYFDSKVNFLGRKFLTG 138
           I S  FD K    GRKFLT 
Sbjct: 121 IRSKAFDRKAQLYGRKFLTS 140

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321468274|gb|EFX79260.1| hypothetical protein DAPPUDRAFT_304934 [Daphnia pulex]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 77/140 (55%), Positives = 106/140 (75%), Gaps = 2/140 (1%)

Query: 1   MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
           MA  YYFV+VG  DNPL++  F  + KEA   ++++  +FIAHA+LDL+DE +W T+ +Y
Sbjct: 1   MAGNYYFVIVGHHDNPLFEMEFNPANKEAKKEDHRHLSQFIAHAALDLVDEHMWNTNALY 60

Query: 59  LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
           LK +DKFN+  VSAFV+ + ++FLM+HD KNE+GIK +F  +YE +IK+S+NPFY+INTP
Sbjct: 61  LKIVDKFNEWFVSAFVSASRIRFLMLHDIKNEDGIKNYFMEMYETYIKHSMNPFYEINTP 120

Query: 119 INSTYFDSKVNFLGRKFLTG 138
           I S  F+ K  F GRKFLTG
Sbjct: 121 IRSAAFEKKALFYGRKFLTG 140

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242046506|ref|XP_002399629.1| mbp-1 interacting protein-2A, putative [Ixodes scapularis] gi|215497559|gb|EEC07053.1| mbp-1 interacting protein-2A, putative [Ixodes scapularis] gi|442759491|gb|JAA71904.1| Putative trapp 20 k subunit [Ixodes ricinus]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/140 (57%), Positives = 105/140 (75%), Gaps = 2/140 (1%)

Query: 1   MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
           M+  YYFV+VG  DNP+Y+  F  S K+AN  +++Y  +FIAHA+LDL+DE VW T++MY
Sbjct: 1   MSGTYYFVIVGHFDNPVYEIEFHPSNKQANKEDHRYLSQFIAHAALDLVDECVWTTNNMY 60

Query: 59  LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
           LK +DKFN+  VSAFVT   ++FL++HD KNE+GIK F T +YE ++KY+LNPFY  NTP
Sbjct: 61  LKVVDKFNEWFVSAFVTANRMRFLVLHDVKNEDGIKNFCTEMYEFYVKYALNPFYDHNTP 120

Query: 119 INSTYFDSKVNFLGRKFLTG 138
           I S  FD K  F GRK+LTG
Sbjct: 121 IKSAAFDEKARFYGRKYLTG 140

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156543766|ref|XP_001606185.1| PREDICTED: trafficking protein particle complex subunit 2-like [Nasonia vitripennis]

 Score =  165 bits (417), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 77/140 (55%), Positives = 103/140 (73%), Gaps = 2/140 (1%)

Query: 1   MANRYYFVMVGREDNPLYQRGFSC--KEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
           M + YYF +VG  DNPL++  FS   K+A   ++ +  +FIAHA+LDL+DE VW+T +M+
Sbjct: 1   MTSSYYFAIVGHADNPLFEIEFSNSNKDAKKEDHSHLSQFIAHAALDLVDEHVWKTTNMH 60

Query: 59  LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
           LK +DKFN   VSAFVT T ++F+MVHD KN++GIK FF  +YE +IKYS+NPFYK+NTP
Sbjct: 61  LKVVDKFNQWFVSAFVTATHIRFIMVHDCKNDDGIKNFFNEMYETYIKYSMNPFYKLNTP 120

Query: 119 INSTYFDSKVNFLGRKFLTG 138
           I S  F+ K  F GRK+LT 
Sbjct: 121 IKSVGFEKKAQFYGRKYLTS 140

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346471469|gb|AEO35579.1| hypothetical protein [Amblyomma maculatum]

 Score =  165 bits (417), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 78/140 (55%), Positives = 106/140 (75%), Gaps = 2/140 (1%)

Query: 1   MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
           M+  YYFV+VG  DNP+Y+  F  + K+AN  +++Y  +FIAHA+LDL+DE +W T++MY
Sbjct: 1   MSGSYYFVIVGHFDNPVYEMEFHPANKQANKEDHRYLSQFIAHAALDLVDECMWATNNMY 60

Query: 59  LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
           LK +DKFN+  VSAFVT   ++FL++HD KNE+GIK F T +YE ++KY+LNPFY+ NTP
Sbjct: 61  LKVVDKFNEWFVSAFVTANRMRFLVLHDVKNEDGIKNFCTEMYEFYVKYALNPFYEHNTP 120

Query: 119 INSTYFDSKVNFLGRKFLTG 138
           I S  FD K  F GRK+LTG
Sbjct: 121 IKSATFDEKAKFYGRKYLTG 140

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193589580|ref|XP_001947467.1| PREDICTED: trafficking protein particle complex subunit 2-like [Acyrthosiphon pisum]

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 77/138 (55%), Positives = 102/138 (73%), Gaps = 1/138 (0%)

Query: 1   MANRYYFVMVGREDNPLYQRGF-SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYL 59
           M   YYFV+VG  DNP+++  F S KE    ++ +  +FIAHA+LDL+DE +W++  MYL
Sbjct: 1   MTGFYYFVIVGHGDNPIFEMEFMSSKEVKKEDHSHLNQFIAHAALDLVDELMWKSTSMYL 60

Query: 60  KTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTPI 119
           KT+D+FN   VSAFVT + ++F++VHDSKN+EGIK FFT VYE+FIKY +NPFYK+N PI
Sbjct: 61  KTVDRFNHWTVSAFVTASRMRFIIVHDSKNDEGIKNFFTEVYEMFIKYVMNPFYKLNMPI 120

Query: 120 NSTYFDSKVNFLGRKFLT 137
               FD KV F GRK+L 
Sbjct: 121 KCGSFDKKVQFYGRKYLV 138

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017086|gb|EGI57885.1| Trafficking protein particle complex subunit 2 [Acromyrmex echinatior]

 Score =  161 bits (408), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 75/140 (53%), Positives = 102/140 (72%), Gaps = 2/140 (1%)

Query: 1   MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
           M+  YYF +VG  DNPL++  F  + K+A   ++ +  +FIAHA+LDL+DE  W+T +M+
Sbjct: 1   MSANYYFAIVGHADNPLFEIEFNNAGKDAKKEDHSHLNQFIAHAALDLVDEHTWKTTNMH 60

Query: 59  LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
           LK +DKFN   VSAFVT T ++F+MVHDSKNE+GIK FF  +YE +IKYS+NPFYK+NTP
Sbjct: 61  LKVVDKFNQWFVSAFVTATHIRFVMVHDSKNEDGIKNFFNEMYETYIKYSMNPFYKLNTP 120

Query: 119 INSTYFDSKVNFLGRKFLTG 138
           I S  F+ K    GRK+L+ 
Sbjct: 121 IKSVGFEKKAQLYGRKYLSS 140

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854207|ref|XP_003702613.1| PREDICTED: probable trafficking protein particle complex subunit 2-like [Megachile rotundata]

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/140 (54%), Positives = 101/140 (72%), Gaps = 2/140 (1%)

Query: 1   MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
           M   YYF +VG  DNPL++  F  S K+A   +  +  +FIAHA+LDL+DE  W+T +M+
Sbjct: 1   MTANYYFAIVGHADNPLFEIEFNNSGKDAKKEDYTHLNQFIAHAALDLVDEHTWKTTNMH 60

Query: 59  LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
           LK +DKFN   VSAFVT T ++F+MVHDSKNE+GIK FF  +YE++IKYS+NPFYK+NTP
Sbjct: 61  LKVVDKFNQWFVSAFVTATHIRFVMVHDSKNEDGIKNFFNEMYEMYIKYSMNPFYKLNTP 120

Query: 119 INSTYFDSKVNFLGRKFLTG 138
           I S  F+ K    GRK+L+ 
Sbjct: 121 IKSIGFEKKAQLYGRKYLSS 140

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350400109|ref|XP_003485742.1| PREDICTED: probable trafficking protein particle complex subunit 2-like [Bombus impatiens]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/140 (54%), Positives = 101/140 (72%), Gaps = 2/140 (1%)

Query: 1   MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
           M   YYF +VG  DNPL++  F  S K+A   +  +  +FIAHA+LDL+DE  W+T +M+
Sbjct: 1   MTANYYFAIVGHTDNPLFEIEFNNSGKDAKKEDYTHLNQFIAHAALDLVDEHTWKTTNMH 60

Query: 59  LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
           LK +DKFN   VSAFVT T ++F+MVHDSKNE+GIK FF  +YE++IKYS+NPFYK+NTP
Sbjct: 61  LKVVDKFNQWFVSAFVTATHIRFVMVHDSKNEDGIKNFFNEMYEMYIKYSMNPFYKLNTP 120

Query: 119 INSTYFDSKVNFLGRKFLTG 138
           I S  F+ K    GRK+L+ 
Sbjct: 121 IKSIGFEKKAQLYGRKYLSS 140

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717937|ref|XP_003397430.1| PREDICTED: trafficking protein particle complex subunit 2-like [Bombus terrestris]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/140 (54%), Positives = 101/140 (72%), Gaps = 2/140 (1%)

Query: 1   MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
           M   YYF +VG  DNPL++  F  S K+A   +  +  +FIAHA+LDL+DE  W+T +M+
Sbjct: 1   MTANYYFAIVGHTDNPLFEIEFNNSGKDAKKEDYTHLNQFIAHAALDLVDEHTWKTANMH 60

Query: 59  LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
           LK +DKFN   VSAFVT T ++F+MVHDSKNE+GIK FF  +YE++IKYS+NPFYK+NTP
Sbjct: 61  LKVVDKFNQWFVSAFVTATHIRFVMVHDSKNEDGIKNFFNEMYEMYIKYSMNPFYKLNTP 120

Query: 119 INSTYFDSKVNFLGRKFLTG 138
           I S  F+ K    GRK+L+ 
Sbjct: 121 IKSIGFEKKAQLYGRKYLSS 140

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
UNIPROTKB|P0DI81	140	TRAPPC2 "Trafficking protein p	0.978	0.971	0.514	2.4e-37
UNIPROTKB|P0DI82	140	TRAPPC2P1 "Trafficking protein	0.978	0.971	0.514	2.4e-37
UNIPROTKB|Q3T0F2	140	TRAPPC2 "Trafficking protein p	0.978	0.971	0.507	4.9e-37
UNIPROTKB|E2QV03	140	TRAPPC2 "Trafficking protein p	0.978	0.971	0.507	4.9e-37
UNIPROTKB|F1SRI0	140	TRAPPC2 "Trafficking protein p	0.978	0.971	0.507	4.9e-37
ZFIN|ZDB-GENE-060929-1266	140	trappc2 "trafficking protein p	0.978	0.971	0.5	4.9e-37
RGD|1306925	140	Trappc2 "trafficking protein p	0.978	0.971	0.507	8e-37
RGD|6499350	140	LOC100910318 "trafficking prot	0.978	0.971	0.507	1e-36
FB|FBgn0263604	139	l(3)72Dh "lethal (3) 72Dh" [Dr	0.949	0.949	0.514	2.7e-36
UNIPROTKB|G5EA75	144	TRAPPC2 "Trafficking protein p	0.978	0.944	0.492	1.2e-35

