Psyllid ID: psy3445

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
MALDLHKKALSSTKYKVKPLEITEDIVNSKYYKDPLQLLGEKNFGRPRKIPKDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDRIHT
Secondary Structure (PSIPRED)
cccccHHHccccccccccccHHHHHHHcccccccHHHHHHcccccccccccccccccHHHHHHcccEEEEEccccHHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccHccHHHcccccccccHHHHHHHHHcccccccHHHHccccccccccccccccccccHHHHHcccEEEEEccccHHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MALDLHKKAlsstkykvkpleitedivnskyykdplqllgeknfgrprkipkdeigtpiqeffrdasvfvtggtgfMGKILVEKLLRAIPHLKHIyllvrpkkgKAVQERLEAIFEDRIHT
Flexible Loop (DISEMBL)
maldlhkkalsstkykvkpleitedivnskyykdplqllgeknfgrprkiPKDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIyllvrpkkgkAVQERLEAIFEDRIHT
Low Complexity Region (SEG)
MALDLHKKALSSTKYKVKPLEITEDIVNSKYYKDPLQLLGEKNFGRPRKIPKDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDRIHT
Disordered region (IsUnstruct)
**************YKVKPLEITEDIVNSKYYKDPLQLLGEKNFGRPRKIPKDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAV**************
Disordered Region (DISOPRED)
*************************IVNSKYYKD************************IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDRIHT
Disordered Region (DISEMBL)
MALDLHKKALSSTKYKVKPLEITEDIVNSKYYKDPLQLLGEKNFGRPRKIPKDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDRIHT
Disordered Region (DISPRO)
*AL*LHKKALSSTKYKVKPLEITEDIVNSKYYKDPLQLLGE*************IGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDRIHT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALDLHKKALSSTKYKVKPLEITEDIVNSKYYKDPLQLLGEKNFGRPRKIPKDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDRIHT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	121	2.2.26 [Sep-21-2011]
A1ZAI5	625	Putative fatty acyl-CoA r	no	N/A	0.479	0.092	0.586	2e-15
Q7TNT2	515	Fatty acyl-CoA reductase	yes	N/A	0.504	0.118	0.508	2e-13
Q960W6	516	Putative fatty acyl-CoA r	no	N/A	0.528	0.124	0.5	6e-13
Q0P5J1	515	Fatty acyl-CoA reductase	yes	N/A	0.504	0.118	0.475	3e-12
Q5ZM72	515	Fatty acyl-CoA reductase	no	N/A	0.462	0.108	0.517	1e-11
Q96K12	515	Fatty acyl-CoA reductase	yes	N/A	0.520	0.122	0.460	1e-11
Q922J9	515	Fatty acyl-CoA reductase	no	N/A	0.504	0.118	0.442	4e-11
Q66H50	515	Fatty acyl-CoA reductase	no	N/A	0.504	0.118	0.442	6e-11
Q5R834	515	Fatty acyl-CoA reductase	no	N/A	0.504	0.118	0.442	6e-11
Q8WVX9	515	Fatty acyl-CoA reductase	no	N/A	0.504	0.118	0.442	6e-11

>sp|A1ZAI5|FACR1_DROME Putative fatty acyl-CoA reductase CG5065 OS=Drosophila melanogaster GN=CG5065 PE=3 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 46/58 (79%)

Query: 58  PIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIF 115
           PI +F+   SVF+TGGTGFMGK+LVEKLLR+ P +++IYLL+RPK+G+ V  RL  + 
Sbjct: 118 PIAQFYAGRSVFITGGTGFMGKVLVEKLLRSCPEIRNIYLLIRPKRGQEVSARLTELL 175

Catalyzes the reduction of saturated fatty acyl-CoA to fatty alcohols.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: nEC: 2

>sp|Q7TNT2|FACR2_MOUSE Fatty acyl-CoA reductase 2 OS=Mus musculus GN=Far2 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 44/61 (72%)

Query: 59  IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDR 118
           I  F+ + S+ +TG TGF+GK+L+EKL R  PHLK IY+LVRPK G+ +QER+  I   +
Sbjct: 4   IAAFYSNKSILITGATGFLGKVLMEKLFRTSPHLKVIYILVRPKSGQTLQERVFQILNSK 63

Query: 119 I 119
           +
Sbjct: 64  L 64

Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. The preferred substrates are C16, C18, C18:1 and C18:2 but low activity can be observed with C10-C14 substrates.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: n

EC: 2

>sp|Q960W6|FACR3_DROME Putative fatty acyl-CoA reductase CG8306 OS=Drosophila melanogaster GN=CG8306 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 49/64 (76%)

Query: 56  GTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIF 115
            +PI +F+   +VF+TG TGF+G  +VEKLLR +P++  +YLL+R KKGK+VQERLE + 
Sbjct: 3   SSPITDFYAGRNVFITGATGFVGVTIVEKLLRDVPNVGTLYLLMRAKKGKSVQERLEELK 62

Query: 116 EDRI 119
           ++ +
Sbjct: 63  KNSV 66

Catalyzes the reduction of saturated fatty acyl-CoA to fatty alcohols.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: n

EC: 2

>sp|Q0P5J1|FACR2_BOVIN Fatty acyl-CoA reductase 2 OS=Bos taurus GN=FAR2 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 44/61 (72%)

Query: 59  IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDR 118
           I  F+   S+ +TG TGFMGK+L+EKL R  P LK +Y+LVRPK+G+ +Q+R+  I + +
Sbjct: 4   IAAFYGGKSILITGATGFMGKVLMEKLFRTSPDLKVVYILVRPKQGQTLQQRVFQILDSK 63

Query: 119 I 119
           +
Sbjct: 64  L 64

Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. The preferred substrates are C16, C18, C18:1 and C18:2 but low activity can be observed with C10-C14 substrates.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: n

EC: 2

>sp|Q5ZM72|FACR1_CHICK Fatty acyl-CoA reductase 1 OS=Gallus gallus GN=FAR1 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 42/56 (75%)

Query: 59  IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAI 114
           I E++   +V +TG TGFMGK+L+EKLLR+ P +K +Y+LVRPK G+  + R+E I
Sbjct: 4   IPEYYEGKNVLLTGATGFMGKVLLEKLLRSCPKVKAVYVLVRPKAGQTPEARIEEI 59

Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols.

Gallus gallus (taxid: 9031)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: n

EC: 2

>sp|Q96K12|FACR2_HUMAN Fatty acyl-CoA reductase 2 OS=Homo sapiens GN=FAR2 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 44/63 (69%)

Query: 57  TPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFE 116
           + I  F+   S+ +TG TGF+GK+L+EKL R  P LK IY+LVRPK G+ +Q+R+  I +
Sbjct: 2   STIAAFYGGKSILITGATGFLGKVLMEKLFRTSPDLKVIYILVRPKAGQTLQQRVFQILD 61

Query: 117 DRI 119
            ++
Sbjct: 62  SKL 64

Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. The preferred substrates are C16, C18, C18:1 and C18:2 but low activity can be observed with C10-C14 substrates.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: n

EC: 2

>sp|Q922J9|FACR1_MOUSE Fatty acyl-CoA reductase 1 OS=Mus musculus GN=Far1 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 43/61 (70%)

Query: 59  IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDR 118
           I E++   ++ +TG TGF+GK+L+EKLLR+ P +  +Y+LVR K G+  QER+E I   +
Sbjct: 4   IPEYYEGKNILLTGATGFLGKVLLEKLLRSCPRVNSVYVLVRQKAGQTPQERVEEILSSK 63

Query: 119 I 119
           +
Sbjct: 64  L 64

Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: n

EC: 2

>sp|Q66H50|FACR1_RAT Fatty acyl-CoA reductase 1 OS=Rattus norvegicus GN=Far1 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 43/61 (70%)

Query: 59  IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDR 118
           I E++   ++ +TG TGF+GK+L+EKLLR+ P +  +Y+LVR K G+  QER+E I   +
Sbjct: 4   IPEYYEGKNILLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEILSGK 63

Query: 119 I 119
           +
Sbjct: 64  L 64

Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: n

EC: 2

>sp|Q5R834|FACR1_PONAB Fatty acyl-CoA reductase 1 OS=Pongo abelii GN=FAR1 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 43/61 (70%)

Query: 59  IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDR 118
           I E++   +V +TG TGF+GK+L+EKLLR+ P +  +Y+LVR K G+  QER+E +   +
Sbjct: 4   IPEYYEGKNVLLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEVLSGK 63

Query: 119 I 119
           +
Sbjct: 64  L 64

Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: n

EC: 2

>sp|Q8WVX9|FACR1_HUMAN Fatty acyl-CoA reductase 1 OS=Homo sapiens GN=FAR1 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 43/61 (70%)

Query: 59  IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDR 118
           I E++   +V +TG TGF+GK+L+EKLLR+ P +  +Y+LVR K G+  QER+E +   +
Sbjct: 4   IPEYYEGKNVLLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEVLSGK 63

Query: 119 I 119
           +
Sbjct: 64  L 64

Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: n

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
328720028	553	PREDICTED: putative fatty acyl-CoA reduc	0.975	0.213	0.65	1e-39
193622556	551	PREDICTED: putative fatty acyl-CoA reduc	0.975	0.214	0.655	5e-39
326510115	552	predicted protein [Hordeum vulgare subsp	0.942	0.206	0.528	2e-28
328720030	552	PREDICTED: putative fatty acyl-CoA reduc	0.942	0.206	0.528	1e-27
307207067	541	Fatty acyl-CoA reductase 1 [Harpegnathos	0.586	0.131	0.605	2e-18
332030738	537	Putative fatty acyl-CoA reductase [Acrom	0.586	0.132	0.591	1e-17
322803051	530	hypothetical protein SINV_00151 [Solenop	0.603	0.137	0.561	1e-17
307176419	541	Fatty acyl-CoA reductase 1 [Camponotus f	0.553	0.123	0.626	2e-17
345489767	517	PREDICTED: putative fatty acyl-CoA reduc	0.487	0.114	0.627	6e-17
307176727	606	Fatty acyl-CoA reductase 1 [Camponotus f	0.487	0.097	0.644	1e-16

>gi|328720028|ref|XP_001946873.2| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Acyrthosiphon pisum]

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/120 (65%), Positives = 98/120 (81%), Gaps = 2/120 (1%)

Query: 1   MALDLHKKALSSTKYKVKPLEI-TEDIVNSKYYKDPLQLLGEKNFGRPRKIPKDEIGTPI 59
           MALDLH+K +   +   +PL++ T+DI+NSKY  DPL+LLGE++F  PR++ + EIG+PI
Sbjct: 1   MALDLHRKYIEK-RQDSEPLQVSTKDIINSKYCLDPLELLGERSFNEPREVDESEIGSPI 59

Query: 60  QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDRI 119
           QEFFRD  VF+TGGTGFMGK+LVEKLLR  PH+KHIYLL+R KKGK V ERLE IFEDR+
Sbjct: 60  QEFFRDGVVFLTGGTGFMGKVLVEKLLRTCPHIKHIYLLIRSKKGKNVDERLEDIFEDRL 119

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193622556|ref|XP_001950244.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Acyrthosiphon pisum]

 Score =  164 bits (416), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 78/119 (65%), Positives = 95/119 (79%), Gaps = 1/119 (0%)

Query: 1   MALDLHKKALSSTKYKVKPLEITEDIVNSKYYKDPLQLLGEKNFGRPRKIPKDEIGTPIQ 60
           MALDLH+K +   K    PL   +DI+NSKYY DPL+LLGE++F  PR+I + EIG+P+Q
Sbjct: 1   MALDLHRKYIEK-KQDSAPLVPIKDIINSKYYLDPLELLGERSFNEPREIEESEIGSPVQ 59

Query: 61  EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDRI 119
           EFFRD  VF+TGGTGFMGK+LVEKLLR  PH+KHIYLL+R KKGK V +RLE IFEDR+
Sbjct: 60  EFFRDGVVFLTGGTGFMGKVLVEKLLRTCPHIKHIYLLIRSKKGKNVDQRLEDIFEDRL 118

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326510115|dbj|BAJ87274.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/125 (52%), Positives = 90/125 (72%), Gaps = 11/125 (8%)

Query: 1   MALDLHKKALSSTKYKVKPLEITEDIVNSKYYKDPLQLLGEKNFGRPR------KIPKDE 54
           MALDLH+K     K K    EI ++IV  ++  +PL+L+GE +F  P       K+P+ +
Sbjct: 1   MALDLHRKN-EFKKSKKSYDEIMKEIVTDEFPLNPLELVGELSFDNPEVLEETDKLPRSD 59

Query: 55  IGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAI 114
           I    QEF++DA++F+TGGTGFMGK+L+EKL R+ PHLKHIYLL+R KKGK V ER++AI
Sbjct: 60  I----QEFYKDATIFITGGTGFMGKMLIEKLSRSCPHLKHIYLLIRNKKGKDVNERIDAI 115

Query: 115 FEDRI 119
           FEDR+
Sbjct: 116 FEDRL 120

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|328720030|ref|XP_001944359.2| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Acyrthosiphon pisum]

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/125 (52%), Positives = 88/125 (70%), Gaps = 11/125 (8%)

Query: 1   MALDLHKKALSSTKYKVKPLEITEDIVNSKYYKDPLQLLGEKNFGRP------RKIPKDE 54
           MALDLH+K     K K    EI ++IV   +  +PLQL+GE +F  P       K+P+ +
Sbjct: 1   MALDLHRKN-EFKKSKKSYDEIIKEIVTDDFPLNPLQLVGELSFDNPLTLEETDKLPRSD 59

Query: 55  IGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAI 114
           +    QEF+RD S+F+TGGTGFMGK+L+EKL R+ PHLKHIYLL+R KKGK V ER++AI
Sbjct: 60  V----QEFYRDTSIFITGGTGFMGKMLIEKLSRSCPHLKHIYLLIRNKKGKDVNERIDAI 115

Query: 115 FEDRI 119
           F+DR+
Sbjct: 116 FDDRL 120

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207067|gb|EFN84876.1| Fatty acyl-CoA reductase 1 [Harpegnathos saltator]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/71 (60%), Positives = 54/71 (76%)

Query: 47  PRKIPKDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKA 106
           P+  P +E  +P+QEF+   SVF+TGGTGFMGK+L+EKLLR  P +  IYLLVRPKKGK 
Sbjct: 32  PKNSPSNEKLSPVQEFYNGQSVFITGGTGFMGKLLIEKLLRDCPGIASIYLLVRPKKGKD 91

Query: 107 VQERLEAIFED 117
           V +R E IF+D
Sbjct: 92  VHQRTEEIFDD 102

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030738|gb|EGI70414.1| Putative fatty acyl-CoA reductase [Acromyrmex echinatior]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/71 (59%), Positives = 54/71 (76%)

Query: 51  PKDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQER 110
           P +E  +PIQEF+   S+F+TGGTGFMGK+L+EKLLR  P +  IYLLVRPKKGK V +R
Sbjct: 31  PVNEKLSPIQEFYNGQSIFITGGTGFMGKLLIEKLLRTCPGVTSIYLLVRPKKGKDVHQR 90

Query: 111 LEAIFEDRIHT 121
            E IF+D + +
Sbjct: 91  TEDIFDDTVFS 101

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322803051|gb|EFZ23139.1| hypothetical protein SINV_00151 [Solenopsis invicta]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/73 (56%), Positives = 54/73 (73%)

Query: 47  PRKIPKDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKA 106
           P   P +E  +PIQEF+   ++F+TGGTGFMGK+L+EK+LR  P +  IYLLVRPKKGK 
Sbjct: 27  PENSPVNEKLSPIQEFYYGQTIFITGGTGFMGKLLIEKILRTCPGVTSIYLLVRPKKGKD 86

Query: 107 VQERLEAIFEDRI 119
           V +R E IF+D +
Sbjct: 87  VHQRTEEIFDDAV 99

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176419|gb|EFN65993.1| Fatty acyl-CoA reductase 1 [Camponotus floridanus]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/67 (62%), Positives = 52/67 (77%)

Query: 51  PKDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQER 110
           P +E  +PIQEF+   S+F+TGGTGFMGK+L+EKLLR  P +  IYLLVRPKKGK V +R
Sbjct: 37  PINENLSPIQEFYYGQSIFITGGTGFMGKLLIEKLLRTCPGVASIYLLVRPKKGKDVHQR 96

Query: 111 LEAIFED 117
            E IF+D
Sbjct: 97  TEEIFDD 103

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489767|ref|XP_003426226.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like isoform 2 [Nasonia vitripennis] gi|345489769|ref|XP_001601849.2| PREDICTED: putative fatty acyl-CoA reductase CG5065-like isoform 1 [Nasonia vitripennis]

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 52/59 (88%)

Query: 57  TPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIF 115
           T ++EF+RD S+F+TGGTGFMGK+LVEKLLR+ P +K+IYLL+RPK+G+ VQ+RL+ + 
Sbjct: 11  TSVKEFYRDRSIFITGGTGFMGKVLVEKLLRSCPGIKNIYLLMRPKRGQGVQQRLQELL 69

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176727|gb|EFN66142.1| Fatty acyl-CoA reductase 1 [Camponotus floridanus]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 52/59 (88%)

Query: 57  TPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIF 115
           T +++F+RD S+F+TGGTGFMGK+LVEKLLR+ P +K+IYLL+RPKKG+ VQERL+ + 
Sbjct: 100 TSVKDFYRDRSIFITGGTGFMGKVLVEKLLRSCPDIKNIYLLMRPKKGQNVQERLQELL 158

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
FB|FBgn0033464	517	CG1441 [Drosophila melanogaste	0.561	0.131	0.565	2e-14
FB|FBgn0034145	625	CG5065 [Drosophila melanogaste	0.446	0.086	0.629	6e-14
FB|FBgn0029821	494	CG4020 [Drosophila melanogaste	0.512	0.125	0.532	6e-13
FB|FBgn0039620	517	CG1443 [Drosophila melanogaste	0.537	0.125	0.529	6.5e-13
FB|FBgn0043792	506	CG30427 [Drosophila melanogast	0.495	0.118	0.483	1.3e-12
FB|FBgn0034142	516	CG8306 [Drosophila melanogaste	0.520	0.122	0.507	2.3e-12
UNIPROTKB|D4A2S1	503	Far2 "Protein Far2" [Rattus no	0.504	0.121	0.508	2.8e-12
MGI|MGI:2687035	515	Far2 "fatty acyl CoA reductase	0.504	0.118	0.508	2.9e-12
RGD|1565966	515	Far2 "fatty acyl CoA reductase	0.504	0.118	0.508	2.9e-12
FB|FBgn0032055	523	CG13091 [Drosophila melanogast	0.462	0.107	0.561	3e-12

FB|FBgn0033464 CG1441 [Drosophila melanogaster (taxid:7227)]

 Score = 193 (73.0 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 39/69 (56%), Positives = 53/69 (76%)

Query:    49 KIPKDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQ 108
             +I  +E+   I E F+  S+F+TGGTGF+GK+LVEKLLR+   LK IYLL+RPKKGK  Q
Sbjct:    19 EIDDNEVDR-IAECFKGRSLFITGGTGFLGKVLVEKLLRSCGGLKRIYLLIRPKKGKDPQ 77

Query:   109 ERLEAIFED 117
             ER++ IF++
Sbjct:    78 ERIKDIFQN 86

GO:0080019 "fatty-acyl-CoA reductase (alcohol-forming) activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

FB|FBgn0034145 CG5065 [Drosophila melanogaster (taxid:7227)]

 Score = 190 (71.9 bits), Expect = 6.0e-14, P = 6.0e-14
 Identities = 34/54 (62%), Positives = 45/54 (83%)

Query:    58 PIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERL 111
             PI +F+   SVF+TGGTGFMGK+LVEKLLR+ P +++IYLL+RPK+G+ V  RL
Sbjct:   118 PIAQFYAGRSVFITGGTGFMGKVLVEKLLRSCPEIRNIYLLIRPKRGQEVSARL 171

GO:0080019 "fatty-acyl-CoA reductase (alcohol-forming) activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

FB|FBgn0029821 CG4020 [Drosophila melanogaster (taxid:7227)]

 Score = 179 (68.1 bits), Expect = 6.0e-13, P = 6.0e-13
 Identities = 33/62 (53%), Positives = 46/62 (74%)

Query:    59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDR 118
             I E F D  +FVTG +GF+GK L+EKLLR+ P L  IY+L+RPKKG  ++ERL+  +E R
Sbjct:     3 IPEAFEDQEIFVTGASGFVGKALIEKLLRSCPKLGRIYVLMRPKKGHTIEERLQLQWESR 62

Query:   119 IH 120
             ++
Sbjct:    63 LY 64

GO:0080019 "fatty-acyl-CoA reductase (alcohol-forming) activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

FB|FBgn0039620 CG1443 [Drosophila melanogaster (taxid:7227)]

 Score = 179 (68.1 bits), Expect = 6.5e-13, P = 6.5e-13
 Identities = 36/68 (52%), Positives = 49/68 (72%)

Query:    52 KDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERL 111
             KDE  +P+Q F++D  VF+TGGTGF GKI++EKLLR +  +  IYLL+R KKGK    R+
Sbjct:    27 KDE--SPMQMFYKDKGVFLTGGTGFFGKIIIEKLLR-VTEVGQIYLLIRTKKGKDAFARI 83

Query:   112 EAIFEDRI 119
             E +F D +
Sbjct:    84 EDLFNDPV 91

GO:0080019 "fatty-acyl-CoA reductase (alcohol-forming) activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

FB|FBgn0043792 CG30427 [Drosophila melanogaster (taxid:7227)]

 Score = 176 (67.0 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 29/60 (48%), Positives = 48/60 (80%)

Query:    57 TPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFE 116
             +P+QE+++D ++F+TG +GFMGK+L+EKLL +   LK + ++ RPK+GKA + RLE +F+
Sbjct:     6 SPVQEYYKDKTIFITGASGFMGKVLLEKLLYSCHSLKEVIIICRPKRGKAPETRLEEMFK 65

GO:0080019 "fatty-acyl-CoA reductase (alcohol-forming) activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

FB|FBgn0034142 CG8306 [Drosophila melanogaster (taxid:7227)]

 Score = 174 (66.3 bits), Expect = 2.3e-12, P = 2.3e-12
 Identities = 32/63 (50%), Positives = 49/63 (77%)

Query:    57 TPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFE 116
             +PI +F+   +VF+TG TGF+G  +VEKLLR +P++  +YLL+R KKGK+VQERLE + +
Sbjct:     4 SPITDFYAGRNVFITGATGFVGVTIVEKLLRDVPNVGTLYLLMRAKKGKSVQERLEELKK 63

Query:   117 DRI 119
             + +
Sbjct:    64 NSV 66

GO:0080019 "fatty-acyl-CoA reductase (alcohol-forming) activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|D4A2S1 Far2 "Protein Far2" [Rattus norvegicus (taxid:10116)]

 Score = 173 (66.0 bits), Expect = 2.8e-12, P = 2.8e-12
 Identities = 31/61 (50%), Positives = 44/61 (72%)

Query:    59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDR 118
             I  F+ + S+ +TG TGF+GK+L+EKL R  PHLK IY+LVRPK G+ +QER+  I   +
Sbjct:     4 IAAFYSNKSILITGATGFLGKVLMEKLFRTSPHLKVIYILVRPKSGQTLQERVFQILNSK 63

Query:   119 I 119
             +
Sbjct:    64 L 64

GO:0000166 "nucleotide binding" evidence=IEA

GO:0080019 "fatty-acyl-CoA reductase (alcohol-forming) activity" evidence=IEA

MGI|MGI:2687035 Far2 "fatty acyl CoA reductase 2" [Mus musculus (taxid:10090)]

 Score = 173 (66.0 bits), Expect = 2.9e-12, P = 2.9e-12
 Identities = 31/61 (50%), Positives = 44/61 (72%)

Query:    59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDR 118
             I  F+ + S+ +TG TGF+GK+L+EKL R  PHLK IY+LVRPK G+ +QER+  I   +
Sbjct:     4 IAAFYSNKSILITGATGFLGKVLMEKLFRTSPHLKVIYILVRPKSGQTLQERVFQILNSK 63

Query:   119 I 119
             +
Sbjct:    64 L 64

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0010025 "wax biosynthetic process" evidence=TAS

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0035336 "long-chain fatty-acyl-CoA metabolic process" evidence=ISO

GO:0050062 "long-chain-fatty-acyl-CoA reductase activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0080019 "fatty-acyl-CoA reductase (alcohol-forming) activity" evidence=ISO

RGD|1565966 Far2 "fatty acyl CoA reductase 2" [Rattus norvegicus (taxid:10116)]

 Score = 173 (66.0 bits), Expect = 2.9e-12, P = 2.9e-12
 Identities = 31/61 (50%), Positives = 44/61 (72%)

Query:    59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDR 118
             I  F+ + S+ +TG TGF+GK+L+EKL R  PHLK IY+LVRPK G+ +QER+  I   +
Sbjct:     4 IAAFYSNKSILITGATGFLGKVLMEKLFRTSPHLKVIYILVRPKSGQTLQERVFQILNSK 63

Query:   119 I 119
             +
Sbjct:    64 L 64

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA;ISO

GO:0035336 "long-chain fatty-acyl-CoA metabolic process" evidence=IEA;ISO

GO:0050062 "long-chain-fatty-acyl-CoA reductase activity" evidence=IEA;ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0080019 "fatty-acyl-CoA reductase (alcohol-forming) activity" evidence=IEA;ISO

FB|FBgn0032055 CG13091 [Drosophila melanogaster (taxid:7227)]

 Score = 173 (66.0 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 32/57 (56%), Positives = 46/57 (80%)

Query:    57 TPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEA 113
             T I +F++D SVFVTGGTGF+GK+++EKLLR+   ++ +YLLVRPKK + V+ R +A
Sbjct:     3 TDILQFYKDKSVFVTGGTGFLGKVIIEKLLRSTD-VRRVYLLVRPKKNETVEGRFQA 58

GO:0080019 "fatty-acyl-CoA reductase (alcohol-forming) activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7TNT2	FACR2_MOUSE	1, ., 2, ., 1, ., n, 2	0.5081	0.5041	0.1184	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	121
cd05236	320	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F	1e-19
pfam07993	245	pfam07993, NAD_binding_4, Male sterility protein	3e-16
PLN02503	605	PLN02503, PLN02503, fatty acyl-CoA reductase 2	5e-13
PLN02996	491	PLN02996, PLN02996, fatty acyl-CoA reductase	8e-12
cd05263	293	cd05263, MupV_like_SDR_e, Pseudomonas fluorescens	3e-08
COG3320	382	COG3320, COG3320, Putative dehydrogenase domain of	3e-07
PRK07201	657	PRK07201, PRK07201, short chain dehydrogenase; Pro	2e-06
TIGR01746	367	TIGR01746, Thioester-redct, thioester reductase do	6e-06
cd05235	290	cd05235, SDR_e1, extended (e) SDRs, subgroup 1	1e-05
TIGR03443	1389	TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh	2e-05
cd05228	318	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr	0.002
cd08946	200	cd08946, SDR_e, extended (e) SDRs	0.002
cd05243	203	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	0.004
cd05262	291	cd05262, SDR_a7, atypical (a) SDRs, subgroup 7	0.004

>gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs

 Score = 81.6 bits (202), Expect = 1e-19
 Identities = 26/48 (54%), Positives = 37/48 (77%)

Query: 67  SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAI 114
           SV +TG TGF+GK+L+EKLLR+ P +  IYLL+R K G++ +ERL  +
Sbjct: 2   SVLITGATGFLGKVLLEKLLRSCPDIGKIYLLIRGKSGQSAEERLREL 49

SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320

>gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein

 Score = 71.1 bits (175), Expect = 3e-16
 Identities = 25/48 (52%), Positives = 33/48 (68%), Gaps = 1/48 (2%)

Query: 70  VTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFED 117
           +TG TGF+GK+L+EKLLR+ P +K IY LVR K G++  ERL      
Sbjct: 1   LTGATGFLGKVLLEKLLRSTPEVK-IYCLVRAKDGESALERLRQELLK 47

This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245

>gnl|CDD|215279 PLN02503, PLN02503, fatty acyl-CoA reductase 2

 Score = 63.7 bits (155), Expect = 5e-13
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 2/61 (3%)

Query: 52  KDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERL 111
            D IG  I EF R  +  +TG TGF+ K+L+EK+LR  P +  IYLL++ K  +A  ERL
Sbjct: 108 ADGIG--IAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERL 165

Query: 112 E 112
           +
Sbjct: 166 K 166

Length = 605

>gnl|CDD|215538 PLN02996, PLN02996, fatty acyl-CoA reductase

 Score = 60.1 bits (146), Expect = 8e-12
 Identities = 23/51 (45%), Positives = 35/51 (68%)

Query: 61  EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERL 111
           +F  + ++ VTG TGF+ KI VEK+LR  P++K +YLL+R    K+  +RL
Sbjct: 7   QFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRL 57

Length = 491

>gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 5/55 (9%)

Query: 68  VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEA--IFEDRIH 120
           VFVTGGTGF+G+ LV++LL        + +LVR +      ER+E   +  DR+ 
Sbjct: 1   VFVTGGTGFLGRHLVKRLLENG---FKVLVLVRSESLGEAHERIEEAGLEADRVR 52

This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 68  VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDRIH 120
           V +TG TGF+G  L+ +LL      K +  LVR +  +A   RLE  F+   H
Sbjct: 3   VLLTGATGFLGAYLLLELLDR-SDAK-VICLVRAQSDEAALARLEKTFDLYRH 53

Length = 382

>gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 9/56 (16%)

Query: 69  FVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFE----DRIH 120
           FVTGGTGF+G+ LV +LL        +++LVR         RLEA+      DR+ 
Sbjct: 4   FVTGGTGFIGRRLVSRLLDRRREAT-VHVLVRR----QSLSRLEALAAYWGADRVV 54

Length = 657

>gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain

 Score = 43.2 bits (102), Expect = 6e-06
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 67  SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFED 117
           +V +TG TGF+G  L+E+LLR     K +  LVR    +   ERL      
Sbjct: 1   TVLLTGATGFLGAYLLEELLRRSTQAK-VICLVRAASEEHAMERLREALRS 50

This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP|466833 from M. leprae, GP|435954 from Anabaena and OMNI|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. Length = 367

>gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 67  SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLE 112
           +V +TG TGF+G  L+ +LL+   ++  IY LVR K  +A  ERL 
Sbjct: 1   TVLLTGATGFLGAYLLRELLKR-KNVSKIYCLVRAKDEEAALERLI 45

This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290

>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 15/95 (15%)

Query: 21   EITEDIVNSKYYKDPLQLLGEKNFGRPRKIPKDE---IGTPIQEFFRDASVFVTGGTGFM 77
            E  E ++   Y KD   L+       P+  P  +     TPI       +VF+TG TGF+
Sbjct: 935  EEEETVLELDYAKDAKTLVDS----LPKSYPSRKELDASTPI-------TVFLTGATGFL 983

Query: 78   GK-ILVEKLLRAIPHLKHIYLLVRPKKGKAVQERL 111
            G  IL + L R       ++  VR K  +A  ERL
Sbjct: 984  GSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERL 1018

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389

>gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 9/53 (16%)

Query: 68  VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDRIH 120
           + VTG TGF+G  LV  LL        +  LVR             +    + 
Sbjct: 1   ILVTGATGFLGSNLVRALLAQ---GYRVRALVRS------GSDAVLLDGLPVE 44

This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318

>gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 68 VFVTGGTGFMGKILVEKLLRA 88
          + VTGG GF+G  LV +LL  
Sbjct: 1  ILVTGGAGFIGSHLVRRLLER 21

Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200

>gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5

 Score = 34.9 bits (81), Expect = 0.004
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 67  SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEA 113
            V V G TG +G+ +V +LL        +  LVR        E   A
Sbjct: 1   KVLVVGATGKVGRHVVRELLD---RGYQVRALVRDPSQAEKLEAAGA 44

This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203

>gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 12/21 (57%), Positives = 16/21 (76%)

Query: 68 VFVTGGTGFMGKILVEKLLRA 88
          VFVTG TGF+G  +V +L+ A
Sbjct: 3  VFVTGATGFIGSAVVRELVAA 23

This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	99.53
PLN02996	491	fatty acyl-CoA reductase	99.26
PLN02503	605	fatty acyl-CoA reductase 2	99.19
KOG1221|consensus	467		99.19
KOG1502|consensus	327		98.74
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	98.71
COG3320	382	Putative dehydrogenase domain of multifunctional n	98.54
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	98.44
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	98.42
PRK14982	340	acyl-ACP reductase; Provisional	98.42
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	98.41
TIGR01746	367	Thioester-redct thioester reductase domain. It has	98.39
PLN00198	338	anthocyanidin reductase; Provisional	98.32
CHL00194	317	ycf39 Ycf39; Provisional	98.32
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	98.3
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	98.29
PLN02206	442	UDP-glucuronate decarboxylase	98.29
PLN02427	386	UDP-apiose/xylose synthase	98.29
PLN02583	297	cinnamoyl-CoA reductase	98.29
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	98.29
PLN02650	351	dihydroflavonol-4-reductase	98.27
PLN02653	340	GDP-mannose 4,6-dehydratase	98.24
PLN02572	442	UDP-sulfoquinovose synthase	98.24
PLN02166	436	dTDP-glucose 4,6-dehydratase	98.22
PLN02214	342	cinnamoyl-CoA reductase	98.22
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	98.2
PLN02695	370	GDP-D-mannose-3',5'-epimerase	98.15
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	98.15
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	98.14
PLN02896	353	cinnamyl-alcohol dehydrogenase	98.14
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	98.14
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	98.13
KOG1429|consensus	350		98.12
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	98.12
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	98.1
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	98.1
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	98.1
PLN02686	367	cinnamoyl-CoA reductase	98.08
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	98.08
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	98.07
PLN02240	352	UDP-glucose 4-epimerase	98.07
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.06
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	98.05
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	98.05
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	98.05
PLN02260	668	probable rhamnose biosynthetic enzyme	98.04
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	98.03
PRK12828	239	short chain dehydrogenase; Provisional	98.03
PRK07806	248	short chain dehydrogenase; Provisional	98.03
PLN02778	298	3,5-epimerase/4-reductase	98.02
PRK06194	287	hypothetical protein; Provisional	98.0
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	98.0
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	98.0
PRK09135	249	pteridine reductase; Provisional	97.99
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	97.98
PRK07890	258	short chain dehydrogenase; Provisional	97.97
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	97.96
PRK09186	256	flagellin modification protein A; Provisional	97.96
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	97.95
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.93
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	97.93
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.93
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	97.92
PRK07774	250	short chain dehydrogenase; Provisional	97.92
PRK12829	264	short chain dehydrogenase; Provisional	97.92
PRK05717	255	oxidoreductase; Validated	97.92
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	97.91
PRK10675	338	UDP-galactose-4-epimerase; Provisional	97.9
PRK08703	239	short chain dehydrogenase; Provisional	97.89
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	97.89
PRK07326	237	short chain dehydrogenase; Provisional	97.88
PRK07201	657	short chain dehydrogenase; Provisional	97.88
PRK06138	252	short chain dehydrogenase; Provisional	97.88
PRK06196	315	oxidoreductase; Provisional	97.88
PRK06057	255	short chain dehydrogenase; Provisional	97.87
PRK07523	255	gluconate 5-dehydrogenase; Provisional	97.87
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.87
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	97.87
PRK06197	306	short chain dehydrogenase; Provisional	97.86
PLN00016	378	RNA-binding protein; Provisional	97.86
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	97.85
PRK08628	258	short chain dehydrogenase; Provisional	97.84
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	97.83
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	97.83
PRK12827	249	short chain dehydrogenase; Provisional	97.83
PRK05875	276	short chain dehydrogenase; Provisional	97.83
PRK07035	252	short chain dehydrogenase; Provisional	97.83
PRK06914	280	short chain dehydrogenase; Provisional	97.83
PRK06949	258	short chain dehydrogenase; Provisional	97.81
PRK06523	260	short chain dehydrogenase; Provisional	97.8
PRK06500	249	short chain dehydrogenase; Provisional	97.8
PRK07577	234	short chain dehydrogenase; Provisional	97.8
PRK08213	259	gluconate 5-dehydrogenase; Provisional	97.8
PRK06172	253	short chain dehydrogenase; Provisional	97.8
PRK08264	238	short chain dehydrogenase; Validated	97.79
PRK07814	263	short chain dehydrogenase; Provisional	97.79
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	97.79
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.79
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.78
PRK12320	699	hypothetical protein; Provisional	97.77
PRK05854	313	short chain dehydrogenase; Provisional	97.77
PRK08278	273	short chain dehydrogenase; Provisional	97.77
PRK06180	277	short chain dehydrogenase; Provisional	97.77
PRK12939	250	short chain dehydrogenase; Provisional	97.77
PRK07063	260	short chain dehydrogenase; Provisional	97.76
PRK07067	257	sorbitol dehydrogenase; Provisional	97.76
PRK09291	257	short chain dehydrogenase; Provisional	97.76
PRK06482	276	short chain dehydrogenase; Provisional	97.76
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.75
PRK05867	253	short chain dehydrogenase; Provisional	97.75
PRK06841	255	short chain dehydrogenase; Provisional	97.75
PRK06179	270	short chain dehydrogenase; Provisional	97.75
PRK07856	252	short chain dehydrogenase; Provisional	97.75
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.74
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	97.74
PRK12746	254	short chain dehydrogenase; Provisional	97.74
PRK09072	263	short chain dehydrogenase; Provisional	97.73
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	97.73
PRK07478	254	short chain dehydrogenase; Provisional	97.73
PRK08219	227	short chain dehydrogenase; Provisional	97.73
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	97.73
PRK08263	275	short chain dehydrogenase; Provisional	97.73
PRK08226	263	short chain dehydrogenase; Provisional	97.72
PRK06398	258	aldose dehydrogenase; Validated	97.72
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	97.72
PRK06182	273	short chain dehydrogenase; Validated	97.72
PRK07453	322	protochlorophyllide oxidoreductase; Validated	97.71
PRK05876	275	short chain dehydrogenase; Provisional	97.7
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	97.7
PRK08085	254	gluconate 5-dehydrogenase; Provisional	97.7
PRK05866	293	short chain dehydrogenase; Provisional	97.7
PRK07102	243	short chain dehydrogenase; Provisional	97.69
PRK07062	265	short chain dehydrogenase; Provisional	97.69
PRK08643	256	acetoin reductase; Validated	97.67
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	97.67
PLN03209	576	translocon at the inner envelope of chloroplast su	97.67
PRK06114	254	short chain dehydrogenase; Provisional	97.66
PRK06128	300	oxidoreductase; Provisional	97.66
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	97.66
PLN02253	280	xanthoxin dehydrogenase	97.66
PRK06701	290	short chain dehydrogenase; Provisional	97.66
PRK08589	272	short chain dehydrogenase; Validated	97.66
PRK07825	273	short chain dehydrogenase; Provisional	97.65
PRK08265	261	short chain dehydrogenase; Provisional	97.65
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.65
PRK07023	243	short chain dehydrogenase; Provisional	97.65
PRK10538	248	malonic semialdehyde reductase; Provisional	97.64
PRK07060	245	short chain dehydrogenase; Provisional	97.64
PRK07074	257	short chain dehydrogenase; Provisional	97.64
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	97.64
PRK08277	278	D-mannonate oxidoreductase; Provisional	97.64
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	97.63
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	97.63
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.63
PRK06124	256	gluconate 5-dehydrogenase; Provisional	97.62
PRK12367	245	short chain dehydrogenase; Provisional	97.62
PRK06101	240	short chain dehydrogenase; Provisional	97.62
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	97.62
PRK08251	248	short chain dehydrogenase; Provisional	97.62
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	97.62
PRK08177	225	short chain dehydrogenase; Provisional	97.62
PRK12742	237	oxidoreductase; Provisional	97.61
PRK09242	257	tropinone reductase; Provisional	97.61
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.61
PRK08267	260	short chain dehydrogenase; Provisional	97.6
PRK12937	245	short chain dehydrogenase; Provisional	97.6
PRK07775	274	short chain dehydrogenase; Provisional	97.59
PRK08017	256	oxidoreductase; Provisional	97.59
PRK05993	277	short chain dehydrogenase; Provisional	97.59
PRK06924	251	short chain dehydrogenase; Provisional	97.59
PRK07454	241	short chain dehydrogenase; Provisional	97.58
PRK09134	258	short chain dehydrogenase; Provisional	97.58
PRK07576	264	short chain dehydrogenase; Provisional	97.58
PRK12747	252	short chain dehydrogenase; Provisional	97.58
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	97.58
PRK06181	263	short chain dehydrogenase; Provisional	97.57
PRK07024	257	short chain dehydrogenase; Provisional	97.57
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	97.56
PRK07904	253	short chain dehydrogenase; Provisional	97.56
COG2910	211	Putative NADH-flavin reductase [General function p	97.56
PRK12935	247	acetoacetyl-CoA reductase; Provisional	97.55
PRK05650	270	short chain dehydrogenase; Provisional	97.54
PRK07985	294	oxidoreductase; Provisional	97.54
PRK07097	265	gluconate 5-dehydrogenase; Provisional	97.54
PRK08339	263	short chain dehydrogenase; Provisional	97.54
PRK12744	257	short chain dehydrogenase; Provisional	97.54
PRK05693	274	short chain dehydrogenase; Provisional	97.54
PRK06198	260	short chain dehydrogenase; Provisional	97.53
PRK08936	261	glucose-1-dehydrogenase; Provisional	97.51
KOG1371|consensus	343		97.51
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	97.47
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.47
PRK07109	334	short chain dehydrogenase; Provisional	97.46
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	97.46
PRK12743	256	oxidoreductase; Provisional	97.45
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	97.45
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.45
PRK06483	236	dihydromonapterin reductase; Provisional	97.44
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.44
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	97.44
PRK12938	246	acetyacetyl-CoA reductase; Provisional	97.43
PRK05872	296	short chain dehydrogenase; Provisional	97.43
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.42
PRK07677	252	short chain dehydrogenase; Provisional	97.4
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	97.39
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	97.39
PLN02780	320	ketoreductase/ oxidoreductase	97.38
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	97.38
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.37
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	97.37
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.37
PRK07831	262	short chain dehydrogenase; Provisional	97.36
PRK06125	259	short chain dehydrogenase; Provisional	97.35
PRK06953	222	short chain dehydrogenase; Provisional	97.35
PRK05865	854	hypothetical protein; Provisional	97.35
PRK12824	245	acetoacetyl-CoA reductase; Provisional	97.33
PRK06139	330	short chain dehydrogenase; Provisional	97.33
PRK06123	248	short chain dehydrogenase; Provisional	97.32
TIGR02415	254	23BDH acetoin reductases. One member of this famil	97.32
PRK07832	272	short chain dehydrogenase; Provisional	97.3
PRK07201	657	short chain dehydrogenase; Provisional	97.28
PRK09620	229	hypothetical protein; Provisional	97.26
PRK08340	259	glucose-1-dehydrogenase; Provisional	97.25
PRK07069	251	short chain dehydrogenase; Validated	97.24
PLN02260	668	probable rhamnose biosynthetic enzyme	97.24
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	97.22
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	97.22
PRK09009	235	C factor cell-cell signaling protein; Provisional	97.2
KOG1430|consensus	361		97.19
PRK06947	248	glucose-1-dehydrogenase; Provisional	97.19
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	97.17
PRK05884	223	short chain dehydrogenase; Provisional	97.15
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	97.13
PRK06720	169	hypothetical protein; Provisional	97.09
PRK05855	582	short chain dehydrogenase; Validated	97.09
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	97.09
PRK08303	305	short chain dehydrogenase; Provisional	97.07
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	97.06
PRK07791	286	short chain dehydrogenase; Provisional	97.05
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	97.04
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	97.01
PRK08324	681	short chain dehydrogenase; Validated	97.0
PRK08309	177	short chain dehydrogenase; Provisional	97.0
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.94
PRK07578	199	short chain dehydrogenase; Provisional	96.92
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	96.92
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	96.89
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	96.88
PRK08862	227	short chain dehydrogenase; Provisional	96.87
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	96.86
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	96.85
PRK07041	230	short chain dehydrogenase; Provisional	96.78
PRK06484	520	short chain dehydrogenase; Validated	96.78
PRK06484	520	short chain dehydrogenase; Validated	96.77
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	96.74
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	96.72
KOG1205|consensus	282		96.71
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	96.71
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.68
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	96.64
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	96.64
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	96.58
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	96.58
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	96.56
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	96.55
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.54
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	96.51
PRK06940	275	short chain dehydrogenase; Provisional	96.41
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	96.4
PRK05599	246	hypothetical protein; Provisional	96.35
COG1028	251	FabG Dehydrogenases with different specificities (	96.34
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.14
KOG1203|consensus	411		95.95
KOG1431|consensus	315		95.93
KOG4039|consensus	238		95.9
KOG1208|consensus	314		95.83
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	95.82
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	95.8
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	95.75
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	95.69
PRK06732	229	phosphopantothenate--cysteine ligase; Validated	95.69
KOG0725|consensus	270		95.59
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	95.58
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	95.56
COG1089	345	Gmd GDP-D-mannose dehydratase [Cell envelope bioge	95.52
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	95.46
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	95.44
KOG1201|consensus	300		95.38
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	95.34
KOG1207|consensus	245		95.21
PLN00015	308	protochlorophyllide reductase	95.21
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	95.15
PLN02383	344	aspartate semialdehyde dehydrogenase	94.98
KOG2865|consensus	391		94.91
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	94.8
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	94.75
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	94.75
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	94.72
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	94.69
KOG0747|consensus	331		94.55
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	94.53
PRK12548	289	shikimate 5-dehydrogenase; Provisional	94.43
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	94.42
KOG1014|consensus	312		94.3
PRK05086	312	malate dehydrogenase; Provisional	94.28
KOG1372|consensus	376		94.11
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	94.07
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	94.03
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	93.98
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	93.49
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	93.31
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	93.24
PLN00106	323	malate dehydrogenase	93.1
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	93.02
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	93.02
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.96
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	92.75
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	92.71
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	92.57
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	92.51
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	92.49
KOG4169|consensus	261		92.49
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	92.42
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	92.14
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	92.13
KOG2015|consensus	422		92.04
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	91.92
PRK06849	389	hypothetical protein; Provisional	91.8
TIGR00243	389	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	91.73
PRK08655	437	prephenate dehydrogenase; Provisional	91.66
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	91.62
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	91.47
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	91.42
PRK00048	257	dihydrodipicolinate reductase; Provisional	91.34
PTZ00325	321	malate dehydrogenase; Provisional	91.27
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	91.18
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.17
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	91.12
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	91.11
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	91.05
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	91.01
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	90.84
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	90.81
PRK08328	231	hypothetical protein; Provisional	90.74
KOG1611|consensus	249		90.66
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	90.66
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	90.63
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	90.57
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	90.56
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	90.52
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	90.3
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	90.23
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	90.23
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	90.11
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	89.69
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	89.69
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	89.64
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	89.56
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	89.52
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	89.48
PLN02696	454	1-deoxy-D-xylulose-5-phosphate reductoisomerase	89.34
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	89.33
PRK09496	453	trkA potassium transporter peripheral membrane com	89.31
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	89.29
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	89.26
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	89.23
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	89.06
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	89.06
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	88.87
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	88.72
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	88.7
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	88.69
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	88.64
COG0743	385	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	88.52
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	88.41
KOG1209|consensus	289		88.21
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	88.13
PRK06153	393	hypothetical protein; Provisional	87.98
PRK08223	287	hypothetical protein; Validated	87.92
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	87.89
PRK15116	268	sulfur acceptor protein CsdL; Provisional	87.89
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	87.85
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	87.43
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	87.39
TIGR02114	227	coaB_strep phosphopantothenate--cysteine ligase, s	87.19
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	87.12
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	87.01
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	86.97
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	86.91
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	86.87
COG5322	351	Predicted dehydrogenase [General function predicti	86.77
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	86.76
KOG2733|consensus	423		86.72
PTZ00117	319	malate dehydrogenase; Provisional	86.59
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	86.56
KOG1200|consensus	256		86.55
KOG1478|consensus	341		86.49
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	86.46
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	86.43
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	86.21
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	86.1
PRK05442	326	malate dehydrogenase; Provisional	85.75
KOG2013|consensus	603		85.75
PRK13243	333	glyoxylate reductase; Reviewed	85.74
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	85.72
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	85.72
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	85.71
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	85.49
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	85.45
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	85.42
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	85.28
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	85.16
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	84.99
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	84.96
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	84.94
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	84.83
PRK07411	390	hypothetical protein; Validated	84.7
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	84.69
PRK06223	307	malate dehydrogenase; Reviewed	84.62
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	84.61
PLN00112	444	malate dehydrogenase (NADP); Provisional	84.45
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	84.31
PRK13940	414	glutamyl-tRNA reductase; Provisional	84.12
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	84.11
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	84.07
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	84.06
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	83.99
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	83.98
PLN00203	519	glutamyl-tRNA reductase	83.89
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	83.83
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	83.72
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	83.64
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	83.58
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	83.49
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	83.31
KOG2018|consensus	430		83.24
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	82.87
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	82.76
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	82.54
COG3268	382	Uncharacterized conserved protein [Function unknow	82.53
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	82.38
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	82.32
PRK12480	330	D-lactate dehydrogenase; Provisional	82.31
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	82.29
PLN02602	350	lactate dehydrogenase	82.2
TIGR00036	266	dapB dihydrodipicolinate reductase.	82.13
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	81.97
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	81.91
PRK13771	334	putative alcohol dehydrogenase; Provisional	81.9
PRK07417	279	arogenate dehydrogenase; Reviewed	81.81
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	81.71
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	81.41
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	81.37
PRK06444	197	prephenate dehydrogenase; Provisional	81.36
PLN02256	304	arogenate dehydrogenase	81.33
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	81.22
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	81.14
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	81.11
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	81.1
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	81.09
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	81.04
PTZ00245	287	ubiquitin activating enzyme; Provisional	81.01
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	80.99
KOG0023|consensus	360		80.94
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	80.88
PRK08306	296	dipicolinate synthase subunit A; Reviewed	80.8
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	80.71
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	80.62
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	80.47
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	80.35
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	80.17
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	80.1
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	80.03

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.53  E-value=2.4e-14  Score=123.38  Aligned_cols=83  Identities=27%  Similarity=0.330  Sum_probs=72.9

Q ss_pred             cCCceeeccchhhhhhc---ccccCChhhhhCCCCCCCCCCCCCCCCCcchhhhhcCCeEEEEcCCChHHHHHHHHHHHh
Q psy3445          12 STKYKVKPLEITEDIVN---SKYYKDPLQLLGEKNFGRPRKIPKDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRA   88 (121)
Q Consensus        12 ~~~~~~~~~p~~~~~i~---~~~~~~~~dLl~r~~~~~~~~~~~~~~~~~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~   88 (121)
                      .+|++++++|.+.++++   ...++++||||||+    + +..   |...+..+++||+|+||||||+||+++|+|+++.
T Consensus       202 ~~~~~v~~lP~~~~l~~~~~~lreI~ieDLLgR~----p-V~~---d~~~i~~~~~gK~vLVTGagGSiGsel~~qil~~  273 (588)
T COG1086         202 RTGIAVRILPQLTDLKDLNGQLREIEIEDLLGRP----P-VAL---DTELIGAMLTGKTVLVTGGGGSIGSELCRQILKF  273 (588)
T ss_pred             hcCCcEEecCcHHHHHHhccccccCCHHHHhCCC----C-CCC---CHHHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhc
Confidence            47899999999999776   33499999999996    2 333   6778999999999999999999999999999999


Q ss_pred             CCCccEEEEEecCCCC
Q psy3445          89 IPHLKHIYLLVRPKKG  104 (121)
Q Consensus        89 ~~~~~~V~~l~R~~~~  104 (121)
                      +|.  +|+.+.|++.+
T Consensus       274 ~p~--~i~l~~~~E~~  287 (588)
T COG1086         274 NPK--EIILFSRDEYK  287 (588)
T ss_pred             CCC--EEEEecCchHH
Confidence            884  99999998765

>PLN02996 fatty acyl-CoA reductase

Probab=99.26  E-value=1.1e-11  Score=105.05  Aligned_cols=63  Identities=37%  Similarity=0.741  Sum_probs=55.0

Q ss_pred             cchhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHH-HHhhccC
Q psy3445          57 TPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLE-AIFEDRI  119 (121)
Q Consensus        57 ~~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~-e~~~~~~  119 (121)
                      +++.+|+++++|+|||||||+|++++++|++.++++.+|++++|.....++.+|+. +++..+.
T Consensus         3 ~~i~~~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~   66 (491)
T PLN02996          3 GSCVQFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDL   66 (491)
T ss_pred             ccHHHHhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchH
Confidence            46899999999999999999999999999998888889999999988888888874 5554433

>PLN02503 fatty acyl-CoA reductase 2

Probab=99.19  E-value=4.9e-11  Score=104.02  Aligned_cols=65  Identities=40%  Similarity=0.763  Sum_probs=56.2

Q ss_pred             CCcchhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHH-HHhhccC
Q psy3445          55 IGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLE-AIFEDRI  119 (121)
Q Consensus        55 ~~~~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~-e~~~~~~  119 (121)
                      |-..+.+|+++++|+|||||||+|++++++|++.+|++.+|++++|.+.+.++.+|+. +++..+.
T Consensus       109 ~~~~I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~l  174 (605)
T PLN02503        109 DGIGIAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAEL  174 (605)
T ss_pred             CCcchhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhh
Confidence            5557899999999999999999999999999999888889999999988888888884 5554443

>KOG1221|consensus

Probab=99.19  E-value=3.2e-11  Score=102.44  Aligned_cols=63  Identities=54%  Similarity=0.985  Sum_probs=59.2

Q ss_pred             chhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHHHHhhccCC
Q psy3445          58 PIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDRIH  120 (121)
Q Consensus        58 ~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~e~~~~~~F  120 (121)
                      .+.+|+++|+|+|||||||+|+.+++.|++..|++++||++.|.+.++++.+|+.+++.++.|
T Consensus         5 ~i~~f~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF   67 (467)
T KOG1221|consen    5 DIVQFYKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLF   67 (467)
T ss_pred             cHHHHhCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHH
Confidence            488999999999999999999999999999999999999999999999999999988877766

>KOG1502|consensus

Probab=98.74  E-value=1.8e-08  Score=82.56  Aligned_cols=39  Identities=31%  Similarity=0.410  Sum_probs=36.1

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCc
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGK  105 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~  105 (121)
                      .+++|+||||+||||+||+++||++||   .|++.+|++...
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY---~V~gtVR~~~~~   43 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGY---TVRGTVRDPEDE   43 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCC---EEEEEEcCcchh
Confidence            578999999999999999999999999   899999987663

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=98.71  E-value=1.7e-08  Score=77.73  Aligned_cols=45  Identities=44%  Similarity=0.774  Sum_probs=35.7

Q ss_pred             EEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHHHHh
Q psy3445          70 VTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIF  115 (121)
Q Consensus        70 VTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~e~~  115 (121)
                      |||||||+|++++++|++.++.+ +|+||+|..+..++.+|+.+.+
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~-~I~cLvR~~~~~~~~~rl~~~l   45 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDV-KIYCLVRASSSQSALERLKDAL   45 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TT-EEEEEE-SSSHHHHHHHHHGGG
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCc-EEEEEEeCcccccchhhhhhhc
Confidence            79999999999999999997755 9999999887767777875443

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.54  E-value=1.4e-07  Score=78.64  Aligned_cols=49  Identities=37%  Similarity=0.603  Sum_probs=43.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHHHHhh
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFE  116 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~e~~~  116 (121)
                      ++|++||||||+|.++++.|+.+-+  .+|+|++|..+.+.+.+|+.+.++
T Consensus         1 ~~vlLTGATGFLG~yLl~eLL~~~~--~kv~cLVRA~s~E~a~~RL~~~~~   49 (382)
T COG3320           1 RNVLLTGATGFLGAYLLLELLDRSD--AKVICLVRAQSDEAALARLEKTFD   49 (382)
T ss_pred             CeEEEecCchHhHHHHHHHHHhcCC--CcEEEEEecCCHHHHHHHHHHHhh
Confidence            5799999999999999999999865  599999998887777888887665

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=98.44  E-value=3.5e-07  Score=73.48  Aligned_cols=37  Identities=27%  Similarity=0.307  Sum_probs=33.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++|+|||||||||++++++|++.++   +|++++|..
T Consensus        13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~---~V~~~d~~~   49 (348)
T PRK15181         13 LAPKRWLITGVAGFIGSGLLEELLFLNQ---TVIGLDNFS   49 (348)
T ss_pred             ccCCEEEEECCccHHHHHHHHHHHHCCC---EEEEEeCCC
Confidence            5679999999999999999999999986   799998854

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=98.42  E-value=4.2e-07  Score=72.72  Aligned_cols=40  Identities=33%  Similarity=0.404  Sum_probs=35.4

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      |+++|+|+||||+||||+++++.|++.|+   +|+++.|+...
T Consensus         1 ~~~~k~ilItGatG~IG~~l~~~L~~~G~---~V~~~~r~~~~   40 (349)
T TIGR02622         1 FWQGKKVLVTGHTGFKGSWLSLWLLELGA---EVYGYSLDPPT   40 (349)
T ss_pred             CcCCCEEEEECCCChhHHHHHHHHHHCCC---EEEEEeCCCcc
Confidence            56789999999999999999999999987   78899987543

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK14982 acyl-ACP reductase; Provisional

Probab=98.42  E-value=2.5e-07  Score=76.15  Aligned_cols=81  Identities=15%  Similarity=0.135  Sum_probs=58.4

Q ss_pred             cCCceeeccchhhhhhcccc---------cCChhh------------hhCCCCCCCCCCCCCCCCCcchhhhhcCCeEEE
Q psy3445          12 STKYKVKPLEITEDIVNSKY---------YKDPLQ------------LLGEKNFGRPRKIPKDEIGTPIQEFFRDASVFV   70 (121)
Q Consensus        12 ~~~~~~~~~p~~~~~i~~~~---------~~~~~d------------Ll~r~~~~~~~~~~~~~~~~~i~~~~~~~~VlV   70 (121)
                      +.|+++..+|++..++.+..         .++|+|            ++++.     ...    +...+...+.+++|+|
T Consensus        90 ~~G~~i~~Lg~~tsiv~~~~~~~~~~~~r~i~ie~~~~TtGNs~T~~ll~~~-----V~l----a~~~lg~~l~~k~VLV  160 (340)
T PRK14982         90 KKGINITALGGFSSIIFENFNLLQHKQVRNTTLEWERFTTGNTHTAYVICRQ-----VEQ----NAPRLGIDLSKATVAV  160 (340)
T ss_pred             HCCCeEEEcCChHHHhcCCcccccccccccceeccccccCCchhHHHHHHHH-----HHH----hHHHhccCcCCCEEEE
Confidence            47999999999999997543         345554            44431     111    1222333578899999


Q ss_pred             EcCCChHHHHHHHHHHHh-CCCccEEEEEecCCC
Q psy3445          71 TGGTGFMGKILVEKLLRA-IPHLKHIYLLVRPKK  103 (121)
Q Consensus        71 TGatGfIGs~ll~~Ll~~-~~~~~~V~~l~R~~~  103 (121)
                      |||+|+||++++++|+.. ++  .+++++.|+..
T Consensus       161 tGAtG~IGs~lar~L~~~~gv--~~lilv~R~~~  192 (340)
T PRK14982        161 VGATGDIGSAVCRWLDAKTGV--AELLLVARQQE  192 (340)
T ss_pred             EccChHHHHHHHHHHHhhCCC--CEEEEEcCCHH
Confidence            999999999999999864 44  48999998744

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=98.41  E-value=4e-07  Score=71.19  Aligned_cols=38  Identities=29%  Similarity=0.378  Sum_probs=33.8

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++++|+|||||||||++++++|++.|+   +|++++|+...
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~---~V~~~~r~~~~   40 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGY---TVKATVRDPND   40 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCC---EEEEEEcCCCc
Confidence            568999999999999999999999987   79999987543

>TIGR01746 Thioester-redct thioester reductase domain

Probab=98.39  E-value=5.8e-07  Score=70.35  Aligned_cols=46  Identities=39%  Similarity=0.649  Sum_probs=35.9

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHHH
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEA  113 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~e  113 (121)
                      +|+|||||||||++++++|++.++. .+|++++|+.......+++.+
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~-~~V~~l~R~~~~~~~~~~l~~   46 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQ-AKVICLVRAASEEHAMERLRE   46 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCC-CEEEEEEccCCHHHHHHHHHH
Confidence            5899999999999999999998742 379999998764333444443

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PLN00198 anthocyanidin reductase; Provisional

Probab=98.32  E-value=9.5e-07  Score=70.15  Aligned_cols=38  Identities=29%  Similarity=0.440  Sum_probs=33.6

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++|+||||+||||++++++|++.|+   +|++++|+..
T Consensus         7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~---~V~~~~r~~~   44 (338)
T PLN00198          7 TGKKTACVIGGTGFLASLLIKLLLQKGY---AVNTTVRDPE   44 (338)
T ss_pred             CCCCeEEEECCchHHHHHHHHHHHHCCC---EEEEEECCCC
Confidence            4578999999999999999999999987   7888888754

>CHL00194 ycf39 Ycf39; Provisional

Probab=98.32  E-value=8.8e-07  Score=70.24  Aligned_cols=35  Identities=31%  Similarity=0.459  Sum_probs=31.9

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+|+|||||||+|++++++|++.|+   +|++++|+..
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~---~V~~l~R~~~   35 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGY---QVRCLVRNLR   35 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC---eEEEEEcChH
Confidence            5899999999999999999999987   7999999743

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=98.30  E-value=1.3e-06  Score=68.82  Aligned_cols=38  Identities=26%  Similarity=0.294  Sum_probs=33.9

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+++|+|||||||||++++++|++.|+   +|++++|+...
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~   41 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGY---TVKATVRDLTD   41 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEECCCcc
Confidence            478999999999999999999999987   79999997654

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=98.29  E-value=2.1e-06  Score=74.99  Aligned_cols=46  Identities=30%  Similarity=0.401  Sum_probs=39.0

Q ss_pred             CCcchhhhhcCCeEEEEcCCChHHHHHHHHHHHh-CCCccEEEEEecCCC
Q psy3445          55 IGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRA-IPHLKHIYLLVRPKK  103 (121)
Q Consensus        55 ~~~~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~-~~~~~~V~~l~R~~~  103 (121)
                      ...+...+.++|+|+|||||||||++++++|++. ++   +|++++|...
T Consensus       305 ~~~~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~---~V~~l~r~~~  351 (660)
T PRK08125        305 NSKPACSAKRRTRVLILGVNGFIGNHLTERLLRDDNY---EVYGLDIGSD  351 (660)
T ss_pred             cccchhhhhcCCEEEEECCCchHHHHHHHHHHhCCCc---EEEEEeCCch
Confidence            3446677889999999999999999999999986 45   7999998653

>PLN02206 UDP-glucuronate decarboxylase

Probab=98.29  E-value=1.4e-06  Score=73.28  Aligned_cols=37  Identities=30%  Similarity=0.455  Sum_probs=32.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++|+|+|||||||||++++++|++.++   +|++++|..
T Consensus       117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~---~V~~ld~~~  153 (442)
T PLN02206        117 RKGLRVVVTGGAGFVGSHLVDRLMARGD---SVIVVDNFF  153 (442)
T ss_pred             cCCCEEEEECcccHHHHHHHHHHHHCcC---EEEEEeCCC
Confidence            3679999999999999999999999987   788888753

>PLN02427 UDP-apiose/xylose synthase

Probab=98.29  E-value=1e-06  Score=71.52  Aligned_cols=36  Identities=25%  Similarity=0.438  Sum_probs=31.5

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhC-CCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAI-PHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~-~~~~~V~~l~R~~  102 (121)
                      +.|+|+|||||||||++++++|++.+ +   +|++++|+.
T Consensus        13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~---~V~~l~r~~   49 (386)
T PLN02427         13 KPLTICMIGAGGFIGSHLCEKLMTETPH---KVLALDVYN   49 (386)
T ss_pred             cCcEEEEECCcchHHHHHHHHHHhcCCC---EEEEEecCc
Confidence            45789999999999999999999984 5   799998864

>PLN02583 cinnamoyl-CoA reductase

Probab=98.29  E-value=1.7e-06  Score=68.06  Aligned_cols=35  Identities=29%  Similarity=0.371  Sum_probs=31.9

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+|||||||||++++++|++.|+   +|++++|+.
T Consensus         6 ~k~vlVTGatG~IG~~lv~~Ll~~G~---~V~~~~R~~   40 (297)
T PLN02583          6 SKSVCVMDASGYVGFWLVKRLLSRGY---TVHAAVQKN   40 (297)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEEcCc
Confidence            57899999999999999999999988   799999964

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=98.29  E-value=1.2e-06  Score=69.89  Aligned_cols=35  Identities=31%  Similarity=0.286  Sum_probs=31.6

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+|+||||+||||++++++|++.|+   +|++++|...
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~---~V~~~~r~~~   35 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY---EVHGLIRRSS   35 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC---EEEEEecCCc
Confidence            5899999999999999999999987   7999998753

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PLN02650 dihydroflavonol-4-reductase

Probab=98.27  E-value=1.3e-06  Score=69.82  Aligned_cols=38  Identities=34%  Similarity=0.485  Sum_probs=33.1

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ..++|+||||+||||++++++|++.++   +|++++|+...
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~---~V~~~~r~~~~   41 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGY---TVRATVRDPAN   41 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCC---EEEEEEcCcch
Confidence            357899999999999999999999987   79999987543

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=98.24  E-value=1.7e-06  Score=68.78  Aligned_cols=37  Identities=27%  Similarity=0.215  Sum_probs=33.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++++|+||||+||||++++++|++.|+   +|+++.|..
T Consensus         4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~---~V~~~~r~~   40 (340)
T PLN02653          4 PPRKVALITGITGQDGSYLTEFLLSKGY---EVHGIIRRS   40 (340)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCC---EEEEEeccc
Confidence            3578999999999999999999999987   798888864

>PLN02572 UDP-sulfoquinovose synthase

Probab=98.24  E-value=1.5e-06  Score=72.90  Aligned_cols=39  Identities=18%  Similarity=0.227  Sum_probs=33.9

Q ss_pred             hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      ....+++++|+||||+||||++++++|++.|+   +|++++|
T Consensus        41 ~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~---~V~~~d~   79 (442)
T PLN02572         41 SSSSSKKKKVMVIGGDGYCGWATALHLSKRGY---EVAIVDN   79 (442)
T ss_pred             CCccccCCEEEEECCCcHHHHHHHHHHHHCCC---eEEEEec
Confidence            44567889999999999999999999999987   6888764

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=98.22  E-value=1.9e-06  Score=72.34  Aligned_cols=36  Identities=31%  Similarity=0.506  Sum_probs=32.1

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.|+|+|||||||||++++++|++.|+   +|++++|..
T Consensus       119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~---~V~~ldr~~  154 (436)
T PLN02166        119 KRLRIVVTGGAGFVGSHLVDKLIGRGD---EVIVIDNFF  154 (436)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC---EEEEEeCCC
Confidence            357999999999999999999999987   799998853

>PLN02214 cinnamoyl-CoA reductase

Probab=98.22  E-value=2.1e-06  Score=69.09  Aligned_cols=38  Identities=26%  Similarity=0.281  Sum_probs=34.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .++++|+||||+||||++++++|++.|+   +|++++|+..
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~---~V~~~~r~~~   45 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGY---TVKGTVRNPD   45 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcC---EEEEEeCCch
Confidence            4678999999999999999999999987   7999999754

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.20  E-value=2.3e-06  Score=66.00  Aligned_cols=35  Identities=46%  Similarity=0.702  Sum_probs=31.3

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .|+|||||||||++++++|++.|+   +|+++.|....
T Consensus         2 ~ILVtG~tGfiG~~l~~~L~~~g~---~V~~~~r~~~~   36 (314)
T COG0451           2 RILVTGGAGFIGSHLVERLLAAGH---DVRGLDRLRDG   36 (314)
T ss_pred             eEEEEcCcccHHHHHHHHHHhCCC---eEEEEeCCCcc
Confidence            499999999999999999999988   79999996543

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=98.15  E-value=3.3e-06  Score=68.84  Aligned_cols=36  Identities=19%  Similarity=0.238  Sum_probs=32.6

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++|+|+|||||||||++++++|++.|+   +|+++.|..
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~---~V~~v~r~~   55 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGH---YIIASDWKK   55 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCC---EEEEEEecc
Confidence            678999999999999999999999987   799998853

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=98.15  E-value=3.9e-06  Score=66.08  Aligned_cols=38  Identities=32%  Similarity=0.349  Sum_probs=33.1

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+|+|+||||+||||++++++|++.|+   +|++++|+...
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~---~V~~~~r~~~~   41 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGY---TINATVRDPKD   41 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC---EEEEEEcCCcc
Confidence            368999999999999999999999987   68888887543

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=98.14  E-value=3.6e-06  Score=60.92  Aligned_cols=34  Identities=38%  Similarity=0.630  Sum_probs=31.4

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        68 VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      |+|+||||++|+.++++|++.++   +|++++|++.+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~---~V~~~~R~~~~   34 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH---EVTALVRSPSK   34 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS---EEEEEESSGGG
T ss_pred             eEEECCCChHHHHHHHHHHHCCC---EEEEEecCchh
Confidence            79999999999999999999986   89999998664

...

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=98.14  E-value=3.9e-06  Score=67.26  Aligned_cols=36  Identities=31%  Similarity=0.420  Sum_probs=32.3

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+||||+||||++++++|++.|+   +|++++|+.
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~---~V~~~~r~~   44 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLLQRGY---TVHATLRDP   44 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCh
Confidence            567999999999999999999999987   788888864

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=98.14  E-value=6.1e-06  Score=61.19  Aligned_cols=35  Identities=34%  Similarity=0.681  Sum_probs=31.1

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCc
Q psy3445          68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGK  105 (121)
Q Consensus        68 VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~  105 (121)
                      |+|||||||||++++++|++.++   .|+.+.|.....
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~---~v~~~~~~~~~~   35 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGH---EVIVLSRSSNSE   35 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTT---EEEEEESCSTGG
T ss_pred             EEEEccCCHHHHHHHHHHHHcCC---cccccccccccc
Confidence            79999999999999999999987   688888876653

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=98.13  E-value=3e-06  Score=64.87  Aligned_cols=34  Identities=32%  Similarity=0.703  Sum_probs=30.8

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        68 VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      |+||||+||||++++++|++.++   +|++++|+...
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~   34 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGH---EVTILTRSPPA   34 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCC---EEEEEeCCCCC
Confidence            68999999999999999999987   79999997654

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>KOG1429|consensus

Probab=98.12  E-value=3.7e-06  Score=68.58  Aligned_cols=38  Identities=32%  Similarity=0.571  Sum_probs=33.6

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+++|+||||+|||||||++.|+..++   .|++++-...+
T Consensus        26 ~~lrI~itGgaGFIgSHLvdkLm~egh---~VIa~Dn~ftg   63 (350)
T KOG1429|consen   26 QNLRILITGGAGFIGSHLVDKLMTEGH---EVIALDNYFTG   63 (350)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHhcCC---eEEEEeccccc
Confidence            458999999999999999999999986   79999876544

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=98.12  E-value=3.8e-06  Score=67.05  Aligned_cols=34  Identities=24%  Similarity=0.420  Sum_probs=29.8

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHh-CCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRA-IPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~-~~~~~~V~~l~R~~  102 (121)
                      |+|+|||||||||++++++|++. ++   +|+++.|+.
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~---~V~~~~r~~   36 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDW---EVYGMDMQT   36 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCC---eEEEEeCcH
Confidence            58999999999999999999986 45   799998853

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=98.10  E-value=8.2e-06  Score=62.84  Aligned_cols=47  Identities=23%  Similarity=0.362  Sum_probs=35.5

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHHHHhh
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFE  116 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~e~~~  116 (121)
                      +|+|||||||||++++++|++.|+   +|+++.|........+.+.+.+.
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~---~v~~~~r~~~d~~~~~~~~~~~~   47 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR---VVVALTSSQLDLTDPEALERLLR   47 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC---EEEEeCCcccCCCCHHHHHHHHH
Confidence            489999999999999999999987   79999996433322334444444

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=98.10  E-value=4.4e-06  Score=63.97  Aligned_cols=42  Identities=36%  Similarity=0.362  Sum_probs=35.8

Q ss_pred             hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ..+..++++|+||||+|++|+.++++|++.++   +|+++.|+..
T Consensus        11 ~~~~~~~~~ilItGasG~iG~~l~~~L~~~g~---~V~~~~R~~~   52 (251)
T PLN00141         11 DAENVKTKTVFVAGATGRTGKRIVEQLLAKGF---AVKAGVRDVD   52 (251)
T ss_pred             ccccccCCeEEEECCCcHHHHHHHHHHHhCCC---EEEEEecCHH
Confidence            34455678999999999999999999999876   7999998753

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=98.10  E-value=3.4e-06  Score=68.27  Aligned_cols=35  Identities=40%  Similarity=0.589  Sum_probs=30.2

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        68 VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      |+||||+|+||+++|+||++.+|.  +|++++|++..
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~--~lil~d~~E~~   35 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPK--KLILFDRDENK   35 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-S--EEEEEES-HHH
T ss_pred             CEEEccccHHHHHHHHHHHhcCCC--eEEEeCCChhH
Confidence            799999999999999999999884  99999998544

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PLN02686 cinnamoyl-CoA reductase

Probab=98.08  E-value=5.2e-06  Score=67.61  Aligned_cols=38  Identities=32%  Similarity=0.435  Sum_probs=33.6

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+|+||||+||||++++++|++.|+   +|++++|+.
T Consensus        50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~---~V~~~~r~~   87 (367)
T PLN02686         50 DAEARLVCVTGGVSFLGLAIVDRLLRHGY---SVRIAVDTQ   87 (367)
T ss_pred             CCCCCEEEEECCchHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            35689999999999999999999999987   688888864

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.08  E-value=4e-06  Score=63.52  Aligned_cols=36  Identities=33%  Similarity=0.515  Sum_probs=32.6

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++|+||||||++|+++|++|++.++   +|++++|++..
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~---~v~~~~r~~~~   36 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGH---EVRAAVRNPEA   36 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCC---EEEEEEeCHHH
Confidence            5799999999999999999999977   89999998654

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=98.07  E-value=6e-06  Score=65.93  Aligned_cols=40  Identities=35%  Similarity=0.646  Sum_probs=33.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++|+|+||||+||||++++++|++.+.. .+|+++.|+..
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~-~~V~~~~r~~~   41 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNP-KKIIIYSRDEL   41 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCC-cEEEEEcCChh
Confidence            57899999999999999999999998621 27888888643

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PLN02240 UDP-glucose 4-epimerase

Probab=98.07  E-value=7.5e-06  Score=64.91  Aligned_cols=37  Identities=27%  Similarity=0.442  Sum_probs=32.6

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++|+|||||||+|++++++|++.++   +|+++.|..
T Consensus         3 ~~~~~vlItGatG~iG~~l~~~L~~~g~---~V~~~~~~~   39 (352)
T PLN02240          3 LMGRTILVTGGAGYIGSHTVLQLLLAGY---KVVVIDNLD   39 (352)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCC
Confidence            4678999999999999999999999876   788888753

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.06  E-value=9.9e-06  Score=60.71  Aligned_cols=39  Identities=13%  Similarity=0.229  Sum_probs=34.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++++++||||+|+||.+++++|++.|+   +|+++.|+...
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~G~---~V~~~~r~~~~   41 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAEGA---RVVVTDRNEEA   41 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHH
Confidence            5788999999999999999999999987   69999998643

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=98.05  E-value=8.6e-06  Score=60.91  Aligned_cols=38  Identities=13%  Similarity=0.179  Sum_probs=34.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++|+||||+|++|.+++++|++.|+   +|++++|+..
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~---~V~~~~r~~~   41 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGA---EVIVVDICGD   41 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            4678999999999999999999999987   7999999753

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=98.05  E-value=1.1e-05  Score=60.77  Aligned_cols=39  Identities=13%  Similarity=0.173  Sum_probs=34.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++++++||||+|+||++++++|++.|+   +|+++.|+...
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~---~v~~~~r~~~~   40 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGA---KVVIADLNDEA   40 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeCCHHH
Confidence            4678999999999999999999999987   79999997543

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=98.05  E-value=1.1e-05  Score=63.75  Aligned_cols=32  Identities=22%  Similarity=0.186  Sum_probs=28.0

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      |+|+||||+||||++++++|++.+    +|+++.|.
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g----~V~~~~~~   32 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG----NLIALDVH   32 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC----CEEEeccc
Confidence            579999999999999999999886    37788875

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=98.04  E-value=7.2e-06  Score=71.43  Aligned_cols=40  Identities=23%  Similarity=0.540  Sum_probs=33.7

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+++.|+|+|||||||||++++++|++.++. .+|+++.|.
T Consensus         2 ~~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~-~~V~~~d~~   41 (668)
T PLN02260          2 ATYEPKNILITGAAGFIASHVANRLIRNYPD-YKIVVLDKL   41 (668)
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHhCCC-CEEEEEeCC
Confidence            3567899999999999999999999998543 278888874

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=98.03  E-value=6.7e-06  Score=63.73  Aligned_cols=35  Identities=23%  Similarity=0.330  Sum_probs=31.4

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +|+||||||++|++++++|++.+.   +|++++|++..
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~---~V~~~~R~~~~   35 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASV---PFLVASRSSSS   35 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCC---cEEEEeCCCcc
Confidence            489999999999999999999987   69999998653

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK12828 short chain dehydrogenase; Provisional

Probab=98.03  E-value=1.3e-05  Score=59.31  Aligned_cols=38  Identities=24%  Similarity=0.288  Sum_probs=34.2

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus         5 ~~~k~vlItGatg~iG~~la~~l~~~G~---~v~~~~r~~~   42 (239)
T PRK12828          5 LQGKVVAITGGFGGLGRATAAWLAARGA---RVALIGRGAA   42 (239)
T ss_pred             CCCCEEEEECCCCcHhHHHHHHHHHCCC---eEEEEeCChH
Confidence            4689999999999999999999999987   7999999754

>PRK07806 short chain dehydrogenase; Provisional

Probab=98.03  E-value=1.7e-05  Score=59.77  Aligned_cols=37  Identities=24%  Similarity=0.261  Sum_probs=33.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|+||.+++++|++.|+   +|+++.|+.
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~G~---~V~~~~r~~   40 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGAGA---HVVVNYRQK   40 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            4678999999999999999999999987   688888864

>PLN02778 3,5-epimerase/4-reductase

Probab=98.02  E-value=1.9e-05  Score=62.61  Aligned_cols=33  Identities=15%  Similarity=0.141  Sum_probs=27.9

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      .|+|+||||+||||++++++|++.|+   +|+...+
T Consensus         9 ~~kiLVtG~tGfiG~~l~~~L~~~g~---~V~~~~~   41 (298)
T PLN02778          9 TLKFLIYGKTGWIGGLLGKLCQEQGI---DFHYGSG   41 (298)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCC---EEEEecC
Confidence            47899999999999999999999987   5654433

>PRK06194 hypothetical protein; Provisional

Probab=98.00  E-value=1.5e-05  Score=61.43  Aligned_cols=38  Identities=13%  Similarity=0.065  Sum_probs=33.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|+||++++++|++.|.   +|+++.|+..
T Consensus         4 ~~~k~vlVtGasggIG~~la~~l~~~G~---~V~~~~r~~~   41 (287)
T PRK06194          4 FAGKVAVITGAASGFGLAFARIGAALGM---KLVLADVQQD   41 (287)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCC---EEEEEeCChH
Confidence            4678999999999999999999999987   7888888643

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=98.00  E-value=1.6e-05  Score=60.02  Aligned_cols=38  Identities=21%  Similarity=0.237  Sum_probs=34.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|+||++++++|++.|+   +|+++.|++.
T Consensus         5 ~~~~~vlItGasg~iG~~la~~l~~~G~---~v~~~~r~~~   42 (262)
T PRK13394          5 LNGKTAVVTGAASGIGKEIALELARAGA---AVAIADLNQD   42 (262)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC---eEEEEeCChH
Confidence            4689999999999999999999999987   6888898763

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=98.00  E-value=9.4e-06  Score=66.94  Aligned_cols=39  Identities=33%  Similarity=0.558  Sum_probs=34.6

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ..++++|+|||||||||++++++|++.|+   +|++++|+..
T Consensus        57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~---~V~~l~R~~~   95 (390)
T PLN02657         57 EPKDVTVLVVGATGYIGKFVVRELVRRGY---NVVAVAREKS   95 (390)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEEechh
Confidence            35678999999999999999999999987   7999999754

>PRK09135 pteridine reductase; Provisional

Probab=97.99  E-value=1.2e-05  Score=60.02  Aligned_cols=36  Identities=17%  Similarity=0.225  Sum_probs=32.4

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++++++||||+|+||++++++|++.++   +|+++.|..
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~---~v~~~~r~~   40 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGY---RVAIHYHRS   40 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCCC
Confidence            568999999999999999999999987   789888863

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=97.98  E-value=9.6e-06  Score=63.41  Aligned_cols=31  Identities=35%  Similarity=0.508  Sum_probs=26.4

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        68 VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      |+||||+||||++++++|++.|+   +++++.|.
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~---~~v~~~~~   32 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGI---TDILVVDN   32 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCC---ceEEEecC
Confidence            79999999999999999999886   45565554

>PRK07890 short chain dehydrogenase; Provisional

Probab=97.97  E-value=1.6e-05  Score=60.02  Aligned_cols=39  Identities=23%  Similarity=0.318  Sum_probs=34.8

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++.+++++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus         2 ~l~~k~vlItGa~~~IG~~la~~l~~~G~---~V~~~~r~~~   40 (258)
T PRK07890          2 LLKGKVVVVSGVGPGLGRTLAVRAARAGA---DVVLAARTAE   40 (258)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence            45789999999999999999999999987   7999998753

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=97.96  E-value=8.5e-06  Score=65.91  Aligned_cols=35  Identities=29%  Similarity=0.595  Sum_probs=32.0

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCc
Q psy3445          68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGK  105 (121)
Q Consensus        68 VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~  105 (121)
                      |+|||||||||++|+.+|.+.++   +|++++|++...
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh---~v~iltR~~~~~   35 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGH---QVTILTRRPPKA   35 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCC---eEEEEEcCCcch
Confidence            68999999999999999999988   799999987663

>PRK09186 flagellin modification protein A; Provisional

Probab=97.96  E-value=2e-05  Score=59.41  Aligned_cols=38  Identities=24%  Similarity=0.418  Sum_probs=34.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++|+++||||+|.||.+++++|++.|+   +|+++.|+..
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~---~v~~~~r~~~   39 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGG---IVIAADIDKE   39 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEecChH
Confidence            5789999999999999999999999987   7888888754

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=97.95  E-value=1.6e-05  Score=59.69  Aligned_cols=38  Identities=18%  Similarity=0.354  Sum_probs=33.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|+||++++++|++.++   +|+++.|+..
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l~~~g~---~v~~~~r~~~   38 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRFAEEGA---KVAVFDLNRE   38 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEecCCHH
Confidence            4689999999999999999999999987   7888888753

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=97.93  E-value=1.5e-05  Score=59.09  Aligned_cols=38  Identities=13%  Similarity=0.268  Sum_probs=33.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +.+++|+||||+|++|++++++|++.|+   +|+++.|++.
T Consensus         3 ~~~~~ilItGasg~iG~~l~~~l~~~g~---~v~~~~r~~~   40 (246)
T PRK05653          3 LQGKTALVTGASRGIGRAIALRLAADGA---KVVIYDSNEE   40 (246)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCChh
Confidence            3568999999999999999999999987   6999999754

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=97.93  E-value=1.5e-05  Score=61.97  Aligned_cols=35  Identities=43%  Similarity=0.681  Sum_probs=31.5

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+|+||||+||||+++++.|++.++   +|+++.|+..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~---~V~~~~r~~~   35 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGE---EVRVLVRPTS   35 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCC---EEEEEEecCc
Confidence            4799999999999999999999986   7999999654

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=97.93  E-value=1.9e-05  Score=58.66  Aligned_cols=38  Identities=16%  Similarity=0.287  Sum_probs=32.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|++|++++++|++.|+   +|+++.|+..
T Consensus         3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~---~v~~~~~~~~   40 (248)
T PRK05557          3 LEGKVALVTGASRGIGRAIAERLAAQGA---NVVINYASSE   40 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCch
Confidence            4678999999999999999999999987   6877777643

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=97.92  E-value=2e-05  Score=59.84  Aligned_cols=38  Identities=21%  Similarity=0.234  Sum_probs=33.9

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++++++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~---~v~~~~r~~   42 (260)
T PRK12823          5 RFAGKVVVVTGAAQGIGRGVALRAAAEGA---RVVLVDRSE   42 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCch
Confidence            36789999999999999999999999987   688888864

>PRK07774 short chain dehydrogenase; Provisional

Probab=97.92  E-value=2.1e-05  Score=59.15  Aligned_cols=38  Identities=26%  Similarity=0.348  Sum_probs=34.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|+||.+++++|++.|+   +|+++.|+..
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~---~vi~~~r~~~   41 (250)
T PRK07774          4 FDDKVAIVTGAAGGIGQAYAEALAREGA---SVVVADINAE   41 (250)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            4678999999999999999999999987   7999999753

>PRK12829 short chain dehydrogenase; Provisional

Probab=97.92  E-value=1.8e-05  Score=59.89  Aligned_cols=40  Identities=20%  Similarity=0.274  Sum_probs=35.4

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ..+++++++||||+|+||.+++++|++.|+   +|+++.|+..
T Consensus         7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~---~V~~~~r~~~   46 (264)
T PRK12829          7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGA---RVHVCDVSEA   46 (264)
T ss_pred             hccCCCEEEEeCCCCcHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            446889999999999999999999999987   6999999753

>PRK05717 oxidoreductase; Validated

Probab=97.92  E-value=1.8e-05  Score=60.20  Aligned_cols=38  Identities=16%  Similarity=0.042  Sum_probs=33.9

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++++++||||+|+||++++++|++.|.   +|+++.|+.
T Consensus         7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~---~v~~~~~~~   44 (255)
T PRK05717          7 GHNGRVALVTGAARGIGLGIAAWLIAEGW---QVVLADLDR   44 (255)
T ss_pred             ccCCCEEEEeCCcchHHHHHHHHHHHcCC---EEEEEcCCH
Confidence            56789999999999999999999999987   788887764

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=97.91  E-value=1.9e-05  Score=59.48  Aligned_cols=37  Identities=22%  Similarity=0.171  Sum_probs=33.6

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|+||.+++++|++.|+   +|+++.|+.
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~---~vi~~~r~~   39 (248)
T TIGR01832         3 LEGKVALVTGANTGLGQGIAVGLAEAGA---DIVGAGRSE   39 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCch
Confidence            5789999999999999999999999987   788888864

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=97.90  E-value=2.1e-05  Score=61.95  Aligned_cols=33  Identities=30%  Similarity=0.506  Sum_probs=29.2

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      |+|+|||||||||++++++|++.++   +|+++.|.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~~~   33 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGH---DVVILDNL   33 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCC---eEEEEecC
Confidence            5799999999999999999999987   68887764