UNIPROTKB|P0DI81 TRAPPC2 "Trafficking protein particle complex subunit 2" [Homo sapiens (taxid:9606)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 71/138 (51%), Positives = 107/138 (77%)

Query:     1 MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
             M+  +YFV+VG  DNP+++  F  + K  + +++++  +FIAHA+LDL+DE +W +++MY
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    59 LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
             LKT+DKFN+  VSAFVT   ++F+M+HD + E+GIK FFT VY+L+IK+S+NPFY+ N+P
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP 120

Query:   119 INSTYFDSKVNFLGRKFL 136
             I S+ FD KV FLG+K L
Sbjct:   121 IRSSAFDRKVQFLGKKHL 138

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0001501 "skeletal system development" evidence=IMP

GO:0044325 "ion channel binding" evidence=IPI

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

UNIPROTKB|P0DI82 TRAPPC2P1 "Trafficking protein particle complex subunit 2 protein TRAPPC2P1" [Homo sapiens (taxid:9606)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 71/138 (51%), Positives = 107/138 (77%)

Query:     1 MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
             M+  +YFV+VG  DNP+++  F  + K  + +++++  +FIAHA+LDL+DE +W +++MY
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    59 LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
             LKT+DKFN+  VSAFVT   ++F+M+HD + E+GIK FFT VY+L+IK+S+NPFY+ N+P
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP 120

Query:   119 INSTYFDSKVNFLGRKFL 136
             I S+ FD KV FLG+K L
Sbjct:   121 IRSSAFDRKVQFLGKKHL 138

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

UNIPROTKB|Q3T0F2 TRAPPC2 "Trafficking protein particle complex subunit 2" [Bos taurus (taxid:9913)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 70/138 (50%), Positives = 107/138 (77%)

Query:     1 MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
             M+  +YFV+VG  DNP+++  F  + K  + +++++  +FIAHA+LDL+DE +W +++MY
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    59 LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
             LKT+DKFN+  VSAFVT   ++F+M+HD + E+GIK FFT VY+L+IK+++NPFY+ N+P
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query:   119 INSTYFDSKVNFLGRKFL 136
             I S+ FD KV FLG+K L
Sbjct:   121 IRSSAFDRKVQFLGKKHL 138

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|E2QV03 TRAPPC2 "Trafficking protein particle complex subunit 2" [Canis lupus familiaris (taxid:9615)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 70/138 (50%), Positives = 107/138 (77%)

Query:     1 MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
             M+  +YFV+VG  DNP+++  F  + K  + +++++  +FIAHA+LDL+DE +W +++MY
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    59 LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
             LKT+DKFN+  VSAFVT   ++F+M+HD + E+GIK FFT VY+L+IK+++NPFY+ N+P
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query:   119 INSTYFDSKVNFLGRKFL 136
             I S+ FD KV FLG+K L
Sbjct:   121 IRSSAFDRKVQFLGKKHL 138

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|F1SRI0 TRAPPC2 "Trafficking protein particle complex subunit 2" [Sus scrofa (taxid:9823)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 70/138 (50%), Positives = 107/138 (77%)

Query:     1 MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
             M+  +YFV+VG  DNP+++  F  + K  + +++++  +FIAHA+LDL+DE +W +++MY
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    59 LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
             LKT+DKFN+  VSAFVT   ++F+M+HD + E+GIK FFT VY+L+IK+++NPFY+ N+P
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query:   119 INSTYFDSKVNFLGRKFL 136
             I S+ FD KV FLG+K L
Sbjct:   121 IRSSAFDRKVQFLGKKHL 138

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

ZFIN|ZDB-GENE-060929-1266 trappc2 "trafficking protein particle complex 2" [Danio rerio (taxid:7955)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 69/138 (50%), Positives = 105/138 (76%)

Query:     1 MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
             M+  +YFVMVG  DNP+++  F    K  + +++++  +FIAHA+LDL+DE +W +++MY
Sbjct:     1 MSGSFYFVMVGHHDNPVFELEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    59 LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
             LKT+DKFN+  VSAFVT   ++F+M+HD + E+GIK FF  VY+L++K+++NPFY++N P
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFNDVYDLYVKFAMNPFYEVNAP 120

Query:   119 INSTYFDSKVNFLGRKFL 136
             I ST F+ KV FLG+K L
Sbjct:   121 IRSTAFERKVQFLGKKHL 138

GO:0005622 "intracellular" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

RGD|1306925 Trappc2 "trafficking protein particle complex 2" [Rattus norvegicus (taxid:10116)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 70/138 (50%), Positives = 106/138 (76%)

Query:     1 MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
             M+  +YFV+VG  DNP+++  F    K  + +++++  +FIAHA+LDL+DE +W +++MY
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    59 LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
             LKT+DKFN+  VSAFVT   ++F+M+HD + E+GIK FFT VY+L+IK+++NPFY+ N+P
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query:   119 INSTYFDSKVNFLGRKFL 136
             I S+ FD KV FLG+K L
Sbjct:   121 IRSSAFDRKVQFLGKKHL 138

GO:0001501 "skeletal system development" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008134 "transcription factor binding" evidence=ISO

GO:0030008 "TRAPP complex" evidence=ISO

GO:0044325 "ion channel binding" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

RGD|6499350 LOC100910318 "trafficking protein particle complex subunit 2-like" [Rattus norvegicus (taxid:10116)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 70/138 (50%), Positives = 106/138 (76%)

Query:     1 MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
             M+  +YFV+VG  DNP+++  F  + K  + +E+++  +FIAHA+LDL+DE +W +++MY
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKTESKDEHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    59 LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
             LKT+DKFN+  VSAFVT   ++ +M+HD + E+GIK FFT VY+L+IK+++NPFY+ N+P
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHMRLIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query:   119 INSTYFDSKVNFLGRKFL 136
             I ST F+ KV FLG+K L
Sbjct:   121 IRSTAFERKVQFLGKKHL 138

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

FB|FBgn0263604 l(3)72Dh "lethal (3) 72Dh" [Drosophila melanogaster (taxid:7227)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 69/134 (51%), Positives = 100/134 (74%)

Query:     5 YYFVMVGREDNPLYQRGFSC--KEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTI 62
             YYFV+VG+ DNP+Y++ FS   KE    ++++  +FIAHA+LDL+DE  W+T +M LK+I
Sbjct:     4 YYFVIVGQNDNPIYEKEFSTVNKELRKEDHRHLTQFIAHAALDLVDEHKWKTANMQLKSI 63

Query:    63 DKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINST 122
             D+FN   VSAF+T + ++F++VHD+KN+EGIK FF  +Y+ +IK S+N FY+INTPI S 
Sbjct:    64 DRFNQWFVSAFITASQIRFIIVHDNKNDEGIKNFFNEMYDTYIKNSMNAFYRINTPIKSP 123

Query:   123 YFDSKVNFLGRKFL 136
              F+ K    GRK+L
Sbjct:   124 MFEKKSEIFGRKYL 137

GO:0003674 "molecular_function" evidence=ND

GO:0005622 "intracellular" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IGI

GO:0033227 "dsRNA transport" evidence=IMP

UNIPROTKB|G5EA75 TRAPPC2 "Trafficking protein particle complex subunit 2" [Sus scrofa (taxid:9823)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 70/142 (49%), Positives = 107/142 (75%)

Query:     1 MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
             M+  +YFV+VG  DNP+++  F  + K  + +++++  +FIAHA+LDL+DE +W +++MY
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    59 LKTIDKFNDMMVSAFVTPTGV----KFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYK 114
             LKT+DKFN+  VSAFVT   +    +F+M+HD + E+GIK FFT VY+L+IK+++NPFY+
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHILIYMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYE 120

Query:   115 INTPINSTYFDSKVNFLGRKFL 136
              N+PI S+ FD KV FLG+K L
Sbjct:   121 PNSPIRSSAFDRKVQFLGKKHL 142

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F1SRI0	TPPC2_PIG	No assigned EC number	0.5072	0.9784	0.9714	yes	N/A
Q5ZKP4	TPPC2_CHICK	No assigned EC number	0.4782	0.9784	0.9714	yes	N/A
Q08CN0	TPPC2_DANRE	No assigned EC number	0.5	0.9784	0.9714	yes	N/A
Q54RV6	TPPC2_DICDI	No assigned EC number	0.4651	0.9136	0.9548	yes	N/A
Q9USZ5	TRS20_SCHPO	No assigned EC number	0.3834	0.9424	0.9632	yes	N/A
E2QV03	TPPC2_CANFA	No assigned EC number	0.5072	0.9784	0.9714	no	N/A
O02173	TPPC2_CAEEL	No assigned EC number	0.4113	0.9856	0.9716	yes	N/A
D3ZVF4	TPPC2_RAT	No assigned EC number	0.5072	0.9784	0.9714	yes	N/A
Q9VUZ1	TPPC2_DROME	No assigned EC number	0.5149	0.9496	0.9496	yes	N/A
P38334	TRS20_YEAST	No assigned EC number	0.3099	0.9496	0.7542	yes	N/A
P0DI82	TPC2B_HUMAN	No assigned EC number	0.5144	0.9784	0.9714	no	N/A
Q3T0F2	TPPC2_BOVIN	No assigned EC number	0.5072	0.9784	0.9714	yes	N/A
Q5RES6	TPPC2_PONAB	No assigned EC number	0.5144	0.9784	0.9714	yes	N/A
P0DI81	TPC2A_HUMAN	No assigned EC number	0.5144	0.9784	0.9714	no	N/A
Q9CQP2	TPPC2_MOUSE	No assigned EC number	0.5072	0.9784	0.9714	yes	N/A
Q28IG8	TPPC2_XENTR	No assigned EC number	0.4927	0.9784	0.9714	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	139
pfam04628	127	pfam04628, Sedlin_N, Sedlin, N-terminal conserved	9e-52
COG5603	136	COG5603, TRS20, Subunit of TRAPP, an ER-Golgi teth	1e-34
pfam04099	135	pfam04099, Sybindin, Sybindin-like family	2e-08

>gnl|CDD|218183 pfam04628, Sedlin_N, Sedlin, N-terminal conserved region

 Score =  160 bits (406), Expect = 9e-52
 Identities = 61/127 (48%), Positives = 92/127 (72%), Gaps = 3/127 (2%)

Query: 10  VGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMM 69
           +G++DNPLY++ FS  E   +  K+  +FIAHASLD+++E  W+T++MYL  +D FND+ 
Sbjct: 2   IGKKDNPLYEQEFS-SEGKTSIPKHLNQFIAHASLDIVEELQWKTNNMYLGLVDSFNDLA 60

Query: 70  VSAFVTPTGVKFLMVHDS--KNEEGIKKFFTSVYELFIKYSLNPFYKINTPINSTYFDSK 127
           VS +VT T +KF+++HDS  + ++ IK+FF  V+EL+IK  +NPFY+ N PI S  FD+K
Sbjct: 61  VSGYVTNTHIKFILLHDSSTERDDDIKQFFREVHELYIKTLMNPFYEPNDPIRSPAFDAK 120