>PRK08703 short chain dehydrogenase; Provisional

Probab=97.89  E-value=3.3e-05  Score=58.08  Aligned_cols=38  Identities=24%  Similarity=0.397  Sum_probs=34.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus         4 l~~k~vlItG~sggiG~~la~~l~~~g~---~V~~~~r~~~   41 (239)
T PRK08703          4 LSDKTILVTGASQGLGEQVAKAYAAAGA---TVILVARHQK   41 (239)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHcCC---EEEEEeCChH
Confidence            5679999999999999999999999987   7999999764

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=97.89  E-value=2.7e-05  Score=58.86  Aligned_cols=39  Identities=23%  Similarity=0.345  Sum_probs=35.1

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ..+++++++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~---~Vi~~~r~~   46 (247)
T PRK08945          8 DLLKDRIILVTGAGDGIGREAALTYARHGA---TVILLGRTE   46 (247)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCC---cEEEEeCCH
Confidence            456899999999999999999999999886   789999975

>PRK07326 short chain dehydrogenase; Provisional

Probab=97.88  E-value=2.9e-05  Score=57.96  Aligned_cols=37  Identities=22%  Similarity=0.353  Sum_probs=33.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.+++++||||+|++|++++++|++.+.   +|++++|++
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~---~V~~~~r~~   40 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGY---KVAITARDQ   40 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCC---EEEEeeCCH
Confidence            3578999999999999999999999876   799999975

>PRK07201 short chain dehydrogenase; Provisional

Probab=97.88  E-value=1.7e-05  Score=68.19  Aligned_cols=34  Identities=47%  Similarity=0.781  Sum_probs=29.7

Q ss_pred             CeEEEEcCCChHHHHHHHHHHH--hCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLR--AIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~--~~~~~~~V~~l~R~~  102 (121)
                      |+|+|||||||||++++++|++  .+.   +|++++|+.
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~---~V~~l~R~~   36 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREA---TVHVLVRRQ   36 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCC---EEEEEECcc
Confidence            5799999999999999999995  444   899999964

>PRK06138 short chain dehydrogenase; Provisional

Probab=97.88  E-value=3e-05  Score=58.24  Aligned_cols=38  Identities=16%  Similarity=0.207  Sum_probs=33.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|+||++++++|++.|.   +|+++.|+..
T Consensus         3 ~~~k~~lItG~sg~iG~~la~~l~~~G~---~v~~~~r~~~   40 (252)
T PRK06138          3 LAGRVAIVTGAGSGIGRATAKLFAREGA---RVVVADRDAE   40 (252)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCC---eEEEecCCHH
Confidence            4689999999999999999999999986   7899988753

>PRK06196 oxidoreductase; Provisional

Probab=97.88  E-value=2.7e-05  Score=61.53  Aligned_cols=38  Identities=24%  Similarity=0.300  Sum_probs=34.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++|+||||+|+||.+++++|++.|+   +|+++.|+..
T Consensus        24 l~~k~vlITGasggIG~~~a~~L~~~G~---~Vv~~~R~~~   61 (315)
T PRK06196         24 LSGKTAIVTGGYSGLGLETTRALAQAGA---HVIVPARRPD   61 (315)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            4679999999999999999999999987   7999999753

>PRK06057 short chain dehydrogenase; Provisional

Probab=97.87  E-value=2.5e-05  Score=59.42  Aligned_cols=39  Identities=13%  Similarity=0.084  Sum_probs=34.6

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+++++|+||||+|+||.++++++++.|+   +|+++.|+..
T Consensus         4 ~~~~~~vlItGasggIG~~~a~~l~~~G~---~v~~~~r~~~   42 (255)
T PRK06057          4 RLAGRVAVITGGGSGIGLATARRLAAEGA---TVVVGDIDPE   42 (255)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence            36789999999999999999999999987   7898988643

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=97.87  E-value=2.6e-05  Score=59.13  Aligned_cols=38  Identities=26%  Similarity=0.267  Sum_probs=34.2

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++|+++||||+|+||.+++++|++.|+   +|+++.|+..
T Consensus         8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~---~V~~~~r~~~   45 (255)
T PRK07523          8 LTGRRALVTGSSQGIGYALAEGLAQAGA---EVILNGRDPA   45 (255)
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence            5789999999999999999999999987   7889998753

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.87  E-value=4.3e-05  Score=56.68  Aligned_cols=37  Identities=22%  Similarity=0.316  Sum_probs=31.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++.++|+||||+|+||++++++|++.|+   +|+++.|..
T Consensus         4 ~~~~~vlItGasg~iG~~l~~~l~~~g~---~v~~~~~~~   40 (249)
T PRK12825          4 LMGRVALVTGAARGLGRAIALRLARAGA---DVVVHYRSD   40 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---eEEEEeCCC
Confidence            3568999999999999999999999987   577766654

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=97.87  E-value=1.7e-05  Score=64.83  Aligned_cols=33  Identities=33%  Similarity=0.568  Sum_probs=29.7

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ++||||||.||||||.+.+|++.|+   +|++++.-
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~---~vvV~DNL   33 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGH---EVVVLDNL   33 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCC---eEEEEecC
Confidence            5899999999999999999999998   68888763

>PRK06197 short chain dehydrogenase; Provisional

Probab=97.86  E-value=2.6e-05  Score=61.23  Aligned_cols=38  Identities=24%  Similarity=0.178  Sum_probs=34.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++|+||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus        14 ~~~k~vlItGas~gIG~~~a~~l~~~G~---~vi~~~r~~~   51 (306)
T PRK06197         14 QSGRVAVVTGANTGLGYETAAALAAKGA---HVVLAVRNLD   51 (306)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            4789999999999999999999999987   7888999743

>PLN00016 RNA-binding protein; Provisional

Probab=97.86  E-value=1.9e-05  Score=64.18  Aligned_cols=37  Identities=30%  Similarity=0.555  Sum_probs=33.4

Q ss_pred             cCCeEEEE----cCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVT----GGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVT----GatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ..++|+||    |||||||++++++|++.|+   +|++++|+..
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~---~V~~l~R~~~   91 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH---EVTLFTRGKE   91 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCC---EEEEEecCCc
Confidence            44789999    9999999999999999987   7999999754

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=97.85  E-value=1.6e-05  Score=63.04  Aligned_cols=35  Identities=34%  Similarity=0.566  Sum_probs=30.1

Q ss_pred             EEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          69 FVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        69 lVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +||||+||+|++|+++|+++++ ..+|.+++|....
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~-~~~Vr~~d~~~~~   35 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGY-IYEVRVLDRSPPP   35 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCC-ceEEEEccccccc
Confidence            6999999999999999999985 3589999886543

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PRK08628 short chain dehydrogenase; Provisional

Probab=97.84  E-value=3.8e-05  Score=58.27  Aligned_cols=39  Identities=23%  Similarity=0.307  Sum_probs=34.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++++++||||+|.||.+++++|++.|.   +|+++.|+...
T Consensus         5 l~~~~ilItGasggiG~~la~~l~~~G~---~v~~~~r~~~~   43 (258)
T PRK08628          5 LKDKVVIVTGGASGIGAAISLRLAEEGA---IPVIFGRSAPD   43 (258)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHcCC---cEEEEcCChhh
Confidence            5789999999999999999999999987   68888887654

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=97.83  E-value=3e-05  Score=61.75  Aligned_cols=34  Identities=24%  Similarity=0.590  Sum_probs=27.8

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ++|+|||||||||++++++|++.++.  .++++.|.
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~~--~v~~~~~~   35 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETSD--AVVVVDKL   35 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCCC--EEEEEecC
Confidence            58999999999999999999999863  34445543

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=97.83  E-value=3e-05  Score=58.26  Aligned_cols=36  Identities=17%  Similarity=0.136  Sum_probs=32.2

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++||||+|+||++++++|++.|+   +|+++.|+..
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~---~v~~~~r~~~   36 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGA---NVVVNDLGEA   36 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            46899999999999999999999987   7999999743

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK12827 short chain dehydrogenase; Provisional

Probab=97.83  E-value=5.5e-05  Score=56.47  Aligned_cols=36  Identities=22%  Similarity=0.403  Sum_probs=31.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +++++++||||+|+||.+++++|++.++   +|+++.|.
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~g~---~v~~~~~~   39 (249)
T PRK12827          4 LDSRRVLITGGSGGLGRAIAVRLAADGA---DVIVLDIH   39 (249)
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC---eEEEEcCc
Confidence            4678999999999999999999999987   67777764

>PRK05875 short chain dehydrogenase; Provisional

Probab=97.83  E-value=3.9e-05  Score=58.86  Aligned_cols=38  Identities=29%  Similarity=0.416  Sum_probs=34.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|+||++++++|++.|+   +|+++.|+..
T Consensus         5 ~~~k~vlItGasg~IG~~la~~l~~~G~---~V~~~~r~~~   42 (276)
T PRK05875          5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA---AVMIVGRNPD   42 (276)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---eEEEEeCCHH
Confidence            5789999999999999999999999987   7999998743

>PRK07035 short chain dehydrogenase; Provisional

Probab=97.83  E-value=4.2e-05  Score=57.79  Aligned_cols=38  Identities=18%  Similarity=0.274  Sum_probs=34.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|+||.+++++|++.|+   +|+++.|+..
T Consensus         6 l~~k~vlItGas~gIG~~l~~~l~~~G~---~Vi~~~r~~~   43 (252)
T PRK07035          6 LTGKIALVTGASRGIGEAIAKLLAQQGA---HVIVSSRKLD   43 (252)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            5789999999999999999999999987   7999998643

>PRK06914 short chain dehydrogenase; Provisional

Probab=97.83  E-value=2.9e-05  Score=59.65  Aligned_cols=38  Identities=16%  Similarity=0.141  Sum_probs=33.5

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++++++||||+|++|++++++|++.|+   +|++++|+...
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~---~V~~~~r~~~~   39 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGY---LVIATMRNPEK   39 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCC---EEEEEeCCHHH
Confidence            568899999999999999999999987   79999987543

>PRK06949 short chain dehydrogenase; Provisional

Probab=97.81  E-value=4.1e-05  Score=57.81  Aligned_cols=38  Identities=21%  Similarity=0.281  Sum_probs=34.2

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +.+++++||||+|+||++++++|++.+.   +|+++.|+..
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~---~Vi~~~r~~~   44 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGA---KVVLASRRVE   44 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            5789999999999999999999999886   7999999753

>PRK06523 short chain dehydrogenase; Provisional

Probab=97.80  E-value=3.3e-05  Score=58.67  Aligned_cols=38  Identities=29%  Similarity=0.366  Sum_probs=34.2

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++++++||||+|.||++++++|++.|.   +|+++.|+.
T Consensus         6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~---~v~~~~r~~   43 (260)
T PRK06523          6 ELAGKRALVTGGTKGIGAATVARLLEAGA---RVVTTARSR   43 (260)
T ss_pred             CCCCCEEEEECCCCchhHHHHHHHHHCCC---EEEEEeCCh
Confidence            46789999999999999999999999987   799999864

>PRK06500 short chain dehydrogenase; Provisional

Probab=97.80  E-value=3.8e-05  Score=57.59  Aligned_cols=37  Identities=19%  Similarity=0.295  Sum_probs=33.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|+||++++++|++.|.   +|+++.|+.
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~---~v~~~~r~~   40 (249)
T PRK06500          4 LQGKTALITGGTSGIGLETARQFLAEGA---RVAITGRDP   40 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEecCCH
Confidence            4678999999999999999999999987   688888864

>PRK07577 short chain dehydrogenase; Provisional

Probab=97.80  E-value=4.6e-05  Score=56.75  Aligned_cols=37  Identities=24%  Similarity=0.235  Sum_probs=33.0

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+++++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~---~v~~~~r~~~   38 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGH---QVIGIARSAI   38 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC---EEEEEeCCcc
Confidence            578999999999999999999999987   7999998643

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=97.80  E-value=4.2e-05  Score=58.16  Aligned_cols=37  Identities=27%  Similarity=0.339  Sum_probs=33.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|+||+++++.|++.|+   +|+++.|+.
T Consensus        10 ~~~k~ilItGa~g~IG~~la~~l~~~G~---~V~~~~r~~   46 (259)
T PRK08213         10 LSGKTALVTGGSRGLGLQIAEALGEAGA---RVVLSARKA   46 (259)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            4789999999999999999999999887   788888864

>PRK06172 short chain dehydrogenase; Provisional

Probab=97.80  E-value=5.2e-05  Score=57.33  Aligned_cols=38  Identities=21%  Similarity=0.300  Sum_probs=34.2

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus         5 l~~k~ilItGas~~iG~~ia~~l~~~G~---~v~~~~r~~~   42 (253)
T PRK06172          5 FSGKVALVTGGAAGIGRATALAFAREGA---KVVVADRDAA   42 (253)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence            5789999999999999999999999986   7999999754

>PRK08264 short chain dehydrogenase; Validated

Probab=97.79  E-value=3.8e-05  Score=57.49  Aligned_cols=39  Identities=28%  Similarity=0.447  Sum_probs=33.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +.+++++||||+|+||++++++|++.|..  +|+++.|+..
T Consensus         4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~--~V~~~~r~~~   42 (238)
T PRK08264          4 IKGKVVLVTGANRGIGRAFVEQLLARGAA--KVYAAARDPE   42 (238)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCcc--cEEEEecChh
Confidence            46789999999999999999999999863  6899998654

>PRK07814 short chain dehydrogenase; Provisional

Probab=97.79  E-value=4.3e-05  Score=58.56  Aligned_cols=37  Identities=19%  Similarity=0.268  Sum_probs=33.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~~~G~---~Vi~~~r~~   44 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFAEAGA---DVLIAARTE   44 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999987   799999974

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=97.79  E-value=3.2e-05  Score=61.51  Aligned_cols=33  Identities=24%  Similarity=0.586  Sum_probs=27.3

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      |+|+|||||||||++++++|++.+..  .|+++.|
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~~--~v~~~~~   33 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQD--SVVNVDK   33 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCCC--eEEEecC
Confidence            57999999999999999999998763  4555544

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.79  E-value=4.5e-05  Score=56.93  Aligned_cols=38  Identities=13%  Similarity=0.169  Sum_probs=33.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++|+||||+|+||+++++.|++.|.   +|+++.|+..
T Consensus         3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~---~V~~~~r~~~   40 (238)
T PRK05786          3 LKGKKVAIIGVSEGLGYAVAYFALKEGA---QVCINSRNEN   40 (238)
T ss_pred             cCCcEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            4678999999999999999999999987   7999999753

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.78  E-value=5.6e-05  Score=56.68  Aligned_cols=38  Identities=18%  Similarity=0.319  Sum_probs=33.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|+||.+++++|++.|.   +|++++|+..
T Consensus         5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~---~Vi~~~r~~~   42 (239)
T PRK07666          5 LQGKNALITGAGRGIGRAVAIALAKEGV---NVGLLARTEE   42 (239)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            4578999999999999999999999887   7999999753

>PRK12320 hypothetical protein; Provisional

Probab=97.77  E-value=3.4e-05  Score=68.77  Aligned_cols=34  Identities=21%  Similarity=0.324  Sum_probs=30.8

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+|+||||+||||++++++|++.|+   +|++++|..
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~---~Vi~ldr~~   34 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGH---TVSGIAQHP   34 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC---EEEEEeCCh
Confidence            5799999999999999999999987   799999853

>PRK05854 short chain dehydrogenase; Provisional

Probab=97.77  E-value=5.4e-05  Score=60.20  Aligned_cols=38  Identities=26%  Similarity=0.311  Sum_probs=34.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|.||.+++++|++.|.   +|++..|+..
T Consensus        12 l~gk~~lITGas~GIG~~~a~~La~~G~---~Vil~~R~~~   49 (313)
T PRK05854         12 LSGKRAVVTGASDGLGLGLARRLAAAGA---EVILPVRNRA   49 (313)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            5789999999999999999999999987   7999999754

>PRK08278 short chain dehydrogenase; Provisional

Probab=97.77  E-value=5e-05  Score=58.79  Aligned_cols=38  Identities=16%  Similarity=0.317  Sum_probs=33.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|+||++++++|++.|.   +|+++.|+..
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~~   41 (273)
T PRK08278          4 LSGKTLFITGASRGIGLAIALRAARDGA---NIVIAAKTAE   41 (273)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEecccc
Confidence            4678999999999999999999999987   7899998654

>PRK06180 short chain dehydrogenase; Provisional

Probab=97.77  E-value=4.7e-05  Score=58.86  Aligned_cols=37  Identities=22%  Similarity=0.214  Sum_probs=32.9

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+++++||||+|+||++++++|++.|.   +|+++.|+..
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~---~V~~~~r~~~   39 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGH---RVVGTVRSEA   39 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcC---EEEEEeCCHH
Confidence            467899999999999999999999987   7999999653

>PRK12939 short chain dehydrogenase; Provisional

Probab=97.77  E-value=6.6e-05  Score=56.18  Aligned_cols=38  Identities=18%  Similarity=0.159  Sum_probs=33.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|.||++++++|++.|+   +|+++.|+..
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~G~---~v~~~~r~~~   42 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEAGA---TVAFNDGLAA   42 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence            5689999999999999999999999987   6888888643

>PRK07063 short chain dehydrogenase; Provisional

Probab=97.76  E-value=6.8e-05  Score=57.02  Aligned_cols=38  Identities=16%  Similarity=0.160  Sum_probs=34.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus         5 l~~k~vlVtGas~gIG~~~a~~l~~~G~---~vv~~~r~~~   42 (260)
T PRK07063          5 LAGKVALVTGAAQGIGAAIARAFAREGA---AVALADLDAA   42 (260)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            5789999999999999999999999987   7888998643

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=97.76  E-value=5e-05  Score=57.67  Aligned_cols=38  Identities=13%  Similarity=0.227  Sum_probs=33.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +.+++++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~---~v~~~~r~~~   41 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGA---RVVIADIKPA   41 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC---EEEEEcCCHH
Confidence            5678999999999999999999999987   7888888754

>PRK09291 short chain dehydrogenase; Provisional

Probab=97.76  E-value=5.3e-05  Score=57.17  Aligned_cols=35  Identities=17%  Similarity=0.239  Sum_probs=31.7

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++||||+|.||.+++++|++.|.   +|++++|+.
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~---~v~~~~r~~   36 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGH---NVIAGVQIA   36 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            57899999999999999999999987   789999964

>PRK06482 short chain dehydrogenase; Provisional

Probab=97.76  E-value=5.2e-05  Score=58.26  Aligned_cols=35  Identities=26%  Similarity=0.364  Sum_probs=31.5

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++++||||+|+||++++++|++.|.   +|+++.|+.
T Consensus         2 ~k~vlVtGasg~IG~~la~~L~~~g~---~v~~~~r~~   36 (276)
T PRK06482          2 SKTWFITGASSGFGRGMTERLLARGD---RVAATVRRP   36 (276)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            36899999999999999999999987   799999864

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.75  E-value=6.4e-05  Score=57.21  Aligned_cols=36  Identities=22%  Similarity=0.251  Sum_probs=33.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +++++++||||+|.||.+++++|++.|.   +|+++.|+
T Consensus        13 l~~k~vlItGas~gIG~~ia~~l~~~G~---~v~~~~~~   48 (258)
T PRK06935         13 LDGKVAIVTGGNTGLGQGYAVALAKAGA---DIIITTHG   48 (258)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCC
Confidence            5789999999999999999999999987   68888887

>PRK05867 short chain dehydrogenase; Provisional

Probab=97.75  E-value=6.4e-05  Score=57.05  Aligned_cols=38  Identities=16%  Similarity=0.238  Sum_probs=34.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|.||.+++++|++.|+   +|++..|+..
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~---~V~~~~r~~~   44 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEAGA---QVAIAARHLD   44 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCCHH
Confidence            5789999999999999999999999987   7888888743

>PRK06841 short chain dehydrogenase; Provisional

Probab=97.75  E-value=5.6e-05  Score=57.09  Aligned_cols=38  Identities=24%  Similarity=0.334  Sum_probs=34.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus        13 ~~~k~vlItGas~~IG~~la~~l~~~G~---~Vi~~~r~~~   50 (255)
T PRK06841         13 LSGKVAVVTGGASGIGHAIAELFAAKGA---RVALLDRSED   50 (255)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            5789999999999999999999999987   7889998753

>PRK06179 short chain dehydrogenase; Provisional

Probab=97.75  E-value=5e-05  Score=58.05  Aligned_cols=37  Identities=27%  Similarity=0.317  Sum_probs=32.8

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++++++||||+|+||++++++|++.|.   +|+++.|+..
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~---~V~~~~r~~~   39 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGY---RVFGTSRNPA   39 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC---EEEEEeCChh
Confidence            467899999999999999999999987   7999999743

>PRK07856 short chain dehydrogenase; Provisional

Probab=97.75  E-value=4.9e-05  Score=57.68  Aligned_cols=37  Identities=27%  Similarity=0.307  Sum_probs=33.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|.||.+++++|++.+.   +|+++.|+.
T Consensus         4 ~~~k~~lItGas~gIG~~la~~l~~~g~---~v~~~~r~~   40 (252)
T PRK07856          4 LTGRVVLVTGGTRGIGAGIARAFLAAGA---TVVVCGRRA   40 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCh
Confidence            5789999999999999999999999987   688888864

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.74  E-value=5.8e-05  Score=56.69  Aligned_cols=36  Identities=19%  Similarity=0.319  Sum_probs=31.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +++++++||||+|+||++++++|++.++   +|++..|.
T Consensus         4 ~~~~~vlitGasg~iG~~l~~~l~~~g~---~v~~~~~~   39 (252)
T PRK06077          4 LKDKVVVVTGSGRGIGRAIAVRLAKEGS---LVVVNAKK   39 (252)
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCC
Confidence            3578999999999999999999999887   57666664

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=97.74  E-value=5.8e-05  Score=57.68  Aligned_cols=37  Identities=22%  Similarity=0.479  Sum_probs=33.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|.||.+++++|++.|.   +|+++.|+.
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~   39 (262)
T TIGR03325         3 LKGEVVLVTGGASGLGRAIVDRFVAEGA---RVAVLDKSA   39 (262)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            4689999999999999999999999987   788888864

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK12746 short chain dehydrogenase; Provisional

Probab=97.74  E-value=5.5e-05  Score=57.11  Aligned_cols=37  Identities=19%  Similarity=0.250  Sum_probs=30.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEE-ecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLL-VRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l-~R~~  102 (121)
                      +++++++||||+|+||++++++|++.|+   +|.++ .|+.
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~G~---~v~i~~~r~~   41 (254)
T PRK12746          4 LDGKVALVTGASRGIGRAIAMRLANDGA---LVAIHYGRNK   41 (254)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCCCH
Confidence            4678999999999999999999999987   56554 5653

>PRK09072 short chain dehydrogenase; Provisional

Probab=97.73  E-value=6.2e-05  Score=57.47  Aligned_cols=37  Identities=32%  Similarity=0.499  Sum_probs=33.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|+||.+++++|++.|+   +|+++.|+.
T Consensus         3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~---~V~~~~r~~   39 (263)
T PRK09072          3 LKDKRVLLTGASGGIGQALAEALAAAGA---RLLLVGRNA   39 (263)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEECCH
Confidence            3678999999999999999999999987   799999974

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=97.73  E-value=4e-05  Score=60.65  Aligned_cols=48  Identities=21%  Similarity=0.349  Sum_probs=36.2

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHHHHhh
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFE  116 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~e~~~  116 (121)
                      |+|+||||+|++|+++.++|...+.   .+++..|..-.....+.+.+++.
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~---~v~~~~r~~~dl~d~~~~~~~~~   48 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGY---EVIATSRSDLDLTDPEAVAKLLE   48 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSE---EEEEESTTCS-TTSHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCC---EEEEeCchhcCCCCHHHHHHHHH
Confidence            6899999999999999999998765   68888887544433444554443

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK07478 short chain dehydrogenase; Provisional

Probab=97.73  E-value=7.7e-05  Score=56.53  Aligned_cols=38  Identities=13%  Similarity=0.237  Sum_probs=34.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus         4 ~~~k~~lItGas~giG~~ia~~l~~~G~---~v~~~~r~~~   41 (254)
T PRK07478          4 LNGKVAIITGASSGIGRAAAKLFAREGA---KVVVGARRQA   41 (254)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            4688999999999999999999999987   7999999754

>PRK08219 short chain dehydrogenase; Provisional

Probab=97.73  E-value=5.5e-05  Score=55.86  Aligned_cols=35  Identities=20%  Similarity=0.357  Sum_probs=31.2

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .|+++||||+|++|++++++|++. +   +|+++.|+..
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~---~V~~~~r~~~   37 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-H---TLLLGGRPAE   37 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-C---CEEEEeCCHH
Confidence            478999999999999999999998 6   6999999743

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.73  E-value=6.1e-05  Score=56.82  Aligned_cols=35  Identities=26%  Similarity=0.251  Sum_probs=31.2

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +|+++||||+|+||++++++|++.++   +|+++.|..
T Consensus         2 ~k~vlItG~sg~iG~~la~~L~~~g~---~vi~~~r~~   36 (256)
T PRK12745          2 RPVALVTGGRRGIGLGIARALAAAGF---DLAINDRPD   36 (256)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCC---EEEEEecCc
Confidence            47899999999999999999999987   688888864

>PRK08263 short chain dehydrogenase; Provisional

Probab=97.73  E-value=6.4e-05  Score=57.97  Aligned_cols=37  Identities=19%  Similarity=0.235  Sum_probs=32.8

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+++|+||||+|+||++++++|++.+.   +|+++.|+..
T Consensus         2 ~~k~vlItGasg~iG~~~a~~l~~~g~---~V~~~~r~~~   38 (275)
T PRK08263          2 MEKVWFITGASRGFGRAWTEAALERGD---RVVATARDTA   38 (275)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            467999999999999999999999986   7999999743

>PRK08226 short chain dehydrogenase; Provisional

Probab=97.72  E-value=6.2e-05  Score=57.21  Aligned_cols=37  Identities=16%  Similarity=0.218  Sum_probs=33.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.+++++||||+|+||++++++|++.|.   +|+++.|+.
T Consensus         4 ~~~~~~lItG~s~giG~~la~~l~~~G~---~Vv~~~r~~   40 (263)
T PRK08226          4 LTGKTALITGALQGIGEGIARVFARHGA---NLILLDISP   40 (263)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEecCCH
Confidence            4679999999999999999999999987   688888874

>PRK06398 aldose dehydrogenase; Validated

Probab=97.72  E-value=6.9e-05  Score=57.45  Aligned_cols=38  Identities=24%  Similarity=0.346  Sum_probs=33.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|.||.+++++|++.|+   +|+++.|+..
T Consensus         4 l~gk~vlItGas~gIG~~ia~~l~~~G~---~Vi~~~r~~~   41 (258)
T PRK06398          4 LKDKVAIVTGGSQGIGKAVVNRLKEEGS---NVINFDIKEP   41 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeCCcc
Confidence            5789999999999999999999999987   6888888643

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=97.72  E-value=6.5e-05  Score=56.53  Aligned_cols=37  Identities=19%  Similarity=0.235  Sum_probs=33.2

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|+||++++++|++.|+   +|+++.|+.
T Consensus         6 ~~~k~vlItGas~~iG~~la~~l~~~G~---~v~~~~~~~   42 (252)
T PRK08220          6 FSGKTVWVTGAAQGIGYAVALAFVEAGA---KVIGFDQAF   42 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEecch
Confidence            5789999999999999999999999987   788888764

>PRK06182 short chain dehydrogenase; Validated

Probab=97.72  E-value=6.6e-05  Score=57.72  Aligned_cols=37  Identities=22%  Similarity=0.253  Sum_probs=33.2

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++++++||||+|+||.+++++|++.|+   +|+++.|+.+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~---~V~~~~r~~~   38 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGY---TVYGAARRVD   38 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            578999999999999999999999987   7999999753

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=97.71  E-value=6.8e-05  Score=59.35  Aligned_cols=37  Identities=22%  Similarity=0.282  Sum_probs=33.0

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+++++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~---~V~~~~r~~~   41 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGW---HVIMACRNLK   41 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            578999999999999999999999986   7898998643

>PRK05876 short chain dehydrogenase; Provisional

Probab=97.70  E-value=7.9e-05  Score=58.03  Aligned_cols=37  Identities=22%  Similarity=0.218  Sum_probs=33.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|+||++++++|++.|.   +|++..|+.
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~---~Vv~~~r~~   40 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGA---RVVLGDVDK   40 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999987   688888874

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=97.70  E-value=4.6e-05  Score=59.15  Aligned_cols=33  Identities=33%  Similarity=0.518  Sum_probs=28.3

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        68 VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+|||||||||++++++|++.++.  .|+++.|..
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~--~v~~~~~~~   33 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGIT--DILVVDNLR   33 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCc--eEEEEecCC
Confidence            689999999999999999999863  577777654

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=97.70  E-value=9.1e-05  Score=56.15  Aligned_cols=38  Identities=16%  Similarity=0.190  Sum_probs=33.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +.+++++||||+|.||.+++++|++.|.   +|++..|+..
T Consensus         7 l~~k~~lItGas~giG~~ia~~L~~~G~---~vvl~~r~~~   44 (254)
T PRK08085          7 LAGKNILITGSAQGIGFLLATGLAEYGA---EIIINDITAE   44 (254)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCC---EEEEEcCCHH
Confidence            4689999999999999999999999987   7888888743

>PRK05866 short chain dehydrogenase; Provisional

Probab=97.70  E-value=7.8e-05  Score=58.76  Aligned_cols=38  Identities=16%  Similarity=0.279  Sum_probs=34.2

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++++++||||+|.||.+++++|++.|.   +|+++.|+.
T Consensus        37 ~~~~k~vlItGasggIG~~la~~La~~G~---~Vi~~~R~~   74 (293)
T PRK05866         37 DLTGKRILLTGASSGIGEAAAEQFARRGA---TVVAVARRE   74 (293)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            35779999999999999999999999987   799999975

>PRK07102 short chain dehydrogenase; Provisional

Probab=97.69  E-value=7.2e-05  Score=56.34  Aligned_cols=35  Identities=17%  Similarity=0.319  Sum_probs=32.0

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+++||||+|+||.++++.|++.|.   +|++++|+..
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~---~Vi~~~r~~~   36 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA---RLYLAARDVE   36 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC---EEEEEeCCHH
Confidence            6899999999999999999999987   7999999754

>PRK07062 short chain dehydrogenase; Provisional

Probab=97.69  E-value=0.0001  Score=56.16  Aligned_cols=38  Identities=29%  Similarity=0.338  Sum_probs=34.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus         6 l~~k~~lItGas~giG~~ia~~l~~~G~---~V~~~~r~~~   43 (265)
T PRK07062          6 LEGRVAVVTGGSSGIGLATVELLLEAGA---SVAICGRDEE   43 (265)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC---eEEEEeCCHH
Confidence            5789999999999999999999999987   6999999754

>PRK08643 acetoin reductase; Validated

Probab=97.67  E-value=0.00012  Score=55.52  Aligned_cols=36  Identities=14%  Similarity=0.180  Sum_probs=32.4

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +|+++||||+|+||.+++++|++.|+   +|+++.|+..
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~---~v~~~~r~~~   37 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGF---KVAIVDYNEE   37 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            68999999999999999999999987   7899998753

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=97.67  E-value=8.2e-05  Score=68.97  Aligned_cols=48  Identities=35%  Similarity=0.560  Sum_probs=37.4

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCC-CccEEEEEecCCCCccHHHHHH
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIP-HLKHIYLLVRPKKGKAVQERLE  112 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~-~~~~V~~l~R~~~~~~~~~r~~  112 (121)
                      .++|+|||||||+|++++++|++.+. ...+|++++|........+++.
T Consensus       971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~ 1019 (1389)
T TIGR03443       971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLR 1019 (1389)
T ss_pred             CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHH
Confidence            47899999999999999999998861 1248999999866544444543

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.67  E-value=6.7e-05  Score=65.66  Aligned_cols=41  Identities=27%  Similarity=0.301  Sum_probs=36.0

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +..++++|+||||+|+||++++++|++.|+   +|++++|+...
T Consensus        76 ~~~~gKvVLVTGATGgIG~aLAr~LLk~G~---~Vval~Rn~ek  116 (576)
T PLN03209         76 DTKDEDLAFVAGATGKVGSRTVRELLKLGF---RVRAGVRSAQR  116 (576)
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCC---eEEEEeCCHHH
Confidence            445789999999999999999999999987   79999997543

>PRK06114 short chain dehydrogenase; Provisional

Probab=97.66  E-value=0.00018  Score=54.77  Aligned_cols=38  Identities=21%  Similarity=0.234  Sum_probs=34.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus         6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G~---~v~~~~r~~~   43 (254)
T PRK06114          6 LDGQVAFVTGAGSGIGQRIAIGLAQAGA---DVALFDLRTD   43 (254)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCcc
Confidence            5789999999999999999999999987   7888888643

>PRK06128 oxidoreductase; Provisional

Probab=97.66  E-value=0.00013  Score=57.32  Aligned_cols=38  Identities=18%  Similarity=0.235  Sum_probs=32.6

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+++||||+|+||.+++++|++.|.   +|++..|+.
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~---~V~i~~~~~   89 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGA---DIALNYLPE   89 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCC---EEEEEeCCc
Confidence            36789999999999999999999999987   577666653

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=97.66  E-value=6.3e-05  Score=58.15  Aligned_cols=23  Identities=35%  Similarity=0.475  Sum_probs=21.2

Q ss_pred             EEEcCCChHHHHHHHHHHHhCCC
Q psy3445          69 FVTGGTGFMGKILVEKLLRAIPH   91 (121)
Q Consensus        69 lVTGatGfIGs~ll~~Ll~~~~~   91 (121)
                      +|||||||||++++++|++.++.
T Consensus         1 lItGa~GfiG~~l~~~L~~~g~~   23 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEALGFT   23 (306)
T ss_pred             CcccCCCcccHHHHHHHHhCCCc
Confidence            69999999999999999998873

>PLN02253 xanthoxin dehydrogenase

Probab=97.66  E-value=9.1e-05  Score=57.03  Aligned_cols=38  Identities=16%  Similarity=0.218  Sum_probs=33.8

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++++++||||+|+||.+++++|++.|.   +|+++.|..
T Consensus        15 ~l~~k~~lItGas~gIG~~la~~l~~~G~---~v~~~~~~~   52 (280)
T PLN02253         15 RLLGKVALVTGGATGIGESIVRLFHKHGA---KVCIVDLQD   52 (280)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            46789999999999999999999999987   788888864

>PRK06701 short chain dehydrogenase; Provisional

Probab=97.66  E-value=0.00016  Score=56.75  Aligned_cols=39  Identities=13%  Similarity=0.238  Sum_probs=34.7

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ..+++++++||||+|+||.+++++|++.|.   +|+++.|..
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~---~V~l~~r~~   80 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGA---DIAIVYLDE   80 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            466789999999999999999999999987   788888864

>PRK08589 short chain dehydrogenase; Validated

Probab=97.66  E-value=8.7e-05  Score=57.32  Aligned_cols=36  Identities=11%  Similarity=0.119  Sum_probs=33.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +++++++||||+|.||.+++++|++.|.   +|+++.|+
T Consensus         4 l~~k~vlItGas~gIG~aia~~l~~~G~---~vi~~~r~   39 (272)
T PRK08589          4 LENKVAVITGASTGIGQASAIALAQEGA---YVLAVDIA   39 (272)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCc
Confidence            5689999999999999999999999987   79999987

>PRK07825 short chain dehydrogenase; Provisional

Probab=97.65  E-value=9.5e-05  Score=56.72  Aligned_cols=38  Identities=18%  Similarity=0.146  Sum_probs=33.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|.||.+++++|++.|.   +|++..|+..
T Consensus         3 ~~~~~ilVtGasggiG~~la~~l~~~G~---~v~~~~r~~~   40 (273)
T PRK07825          3 LRGKVVAITGGARGIGLATARALAALGA---RVAIGDLDEA   40 (273)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            4578999999999999999999999987   6888888643

>PRK08265 short chain dehydrogenase; Provisional

Probab=97.65  E-value=0.00013  Score=56.01  Aligned_cols=38  Identities=18%  Similarity=0.310  Sum_probs=34.2

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~~   41 (261)
T PRK08265          4 LAGKVAIVTGGATLIGAAVARALVAAGA---RVAIVDIDAD   41 (261)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            4689999999999999999999999987   7999999753

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.65  E-value=9.1e-05  Score=55.23  Aligned_cols=37  Identities=19%  Similarity=0.289  Sum_probs=32.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEE-ecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLL-VRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l-~R~~  102 (121)
                      +.+++++||||+|+||++++++|++.++   +|+++ .|+.
T Consensus         3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~---~v~~~~~r~~   40 (247)
T PRK05565          3 LMGKVAIVTGASGGIGRAIAELLAKEGA---KVVIAYDINE   40 (247)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEcCCCH
Confidence            4678999999999999999999999877   67777 7764

>PRK07023 short chain dehydrogenase; Provisional

Probab=97.65  E-value=8.7e-05  Score=55.90  Aligned_cols=35  Identities=26%  Similarity=0.341  Sum_probs=31.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus         2 ~~vlItGasggiG~~ia~~l~~~G~---~v~~~~r~~~   36 (243)
T PRK07023          2 VRAIVTGHSRGLGAALAEQLLQPGI---AVLGVARSRH   36 (243)
T ss_pred             ceEEEecCCcchHHHHHHHHHhCCC---EEEEEecCcc
Confidence            5899999999999999999999987   6888888643

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=97.64  E-value=8.5e-05  Score=56.33  Aligned_cols=35  Identities=20%  Similarity=0.307  Sum_probs=31.5

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+++||||+|+||.+++++|++.|+   +|+++.|++.
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~---~V~~~~r~~~   35 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGH---KVIATGRRQE   35 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            5799999999999999999999987   7999999753

>PRK07060 short chain dehydrogenase; Provisional

Probab=97.64  E-value=0.0001  Score=55.11  Aligned_cols=37  Identities=24%  Similarity=0.310  Sum_probs=33.6

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|+||.++++.|++.++   +|+++.|+.
T Consensus         7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~---~V~~~~r~~   43 (245)
T PRK07060          7 FSGKSVLVTGASSGIGRACAVALAQRGA---RVVAAARNA   43 (245)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5788999999999999999999999987   799999974

>PRK07074 short chain dehydrogenase; Provisional

Probab=97.64  E-value=0.0001  Score=55.85  Aligned_cols=36  Identities=25%  Similarity=0.351  Sum_probs=32.2

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++||||+|+||.+++++|++.|.   +|++++|+..
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~---~v~~~~r~~~   37 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGD---RVLALDIDAA   37 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            57899999999999999999999886   7999999753

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=97.64  E-value=6.9e-05  Score=57.74  Aligned_cols=34  Identities=32%  Similarity=0.656  Sum_probs=28.4

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +|+|||||||||++++++|++.++. .+|+++.|.
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~-~~v~~~~~~   34 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPD-AEVIVLDKL   34 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            5899999999999999999998742 268888763

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=97.64  E-value=0.00013  Score=56.19  Aligned_cols=37  Identities=27%  Similarity=0.516  Sum_probs=33.6

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|.||.+++++|++.|.   +|+++.|+.
T Consensus         8 ~~~k~vlVtGas~giG~~ia~~l~~~G~---~V~~~~r~~   44 (278)
T PRK08277          8 LKGKVAVITGGGGVLGGAMAKELARAGA---KVAILDRNQ   44 (278)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            4789999999999999999999999987   788999874

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=97.63  E-value=0.00011  Score=56.16  Aligned_cols=38  Identities=26%  Similarity=0.472  Sum_probs=34.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|.||.+++++|++.|+   +|+++.|+..
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~---~V~~~~r~~~   41 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGA---RVAVLERSAE   41 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            5789999999999999999999999987   6888998743

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=97.63  E-value=0.00012  Score=55.91  Aligned_cols=38  Identities=21%  Similarity=0.242  Sum_probs=33.4

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++++++||||+|.||.+++++|++.|.   +|+++.|+.
T Consensus         6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~---~v~~~~~~~   43 (266)
T PRK06171          6 NLQGKIIIVTGGSSGIGLAIVKELLANGA---NVVNADIHG   43 (266)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            35789999999999999999999999987   688877764

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.63  E-value=0.00011  Score=54.88  Aligned_cols=37  Identities=19%  Similarity=0.322  Sum_probs=33.2

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|+||.++++.|++.++   +|+++.|+.
T Consensus         3 l~~k~~lVtGas~~iG~~ia~~l~~~G~---~v~~~~r~~   39 (235)
T PRK06550          3 FMTKTVLITGAASGIGLAQARAFLAQGA---QVYGVDKQD   39 (235)
T ss_pred             CCCCEEEEcCCCchHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            5789999999999999999999999987   688888864

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=97.62  E-value=0.00011  Score=55.54  Aligned_cols=37  Identities=22%  Similarity=0.218  Sum_probs=34.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|+||++++++|++.|.   +|+++.|+.
T Consensus         9 ~~~k~ilItGas~~IG~~la~~l~~~G~---~v~~~~r~~   45 (256)
T PRK06124          9 LAGQVALVTGSARGLGFEIARALAGAGA---HVLVNGRNA   45 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCC---eEEEEeCCH
Confidence            5789999999999999999999999886   799999974

>PRK12367 short chain dehydrogenase; Provisional

Probab=97.62  E-value=0.00013  Score=56.45  Aligned_cols=39  Identities=21%  Similarity=0.318  Sum_probs=34.6

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ..+++++++||||+|.||.+++++|++.|.   +|+++.|+.
T Consensus        10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~---~Vi~~~r~~   48 (245)
T PRK12367         10 STWQGKRIGITGASGALGKALTKAFRAKGA---KVIGLTHSK   48 (245)
T ss_pred             HhhCCCEEEEEcCCcHHHHHHHHHHHHCCC---EEEEEECCc
Confidence            346789999999999999999999999987   788888865

>PRK06101 short chain dehydrogenase; Provisional

Probab=97.62  E-value=0.00011  Score=55.59  Aligned_cols=34  Identities=24%  Similarity=0.241  Sum_probs=31.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~---~V~~~~r~~   35 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW---QVIACGRNQ   35 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC---EEEEEECCH
Confidence            6799999999999999999999987   799999964

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=97.62  E-value=0.00011  Score=54.75  Aligned_cols=37  Identities=19%  Similarity=0.166  Sum_probs=31.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|+||++++++|++.+.   .|++..|+.
T Consensus         4 ~~~~~vlItGa~g~iG~~la~~l~~~g~---~v~~~~~~~   40 (245)
T PRK12936          4 LSGRKALVTGASGGIGEEIARLLHAQGA---IVGLHGTRV   40 (245)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            4678999999999999999999999986   677777753

>PRK08251 short chain dehydrogenase; Provisional

Probab=97.62  E-value=0.00012  Score=55.05  Aligned_cols=36  Identities=14%  Similarity=0.238  Sum_probs=32.1

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++||||+|.||.+++++|++.+.   +|+++.|+..
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~---~v~~~~r~~~   37 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGR---DLALCARRTD   37 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence            57899999999999999999999976   7888898753

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.62  E-value=0.00011  Score=55.25  Aligned_cols=37  Identities=24%  Similarity=0.340  Sum_probs=30.6

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEE-EecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYL-LVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~-l~R~~  102 (121)
                      +.+++++||||+|+||.+++++|++.|+   +|++ ..|+.
T Consensus         2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~---~v~~~~~r~~   39 (250)
T PRK08063          2 FSGKVALVTGSSRGIGKAIALRLAEEGY---DIAVNYARSR   39 (250)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCCCH
Confidence            3578999999999999999999999987   4554 56654

>PRK08177 short chain dehydrogenase; Provisional

Probab=97.62  E-value=0.00012  Score=54.78  Aligned_cols=36  Identities=22%  Similarity=0.262  Sum_probs=32.5

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++++||||+|++|++++++|++.|+   +|+++.|+...
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~---~V~~~~r~~~~   37 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW---QVTATVRGPQQ   37 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC---EEEEEeCCCcc
Confidence            6799999999999999999999987   79999997654

>PRK12742 oxidoreductase; Provisional

Probab=97.61  E-value=0.00011  Score=54.74  Aligned_cols=36  Identities=19%  Similarity=0.360  Sum_probs=31.2

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +++++|+||||+|.||.+++++|++.|.   +|++..|.
T Consensus         4 ~~~k~vlItGasggIG~~~a~~l~~~G~---~v~~~~~~   39 (237)
T PRK12742          4 FTGKKVLVLGGSRGIGAAIVRRFVTDGA---NVRFTYAG   39 (237)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEecCC
Confidence            4689999999999999999999999987   57766653

>PRK09242 tropinone reductase; Provisional

Probab=97.61  E-value=0.00014  Score=55.18  Aligned_cols=37  Identities=14%  Similarity=0.319  Sum_probs=33.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|.||.+++++|++.|+   +|+++.|+.
T Consensus         7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~---~v~~~~r~~   43 (257)
T PRK09242          7 LDGQTALITGASKGIGLAIAREFLGLGA---DVLIVARDA   43 (257)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            5789999999999999999999999987   799999874

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.61  E-value=0.00012  Score=55.06  Aligned_cols=35  Identities=20%  Similarity=0.362  Sum_probs=30.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      +++++++||||+|+||+++++.|++.|+   +|++..|
T Consensus         3 l~~k~ilItGas~gIG~~la~~l~~~G~---~vv~~~~   37 (253)
T PRK08642          3 ISEQTVLVTGGSRGLGAAIARAFAREGA---RVVVNYH   37 (253)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCC---eEEEEcC
Confidence            4678999999999999999999999987   5666554

>PRK08267 short chain dehydrogenase; Provisional

Probab=97.60  E-value=9.2e-05  Score=56.30  Aligned_cols=35  Identities=14%  Similarity=0.089  Sum_probs=31.5

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~---~V~~~~r~~~   36 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW---RVGAYDINEA   36 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC---eEEEEeCCHH
Confidence            6799999999999999999999987   7999998754

>PRK12937 short chain dehydrogenase; Provisional

Probab=97.60  E-value=0.00012  Score=54.73  Aligned_cols=36  Identities=14%  Similarity=0.142  Sum_probs=31.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +++++++||||+|+||++++++|++.++   +++++.|+
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~---~v~~~~~~   38 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGF---AVAVNYAG   38 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEecCC
Confidence            4679999999999999999999999987   56666664

>PRK07775 short chain dehydrogenase; Provisional

Probab=97.59  E-value=0.00013  Score=56.42  Aligned_cols=37  Identities=19%  Similarity=0.078  Sum_probs=32.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.++++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~---~V~~~~r~~   44 (274)
T PRK07775          8 PDRRPALVAGASSGIGAATAIELAAAGF---PVALGARRV   44 (274)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            3557999999999999999999999987   688888864

>PRK08017 oxidoreductase; Provisional

Probab=97.59  E-value=0.00013  Score=55.04  Aligned_cols=35  Identities=23%  Similarity=0.187  Sum_probs=31.3

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++++||||+|+||.++++.|++.|.   +|+++.|+..
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~---~v~~~~r~~~   37 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY---RVLAACRKPD   37 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            6899999999999999999999987   7888898753

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.59  E-value=0.00013  Score=56.44  Aligned_cols=37  Identities=16%  Similarity=0.220  Sum_probs=32.8

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+++|+||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~---~Vi~~~r~~~   39 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGW---RVFATCRKEE   39 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            367899999999999999999999987   7999999753

>PRK06924 short chain dehydrogenase; Provisional

Probab=97.59  E-value=0.00013  Score=55.02  Aligned_cols=34  Identities=24%  Similarity=0.404  Sum_probs=31.0

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+++||||+|+||++++++|++.|+   +|+++.|..
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~---~V~~~~r~~   35 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGT---HVISISRTE   35 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCC---EEEEEeCCc
Confidence            5799999999999999999999987   788899875

>PRK07454 short chain dehydrogenase; Provisional

Probab=97.58  E-value=0.00014  Score=54.64  Aligned_cols=37  Identities=19%  Similarity=0.235  Sum_probs=33.0

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +.++++||||+|.+|.+++++|++.|.   +|+++.|+..
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~---~V~~~~r~~~   41 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGW---DLALVARSQD   41 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            457899999999999999999999987   7999999753

>PRK09134 short chain dehydrogenase; Provisional

Probab=97.58  E-value=0.00013  Score=55.55  Aligned_cols=35  Identities=14%  Similarity=0.144  Sum_probs=30.3

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+|+++||||+|+||.+++++|++.|.   +|+++.|.
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~---~v~~~~~~   42 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGF---DVAVHYNR   42 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCC
Confidence            578999999999999999999999886   57666653

>PRK07576 short chain dehydrogenase; Provisional

Probab=97.58  E-value=0.00014  Score=55.94  Aligned_cols=38  Identities=24%  Similarity=0.339  Sum_probs=34.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus         7 ~~~k~ilItGasggIG~~la~~l~~~G~---~V~~~~r~~~   44 (264)
T PRK07576          7 FAGKNVVVVGGTSGINLGIAQAFARAGA---NVAVASRSQE   44 (264)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            5789999999999999999999999987   6999998743

>PRK12747 short chain dehydrogenase; Provisional

Probab=97.58  E-value=0.00013  Score=55.15  Aligned_cols=35  Identities=14%  Similarity=0.268  Sum_probs=30.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|++..+
T Consensus         2 ~~~k~~lItGas~gIG~~ia~~l~~~G~---~v~~~~~   36 (252)
T PRK12747          2 LKGKVALVTGASRGIGRAIAKRLANDGA---LVAIHYG   36 (252)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC---eEEEEcC
Confidence            5689999999999999999999999987   5766543

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=97.58  E-value=0.00014  Score=55.11  Aligned_cols=36  Identities=17%  Similarity=0.178  Sum_probs=32.2

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++||||+|+||+++++.|++.++   +|+++.|+..
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~---~vi~~~r~~~   37 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGY---RVAVADINSE   37 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            57899999999999999999999987   7888888754

>PRK06181 short chain dehydrogenase; Provisional

Probab=97.57  E-value=0.00014  Score=55.30  Aligned_cols=35  Identities=29%  Similarity=0.417  Sum_probs=31.5

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++||||+|+||.+++++|++.++   +|++++|+.
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~---~Vi~~~r~~   35 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGA---QLVLAARNE   35 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            46899999999999999999999886   799999874

>PRK07024 short chain dehydrogenase; Provisional

Probab=97.57  E-value=0.00015  Score=55.29  Aligned_cols=35  Identities=26%  Similarity=0.391  Sum_probs=31.6

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++|+||||+|+||.+++++|++.|+   +|++++|+.
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~---~v~~~~r~~   36 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA---TLGLVARRT   36 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            47899999999999999999999987   789999864

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=97.56  E-value=0.00015  Score=55.07  Aligned_cols=37  Identities=14%  Similarity=0.120  Sum_probs=33.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++|+||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         9 l~~k~vlVtG~s~gIG~~la~~l~~~G~---~vv~~~r~~   45 (255)
T PRK06113          9 LDGKCAIITGAGAGIGKEIAITFATAGA---SVVVSDINA   45 (255)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeCCH
Confidence            5789999999999999999999999987   688888864

>PRK07904 short chain dehydrogenase; Provisional

Probab=97.56  E-value=0.00016  Score=55.63  Aligned_cols=39  Identities=23%  Similarity=0.455  Sum_probs=33.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ..+++|+||||+|.||.+++++|++.+..  +|+++.|+..
T Consensus         6 ~~~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~   44 (253)
T PRK07904          6 GNPQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDD   44 (253)
T ss_pred             CCCcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcc
Confidence            35789999999999999999999998522  7999999765

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.56  E-value=6.4e-05  Score=58.01  Aligned_cols=39  Identities=18%  Similarity=0.291  Sum_probs=35.2

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccH
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAV  107 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~  107 (121)
                      |+|.|.||+|-+|++|++..+++|+   +|++++|++.+..+
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGH---eVTAivRn~~K~~~   39 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGH---EVTAIVRNASKLAA   39 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCC---eeEEEEeChHhccc
Confidence            6899999999999999999999998   79999999776543

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=97.55  E-value=0.00027  Score=53.15  Aligned_cols=35  Identities=20%  Similarity=0.280  Sum_probs=30.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      +++++++||||+|+||++++++|++.+.   +|+++.+
T Consensus         4 ~~~~~~lItG~s~~iG~~la~~l~~~g~---~v~~~~~   38 (247)
T PRK12935          4 LNGKVAIVTGGAKGIGKAITVALAQEGA---KVVINYN   38 (247)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCC---EEEEEcC
Confidence            4679999999999999999999999987   5665544

>PRK05650 short chain dehydrogenase; Provisional

Probab=97.54  E-value=0.00019  Score=55.02  Aligned_cols=35  Identities=17%  Similarity=0.202  Sum_probs=31.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+++||||+|.||.+++++|++.+.   +|++..|+..
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~---~V~~~~r~~~   35 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGW---RLALADVNEE   35 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            4799999999999999999999987   7888888753

>PRK07985 oxidoreductase; Provisional

Probab=97.54  E-value=0.00026  Score=55.76  Aligned_cols=37  Identities=22%  Similarity=0.326  Sum_probs=32.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|.||.+++++|++.|.   +|++..|+.
T Consensus        47 ~~~k~vlITGas~gIG~aia~~L~~~G~---~Vi~~~~~~   83 (294)
T PRK07985         47 LKDRKALVTGGDSGIGRAAAIAYAREGA---DVAISYLPV   83 (294)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCC---EEEEecCCc
Confidence            6789999999999999999999999987   677777654

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=97.54  E-value=0.00022  Score=54.56  Aligned_cols=38  Identities=13%  Similarity=0.144  Sum_probs=33.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus         8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~---~vv~~~~~~~   45 (265)
T PRK07097          8 LKGKIALITGASYGIGFAIAKAYAKAGA---TIVFNDINQE   45 (265)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---eEEEEeCCHH
Confidence            4679999999999999999999999987   6888888653

>PRK08339 short chain dehydrogenase; Provisional

Probab=97.54  E-value=0.00018  Score=55.47  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=34.2

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++|+++||||+|.||.+++++|++.|.   +|++..|+..
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~---~V~~~~r~~~   43 (263)
T PRK08339          6 LSGKLAFTTASSKGIGFGVARVLARAGA---DVILLSRNEE   43 (263)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            5789999999999999999999999987   7888898743

>PRK12744 short chain dehydrogenase; Provisional

Probab=97.54  E-value=0.00026  Score=53.87  Aligned_cols=36  Identities=14%  Similarity=0.283  Sum_probs=30.6

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +++++++||||+|+||.+++++|++.|.   +|+++.+.
T Consensus         6 l~~k~vlItGa~~gIG~~~a~~l~~~G~---~vv~i~~~   41 (257)
T PRK12744          6 LKGKVVLIAGGAKNLGGLIARDLAAQGA---KAVAIHYN   41 (257)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC---cEEEEecC
Confidence            4679999999999999999999999987   55666553

>PRK05693 short chain dehydrogenase; Provisional

Probab=97.54  E-value=0.00016  Score=55.62  Aligned_cols=34  Identities=21%  Similarity=0.315  Sum_probs=31.0

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~---~V~~~~r~~   35 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY---EVWATARKA   35 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6899999999999999999999987   799999874

>PRK06198 short chain dehydrogenase; Provisional

Probab=97.53  E-value=0.00019  Score=54.38  Aligned_cols=40  Identities=18%  Similarity=0.204  Sum_probs=34.5

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+++++++||||+|.||++++++|++.|..  .|+++.|+..
T Consensus         3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~--~V~~~~r~~~   42 (260)
T PRK06198          3 RLDGKVALVTGGTQGLGAAIARAFAERGAA--GLVICGRNAE   42 (260)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCC--eEEEEcCCHH
Confidence            367899999999999999999999999872  4999998743

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=97.51  E-value=0.00033  Score=53.40  Aligned_cols=37  Identities=16%  Similarity=0.353  Sum_probs=32.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|.||.+++++|++.+.   +|++..|+.
T Consensus         5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~---~vvi~~~~~   41 (261)
T PRK08936          5 LEGKVVVITGGSTGLGRAMAVRFGKEKA---KVVINYRSD   41 (261)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCC
Confidence            5789999999999999999999999986   677777743

>KOG1371|consensus

Probab=97.51  E-value=0.00017  Score=59.46  Aligned_cols=49  Identities=22%  Similarity=0.335  Sum_probs=35.4

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC-CCCccHHHHHHHHhh
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP-KKGKAVQERLEAIFE  116 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~-~~~~~~~~r~~e~~~  116 (121)
                      +++|+||||.||||+|.+-+|++.|+   .|++++.- .....+..|+.+++.
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy---~v~~vDNl~n~~~~sl~r~~~l~~   51 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGY---GVVIVDNLNNSYLESLKRVRQLLG   51 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCC---cEEEEecccccchhHHHHHHHhcC
Confidence            57899999999999999999999998   57776642 112223445554443

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=97.47  E-value=0.00019  Score=55.38  Aligned_cols=32  Identities=31%  Similarity=0.571  Sum_probs=27.7

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +|+||||||+||++++++|++.++   +|+++.|.
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~---~V~~~~~~   32 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGH---EVVVLDNL   32 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCC---eEEEEeCC
Confidence            589999999999999999999987   67776653

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.47  E-value=0.00024  Score=53.92  Aligned_cols=36  Identities=28%  Similarity=0.520  Sum_probs=31.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +++|+++||||+|.||.+++++|++.|+   +|+++.|.
T Consensus         5 l~~k~~lItGas~gIG~~~a~~l~~~G~---~v~~~~~~   40 (255)
T PRK06463          5 FKGKVALITGGTRGIGRAIAEAFLREGA---KVAVLYNS   40 (255)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCC
Confidence            5689999999999999999999999987   67776664

>PRK07109 short chain dehydrogenase; Provisional

Probab=97.46  E-value=0.00026  Score=57.02  Aligned_cols=38  Identities=21%  Similarity=0.329  Sum_probs=34.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++|+||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus         6 l~~k~vlITGas~gIG~~la~~la~~G~---~Vvl~~R~~~   43 (334)
T PRK07109          6 IGRQVVVITGASAGVGRATARAFARRGA---KVVLLARGEE   43 (334)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            5678999999999999999999999987   7999999743

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=97.46  E-value=0.00033  Score=57.48  Aligned_cols=34  Identities=35%  Similarity=0.683  Sum_probs=29.8

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      |+++||||.||||+++++.+++..++ .+|+.++.
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d-~~v~~~Dk   34 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPD-DHVVNLDK   34 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCC-ceEEEEec
Confidence            57999999999999999999999886 45777776

>PRK12743 oxidoreductase; Provisional

Probab=97.45  E-value=0.00044  Score=52.65  Aligned_cols=34  Identities=18%  Similarity=0.031  Sum_probs=29.9

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +++++||||+|.||.+++++|++.|.   +|+++.|.
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~---~V~~~~~~   35 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGF---DIGITWHS   35 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCC
Confidence            57899999999999999999999987   67777654

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=97.45  E-value=0.00014  Score=54.88  Aligned_cols=33  Identities=39%  Similarity=0.491  Sum_probs=30.0

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        68 VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+|+||||.+|+++++.|++.+.   +|.+++|+.+
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~---~V~~l~R~~~   33 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF---SVRALVRDPS   33 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG---CEEEEESSSH
T ss_pred             CEEECCccHHHHHHHHHHHhCCC---CcEEEEeccc
Confidence            79999999999999999999765   7999999873

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.45  E-value=0.00038  Score=48.47  Aligned_cols=41  Identities=27%  Similarity=0.566  Sum_probs=32.6

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC-CCccHH
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK-KGKAVQ  108 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~-~~~~~~  108 (121)
                      +|.|.||||++|+.+++.|.++ |.+..+.++.|+. .+....
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~h-p~~e~~~~~~~~~~~g~~~~   42 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEH-PDFELVALVSSSRSAGKPLS   42 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-STEEEEEEEESTTTTTSBHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcC-CCccEEEeeeeccccCCeee
Confidence            6899999999999999999995 7776777777776 444433

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK06483 dihydromonapterin reductase; Provisional

Probab=97.44  E-value=0.00029  Score=52.84  Aligned_cols=36  Identities=22%  Similarity=0.251  Sum_probs=32.3

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +|+++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~~   37 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQ---PVIVSYRTHY   37 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCC---eEEEEeCCch
Confidence            57899999999999999999999987   7888998753

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.44  E-value=0.00029  Score=52.68  Aligned_cols=38  Identities=21%  Similarity=0.392  Sum_probs=33.6

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|+||.++++.|++.|.   +|+++.|+..
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~---~vi~~~r~~~   40 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGA---KLALIDLNQE   40 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            5688999999999999999999999886   7888888753

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=97.44  E-value=0.00025  Score=54.18  Aligned_cols=37  Identities=19%  Similarity=0.310  Sum_probs=32.1

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+++|+++||||++.||.+++++|++.|.   +|++..|.
T Consensus         5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~---~v~~~~~~   41 (260)
T PRK08416          5 EMKGKTLVISGGTRGIGKAIVYEFAQSGV---NIAFTYNS   41 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCC
Confidence            46789999999999999999999999987   57776653

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=97.43  E-value=0.00027  Score=53.04  Aligned_cols=35  Identities=20%  Similarity=0.304  Sum_probs=29.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|++..+
T Consensus         1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~---~vv~~~~   35 (246)
T PRK12938          1 MSQRIAYVTGGMGGIGTSICQRLHKDGF---KVVAGCG   35 (246)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCC---EEEEEcC
Confidence            3578999999999999999999999987   5666443

>PRK05872 short chain dehydrogenase; Provisional

Probab=97.43  E-value=0.0003  Score=55.28  Aligned_cols=38  Identities=21%  Similarity=0.204  Sum_probs=34.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus         7 l~gk~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~~   44 (296)
T PRK05872          7 LAGKVVVVTGAARGIGAELARRLHARGA---KLALVDLEEA   44 (296)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            5789999999999999999999999987   7999998643

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.42  E-value=0.00026  Score=54.08  Aligned_cols=36  Identities=17%  Similarity=0.108  Sum_probs=32.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +++|+++||||+|.||.+++++|++.|.   +|+++.|.
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~---~vv~~~~~   41 (251)
T PRK12481          6 LNGKVAIITGCNTGLGQGMAIGLAKAGA---DIVGVGVA   41 (251)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEecCc
Confidence            5689999999999999999999999987   68877775

>PRK07677 short chain dehydrogenase; Provisional

Probab=97.40  E-value=0.00031  Score=53.25  Aligned_cols=36  Identities=25%  Similarity=0.454  Sum_probs=32.4

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +|+++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~---~Vi~~~r~~~   36 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGA---NVVITGRTKE   36 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            57899999999999999999999987   7999998753

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.39  E-value=0.00027  Score=53.68  Aligned_cols=36  Identities=17%  Similarity=0.228  Sum_probs=31.8

Q ss_pred             hcCCeEEEEcCCC--hHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTG--FMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatG--fIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +++++++||||+|  .||.+++++|++.|.   +|+++.|+
T Consensus         3 l~~k~vlItGas~~~giG~~la~~l~~~G~---~vi~~~r~   40 (256)
T PRK12748          3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI---DIFFTYWS   40 (256)
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC---cEEEEcCC
Confidence            4678999999996  599999999999987   68888886

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=97.39  E-value=0.00045  Score=47.94  Aligned_cols=37  Identities=30%  Similarity=0.403  Sum_probs=31.0

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++++||||+|++|.+++++|++.+..  .|+++.|+...
T Consensus         1 ~~~li~Ga~~~iG~~~~~~l~~~g~~--~v~~~~r~~~~   37 (180)
T smart00822        1 GTYLITGGLGGLGLELARWLAERGAR--HLVLLSRSGPD   37 (180)
T ss_pred             CEEEEEcCCChHHHHHHHHHHHhhCC--eEEEEeCCCCC
Confidence            47899999999999999999998753  68888886543

It uses NADPH to reduce the keto group to a hydroxy group.

>PLN02780 ketoreductase/ oxidoreductase

Probab=97.38  E-value=0.0003  Score=56.45  Aligned_cols=38  Identities=26%  Similarity=0.227  Sum_probs=33.7

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .|+.++||||+|.||.+++++|++.|.   +|+++.|+...
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~---~Vil~~R~~~~   89 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGL---NLVLVARNPDK   89 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCC---CEEEEECCHHH
Confidence            378999999999999999999999987   69999997543

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=97.38  E-value=0.0003  Score=59.12  Aligned_cols=37  Identities=24%  Similarity=0.432  Sum_probs=33.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus       176 l~gK~VLITGASgGIG~aLA~~La~~G~---~Vi~l~r~~  212 (406)
T PRK07424        176 LKGKTVAVTGASGTLGQALLKELHQQGA---KVVALTSNS  212 (406)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            4689999999999999999999999987   788888864

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.37  E-value=0.00033  Score=56.05  Aligned_cols=40  Identities=20%  Similarity=0.326  Sum_probs=35.9

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ...+++++||||++=||.+++++|+++|+   .|+++.|+.++
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~---~liLvaR~~~k   42 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGY---NLILVARREDK   42 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCcHHH
Confidence            35678999999999999999999999998   79999998654

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=97.37  E-value=0.00034  Score=52.08  Aligned_cols=32  Identities=22%  Similarity=0.305  Sum_probs=29.2

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      |+++||||+|+||.+++++|++.|+   +|+++.|
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~---~v~~~~r   32 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGY---RVAANCG   32 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC---EEEEEeC
Confidence            5799999999999999999999987   6888887

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.37  E-value=0.00061  Score=53.89  Aligned_cols=37  Identities=16%  Similarity=0.073  Sum_probs=32.8

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+++++++||||+|+||.+++++|++.|.   +|++..|.
T Consensus         9 ~l~~k~~lVTGas~gIG~~ia~~L~~~Ga---~Vv~~~~~   45 (306)
T PRK07792          9 DLSGKVAVVTGAAAGLGRAEALGLARLGA---TVVVNDVA   45 (306)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEecCC
Confidence            46889999999999999999999999987   67777774

>PRK07831 short chain dehydrogenase; Provisional

Probab=97.36  E-value=0.00052  Score=52.30  Aligned_cols=40  Identities=15%  Similarity=0.241  Sum_probs=33.8

Q ss_pred             hhhcCCeEEEEcCCCh-HHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          61 EFFRDASVFVTGGTGF-MGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        61 ~~~~~~~VlVTGatGf-IGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ..+++++++||||+|+ ||..++++|++.|.   +|++..|+..
T Consensus        13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~---~V~~~~~~~~   53 (262)
T PRK07831         13 GLLAGKVVLVTAAAGTGIGSATARRALEEGA---RVVISDIHER   53 (262)
T ss_pred             cccCCCEEEEECCCcccHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence            3557899999999985 99999999999987   6888888643

>PRK06125 short chain dehydrogenase; Provisional

Probab=97.35  E-value=0.00047  Score=52.45  Aligned_cols=38  Identities=21%  Similarity=0.294  Sum_probs=34.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus         5 ~~~k~vlItG~~~giG~~ia~~l~~~G~---~V~~~~r~~~   42 (259)
T PRK06125          5 LAGKRVLITGASKGIGAAAAEAFAAEGC---HLHLVARDAD   42 (259)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence            4689999999999999999999999877   7999999753

>PRK06953 short chain dehydrogenase; Provisional

Probab=97.35  E-value=0.00035  Score=52.09  Aligned_cols=35  Identities=14%  Similarity=0.188  Sum_probs=31.0

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++++||||+|+||++++++|++.|.   +|+++.|+..
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~---~v~~~~r~~~   36 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGW---RVIATARDAA   36 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCC---EEEEEECCHH
Confidence            5799999999999999999999886   7888888743

>PRK05865 hypothetical protein; Provisional

Probab=97.35  E-value=0.00029  Score=64.16  Aligned_cols=34  Identities=26%  Similarity=0.438  Sum_probs=30.8

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+|+||||+||||++++++|++.|+   +|++++|+.
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~---~Vv~l~R~~   34 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGH---EVVGIARHR   34 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC---EEEEEECCc
Confidence            5799999999999999999999987   799999863

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=97.33  E-value=0.00042  Score=51.67  Aligned_cols=34  Identities=18%  Similarity=0.155  Sum_probs=31.0

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~---~vi~~~r~~   36 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGY---RVIATYFSG   36 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC---EEEEEeCCc
Confidence            5899999999999999999999886   799999874

>PRK06139 short chain dehydrogenase; Provisional

Probab=97.33  E-value=0.00043  Score=55.97  Aligned_cols=38  Identities=24%  Similarity=0.362  Sum_probs=34.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus         5 l~~k~vlITGAs~GIG~aia~~la~~G~---~Vvl~~R~~~   42 (330)
T PRK06139          5 LHGAVVVITGASSGIGQATAEAFARRGA---RLVLAARDEE   42 (330)
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            4679999999999999999999999987   7889999753

>PRK06123 short chain dehydrogenase; Provisional

Probab=97.32  E-value=0.00046  Score=51.78  Aligned_cols=33  Identities=12%  Similarity=0.002  Sum_probs=27.9

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      +++++||||+|+||++++++|++.|.   .|++..|
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~---~vv~~~~   34 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGY---AVCLNYL   34 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC---eEEEecC
Confidence            57899999999999999999999986   4555543

>TIGR02415 23BDH acetoin reductases

Probab=97.32  E-value=0.00056  Score=51.50  Aligned_cols=34  Identities=24%  Similarity=0.237  Sum_probs=30.5

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~---~v~~~~r~~   34 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGF---AVAVADLNE   34 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5799999999999999999999986   788888864

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK07832 short chain dehydrogenase; Provisional

Probab=97.30  E-value=0.00053  Score=52.74  Aligned_cols=34  Identities=24%  Similarity=0.339  Sum_probs=30.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++++||||+|.||.+++++|++.|.   +|+++.|+.
T Consensus         1 k~vlItGas~giG~~la~~la~~G~---~vv~~~r~~   34 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGA---ELFLTDRDA   34 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5799999999999999999999886   688888864

>PRK07201 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.00049  Score=59.18  Aligned_cols=38  Identities=21%  Similarity=0.358  Sum_probs=34.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus       369 ~~~k~vlItGas~giG~~la~~l~~~G~---~V~~~~r~~~  406 (657)
T PRK07201        369 LVGKVVLITGASSGIGRATAIKVAEAGA---TVFLVARNGE  406 (657)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            5678999999999999999999999987   7999999753

>PRK09620 hypothetical protein; Provisional

Probab=97.26  E-value=0.00056  Score=53.31  Aligned_cols=35  Identities=29%  Similarity=0.575  Sum_probs=30.1

Q ss_pred             hcCCeEEEEcCC----------------ChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          63 FRDASVFVTGGT----------------GFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        63 ~~~~~VlVTGat----------------GfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      +.|++|+||+|.                ||+|++++++|++.|+   +|+++.+
T Consensus         1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga---~V~li~g   51 (229)
T PRK09620          1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGA---HVIYLHG   51 (229)
T ss_pred             CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCC---eEEEEeC
Confidence            478999999886                9999999999999998   5776664

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=97.25  E-value=0.00066  Score=51.76  Aligned_cols=35  Identities=20%  Similarity=0.276  Sum_probs=31.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+++||||+|.||..++++|++.|.   +|+++.|+..
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~---~V~~~~r~~~   35 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGA---RVVISSRNEE   35 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence            5799999999999999999999987   7899998753

>PRK07069 short chain dehydrogenase; Validated

Probab=97.24  E-value=0.00094  Score=50.07  Aligned_cols=32  Identities=19%  Similarity=0.436  Sum_probs=29.4

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +++||||+|+||.++++.|++.|.   +|+++.|+
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~---~v~~~~r~   32 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGA---KVFLTDIN   32 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCC---EEEEEeCC
Confidence            389999999999999999999987   79999987

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=97.24  E-value=0.0005  Score=59.98  Aligned_cols=28  Identities=18%  Similarity=0.252  Sum_probs=24.9

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPH   91 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~   91 (121)
                      ..|+|+||||+||||++++++|...+.+
T Consensus       379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~  406 (668)
T PLN02260        379 PSLKFLIYGRTGWIGGLLGKLCEKQGIA  406 (668)
T ss_pred             CCceEEEECCCchHHHHHHHHHHhCCCe
Confidence            4578999999999999999999988763

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=97.22  E-value=0.00062  Score=50.82  Aligned_cols=33  Identities=21%  Similarity=0.176  Sum_probs=27.8

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEE-ecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLL-VRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l-~R~  101 (121)
                      ++++||||+|+||.+++++|++.|+   +|+++ .|+
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~---~v~~~~~~~   35 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGY---TVAVNYQQN   35 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCC
Confidence            5799999999999999999999987   56654 454

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=97.22  E-value=0.00066  Score=51.70  Aligned_cols=36  Identities=19%  Similarity=0.041  Sum_probs=31.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +++++++||||+|.||.+++++|++.|.   +|+++.|.
T Consensus         8 l~~k~~lItG~~~gIG~a~a~~l~~~G~---~vv~~~~~   43 (253)
T PRK08993          8 LEGKVAVVTGCDTGLGQGMALGLAEAGC---DIVGINIV   43 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEecCc
Confidence            6789999999999999999999999987   67777664

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=97.20  E-value=0.00083  Score=50.20  Aligned_cols=35  Identities=29%  Similarity=0.566  Sum_probs=28.5

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      |+|+||||+|+||++++++|++.++.+ .|....|+
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~-~v~~~~~~   35 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDA-TVHATYRH   35 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCC-EEEEEccC
Confidence            589999999999999999999986542 46655664

>KOG1430|consensus

Probab=97.19  E-value=0.00064  Score=56.63  Aligned_cols=39  Identities=36%  Similarity=0.562  Sum_probs=33.0

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +..+++||||+||+|.|++.+|++.+. ..+|++++..+.
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~-~~~irv~D~~~~   41 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENEL-KLEIRVVDKTPT   41 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhccc-ccEEEEeccCcc
Confidence            456899999999999999999999974 248888888654

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=97.19  E-value=0.0011  Score=49.72  Aligned_cols=33  Identities=12%  Similarity=0.017  Sum_probs=28.0

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      .++|+||||+|+||+.++++|++.+.   +|++..+
T Consensus         2 ~k~ilItGas~giG~~la~~l~~~g~---~v~~~~~   34 (248)
T PRK06947          2 RKVVLITGASRGIGRATAVLAAARGW---SVGINYA   34 (248)
T ss_pred             CcEEEEeCCCCcHHHHHHHHHHHCCC---EEEEEeC
Confidence            36899999999999999999999987   5665543

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=97.17  E-value=0.00061  Score=50.49  Aligned_cols=32  Identities=22%  Similarity=0.362  Sum_probs=28.9

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        68 VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++|||++|+||++++++|++.|+   +|+++.|+.
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~---~v~~~~r~~   32 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGA---KVIITYRSS   32 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            58999999999999999999987   789998864

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK05884 short chain dehydrogenase; Provisional

Probab=97.15  E-value=0.00082  Score=50.69  Aligned_cols=34  Identities=24%  Similarity=0.352  Sum_probs=30.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+++||||+|.||++++++|++.+.   +|+++.|+.
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~---~v~~~~r~~   34 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGH---KVTLVGARR   34 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            4699999999999999999999887   788888864

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=97.13  E-value=0.00075  Score=59.65  Aligned_cols=38  Identities=26%  Similarity=0.357  Sum_probs=34.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +.+|+++||||+|+||++++++|++.|.   +|+++.|+..
T Consensus       412 l~gkvvLVTGasggIG~aiA~~La~~Ga---~Vvi~~r~~~  449 (676)
T TIGR02632       412 LARRVAFVTGGAGGIGRETARRLAAEGA---HVVLADLNLE  449 (676)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHhCCC---EEEEEeCCHH
Confidence            5689999999999999999999999987   7999998753

>PRK06720 hypothetical protein; Provisional

Probab=97.09  E-value=0.0012  Score=48.83  Aligned_cols=39  Identities=15%  Similarity=0.091  Sum_probs=34.3

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .++++.++||||+|.||..++++|++.|.   +|++..|+..
T Consensus        13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~---~V~l~~r~~~   51 (169)
T PRK06720         13 KLAGKVAIVTGGGIGIGRNTALLLAKQGA---KVIVTDIDQE   51 (169)
T ss_pred             ccCCCEEEEecCCChHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            36889999999999999999999999886   7888888643

>PRK05855 short chain dehydrogenase; Validated

Probab=97.09  E-value=0.00096  Score=55.69  Aligned_cols=39  Identities=18%  Similarity=0.097  Sum_probs=34.3

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+++++++||||+|+||++++++|++.|.   +|+++.|+..
T Consensus       312 ~~~~~~~lv~G~s~giG~~~a~~l~~~G~---~v~~~~r~~~  350 (582)
T PRK05855        312 PFSGKLVVVTGAGSGIGRETALAFAREGA---EVVASDIDEA  350 (582)
T ss_pred             cCCCCEEEEECCcCHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            35678999999999999999999999987   6999999753

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=97.09  E-value=0.0014  Score=50.24  Aligned_cols=33  Identities=18%  Similarity=0.186  Sum_probs=29.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ++++||||+|+||.+++++|++.|.   +|+++.|.
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~---~V~~~~~~   34 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGY---RVVLHYHR   34 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCC---eEEEEcCC
Confidence            5799999999999999999999987   68877664

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK08303 short chain dehydrogenase; Provisional

Probab=97.07  E-value=0.0011  Score=52.88  Aligned_cols=37  Identities=24%  Similarity=0.284  Sum_probs=33.6

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||++-||.+++++|++.|.   +|++..|+.
T Consensus         6 l~~k~~lITGgs~GIG~aia~~la~~G~---~Vv~~~r~~   42 (305)
T PRK08303          6 LRGKVALVAGATRGAGRGIAVELGAAGA---TVYVTGRST   42 (305)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeccc
Confidence            5789999999999999999999999987   788889874

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=97.06  E-value=0.0013  Score=46.47  Aligned_cols=34  Identities=26%  Similarity=0.428  Sum_probs=30.6

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      |+++||||+|=||..++++|++.+.  .+|+++.|+
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~--~~v~~~~r~   34 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGA--RVVILTSRS   34 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTT--EEEEEEESS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCc--eEEEEeeec
Confidence            5899999999999999999999955  378999998

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK07791 short chain dehydrogenase; Provisional

Probab=97.05  E-value=0.0011  Score=51.79  Aligned_cols=38  Identities=16%  Similarity=0.131  Sum_probs=32.9

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++++++||||++.||.+++++|++.|.   +|+++.|+.
T Consensus         3 ~l~~k~~lITGas~GIG~aia~~la~~G~---~vii~~~~~   40 (286)
T PRK07791          3 LLDGRVVIVTGAGGGIGRAHALAFAAEGA---RVVVNDIGV   40 (286)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEeeCCc
Confidence            35789999999999999999999999987   677777653

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=97.04  E-value=0.0014  Score=52.10  Aligned_cols=37  Identities=19%  Similarity=0.234  Sum_probs=32.6

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhC-CCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAI-PHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~-~~~~~V~~l~R~~~  103 (121)
                      .+++++||||++.||.+++++|++.| .   +|++..|+..
T Consensus         2 ~~k~vlITGas~GIG~aia~~L~~~G~~---~V~l~~r~~~   39 (314)
T TIGR01289         2 QKPTVIITGASSGLGLYAAKALAATGEW---HVIMACRDFL   39 (314)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCC---EEEEEeCCHH
Confidence            46899999999999999999999998 5   7888888643

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=97.01  E-value=0.0016  Score=48.66  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=28.0

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        68 VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+||||+|+||.+++++|++.|.   +|+++.|..
T Consensus         1 vlItGas~giG~~~a~~l~~~G~---~v~~~~~~~   32 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGF---EICVHYHSG   32 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCC
Confidence            58999999999999999999987   688887753

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK08324 short chain dehydrogenase; Validated

Probab=97.00  E-value=0.0012  Score=58.16  Aligned_cols=38  Identities=21%  Similarity=0.260  Sum_probs=34.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +.+++++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus       420 l~gk~vLVTGasggIG~~la~~L~~~Ga---~Vvl~~r~~~  457 (681)
T PRK08324        420 LAGKVALVTGAAGGIGKATAKRLAAEGA---CVVLADLDEE  457 (681)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcC---EEEEEeCCHH
Confidence            5689999999999999999999999987   7999999753

>PRK08309 short chain dehydrogenase; Provisional

Probab=97.00  E-value=0.0012  Score=49.31  Aligned_cols=33  Identities=24%  Similarity=0.384  Sum_probs=28.8

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+++|||||||+|. +++.|++.|+   +|++..|++
T Consensus         1 m~vlVtGGtG~gg~-la~~L~~~G~---~V~v~~R~~   33 (177)
T PRK08309          1 MHALVIGGTGMLKR-VSLWLCEKGF---HVSVIARRE   33 (177)
T ss_pred             CEEEEECcCHHHHH-HHHHHHHCcC---EEEEEECCH
Confidence            57999999999886 9999999987   788888864

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.94  E-value=0.002  Score=53.46  Aligned_cols=39  Identities=26%  Similarity=0.298  Sum_probs=33.8

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ..+++++++||||+|.||..++++|++.+.   +|+++.|..
T Consensus       206 ~~~~g~~vlItGasggIG~~la~~l~~~Ga---~vi~~~~~~  244 (450)
T PRK08261        206 RPLAGKVALVTGAARGIGAAIAEVLARDGA---HVVCLDVPA  244 (450)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            345789999999999999999999999987   688888853

>PRK07578 short chain dehydrogenase; Provisional

Probab=96.92  E-value=0.0017  Score=47.56  Aligned_cols=33  Identities=21%  Similarity=0.433  Sum_probs=29.2

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+++||||+|.||.+++++|++. .   +|+++.|+.
T Consensus         1 ~~vlItGas~giG~~la~~l~~~-~---~vi~~~r~~   33 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR-H---EVITAGRSS   33 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc-C---cEEEEecCC
Confidence            47999999999999999999987 4   788888864

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=96.92  E-value=0.0033  Score=48.29  Aligned_cols=37  Identities=16%  Similarity=0.135  Sum_probs=31.1

Q ss_pred             hcCCeEEEEcCC--ChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGT--GFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGat--GfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+  +-||.+++++|++.|.   +|++..|+.
T Consensus         4 l~~k~~lItGas~~~GIG~aia~~la~~G~---~v~~~~~~~   42 (258)
T PRK07370          4 LTGKKALVTGIANNRSIAWGIAQQLHAAGA---ELGITYLPD   42 (258)
T ss_pred             cCCcEEEEeCCCCCCchHHHHHHHHHHCCC---EEEEEecCc
Confidence            468999999986  6899999999999987   677766653

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.89  E-value=0.0032  Score=48.43  Aligned_cols=37  Identities=11%  Similarity=0.051  Sum_probs=32.1

Q ss_pred             hcCCeEEEEcCC--ChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGT--GFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGat--GfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+  +-||.+++++|++.|.   +|++..|..
T Consensus         5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~---~v~~~~r~~   43 (257)
T PRK08594          5 LEGKTYVVMGVANKRSIAWGIARSLHNAGA---KLVFTYAGE   43 (257)
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCC---EEEEecCcc
Confidence            468999999997  7999999999999987   688887753

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.88  E-value=0.0017  Score=49.63  Aligned_cols=37  Identities=5%  Similarity=0.002  Sum_probs=32.9

Q ss_pred             hhcCCeEEEEcCC--ChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          62 FFRDASVFVTGGT--GFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        62 ~~~~~~VlVTGat--GfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+++|+++||||+  +-||..++++|++.|.   +|++..|+
T Consensus         4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~---~Vi~~~r~   42 (252)
T PRK06079          4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGA---TVIYTYQN   42 (252)
T ss_pred             ccCCCEEEEeCCCCCCchHHHHHHHHHHCCC---EEEEecCc
Confidence            4678999999999  7899999999999987   68888886

>PRK08862 short chain dehydrogenase; Provisional

Probab=96.87  E-value=0.0028  Score=48.25  Aligned_cols=38  Identities=11%  Similarity=0.259  Sum_probs=34.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||++-||..++++|++.|.   +|++..|+..
T Consensus         3 ~~~k~~lVtGas~GIG~aia~~la~~G~---~V~~~~r~~~   40 (227)
T PRK08862          3 IKSSIILITSAGSVLGRTISCHFARLGA---TLILCDQDQS   40 (227)
T ss_pred             CCCeEEEEECCccHHHHHHHHHHHHCCC---EEEEEcCCHH
Confidence            4689999999999999999999999987   6888888754

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.86  E-value=0.0033  Score=48.24  Aligned_cols=37  Identities=5%  Similarity=-0.113  Sum_probs=32.4

Q ss_pred             hcCCeEEEEcCC--ChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGT--GFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGat--GfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+  +-||.+++++|++.|.   +|++..|+.
T Consensus         8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~---~v~l~~r~~   46 (258)
T PRK07533          8 LAGKRGLVVGIANEQSIAWGCARAFRALGA---ELAVTYLND   46 (258)
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCC---EEEEEeCCh
Confidence            578999999998  4899999999999987   688888864

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.85  E-value=0.0021  Score=49.04  Aligned_cols=35  Identities=20%  Similarity=0.308  Sum_probs=29.8

Q ss_pred             hcCCeEEEEcCCC--hHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          63 FRDASVFVTGGTG--FMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        63 ~~~~~VlVTGatG--fIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      +++++++||||+|  .||.+++++|++.|.   +|++..|
T Consensus         4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~---~vi~~~~   40 (256)
T PRK12859          4 LKNKVAVVTGVSRLDGIGAAICKELAEAGA---DIFFTYW   40 (256)
T ss_pred             cCCcEEEEECCCCCCChHHHHHHHHHHCCC---eEEEEec
Confidence            5789999999995  799999999999987   5766643

>PRK07041 short chain dehydrogenase; Provisional

Probab=96.78  E-value=0.0018  Score=48.16  Aligned_cols=31  Identities=19%  Similarity=0.343  Sum_probs=28.2

Q ss_pred             EEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          69 FVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        69 lVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +||||+|+||.+++++|++.+.   +|+++.|+.
T Consensus         1 lItGas~~iG~~~a~~l~~~G~---~v~~~~r~~   31 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGA---RVTIASRSR   31 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5899999999999999999987   799999974

>PRK06484 short chain dehydrogenase; Validated

Probab=96.78  E-value=0.0026  Score=53.36  Aligned_cols=38  Identities=18%  Similarity=0.273  Sum_probs=34.2

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ...+++++||||+|.||.+++++|++.|.   +|+++.|+.
T Consensus       266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~---~V~~~~r~~  303 (520)
T PRK06484        266 AESPRVVAITGGARGIGRAVADRFAAAGD---RLLIIDRDA  303 (520)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            45789999999999999999999999987   799999864

>PRK06484 short chain dehydrogenase; Validated

Probab=96.77  E-value=0.0031  Score=52.91  Aligned_cols=38  Identities=24%  Similarity=0.349  Sum_probs=33.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .++++++||||++.||.+++++|++.|.   +|+++.|+..
T Consensus         3 ~~~k~~lITGas~gIG~aia~~l~~~G~---~V~~~~r~~~   40 (520)
T PRK06484          3 AQSRVVLVTGAAGGIGRAACQRFARAGD---QVVVADRNVE   40 (520)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            4689999999999999999999999987   7888888644

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=96.74  E-value=0.0047  Score=49.10  Aligned_cols=40  Identities=18%  Similarity=0.277  Sum_probs=35.2