Query: 128 VNFLGRK 134
           V  L +K
Sbjct: 121 VRRLAKK 127

Mutations in this protein are associated with the X-linked spondyloepiphyseal dysplasia tarda syndrome (OMIM:313400). This family represents an N-terminal conserved region. Length = 127

>gnl|CDD|227890 COG5603, TRS20, Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]

 Score =  116 bits (293), Expect = 1e-34
 Identities = 44/133 (33%), Positives = 76/133 (57%), Gaps = 2/133 (1%)

Query: 6   YFVMVGREDNPLYQRGFSC--KEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTID 63
           Y  ++G +DNP+Y+R +    K ++    +   +FI HASLD++    W  +  Y   +D
Sbjct: 4   YLAIIGEKDNPVYEREYDPINKTSDGEYCRLLNQFIIHASLDIVVWLQWSVNTSYFDCLD 63

Query: 64  KFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINSTY 123
            F D+ +SA++ P+G+KFL +H +++ +  + F   V+EL+ K  ++PFY+ + PI S  
Sbjct: 64  SFGDLRISAYIMPSGMKFLFIHQNQSRKNARSFLQEVHELYAKTLMSPFYEPDEPIRSQA 123

Query: 124 FDSKVNFLGRKFL 136
           FD  V    R  L
Sbjct: 124 FDDGVREAARVCL 136

Length = 136

>gnl|CDD|146632 pfam04099, Sybindin, Sybindin-like family

 Score = 49.2 bits (118), Expect = 2e-08
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 73  FVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSL-NPFYKINTPINSTYFDSK 127
             T TG+KF++V D              YEL+  Y L NPFY +  PI    FD K
Sbjct: 72  LQTLTGIKFVLVTDPGTGPNRDSLLRKYYELYSDYVLKNPFYSLEMPIRCELFDEK 127

Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
PF04628	132	Sedlin_N: Sedlin, N-terminal conserved region; Int	100.0
KOG3487|consensus	139		100.0
COG5603	136	TRS20 Subunit of TRAPP, an ER-Golgi tethering comp	100.0
PF04099	142	Sybindin: Sybindin-like family ; InterPro: IPR0072	99.97
KOG3444|consensus	121		99.96
KOG3368|consensus	140		99.96
KOG3369|consensus	199		99.93
COG5122	134	TRS23 Transport protein particle (TRAPP) complex s	99.87
PF01217	141	Clat_adaptor_s: Clathrin adaptor complex small cha	87.7

>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport

Probab=100.00  E-value=8.6e-43  Score=250.35  Aligned_cols=126  Identities=45%  Similarity=0.865  Sum_probs=107.0

Q ss_pred             EEcCCCCeeEEEecCCCCCCC-chhhHHHHHHHHHhHHHHHHhhcc-cccCCceeeeeeCCeeEEEEEcCCCcEEEEEec
Q psy3409           9 MVGREDNPLYQRGFSCKEAND-NENKYYYEFIAHASLDLLDEQVWQ-TDHMYLKTIDKFNDMMVSAFVTPTGVKFLMVHD   86 (139)
Q Consensus         9 Ii~~~~~ply~~~~~~~~~~~-~~~~~~~~f~~~~SLD~i~~~~~~-~~~~yL~~l~~~~~~~v~~y~T~t~~Kfvl~~~   86 (139)
                      |||++|+|||++++++..... +..++++||++|+|||+||+++|. ++++|||.|+++++|+||||+|+||+||||+++
T Consensus         1 IIg~~n~PLy~~~~~~~~~~~~~~~~~l~~~~~h~sLD~iee~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~Kfvl~~~   80 (132)
T PF04628_consen    1 IIGPNNNPLYIRSFPSEKESSSSDARHLYQFIAHSSLDVIEEKLWKSSSDMYLGLLDPFEDYKVYGYVTNTGIKFVLVHD   80 (132)
T ss_dssp             EE-TTS-EEEEEEE--ST-CGHHHHHHHHHHHHHHHHHHHHHCCHCSSSCSEEEEEEEETTEEEEEEETTT--EEEEEEC
T ss_pred             CCCCCCcceEEEecCCCcccccchHHHHHHHHHHHHHHHHHHHHhhcccccccCceehhhhHHHHhhhccCceeEEEEEe
Confidence            899999999999999543211 113455999999999999999999 889999999999999999999999999999999


Q ss_pred             ----cCChHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcChhHHHHHHHHHHh
Q psy3409          87 ----SKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINSTYFDSKVNFLGRK  134 (139)
Q Consensus        87 ----~~~~~~i~~~f~~i~~~Yv~~v~NPf~~~~~~I~s~~F~~~v~~~~~~  134 (139)
                          ..++++||+||++||++|++++|||||+++++|+|+.|+++|+++++|
T Consensus        81 ~~~~~~~d~~ik~fF~~vh~~Y~~~~~NPF~~~~~~I~S~~Fd~~v~~l~~k  132 (132)
T PF04628_consen   81 MSDNSIRDEDIKQFFKEVHELYVKALCNPFYQPGTPIKSPKFDSRVRALAKK  132 (132)
T ss_dssp             GGG-S--HHHHHHHHHHHHHHHHHHHTSTTCGCT-HHHHHHHHHHHHHHHHH
T ss_pred             cccCCcchHHHHHHHHHHHHHHHHHccCCCCCCCCCcCCHHHHHHHHHHhcC
Confidence                458999999999999999999999999999999999999999999986

Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.

>KOG3487|consensus

Probab=100.00  E-value=2.2e-41  Score=237.44  Aligned_cols=135  Identities=48%  Similarity=0.897  Sum_probs=126.5

Q ss_pred             CCceEEEEEEcCCCCeeEEEecCC---CCCCCchhhHHHHHHHHHhHHHHHHhhcccccCCceeeeeeCCeeEEEEEcCC
Q psy3409           1 MANRYYFVMVGREDNPLYQRGFSC---KEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPT   77 (139)
Q Consensus         1 m~~~~~~~Ii~~~~~ply~~~~~~---~~~~~~~~~~~~~f~~~~SLD~i~~~~~~~~~~yL~~l~~~~~~~v~~y~T~t   77 (139)
                      |++  ||+|||++|+|+|+.+|+.   +.+.+++.+++.||++|+|||+|||.+|.++.+|||.+|+++++-|++|+|++
T Consensus         1 m~~--yfaIig~~d~Pvye~e~~~~~~~~~~~~~~~~LN~FI~HAaLdiVde~~W~~snmYLktVDkfne~~VSAyvTas   78 (139)
T KOG3487|consen    1 MTA--YFAIIGHCDNPVYEMEFGCPENSKAARDDNRHLNQFIVHAALDIVDELQWTTSNMYLKTVDKFNELFVSAYVTAS   78 (139)
T ss_pred             Cce--EEEEEecCCCceEEeecCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcceeEEEEEccC
Confidence            555  9999999999999999982   22345677888999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEeccCChHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcChhHHHHHHHHHHhhcc
Q psy3409          78 GVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINSTYFDSKVNFLGRKFLT  137 (139)
Q Consensus        78 ~~Kfvl~~~~~~~~~i~~~f~~i~~~Yv~~v~NPf~~~~~~I~s~~F~~~v~~~~~~~~~  137 (139)
                      ++||++++..+.+++++.||+++|++|++.+|||||.+++||+|+.||.+++-+.++||.
T Consensus        79 ~i~f~mlh~~~~~~~ik~Ffqev~elyik~lmnpFy~~~dpirs~afd~kv~~~~rkhl~  138 (139)
T KOG3487|consen   79 HIRFIMLHINRADDNIKLFFQEVHELYIKTLMNPFYEINDPIRSPAFDHKVRGLARKHLS  138 (139)
T ss_pred             cEEEEEEeeccccccHHHHHHHHHHHHHHHHhCcccccCCccccHHHHHHHHHHHHHHhc
Confidence            999999999988999999999999999999999999999999999999999999999985

>COG5603 TRS20 Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]

Probab=100.00  E-value=2.5e-41  Score=234.35  Aligned_cols=131  Identities=34%  Similarity=0.700  Sum_probs=123.6

Q ss_pred             EEEEEcCCCCeeEEEecCC--CCCCCchhhHHHHHHHHHhHHHHHHhhcccccCCceeeeeeCCeeEEEEEcCCCcEEEE
Q psy3409           6 YFVMVGREDNPLYQRGFSC--KEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFLM   83 (139)
Q Consensus         6 ~~~Ii~~~~~ply~~~~~~--~~~~~~~~~~~~~f~~~~SLD~i~~~~~~~~~~yL~~l~~~~~~~v~~y~T~t~~Kfvl   83 (139)
                      +++|||++|+|+|+++++.  +++..+..+++.||++|+|||++++++|+.+.+|+++++.+++.+++||+||+|+||++
T Consensus         4 y~aIIg~KdnpVYe~e~~~~n~~~d~~~~~~ln~fiihaSlDiv~~lqwsvN~~Y~~~~d~f~~l~IsAYi~pSgmkf~~   83 (136)
T COG5603           4 YLAIIGEKDNPVYEREYDPINKTSDGEYCRLLNQFIIHASLDIVVWLQWSVNTSYFDCLDSFGDLRISAYIMPSGMKFLF   83 (136)
T ss_pred             eEEEEecCCCceeeeeecCcCcccCHHHHHHHhHHhhhhhHHHHHHHHHHhhhHHHHHHHhhCCeEEEEEEccCCceEEE
Confidence            8999999999999999993  34455667888999999999999999999999999999999999999999999999999


Q ss_pred             EeccCChHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcChhHHHHHHHHHHhhc
Q psy3409          84 VHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINSTYFDSKVNFLGRKFL  136 (139)
Q Consensus        84 ~~~~~~~~~i~~~f~~i~~~Yv~~v~NPf~~~~~~I~s~~F~~~v~~~~~~~~  136 (139)
                      +|.....+++|.||+++|++|++.+|||||++++||+|++||.+||+++|++|
T Consensus        84 iH~n~s~~N~rsF~qevHely~ktLmspfy~~~~pirsqafd~~Vr~~ar~~L  136 (136)
T COG5603          84 IHQNQSRKNARSFLQEVHELYAKTLMSPFYEPDEPIRSQAFDDGVREAARVCL  136 (136)
T ss_pred             EeccchhhhHHHHHHHHHHHHHHHhhCcccCCCccccchhhhhhHHHHHHhhC
Confidence            99887788999999999999999999999999999999999999999999986

>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses

Probab=99.97  E-value=1.1e-30  Score=189.80  Aligned_cols=130  Identities=22%  Similarity=0.415  Sum_probs=96.4

Q ss_pred             eEEEEEEcCCCCeeEEEecCCCC----CCCchhhHHHHHHHHHhHHHHHHhhccc-------ccCCceeeeeeCCeeEEE
Q psy3409           4 RYYFVMVGREDNPLYQRGFSCKE----ANDNENKYYYEFIAHASLDLLDEQVWQT-------DHMYLKTIDKFNDMMVSA   72 (139)
Q Consensus         4 ~~~~~Ii~~~~~ply~~~~~~~~----~~~~~~~~~~~f~~~~SLD~i~~~~~~~-------~~~yL~~l~~~~~~~v~~   72 (139)
                      +|+|+||||+|++||.++|....    +...+++.+..+++..||..|..++++.       +...+.. ..++.|++|+
T Consensus         1 IyslyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~-~~T~~yklh~   79 (142)
T PF04099_consen    1 IYSLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFES-FETDTYKLHC   79 (142)
T ss_dssp             EEEEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEE-EEESS-EEEE
T ss_pred             CeEEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEE-EEeCCEEEEE
Confidence            68999999999999999998432    2234556667899999999999999972       2346645 5589999999


Q ss_pred             EEcCCCcEEEEEeccCChHHHHHHHHHHHHHHHHhhh-CCCCCCCCCCcChhHHHHHHHHHHh
Q psy3409          73 FVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSL-NPFYKINTPINSTYFDSKVNFLGRK  134 (139)
Q Consensus        73 y~T~t~~Kfvl~~~~~~~~~i~~~f~~i~~~Yv~~v~-NPf~~~~~~I~s~~F~~~v~~~~~~  134 (139)
                      |+|+||+|||+++|+........+++.+|++|++||+ ||||++++||+|+.||++|++++++
T Consensus        80 ~eT~TGlKFvl~td~~~~~~~~~l~~~~~~lY~dyV~KNPfy~~~~pI~~~lF~~~l~~~~~~  142 (142)
T PF04099_consen   80 FETPTGLKFVLITDPNVPSLRDELLRIYYELYVDYVVKNPFYSLEMPIRCELFDTKLDQYVKS  142 (142)
T ss_dssp             EE-TTS-EEEEEE-TTCCHCHHHHHHHHHHHHHHHHHS-TTS-TTS----HHHHHHHHHHHHC
T ss_pred             EEcCcCcEEEEEecCCCccHHHHHHHHHHHHHHHHHhhCCCCCCCCcEehHHHHHHHHHHHhC
Confidence            9999999999999994435566677888899999999 9999999999999999999999874

Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.

>KOG3444|consensus

Probab=99.96  E-value=1.9e-29  Score=172.68  Aligned_cols=107  Identities=31%  Similarity=0.523  Sum_probs=98.3

Q ss_pred             EEEEEEcCCCCeeEEEecCCCCCCCchhhHHHHHHHHHhHHHHHHhhcc-------cccCCceeeeeeCCeeEEEEEcCC
Q psy3409           5 YYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQ-------TDHMYLKTIDKFNDMMVSAFVTPT   77 (139)
Q Consensus         5 ~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~f~~~~SLD~i~~~~~~-------~~~~yL~~l~~~~~~~v~~y~T~t   77 (139)
                      .|++++|++|+|+|++.+++     .++++++|+..|+|||+|||+...       ++++|||.++++++|++|||+|+|
T Consensus         3 v~~av~g~kn~~lyi~s~t~-----~e~~L~~~y~v~~sLDVieekvn~~gkg~~tsne~fLGLLy~ted~kvYgfvtNT   77 (121)
T KOG3444|consen    3 VCLAVAGPKNEPLYIESITP-----KEKELKLHYQVHLSLDVIEEKVNDPGKGERTSNELFLGLLYPTEDYKVYGFVTNT   77 (121)
T ss_pred             EEEEEEcCCCCccEEEecCc-----HHHHHHhHhhhhhhHHHHHHHhcCcccCccchhhhhhcccccccceeEEEEEecc
Confidence            59999999999999999985     456788999999999999999952       468999999999999999999999


Q ss_pred             CcEEEEEeccC----ChHHHHHHHHHHHHHHHHhhhCCCCCCC
Q psy3409          78 GVKFLMVHDSK----NEEGIKKFFTSVYELFIKYSLNPFYKIN  116 (139)
Q Consensus        78 ~~Kfvl~~~~~----~~~~i~~~f~~i~~~Yv~~v~NPf~~~~  116 (139)
                      .+|||+++|..    ++.+||++||.+|-+|.+..|||||-++
T Consensus        78 kVKFIlvvdssd~avreteiRsv~r~~h~l~td~~~npfy~pg  120 (121)
T KOG3444|consen   78 KVKFILVVDSSDYAVRETEIRSVFRILHLLYTDLSCNPFYLPG  120 (121)
T ss_pred             EEEEEEEEcCCcceehhHHHHHHHHHHHHHHHHheecceeccC
Confidence            99999999864    5889999999999999999999999876

>KOG3368|consensus

Probab=99.96  E-value=8e-28  Score=169.97  Aligned_cols=131  Identities=23%  Similarity=0.376  Sum_probs=114.9

Q ss_pred             CceEEEEEEcCCCCeeEEEecCC--CCCCCchhhHHHHHHHHHhHHHHHHhhcccc-cCCceeeeeeCCeeEEEEEcCCC
Q psy3409           2 ANRYYFVMVGREDNPLYQRGFSC--KEANDNENKYYYEFIAHASLDLLDEQVWQTD-HMYLKTIDKFNDMMVSAFVTPTG   78 (139)
Q Consensus         2 ~~~~~~~Ii~~~~~ply~~~~~~--~~~~~~~~~~~~~f~~~~SLD~i~~~~~~~~-~~yL~~l~~~~~~~v~~y~T~t~   78 (139)
                      +++|.++|++|+|+|||.++|..  .++..++++.++-|++..||..+-+|+++.+ +..+ .-++++.|++|.|+||||
T Consensus         1 Mtiy~~yIFdR~g~Cl~y~EW~r~~~s~~~~eee~KL~yGmlFSlkS~v~Kls~~d~k~~f-~sy~Ts~YklhfyeTptg   79 (140)
T KOG3368|consen    1 MTIYNFYIFDRNGVCLFYREWNRTKQSGIPNEEEAKLMYGMLFSLKSFVSKLSPGDVKDGF-LSYKTSKYKLHFYETPTG   79 (140)
T ss_pred             CeEEEEEEEcCCccEEEehhcccccccCCchhHHHHHHHHHHhhHHHHHHhcCCCCcccCe-eEEeeceeEEEEEEcCCC
Confidence            47899999999999999999983  2333455667888999999999999998763 2233 347799999999999999


Q ss_pred             cEEEEEeccCChHHHHHHHHHHHH-HHHHhhh-CCCCC--CCCCCcChhHHHHHHHHHHh
Q psy3409          79 VKFLMVHDSKNEEGIKKFFTSVYE-LFIKYSL-NPFYK--INTPINSTYFDSKVNFLGRK  134 (139)
Q Consensus        79 ~Kfvl~~~~~~~~~i~~~f~~i~~-~Yv~~v~-NPf~~--~~~~I~s~~F~~~v~~~~~~  134 (139)
                      +||||++|+ +..++|++++.||. +||++|. ||+++  +++||+|+.|.+.+++.++.
T Consensus        80 lk~vl~Tdp-k~~~ir~vLq~IYs~lyVE~Vvknpl~~~~~~~~i~~E~fr~~ld~~vrs  138 (140)
T KOG3368|consen   80 LKFVLNTDP-KAGSIRDVLQYIYSHLYVEYVVKNPLYTYDPGSPIRSELFRKILDRFVRS  138 (140)
T ss_pred             cEEEEecCC-CcccHHHHHHHHHHHHHHHHHHcCcccccCCCCccchHHHHHHHHhhhcc
Confidence            999999999 88899999999995 9999999 99999  99999999999999999873

>KOG3369|consensus

Probab=99.93  E-value=5.1e-25  Score=162.52  Aligned_cols=95  Identities=27%  Similarity=0.533  Sum_probs=85.0

Q ss_pred             HHHHHhHHHHHHhhccccc-CCceeeeeeCCeeEEEEEcCCCcEEEEEeccCChHHHHHHHHHHHHHHHHhhh-CCCCCC
Q psy3409          38 FIAHASLDLLDEQVWQTDH-MYLKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSL-NPFYKI  115 (139)
Q Consensus        38 f~~~~SLD~i~~~~~~~~~-~yL~~l~~~~~~~v~~y~T~t~~Kfvl~~~~~~~~~i~~~f~~i~~~Yv~~v~-NPf~~~  115 (139)
                      -.++.||+.|.+++++-+. +.+..++ ++.+++|+|+|-||+|||+++++ ....+..+|++||++|.+|++ ||||++
T Consensus       101 as~fhsl~aI~~qlsp~~ksSGie~Le-tdtF~l~~~QTlTG~KFVvis~~-~~~~aD~lLrKiYelYsDyvlKNPfYSl  178 (199)
T KOG3369|consen  101 ASSFHSLFAISTQLSPEPKSSGIEVLE-TDTFTLHIFQTLTGTKFVVIAEP-GTQGADSLLRKIYELYSDYVLKNPFYSL  178 (199)
T ss_pred             hhhhcchhheeeccCCCCCCCceEEEE-eccEEEEEEEccCCcEEEEEecC-CchhHHHHHHHHHHHHHHHhhcCCccCc
Confidence            4467889999999987554 6675555 88999999999999999999998 567899999999999999999 999999


Q ss_pred             CCCCcChhHHHHHHHHHHh
Q psy3409         116 NTPINSTYFDSKVNFLGRK  134 (139)
Q Consensus       116 ~~~I~s~~F~~~v~~~~~~  134 (139)
                      ++||+|++||.+++.++..
T Consensus       179 EMPIRc~lFDe~lk~~le~  197 (199)
T KOG3369|consen  179 EMPIRCELFDEKLKFLLES  197 (199)
T ss_pred             ccceeHHHhhHHHHHHHhh
Confidence            9999999999999998865

>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

Probab=99.87  E-value=9.6e-22  Score=136.13  Aligned_cols=127  Identities=24%  Similarity=0.407  Sum_probs=92.5

Q ss_pred             ceEEEEEEcCCCCeeEEEecCCCCCCCchhhHHHHHHHHHhHHH---HHHhhcc-cccCCceeeeeeCCeeEEEEEcCCC
Q psy3409           3 NRYYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDL---LDEQVWQ-TDHMYLKTIDKFNDMMVSAFVTPTG   78 (139)
Q Consensus         3 ~~~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~f~~~~SLD~---i~~~~~~-~~~~yL~~l~~~~~~~v~~y~T~t~   78 (139)
                      ++.-|.|||+.|..||.|+|++.+..-..++++   ++-++|.-   |..+..+ .+...+..++ ++.+.++-|+|-||
T Consensus         2 ave~~~iINksGglifqref~~~et~lnsneyL---iLastlhgV~aI~tq~~p~~gssg~~~l~-~~~f~m~I~qT~TG   77 (134)
T COG5122           2 AVEQFFIINKSGGLIFQREFGEGETELNSNEYL---ILASTLHGVSAILTQTIPLPGSSGRLVLY-FRNFVMTIFQTTTG   77 (134)
T ss_pred             ceeEEEEEecCCcEEEEEeccCCccccCcccEE---EEeechhhhhhhhhhcccCCCCCceEEEE-eccEEEEEEEecCC
Confidence            457789999999999999997432211222222   22233333   3333332 1223443444 78999999999999