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ..++|.++||||++-||.++++.|++.|.   +|++..|..++
T Consensus         3 ~~~~kv~lITGASSGiG~A~A~~l~~~G~---~vvl~aRR~dr   42 (246)
T COG4221           3 TLKGKVALITGASSGIGEATARALAEAGA---KVVLAARREER   42 (246)
T ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHCCC---eEEEEeccHHH
Confidence            34678999999999999999999999998   79999997543

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=96.72  E-value=0.0063  Score=44.88  Aligned_cols=45  Identities=22%  Similarity=0.360  Sum_probs=34.5

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC-CCCccHHHHHHH
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP-KKGKAVQERLEA  113 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~-~~~~~~~~r~~e  113 (121)
                      +++||||+|-||..+++.|+..+.  .+|+++.|+ .......+.+.+
T Consensus         2 tylitGG~gglg~~la~~La~~~~--~~~il~~r~~~~~~~~~~~i~~   47 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGA--RRLILLGRSGAPSAEAEAAIRE   47 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGGGSTTHHHHHHH
T ss_pred             EEEEECCccHHHHHHHHHHHHcCC--CEEEEeccCCCccHHHHHHHHH
Confidence            689999999999999999999975  489999998 333333434443

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>KOG1205|consensus

Probab=96.71  E-value=0.0039  Score=50.36  Aligned_cols=42  Identities=21%  Similarity=0.322  Sum_probs=35.6

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.+.||.|+||||+.=||.+++.++++.|.   +++.++|....
T Consensus         7 ~e~~~~kvVvITGASsGIG~~lA~~la~~G~---~l~lvar~~rr   48 (282)
T KOG1205|consen    7 MERLAGKVVLITGASSGIGEALAYELAKRGA---KLVLVARRARR   48 (282)
T ss_pred             HHHhCCCEEEEeCCCcHHHHHHHHHHHhCCC---ceEEeehhhhh
Confidence            4568899999999999999999999999987   57777776443

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.71  E-value=0.0035  Score=48.76  Aligned_cols=37  Identities=5%  Similarity=0.051  Sum_probs=32.4

Q ss_pred             hcCCeEEEEcCCC--hHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTG--FMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatG--fIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|.++||||++  -||..++++|++.|.   +|++..|+.
T Consensus         5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga---~V~~~~r~~   43 (271)
T PRK06505          5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGA---ELAFTYQGE   43 (271)
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHhCCC---EEEEecCch
Confidence            5789999999996  899999999999987   688877753

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.68  E-value=0.0041  Score=46.25  Aligned_cols=37  Identities=27%  Similarity=0.354  Sum_probs=32.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++|+||+|.+|..+++.|++.+.   +|+++.|+.
T Consensus        26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~---~V~l~~R~~   62 (194)
T cd01078          26 LKGKTAVVLGGTGPVGQRAAVLLAREGA---RVVLVGRDL   62 (194)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            4678999999999999999999999875   789889874

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.64  E-value=0.0038  Score=48.07  Aligned_cols=37  Identities=8%  Similarity=0.087  Sum_probs=31.3

Q ss_pred             hhcCCeEEEEcC--CChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          62 FFRDASVFVTGG--TGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        62 ~~~~~~VlVTGa--tGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ++++++++||||  ++-||.+++++|++.|.   +|++..|.
T Consensus         3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~---~v~~~~~~   41 (261)
T PRK08690          3 FLQGKKILITGMISERSIAYGIAKACREQGA---ELAFTYVV   41 (261)
T ss_pred             ccCCcEEEEECCCCCCcHHHHHHHHHHHCCC---EEEEEcCc
Confidence            367899999997  66899999999999987   67776664

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.64  E-value=0.0052  Score=47.15  Aligned_cols=37  Identities=11%  Similarity=0.046  Sum_probs=32.7

Q ss_pred             hcCCeEEEEcC--CChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGG--TGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGa--tGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||  ++-||.+++++|++.|.   +|++..|+.
T Consensus         5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~---~v~l~~r~~   43 (256)
T PRK07889          5 LEGKRILVTGVITDSSIAFHVARVAQEQGA---EVVLTGFGR   43 (256)
T ss_pred             ccCCEEEEeCCCCcchHHHHHHHHHHHCCC---EEEEecCcc
Confidence            57899999999  78999999999999987   788888764

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.58  E-value=0.005  Score=50.13  Aligned_cols=38  Identities=24%  Similarity=0.325  Sum_probs=31.3

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+|.||||++|.++++.|.++++...++..+.|..
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~   38 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASAR   38 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccc
Confidence            36899999999999999999999765445778887753

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=96.58  E-value=0.0044  Score=50.10  Aligned_cols=47  Identities=15%  Similarity=0.206  Sum_probs=34.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHHHHhh
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFE  116 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~e~~~  116 (121)
                      |+|+|||++|.+|++|++++. .+.   .|+++.|..-.......+.++++
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~-~~~---~v~a~~~~~~Ditd~~~v~~~i~   47 (281)
T COG1091           1 MKILITGANGQLGTELRRALP-GEF---EVIATDRAELDITDPDAVLEVIR   47 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC-CCc---eEEeccCccccccChHHHHHHHH
Confidence            459999999999999999988 333   79999887644443444555544

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.56  E-value=0.0048  Score=47.98  Aligned_cols=38  Identities=5%  Similarity=-0.038  Sum_probs=32.6

Q ss_pred             hhhcCCeEEEEcCC--ChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          61 EFFRDASVFVTGGT--GFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        61 ~~~~~~~VlVTGat--GfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ..+++|+++||||+  +=||.+++++|++.|.   +|++..|+
T Consensus         6 ~~~~~k~~lItGas~~~GIG~aia~~la~~G~---~V~l~~r~   45 (272)
T PRK08159          6 GLMAGKRGLILGVANNRSIAWGIAKACRAAGA---ELAFTYQG   45 (272)
T ss_pred             ccccCCEEEEECCCCCCcHHHHHHHHHHHCCC---EEEEEcCc
Confidence            45678999999997  7899999999999987   68777775

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.55  E-value=0.0058  Score=47.43  Aligned_cols=36  Identities=11%  Similarity=0.159  Sum_probs=31.6

Q ss_pred             hcCCeEEEEcCCC--hHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTG--FMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatG--fIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +++|+++||||++  -||..+++.|++.|.   +|++..|+
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~---~vil~~r~   41 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGA---ELAFTYQN   41 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCC---EEEEEecc
Confidence            6789999999985  899999999999987   67777776

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.54  E-value=0.005  Score=47.37  Aligned_cols=37  Identities=5%  Similarity=0.130  Sum_probs=31.7

Q ss_pred             hhcCCeEEEEcCCC--hHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          62 FFRDASVFVTGGTG--FMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        62 ~~~~~~VlVTGatG--fIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+++|+++||||++  =||.+++++|++.|.   +|++..|+
T Consensus         5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~---~v~~~~r~   43 (260)
T PRK06603          5 LLQGKKGLITGIANNMSISWAIAQLAKKHGA---ELWFTYQS   43 (260)
T ss_pred             ccCCcEEEEECCCCCcchHHHHHHHHHHcCC---EEEEEeCc
Confidence            45789999999996  699999999999987   67777775

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=96.51  E-value=0.0061  Score=46.42  Aligned_cols=34  Identities=21%  Similarity=0.338  Sum_probs=29.2

Q ss_pred             eEEEEcCCChHHHHHHHHHHH----hCCCccEEEEEecCCC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLR----AIPHLKHIYLLVRPKK  103 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~----~~~~~~~V~~l~R~~~  103 (121)
                      .++||||+|.||.+++++|++    .+.   +|+++.|+..
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~---~V~~~~r~~~   39 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGS---VLVLSARNDE   39 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCc---EEEEEEcCHH
Confidence            589999999999999999997    455   7888999754

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>PRK06940 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.0078  Score=46.74  Aligned_cols=34  Identities=21%  Similarity=0.277  Sum_probs=28.4

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +|+++|||| |.||.+++++|. .|.   +|+++.|+..
T Consensus         2 ~k~~lItGa-~gIG~~la~~l~-~G~---~Vv~~~r~~~   35 (275)
T PRK06940          2 KEVVVVIGA-GGIGQAIARRVG-AGK---KVLLADYNEE   35 (275)
T ss_pred             CCEEEEECC-ChHHHHHHHHHh-CCC---EEEEEeCCHH
Confidence            578999998 689999999996 665   7999999743

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.40  E-value=0.0075  Score=47.12  Aligned_cols=37  Identities=3%  Similarity=0.013  Sum_probs=32.2

Q ss_pred             hcCCeEEEEcCC--ChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGT--GFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGat--GfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+  +-||..++++|++.|.   +|++..|+.
T Consensus         3 l~~k~~lItGas~~~GIG~aiA~~la~~G~---~Vil~~r~~   41 (274)
T PRK08415          3 MKGKKGLIVGVANNKSIAYGIAKACFEQGA---ELAFTYLNE   41 (274)
T ss_pred             cCCcEEEEECCCCCCCHHHHHHHHHHHCCC---EEEEEecCH
Confidence            468999999997  6899999999999987   688888863

>PRK05599 hypothetical protein; Provisional

Probab=96.35  E-value=0.0089  Score=45.52  Aligned_cols=34  Identities=21%  Similarity=0.273  Sum_probs=29.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+++||||++-||..++++|++ +.   +|++..|+..
T Consensus         1 ~~vlItGas~GIG~aia~~l~~-g~---~Vil~~r~~~   34 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLCH-GE---DVVLAARRPE   34 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHhC-CC---EEEEEeCCHH
Confidence            5799999999999999999984 65   7888898754

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=96.34  E-value=0.0087  Score=44.99  Aligned_cols=38  Identities=18%  Similarity=0.334  Sum_probs=32.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +.+++++||||++-||..+++.|++.|.   +|++..|...
T Consensus         3 ~~~~~ilITGas~GiG~aia~~l~~~G~---~v~~~~~~~~   40 (251)
T COG1028           3 LSGKVALVTGASSGIGRAIARALAREGA---RVVVAARRSE   40 (251)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---eEEEEcCCCc
Confidence            4679999999999999999999998876   6777777643

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.14  E-value=0.012  Score=45.28  Aligned_cols=37  Identities=11%  Similarity=0.106  Sum_probs=30.6

Q ss_pred             hhcCCeEEEEcC--CChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          62 FFRDASVFVTGG--TGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        62 ~~~~~~VlVTGa--tGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+++++++||||  ++=||.+++++|++.|.   +|++..|.
T Consensus         3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G~---~v~~~~~~   41 (260)
T PRK06997          3 FLAGKRILITGLLSNRSIAYGIAKACKREGA---ELAFTYVG   41 (260)
T ss_pred             ccCCcEEEEeCCCCCCcHHHHHHHHHHHCCC---eEEEEccc
Confidence            357899999997  56899999999999987   67776653

>KOG1203|consensus

Probab=95.95  E-value=0.0092  Score=50.59  Aligned_cols=42  Identities=29%  Similarity=0.396  Sum_probs=36.5

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+..+..+|+|+||||-+|+-+++.|+++|.   .|++++|+..+
T Consensus        74 ~~~~~~~~VlVvGatG~vG~~iv~~llkrgf---~vra~VRd~~~  115 (411)
T KOG1203|consen   74 NNSKKPTTVLVVGATGKVGRRIVKILLKRGF---SVRALVRDEQK  115 (411)
T ss_pred             CCCCCCCeEEEecCCCchhHHHHHHHHHCCC---eeeeeccChhh
Confidence            3445667999999999999999999999996   79999998655

>KOG1431|consensus

Probab=95.93  E-value=0.024  Score=45.58  Aligned_cols=26  Identities=31%  Similarity=0.523  Sum_probs=24.0

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPH   91 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~   91 (121)
                      ++|+|||++|++|++|.+.+..++++
T Consensus         2 ~kIlVtGg~GLVGsAi~~vv~~q~~~   27 (315)
T KOG1431|consen    2 KKILVTGGTGLVGSAIVKVVQEQGFD   27 (315)
T ss_pred             ceEEEecCCchHHHHHHHHHHhcCCC
Confidence            68999999999999999999998863

>KOG4039|consensus

Probab=95.90  E-value=0.011  Score=45.94  Aligned_cols=38  Identities=32%  Similarity=0.598  Sum_probs=34.6

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ++++..+|.||||..|+.+++.++.+ +...+|+++.|.
T Consensus        16 mq~~s~fvlGAtG~~G~~llk~~~E~-~~FSKV~~i~RR   53 (238)
T KOG4039|consen   16 MQNMSGFVLGATGLCGGGLLKHAQEA-PQFSKVYAILRR   53 (238)
T ss_pred             hhccceEEEeccccccHHHHHHHHhc-ccceeEEEEEec
Confidence            57899999999999999999999998 567899999996

>KOG1208|consensus

Probab=95.83  E-value=0.021  Score=46.53  Aligned_cols=38  Identities=24%  Similarity=0.211  Sum_probs=34.7

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+++++|||||.=||.+.+++|+..|.   +|+...|+.
T Consensus        32 ~~~~~~~vVTGansGIG~eta~~La~~Ga---~Vv~~~R~~   69 (314)
T KOG1208|consen   32 DLSGKVALVTGATSGIGFETARELALRGA---HVVLACRNE   69 (314)
T ss_pred             cCCCcEEEEECCCCchHHHHHHHHHhCCC---EEEEEeCCH
Confidence            45679999999999999999999999985   899999986

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=95.82  E-value=0.016  Score=48.70  Aligned_cols=36  Identities=28%  Similarity=0.431  Sum_probs=32.4

Q ss_pred             hcCCeEEEEcC----------------CChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGG----------------TGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGa----------------tGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +++++|+||||                +|.+|.++++++.+.|.   +|+++.++
T Consensus       186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga---~V~~v~~~  237 (399)
T PRK05579        186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGA---DVTLVSGP  237 (399)
T ss_pred             cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCC---EEEEeCCC
Confidence            57899999999                99999999999999997   68877765

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.80  E-value=0.02  Score=47.03  Aligned_cols=35  Identities=29%  Similarity=0.328  Sum_probs=27.6

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      .+|+|+||||++|.++++.|.++++...++..+..
T Consensus         5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s   39 (336)
T PRK05671          5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLAS   39 (336)
T ss_pred             CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEEC
Confidence            58999999999999999999976544445555543

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=95.75  E-value=0.021  Score=46.58  Aligned_cols=37  Identities=24%  Similarity=0.256  Sum_probs=29.6

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCC----ccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPH----LKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~----~~~V~~l~R~~  102 (121)
                      .+|+||||+|++|++++..|+..+-.    ..+|++++|.+
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~   43 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPP   43 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCC
Confidence            47999999999999999999885420    12799999854

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=95.69  E-value=0.037  Score=43.72  Aligned_cols=37  Identities=19%  Similarity=0.341  Sum_probs=33.2

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.|-+|+||||+.-||..+.+++.+.|.   +|++..|+.
T Consensus         3 ~tgnTiLITGG~sGIGl~lak~f~elgN---~VIi~gR~e   39 (245)
T COG3967           3 TTGNTILITGGASGIGLALAKRFLELGN---TVIICGRNE   39 (245)
T ss_pred             ccCcEEEEeCCcchhhHHHHHHHHHhCC---EEEEecCcH
Confidence            4678999999999999999999999986   799999964

>PRK06732 phosphopantothenate--cysteine ligase; Validated

Probab=95.69  E-value=0.02  Score=44.32  Aligned_cols=27  Identities=33%  Similarity=0.464  Sum_probs=23.8

Q ss_pred             cCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          72 GGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        72 GatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+|||+|.+++++|++.|+   +|+++.|.
T Consensus        23 ~SSG~iG~aLA~~L~~~G~---~V~li~r~   49 (229)
T PRK06732         23 HSTGQLGKIIAETFLAAGH---EVTLVTTK   49 (229)
T ss_pred             ccchHHHHHHHHHHHhCCC---EEEEEECc
Confidence            5799999999999999987   68888764

>KOG0725|consensus

Probab=95.59  E-value=0.035  Score=44.08  Aligned_cols=40  Identities=23%  Similarity=0.296  Sum_probs=36.0

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.+|.++||||+.=||..++++|++.|.   +|++..|+...
T Consensus         5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga---~v~i~~r~~~~   44 (270)
T KOG0725|consen    5 RLAGKVALVTGGSSGIGKAIALLLAKAGA---KVVITGRSEER   44 (270)
T ss_pred             cCCCcEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHH
Confidence            46899999999999999999999999987   79999997554

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.58  E-value=0.023  Score=46.43  Aligned_cols=35  Identities=26%  Similarity=0.385  Sum_probs=28.2

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++|+|+||||++|+++++.|+.+ |. .++..+.++.
T Consensus         4 ~~V~I~GatG~iG~~l~~~L~~~-p~-~el~~~~~s~   38 (349)
T PRK08664          4 LKVGILGATGMVGQRFVQLLANH-PW-FEVTALAASE   38 (349)
T ss_pred             cEEEEECCCCHHHHHHHHHHHcC-CC-ceEEEEEcCh
Confidence            68999999999999999999876 43 3677775543

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=95.56  E-value=0.02  Score=45.45  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=30.8

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      |+|+|+||||. |..++++|.+.++   +|++.+|+..+
T Consensus         1 m~ILvlGGT~e-gr~la~~L~~~g~---~v~~s~~t~~~   35 (256)
T TIGR00715         1 MTVLLMGGTVD-SRAIAKGLIAQGI---EILVTVTTSEG   35 (256)
T ss_pred             CeEEEEechHH-HHHHHHHHHhCCC---eEEEEEccCCc
Confidence            57999999999 9999999999886   78888887654

This enzyme was found to be a monomer by gel filtration.

>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]

Probab=95.52  E-value=0.023  Score=46.81  Aligned_cols=36  Identities=28%  Similarity=0.242  Sum_probs=32.9

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +|+.+|||-||.-|++|.+.|+..|+   .|+.+.|..+
T Consensus         2 ~K~ALITGITGQDGsYLa~lLLekGY---~VhGi~Rrss   37 (345)
T COG1089           2 GKVALITGITGQDGSYLAELLLEKGY---EVHGIKRRSS   37 (345)
T ss_pred             CceEEEecccCCchHHHHHHHHhcCc---EEEEEeeccc
Confidence            57899999999999999999999998   7999999643

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=95.46  E-value=0.03  Score=45.13  Aligned_cols=35  Identities=20%  Similarity=0.187  Sum_probs=30.6

Q ss_pred             hcCCeEEEEcC--CChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGG--TGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGa--tGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ++||+++||||  +.-||..+++.|++.|.   +|++ .|.
T Consensus         7 l~gk~alITGa~~s~GIG~a~A~~la~~Ga---~Vv~-~~~   43 (303)
T PLN02730          7 LRGKRAFIAGVADDNGYGWAIAKALAAAGA---EILV-GTW   43 (303)
T ss_pred             CCCCEEEEeCCCCCCcHHHHHHHHHHHCCC---EEEE-EeC
Confidence            68999999999  78899999999999987   6766 554

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=95.44  E-value=0.049  Score=38.65  Aligned_cols=41  Identities=20%  Similarity=0.230  Sum_probs=34.4

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .-+++++++|.|| |-.|+.++.+|...+.  .+|+++.|+..+
T Consensus         8 ~~l~~~~vlviGa-Gg~ar~v~~~L~~~g~--~~i~i~nRt~~r   48 (135)
T PF01488_consen    8 GDLKGKRVLVIGA-GGAARAVAAALAALGA--KEITIVNRTPER   48 (135)
T ss_dssp             STGTTSEEEEESS-SHHHHHHHHHHHHTTS--SEEEEEESSHHH
T ss_pred             CCcCCCEEEEECC-HHHHHHHHHHHHHcCC--CEEEEEECCHHH
Confidence            3568999999998 5589999999999976  489999997543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>KOG1201|consensus

Probab=95.38  E-value=0.059  Score=44.05  Aligned_cols=41  Identities=20%  Similarity=0.331  Sum_probs=35.5

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .-+.|+.|+||||++=+|..++.++++.+.   ++.+.+.+..+
T Consensus        34 k~v~g~~vLITGgg~GlGr~ialefa~rg~---~~vl~Din~~~   74 (300)
T KOG1201|consen   34 KSVSGEIVLITGGGSGLGRLIALEFAKRGA---KLVLWDINKQG   74 (300)
T ss_pred             hhccCCEEEEeCCCchHHHHHHHHHHHhCC---eEEEEeccccc
Confidence            346889999999999999999999999986   68888887655

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=95.34  E-value=0.028  Score=46.03  Aligned_cols=35  Identities=23%  Similarity=0.342  Sum_probs=27.8

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +|+|.||||++|.++++.|.++++...++..+.+.
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~   35 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASD   35 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecc
Confidence            48999999999999999998865554566666554

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>KOG1207|consensus

Probab=95.21  E-value=0.031  Score=43.42  Aligned_cols=42  Identities=24%  Similarity=0.296  Sum_probs=37.0

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +.++.|+.|++||+.--||+.++.+|.+.|.   +|+++.|.+..
T Consensus         2 ~t~laG~~vlvTgagaGIG~~~v~~La~aGA---~ViAvaR~~a~   43 (245)
T KOG1207|consen    2 KTSLAGVIVLVTGAGAGIGKEIVLSLAKAGA---QVIAVARNEAN   43 (245)
T ss_pred             cccccceEEEeecccccccHHHHHHHHhcCC---EEEEEecCHHH
Confidence            3467899999999999999999999999987   89999997543

>PLN00015 protochlorophyllide reductase

Probab=95.21  E-value=0.029  Score=44.28  Aligned_cols=31  Identities=19%  Similarity=0.229  Sum_probs=27.7

Q ss_pred             EEEcCCChHHHHHHHHHHHhC-CCccEEEEEecCC
Q psy3445          69 FVTGGTGFMGKILVEKLLRAI-PHLKHIYLLVRPK  102 (121)
Q Consensus        69 lVTGatGfIGs~ll~~Ll~~~-~~~~~V~~l~R~~  102 (121)
                      +||||++-||.+++++|++.| .   +|++..|+.
T Consensus         1 lITGas~GIG~aia~~l~~~G~~---~V~~~~r~~   32 (308)
T PLN00015          1 IITGASSGLGLATAKALAETGKW---HVVMACRDF   32 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHCCCC---EEEEEeCCH
Confidence            589999999999999999998 5   788888864

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=95.15  E-value=0.038  Score=46.18  Aligned_cols=36  Identities=22%  Similarity=0.433  Sum_probs=30.2

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ..++|.|.||||++|.++++.|..+ |. .+|..+.+.
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~h-P~-~el~~l~s~   72 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANH-PD-FEITVMTAD   72 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhC-CC-CeEEEEECh
Confidence            4568999999999999999999888 44 378888874

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=94.98  E-value=0.061  Score=44.34  Aligned_cols=36  Identities=22%  Similarity=0.248  Sum_probs=27.8

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      ..+|+|.||||++|.++++.|.++++...++..+..
T Consensus         7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las   42 (344)
T PLN02383          7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLAS   42 (344)
T ss_pred             CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEc
Confidence            468999999999999999999886544345554443

>KOG2865|consensus

Probab=94.91  E-value=0.038  Score=45.76  Aligned_cols=37  Identities=27%  Similarity=0.438  Sum_probs=31.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.|-.+-|.|||||+|..+|.+|.+.|.   +|++-.|..
T Consensus        59 ~sGiVaTVFGAtGFlGryvvnklak~GS---QviiPyR~d   95 (391)
T KOG2865|consen   59 VSGIVATVFGATGFLGRYVVNKLAKMGS---QVIIPYRGD   95 (391)
T ss_pred             ccceEEEEecccccccHHHHHHHhhcCC---eEEEeccCC
Confidence            4556778889999999999999999987   799888854

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=94.80  E-value=0.061  Score=43.99  Aligned_cols=33  Identities=27%  Similarity=0.488  Sum_probs=26.6

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      ++|+|.||||++|.++++.|.+. |.+ ++.++.+
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~-p~~-elv~v~~   35 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNH-PEV-EIVAVTS   35 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcC-CCc-eEEEEEC
Confidence            68999999999999999999876 443 5555555

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=94.75  E-value=0.098  Score=37.56  Aligned_cols=37  Identities=22%  Similarity=0.215  Sum_probs=32.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++|.|.||+|.+|++++..|+..+ -..+++++++...
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~-l~~ei~L~D~~~~   37 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQG-LADEIVLIDINED   37 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTT-TSSEEEEEESSHH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCC-CCCceEEeccCcc
Confidence            589999999999999999999984 3578999999754

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=94.75  E-value=0.056  Score=41.11  Aligned_cols=36  Identities=33%  Similarity=0.318  Sum_probs=30.9

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      |+|.|.||+|.+|+.+...|++.++   +|.+..|+...
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~---~V~v~~r~~~~   36 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGN---KIIIGSRDLEK   36 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC---EEEEEEcCHHH
Confidence            5799999999999999999999886   68888887543

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=94.72  E-value=0.077  Score=43.73  Aligned_cols=37  Identities=24%  Similarity=0.354  Sum_probs=28.7

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      +..+|.|.||||++|.++++.|..+.+...++..+..
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS   39 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALAS   39 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEc
Confidence            4578999999999999999999985333346666554

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=94.69  E-value=0.11  Score=37.41  Aligned_cols=36  Identities=17%  Similarity=0.263  Sum_probs=27.7

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        68 VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      |.|.|+||+||+..++-+.+. |+--+|+++.=..+.
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~-~d~f~v~~Lsa~~n~   36 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKH-PDKFEVVALSAGSNI   36 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHC-TTTEEEEEEEESSTH
T ss_pred             CEEEcCCcHHHHHHHHHHHhC-CCceEEEEEEcCCCH
Confidence            578999999999999988887 443477777764433

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>KOG0747|consensus

Probab=94.55  E-value=0.034  Score=45.66  Aligned_cols=32  Identities=31%  Similarity=0.720  Sum_probs=27.1

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEE
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIY   96 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~   96 (121)
                      .+.++||||.||||++.+..+....|+...+.
T Consensus         6 ~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~   37 (331)
T KOG0747|consen    6 EKNVLITGGAGFIGSNFINYLVDKYPDYKFVN   37 (331)
T ss_pred             cceEEEecCcCcchhhhhhhcccCCCCCcEEE
Confidence            38899999999999999999999877754433

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=94.53  E-value=0.063  Score=44.02  Aligned_cols=30  Identities=30%  Similarity=0.555  Sum_probs=24.5

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEE
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYL   97 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~   97 (121)
                      ++|+|.||||++|..+++.|.++ |.+ ++..
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~h-P~~-el~~   30 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNH-PEV-EITY   30 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcC-CCc-eEEE
Confidence            47999999999999999999876 553 4553

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=94.43  E-value=0.16  Score=40.56  Aligned_cols=37  Identities=14%  Similarity=0.091  Sum_probs=31.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++|+|| |-+|..++..|+..|.  ++|+++.|+.
T Consensus       124 ~~~k~vlI~GA-GGagrAia~~La~~G~--~~V~I~~R~~  160 (289)
T PRK12548        124 VKGKKLTVIGA-GGAATAIQVQCALDGA--KEITIFNIKD  160 (289)
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCC--CEEEEEeCCc
Confidence            35789999999 6889999999999876  3799999975

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=94.42  E-value=0.094  Score=42.32  Aligned_cols=36  Identities=31%  Similarity=0.419  Sum_probs=30.9

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++|.|+||||++|..++..|+..+. ..+|++++|..
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~-~~~v~lvd~~~   36 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDV-VKEINLISRPK   36 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEECcc
Confidence            5899999999999999999999864 24799999954

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>KOG1014|consensus

Probab=94.30  E-value=0.12  Score=42.59  Aligned_cols=41  Identities=24%  Similarity=0.297  Sum_probs=35.2

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.+. +-.+|||||.=||++..++|+++|.   +|+++.|+.++
T Consensus        45 ~~~~g-~WAVVTGaTDGIGKayA~eLAkrG~---nvvLIsRt~~K   85 (312)
T KOG1014|consen   45 KEKLG-SWAVVTGATDGIGKAYARELAKRGF---NVVLISRTQEK   85 (312)
T ss_pred             HHhcC-CEEEEECCCCcchHHHHHHHHHcCC---EEEEEeCCHHH
Confidence            33444 7789999999999999999999998   69999998765

>PRK05086 malate dehydrogenase; Provisional

Probab=94.28  E-value=0.11  Score=42.13  Aligned_cols=38  Identities=24%  Similarity=0.225  Sum_probs=29.6

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+|+|.||+|.+|++++..+.........++++.|++.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~   38 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV   38 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC
Confidence            68999999999999999988663333347888888643

>KOG1372|consensus

Probab=94.11  E-value=0.16  Score=41.47  Aligned_cols=50  Identities=24%  Similarity=0.302  Sum_probs=39.4

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHHHHhhcc
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDR  118 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~e~~~~~  118 (121)
                      .|..+|||-||-=|+++.+.|+..|+   +|..+.|..+... ..|+..+..++
T Consensus        28 rkvALITGItGQDGSYLaEfLL~KgY---eVHGiiRRsSsFN-T~RIeHlY~nP   77 (376)
T KOG1372|consen   28 RKVALITGITGQDGSYLAEFLLSKGY---EVHGIIRRSSSFN-TARIEHLYSNP   77 (376)
T ss_pred             ceEEEEecccCCCchHHHHHHHhCCc---eeeEEEeeccccc-hhhhhhhhcCc
Confidence            34678999999999999999999998   7999999765543 45676555543

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=94.07  E-value=0.11  Score=39.26  Aligned_cols=40  Identities=23%  Similarity=0.314  Sum_probs=34.1

Q ss_pred             hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ..+.+++.+|+|.|++| +|+++++.|+..|.  .++++++.+
T Consensus        13 ~q~~L~~s~VlviG~gg-lGsevak~L~~~GV--g~i~lvD~d   52 (198)
T cd01485          13 AQNKLRSAKVLIIGAGA-LGAEIAKNLVLAGI--DSITIVDHR   52 (198)
T ss_pred             HHHHHhhCcEEEECCCH-HHHHHHHHHHHcCC--CEEEEEECC
Confidence            34567889999999999 99999999999976  488888765

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=94.03  E-value=0.11  Score=42.38  Aligned_cols=32  Identities=31%  Similarity=0.509  Sum_probs=25.0

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEe
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLV   99 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~   99 (121)
                      ++|.|+||||++|+++++.|..+ +.+ +|..+.
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~-~~~-~l~~v~   32 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKH-PYF-ELAKVV   32 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC-CCc-eEEEEE
Confidence            47999999999999999988776 433 555553

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.98  E-value=0.12  Score=41.47  Aligned_cols=35  Identities=17%  Similarity=0.054  Sum_probs=29.8

Q ss_pred             hhcCCeEEEEcCC--ChHHHHHHHHHHHhCCCccEEEEEe
Q psy3445          62 FFRDASVFVTGGT--GFMGKILVEKLLRAIPHLKHIYLLV   99 (121)
Q Consensus        62 ~~~~~~VlVTGat--GfIGs~ll~~Ll~~~~~~~~V~~l~   99 (121)
                      .+++|+++||||+  .-||.+++++|++.|.   +|++..
T Consensus         5 ~~~gk~alITGa~~~~GIG~a~A~~la~~Ga---~Vvv~~   41 (299)
T PRK06300          5 DLTGKIAFIAGIGDDQGYGWGIAKALAEAGA---TILVGT   41 (299)
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHHCCC---EEEEEe
Confidence            3578999999995  7899999999999997   676654

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=93.49  E-value=0.25  Score=34.69  Aligned_cols=39  Identities=15%  Similarity=0.231  Sum_probs=31.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .++++++|+|+ |.+|..+++.|++.+.  .+|++..|+...
T Consensus        17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~--~~v~v~~r~~~~   55 (155)
T cd01065          17 LKGKKVLILGA-GGAARAVAYALAELGA--AKIVIVNRTLEK   55 (155)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCCC--CEEEEEcCCHHH
Confidence            45789999998 8999999999998752  379998887543

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=93.31  E-value=0.18  Score=38.12  Aligned_cols=39  Identities=21%  Similarity=0.313  Sum_probs=33.4

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+.+++++|+|.|++| +|+++++.|...|-  .++.+++.+
T Consensus        16 Q~~L~~s~VlIiG~gg-lG~evak~La~~GV--g~i~lvD~d   54 (197)
T cd01492          16 QKRLRSARILLIGLKG-LGAEIAKNLVLSGI--GSLTILDDR   54 (197)
T ss_pred             HHHHHhCcEEEEcCCH-HHHHHHHHHHHcCC--CEEEEEECC
Confidence            4567889999999888 99999999999976  488888764

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=93.24  E-value=0.22  Score=39.28  Aligned_cols=39  Identities=15%  Similarity=0.265  Sum_probs=32.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +.+++++|+|+ |-+|..++.+|...+.  .+|+++.|+..+
T Consensus       121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g~--~~V~v~~R~~~~  159 (278)
T PRK00258        121 LKGKRILILGA-GGAARAVILPLLDLGV--AEITIVNRTVER  159 (278)
T ss_pred             CCCCEEEEEcC-cHHHHHHHHHHHHcCC--CEEEEEeCCHHH
Confidence            46789999997 8899999999999874  389999998543

>PLN00106 malate dehydrogenase

Probab=93.10  E-value=0.25  Score=40.49  Aligned_cols=37  Identities=19%  Similarity=0.117  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++|.|+||+|.+|+.++..|+..+. +.++.++++.+
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~~-~~el~L~Di~~   54 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNPL-VSELHLYDIAN   54 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC-CCEEEEEecCC
Confidence            36899999999999999999887643 35899998865

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.02  E-value=0.23  Score=36.98  Aligned_cols=37  Identities=22%  Similarity=0.282  Sum_probs=32.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.+++|+|.|+++++|.-++..|.+.+.   +|++..|..
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~L~~~g~---~V~v~~r~~   78 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAALLLNRNA---TVTVCHSKT   78 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhCCC---EEEEEECCc
Confidence            6889999999998999999999999875   688888874

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=93.02  E-value=0.15  Score=41.74  Aligned_cols=34  Identities=21%  Similarity=0.357  Sum_probs=26.9

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      -+|.|.||+||.|.++++.|..+ |++.-+.+..+
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~H-P~~el~~l~s~   35 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGR-DDIELLSIAPD   35 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCC-CCeEEEEEecc
Confidence            36999999999999999999998 76544444444

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.96  E-value=0.18  Score=41.74  Aligned_cols=36  Identities=19%  Similarity=0.218  Sum_probs=32.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++|+|+|+++ +|..+++.|++.|+   +|++..+..
T Consensus         3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G~---~V~~~d~~~   38 (450)
T PRK14106          3 LKGKKVLVVGAGV-SGLALAKFLKKLGA---KVILTDEKE   38 (450)
T ss_pred             cCCCEEEEECCCH-HHHHHHHHHHHCCC---EEEEEeCCc
Confidence            4789999999999 99999999999998   788888864

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=92.75  E-value=0.18  Score=42.09  Aligned_cols=39  Identities=28%  Similarity=0.482  Sum_probs=28.7

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCc
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGK  105 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~  105 (121)
                      .+|+|.||+|+.|.+|++.|..+ |++....+..|...++
T Consensus         3 ~kV~IvGasGYtG~EL~rlL~~H-p~ve~~~~ss~~~~g~   41 (349)
T COG0002           3 IKVGIVGASGYTGLELLRLLAGH-PDVELILISSRERAGK   41 (349)
T ss_pred             ceEEEEcCCCCcHHHHHHHHhcC-CCeEEEEeechhhcCC
Confidence            58999999999999999999988 6665333333432333

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=92.71  E-value=0.32  Score=34.01  Aligned_cols=36  Identities=25%  Similarity=0.440  Sum_probs=29.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++|+|.|++|-.|+.+++.+.+. ++..-+.++.|..
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~-~~~~lv~~v~~~~   36 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILES-PGFELVGAVDRKP   36 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHS-TTEEEEEEEETTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhc-CCcEEEEEEecCC
Confidence            47999999999999999999996 4544566777765

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=92.57  E-value=0.16  Score=42.86  Aligned_cols=36  Identities=22%  Similarity=0.363  Sum_probs=31.6

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++|+|.|| |.+|+.+++.|++++.  .+|++..|+..+
T Consensus         2 ~~ilviGa-G~Vg~~va~~la~~~d--~~V~iAdRs~~~   37 (389)
T COG1748           2 MKILVIGA-GGVGSVVAHKLAQNGD--GEVTIADRSKEK   37 (389)
T ss_pred             CcEEEECC-chhHHHHHHHHHhCCC--ceEEEEeCCHHH
Confidence            67999999 9999999999999974  489999998654

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=92.51  E-value=0.25  Score=41.47  Aligned_cols=36  Identities=28%  Similarity=0.480  Sum_probs=30.9

Q ss_pred             hcCCeEEEEcC----------------CChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGG----------------TGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGa----------------tGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ++|++|+||||                +|.+|..+++++...|.   +|+++.+.
T Consensus       183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga---~V~~~~g~  234 (390)
T TIGR00521       183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGA---DVTLITGP  234 (390)
T ss_pred             cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCC---EEEEeCCC
Confidence            67899999988                47899999999999997   67777664

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=92.49  E-value=0.24  Score=40.64  Aligned_cols=41  Identities=24%  Similarity=0.273  Sum_probs=34.5

Q ss_pred             hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      -.+.+++++|+|.|++| +|++++..|++.|.  .++.+++++.
T Consensus        18 ~Q~~L~~~~VlIiG~Gg-lGs~va~~La~aGv--g~i~lvD~D~   58 (338)
T PRK12475         18 GQRKIREKHVLIVGAGA-LGAANAEALVRAGI--GKLTIADRDY   58 (338)
T ss_pred             HHHhhcCCcEEEECCCH-HHHHHHHHHHHcCC--CEEEEEcCCc
Confidence            34567889999999866 89999999999976  4899888864

>KOG4169|consensus

Probab=92.49  E-value=0.18  Score=40.40  Aligned_cols=49  Identities=24%  Similarity=0.299  Sum_probs=35.6

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHHHH
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAI  114 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~e~  114 (121)
                      ++||.+++||+.|=||...+.+|+..+-  +.+.++.|-+. ..+...+.+.
T Consensus         3 ~tGKna~vtggagGIGl~~sk~Ll~kgi--k~~~i~~~~En-~~a~akL~ai   51 (261)
T KOG4169|consen    3 LTGKNALVTGGAGGIGLATSKALLEKGI--KVLVIDDSEEN-PEAIAKLQAI   51 (261)
T ss_pred             ccCceEEEecCCchhhHHHHHHHHHcCc--hheeehhhhhC-HHHHHHHhcc
Confidence            4699999999999999999999999865  35555555443 3334444443

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=92.42  E-value=0.28  Score=40.19  Aligned_cols=34  Identities=21%  Similarity=0.407  Sum_probs=26.5

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+|.|.||||++|.++++.|.++ |.+ ++..+..+
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~h-p~~-~l~~~~s~   36 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGR-SDI-ELLSIPEA   36 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcC-CCe-EEEEEecC
Confidence            57999999999999999988887 554 45555443

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=92.14  E-value=0.29  Score=37.20  Aligned_cols=41  Identities=24%  Similarity=0.237  Sum_probs=34.5

Q ss_pred             chhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          58 PIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        58 ~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +..+.++.++|+|.|++| +|+.++..|++.|.  .++++++++
T Consensus        14 ~~q~~L~~~~V~IvG~Gg-lGs~ia~~La~~Gv--g~i~lvD~D   54 (200)
T TIGR02354        14 KIVQKLEQATVAICGLGG-LGSNVAINLARAGI--GKLILVDFD   54 (200)
T ss_pred             HHHHHHhCCcEEEECcCH-HHHHHHHHHHHcCC--CEEEEECCC
Confidence            456678889999999965 89999999999976  478888876

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=92.13  E-value=0.33  Score=40.28  Aligned_cols=36  Identities=28%  Similarity=0.382  Sum_probs=26.3

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHh-CCCccEEEEEec
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRA-IPHLKHIYLLVR  100 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~-~~~~~~V~~l~R  100 (121)
                      +.+|.|.||||++|..+++.|..+ .-.+.++..+.-
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS   41 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSS   41 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEEC
Confidence            468999999999999999988854 222334555553

>KOG2015|consensus

Probab=92.04  E-value=0.47  Score=39.86  Aligned_cols=60  Identities=18%  Similarity=0.155  Sum_probs=43.0

Q ss_pred             ChhhhhCCCCCCCCCCCCCCCCCcchhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEe
Q psy3445          34 DPLQLLGEKNFGRPRKIPKDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLV   99 (121)
Q Consensus        34 ~~~dLl~r~~~~~~~~~~~~~~~~~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~   99 (121)
                      .+..+|.|+.+...+...   ...+-.+++.+.+|+|.||+| +|.++++.|+-.|..  ++.+++
T Consensus        12 ~~~~~l~r~gpf~~~~f~---~~~e~l~~l~~~kiLviGAGG-LGCElLKnLal~gF~--~~~viD   71 (422)
T KOG2015|consen   12 GWRQSLERPGPFNLDAFE---PSEENLEFLQDCKILVIGAGG-LGCELLKNLALSGFR--QLHVID   71 (422)
T ss_pred             HHHHHhcCCCCCCCCCCC---CCHHHHHHHhhCcEEEEccCc-ccHHHHHhHHhhccc--eeEEEe
Confidence            345567776544433332   555677888889999999998 599999999998764  565555

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=91.92  E-value=0.4  Score=36.30  Aligned_cols=36  Identities=25%  Similarity=0.265  Sum_probs=30.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++|.|. |-+|+++++.|.+.|.   +|++..++.
T Consensus        26 l~gk~v~I~G~-G~vG~~~A~~L~~~G~---~Vvv~D~~~   61 (200)
T cd01075          26 LEGKTVAVQGL-GKVGYKLAEHLLEEGA---KLIVADINE   61 (200)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            57899999999 4799999999999987   688777763

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK06849 hypothetical protein; Provisional

Probab=91.80  E-value=0.46  Score=38.85  Aligned_cols=38  Identities=18%  Similarity=0.086  Sum_probs=32.6

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +.|+|+|||++..+|-.+++.|.+.|.   +|+++...+..
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~---~Vi~~d~~~~~   40 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGH---TVILADSLKYP   40 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCchH
Confidence            458999999999999999999999987   78888776543

>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Probab=91.73  E-value=0.41  Score=40.48  Aligned_cols=36  Identities=22%  Similarity=0.361  Sum_probs=27.7

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+|.|.|+||+||+..++-+.+. ++--+|.++.=..
T Consensus         2 k~i~IlGsTGSIG~qtL~Vi~~~-~~~f~v~~Laa~~   37 (389)
T TIGR00243         2 KQIVILGSTGSIGKSTLDVVRHN-PDHFQVVALSAGK   37 (389)
T ss_pred             ceEEEEecChHHHHHHHHHHHhC-ccccEEEEEEcCC
Confidence            68999999999999999887765 4323677776544

1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.