Q ss_pred             cEEEEEeccCChHHHHHHHHHHHHHHHHhhh-CCCCCCCCCCcChhHHHHHHHHHHh
Q psy3409          79 VKFLMVHDSKNEEGIKKFFTSVYELFIKYSL-NPFYKINTPINSTYFDSKVNFLGRK  134 (139)
Q Consensus        79 ~Kfvl~~~~~~~~~i~~~f~~i~~~Yv~~v~-NPf~~~~~~I~s~~F~~~v~~~~~~  134 (139)
                      +|||++++.+. .+.+--++++|++|.+||+ ||||++++||+|.+||.++++.+..
T Consensus        78 ~kFV~~~~k~t-~na~~ql~kiY~lYsdYV~knPfys~EMPI~c~lFde~lkrm~e~  133 (134)
T COG5122          78 TKFVFVAEKRT-VNALFQLQKIYSLYSDYVTKNPFYSPEMPIQCSLFDEHLKRMFEG  133 (134)
T ss_pred             cEEEEEecCCc-hhHHHHHHHHHHHHHHHhhcCCCCCcccceehhhhhHHHHHHhcC
Confidence            99999998743 3455558999999999999 9999999999999999999988754

>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=87.70  E-value=7.8  Score=27.34  Aligned_cols=93  Identities=11%  Similarity=0.219  Sum_probs=55.3

Q ss_pred             eEEEEEEcCCCCeeEEEecCCCCCCCchhhHHHHHHHHHhHHHHHHhhcccccCCceeeeeeCCeeEEEEEcCCCcEEEE
Q psy3409           4 RYYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFLM   83 (139)
Q Consensus         4 ~~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~f~~~~SLD~i~~~~~~~~~~yL~~l~~~~~~~v~~y~T~t~~Kfvl   83 (139)
                      +.++.|+|++|++++.|-|...+.  ...    +-....   ....+..+.++.  ..+...+++++ .|.--+++-|++
T Consensus         2 I~~i~i~n~~G~~i~~k~y~~~~~--~~~----~~~~~~---~~~~~~~~~~~~--~~i~~~~~~~~-vy~~~~dl~~~~   69 (141)
T PF01217_consen    2 IKAILILNSQGKRILSKYYRDVSE--EER----QKLFEK---FIKKKSSRNSKQ--SPIFEHDNYRI-VYKRYSDLYFVV   69 (141)
T ss_dssp             EEEEEEEETTSEEEEEEESSTSTS--HHH----HHHHHH---HHHHHHTSSSSS--TSEEEETTEEE-EEEEETTEEEEE
T ss_pred             EEEEEEEcCCCCEEEehhcCCccH--HHH----HHHHHH---HHHHHHhccccc--ceeeeccccee-eeEeeccEEEEE
Confidence            568999999999999999963211  111    111111   011112222211  23344566554 777888999999


Q ss_pred             Eecc-CChHHHHHHHHHHHHHHHHhh
Q psy3409          84 VHDS-KNEEGIKKFFTSVYELFIKYS  108 (139)
Q Consensus        84 ~~~~-~~~~~i~~~f~~i~~~Yv~~v  108 (139)
                      +++. .++-.+-.+++.+.+++-++.
T Consensus        70 v~~~~eNel~~~e~l~~~v~~l~~~~   95 (141)
T PF01217_consen   70 VGDENENELLLLEFLHRLVEVLDDYF   95 (141)
T ss_dssp             EESSTSBHHHHHHHHHHHHHHHHHHH
T ss_pred             EeecccchHHHHHHHHHhhhhhhhhh
Confidence            9986 244455777777777776664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
2j3w_A	142	The Crystal Structure Of The Bet3-Trs31-Sedlin Comp		1e-38
1h3q_A	140	Crystal Sturcture Of Sedl At 2.4 Angstroms Resoluti		1e-38
2j3t_D	219	The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23		1e-04
2zmv_A	227	Crystal Structure Of Synbindin Length = 227		1e-04

>pdb|2J3W|A Chain A, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex. Length = 142

Iteration: 1
 Score =  154 bits (390), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 70/138 (50%), Positives = 106/138 (76%), Gaps = 2/138 (1%)
Query: 1   MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
           M+  +YFV+VG  DNP+++  F    K  + +++++  +FIAHA+LDL+DE +W +++MY
Sbjct: 3   MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 62
Query: 59  LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
           LKT+DKFN+  VSAFVT   ++F+M+HD + E+GIK FFT VY+L+IK+++NPFY+ N+P
Sbjct: 63  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 122
Query: 119 INSTYFDSKVNFLGRKFL 136
           I S+ FD KV FLG+K L
Sbjct: 123 IRSSAFDRKVQFLGKKHL 140

>pdb|1H3Q|A Chain A, Crystal Sturcture Of Sedl At 2.4 Angstroms Resolution Length = 140

Iteration: 1
 Score =  154 bits (390), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 70/138 (50%), Positives = 106/138 (76%), Gaps = 2/138 (1%)
Query: 1   MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
           M+  +YFV+VG  DNP+++  F    K  + +++++  +FIAHA+LDL+DE +W +++MY
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 59  LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
           LKT+DKFN+  VSAFVT   ++F+M+HD + E+GIK FFT VY+L+IK+++NPFY+ N+P
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120
Query: 119 INSTYFDSKVNFLGRKFL 136
           I S+ FD KV FLG+K L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

>pdb|2J3T|D Chain D, The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23 Complex Length = 219

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 72  AFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSL-NPFYKINTPINSTYFDSKVNF 130
            + T TG+KF+++ D + + GI      +YE++  ++L NPFY +  PI    FD  +  
Sbjct: 146 CYQTLTGIKFVVLADPR-QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKL 204

>pdb|2ZMV|A Chain A, Crystal Structure Of Synbindin Length = 227

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 72  AFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSL-NPFYKINTPINSTYFDSKVNF 130
            + T TG+KF+++ D + + GI      +YE++  ++L NPFY +  PI    FD  +  
Sbjct: 146 CYQTLTGIKFVVLADPR-QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKL 204

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
2j3w_A	142	Sedlin, trafficking protein particle complex prote	9e-50
3pr6_A	162	Trapp-associated protein TCA17; longin fold, vesic	1e-16
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	3e-13
3cue_A	219	Transport protein particle 23 kDa subunit; membran	4e-09
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	1e-07
3cue_C	159	Transport protein particle 18 kDa subunit; membran	6e-04

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A Length = 142

 Score =  154 bits (391), Expect = 9e-50
 Identities = 70/138 (50%), Positives = 106/138 (76%), Gaps = 2/138 (1%)

Query: 1   MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
           M+  +YFV+VG  DNP+++  F    K  + +++++  +FIAHA+LDL+DE +W +++MY
Sbjct: 3   MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 62

Query: 59  LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
           LKT+DKFN+  VSAFVT   ++F+M+HD + E+GIK FFT VY+L+IK+++NPFY+ N+P
Sbjct: 63  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 122

Query: 119 INSTYFDSKVNFLGRKFL 136
           I S+ FD KV FLG+K L
Sbjct: 123 IRSSAFDRKVQFLGKKHL 140

>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae} Length = 162

 Score = 70.8 bits (173), Expect = 1e-16
 Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 18/140 (12%)

Query: 6   YFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQV--WQTDHMYLKTID 63
           +  ++   D P+     +  E   N+   Y   +++ SLD  +  +  W +         
Sbjct: 12  FVSLIDESDKPILIYVPNEAENEMNDVLKYN-VLSNISLDYFESALVEWHSLDSKPLLKS 70

Query: 64  KFNDMMVSAF---VTPTGVKFLMVHDSKN-------EEGIKKFFTSVYELFIKYSLNPFY 113
            F    VS F   +  TG+K ++  + K+        E I + F +V +++I+   NP  
Sbjct: 71  IFQLEGVSVFAMLIKQTGLKIVIGFEQKSLSGADDEFEAINQIFETVRKIYIRVKCNPLL 130

Query: 114 KIN-----TPINSTYFDSKV 128
                          FD   
Sbjct: 131 VSGDEKSIIKSLERKFDELF 150

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A Length = 219

 Score = 63.2 bits (153), Expect = 3e-13
 Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 4/131 (3%)

Query: 2   ANRYYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKT 61
             +     +G   N      F       NE         H+   +  +   +     ++ 
Sbjct: 78  DGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMF-HSLFAIGSQLSPEQGSSGIEM 136

Query: 62  IDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSL-NPFYKINTPIN 120
           + + +   +  + T TG+KF+++ D   + GI      +YE++  ++L NPFY +  PI 
Sbjct: 137 L-ETDTFKLHCYQTLTGIKFVVLAD-PRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIR 194

Query: 121 STYFDSKVNFL 131
              FD  +   
Sbjct: 195 CELFDQNLKLA 205

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 219

 Score = 52.0 bits (123), Expect = 4e-09
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 24/90 (26%)

Query: 70  VSAFVTPTGVKFLMVHDSK-----------------------NEEGIKKFFTSVYELFIK 106
           +  + T TG+KF+ +  S                          +    F   VY L+  
Sbjct: 129 MFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSD 188

Query: 107 YSL-NPFYKINTPINSTYFDSKVNFLGRKF 135
           Y + +P Y +  PI S  FD KV  +    
Sbjct: 189 YVMKDPSYSMEMPIRSNLFDEKVKKMVENL 218

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus} Length = 145

 Score = 46.4 bits (110), Expect = 1e-07
 Identities = 20/133 (15%), Positives = 52/133 (39%), Gaps = 13/133 (9%)

Query: 5   YYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIA------HASLDLLDEQVWQTDHMY 58
           +   +  R    L+   +  K+      +  Y+ +        + +  +     +   + 
Sbjct: 4   HNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLS 63

Query: 59  LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYE-LFIKYSL-NPFYKIN 116
            +T  ++    +  + TPTG+K +M  D      I+     +Y  L++++ + NP   + 
Sbjct: 64  FQT-SRYK---LHYYETPTGIKVVMNTD-LGVGPIRDVLHHIYSALYVEFVVKNPLCPLG 118

Query: 117 TPINSTYFDSKVN 129
             + S  F S+++
Sbjct: 119 QTVQSELFRSRLD 131

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 159

 Score = 36.8 bits (85), Expect = 6e-04
 Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 73  FVTPTGVKFLMVHDSKNEEGIKKFFTSVY-ELFIKYSL-NPFYKINTPINSTYFDSK 127
           + T +G+ F+++ D   ++   +    +Y  +++KY   N     +   N      +
Sbjct: 80  YCTASGLWFVLLSD-FKQQSYTQVLQYIYSHIYVKYVSNNLLSPYDFAENENEMRGQ 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
2j3w_A	142	Sedlin, trafficking protein particle complex prote	100.0
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	100.0
3cue_C	159	Transport protein particle 18 kDa subunit; membran	100.0
3pr6_A	162	Trapp-associated protein TCA17; longin fold, vesic	100.0
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	100.0
3cue_A	219	Transport protein particle 23 kDa subunit; membran	100.0
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	93.07
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	92.6
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	89.84
4b93_A	189	Vesicle-associated membrane protein 7; endocytosis	89.59
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	83.54
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	81.61

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A

Probab=100.00  E-value=3.6e-46  Score=269.89  Aligned_cols=138  Identities=50%  Similarity=0.973  Sum_probs=127.1

Q ss_pred             CCceEEEEEEcCCCCeeEEEecCCCCC--CCchhhHHHHHHHHHhHHHHHHhhcccccCCceeeeeeCCeeEEEEEcCCC
Q psy3409           1 MANRYYFVMVGREDNPLYQRGFSCKEA--NDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTG   78 (139)
Q Consensus         1 m~~~~~~~Ii~~~~~ply~~~~~~~~~--~~~~~~~~~~f~~~~SLD~i~~~~~~~~~~yL~~l~~~~~~~v~~y~T~t~   78 (139)
                      |+++++|+||||+|+|||+++|++..+  .+++.++..||++|+|||+++++.|+++++|||.++++++|++|||+|+||
T Consensus         3 M~~i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg   82 (142)
T 2j3w_A            3 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH   82 (142)
T ss_dssp             CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTC
T ss_pred             cceEEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCC
Confidence            788999999999999999999985322  123556777899999999999999998899999999999999999999999


Q ss_pred             cEEEEEeccCChHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcChhHHHHHHHHHHhhccC
Q psy3409          79 VKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINSTYFDSKVNFLGRKFLTG  138 (139)
Q Consensus        79 ~Kfvl~~~~~~~~~i~~~f~~i~~~Yv~~v~NPf~~~~~~I~s~~F~~~v~~~~~~~~~~  138 (139)
                      +|||+++++++++++|++|++||++|+++++||||++++||+|+.||++|++++++|++|
T Consensus        83 ~Kfvl~~d~~~~~~i~~~~~~iy~~Y~~~v~NPfy~~~~pI~s~~Fd~~v~~~~~~~l~~  142 (142)
T 2j3w_A           83 MRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKHLLS  142 (142)
T ss_dssp             CEEEEEESSCCHHHHHHHHHHHHHHHHHHHHSTTCCTTCCCCCHHHHHHHHHHHHHHTCC
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHHhccC
Confidence            999999998569999999999999999999999999999999999999999999999864

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}

Probab=100.00  E-value=1e-38  Score=231.61  Aligned_cols=132  Identities=17%  Similarity=0.262  Sum_probs=113.3

Q ss_pred             ceEEEEEEcCCCCeeEEEecCCCC--CCCchhhHHHHHHHHHhHHHHHHhhccc-ccCCceeeeeeCCeeEEEEEcCCCc
Q psy3409           3 NRYYFVMVGREDNPLYQRGFSCKE--ANDNENKYYYEFIAHASLDLLDEQVWQT-DHMYLKTIDKFNDMMVSAFVTPTGV   79 (139)
Q Consensus         3 ~~~~~~Ii~~~~~ply~~~~~~~~--~~~~~~~~~~~f~~~~SLD~i~~~~~~~-~~~yL~~l~~~~~~~v~~y~T~t~~   79 (139)
                      ++++|+||||+|+|||+++|....  +...+++.++.++++.||+.|.+++++. +..+++++ ++++|++|+|+|+||+
T Consensus         2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~-~t~~ykl~~~~T~Tgi   80 (145)
T 2j3t_C            2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSF-QTSRYKLHYYETPTGI   80 (145)
T ss_dssp             CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEE-ECSSCEEEEEECTTSC
T ss_pred             eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEE-ecCCEEEEEEEcCCCC
Confidence            589999999999999999997422  1121455566677777788888887654 56788776 7999999999999999


Q ss_pred             EEEEEeccCChHHHHHHHHHHH-HHHHHhhh-CCCCCCCCCCcChhHHHHHHHHHHhhc
Q psy3409          80 KFLMVHDSKNEEGIKKFFTSVY-ELFIKYSL-NPFYKINTPINSTYFDSKVNFLGRKFL  136 (139)
Q Consensus        80 Kfvl~~~~~~~~~i~~~f~~i~-~~Yv~~v~-NPf~~~~~~I~s~~F~~~v~~~~~~~~  136 (139)
                      ||||++|+ +++++|++|++|| ++|+++++ ||||++++||+|+.||++|+++++++-
T Consensus        81 KFvl~td~-~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~Fd~~v~~~~~~~~  138 (145)
T 2j3t_C           81 KVVMNTDL-GVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSLP  138 (145)
T ss_dssp             EEEEEECT-TCCCCHHHHHHHHHTTHHHHTTTCTTSCTTSCCCCHHHHHHHHHHHTTST
T ss_pred             EEEEEecC-CcchHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHhCc
Confidence            99999998 7889999999999 89999999 999999999999999999999999864

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-35  Score=215.88  Aligned_cols=133  Identities=17%  Similarity=0.275  Sum_probs=111.9

Q ss_pred             CceEEEEEEcCCCCeeEEEecCCC--------CCCCchhhHHHHHHHHHhHHHHHHhhcccc-cCCceeeeeeCCeeEEE
Q psy3409           2 ANRYYFVMVGREDNPLYQRGFSCK--------EANDNENKYYYEFIAHASLDLLDEQVWQTD-HMYLKTIDKFNDMMVSA   72 (139)
Q Consensus         2 ~~~~~~~Ii~~~~~ply~~~~~~~--------~~~~~~~~~~~~f~~~~SLD~i~~~~~~~~-~~yL~~l~~~~~~~v~~   72 (139)
                      +++|||+||||+|+|||.++|...        +....+++.++.++++.||+.|.+++++.+ ...+ ...++++|++|+
T Consensus         1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f-~~~~T~~ykl~~   79 (159)
T 3cue_C            1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDI-RSISTGKYRVHT   79 (159)
T ss_dssp             CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCE-EEEECSSCBEEE
T ss_pred             CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCe-EEEeeCCEEEEE
Confidence            357999999999999999999631        012235567788999999999999998654 2334 456689999999


Q ss_pred             EEcCCCcEEEEEeccCChHHHHHHHHHHHH-HHHHhhh-CC-----CCCCC--------CCCcChhHHHHHHHHHHhhc
Q psy3409          73 FVTPTGVKFLMVHDSKNEEGIKKFFTSVYE-LFIKYSL-NP-----FYKIN--------TPINSTYFDSKVNFLGRKFL  136 (139)
Q Consensus        73 y~T~t~~Kfvl~~~~~~~~~i~~~f~~i~~-~Yv~~v~-NP-----f~~~~--------~~I~s~~F~~~v~~~~~~~~  136 (139)
                      |+|+||+||||++|. ++.++|.+|++||+ +|++||+ ||     ||+++        +||+|++||++|+++++++.
T Consensus        80 ~eT~TgiKFvl~td~-~~~~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~~~~~~~~~~~pI~s~~Fd~~l~~~~~~~~  157 (159)
T 3cue_C           80 YCTASGLWFVLLSDF-KQQSYTQVLQYIYSHIYVKYVSNNLLSPYDFAENENEMRGQGTRKITNRNFISVLESFLAPMV  157 (159)
T ss_dssp             ECCSSCCEEEEECCS-SSSCTHHHHHHHHHHHHHHHHHSCTTSCCSCCCSCTTTTTSCCCCCCCHHHHHHHHHHTSCC-
T ss_pred             EEeCCCCEEEEEeCC-CcchHHHHHHHHHHHHHHHHHHhCCCccccccccccccccccCcCcccHHHHHHHHHHHHhcc
Confidence            999999999999999 78899999999996 9999887 99     99999        99999999999999998764

>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-33  Score=207.17  Aligned_cols=111  Identities=22%  Similarity=0.449  Sum_probs=95.7

Q ss_pred             EEEEEcCCCCeeEEEecCCCCCCCchhhHHHHHHHHHhHHHHHHhh--ccccc--CCceeeeeeCCeeEEEEE-cCCCcE
Q psy3409           6 YFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQV--WQTDH--MYLKTIDKFNDMMVSAFV-TPTGVK   80 (139)
Q Consensus         6 ~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~f~~~~SLD~i~~~~--~~~~~--~yL~~l~~~~~~~v~~y~-T~t~~K   80 (139)
                      +++||||+|+|||++.+++.+. +.+..+++||++|+|||+||+++  |.+++  +|||.++++++++||||+ |+||+|
T Consensus        12 FVaIIg~~n~PLyI~~~~~~~~-~~~~~Lk~~fi~hsSLDi~Ee~~~~~~s~~~~~~LglL~~~e~~~VYGy~iTnt~vK   90 (162)
T 3pr6_A           12 FVSLIDESDKPILIYVPNEAEN-EMNDVLKYNVLSNISLDYFESALVEWHSLDSKPLLKSIFQLEGVSVFAMLIKQTGLK   90 (162)
T ss_dssp             EEEEECTTSCEEEEECCC--------CHHHHHHHHHHHHHHHHCTTCCCCCSSSSCCCEEEEEETTEEEEEEECTTTCCE
T ss_pred             EEEEECCCCceeEEEeCCCccc-cccchhHHHHHHHHHHHHHhhhhhhccccccccccceEeecCCeEEEEEEEcCCceE
Confidence            7889999999999999985322 23456889999999999999999  76654  789999999999999997 999999


Q ss_pred             EEEEeccC-----Ch--HHHHHHHHHHHHHHHHhhhCCCCCCCC
Q psy3409          81 FLMVHDSK-----NE--EGIKKFFTSVYELFIKYSLNPFYKINT  117 (139)
Q Consensus        81 fvl~~~~~-----~~--~~i~~~f~~i~~~Yv~~v~NPf~~~~~  117 (139)
                      ||++++..     +|  ++||++|+++|++|++++|||||.+++
T Consensus        91 fVl~~d~~~~~~~~D~~~~Ik~~F~~vh~~Yvk~l~NPFy~~~d  134 (162)
T 3pr6_A           91 IVIGFEQKSLSGADDEFEAINQIFETVRKIYIRVKCNPLLVSGD  134 (162)
T ss_dssp             EEEEEEGGGCCCCHHHHHHHHHHHHHHHHHHHHHHTCTTGGGSC
T ss_pred             EEEEEccCCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence            99999863     36  799999999999999999999999984

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A

Probab=100.00  E-value=3.4e-33  Score=213.67  Aligned_cols=126  Identities=21%  Similarity=0.355  Sum_probs=108.7