>PRK08655 prephenate dehydrogenase; Provisional

Probab=91.66  E-value=0.36  Score=40.85  Aligned_cols=35  Identities=26%  Similarity=0.282  Sum_probs=30.7

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+|.|.||+|.+|..++..|.+.|.   +|++..|++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~---~V~v~~r~~~   35 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGF---EVIVTGRDPK   35 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCC---EEEEEECChH
Confidence            5799999999999999999999876   6888888754

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=91.62  E-value=0.6  Score=37.46  Aligned_cols=38  Identities=16%  Similarity=0.161  Sum_probs=31.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++|.||+|- ++.++..|+..+.  .+|+++.|+..
T Consensus       122 ~~~k~vlvlGaGGa-arAi~~~l~~~g~--~~i~i~nRt~~  159 (288)
T PRK12749        122 IKGKTMVLLGAGGA-STAIGAQGAIEGL--KEIKLFNRRDE  159 (288)
T ss_pred             cCCCEEEEECCcHH-HHHHHHHHHHCCC--CEEEEEeCCcc
Confidence            46789999999887 8899999988765  48999999854

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=91.47  E-value=0.43  Score=33.39  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=27.3

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ++++|+|.|++ -+|++++..|++.|.  .++.+++.+
T Consensus         1 r~~~v~iiG~G-~vGs~va~~L~~~Gv--~~i~lvD~d   35 (135)
T PF00899_consen    1 RNKRVLIIGAG-GVGSEVAKNLARSGV--GKITLVDDD   35 (135)
T ss_dssp             HT-EEEEESTS-HHHHHHHHHHHHHTT--SEEEEEESS
T ss_pred             CCCEEEEECcC-HHHHHHHHHHHHhCC--CceeecCCc
Confidence            35788887765 589999999999976  488888864

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=91.42  E-value=0.36  Score=39.97  Aligned_cols=35  Identities=20%  Similarity=0.375  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++|.|.||.|.+|..++..|.+.|+   .|++..|+.
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~G~---~V~~~d~~~  132 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLSGY---QVRILEQDD  132 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHCCC---eEEEeCCCc
Confidence            47899999999999999999999987   688888854

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=91.34  E-value=0.51  Score=36.97  Aligned_cols=36  Identities=33%  Similarity=0.477  Sum_probs=27.2

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++|+|+|++|.+|+.+++.+.+. +++.-+.++.++.
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~-~~~elvav~d~~~   37 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAA-EDLELVAAVDRPG   37 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCC
Confidence            58999999999999999888765 4444455566654

>PTZ00325 malate dehydrogenase; Provisional

Probab=91.27  E-value=0.44  Score=39.01  Aligned_cols=38  Identities=21%  Similarity=0.155  Sum_probs=30.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+.++|.|+||+|.+|+.+...|+..+. ..++.++++.
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~-~~elvL~Di~   43 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPH-VSELSLYDIV   43 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCC-CCEEEEEecC
Confidence            4567999999999999999998886542 3589999884

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=91.18  E-value=0.55  Score=36.21  Aligned_cols=36  Identities=19%  Similarity=0.251  Sum_probs=31.0

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+++|+||+|.+|..+++.+...|.   +|+++.|+.
T Consensus       162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~---~v~~~~~~~  197 (332)
T cd08259         162 KGDTVLVTGAGGGVGIHAIQLAKALGA---RVIAVTRSP  197 (332)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCC---eEEEEeCCH
Confidence            467999999999999999999988876   688888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.17  E-value=0.37  Score=39.93  Aligned_cols=36  Identities=14%  Similarity=0.127  Sum_probs=31.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++|+|||++| +|...++.|++.|.   +|++..+..
T Consensus         3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~---~V~~~d~~~   38 (447)
T PRK02472          3 YQNKKVLVLGLAK-SGYAAAKLLHKLGA---NVTVNDGKP   38 (447)
T ss_pred             cCCCEEEEEeeCH-HHHHHHHHHHHCCC---EEEEEcCCC
Confidence            4689999999999 99999999999987   688887754

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=91.12  E-value=0.46  Score=39.44  Aligned_cols=35  Identities=31%  Similarity=0.420  Sum_probs=28.7

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      ++|.|.||||.+|+.+++.|..+.+.+..+.++..
T Consensus         2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS   36 (334)
T COG0136           2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLAS   36 (334)
T ss_pred             cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEec
Confidence            57999999999999999999997676665555544

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=91.11  E-value=0.58  Score=39.50  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=27.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      |+|.|.|+||+||...++.+.+. |+--+|.++.-+
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~-p~~f~VvaLaa~   36 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRN-PDRFRVVALSAG   36 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhC-ccccEEEEEEcC
Confidence            68999999999999999887765 433477777643

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=91.05  E-value=0.45  Score=39.05  Aligned_cols=40  Identities=28%  Similarity=0.402  Sum_probs=34.0

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ...++.++|+|.|+ |.+|++++..|.+.|.  .+|.+++++.
T Consensus        19 Q~~L~~~~VlVvG~-GglGs~va~~La~aGv--g~i~lvD~D~   58 (339)
T PRK07688         19 QQKLREKHVLIIGA-GALGTANAEMLVRAGV--GKVTIVDRDY   58 (339)
T ss_pred             HHHhcCCcEEEECC-CHHHHHHHHHHHHcCC--CeEEEEeCCc
Confidence            45678899999998 7799999999999976  4899998863

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=91.01  E-value=0.52  Score=38.40  Aligned_cols=35  Identities=23%  Similarity=0.125  Sum_probs=29.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ++|.|+||+|.+|++++..|+..+- +.++++++++
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~-~~elvLiDi~   35 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPL-VSELALYDIV   35 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-CcEEEEEecC
Confidence            5899999999999999998887753 3588888876

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=90.84  E-value=0.43  Score=38.07  Aligned_cols=34  Identities=24%  Similarity=0.298  Sum_probs=29.9

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++|.|.| .|++|+.+...|++.|+   +|++..|++.
T Consensus         3 ~~V~VIG-~G~mG~~iA~~la~~G~---~V~v~d~~~~   36 (308)
T PRK06129          3 GSVAIIG-AGLIGRAWAIVFARAGH---EVRLWDADPA   36 (308)
T ss_pred             cEEEEEC-ccHHHHHHHHHHHHCCC---eeEEEeCCHH
Confidence            4789998 99999999999999987   7999999754

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=90.81  E-value=0.47  Score=35.29  Aligned_cols=34  Identities=29%  Similarity=0.341  Sum_probs=28.0

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +|.|.|| |.+|..|+..++..|+   +|.+..+++..
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~---~V~l~d~~~~~   34 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGY---EVTLYDRSPEA   34 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTS---EEEEE-SSHHH
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCC---cEEEEECChHH
Confidence            5788888 9999999999999988   79999997554

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK08328 hypothetical protein; Provisional

Probab=90.74  E-value=0.53  Score=36.42  Aligned_cols=41  Identities=29%  Similarity=0.242  Sum_probs=33.2

Q ss_pred             hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ....+++.+|+|.|++| +|++++..|++.|.  .++++++.+.
T Consensus        21 ~q~~L~~~~VlIiG~GG-lGs~ia~~La~~Gv--g~i~lvD~D~   61 (231)
T PRK08328         21 GQEKLKKAKVAVVGVGG-LGSPVAYYLAAAGV--GRILLIDEQT   61 (231)
T ss_pred             HHHHHhCCcEEEECCCH-HHHHHHHHHHHcCC--CEEEEEcCCc
Confidence            34567889999998877 69999999999976  4888887643

>KOG1611|consensus

Probab=90.66  E-value=0.57  Score=37.35  Aligned_cols=39  Identities=31%  Similarity=0.391  Sum_probs=31.6

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .++|+||||+-=||-.++++|++. +++..+++-.|++..
T Consensus         3 pksv~ItGaNRGIGlgLVk~llk~-~~i~~iiat~r~~e~   41 (249)
T KOG1611|consen    3 PKSVFITGANRGIGLGLVKELLKD-KGIEVIIATARDPEK   41 (249)
T ss_pred             CccEEEeccCcchhHHHHHHHhcC-CCcEEEEEecCChHH
Confidence            356999999999999999999987 555567777776655

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=90.66  E-value=0.59  Score=31.97  Aligned_cols=33  Identities=27%  Similarity=0.551  Sum_probs=25.0

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEE-ecC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLL-VRP  101 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l-~R~  101 (121)
                      ++.|+|++|.+|.+++..+... +++ +++++ .|.
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~-~~~-~l~av~~~~   34 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEH-PDF-EVVALAASA   34 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcC-CCc-eEEEEEech
Confidence            4789999999999999999886 333 45555 443

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=90.63  E-value=0.81  Score=33.71  Aligned_cols=39  Identities=21%  Similarity=0.178  Sum_probs=32.7

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.+++|.|.|. |-||+.+++.+...|.   +|++..|....
T Consensus        33 ~l~g~tvgIiG~-G~IG~~vA~~l~~fG~---~V~~~d~~~~~   71 (178)
T PF02826_consen   33 ELRGKTVGIIGY-GRIGRAVARRLKAFGM---RVIGYDRSPKP   71 (178)
T ss_dssp             -STTSEEEEEST-SHHHHHHHHHHHHTT----EEEEEESSCHH
T ss_pred             ccCCCEEEEEEE-cCCcCeEeeeeecCCc---eeEEecccCCh
Confidence            457899999965 9999999999999987   89999998653

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=90.57  E-value=0.72  Score=36.03  Aligned_cols=40  Identities=28%  Similarity=0.186  Sum_probs=33.6

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ...+++++|+|.|+ |-+|++++..|++.|-  .++.+++.+.
T Consensus        27 Q~~L~~~~VliiG~-GglGs~va~~La~~Gv--g~i~lvD~D~   66 (245)
T PRK05690         27 QEKLKAARVLVVGL-GGLGCAASQYLAAAGV--GTLTLVDFDT   66 (245)
T ss_pred             HHHhcCCeEEEECC-CHHHHHHHHHHHHcCC--CEEEEEcCCE
Confidence            45678899999999 7799999999999875  4888887653

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=90.56  E-value=0.44  Score=38.87  Aligned_cols=35  Identities=23%  Similarity=0.403  Sum_probs=27.0

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        68 VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      |+|.|| |++|+.+++.|+++.+ ..+|++.+|+..+
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~-~~~v~va~r~~~~   35 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGP-FEEVTVADRNPEK   35 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTC-E-EEEEEESSHHH
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCC-CCcEEEEECCHHH
Confidence            789999 9999999999999854 2389999997543

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>cd00704 MDH Malate dehydrogenase

Probab=90.52  E-value=0.48  Score=38.64  Aligned_cols=35  Identities=26%  Similarity=0.310  Sum_probs=28.7

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCcc-----EEEEEecCC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLK-----HIYLLVRPK  102 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~-----~V~~l~R~~  102 (121)
                      +|+|+||+|.+|+.++..|+..+- +.     .++++++.+
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~-~~~~~~~~l~L~Di~~   41 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGEL-FGDDQPVILHLLDIPP   41 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCc-cCCCCceEEEEEecCC
Confidence            699999999999999998887643 23     488888875

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=90.30  E-value=0.66  Score=37.00  Aligned_cols=39  Identities=15%  Similarity=0.117  Sum_probs=32.2

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .++++|+|.|++| .|+.++..|+..+.  .+|+++.|+..+
T Consensus       125 ~~~k~vlIlGaGG-aaraia~aL~~~G~--~~I~I~nR~~~k  163 (284)
T PRK12549        125 ASLERVVQLGAGG-AGAAVAHALLTLGV--ERLTIFDVDPAR  163 (284)
T ss_pred             ccCCEEEEECCcH-HHHHHHHHHHHcCC--CEEEEECCCHHH
Confidence            4567999999977 89999999999865  489999997544

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=90.23  E-value=0.8  Score=35.88  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=30.4

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++++++|+|+ |-+|..++..|++.+.   +|++..|+..
T Consensus       116 ~~k~vliiGa-Gg~g~aia~~L~~~g~---~v~v~~R~~~  151 (270)
T TIGR00507       116 PNQRVLIIGA-GGAARAVALPLLKADC---NVIIANRTVS  151 (270)
T ss_pred             cCCEEEEEcC-cHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            4789999999 6899999999998864   7888888753

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=90.23  E-value=1  Score=29.31  Aligned_cols=35  Identities=29%  Similarity=0.351  Sum_probs=29.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      +.+++++|.|+ |-.|..++..+++.+.  .+|++..|
T Consensus        21 ~~~~~v~i~G~-G~~g~~~a~~l~~~~~--~~v~v~~r   55 (86)
T cd05191          21 LKGKTVVVLGA-GEVGKGIAKLLADEGG--KKVVLCDR   55 (86)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCC--CEEEEEcC
Confidence            56789999999 9999999999999853  37888777

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=90.11  E-value=0.73  Score=37.57  Aligned_cols=37  Identities=27%  Similarity=0.337  Sum_probs=30.3

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCcc-----EEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLK-----HIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~-----~V~~l~R~~  102 (121)
                      .++|.|+||+|.+|+.++..|+..+- +.     +++++++..
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~-~~~~~~~el~L~Di~~   43 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEM-FGPDQPVILQLLELPQ   43 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccc-cCCCCceEEEEEecCC
Confidence            46899999999999999999887653 34     788888843

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=89.69  E-value=0.88  Score=34.41  Aligned_cols=36  Identities=31%  Similarity=0.524  Sum_probs=25.8

Q ss_pred             hcCCeEEEEcC----------------CChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGG----------------TGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGa----------------tGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ++|++|+||+|                +|-.|.+|++.++.+|.   .|+.+...
T Consensus         1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga---~V~li~g~   52 (185)
T PF04127_consen    1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGA---EVTLIHGP   52 (185)
T ss_dssp             -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT----EEEEEE-T
T ss_pred             CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCC---EEEEEecC
Confidence            46788888855                68899999999999998   57766664

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=89.69  E-value=0.84  Score=34.70  Aligned_cols=36  Identities=22%  Similarity=0.291  Sum_probs=30.7

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+++++|+|.|| |-+|...++.|++.+.   +|+++.+.
T Consensus         7 ~l~~k~vLVIGg-G~va~~ka~~Ll~~ga---~V~VIs~~   42 (202)
T PRK06718          7 DLSNKRVVIVGG-GKVAGRRAITLLKYGA---HIVVISPE   42 (202)
T ss_pred             EcCCCEEEEECC-CHHHHHHHHHHHHCCC---eEEEEcCC
Confidence            468999999998 8899999999999986   67777764

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=89.64  E-value=0.69  Score=40.12  Aligned_cols=36  Identities=19%  Similarity=0.153  Sum_probs=30.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++|+|| |-+|+.++.+|++.|.   +|+++.|+.
T Consensus       377 ~~~k~vlIlGa-GGagrAia~~L~~~G~---~V~i~nR~~  412 (529)
T PLN02520        377 LAGKLFVVIGA-GGAGKALAYGAKEKGA---RVVIANRTY  412 (529)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            45789999999 6789999999999875   788888864

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=89.56  E-value=1.6  Score=35.35  Aligned_cols=39  Identities=15%  Similarity=0.210  Sum_probs=32.2

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++++|.|+|| |.+|+.++..|+..+- +.++++++++...
T Consensus         5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~-~~el~L~D~~~~~   43 (315)
T PRK00066          5 QHNKVVLVGD-GAVGSSYAYALVNQGI-ADELVIIDINKEK   43 (315)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCCch
Confidence            4579999998 9999999999888743 4589999997654

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=89.52  E-value=0.75  Score=37.00  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=31.6

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ++|++|+|.|++|.+|+.++..|+..+.   .|++..|.
T Consensus       157 l~Gk~vvViG~gg~vGkpia~~L~~~ga---tVtv~~~~  192 (283)
T PRK14192        157 LAGKHAVVVGRSAILGKPMAMMLLNANA---TVTICHSR  192 (283)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCC---EEEEEeCC
Confidence            5789999999999999999999998865   78877773

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=89.48  E-value=0.67  Score=47.27  Aligned_cols=38  Identities=24%  Similarity=0.205  Sum_probs=33.1

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +-++++++||||++-||..++++|++.+..  +|+++.|+
T Consensus      1994 l~~g~vvLVTGGarGIG~aiA~~LA~~~ga--~viL~gRs 2031 (2582)
T TIGR02813      1994 LNSDDVFLVTGGAKGVTFECALELAKQCQA--HFILAGRS 2031 (2582)
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHhcCC--EEEEEeCC
Confidence            456899999999999999999999998432  79999997

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase

Probab=89.34  E-value=0.94  Score=39.07  Aligned_cols=37  Identities=16%  Similarity=0.249  Sum_probs=28.0

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .-++|.|.|+||+||+..++-+.++ ++--+|.++.=.
T Consensus        56 ~~KkI~ILGSTGSIGtqtLdVI~~~-pd~f~vvaLaag   92 (454)
T PLN02696         56 GPKPISLLGSTGSIGTQTLDIVAEN-PDKFKVVALAAG   92 (454)
T ss_pred             CccEEEEecCCcHhhHHHHHHHHhC-ccccEEEEEECC
Confidence            3479999999999999999888775 442356666543

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=89.33  E-value=0.63  Score=39.01  Aligned_cols=35  Identities=14%  Similarity=0.218  Sum_probs=26.3

Q ss_pred             CeEEEEcCCChHHHHHHHHHH-HhCCCccEEEEEec
Q psy3445          66 ASVFVTGGTGFMGKILVEKLL-RAIPHLKHIYLLVR  100 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll-~~~~~~~~V~~l~R  100 (121)
                      ++|.|.||||.+|+.+++.|. ...-.+.+++++.-
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss   36 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFST   36 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEc
Confidence            478999999999999999998 43333345666654

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=89.31  E-value=0.62  Score=38.45  Aligned_cols=34  Identities=18%  Similarity=0.332  Sum_probs=29.0

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+|+|+|+ |.+|.++++.|.+.+.   .|+++.|++.
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~g~---~v~vid~~~~   34 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGENN---DVTVIDTDEE   34 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC---cEEEEECCHH
Confidence            57899988 9999999999999877   6888888653

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=89.29  E-value=0.64  Score=36.72  Aligned_cols=36  Identities=14%  Similarity=0.158  Sum_probs=29.0

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .|.+|+|+||+|-+|..++..+...|.   +|++.+++.
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~---~Vi~~~~~~  186 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQLAKLKGC---YVVGSAGSD  186 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            468999999999999998876666665   688877754

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=89.26  E-value=0.57  Score=39.26  Aligned_cols=35  Identities=17%  Similarity=0.314  Sum_probs=25.8

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCC-ccEEEEEec
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPH-LKHIYLLVR  100 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~-~~~V~~l~R  100 (121)
                      ++|.|.||||++|..+++.++....- +.++..+..
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss   37 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFST   37 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecc
Confidence            47999999999999999977776321 234555554

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=89.23  E-value=0.7  Score=36.09  Aligned_cols=40  Identities=25%  Similarity=0.246  Sum_probs=32.9

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ...+++.+|+|.|++| +|++++..|++.|-  .++++++++.
T Consensus        19 q~~L~~~~VlvvG~Gg-lGs~va~~La~~Gv--g~i~lvD~D~   58 (240)
T TIGR02355        19 QEALKASRVLIVGLGG-LGCAASQYLAAAGV--GNLTLLDFDT   58 (240)
T ss_pred             HHHHhCCcEEEECcCH-HHHHHHHHHHHcCC--CEEEEEeCCc
Confidence            4568889999998876 79999999999875  4888887753

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=89.06  E-value=0.68  Score=36.29  Aligned_cols=36  Identities=11%  Similarity=0.080  Sum_probs=28.5

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+|+|+||+|-+|..++......|.   +|++.+++.
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~---~Vi~~~~s~  173 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGC---KVVGAAGSD  173 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            468999999999999988866666654   688877754

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=89.06  E-value=1  Score=36.42  Aligned_cols=38  Identities=21%  Similarity=0.307  Sum_probs=32.4

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++++++|.||+| .+..++.+|++.+.  .+|+++.|...+
T Consensus       125 ~~~~vlilGAGG-AarAv~~aL~~~g~--~~i~V~NRt~~r  162 (283)
T COG0169         125 TGKRVLILGAGG-AARAVAFALAEAGA--KRITVVNRTRER  162 (283)
T ss_pred             CCCEEEEECCcH-HHHHHHHHHHHcCC--CEEEEEeCCHHH
Confidence            468999999988 58999999999976  489999998654

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=88.87  E-value=0.8  Score=35.76  Aligned_cols=39  Identities=31%  Similarity=0.286  Sum_probs=32.1

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+.+++.+|+|.|.+| +|+++++.|++.|-  .++++++.+
T Consensus         6 ~~~L~~~~VlVvG~GG-vGs~va~~Lar~GV--g~i~LvD~D   44 (231)
T cd00755           6 LEKLRNAHVAVVGLGG-VGSWAAEALARSGV--GKLTLIDFD   44 (231)
T ss_pred             HHHHhCCCEEEECCCH-HHHHHHHHHHHcCC--CEEEEECCC
Confidence            4567889999998776 79999999999976  488888764

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=88.72  E-value=0.87  Score=37.57  Aligned_cols=38  Identities=18%  Similarity=0.171  Sum_probs=32.3

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ..+++++|+|.|++| +|++++..|++.|.  .++++++++
T Consensus       131 ~~l~~~~VlvvG~GG-~Gs~ia~~La~~Gv--g~i~lvD~d  168 (376)
T PRK08762        131 RRLLEARVLLIGAGG-LGSPAALYLAAAGV--GTLGIVDHD  168 (376)
T ss_pred             HHHhcCcEEEECCCH-HHHHHHHHHHHcCC--CeEEEEeCC
Confidence            457889999998755 89999999999976  489998886

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=88.70  E-value=0.88  Score=37.05  Aligned_cols=35  Identities=23%  Similarity=0.138  Sum_probs=29.2

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +|.|+||+|.+|++++..|+..+ -+.++.++++.+
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~-~~~elvL~Di~~   35 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQP-YVSELSLYDIAG   35 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCC-CCcEEEEecCCC
Confidence            58999999999999999988774 345888888865

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=88.69  E-value=0.92  Score=36.32  Aligned_cols=37  Identities=16%  Similarity=0.254  Sum_probs=31.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +.+++++|.|+ |.+|..+++.|...|.   +|++..|+..
T Consensus       149 l~gk~v~IiG~-G~iG~avA~~L~~~G~---~V~v~~R~~~  185 (287)
T TIGR02853       149 IHGSNVMVLGF-GRTGMTIARTFSALGA---RVFVGARSSA  185 (287)
T ss_pred             CCCCEEEEEcC-hHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            46899999999 6699999999999886   7999999753

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=88.64  E-value=0.82  Score=35.42  Aligned_cols=36  Identities=14%  Similarity=0.122  Sum_probs=29.0

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+|+|+||+|-+|..++......|.   +|++..++.
T Consensus       143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~---~vi~~~~s~  178 (329)
T cd08294         143 AGETVVVNGAAGAVGSLVGQIAKIKGC---KVIGCAGSD  178 (329)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            468999999999999998877777765   688877654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]

Probab=88.52  E-value=1.2  Score=37.66  Aligned_cols=36  Identities=22%  Similarity=0.345  Sum_probs=28.3

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |++.|.|+||+||..-+.-+.+. |+.-+|.++.=..
T Consensus         2 k~i~iLGSTGSIG~qtLdVi~~~-p~~f~vval~ag~   37 (385)
T COG0743           2 KKLTILGSTGSIGTQTLDVIRRN-PDKFEVVALAAGK   37 (385)
T ss_pred             ceEEEEecCCchhHHHHHHHHhC-CCcEEEEEEecCC
Confidence            68999999999999999887776 5434677777554

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=88.41  E-value=1.5  Score=35.87  Aligned_cols=36  Identities=28%  Similarity=0.321  Sum_probs=30.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCcc-----EEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLK-----HIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~-----~V~~l~R~~  102 (121)
                      -+|.|+||+|.+|++++..|+..+. +.     +++++++..
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~-~~~~~~~el~L~Di~~   44 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGEL-FGKDQPVVLHLLDIPP   44 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCc-ccCCCccEEEEEecCC
Confidence            4799999999999999999888753 35     788888854

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>KOG1209|consensus

Probab=88.21  E-value=0.92  Score=36.36  Aligned_cols=37  Identities=24%  Similarity=0.323  Sum_probs=31.8

Q ss_pred             CCeEEEEcC-CChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          65 DASVFVTGG-TGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        65 ~~~VlVTGa-tGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.|+|||+ .|-||.++.+.+.+.|+   +|++..|....
T Consensus         7 ~k~VlItgcs~GGIG~ala~ef~~~G~---~V~AtaR~~e~   44 (289)
T KOG1209|consen    7 PKKVLITGCSSGGIGYALAKEFARNGY---LVYATARRLEP   44 (289)
T ss_pred             CCeEEEeecCCcchhHHHHHHHHhCCe---EEEEEccccch
Confidence            478999875 78999999999999998   89999997544

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=88.13  E-value=0.96  Score=36.39  Aligned_cols=39  Identities=33%  Similarity=0.314  Sum_probs=32.0

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+.+++.+|+|.|.+| +|+|.+++|.+.|-  .++.+++-+
T Consensus        25 lekl~~~~V~VvGiGG-VGSw~veALaRsGi--g~itlID~D   63 (263)
T COG1179          25 LEKLKQAHVCVVGIGG-VGSWAVEALARSGI--GRITLIDMD   63 (263)
T ss_pred             HHHHhhCcEEEEecCc-hhHHHHHHHHHcCC--CeEEEEecc
Confidence            3467888999999988 89999999999975  477777653

>PRK06153 hypothetical protein; Provisional

Probab=87.98  E-value=1  Score=38.17  Aligned_cols=40  Identities=13%  Similarity=0.245  Sum_probs=33.5

Q ss_pred             hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +.+.+++.+|+|.|++| +|++++..|++.|-  .++++++-+
T Consensus       170 ~q~kL~~~~VaIVG~GG-~GS~Va~~LAR~GV--geI~LVD~D  209 (393)
T PRK06153        170 LSAKLEGQRIAIIGLGG-TGSYILDLVAKTPV--REIHLFDGD  209 (393)
T ss_pred             HHHHHhhCcEEEEcCCc-cHHHHHHHHHHcCC--CEEEEECCC
Confidence            36678899999999988 69999999999975  588888754

>PRK08223 hypothetical protein; Validated

Probab=87.92  E-value=0.99  Score=36.63  Aligned_cols=41  Identities=22%  Similarity=0.165  Sum_probs=33.8

Q ss_pred             hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      -.+.+++.+|+|.|++| +|++++..|++.|-  .++.+++.+.
T Consensus        21 ~Q~kL~~s~VlIvG~GG-LGs~va~~LA~aGV--G~i~lvD~D~   61 (287)
T PRK08223         21 EQQRLRNSRVAIAGLGG-VGGIHLLTLARLGI--GKFTIADFDV   61 (287)
T ss_pred             HHHHHhcCCEEEECCCH-HHHHHHHHHHHhCC--CeEEEEeCCC
Confidence            34668889999999887 69999999999976  4888888653

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=87.89  E-value=1.8  Score=36.71  Aligned_cols=34  Identities=15%  Similarity=0.088  Sum_probs=28.2

Q ss_pred             cCCeEEEEcCCChHHHH--HHHHHHHhCCCccEEEEEecC
Q psy3445          64 RDASVFVTGGTGFMGKI--LVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~--ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+|+++||||++-+|..  ++++| +.|.   .++++.+.
T Consensus        40 ggK~aLVTGaSsGIGlA~~IA~al-~~GA---~Vi~v~~~   75 (398)
T PRK13656         40 GPKKVLVIGASSGYGLASRIAAAF-GAGA---DTLGVFFE   75 (398)
T ss_pred             CCCEEEEECCCchHhHHHHHHHHH-HcCC---eEEEEecC
Confidence            46899999999999999  88898 8876   57777753

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=87.89  E-value=1.1  Score=35.96  Aligned_cols=39  Identities=31%  Similarity=0.343  Sum_probs=31.6

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+.+++.+|+|.|++| +|+++++.|++.|-  .++++++.+
T Consensus        25 ~~kL~~s~VlVvG~GG-VGs~vae~Lar~GV--g~itLiD~D   63 (268)
T PRK15116         25 LQLFADAHICVVGIGG-VGSWAAEALARTGI--GAITLIDMD   63 (268)
T ss_pred             HHHhcCCCEEEECcCH-HHHHHHHHHHHcCC--CEEEEEeCC
Confidence            3567889999998765 89999999999975  478888764

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=87.85  E-value=2  Score=34.89  Aligned_cols=37  Identities=16%  Similarity=0.282  Sum_probs=31.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.|++|+|.|+++.+|.-+...|+..+.   .|+++.+..
T Consensus       156 l~Gk~vvVIGrs~~VG~pla~lL~~~ga---tVtv~~s~t  192 (286)
T PRK14175        156 LEGKNAVVIGRSHIVGQPVSKLLLQKNA---SVTILHSRS  192 (286)
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCC---eEEEEeCCc
Confidence            6789999999999999999999998875   677777643

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=87.43  E-value=1.6  Score=33.00  Aligned_cols=37  Identities=22%  Similarity=0.259  Sum_probs=30.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ..+++++|+|++|.+|..++..+...+.   +|++..++.
T Consensus       143 ~~g~~vlI~g~~~~~g~~~~~~a~~~g~---~v~~~~~~~  179 (325)
T cd08253         143 KAGETVLVHGGSGAVGHAAVQLARWAGA---RVIATASSA  179 (325)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            3578999999999999999988887765   688887753

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=87.39  E-value=1.5  Score=33.01  Aligned_cols=36  Identities=11%  Similarity=0.137  Sum_probs=30.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ..+.+|+|+|++|.+|..++..+...|.   +|++..++
T Consensus       138 ~~~~~vlv~g~~~~ig~~~~~~~~~~g~---~v~~~~~~  173 (323)
T cd05276         138 KAGETVLIHGGASGVGTAAIQLAKALGA---RVIATAGS  173 (323)
T ss_pred             CCCCEEEEEcCcChHHHHHHHHHHHcCC---EEEEEcCC
Confidence            3578999999999999999998888875   67777775

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal

Probab=87.19  E-value=1  Score=34.76  Aligned_cols=26  Identities=35%  Similarity=0.525  Sum_probs=22.1

Q ss_pred             cCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          72 GGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        72 GatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      .++|.+|.+++++|++.|.   +|+++.|
T Consensus        22 ~SSGgIG~AIA~~la~~Ga---~Vvlv~~   47 (227)
T TIGR02114        22 HSTGHLGKIITETFLSAGH---EVTLVTT   47 (227)
T ss_pred             CcccHHHHHHHHHHHHCCC---EEEEEcC
Confidence            4689999999999999998   6777665

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=87.12  E-value=1.4  Score=34.30  Aligned_cols=33  Identities=21%  Similarity=0.343  Sum_probs=28.2

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++|+|.|+ |.+|+.+...|.+.|+   +|.++.|+.
T Consensus         1 m~I~IiG~-G~~G~~~a~~L~~~g~---~V~~~~r~~   33 (304)
T PRK06522          1 MKIAILGA-GAIGGLFGAALAQAGH---DVTLVARRG   33 (304)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC---eEEEEECCh
Confidence            46889887 8999999999999876   699999854

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=87.01  E-value=0.84  Score=37.70  Aligned_cols=35  Identities=11%  Similarity=0.115  Sum_probs=28.7

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+|.| ||||.+|..+++.|-+++-.+.+++++.-.
T Consensus         4 ~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~   38 (322)
T PRK06901          4 LNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIE   38 (322)
T ss_pred             ceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccc
Confidence            47999 999999999999998887666677766543

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=86.97  E-value=1.4  Score=34.10  Aligned_cols=35  Identities=26%  Similarity=0.281  Sum_probs=28.9

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.+|+|.|++|.+|..++......|.   +|++..++.
T Consensus       147 ~~~vlI~g~~g~vg~~~~~~a~~~g~---~v~~~~~~~  181 (326)
T cd08289         147 QGPVLVTGATGGVGSLAVSILAKLGY---EVVASTGKA  181 (326)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC---eEEEEecCH
Confidence            56999999999999998877777765   688877764

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=86.91  E-value=1.8  Score=33.15  Aligned_cols=40  Identities=23%  Similarity=0.243  Sum_probs=33.2

Q ss_pred             hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ....+++.+|+|.|+ |-+|++++..|.+.|.  .++++++.+
T Consensus        22 ~q~~L~~~~V~ViG~-GglGs~ia~~La~~Gv--g~i~lvD~D   61 (212)
T PRK08644         22 LLEKLKKAKVGIAGA-GGLGSNIAVALARSGV--GNLKLVDFD   61 (212)
T ss_pred             HHHHHhCCCEEEECc-CHHHHHHHHHHHHcCC--CeEEEEeCC
Confidence            456778899999997 5589999999999876  488888876

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=86.87  E-value=1.2  Score=33.00  Aligned_cols=36  Identities=19%  Similarity=0.234  Sum_probs=29.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ..+.+|+|+|++| +|..++..+...+.   +|+++.++.
T Consensus       133 ~~~~~vli~g~~~-~G~~~~~~a~~~g~---~v~~~~~~~  168 (271)
T cd05188         133 KPGDTVLVLGAGG-VGLLAAQLAKAAGA---RVIVTDRSD  168 (271)
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHcCC---eEEEEcCCH
Confidence            3578999999999 99999887777764   788888764

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=86.77  E-value=0.86  Score=37.54  Aligned_cols=37  Identities=24%  Similarity=0.310  Sum_probs=30.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++..+|.|+||+|.||+.+++.|....-   ++..+.|+.
T Consensus       165 lsqatvaivGa~G~Ia~~Iar~la~~~~---~~~ll~r~a  201 (351)
T COG5322         165 LSQATVAIVGATGDIASAIARWLAPKVG---VKELLLRDA  201 (351)
T ss_pred             HHHCeEEEecCCchHHHHHHHHhccccC---EEEEecccH
Confidence            3457999999999999999999888743   677777763

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=86.76  E-value=1.6  Score=35.11  Aligned_cols=39  Identities=23%  Similarity=0.326  Sum_probs=32.2

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +.+++|+|.|+ |-+|..++..|...+.  .+|++..|+..+
T Consensus       176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~--~~V~v~~r~~~r  214 (311)
T cd05213         176 LKGKKVLVIGA-GEMGELAAKHLAAKGV--AEITIANRTYER  214 (311)
T ss_pred             ccCCEEEEECc-HHHHHHHHHHHHHcCC--CEEEEEeCCHHH
Confidence            46899999988 9999999999988654  389999997543

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>KOG2733|consensus

Probab=86.72  E-value=0.62  Score=39.53  Aligned_cols=37  Identities=27%  Similarity=0.427  Sum_probs=28.6

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhC--CCccEEEEEecCCCC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAI--PHLKHIYLLVRPKKG  104 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~--~~~~~V~~l~R~~~~  104 (121)
                      -++|.||+||.|..+++.+.+..  ++ ..+.+-.|++.+
T Consensus         7 DvVIyGASGfTG~yivee~v~~~~~~~-~slavAGRn~~K   45 (423)
T KOG2733|consen    7 DVVIYGASGFTGKYIVEEAVSSQVFEG-LSLAVAGRNEKK   45 (423)
T ss_pred             eEEEEccccccceeeHHHHhhhhcccC-ceEEEecCCHHH
Confidence            47899999999999999999932  11 267778887544

>PTZ00117 malate dehydrogenase; Provisional

Probab=86.59  E-value=2.2  Score=34.51  Aligned_cols=39  Identities=15%  Similarity=0.170  Sum_probs=31.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.++|.|.|| |.+|+.+...++..+-  ..|++++++...
T Consensus         3 ~~~~KI~IIGa-G~vG~~ia~~l~~~~~--~~l~L~Di~~~~   41 (319)
T PTZ00117          3 VKRKKISMIGA-GQIGSTVALLILQKNL--GDVVLYDVIKGV   41 (319)
T ss_pred             CCCcEEEEECC-CHHHHHHHHHHHHCCC--CeEEEEECCCcc
Confidence            46789999997 9999999998888763  379999987654

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=86.56  E-value=1.9  Score=32.57  Aligned_cols=40  Identities=18%  Similarity=0.080  Sum_probs=33.0

Q ss_pred             hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      -.+.+++++|+|.|++ -+|++++..|.+.|.  .++++++++
T Consensus        15 ~q~kl~~~~VlviG~G-glGs~ia~~La~~Gv--~~i~lvD~d   54 (202)
T TIGR02356        15 GQQRLLNSHVLIIGAG-GLGSPAALYLAGAGV--GTIVIVDDD   54 (202)
T ss_pred             HHHHhcCCCEEEECCC-HHHHHHHHHHHHcCC--CeEEEecCC
Confidence            3467888999999855 579999999999976  489988876

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>KOG1200|consensus

Probab=86.55  E-value=1.7  Score=34.35  Aligned_cols=44  Identities=14%  Similarity=0.180  Sum_probs=36.7

Q ss_pred             chhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          58 PIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        58 ~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +..+.+..+..+||||+.=||+.++..|.+.|.   +|.+..++...
T Consensus         7 ~~~~r~~sk~~~vtGg~sGIGrAia~~la~~Ga---rv~v~dl~~~~   50 (256)
T KOG1200|consen    7 EVVQRLMSKVAAVTGGSSGIGRAIAQLLAKKGA---RVAVADLDSAA   50 (256)
T ss_pred             HHHHHHhcceeEEecCCchHHHHHHHHHHhcCc---EEEEeecchhh
Confidence            456677889999999999999999999999987   67777775443

>KOG1478|consensus

Probab=86.49  E-value=2.2  Score=35.04  Aligned_cols=40  Identities=18%  Similarity=0.221  Sum_probs=30.0

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCc--cEEEEEecCCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHL--KHIYLLVRPKKG  104 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~--~~V~~l~R~~~~  104 (121)
                      .|.++|||++.-+|-.||..|++.....  -.+++..|+.++
T Consensus         3 RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~k   44 (341)
T KOG1478|consen    3 RKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSK   44 (341)
T ss_pred             ceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhH
Confidence            4678999999999999999999974331  245555676554

>cd08293 PTGR2 Prostaglandin reductase

Probab=86.46  E-value=1.2  Score=34.92  Aligned_cols=35  Identities=11%  Similarity=0.069  Sum_probs=27.8

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+|+|+||+|-+|...+......|.  .+|++.+++.
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~--~~Vi~~~~s~  190 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGC--SRVVGICGSD  190 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCC--CEEEEEcCCH
Confidence            7999999999999998876666654  2688887764

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=86.43  E-value=1.9  Score=30.18  Aligned_cols=32  Identities=25%  Similarity=0.233  Sum_probs=26.6

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +|+|.|+ |-+|+++++.|++.|.  .++.+++.+
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv--~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGV--GKITLIDFD   32 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--CEEEEEcCC
Confidence            4788887 7799999999999976  488888764

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=86.21  E-value=1.1  Score=30.16  Aligned_cols=35  Identities=23%  Similarity=0.337  Sum_probs=28.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +++++|+|.|+ |-+|..=++.|++.+.   +|+++...
T Consensus         5 l~~~~vlVvGg-G~va~~k~~~Ll~~gA---~v~vis~~   39 (103)
T PF13241_consen    5 LKGKRVLVVGG-GPVAARKARLLLEAGA---KVTVISPE   39 (103)
T ss_dssp             -TT-EEEEEEE-SHHHHHHHHHHCCCTB---EEEEEESS
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEECCc
Confidence            57899999998 8899999999999976   78887776

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=86.10  E-value=1.4  Score=39.77  Aligned_cols=38  Identities=18%  Similarity=0.225  Sum_probs=31.9

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +.+++.+|+|.|++| +|+++++.|++.|-  .+|++++.+
T Consensus       334 ekL~~~kVLIvGaGG-LGs~VA~~La~~GV--g~ItlVD~D  371 (664)
T TIGR01381       334 ERYSQLKVLLLGAGT-LGCNVARCLIGWGV--RHITFVDNG  371 (664)
T ss_pred             HHHhcCeEEEECCcH-HHHHHHHHHHHcCC--CeEEEEcCC
Confidence            557789999999887 69999999999976  488888753

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK05442 malate dehydrogenase; Provisional

Probab=85.75  E-value=1.8  Score=35.41  Aligned_cols=37  Identities=30%  Similarity=0.325  Sum_probs=29.8

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCcc-----EEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLK-----HIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~-----~V~~l~R~~  102 (121)
                      -++|.|+||+|.+|+.++..|+..+- +.     +++++++.+
T Consensus         4 ~~KV~IiGaaG~VG~~~a~~l~~~~~-~~~~~~~el~LiDi~~   45 (326)
T PRK05442          4 PVRVAVTGAAGQIGYSLLFRIASGDM-LGKDQPVILQLLEIPP   45 (326)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhhhh-cCCCCccEEEEEecCC
Confidence            35899999999999999998887543 24     788888853

>KOG2013|consensus

Probab=85.75  E-value=1.4  Score=38.77  Aligned_cols=38  Identities=21%  Similarity=0.313  Sum_probs=30.6

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      .+..++.+|||.||+| ||++|++.|+..|-.  .|.++.-
T Consensus         7 ~eai~~~riLvVGaGG-IGCELLKnLal~gf~--~IhiIDl   44 (603)
T KOG2013|consen    7 HEAIKSGRILVVGAGG-IGCELLKNLALTGFE--EIHIIDL   44 (603)
T ss_pred             HHHhccCeEEEEecCc-ccHHHHHHHHHhcCC--eeEEEec
Confidence            3455788999999988 899999999998764  6776663

>PRK13243 glyoxylate reductase; Reviewed

Probab=85.74  E-value=1.9  Score=35.13  Aligned_cols=38  Identities=16%  Similarity=0.141  Sum_probs=32.8

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+.|++|.|.|. |.||+.+++.+...|.   +|++..|...
T Consensus       147 ~L~gktvgIiG~-G~IG~~vA~~l~~~G~---~V~~~d~~~~  184 (333)
T PRK13243        147 DVYGKTIGIIGF-GRIGQAVARRAKGFGM---RILYYSRTRK  184 (333)
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCC---EEEEECCCCC
Confidence            468899999988 9999999999999987   7888888653

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=85.72  E-value=1.7  Score=36.18  Aligned_cols=40  Identities=30%  Similarity=0.314  Sum_probs=33.2

Q ss_pred             hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      -...+++.+|+|.|++| +|++++..|++.|.  .++++++.+
T Consensus        35 ~q~~l~~~~VliiG~Gg-lG~~v~~~La~~Gv--g~i~ivD~D   74 (370)
T PRK05600         35 QQERLHNARVLVIGAGG-LGCPAMQSLASAGV--GTITLIDDD   74 (370)
T ss_pred             HHHHhcCCcEEEECCCH-HHHHHHHHHHHcCC--CEEEEEeCC
Confidence            34667889999998876 79999999999876  488888875

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=85.72  E-value=2.8  Score=27.11  Aligned_cols=36  Identities=22%  Similarity=0.346  Sum_probs=26.7

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEE-ecCCC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLL-VRPKK  103 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l-~R~~~  103 (121)
                      +|.+. |+|-+|+.+++.|++.+....+|+.. .|++.
T Consensus         1 kI~iI-G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~   37 (96)
T PF03807_consen    1 KIGII-GAGNMGSALARGLLASGIKPHEVIIVSSRSPE   37 (96)
T ss_dssp             EEEEE-STSHHHHHHHHHHHHTTS-GGEEEEEEESSHH
T ss_pred             CEEEE-CCCHHHHHHHHHHHHCCCCceeEEeeccCcHH
Confidence            45566 88999999999999998322378855 77654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=85.71  E-value=1.6  Score=35.63  Aligned_cols=36  Identities=33%  Similarity=0.405  Sum_probs=28.2

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCcc-----EEEEEecCCC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLK-----HIYLLVRPKK  103 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~-----~V~~l~R~~~  103 (121)
                      +|.|+||+|.+|+.++..|+..+- +.     +++++++.+.
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~-~~~~~e~el~LiD~~~~   41 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRM-LGKDQPIILHLLDIPPA   41 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccc-cCCCCccEEEEEecCCc
Confidence            589999999999999999887543 11     5888888543

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=85.49  E-value=1.6  Score=36.41  Aligned_cols=39  Identities=23%  Similarity=0.238  Sum_probs=32.4

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ...+++.+|+|.|++| +|++++..|++.|.  .++.+++.+
T Consensus        37 q~~L~~~~VlviG~GG-lGs~va~~La~~Gv--g~i~lvD~D   75 (392)
T PRK07878         37 QKRLKNARVLVIGAGG-LGSPTLLYLAAAGV--GTLGIVEFD   75 (392)
T ss_pred             HHHHhcCCEEEECCCH-HHHHHHHHHHHcCC--CeEEEECCC
Confidence            4567889999999877 79999999999876  488887764

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=85.45  E-value=1.9  Score=35.21  Aligned_cols=37  Identities=19%  Similarity=0.277  Sum_probs=32.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.||+|.+.|.+|.+|..+...|++.+.   .|++..|..
T Consensus       157 l~Gk~V~vIG~s~ivG~PmA~~L~~~ga---tVtv~~~~t  193 (301)
T PRK14194        157 LTGKHAVVIGRSNIVGKPMAALLLQAHC---SVTVVHSRS  193 (301)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCC---EEEEECCCC
Confidence            5799999999999999999999999987   688886654

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=85.42  E-value=1.9  Score=36.16  Aligned_cols=39  Identities=23%  Similarity=0.411  Sum_probs=32.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +.+++|+|.|+ |-+|..++..|...|.  .+|++..|+..+
T Consensus       178 l~~~~VlViGa-G~iG~~~a~~L~~~G~--~~V~v~~rs~~r  216 (417)
T TIGR01035       178 LKGKKALLIGA-GEMGELVAKHLLRKGV--GKILIANRTYER  216 (417)
T ss_pred             ccCCEEEEECC-hHHHHHHHHHHHHCCC--CEEEEEeCCHHH
Confidence            56799999997 9999999999998764  389999997543

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=85.28  E-value=2  Score=33.39  Aligned_cols=37  Identities=19%  Similarity=0.134  Sum_probs=29.7

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCC-CccEEEEEecCCCC
Q psy3445          68 VFVTGGTGFMGKILVEKLLRAIP-HLKHIYLLVRPKKG  104 (121)
Q Consensus        68 VlVTGatGfIGs~ll~~Ll~~~~-~~~~V~~l~R~~~~  104 (121)
                      |.|.||+|.+|..++..|+..+. ...+|+++++++..
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~   38 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEK   38 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCccc
Confidence            57899999999999999998861 22489999987654

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=85.16  E-value=2.9  Score=32.63  Aligned_cols=32  Identities=22%  Similarity=0.253  Sum_probs=25.4

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+...||+|.+|+.+.+.|.+.++   +|+.-.|.
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~---eV~igs~r   33 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGH---EVIIGSSR   33 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCC---eEEEecCC
Confidence            455669999999999999999987   56655443

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=84.99  E-value=2.3  Score=32.24  Aligned_cols=36  Identities=17%  Similarity=0.158  Sum_probs=30.2

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++.+++|+|++|.+|..++..+...|.   +++++.++.
T Consensus       144 ~~~~vli~g~~~~~g~~~~~~~~~~g~---~v~~~~~~~  179 (328)
T cd08268         144 PGDSVLITAASSSVGLAAIQIANAAGA---TVIATTRTS  179 (328)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCC---EEEEEcCCH
Confidence            567999999999999999998888875   677777653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=84.96  E-value=2.2  Score=32.99  Aligned_cols=38  Identities=18%  Similarity=0.315  Sum_probs=31.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +++++|+|.|| |-.|..++.+|...|...++|+++.|+
T Consensus        23 l~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          23 IEEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            57789999999 778999999999875411289999998

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=84.94  E-value=1.9  Score=33.79  Aligned_cols=35  Identities=17%  Similarity=0.145  Sum_probs=29.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++|.|.|+ |.+|..++..+++.++   +|+++.+++..
T Consensus         4 ~kI~VIG~-G~mG~~ia~~la~~g~---~V~~~d~~~~~   38 (282)
T PRK05808          4 QKIGVIGA-GTMGNGIAQVCAVAGY---DVVMVDISDAA   38 (282)
T ss_pred             cEEEEEcc-CHHHHHHHHHHHHCCC---ceEEEeCCHHH
Confidence            46888877 9999999999999987   68888887544

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=84.83  E-value=2.5  Score=32.34  Aligned_cols=39  Identities=31%  Similarity=0.337  Sum_probs=31.3

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+.+++++|+|.|++| +|++++..|++.|.  .++++++.+
T Consensus        16 q~~L~~~~VlivG~Gg-lGs~va~~La~~Gv--g~i~lvD~D   54 (228)
T cd00757          16 QEKLKNARVLVVGAGG-LGSPAAEYLAAAGV--GKLGLVDDD   54 (228)
T ss_pred             HHHHhCCcEEEECCCH-HHHHHHHHHHHcCC--CEEEEEcCC
Confidence            4567889999998654 89999999999976  478777643

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK07411 hypothetical protein; Validated

Probab=84.70  E-value=1.9  Score=35.99  Aligned_cols=39  Identities=28%  Similarity=0.242  Sum_probs=32.7

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ...+++.+|+|.|++| +|++++..|++.|-  .++.+++.+
T Consensus        33 q~~L~~~~VlivG~GG-lG~~va~~La~~Gv--g~l~lvD~D   71 (390)
T PRK07411         33 QKRLKAASVLCIGTGG-LGSPLLLYLAAAGI--GRIGIVDFD   71 (390)
T ss_pred             HHHHhcCcEEEECCCH-HHHHHHHHHHHcCC--CEEEEECCC
Confidence            4568889999999887 69999999999976  488888764

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=84.69  E-value=4.2  Score=32.94  Aligned_cols=38  Identities=18%  Similarity=0.121  Sum_probs=30.6

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .++|.|+|+ |.+|+.++..|+..+- +.++++++++...
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~-~~el~LiD~~~~~   40 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGL-ADELVLVDVVEDK   40 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCccH
Confidence            358999996 9999999998887743 4689999987643

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06223 malate dehydrogenase; Reviewed

Probab=84.62  E-value=3.9  Score=32.34  Aligned_cols=36  Identities=17%  Similarity=0.137  Sum_probs=29.9

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++|.|.|| |++|+.++..++..+..  +|+++++++..
T Consensus         3 ~KI~VIGa-G~vG~~ia~~la~~~~~--ev~L~D~~~~~   38 (307)
T PRK06223          3 KKISIIGA-GNVGATLAHLLALKELG--DVVLFDIVEGV   38 (307)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCe--EEEEEECCCch
Confidence            68999999 99999999998887542  79999986554

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=84.61  E-value=2  Score=34.20  Aligned_cols=38  Identities=21%  Similarity=0.261  Sum_probs=29.1

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.+|+|+|+ |-+|...+..+...|.  .+|++..+++.+
T Consensus       169 ~g~~VlV~G~-G~vG~~aiqlak~~G~--~~Vi~~~~~~~~  206 (343)
T PRK09880        169 QGKRVFVSGV-GPIGCLIVAAVKTLGA--AEIVCADVSPRS  206 (343)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCC--cEEEEEeCCHHH
Confidence            5789999986 8999998876666654  378888886543

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=84.45  E-value=3.3  Score=35.58  Aligned_cols=43  Identities=23%  Similarity=0.218  Sum_probs=32.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHh---C---CCccEEEEEecCCCCc
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRA---I---PHLKHIYLLVRPKKGK  105 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~---~---~~~~~V~~l~R~~~~~  105 (121)
                      -+--+|.|+||+|.+|++++..|+..   +   +-+.+++.+.++....
T Consensus        98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a  146 (444)
T PLN00112         98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQAL  146 (444)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchh
Confidence            34468999999999999999998876   1   1124788888876653

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=84.31  E-value=2.3  Score=34.94  Aligned_cols=37  Identities=24%  Similarity=0.182  Sum_probs=29.7

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++|.|+|| |.+|+.++..|+..+.. .+++++.+....
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~-~el~LiDi~~~~   37 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLG-SELVLIDINEEK   37 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhccccc-ceEEEEEccccc
Confidence            57999999 99999999999776542 389999987433

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=84.12  E-value=2.5  Score=35.79  Aligned_cols=39  Identities=23%  Similarity=0.432  Sum_probs=32.6

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +.+++|+|.|+ |-.|..++..|...|..  +|++..|+..+
T Consensus       179 l~~kkvlviGa-G~~a~~va~~L~~~g~~--~I~V~nRt~~r  217 (414)
T PRK13940        179 ISSKNVLIIGA-GQTGELLFRHVTALAPK--QIMLANRTIEK  217 (414)
T ss_pred             ccCCEEEEEcC-cHHHHHHHHHHHHcCCC--EEEEECCCHHH
Confidence            57899999999 66789999999988764  89999998543

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=84.11  E-value=2.4  Score=33.42  Aligned_cols=35  Identities=26%  Similarity=0.242  Sum_probs=29.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++|.|.|+ |.+|..++..|+..|.   +|++..++...
T Consensus         5 ~~V~vIG~-G~mG~~iA~~l~~~G~---~V~~~d~~~~~   39 (295)
T PLN02545          5 KKVGVVGA-GQMGSGIAQLAAAAGM---DVWLLDSDPAA   39 (295)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCC---eEEEEeCCHHH
Confidence            57888865 9999999999999986   79999987544

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=84.07  E-value=2.5  Score=34.39  Aligned_cols=37  Identities=22%  Similarity=0.377  Sum_probs=32.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEE-ecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLL-VRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l-~R~~  102 (121)
                      +.|++|+|.|.+|.+|..++..|++.+.   .|++. .|..
T Consensus       156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g~---tVtv~~~rT~  193 (296)
T PRK14188        156 LSGLNAVVIGRSNLVGKPMAQLLLAANA---TVTIAHSRTR  193 (296)
T ss_pred             CCCCEEEEEcCCcchHHHHHHHHHhCCC---EEEEECCCCC
Confidence            5799999999999999999999999886   67777 3553

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=84.06  E-value=2.4  Score=35.56  Aligned_cols=39  Identities=23%  Similarity=0.355  Sum_probs=32.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +.+++|+|.|+ |-+|..++..|...|.  .+|++..|+..+
T Consensus       180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~--~~V~v~~r~~~r  218 (423)
T PRK00045        180 LSGKKVLVIGA-GEMGELVAKHLAEKGV--RKITVANRTLER  218 (423)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHHCCC--CeEEEEeCCHHH
Confidence            57899999987 9999999999988765  379999997543

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=83.99  E-value=2.2  Score=33.13  Aligned_cols=37  Identities=22%  Similarity=0.141  Sum_probs=29.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ..+.+|+|.||+|.+|..++......|.   +|++..++.
T Consensus       138 ~~~~~vlI~ga~g~ig~~~~~~a~~~g~---~v~~~~~~~  174 (329)
T cd08250         138 KSGETVLVTAAAGGTGQFAVQLAKLAGC---HVIGTCSSD  174 (329)
T ss_pred             CCCCEEEEEeCccHHHHHHHHHHHHcCC---eEEEEeCcH
Confidence            3578999999999999988777777665   677777754

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=83.98  E-value=2.9  Score=31.61  Aligned_cols=36  Identities=11%  Similarity=0.225  Sum_probs=29.7

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+++|+|++|-+|..++......|.   +|++..++.
T Consensus       139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~---~v~~~~~~~  174 (325)
T TIGR02824       139 AGETVLIHGGASGIGTTAIQLAKAFGA---RVFTTAGSD  174 (325)
T ss_pred             CCCEEEEEcCcchHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            478999999999999998888777775   677777753

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>PLN00203 glutamyl-tRNA reductase

Probab=83.89  E-value=2.2  Score=37.25  Aligned_cols=39  Identities=31%  Similarity=0.465  Sum_probs=32.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +.+++|+|.|+ |-+|..+++.|...|.  .+|++..|+..+
T Consensus       264 l~~kkVlVIGA-G~mG~~~a~~L~~~G~--~~V~V~nRs~er  302 (519)
T PLN00203        264 HASARVLVIGA-GKMGKLLVKHLVSKGC--TKMVVVNRSEER  302 (519)
T ss_pred             CCCCEEEEEeC-HHHHHHHHHHHHhCCC--CeEEEEeCCHHH
Confidence            45799999999 9999999999998875  479999997544

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=83.83  E-value=1.9  Score=33.74  Aligned_cols=32  Identities=19%  Similarity=0.130  Sum_probs=25.9

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +|+|.|++ -+|+++++.|+..|.  .++.+++.+
T Consensus         1 kVlvvG~G-GlG~eilk~La~~Gv--g~i~ivD~D   32 (234)
T cd01484           1 KVLLVGAG-GIGCELLKNLALMGF--GQIHVIDMD   32 (234)
T ss_pred             CEEEECCC-HHHHHHHHHHHHcCC--CeEEEEeCC
Confidence            47888855 489999999999876  488888875

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=83.72  E-value=3  Score=33.16  Aligned_cols=39  Identities=18%  Similarity=0.144  Sum_probs=31.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++++++|.|++| .|+.++.+|...|.  .+|+++.|+..+
T Consensus       123 ~~~k~vlvlGaGG-aarai~~aL~~~G~--~~i~I~nRt~~k  161 (282)
T TIGR01809       123 LAGFRGLVIGAGG-TSRAAVYALASLGV--TDITVINRNPDK  161 (282)
T ss_pred             cCCceEEEEcCcH-HHHHHHHHHHHcCC--CeEEEEeCCHHH
Confidence            3578999998865 57999999998875  489999998543

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=83.64  E-value=2.7  Score=33.81  Aligned_cols=36  Identities=17%  Similarity=0.154  Sum_probs=28.2

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+|+|+||+|-+|...+......|.   +|++..++.
T Consensus       158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~---~Vi~~~~~~  193 (348)
T PLN03154        158 KGDSVFVSAASGAVGQLVGQLAKLHGC---YVVGSAGSS  193 (348)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCC---EEEEEcCCH
Confidence            468999999999999998866666664   677776653

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=83.58  E-value=4.9  Score=32.26  Aligned_cols=37  Identities=27%  Similarity=0.268  Sum_probs=30.5

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      |+|.|.|+ |.+|+.++..|+..+. +.+|+++.|+...
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~-~~ev~l~D~~~~~   37 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGL-ASEIVLVDINKAK   37 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCC-CCEEEEEECCchh
Confidence            47899998 9999999999999874 2489999997654

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=83.49  E-value=3.1  Score=34.27  Aligned_cols=40  Identities=30%  Similarity=0.280  Sum_probs=33.0

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ...+++.+|+|.|++| +|++++..|++.|-  .++.+++.+.
T Consensus        23 q~~L~~~~VlivG~GG-lGs~~a~~La~~Gv--g~i~lvD~D~   62 (355)
T PRK05597         23 QQSLFDAKVAVIGAGG-LGSPALLYLAGAGV--GHITIIDDDT   62 (355)
T ss_pred             HHHHhCCeEEEECCCH-HHHHHHHHHHHcCC--CeEEEEeCCE
Confidence            4567889999999855 79999999999876  4888888753

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=83.31  E-value=4.1  Score=32.55  Aligned_cols=37  Identities=16%  Similarity=0.247  Sum_probs=30.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++|.|.|+ |.+|+.++..|+..+. ..+|+++.|+...
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~-~~ei~l~D~~~~~   37 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGI-ADELVLIDINEEK   37 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCcch
Confidence            47899996 8999999999998864 1379999997654

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>KOG2018|consensus

Probab=83.24  E-value=2.9  Score=35.19  Aligned_cols=38  Identities=26%  Similarity=0.354  Sum_probs=30.7

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ..+++..|+|.|++| +|+|++..|+++|-.  +|.+++-+
T Consensus        70 ~kl~~syVVVVG~Gg-VGSwv~nmL~RSG~q--Ki~iVDfd  107 (430)
T KOG2018|consen   70 EKLTNSYVVVVGAGG-VGSWVANMLLRSGVQ--KIRIVDFD  107 (430)
T ss_pred             HHhcCcEEEEEecCc-hhHHHHHHHHHhcCc--eEEEechh
Confidence            346788899999877 799999999999764  77777654

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=82.87  E-value=2.6  Score=33.16  Aligned_cols=35  Identities=17%  Similarity=0.180  Sum_probs=29.6

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++|.|.|+ |.+|..++..|++.++   +|++..|++..
T Consensus         2 ~~V~VIG~-G~mG~~iA~~la~~G~---~V~~~d~~~~~   36 (288)
T PRK09260          2 EKLVVVGA-GVMGRGIAYVFAVSGF---QTTLVDIKQEQ   36 (288)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhCCC---cEEEEeCCHHH
Confidence            46888888 9999999999999987   68899887544

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=82.76  E-value=2.8  Score=33.81  Aligned_cols=38  Identities=34%  Similarity=0.558  Sum_probs=31.9

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .++|.|.||+|-.|+.+++.+.+. ++..-+.++.|..+
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~-~~~~L~aa~~~~~~   39 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEA-PDLELVAAFDRPGS   39 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcC-CCceEEEEEecCCc
Confidence            368999999999999999999887 56667888888754

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=82.54  E-value=3.5  Score=31.54  Aligned_cols=37  Identities=11%  Similarity=0.043  Sum_probs=30.6

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ..+.+++|+|++|-+|..+++.+...+.   +|++..++.
T Consensus       165 ~~~~~vlI~g~~~~iG~~~~~~~~~~g~---~v~~~~~~~  201 (342)
T cd08266         165 RPGETVLVHGAGSGVGSAAIQIAKLFGA---TVIATAGSE  201 (342)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            3578999999999999999998888876   677777653

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=82.53  E-value=1.2  Score=37.37  Aligned_cols=35  Identities=26%  Similarity=0.359  Sum_probs=28.7

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ..++|-|||||.|.-++++|++.+.   +..+-.|+..
T Consensus         7 ~d~iiYGAtGy~G~lvae~l~~~g~---~~aLAgRs~~   41 (382)
T COG3268           7 YDIIIYGATGYAGGLVAEYLAREGL---TAALAGRSSA   41 (382)
T ss_pred             eeEEEEccccchhHHHHHHHHHcCC---chhhccCCHH
Confidence            4688999999999999999999987   3466667643

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=82.38  E-value=3  Score=33.15  Aligned_cols=35  Identities=26%  Similarity=0.235  Sum_probs=30.3

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++|.|.|+ |.+|..++..++..|+   .|++..+++..
T Consensus         6 ~~V~ViGa-G~mG~~iA~~~a~~G~---~V~l~d~~~~~   40 (286)
T PRK07819          6 QRVGVVGA-GQMGAGIAEVCARAGV---DVLVFETTEEL   40 (286)
T ss_pred             cEEEEEcc-cHHHHHHHHHHHhCCC---EEEEEECCHHH
Confidence            47888887 8999999999999987   79999998654

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=82.32  E-value=3.6  Score=32.92  Aligned_cols=39  Identities=15%  Similarity=0.135  Sum_probs=31.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .++++++|.||+| .|+.++..|+..+.  .+|+++.|+..+
T Consensus       125 ~~~k~vlilGaGG-aarAi~~aL~~~g~--~~i~i~nR~~~k  163 (283)
T PRK14027        125 AKLDSVVQVGAGG-VGNAVAYALVTHGV--QKLQVADLDTSR  163 (283)
T ss_pred             cCCCeEEEECCcH-HHHHHHHHHHHCCC--CEEEEEcCCHHH
Confidence            4468899999965 68999999998865  489999997543

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=82.31  E-value=3.3  Score=33.83  Aligned_cols=38  Identities=13%  Similarity=0.053  Sum_probs=32.1

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+.+++|.|.|. |.+|+.+++.+...|.   +|++..|+..
T Consensus       143 ~l~g~~VgIIG~-G~IG~~vA~~L~~~G~---~V~~~d~~~~  180 (330)
T PRK12480        143 PVKNMTVAIIGT-GRIGAATAKIYAGFGA---TITAYDAYPN  180 (330)
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEeCChh
Confidence            468899999865 8899999999999887   7888888753

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=82.29  E-value=3.1  Score=33.83  Aligned_cols=32  Identities=19%  Similarity=0.243  Sum_probs=27.0

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +|+|.|| |++|..++.+|.+.|.   +|.++.|..
T Consensus         3 ~vvIIGa-G~~G~~~A~~La~~g~---~V~vle~~~   34 (410)
T PRK12409          3 HIAVIGA-GITGVTTAYALAQRGY---QVTVFDRHR   34 (410)
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence            5777765 9999999999999876   799999864

>PLN02602 lactate dehydrogenase

Probab=82.20  E-value=5.6  Score=32.92  Aligned_cols=37  Identities=19%  Similarity=0.197  Sum_probs=30.7

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++|.|+|+ |.+|+.++..|+..+- +.+++++++....
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l-~~el~LiDi~~~~   74 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDL-ADELALVDVNPDK   74 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCCch
Confidence            69999996 9999999999888743 4589999987654

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=82.13  E-value=3.5  Score=32.53  Aligned_cols=35  Identities=31%  Similarity=0.420  Sum_probs=27.7

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ++|.|.|++|-+|+.+++++... +++.-+.+++|.
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~-~~~elvav~d~~   36 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAA-EGLQLVAAFERH   36 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecC
Confidence            47999999999999999999876 555455556654

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=81.97  E-value=3.6  Score=33.02  Aligned_cols=35  Identities=26%  Similarity=0.320  Sum_probs=26.7

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++|+|. |.|.+|..+.+.|.+.|+   .+.++.++...
T Consensus         4 ~~v~Iv-G~GliG~s~a~~l~~~g~---~v~i~g~d~~~   38 (279)
T COG0287           4 MKVGIV-GLGLMGGSLARALKEAGL---VVRIIGRDRSA   38 (279)
T ss_pred             cEEEEE-CCchHHHHHHHHHHHcCC---eEEEEeecCcH
Confidence            456664 599999999999999998   56666665544

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=81.91  E-value=3.2  Score=34.46  Aligned_cols=39  Identities=18%  Similarity=0.108  Sum_probs=34.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +.+++|+|.|+ |=+|.-.+++|.+.|.  .+|++..|....
T Consensus       172 l~~k~vLvIGa-Gem~~l~a~~L~~~g~--~~i~v~nRt~~~  210 (338)
T PRK00676        172 SKKASLLFIGY-SEINRKVAYYLQRQGY--SRITFCSRQQLT  210 (338)
T ss_pred             ccCCEEEEEcc-cHHHHHHHHHHHHcCC--CEEEEEcCCccc
Confidence            57899999999 9999999999999876  489999998643

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=81.90  E-value=3  Score=32.46  Aligned_cols=37  Identities=16%  Similarity=0.223  Sum_probs=30.5

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+.+|+|.|++|.+|..++......|.   +|+++.++..
T Consensus       162 ~~~~vlI~g~~g~~g~~~~~la~~~g~---~vi~~~~~~~  198 (334)
T PRK13771        162 KGETVLVTGAGGGVGIHAIQVAKALGA---KVIAVTSSES  198 (334)
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence            467999999999999999888777765   6888887643

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=81.81  E-value=3.1  Score=32.62  Aligned_cols=34  Identities=21%  Similarity=0.255  Sum_probs=28.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++|.|.| .|.+|..++..|.+.+.   +|++..|++.
T Consensus         1 m~I~IIG-~G~mG~sla~~L~~~g~---~V~~~d~~~~   34 (279)
T PRK07417          1 MKIGIVG-LGLIGGSLGLDLRSLGH---TVYGVSRRES   34 (279)
T ss_pred             CeEEEEe-ecHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            4688887 79999999999999876   7899888643

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=81.71  E-value=7.1  Score=28.22  Aligned_cols=36  Identities=25%  Similarity=0.299  Sum_probs=31.2

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ++|++|.|.|.+..+|..++..|.+.+.   .|+...+.
T Consensus        26 ~~gk~v~VvGrs~~vG~pla~lL~~~ga---tV~~~~~~   61 (140)
T cd05212          26 LDGKKVLVVGRSGIVGAPLQCLLQRDGA---TVYSCDWK   61 (140)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEeCCC
Confidence            5899999999999999999999999876   67766653

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=81.41  E-value=3.3  Score=33.46  Aligned_cols=39  Identities=21%  Similarity=0.290  Sum_probs=32.3

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ...+.+.+|+|.|++| +|+++++.|+..|.  ++|++.+.+
T Consensus        14 q~kL~~s~VLIvG~gG-LG~EiaKnLalaGV--g~itI~D~d   52 (286)
T cd01491          14 MKKLQKSNVLISGLGG-LGVEIAKNLILAGV--KSVTLHDTK   52 (286)
T ss_pred             HHHHhcCcEEEEcCCH-HHHHHHHHHHHcCC--CeEEEEcCC
Confidence            4567889999999887 69999999999976  488887754

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=81.37  E-value=3.2  Score=35.41  Aligned_cols=38  Identities=18%  Similarity=0.097  Sum_probs=32.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +.+++|+|.|. |.+|..++..+...|.   +|++..+++.+
T Consensus       210 l~Gk~VlViG~-G~IG~~vA~~lr~~Ga---~ViV~d~dp~r  247 (425)
T PRK05476        210 IAGKVVVVAGY-GDVGKGCAQRLRGLGA---RVIVTEVDPIC  247 (425)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEcCCchh
Confidence            47899999996 7899999999999886   68888887544

>PRK06444 prephenate dehydrogenase; Provisional

Probab=81.36  E-value=2.9  Score=31.94  Aligned_cols=26  Identities=19%  Similarity=0.225  Sum_probs=23.8

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPH   91 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~   91 (121)
                      +++.|.||+|-+|+++++.+.+.|+.
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~   26 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLG   26 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCE
Confidence            47999999999999999999998874

>PLN02256 arogenate dehydrogenase

Probab=81.33  E-value=3.6  Score=33.26  Aligned_cols=37  Identities=16%  Similarity=0.259  Sum_probs=30.8

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ..+.++|.|.| .|.+|+.++..|.+.+.   +|++..|+.
T Consensus        33 ~~~~~kI~IIG-~G~mG~slA~~L~~~G~---~V~~~d~~~   69 (304)
T PLN02256         33 KSRKLKIGIVG-FGNFGQFLAKTFVKQGH---TVLATSRSD   69 (304)
T ss_pred             cCCCCEEEEEe-eCHHHHHHHHHHHhCCC---EEEEEECcc
Confidence            34668999999 69999999999998764   788888874

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=81.22  E-value=4.1  Score=31.48  Aligned_cols=36  Identities=11%  Similarity=0.137  Sum_probs=29.4

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+|+|.|++|.+|..++..+.+.|.   +|+++.++.
T Consensus       145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~---~vi~~~~~~  180 (329)
T cd05288         145 PGETVVVSAAAGAVGSVVGQIAKLLGA---RVVGIAGSD  180 (329)
T ss_pred             CCCEEEEecCcchHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            468999999999999999888777765   677777653

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=81.14  E-value=3.6  Score=33.36  Aligned_cols=33  Identities=24%  Similarity=0.255  Sum_probs=27.2

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+|+|.|| |++|..++.+|.+.+.   +|.++.|..
T Consensus         1 ~~v~IVG~-Gi~Gls~A~~l~~~g~---~V~vle~~~   33 (416)
T PRK00711          1 MRVVVLGS-GVIGVTSAWYLAQAGH---EVTVIDRQP   33 (416)
T ss_pred             CEEEEECC-cHHHHHHHHHHHHCCC---EEEEEeCCC
Confidence            35777765 9999999999999876   799999863

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=81.11  E-value=6  Score=33.20  Aligned_cols=36  Identities=19%  Similarity=0.248  Sum_probs=29.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++|+|.|+ |.+|..+++.|.+.|.   +|+++.+..
T Consensus        14 ~~~~~v~viG~-G~~G~~~A~~L~~~G~---~V~~~d~~~   49 (480)
T PRK01438         14 WQGLRVVVAGL-GVSGFAAADALLELGA---RVTVVDDGD   49 (480)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            56789999997 7799999999998886   688887653

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=81.10  E-value=3.3  Score=31.61  Aligned_cols=36  Identities=28%  Similarity=0.339  Sum_probs=30.5

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+|+|+|++|.+|..++......|.   +|++..++.
T Consensus       132 ~~~~vli~g~~~~~g~~~~~~a~~~g~---~v~~~~~~~  167 (305)
T cd08270         132 LGRRVLVTGASGGVGRFAVQLAALAGA---HVVAVVGSP  167 (305)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            478999999999999999888888775   688887754

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=81.09  E-value=3.5  Score=31.69  Aligned_cols=35  Identities=34%  Similarity=0.393  Sum_probs=28.0

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.+|+|.|++|.+|..++......|.   +|++..++.
T Consensus       147 ~~~vlI~g~~g~vg~~~~~~a~~~g~---~v~~~~~~~  181 (325)
T cd05280         147 DGPVLVTGATGGVGSIAVAILAKLGY---TVVALTGKE  181 (325)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            45899999999999999876666665   588887764

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=81.04  E-value=2.9  Score=33.26  Aligned_cols=35  Identities=17%  Similarity=0.172  Sum_probs=27.9

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+|+|.|+ |.+|...+..+...+.   +|+++.+++
T Consensus       166 ~g~~VlV~G~-G~vG~~a~~~a~~~G~---~vi~~~~~~  200 (349)
T TIGR03201       166 KGDLVIVIGA-GGVGGYMVQTAKAMGA---AVVAIDIDP  200 (349)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCC---eEEEEcCCH
Confidence            4789999999 9999998877777664   678777754

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PTZ00245 ubiquitin activating enzyme; Provisional

Probab=81.01  E-value=3.6  Score=33.52  Aligned_cols=40  Identities=18%  Similarity=0.110  Sum_probs=32.6

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ...+++.+|+|.|++| +|+.++..|...|-  .++++.+.+.
T Consensus        21 Q~KL~~SrVLVVG~GG-LGsEVAKnLaLAGV--GsItIvDdD~   60 (287)
T PTZ00245         21 QQQLMHTSVALHGVAG-AAAEAAKNLVLAGV--RAVAVADEGL   60 (287)
T ss_pred             HHHHhhCeEEEECCCc-hHHHHHHHHHHcCC--CeEEEecCCc
Confidence            3457788999999988 89999999999876  4888877643

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=80.99  E-value=3.1  Score=33.71  Aligned_cols=35  Identities=14%  Similarity=0.195  Sum_probs=26.7

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +.+|+|+||+|-+|+..+.-....|..  .|....++
T Consensus       143 g~~VLV~gaaGgVG~~aiQlAk~~G~~--~v~~~~s~  177 (326)
T COG0604         143 GETVLVHGAAGGVGSAAIQLAKALGAT--VVAVVSSS  177 (326)
T ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCc--EEEEecCH
Confidence            789999999999999999777777642  44444443

>KOG0023|consensus

Probab=80.94  E-value=4.3  Score=34.02  Aligned_cols=36  Identities=17%  Similarity=0.152  Sum_probs=31.7

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .|+.+.|+|++| +|+--+..-.+.|.   +|+++.++..
T Consensus       181 pG~~vgI~GlGG-LGh~aVq~AKAMG~---rV~vis~~~~  216 (360)
T KOG0023|consen  181 PGKWVGIVGLGG-LGHMAVQYAKAMGM---RVTVISTSSK  216 (360)
T ss_pred             CCcEEEEecCcc-cchHHHHHHHHhCc---EEEEEeCCch
Confidence            689999999999 99988888888887   8999999863

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=80.88  E-value=6  Score=32.02  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=29.3

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +|.|.|+ |.+|+.++..|+..+ -+.+++++++....
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~-~~~elvL~Di~~~~   36 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALG-LFSEIVLIDVNEGV   36 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeCCcch
Confidence            5788898 999999999998864 34689999986554

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=80.80  E-value=4.2  Score=32.60  Aligned_cols=37  Identities=22%  Similarity=0.220  Sum_probs=31.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +.+++++|.|+ |-+|..++..|...|.   +|++..|+..
T Consensus       150 l~g~kvlViG~-G~iG~~~a~~L~~~Ga---~V~v~~r~~~  186 (296)
T PRK08306        150 IHGSNVLVLGF-GRTGMTLARTLKALGA---NVTVGARKSA  186 (296)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            35799999997 6699999999999875   7999999743

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=80.71  E-value=5.8  Score=25.00  Aligned_cols=30  Identities=30%  Similarity=0.373  Sum_probs=25.1

Q ss_pred             cCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          72 GGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        72 GatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      =|+|++|.+++..|.+.+.   +|+++.|.+.-
T Consensus         5 iGgG~ig~E~A~~l~~~g~---~vtli~~~~~~   34 (80)
T PF00070_consen    5 IGGGFIGIELAEALAELGK---EVTLIERSDRL   34 (80)
T ss_dssp             ESSSHHHHHHHHHHHHTTS---EEEEEESSSSS
T ss_pred             ECcCHHHHHHHHHHHHhCc---EEEEEeccchh
Confidence            3679999999999999875   79999986443

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=80.62  E-value=4.6  Score=30.98  Aligned_cols=36  Identities=22%  Similarity=0.176  Sum_probs=29.5

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+|+|+|++|.+|..++..+...|.   +|+++.++.
T Consensus       142 ~~~~vlI~g~~~~~g~~~~~la~~~g~---~v~~~~~~~  177 (324)
T cd08244         142 PGDVVLVTAAAGGLGSLLVQLAKAAGA---TVVGAAGGP  177 (324)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            467899999999999999887777765   688877653

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=80.47  E-value=3.6  Score=32.37  Aligned_cols=35  Identities=14%  Similarity=0.140  Sum_probs=29.3

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++|.|.|+ |.+|+.++..++..|+   +|++..++...
T Consensus         4 ~kIaViGa-G~mG~~iA~~la~~G~---~V~l~d~~~~~   38 (287)
T PRK08293          4 KNVTVAGA-GVLGSQIAFQTAFHGF---DVTIYDISDEA   38 (287)
T ss_pred             cEEEEECC-CHHHHHHHHHHHhcCC---eEEEEeCCHHH
Confidence            57888875 9999999999998877   79999987543

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=80.35  E-value=2.9  Score=33.92  Aligned_cols=32  Identities=22%  Similarity=0.321  Sum_probs=25.7

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +|+|.|++| +|+++++.|+..|-  .++.+++.+
T Consensus         1 kVlVVGaGG-lG~eilknLal~Gv--g~I~IvD~D   32 (291)
T cd01488           1 KILVIGAGG-LGCELLKNLALSGF--RNIHVIDMD   32 (291)
T ss_pred             CEEEECCCH-HHHHHHHHHHHcCC--CeEEEECCC
Confidence            478888665 79999999999875  488887753

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=80.17  E-value=4.9  Score=30.56  Aligned_cols=36  Identities=14%  Similarity=0.178  Sum_probs=29.5

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+|+|.|++|.+|..++......|.   +|+++.++.
T Consensus       142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~---~v~~~~~~~  177 (320)
T cd08243         142 PGDTLLIRGGTSSVGLAALKLAKALGA---TVTATTRSP  177 (320)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            467999999999999999887777765   577777654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=80.10  E-value=4.1  Score=32.04  Aligned_cols=35  Identities=17%  Similarity=0.216  Sum_probs=29.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++|.|.|+ |.+|..++..++..|+   +|++..+++..
T Consensus         4 ~~I~ViGa-G~mG~~iA~~la~~G~---~V~l~d~~~~~   38 (291)
T PRK06035          4 KVIGVVGS-GVMGQGIAQVFARTGY---DVTIVDVSEEI   38 (291)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhcCC---eEEEEeCCHHH
Confidence            57888876 9999999999999987   69999987544

>smart00829 PKS_ER Enoylreductase

Probab=80.03  E-value=3.8  Score=30.24  Aligned_cols=37  Identities=11%  Similarity=0.157  Sum_probs=29.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ..+.+|+|.|++|.+|..++......+.   +|++..++.
T Consensus       103 ~~g~~vlv~g~~~~~g~~~~~~a~~~g~---~v~~~~~~~  139 (288)
T smart00829      103 RPGESVLIHAAAGGVGQAAIQLAQHLGA---EVFATAGSP  139 (288)
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            3578999999999999998876666654   677777654

Enoylreductase in Polyketide synthases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	121
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	1e-15
1xq6_A	253	Unknown protein; structural genomics, protein stru	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	3e-04
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	3e-04
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	4e-04
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	5e-04
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	7e-04

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478

 Score = 70.7 bits (173), Expect = 1e-15
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 64  RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDR 118
              +V +TG TGF+G+ LV +LLR +     +  LVR +  +  + RLE  F+  
Sbjct: 72  ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSG 126

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 67  SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR-PKKGKAVQERLEAIFED 117
           +V VTG +G  G+I+ +KL            LVR  +  + +    +    D
Sbjct: 6   TVLVTGASGRTGQIVYKKLKEG-SDKFVAKGLVRSAQGKEKIGGEADVFIGD 56

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 13/113 (11%), Positives = 34/113 (30%), Gaps = 28/113 (24%)

Query: 13  TKYKVKPLEITEDIVNSKYYKDPL----QLLGEKNFGRPRKIPKDEIGTPIQEFFRDASV 68
           +  K +  + +         +D L    Q+  + N  R +     ++   + E     +V
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY--LKLRQALLELRPAKNV 153

Query: 69  FVTGGTGFMGK-ILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDRIH 120
            + G  G  GK  +   +  +                     +++   + +I 
Sbjct: 154 LIDGVLGS-GKTWVALDVCLS--------------------YKVQCKMDFKIF 185

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 68  VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFED 117
           V + G TG  G+ L++++L   P L  +    R    +    RL+     
Sbjct: 8   VLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKALAE--HPRLDNPVGP 54

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 5/46 (10%)

Query: 57  TPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKH-IYLLVRP 101
            P+          V G TG +G      +  A     H + L+ RP
Sbjct: 5   QPLSRPGAHVKYAVLGATGLLGHHAARAIRAA----GHDLVLIHRP 46

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221

 Score = 37.3 bits (86), Expect = 4e-04
 Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 68  VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR-PKKGKAVQERLEAIFED 117
           + + G TG  G  ++E+      H   +  +VR   K     + +  + +D
Sbjct: 3   IGIIGATGRAGSRILEEAKNR-GH--EVTAIVRNAGKITQTHKDINILQKD 50

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227

 Score = 37.0 bits (86), Expect = 5e-04
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 16/54 (29%)

Query: 68  VFVTGGTGFMGKILVEKLL------RAIPHLKHIYLLVR-PKKGKAVQERLEAI 114
           + + G +GF+G  L+ + L       A         +VR P+K K   E L+  
Sbjct: 7   IVLIGASGFVGSALLNEALNRGFEVTA---------VVRHPEKIKIENEHLKVK 51

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221

 Score = 36.5 bits (84), Expect = 7e-04
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 68  VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEA 113
           + + G  G + + L   LL       HI L  R  K +   E ++ 
Sbjct: 8   ITILGAAGQIAQXLTATLLTYTDM--HITLYGRQLKTRIPPEIIDH 51

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	121
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	98.78
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	98.78
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	98.72
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	98.53
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	98.5
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	98.49
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	98.49
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	98.48
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	98.48
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	98.48
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	98.48
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	98.48
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	98.45
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	98.44
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	98.44
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	98.44
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	98.43
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	98.43
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	98.41
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	98.39
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	98.39
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	98.39
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	98.38
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	98.38
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	98.37
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	98.37
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	98.36
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	98.35
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	98.34
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	98.34
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	98.34
4f6c_A	427	AUSA reductase domain protein; thioester reductase	98.34
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	98.33
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	98.33
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	98.33
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	98.32
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	98.32
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	98.31
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	98.3
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	98.28
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	98.28
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	98.28
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	98.28
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	98.27
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	98.26
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	98.26
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	98.26
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	98.25
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	98.25
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	98.24
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	98.24
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	98.23
4f6l_B	508	AUSA reductase domain protein; thioester reductase	98.23
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	98.23
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	98.23
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	98.21
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	98.21
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	98.21
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	98.21
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	98.21
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	98.2
1xq6_A	253	Unknown protein; structural genomics, protein stru	98.2
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	98.2
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	98.18
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	98.18
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	98.18
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	98.18
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	98.16
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	98.16
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	98.16
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	98.16
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	98.15
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	98.15
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	98.15
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	98.13
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	98.13
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	98.13
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	98.13
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	98.12
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	98.11
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	98.11
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	98.11
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	98.11
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	98.1
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	98.1
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	98.09
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	98.09
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	98.09
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	98.09
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	98.09
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	98.09
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	98.08
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	98.06
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	98.06
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	98.06
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	98.06
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	98.05
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	98.05
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	98.04
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	98.04
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	98.04
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	98.04
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	98.03
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	98.03
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	98.03
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	98.03
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	98.03
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	98.03
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	98.02
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	98.02
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	98.02
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	98.01
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	98.01
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	98.01
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	98.01
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	98.0
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	98.0
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	98.0
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	98.0
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	98.0
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	98.0
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	98.0
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.99
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	97.99
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	97.99
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.99
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.99
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.99
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	97.98
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	97.98
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.98
1xq1_A	266	Putative tropinone reducatse; structural genomics,	97.98
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	97.98
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	97.98
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.97
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.97
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	97.97
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	97.97
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.97
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	97.97
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.97
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	97.97
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.97
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	97.96
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.96
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	97.96
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	97.96
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	97.96
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	97.95
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	97.95
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	97.95
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.95
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.95
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	97.95
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	97.95
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	97.95
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.94
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.94
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.94
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	97.93
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	97.93
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.93
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.93
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	97.92
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	97.91
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.91
1spx_A	278	Short-chain reductase family member (5L265); paral	97.91
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.91
3rih_A	293	Short chain dehydrogenase or reductase; structural	97.91
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	97.91
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	97.91
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.9
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.9
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.9
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.9
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.89
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.89
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	97.89
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.89
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	97.89
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.89
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.88
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.88
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.88
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.87
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.87
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.87
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	97.87
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	97.87
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.86
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.86
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	97.86
3cxt_A	291	Dehydrogenase with different specificities; rossma	97.86
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.86
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	97.85
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.85
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	97.85
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	97.85
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.85
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.85
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	97.85
1xkq_A	280	Short-chain reductase family member (5D234); parra	97.85
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	97.84
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	97.84
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.84
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	97.84
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	97.84
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	97.84
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	97.84
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.84
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	97.84
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	97.84
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.83
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.83
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.83
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	97.83
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	97.83
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	97.83
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.83
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	97.83
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	97.82
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.82
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	97.82
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	97.82
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	97.82
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	97.81
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	97.81
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	97.81
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.81
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	97.81
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	97.81
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.79
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	97.79
1xhl_A	297	Short-chain dehydrogenase/reductase family member	97.79
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	97.79
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.79
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	97.78
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	97.78
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	97.78
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	97.78
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	97.78
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	97.77
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	97.77
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	97.77
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.76
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	97.76
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.75
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	97.75
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	97.75
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	97.75
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	97.74
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	97.74
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	97.74
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	97.73
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	97.73
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	97.72
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	97.7
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	97.7
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.69
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.68
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	97.68
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	97.67
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	97.67
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	97.67
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	97.67
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.66
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.66
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	97.65
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	97.65
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	97.61
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	97.61
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	97.6
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.59
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	97.58
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	97.57
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	97.55
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	97.55
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	97.53
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	97.53
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	97.52
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	97.5
4e4y_A	244	Short chain dehydrogenase family protein; structur	97.47
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	97.46
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	97.46
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.41
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	97.4
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	97.39
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	97.38
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	97.37
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	97.36
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	97.35
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	97.33
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	97.31
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	97.28
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.25
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	97.21
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	97.2
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	97.18
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	97.17
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	97.16
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	97.16
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	96.99
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	96.98
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	96.88
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	96.87
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	96.75
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	96.68
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.62
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	96.61
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.56
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	96.42
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	96.4
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.38
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	96.34
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.24
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	96.24
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.12
3lt0_A	329	Enoyl-ACP reductase; triclosan, triclosan variant,	96.08
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	96.03
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.87
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.4
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.36
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	95.25
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	95.24
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	95.23
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	95.2
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	95.18
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	95.14
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	95.13
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	95.12
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	95.11
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	95.04
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	95.03
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	95.0
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	94.95
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	94.93
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	94.79
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	94.74
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	94.65
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	94.62
4eye_A	342	Probable oxidoreductase; structural genomics, niai	94.58
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	94.58
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	94.57
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	94.53
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.52
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	94.48
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	94.44
3gms_A	340	Putative NADPH:quinone reductase; structural genom	94.36
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	94.35
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	94.35
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	94.33
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	94.31
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	94.31
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	94.31
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	94.3
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	94.2
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	94.14
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	94.12
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	94.05
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	93.91
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	93.85
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	93.79
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	93.74
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	93.73
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	93.61
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	93.59
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	93.52
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	93.52
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.51
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	93.48
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	93.46
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	93.45
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	93.44
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	93.39
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	93.39
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	93.3
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	93.25
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	93.16
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	93.14
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	93.14
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	92.89
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	92.84
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	92.83
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	92.8
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	92.78
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	92.69
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	92.62
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	92.62
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	92.62
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	92.59
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	92.54
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	92.45
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	92.4
1p9o_A	313	Phosphopantothenoylcysteine synthetase; ligase; 2.	92.3
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	92.12
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	92.11
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	92.09
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	92.02
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	91.92
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	91.81
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	91.67
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	91.46
1q0q_A	406	1-deoxy-D-xylulose 5-phosphate reductoisomerase; o	91.39
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	91.36
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	91.16
2duw_A	145	Putative COA-binding protein; ligand binding prote	91.15
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	91.11
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	91.09
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	90.97
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	90.96
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	90.92
3au8_A	488	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	90.86
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	90.85
2y1e_A	398	1-deoxy-D-xylulose 5-phosphate reductoisomerase; o	90.61
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	90.45
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	90.34
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	90.31
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	90.2
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	90.19
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	90.16
1r0k_A	388	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	90.13
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	90.03
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	89.9
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	89.83
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	89.74
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	89.71
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	89.48
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	89.23
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	89.18
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	89.18
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	89.08
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	89.06
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	88.91
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	88.89
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	88.87
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	88.86
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	88.78
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	88.69
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	88.6
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	88.55
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	88.48
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	88.41
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	88.37
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	88.33
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	88.28
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	88.25
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	88.12
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	88.02
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	87.98
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	87.98
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	87.84
3a06_A	376	1-deoxy-D-xylulose 5-phosphate reductoisomerase; M	87.71
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	87.69
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	87.55
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	87.54
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	87.44
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	87.4
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	87.37
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	87.34
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	87.31
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	87.27
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	87.21
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	87.21
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	87.2
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	87.15
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	87.15
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	87.12
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	87.1
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	87.05
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	86.94
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	86.89
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	86.88
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	86.8
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	86.76
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	86.54
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	86.4
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	86.39
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	86.37
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	86.32
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	86.28
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	86.24
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	86.21
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	86.2
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	86.19
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	86.18
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	86.17
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	86.16
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	86.06
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	86.06
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	86.06
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	86.04
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	86.02
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	86.01
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	86.0
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	85.99
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	85.96
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	85.87
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	85.86
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	85.85
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	85.79