Q ss_pred             EEEEcCCCCeeEEEecCCCCCCCchhhHHHHHHHHHhHHHHHHhhcccc-cCCceeeeeeCCeeEEEEEcCCCcEEEEEe
Q psy3409           7 FVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTD-HMYLKTIDKFNDMMVSAFVTPTGVKFLMVH   85 (139)
Q Consensus         7 ~~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~f~~~~SLD~i~~~~~~~~-~~yL~~l~~~~~~~v~~y~T~t~~Kfvl~~   85 (139)
                      ..|+|++|+|||++.+..+.  +++..+.+..++| |||+|++++|+.+ ...+.+ ..+++|++|||+|+||+||||++
T Consensus        84 ~~iigk~N~PLyir~f~~~l--~sn~~L~lag~lh-SLd~i~~klsp~~~s~g~~~-~~T~~ykl~~y~T~TgiKFVLlt  159 (219)
T 2j3t_D           84 EYLGNPANYPVSIRFGRPRL--TSNEKLMLASMFH-SLFAIGSQLSPEQGSSGIEM-LETDTFKLHCYQTLTGIKFVVLA  159 (219)
T ss_dssp             HHTTCGGGCSEEEEEECCCC--CHHHHHHHHHHHH-HHHHHHHHTCSSSSCCSCSE-EEESSCEEEEEECTTSCEEEEEE
T ss_pred             eeeecCCCCceEEEecCCCC--ChhHHHHHHHHHH-HHHHHHHHhCCCCCCCCeeE-EecCceEEEEEEcCCCCEEEEEe
Confidence            35789999999999998531  2333444445667 9999999999854 456745 46899999999999999999999


Q ss_pred             ccCChHHHHHHHHHHHHHHHHhhh-CCCCCCCCCCcChhHHHHHHHHHHhhcc
Q psy3409          86 DSKNEEGIKKFFTSVYELFIKYSL-NPFYKINTPINSTYFDSKVNFLGRKFLT  137 (139)
Q Consensus        86 ~~~~~~~i~~~f~~i~~~Yv~~v~-NPf~~~~~~I~s~~F~~~v~~~~~~~~~  137 (139)
                      |+ +++++|++|++||++|+++++ ||||++++||+|+.||++|+++++++..
T Consensus       160 d~-~~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~s~~Fd~~v~~l~~~~~~  211 (219)
T 2j3t_D          160 DP-RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVAEK  211 (219)
T ss_dssp             CT-TCCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCCCHHHHHHHHHHHHHHTT
T ss_pred             cC-CchHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHHHHHHHHHHHHhhc
Confidence            99 788999999999999999988 9999999999999999999999999877

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-31  Score=204.84  Aligned_cols=133  Identities=23%  Similarity=0.343  Sum_probs=111.8

Q ss_pred             CceEEEEEEcCCCCeeEEEecCCCCCCCchhhHHHHHHHHHhHHHHHHhhcccc--------------------------
Q psy3409           2 ANRYYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTD--------------------------   55 (139)
Q Consensus         2 ~~~~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~f~~~~SLD~i~~~~~~~~--------------------------   55 (139)
                      +++++|+||||+|.+||.|+|.........++.+..+++..+|..|..++.+..                          
T Consensus         1 M~i~sl~IiNk~GglIY~r~~~~~~~~l~snd~l~lag~lhsv~ai~~~ltP~~~~~~~~~~~~~~~~~~~~~g~~~~~~   80 (219)
T 3cue_A            1 MAIETILVINKSGGLIYQRNFTNDEQKLNSNEYLILASTLHGVFAIASQLTPKALQLTQQTNIENTIPYIPYVGMSSNRS   80 (219)
T ss_dssp             -CEEEEEEECTTSCEEEEEECSSCCCCSCHHHHHHHHHHHHHHHHHHHHTCCSCC-----------CCCCCSCCC-----
T ss_pred             CeeEEEEEEeCCCCEEeehhhccCcCCCCcchhhhhhhhhHHHHHHHhhcCCCccccccccccccccccccccccccccc
Confidence            358999999999999999999843222345566677888889999999997532                          


Q ss_pred             -----------------------------------cCCceeeeeeCCeeEEEEEcCCCcEEEEEeccCC-h---------
Q psy3409          56 -----------------------------------HMYLKTIDKFNDMMVSAFVTPTGVKFLMVHDSKN-E---------   90 (139)
Q Consensus        56 -----------------------------------~~yL~~l~~~~~~~v~~y~T~t~~Kfvl~~~~~~-~---------   90 (139)
                                                         +..| ....+++|++|||+|+||+||||++++.. +         
T Consensus        81 ~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~-~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~  159 (219)
T 3cue_A           81 DTRNGGGNNNKHTNNEKLGSFKGDDFFKEPFTNWNKSGL-RQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTD  159 (219)
T ss_dssp             -----------------------CCSCCSCCCCCCSSSC-CEEEESSCEEEEEECTTSCEEEEEESSCC-----------
T ss_pred             ccccccccccccccccccccccccccccccccccCCCce-EEEEeCCEEEEEEEcCCCCEEEEEecCCCccccccccccc
Confidence                                               1234 33558899999999999999999999843 2         


Q ss_pred             -------------HHHHHHHHHHHHHHHHhhh-CCCCCCCCCCcChhHHHHHHHHHHhh
Q psy3409          91 -------------EGIKKFFTSVYELFIKYSL-NPFYKINTPINSTYFDSKVNFLGRKF  135 (139)
Q Consensus        91 -------------~~i~~~f~~i~~~Yv~~v~-NPf~~~~~~I~s~~F~~~v~~~~~~~  135 (139)
                                   +++|++|++||++|+++|| ||||.+++||+|+.||.+|+++++++
T Consensus       160 ~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~~~~pI~S~~Fd~~V~~~~~~~  218 (219)
T 3cue_A          160 KPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENL  218 (219)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHHHHHHSCTTCCTTSCCCCHHHHHHHHHHHHHH
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHhc
Confidence                         8999999999999999999 99999999999999999999999976

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}

Probab=93.07  E-value=1.9  Score=31.70  Aligned_cols=103  Identities=13%  Similarity=0.139  Sum_probs=62.7

Q ss_pred             CCceEEEEEEcCCCC-eeEEEecCCCCCCCchhhH-HHHHHHHHhHHHHHHhhcccccCCceeeeeeCCeeEEEEEcCCC
Q psy3409           1 MANRYYFVMVGREDN-PLYQRGFSCKEANDNENKY-YYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTG   78 (139)
Q Consensus         1 m~~~~~~~Ii~~~~~-ply~~~~~~~~~~~~~~~~-~~~f~~~~SLD~i~~~~~~~~~~yL~~l~~~~~~~v~~y~T~t~   78 (139)
                      |+-+|++.|+-+++. |+....-..-++..-=++- .-+|+...| ..+-+++.+.    =+.....++|.+|.|....|
T Consensus         1 ~mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~-r~il~r~~~~----~r~s~~~~~y~fH~y~~~~g   75 (199)
T 3kyq_A            1 LMKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTS-QLIVERSAKG----SRASVKEQEYLCHVYVRSDS   75 (199)
T ss_dssp             CCCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHH-HHHHHTSCTT----EEEEEECSSEEEEEEECTTS
T ss_pred             CceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHH-HHHHhcCCCC----CeEEEEeCCEEEEEEEecCC
Confidence            888999999976544 4444332222221111121 124555443 3333444332    24556678999999999999


Q ss_pred             cEEEEEeccC-ChHHHHHHHHHHHHHHHHhh
Q psy3409          79 VKFLMVHDSK-NEEGIKKFFTSVYELFIKYS  108 (139)
Q Consensus        79 ~Kfvl~~~~~-~~~~i~~~f~~i~~~Yv~~v  108 (139)
                      +-++.++|.. ...-.-.++++|.+.|....
T Consensus        76 l~yl~itd~~yp~r~AF~fL~ei~~eF~~~~  106 (199)
T 3kyq_A           76 LAGVVIADSEYPSRVAFTLLEKVLDEFSKQV  106 (199)
T ss_dssp             EEEEEEEETTSCHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHhc
Confidence            9999999873 23344677888887776654

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A

Probab=92.60  E-value=1.6  Score=31.77  Aligned_cols=76  Identities=11%  Similarity=0.193  Sum_probs=53.4

Q ss_pred             eeeeeeCCeeEEEEEcCCCcEEEEEeccC-ChHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcChhHHHHHHHHHHhhc
Q psy3409          60 KTIDKFNDMMVSAFVTPTGVKFLMVHDSK-NEEGIKKFFTSVYELFIKYSLNPFYKINTPINSTYFDSKVNFLGRKFL  136 (139)
Q Consensus        60 ~~l~~~~~~~v~~y~T~t~~Kfvl~~~~~-~~~~i~~~f~~i~~~Yv~~v~NPf~~~~~~I~s~~F~~~v~~~~~~~~  136 (139)
                      +.....++|.+| |....|+-+++++|.. ...-.-.|+++|.+.|....-+-.-....|..-..|+..+.++.+.|-
T Consensus        52 r~s~~~~~y~fh-y~~~~gl~~l~i~d~~yp~r~af~fL~~i~~~F~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~  128 (196)
T 2nut_C           52 RCTLEAGAMTFH-YIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYI  128 (196)
T ss_dssp             EEEEEETTEEEE-EEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHTTTTTTCCSTTTTGGGHHHHHHHHTTTS
T ss_pred             eEEEEeCCEEEE-EEeCCCeEEEEEEcCCcchHHHHHHHHHHHHHHHHhccchhccccCCCchHHHHHHHHHHHHHhc
Confidence            344557899888 8889999999999873 233456788888877776543322222335555689999999888774

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A

Probab=89.84  E-value=0.27  Score=37.15  Aligned_cols=23  Identities=22%  Similarity=0.288  Sum_probs=19.9

Q ss_pred             CCceEEEEEEcCCCCeeEEEecCC
Q psy3409           1 MANRYYFVMVGREDNPLYQRGFSC   24 (139)
Q Consensus         1 m~~~~~~~Ii~~~~~ply~~~~~~   24 (139)
                      |+ +|++.||+|.|++||.++|..
T Consensus         1 m~-iy~~yi~~~~~~liy~~~~~~   23 (219)
T 2j3t_D            1 MA-IFSVYVVNKAGGLIYQLDSYA   23 (219)
T ss_dssp             -C-EEEEEEECTTSCEEEEEECC-
T ss_pred             Ce-EEEEEEEecCCceEEecccCC
Confidence            44 899999999999999999983

>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A

Probab=89.59  E-value=4.5  Score=29.25  Aligned_cols=76  Identities=11%  Similarity=0.090  Sum_probs=50.6

Q ss_pred             eeeeeeCCeeEEEEEcCCCcEEEEEeccC-ChHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcChhHHHHHHHHHHhhc
Q psy3409          60 KTIDKFNDMMVSAFVTPTGVKFLMVHDSK-NEEGIKKFFTSVYELFIKYSLNPFYKINTPINSTYFDSKVNFLGRKFL  136 (139)
Q Consensus        60 ~~l~~~~~~~v~~y~T~t~~Kfvl~~~~~-~~~~i~~~f~~i~~~Yv~~v~NPf~~~~~~I~s~~F~~~v~~~~~~~~  136 (139)
                      +..+..++|.+| |....|+-+++++|.. ...-.-.||.+|.+.|....-+.-......-.+..|+..+.++.+.|-
T Consensus        43 k~s~~~~~y~fH-yl~~~gl~yl~i~d~~yp~r~af~fL~~i~~eF~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~  119 (189)
T 4b93_A           43 KLTYSHGNYLFH-YICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHS  119 (189)
T ss_dssp             EEEEEETTEEEE-EEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCEEEE-EEEeCCeEEEEEEcCccCHHHHHHHHHHHHHHHHhhccccccccCCccccchhhHHHHHHHHhhh
Confidence            455677899999 8888999999999973 233456678888877765443221111112223568888888888774

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=83.54  E-value=9.3  Score=26.71  Aligned_cols=95  Identities=13%  Similarity=0.179  Sum_probs=53.9

Q ss_pred             eEEEEEEcCCCCeeEEEecCCCCCCCchhhHHHHHHHHHhHHHHHHhhcccccCCceeeeeeCCeeEEEEEcCCCcEEEE
Q psy3409           4 RYYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFLM   83 (139)
Q Consensus         4 ~~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~f~~~~SLD~i~~~~~~~~~~yL~~l~~~~~~~v~~y~T~t~~Kfvl   83 (139)
                      +.++.|+|++|+|+..|.|....   +..+.  .+.     +.+-.++.+.+.. ...+-..++++ +.|..-.++-|++
T Consensus         2 I~~i~Il~~~Gk~~lsk~y~~~~---~~~~~--~~~-----~~~~~~i~~~~~~-~~~~i~~~~~~-~vy~~~~~Lyfv~   69 (158)
T 1w63_Q            2 MRFMLLFSRQGKLRLQKWYLATS---DKERK--KMV-----RELMQVVLARKPK-MCSFLEWRDLK-VVYKRYASLYFCC   69 (158)
T ss_dssp             EEEEEEECSSSCEEEEEESSCCC---HHHHH--HHH-----HHHHHHHHTSCSS-SCSEEEETTEE-EEEEEETTEEEEE
T ss_pred             eEEEEEECCCCCEEEEEeCCCCC---HHHHH--HHH-----HHHHHHHhccCCC-CCCeEEECCEE-EEEEEECCEEEEE
Confidence            46889999999999999997421   11111  111     1111222211110 11223345544 5677778999999


Q ss_pred             Eecc-CChHHHHHHHHHHHHHHHHhhhC
Q psy3409          84 VHDS-KNEEGIKKFFTSVYELFIKYSLN  110 (139)
Q Consensus        84 ~~~~-~~~~~i~~~f~~i~~~Yv~~v~N  110 (139)
                      +++. .++-.+-.+++.+.++.-+|.-|
T Consensus        70 ~~~~~~Nel~~le~L~~~vevl~~yf~~   97 (158)
T 1w63_Q           70 AIEGQDNELITLELIHRYVELLDKYFGS   97 (158)
T ss_dssp             EECSSSCHHHHHHHHHHHHHHHHHHHSS
T ss_pred             EecCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence            9876 24555566677766666666533

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S

Probab=81.61  E-value=10  Score=25.85  Aligned_cols=94  Identities=12%  Similarity=0.162  Sum_probs=55.5

Q ss_pred             eEEEEEEcCCCCeeEEEecCCCCCCCchhhHHHHHHHHHhHHHHHHhhcccccCCceeeeeeCCeeEEEEEcCCCcEEEE
Q psy3409           4 RYYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFLM   83 (139)
Q Consensus         4 ~~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~f~~~~SLD~i~~~~~~~~~~yL~~l~~~~~~~v~~y~T~t~~Kfvl   83 (139)
                      +.++.|+|++|+++..|.|.+.+   .+.+..       ..+.+-.++.+.+.. ...+...++++ +.|..-.++-|++
T Consensus         2 I~~i~i~~~~Gk~~l~k~y~~~~---~~~~~~-------~~~~f~~~v~~~~~~-~~~~~~~~~~~-~vy~~~~~Lyfv~   69 (142)
T 2vgl_S            2 IRFILIQNRAGKTRLAKWYMQFD---DDEKQK-------LIEEVHAVVTVRDAK-HTNFVEFRNFK-IIYRRYAGLYFCI   69 (142)
T ss_dssp             EEEEEEEETTSCEEEEEECSCCC---HHHHHH-------HHHHHHHHHHTCCTT-SCSEEEETTEE-EEEEEETTEEEEE
T ss_pred             eEEEEEEcCCCCEEEEEeCCCCC---hhhhHH-------HHHHHHHHHhcCCCC-CCCEEEECCEE-EEEEEECCEEEEE
Confidence            46889999999999999997421   111111       122222333211110 11223345544 5677778999999


Q ss_pred             Eecc-CChHHHHHHHHHHHHHHHHhhh
Q psy3409          84 VHDS-KNEEGIKKFFTSVYELFIKYSL  109 (139)
Q Consensus        84 ~~~~-~~~~~i~~~f~~i~~~Yv~~v~  109 (139)
                      +++. .++-.+-.+++.+.++.-+|.-
T Consensus        70 ~~~~~~N~l~~le~L~~~ve~l~~yf~   96 (142)
T 2vgl_S           70 CVDVNDNNLAYLEAIHNFVEVLNEYFH   96 (142)
T ss_dssp             EECTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             EeCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            9875 3455566777777777777753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d2j3wa1	140	d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musc	1e-46

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]} Length = 140

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  145 bits (368), Expect = 1e-46
 Identities = 70/139 (50%), Positives = 106/139 (76%), Gaps = 2/139 (1%)

Query: 1   MANRYYFVMVGREDNPLYQRGFSC--KEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
           M+  +YFV+VG  DNP+++  F    K  + +++++  +FIAHA+LDL+DE +W +++MY
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 59  LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
           LKT+DKFN+  VSAFVT   ++F+M+HD + E+GIK FFT VY+L+IK+++NPFY+ N+P
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query: 119 INSTYFDSKVNFLGRKFLT 137
           I S+ FD KV FLG+K L 
Sbjct: 121 IRSSAFDRKVQFLGKKHLL 139

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d2j3wa1	140	Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]	100.0
d1ioua_	140	Synaptobrevin homolog 1 ykt6 {Baker's yeast (Sacch	95.57
d2vglm2	141	Mu2 adaptin (clathrin coat assembly protein AP50)	93.3
d2vgls_	142	Sigma2 adaptin (clathrin coat assembly protein AP1	81.25

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-48  Score=280.74  Aligned_cols=137  Identities=50%  Similarity=0.979  Sum_probs=127.6

Q ss_pred             CCceEEEEEEcCCCCeeEEEecCCCCC--CCchhhHHHHHHHHHhHHHHHHhhcccccCCceeeeeeCCeeEEEEEcCCC
Q psy3409           1 MANRYYFVMVGREDNPLYQRGFSCKEA--NDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTG   78 (139)
Q Consensus         1 m~~~~~~~Ii~~~~~ply~~~~~~~~~--~~~~~~~~~~f~~~~SLD~i~~~~~~~~~~yL~~l~~~~~~~v~~y~T~t~   78 (139)
                      |+++|+|+||||+|+|||+++|++...  ..++.+++.||++|+|||++|++.|.++++|||.++++++|+||||+|+||
T Consensus         1 ~~~~y~f~IIg~~~~pLY~~ef~~~~~~~~~~~~~~~~~fi~hssLDive~~~~~~~~~~l~~l~~~~~~~v~~y~T~tg   80 (140)
T d2j3wa1           1 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH   80 (140)
T ss_dssp             CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTC
T ss_pred             CccEEEEEEEcCCCCeeEEEecCCcccccccchHHHHHHHHHHHHHHHHHHhcccCCCccceeEEecCCEEEEEEEcCCC
Confidence            999999999999999999999985322  223446778999999999999999999999999999999999999999999


Q ss_pred             cEEEEEeccCChHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcChhHHHHHHHHHHhhcc
Q psy3409          79 VKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINSTYFDSKVNFLGRKFLT  137 (139)
Q Consensus        79 ~Kfvl~~~~~~~~~i~~~f~~i~~~Yv~~v~NPf~~~~~~I~s~~F~~~v~~~~~~~~~  137 (139)
                      +||||+++++.++.++.+|+++|++|+++++||||++++||+|+.||++|++++++||.
T Consensus        81 ~Kfvl~td~~~~~~i~~~~~~v~~lYv~~v~NPfy~~~~pI~s~~Fd~~v~~~~~~~l~  139 (140)
T d2j3wa1          81 MRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKHLL  139 (140)
T ss_dssp             CEEEEEESSCCHHHHHHHHHHHHHHHHHHHHSTTCCTTCCCCCHHHHHHHHHHHHHHTC
T ss_pred             cEEEEEeCCCcchHHHHHHHHHHHHHHHHhhCccCCCCCcccCHHHHHHHHHHHHHHcc
Confidence            99999999988889999999999999999999999999999999999999999999985

>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.57  E-value=0.14  Score=34.10  Aligned_cols=100  Identities=6%  Similarity=0.076  Sum_probs=58.4

Q ss_pred             eEEEEEEcCC-CCeeEEEecCCCCCCCchhhHHH-HHHHHHhHHHHHHhhcccccCCceeeeeeCCeeEEEEEcCCCcEE
Q psy3409           4 RYYFVMVGRE-DNPLYQRGFSCKEANDNENKYYY-EFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKF   81 (139)
Q Consensus         4 ~~~~~Ii~~~-~~ply~~~~~~~~~~~~~~~~~~-~f~~~~SLD~i~~~~~~~~~~yL~~l~~~~~~~v~~y~T~t~~Kf   81 (139)
                      ++++.|+-.+ ..|+....-..-++.+-=++-.. .|+... -..+.++..+.    -+.....++|.+|+|+...|+-+
T Consensus         3 l~~~~v~~~~~~~~~~L~~a~Dlssf~ffqR~svkE~~~f~-sr~i~~Rt~~g----~r~sv~~~~y~~h~yv~~~gl~~   77 (140)
T d1ioua_           3 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFF-AETVASRTGAG----ERQSIEEGNYIGHVYARSEGICG   77 (140)
T ss_dssp             CCEEEEEEEETTEEEEEEEEECCSSCCTTHHHHHHHHHHHH-HHHHHHHCCSS----SEEEEEETTEEEEEECCSSSCEE
T ss_pred             EEEEEEEEcCCCCcEEEeeeccccccceeehHhHHHHHHHH-HHHHhhcCCCC----ceEEEEcCCeEEEEEEeeCCEEE
Confidence            4566676543 46776654432222111122211 233332 34455554433    25556679999999999999999


Q ss_pred             EEEeccCC-hHHHHHHHHHHHHHHHHhh
Q psy3409          82 LMVHDSKN-EEGIKKFFTSVYELFIKYS  108 (139)
Q Consensus        82 vl~~~~~~-~~~i~~~f~~i~~~Yv~~v  108 (139)
                      ++++|..- ..-.=.++++|.+.|.+..
T Consensus        78 l~i~d~~Yp~r~AF~~L~~i~~eF~~~~  105 (140)
T d1ioua_          78 VLITDKQYPVRPAYTLLNKILDEYLVAH  105 (140)
T ss_dssp             EEEBCTTSCHHHHHHHHHHHHHHHHHSS
T ss_pred             EEEECCCcchHHHHHHHHHHHHHHHHHc
Confidence            99999732 2334566788887776554