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=98.78  E-value=7.7e-09  Score=78.83  Aligned_cols=36  Identities=33%  Similarity=0.459  Sum_probs=32.9

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      |+|+|||||||||++++++|++.|+   +|++++|++..
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~---~V~~l~R~~~~   36 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGH---EVTLVSRKPGP   36 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCCCc
Confidence            6899999999999999999999998   79999997544

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=98.72  E-value=3e-09  Score=87.39  Aligned_cols=71  Identities=25%  Similarity=0.287  Sum_probs=49.8

Q ss_pred             cCChhhhhCCCCCCCCCCCCCCCCCcchhhhhcCCeEEEEcCCChHHHHHHHHHHHh---CCCccEEEEEecCCCCccHH
Q psy3445          32 YKDPLQLLGEKNFGRPRKIPKDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRA---IPHLKHIYLLVRPKKGKAVQ  108 (121)
Q Consensus        32 ~~~~~dLl~r~~~~~~~~~~~~~~~~~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~---~~~~~~V~~l~R~~~~~~~~  108 (121)
                      ++.+++|++|..     ...   +........++|+|+|||||||||++++++|++.   +.   +|++++|+.....+.
T Consensus        48 ~~~~~~~l~~~~-----~~~---~~~~~~~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~---~V~~l~R~~~~~~~~  116 (478)
T 4dqv_A           48 DLTLDRFIDADT-----LAT---AVNLPGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDG---RLICLVRAESDEDAR  116 (478)
T ss_dssp             GCCGGGTSCHHH-----HHH---HHTSCCCCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTC---EEEEEECSSSHHHHH
T ss_pred             cCCHHHhccccc-----ccC---CCCCCCCCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCC---EEEEEECCCCcHHHH
Confidence            677888888741     000   0011123456899999999999999999999998   44   899999987654444


Q ss_pred             HHHHH
Q psy3445         109 ERLEA  113 (121)
Q Consensus       109 ~r~~e  113 (121)
                      +++.+
T Consensus       117 ~~l~~  121 (478)
T 4dqv_A          117 RRLEK  121 (478)
T ss_dssp             HHHHG
T ss_pred             HHHHH
Confidence            44443

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=98.53  E-value=8.8e-08  Score=70.64  Aligned_cols=43  Identities=21%  Similarity=0.328  Sum_probs=34.3

Q ss_pred             hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      -...+++|+|+||||||+||++++++|++.|+   +|++++|+...
T Consensus        15 ~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~---~V~~~~R~~~~   57 (236)
T 3e8x_A           15 ENLYFQGMRVLVVGANGKVARYLLSELKNKGH---EPVAMVRNEEQ   57 (236)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSGGG
T ss_pred             cccCcCCCeEEEECCCChHHHHHHHHHHhCCC---eEEEEECChHH
Confidence            34567899999999999999999999999987   79999998654

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=98.50  E-value=1.2e-07  Score=72.46  Aligned_cols=40  Identities=28%  Similarity=0.330  Sum_probs=35.7

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ..++++++|+||||+||||++++++|++.|+   +|++++|+.
T Consensus         6 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~r~~   45 (342)
T 1y1p_A            6 AVLPEGSLVLVTGANGFVASHVVEQLLEHGY---KVRGTARSA   45 (342)
T ss_dssp             CSSCTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             ccCCCCCEEEEECCccHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            3456789999999999999999999999987   799999974

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=98.49  E-value=1.6e-07  Score=72.59  Aligned_cols=45  Identities=20%  Similarity=0.132  Sum_probs=32.7

Q ss_pred             CCcchhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          55 IGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        55 ~~~~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++......+++|+|+|||||||||++++++|++.|+   +|++++|..
T Consensus        11 ~~~~~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~r~~   55 (333)
T 2q1w_A           11 SSGLVPRGSHMKKVFITGICGQIGSHIAELLLERGD---KVVGIDNFA   55 (333)
T ss_dssp             ----------CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCS
T ss_pred             cCceeeecCCCCEEEEeCCccHHHHHHHHHHHHCCC---EEEEEECCC
Confidence            344556677889999999999999999999999986   799999964

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=98.49  E-value=1.8e-07  Score=72.29  Aligned_cols=41  Identities=32%  Similarity=0.438  Sum_probs=36.2

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ..+++|+|+|||||||||++++++|++.|+   +|++++|....
T Consensus        21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~   61 (351)
T 3ruf_A           21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQ---VVIGLDNFSTG   61 (351)
T ss_dssp             HHHSCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSSC
T ss_pred             CCCCCCeEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCCCC
Confidence            346789999999999999999999999987   89999997654

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=98.48  E-value=1.7e-07  Score=71.72  Aligned_cols=38  Identities=24%  Similarity=0.211  Sum_probs=33.7

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++|+|+||||+||||++++++|++.|+   +|++++|+...
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~---~V~~~~r~~~~   39 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGY---EVYGADRRSGE   39 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEECSCCST
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEECCCcc
Confidence            578999999999999999999999987   79999997643

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=98.48  E-value=1.9e-07  Score=71.86  Aligned_cols=37  Identities=32%  Similarity=0.475  Sum_probs=33.3

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +|+|+||||+||||++++++|++.|+   +|++++|+...
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~---~V~~~~r~~~~   45 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGY---AVNTTVRDPDN   45 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTC---EEEEEESCTTC
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC---EEEEEEcCcch
Confidence            68999999999999999999999987   79999997543

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=98.48  E-value=2.1e-07  Score=72.22  Aligned_cols=41  Identities=29%  Similarity=0.301  Sum_probs=36.3

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ..+++|+|+||||+||||++++++|++.|+   +|++++|+...
T Consensus         5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~   45 (357)
T 1rkx_A            5 SFWQGKRVFVTGHTGFKGGWLSLWLQTMGA---TVKGYSLTAPT   45 (357)
T ss_dssp             HHHTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCSS
T ss_pred             hhhCCCEEEEECCCchHHHHHHHHHHhCCC---eEEEEeCCCcc
Confidence            457889999999999999999999999987   79999997543

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=98.48  E-value=1.5e-07  Score=74.00  Aligned_cols=46  Identities=28%  Similarity=0.477  Sum_probs=37.2

Q ss_pred             CCcchhhhhcCCeEEEEcCCChHHHHHHHHHHHh-CCCccEEEEEecCC
Q psy3445          55 IGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRA-IPHLKHIYLLVRPK  102 (121)
Q Consensus        55 ~~~~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~-~~~~~~V~~l~R~~  102 (121)
                      ..+++..++++|+|+|||||||||++++++|++. |+.  +|+++.|+.
T Consensus        11 ~~~~~~~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~--~V~~~~r~~   57 (344)
T 2gn4_A           11 SMPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTTNAK--KIIVYSRDE   57 (344)
T ss_dssp             -----CCTTTTCEEEEETTTSHHHHHHHHHHHHHCCCS--EEEEEESCH
T ss_pred             CCccHHHhhCCCEEEEECCCcHHHHHHHHHHHhhCCCC--EEEEEECCh
Confidence            3456677889999999999999999999999999 763  799999974

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=98.48  E-value=1.3e-07  Score=72.90  Aligned_cols=43  Identities=16%  Similarity=0.062  Sum_probs=31.5

Q ss_pred             chhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          58 PIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        58 ~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +-....++|+|+|||||||||++++++|++.|+   +|++++|...
T Consensus        12 ~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~---~V~~~~r~~~   54 (347)
T 4id9_A           12 SGLVPRGSHMILVTGSAGRVGRAVVAALRTQGR---TVRGFDLRPS   54 (347)
T ss_dssp             ---------CEEEETTTSHHHHHHHHHHHHTTC---CEEEEESSCC
T ss_pred             CcccccCCCEEEEECCCChHHHHHHHHHHhCCC---EEEEEeCCCC
Confidence            344566889999999999999999999999987   6999999754

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=98.45  E-value=2.7e-07  Score=72.01  Aligned_cols=40  Identities=18%  Similarity=0.341  Sum_probs=34.2

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHh-CCCccEEEEEecCCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRA-IPHLKHIYLLVRPKKG  104 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~-~~~~~~V~~l~R~~~~  104 (121)
                      .+++|+|+|||||||||++++++|++. ++   +|++++|+...
T Consensus        21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~---~V~~~~r~~~~   61 (372)
T 3slg_A           21 SMKAKKVLILGVNGFIGHHLSKRILETTDW---EVFGMDMQTDR   61 (372)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHHSSC---EEEEEESCCTT
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCC---EEEEEeCChhh
Confidence            456789999999999999999999998 66   79999997543

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=98.44  E-value=2.6e-07  Score=66.59  Aligned_cols=35  Identities=20%  Similarity=0.245  Sum_probs=32.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+|+|||||||||++++++|++.|+   +|++++|+..
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~---~V~~~~R~~~   35 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH---EVTAIVRNAG   35 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCSH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC---EEEEEEcCch
Confidence            5799999999999999999999986   8999999753

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=98.44  E-value=2.2e-07  Score=70.76  Aligned_cols=35  Identities=34%  Similarity=0.566  Sum_probs=31.4

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec-CC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR-PK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R-~~  102 (121)
                      +|+|+|||||||||++++++|++.|+   +|++++| +.
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~---~V~~~~r~~~   36 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGY---SVNTTIRADP   36 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC---EEEEECCCC-
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCC---EEEEEEeCCc
Confidence            57899999999999999999999987   7999998 54

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=98.44  E-value=2e-07  Score=70.64  Aligned_cols=38  Identities=24%  Similarity=0.416  Sum_probs=33.2

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++|+|||||||||++++++|++.|+   +|++++|+..
T Consensus         5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~   42 (321)
T 3vps_A            5 TLKHRILITGGAGFIGGHLARALVASGE---EVTVLDDLRV   42 (321)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC---CEEEECCCSS
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHHCCC---EEEEEecCCc
Confidence            3578999999999999999999999987   6999999755

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=98.43  E-value=2.2e-07  Score=71.76  Aligned_cols=40  Identities=23%  Similarity=0.301  Sum_probs=35.6

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ...+++|+|+||||+||||++++++|++.|+   +|++++|..
T Consensus        15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~---~V~~~~r~~   54 (330)
T 2pzm_A           15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGH---EILVIDNFA   54 (330)
T ss_dssp             CSTTTCCEEEEETTTSHHHHHHHHHHGGGTC---EEEEEECCS
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCC
Confidence            4466889999999999999999999999986   799999954

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=98.43  E-value=2.1e-07  Score=71.72  Aligned_cols=38  Identities=34%  Similarity=0.489  Sum_probs=32.9

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++++|+||||+||||++++++|++.|+   +|++++|+...
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~---~V~~~~r~~~~   41 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGY---TVRATVRDPTN   41 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCTTC
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC---EEEEEECCcch
Confidence            568999999999999999999999987   79999997653

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=98.41  E-value=3.3e-07  Score=66.45  Aligned_cols=34  Identities=26%  Similarity=0.334  Sum_probs=31.5

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+|+|||||||||++++++|++.|+   +|++++|+.
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~---~V~~~~R~~   34 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGH---EVLAVVRDP   34 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCC---EEEEEEecc
Confidence            5799999999999999999999987   899999974

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=98.39  E-value=4.2e-07  Score=69.67  Aligned_cols=38  Identities=32%  Similarity=0.254  Sum_probs=32.9

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+++|+||||+||||++++++|++.|+   +|++++|+...
T Consensus        13 ~~~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~   50 (335)
T 1rpn_A           13 MTRSALVTGITGQDGAYLAKLLLEKGY---RVHGLVARRSS   50 (335)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCCSS
T ss_pred             cCCeEEEECCCChHHHHHHHHHHHCCC---eEEEEeCCCcc
Confidence            568999999999999999999999986   79999997543

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=98.39  E-value=3.5e-07  Score=71.81  Aligned_cols=38  Identities=18%  Similarity=0.295  Sum_probs=31.0

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .++.+++|+|||||||||++++++|++.|+   +|++++|.
T Consensus         7 ~~~~~~~vlVTG~tGfIG~~l~~~L~~~G~---~V~~~~r~   44 (404)
T 1i24_A            7 HHHHGSRVMVIGGDGYCGWATALHLSKKNY---EVCIVDNL   44 (404)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             cccCCCeEEEeCCCcHHHHHHHHHHHhCCC---eEEEEEec
Confidence            456789999999999999999999999987   79999885

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=98.39  E-value=4.2e-07  Score=70.90  Aligned_cols=38  Identities=21%  Similarity=0.499  Sum_probs=34.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHH--hCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLR--AIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~--~~~~~~~V~~l~R~~~  103 (121)
                      +++|+|+||||+||||++++++|++  .++   +|++++|...
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~---~V~~~~r~~~   47 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQENHPKA---KVVVLDKFRS   47 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHCTTS---EEEEEECCCC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHhhCCCC---eEEEEECCCc
Confidence            5689999999999999999999999  776   8999999654

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=98.38  E-value=4.1e-07  Score=64.68  Aligned_cols=36  Identities=22%  Similarity=0.273  Sum_probs=32.5

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +|+|+||||||+||++++++|++.++   +|+++.|+..
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~---~V~~~~r~~~   38 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGY---EVTVLVRDSS   38 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCGG
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC---eEEEEEeChh
Confidence            47999999999999999999999986   7999999743

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=98.38  E-value=4.7e-07  Score=68.97  Aligned_cols=40  Identities=23%  Similarity=0.387  Sum_probs=32.3

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+.+.++|+||||+||||++++++|++.|+   +|++++|+..
T Consensus         8 ~~~~~~~vlVTGatG~iG~~l~~~L~~~G~---~V~~~~r~~~   47 (321)
T 2pk3_A            8 HHHGSMRALITGVAGFVGKYLANHLTEQNV---EVFGTSRNNE   47 (321)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCTT
T ss_pred             cccCcceEEEECCCChHHHHHHHHHHHCCC---EEEEEecCCc
Confidence            355678999999999999999999999987   7999999754

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=98.37  E-value=5.3e-07  Score=69.12  Aligned_cols=38  Identities=24%  Similarity=0.342  Sum_probs=33.6

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ..|+|+|||||||||++++++|++.|+   +|++++|+...
T Consensus        12 ~~M~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~   49 (342)
T 2x4g_A           12 AHVKYAVLGATGLLGHHAARAIRAAGH---DLVLIHRPSSQ   49 (342)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEECTTSC
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEecChHh
Confidence            346899999999999999999999986   79999997543

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=98.37  E-value=3.3e-07  Score=69.12  Aligned_cols=51  Identities=12%  Similarity=0.179  Sum_probs=38.2

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHHHHhh
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFE  116 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~e~~~  116 (121)
                      ...++|+|||||||||++++++|++.|+   +|++++|+.......+.+.+++.
T Consensus        10 ~~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~Dl~d~~~~~~~~~   60 (292)
T 1vl0_A           10 HHHMKILITGANGQLGREIQKQLKGKNV---EVIPTDVQDLDITNVLAVNKFFN   60 (292)
T ss_dssp             --CEEEEEESTTSHHHHHHHHHHTTSSE---EEEEECTTTCCTTCHHHHHHHHH
T ss_pred             cccceEEEECCCChHHHHHHHHHHhCCC---eEEeccCccCCCCCHHHHHHHHH
Confidence            3468999999999999999999999876   79999997443333344555544

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=98.36  E-value=4.9e-07  Score=68.64  Aligned_cols=36  Identities=33%  Similarity=0.567  Sum_probs=32.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      |+|+|||||||||++++++|++.|+   +|++++|....
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~   36 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY---EVVVVDNLSSG   36 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEECCCSSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC---EEEEEeCCCCC
Confidence            6899999999999999999999987   79999996543

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=98.35  E-value=4.2e-07  Score=69.24  Aligned_cols=36  Identities=22%  Similarity=0.291  Sum_probs=30.1

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +|+|+|||||||||++++++|++.|+   +|++++|+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~   37 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNW---HAVGCGFRRA   37 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC---EEEEEC----
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCC---eEEEEccCCC
Confidence            58999999999999999999999986   7999998643

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=98.34  E-value=4.5e-07  Score=69.80  Aligned_cols=42  Identities=17%  Similarity=0.422  Sum_probs=34.4

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCC----ccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPH----LKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~----~~~V~~l~R~~~  103 (121)
                      ++++|+|+||||+||||++++++|++.|+.    ..+|++++|...
T Consensus        11 ~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~   56 (342)
T 2hrz_A           11 YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQP   56 (342)
T ss_dssp             CCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCC
T ss_pred             CccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCC
Confidence            367899999999999999999999999820    017999999653

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=98.34  E-value=3.6e-07  Score=66.61  Aligned_cols=35  Identities=31%  Similarity=0.465  Sum_probs=32.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+|+||||||+||++++++|++.|+   +|++++|+..
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~---~V~~~~R~~~   35 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDY---QIYAGARKVE   35 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSC---EEEEEESSGG
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCcc
Confidence            5899999999999999999999986   8999999754

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=98.34  E-value=6.6e-07  Score=69.17  Aligned_cols=41  Identities=22%  Similarity=0.324  Sum_probs=33.0

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ...+++++|+|||||||||++++++|++.++   +|++++|...
T Consensus        22 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~   62 (343)
T 2b69_A           22 HMEKDRKRILITGGAGFVGSHLTDKLMMDGH---EVTVVDNFFT   62 (343)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSS
T ss_pred             ccccCCCEEEEEcCccHHHHHHHHHHHHCCC---EEEEEeCCCc
Confidence            3446789999999999999999999999986   7999999643

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=98.34  E-value=3.5e-07  Score=73.25  Aligned_cols=45  Identities=29%  Similarity=0.468  Sum_probs=36.4

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHH
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLE  112 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~  112 (121)
                      +++|+|||||||||++++++|++.+.   +|++++|+.....+.+++.
T Consensus        69 ~~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~R~~~~~~~~~~l~  113 (427)
T 4f6c_A           69 LGNTLLTGATGFLGAYLIEALQGYSH---RIYCFIRADNEEIAWYKLM  113 (427)
T ss_dssp             CEEEEEECTTSHHHHHHHHHHTTTEE---EEEEEEECSSHHHHHHHHH
T ss_pred             CCEEEEecCCcHHHHHHHHHHHcCCC---EEEEEECCCChHHHHHHHH
Confidence            46999999999999999999987765   8999999876443444443

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=98.33  E-value=7.3e-07  Score=70.17  Aligned_cols=39  Identities=28%  Similarity=0.471  Sum_probs=34.9

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhC-CCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAI-PHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~-~~~~~V~~l~R~~~  103 (121)
                      .+++|+|+|||||||||++++++|++.+ +   +|++++|...
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~---~V~~~~r~~~   68 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVN---QVHVVDNLLS   68 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCS---EEEEECCCTT
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCc---eEEEEECCCC
Confidence            4678999999999999999999999998 6   7999999754

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=98.33  E-value=3.5e-07  Score=66.56  Aligned_cols=35  Identities=23%  Similarity=0.436  Sum_probs=32.2

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+|+|||||||||++++++|++.++   +|++++|+..
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~---~V~~~~r~~~   39 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGF---EVTAVVRHPE   39 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTC---EEEEECSCGG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC---EEEEEEcCcc
Confidence            7899999999999999999999986   8999999754

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=98.33  E-value=6.4e-07  Score=76.12  Aligned_cols=68  Identities=24%  Similarity=0.193  Sum_probs=43.4

Q ss_pred             ccccCChhhhhCCCCCCCCCCCCCCCCCcchhhhhcCCeEEEEcCCChHHHHHHHHHHHh-CCCccEEEEEecCCC
Q psy3445          29 SKYYKDPLQLLGEKNFGRPRKIPKDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRA-IPHLKHIYLLVRPKK  103 (121)
Q Consensus        29 ~~~~~~~~dLl~r~~~~~~~~~~~~~~~~~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~-~~~~~~V~~l~R~~~  103 (121)
                      ++.....+|++++.. ..+...+   .....+..+++|+|+|||||||||++++++|++. ++   +|++++|+..
T Consensus       283 g~~~m~a~d~l~g~~-l~~g~~l---~~~~~~~~~~~~~VLVTGatG~IG~~l~~~Ll~~~g~---~V~~~~r~~~  351 (660)
T 1z7e_A          283 DGITMQGSQLAQTLG-LVQGSRL---NSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHY---EVYGLDIGSD  351 (660)
T ss_dssp             TSCCEEHHHHHHTTT-CSSSCCC------------CCEEEEEETTTSHHHHHHHHHHHHSSSE---EEEEEESCCT
T ss_pred             CCCcccHHHHHhhcC-CCCCccc---CCCcchhhccCceEEEEcCCcHHHHHHHHHHHhcCCC---EEEEEEcCch
Confidence            333566777776632 1111122   2233445568899999999999999999999997 55   7999999754

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=98.32  E-value=8e-07  Score=68.92  Aligned_cols=38  Identities=26%  Similarity=0.322  Sum_probs=34.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +.+|+|+|||||||||++++++|++.++   +|++++|...
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~   62 (352)
T 1sb8_A           25 AQPKVWLITGVAGFIGSNLLETLLKLDQ---KVVGLDNFAT   62 (352)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSS
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCCc
Confidence            5678999999999999999999999986   7999999754

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=98.32  E-value=7e-07  Score=68.15  Aligned_cols=34  Identities=35%  Similarity=0.570  Sum_probs=31.9

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .|+|+|||||||||++++++|++.++   +|++++|+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~   35 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN---TPIILTRS   35 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC---EEEEEeCC
Confidence            47899999999999999999999987   79999998

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=98.31  E-value=7.7e-07  Score=68.32  Aligned_cols=38  Identities=21%  Similarity=0.365  Sum_probs=34.0

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+|+|+||||+||||++++++|++.|+   +|++++|....
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~---~V~~~~r~~~~   41 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGY---DVVIADNLVNS   41 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTC---EEEEECCCSSS
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCC---cEEEEecCCcc
Confidence            468999999999999999999999987   79999997544

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=98.30  E-value=4e-07  Score=68.49  Aligned_cols=48  Identities=23%  Similarity=0.314  Sum_probs=37.6

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHHHHhh
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFE  116 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~e~~~  116 (121)
                      |+|+|||||||||++++++|++.|+   +|++++|........+.+.+++.
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~D~~d~~~~~~~~~   53 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEY---DIYPFDKKLLDITNISQVQQVVQ   53 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTE---EEEEECTTTSCTTCHHHHHHHHH
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC---EEEEecccccCCCCHHHHHHHHH
Confidence            4899999999999999999999876   89999996544333444555554

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=98.28  E-value=4.2e-07  Score=70.27  Aligned_cols=39  Identities=26%  Similarity=0.339  Sum_probs=32.3

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCC--CccEEEEEecCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIP--HLKHIYLLVRPKK  103 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~--~~~~V~~l~R~~~  103 (121)
                      +|+|+|||||||||++++++|++.++  ...+|++++|+..
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~   41 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTR   41 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCC
Confidence            47899999999999999999999871  0017999999754

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=98.28  E-value=9.7e-07  Score=73.08  Aligned_cols=37  Identities=27%  Similarity=0.421  Sum_probs=33.8

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +|+|+|||||||||++++++|++.|+   +|++++|+...
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~---~V~~l~R~~~~  183 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH---EVIQLVRKEPK  183 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESSSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCCCC
Confidence            68999999999999999999999987   89999997554

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=98.28  E-value=1e-06  Score=67.44  Aligned_cols=38  Identities=24%  Similarity=0.477  Sum_probs=31.9

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++|+|+||||+||||++++++|++.++. .+|++++|..
T Consensus         2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~-~~V~~~~r~~   39 (336)
T 2hun_A            2 HSMKLLVTGGMGFIGSNFIRYILEKHPD-WEVINIDKLG   39 (336)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHCTT-CEEEEEECCC
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHhCCC-CEEEEEecCc
Confidence            4678999999999999999999999732 2799999864

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=98.28  E-value=7.1e-07  Score=69.35  Aligned_cols=39  Identities=31%  Similarity=0.510  Sum_probs=31.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhC-CCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAI-PHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~-~~~~~V~~l~R~~~~  104 (121)
                      +++|+|+|||||||||++++++|++.| +   +|+++.|....
T Consensus        44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~---~V~~~~r~~~~   83 (357)
T 2x6t_A           44 IEGRMIIVTGGAGFIGSNIVKALNDKGIT---DILVVDNLKDG   83 (357)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCC---CEEEEECCSSG
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCc---EEEEEecCCCc
Confidence            567899999999999999999999998 5   69999997543

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=98.27  E-value=1.1e-06  Score=64.49  Aligned_cols=41  Identities=27%  Similarity=0.488  Sum_probs=35.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++|+|+||||+|+||++++++|++.|+. .+|++++|+...
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~-~~V~~~~r~~~~   56 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLF-SKVTLIGRRKLT   56 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCC-SEEEEEESSCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCC-CEEEEEEcCCCC
Confidence            57899999999999999999999999761 269999997653

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=98.26  E-value=7.3e-07  Score=67.50  Aligned_cols=37  Identities=19%  Similarity=0.308  Sum_probs=32.6

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHh--CCCccEEEEEecCCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRA--IPHLKHIYLLVRPKKG  104 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~--~~~~~~V~~l~R~~~~  104 (121)
                      +|+|+|||||||||++++++|++.  ++   +|++++|+...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~---~V~~~~r~~~~   40 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTE---NVIASDIRKLN   40 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGG---GEEEEESCCCS
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCC---EEEEEcCCCcc
Confidence            578999999999999999999998  66   69999997544

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=98.26  E-value=1.1e-06  Score=67.72  Aligned_cols=39  Identities=26%  Similarity=0.419  Sum_probs=32.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++|+|+|||||||||++++++|++.|+. .+|+++.|..
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~-~~v~~~~~~~   60 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYET-YKIINFDALT   60 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTT-EEEEEEECCC
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCC-cEEEEEeccc
Confidence            56789999999999999999999999854 3788888754

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=98.26  E-value=8.3e-07  Score=68.96  Aligned_cols=36  Identities=33%  Similarity=0.651  Sum_probs=31.9

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ..++|+|||||||||++++++|++.++   +|++++|+.
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L~~~g~---~V~~l~R~~   44 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATASLDAHR---PTYILARPG   44 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHHHHTTC---CEEEEECSS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC---CEEEEECCC
Confidence            457899999999999999999999986   799999976

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=98.25  E-value=1.1e-06  Score=67.22  Aligned_cols=35  Identities=34%  Similarity=0.512  Sum_probs=31.3

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHh-CCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRA-IPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~-~~~~~~V~~l~R~~~  103 (121)
                      |+|+|||||||||++++++|++. ++   +|++++|+..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~---~V~~~~r~~~   36 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY---EVYGLDIGSD   36 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC---EEEEEESCCG
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC---EEEEEeCCcc
Confidence            58999999999999999999997 66   7999999754

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=98.25  E-value=1.4e-06  Score=68.64  Aligned_cols=38  Identities=16%  Similarity=0.228  Sum_probs=33.7

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++|+|+|||||||||++++++|++.++   +|++++|+...
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~   65 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGH---YVIASDWKKNE   65 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCCS
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCC---eEEEEECCCcc
Confidence            468999999999999999999999986   79999997543

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=98.24  E-value=1e-06  Score=66.70  Aligned_cols=35  Identities=29%  Similarity=0.470  Sum_probs=32.2

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+||||||++|++++++|++.|+   +|++++|+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN---PTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC---CEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC---cEEEEECCC
Confidence            57899999999999999999999986   699999986

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=98.24  E-value=1.5e-06  Score=68.13  Aligned_cols=37  Identities=24%  Similarity=0.426  Sum_probs=32.7

Q ss_pred             CCeEEEEcCCChHHHHHHHHHH-HhCCCccEEEEEecCCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLL-RAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll-~~~~~~~~V~~l~R~~~~  104 (121)
                      +|+|+||||+||||++++++|+ +.++   +|++++|....
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~---~V~~~~r~~~~   39 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNH---SVVIVDSLVGT   39 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC---EEEEEECCTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCC---EEEEEecCCcc
Confidence            5799999999999999999999 8876   79999997543

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=98.23  E-value=1.5e-06  Score=66.38  Aligned_cols=35  Identities=23%  Similarity=0.472  Sum_probs=31.5

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+|+||||+||||++++++|++.++   +|++++|...
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~   36 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGL---SVVVVDNLQT   36 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSS
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCC---EEEEEeCCCc
Confidence            6899999999999999999999986   7999998643

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=98.23  E-value=4.7e-07  Score=74.38  Aligned_cols=45  Identities=29%  Similarity=0.468  Sum_probs=36.1

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHH
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLE  112 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~  112 (121)
                      .++|+|||||||||++++++|+..+.   +|++++|+.......+++.
T Consensus       150 ~~~VLVTGatG~iG~~l~~~L~~~g~---~V~~l~R~~~~~~~~~~l~  194 (508)
T 4f6l_B          150 LGNTLLTGATGFLGAYLIEALQGYSH---RIYCFIRADNEEIAWYKLM  194 (508)
T ss_dssp             CEEEEESCTTSHHHHHHHHHTBTTEE---EEEEEEESSSHHHHHHHHH
T ss_pred             CCeEEEECCccchHHHHHHHHHhcCC---EEEEEECCCChHHHHHHHH
Confidence            47899999999999999999977655   8999999876543444443

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=98.23  E-value=1.4e-06  Score=67.09  Aligned_cols=35  Identities=31%  Similarity=0.387  Sum_probs=31.7

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +|+|+||||+||||++++++|++.|+   +|++++|..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~   36 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGY---LPVVIDNFH   36 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC---CEEEEECSS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEecCC
Confidence            57999999999999999999999987   699998854

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=98.23  E-value=1.6e-06  Score=67.96  Aligned_cols=35  Identities=31%  Similarity=0.272  Sum_probs=31.9

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++|+||||+||||++++++|++.|+   +|++++|+..
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~---~V~~~~r~~~   63 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY---EVHGLIRRSS   63 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCCS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC---EEEEEecCCc
Confidence            6899999999999999999999986   7999999754

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=98.21  E-value=1.9e-06  Score=63.27  Aligned_cols=36  Identities=25%  Similarity=0.253  Sum_probs=32.3

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      |+|+||||+|+||++++++|++.|+   +|++++|+...
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~---~V~~~~r~~~~   37 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGH---TVIGIDRGQAD   37 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSSSS
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCC---EEEEEeCChhH
Confidence            5799999999999999999999987   79999997543

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=98.21  E-value=1.5e-06  Score=66.64  Aligned_cols=33  Identities=27%  Similarity=0.431  Sum_probs=30.6

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      |+|+|||||||||++++++|++.|+   +|++++|.
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~r~   34 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGI---DLIVFDNL   34 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCC---EEEEEeCC
Confidence            5899999999999999999999987   79999985

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=98.21  E-value=1.4e-06  Score=67.64  Aligned_cols=36  Identities=28%  Similarity=0.241  Sum_probs=30.7

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +|+|+||||+||||++++++|++.|+   +|++++|+..
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~   36 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGY---EVHGIKRRAS   36 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEECC---
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC---EEEEEECCCc
Confidence            37899999999999999999999986   7999999754

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=98.21  E-value=1.5e-06  Score=65.53  Aligned_cols=33  Identities=21%  Similarity=0.271  Sum_probs=30.0

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+|+|||||||||++++++|+ .++   +|++++|+.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~---~V~~~~r~~   33 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVG---NLIALDVHS   33 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTS---EEEEECTTC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCC---eEEEecccc
Confidence            579999999999999999999 776   899999975

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=98.21  E-value=2.1e-06  Score=65.07  Aligned_cols=37  Identities=27%  Similarity=0.343  Sum_probs=33.5

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhC-CCccEEEEEecCCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAI-PHLKHIYLLVRPKKG  104 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~-~~~~~V~~l~R~~~~  104 (121)
                      .|+|+||||||++|++++++|++.+ +   +|++++|++..
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~---~V~~~~R~~~~   42 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF---KVRVVTRNPRK   42 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS---EEEEEESCTTS
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc---eEEEEEcCCCC
Confidence            5789999999999999999999987 5   79999998654

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=98.20  E-value=3.3e-06  Score=62.37  Aligned_cols=39  Identities=21%  Similarity=0.228  Sum_probs=35.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC-CCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP-KKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~-~~~  104 (121)
                      +++++++||||+|+||++++++|++.|+   +|+++.|+ ...
T Consensus         5 l~~k~vlVTGasggiG~~~a~~l~~~G~---~V~~~~r~~~~~   44 (258)
T 3afn_B            5 LKGKRVLITGSSQGIGLATARLFARAGA---KVGLHGRKAPAN   44 (258)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCCTT
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEECCCchhh
Confidence            5789999999999999999999999987   79999997 443

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=98.20  E-value=2.1e-06  Score=62.69  Aligned_cols=36  Identities=33%  Similarity=0.350  Sum_probs=32.3

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHh--CCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRA--IPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~--~~~~~~V~~l~R~~  102 (121)
                      .+++|+||||+|+||++++++|++.  ++   +|+++.|+.
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~---~V~~~~r~~   40 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF---VAKGLVRSA   40 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTC---EEEEEESCH
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCc---EEEEEEcCC
Confidence            4689999999999999999999998  55   799999964

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=98.20  E-value=1e-06  Score=66.39  Aligned_cols=35  Identities=26%  Similarity=0.493  Sum_probs=30.9

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHh-CCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRA-IPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~-~~~~~~V~~l~R~~~  103 (121)
                      |+|+|||||||||++++++|++. +.   +|++++|++.
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~---~V~~~~R~~~   36 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHID---HFHIGVRNVE   36 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCT---TEEEEESSGG
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCC---cEEEEECCHH
Confidence            57999999999999999998887 65   6999999754

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=98.18  E-value=1.6e-06  Score=65.58  Aligned_cols=37  Identities=24%  Similarity=0.496  Sum_probs=32.9

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .++|+||||||++|++++++|++.|+   +|++++|+...
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~l~R~~~~   40 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGH---PTFLLVRESTA   40 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC---CEEEECCCCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC---CEEEEECCccc
Confidence            47899999999999999999999986   69999998543

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=98.18  E-value=1e-06  Score=67.06  Aligned_cols=36  Identities=19%  Similarity=0.302  Sum_probs=31.6

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+|+|+|||||||||++++++|++.++   +|+++.|..
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~---~v~~~~r~~   37 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGD---VELVLRTRD   37 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTT---EEEECCCTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCC---eEEEEecCc
Confidence            457999999999999999999999886   688888753

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=98.18  E-value=2.4e-06  Score=62.84  Aligned_cols=37  Identities=22%  Similarity=0.284  Sum_probs=33.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|+||++++++|++.|.   +|+++.|+.
T Consensus         5 ~~~~~vlVTGasggiG~~~a~~l~~~G~---~V~~~~r~~   41 (244)
T 1cyd_A            5 FSGLRALVTGAGKGIGRDTVKALHASGA---KVVAVTRTN   41 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999987   799999974

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=98.18  E-value=8.6e-07  Score=66.89  Aligned_cols=37  Identities=22%  Similarity=0.304  Sum_probs=33.1

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++|+|+||||+|+||++++++|++.|.   +|+++.|+..
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~---~V~~~~r~~~   38 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAE---ILRLADLSPL   38 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEE---EEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCC---EEEEEecCCc
Confidence            457899999999999999999999986   7999999764

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=98.16  E-value=3.7e-06  Score=62.45  Aligned_cols=39  Identities=21%  Similarity=0.362  Sum_probs=34.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+...
T Consensus        12 ~~~k~vlITGasggiG~~~a~~l~~~G~---~V~~~~r~~~~   50 (265)
T 1h5q_A           12 FVNKTIIVTGGNRGIGLAFTRAVAAAGA---NVAVIYRSAAD   50 (265)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTE---EEEEEESSCTT
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeCcchh
Confidence            5789999999999999999999999986   79999996543

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=98.16  E-value=2.5e-06  Score=65.58  Aligned_cols=34  Identities=29%  Similarity=0.538  Sum_probs=30.7

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHh--CCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRA--IPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~--~~~~~~V~~l~R~~  102 (121)
                      |+|+||||+||||++++++|++.  ++   +|++++|..
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~---~V~~~~r~~   40 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDV---HVTVLDKLT   40 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTC---EEEEEECCC
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCC---EEEEEeCCC
Confidence            68999999999999999999998  54   799999964

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=98.16  E-value=2.2e-06  Score=61.56  Aligned_cols=40  Identities=23%  Similarity=0.419  Sum_probs=33.9

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+|+|+||||+|+||++++++|++.++ ..+|++++|+...
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~-~~~V~~~~r~~~~   43 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPT-LAKVIAPARKALA   43 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTT-CCEEECCBSSCCC
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCC-CCeEEEEeCCCcc
Confidence            468999999999999999999999875 1279999997643

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=98.16  E-value=1.9e-06  Score=65.31  Aligned_cols=37  Identities=32%  Similarity=0.614  Sum_probs=33.0

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .++|+|||||||+|++++++|++.++   +|++++|+...
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~R~~~~   40 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH---PTYVLFRPEVV   40 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC---CEEEECCSCCS
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC---cEEEEECCCcc
Confidence            47899999999999999999999986   69999998643

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=98.15  E-value=2.3e-06  Score=65.09  Aligned_cols=33  Identities=39%  Similarity=0.579  Sum_probs=30.2

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      |+|+||||+||||++++++|++.|+   +|+++.|.
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~---~V~~~~r~   33 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGL---EVAVLDNL   33 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC---EEEEECCC
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC---EEEEEECC
Confidence            5799999999999999999999987   79999884

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=98.15  E-value=2.9e-06  Score=66.32  Aligned_cols=35  Identities=31%  Similarity=0.286  Sum_probs=31.8

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++|+||||+||||++++++|++.|+   +|++++|+..
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~   59 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY---EVHGIVRRSS   59 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCCS
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC---EEEEEECCcc
Confidence            5899999999999999999999986   7999999754

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=98.15  E-value=8.8e-07  Score=66.44  Aligned_cols=36  Identities=33%  Similarity=0.557  Sum_probs=31.8

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHh--CCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRA--IPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~--~~~~~~V~~l~R~~~~  104 (121)
                      |+|+|||||||||++++++|++.  ++   +|++++|+...
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~---~V~~~~r~~~~   38 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS---QIIAIVRNVEK   38 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG---GEEEEESCTTT
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC---eEEEEEcCHHH
Confidence            57999999999999999999998  65   69999997654

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=98.13  E-value=4.4e-06  Score=62.34  Aligned_cols=46  Identities=22%  Similarity=0.261  Sum_probs=35.1

Q ss_pred             hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ....+++++|+||||+|+||.+++++|++.+....+|+++.|+...
T Consensus        15 ~~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~   60 (267)
T 1sny_A           15 VPRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQ   60 (267)
T ss_dssp             -----CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTS
T ss_pred             cccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhh
Confidence            3456788999999999999999999999998211189999998654

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=98.13  E-value=6.8e-06  Score=61.11  Aligned_cols=39  Identities=26%  Similarity=0.372  Sum_probs=35.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++++++||||+|+||.+++++|++.|.   +|+++.|+...
T Consensus        10 ~~~k~vlVTGasggiG~~~a~~l~~~G~---~V~~~~r~~~~   48 (265)
T 2o23_A           10 VKGLVAVITGGASGLGLATAERLVGQGA---SAVLLDLPNSG   48 (265)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECTTSS
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCcHh
Confidence            5789999999999999999999999987   79999998654

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=98.13  E-value=2.3e-06  Score=65.39  Aligned_cols=35  Identities=29%  Similarity=0.594  Sum_probs=32.2

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++|+||||||++|++++++|++.++   +|++++|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~R~~   38 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSH---PTFIYARPL   38 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTC---CEEEEECCC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCC---cEEEEECCc
Confidence            47899999999999999999999986   699999986

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=98.13  E-value=3.2e-06  Score=64.89  Aligned_cols=37  Identities=32%  Similarity=0.643  Sum_probs=30.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHh-CCCc--cEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRA-IPHL--KHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~-~~~~--~~V~~l~R~~  102 (121)
                      |+|+|||||||||++++++|++. ++.+  .+|++++|..
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~   40 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLT   40 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCC
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCC
Confidence            57999999999999999999996 2210  2799999864

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=98.12  E-value=4.2e-06  Score=63.34  Aligned_cols=38  Identities=24%  Similarity=0.309  Sum_probs=34.7

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++++++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus        29 ~l~~k~vlVTGasggIG~~la~~l~~~G~---~V~~~~r~~   66 (279)
T 1xg5_A           29 RWRDRLALVTGASGGIGAAVARALVQQGL---KVVGCARTV   66 (279)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEECCh
Confidence            46889999999999999999999999987   799999974

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=98.11  E-value=3.1e-06  Score=63.76  Aligned_cols=36  Identities=19%  Similarity=0.256  Sum_probs=31.9

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++|+|+||| +||||++++++|++.|+   +|++++|+..
T Consensus         2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~---~V~~~~r~~~   37 (286)
T 3gpi_A            2 SLSKILIAG-CGDLGLELARRLTAQGH---EVTGLRRSAQ   37 (286)
T ss_dssp             CCCCEEEEC-CSHHHHHHHHHHHHTTC---CEEEEECTTS
T ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHCCC---EEEEEeCCcc
Confidence            467999999 59999999999999987   6999999754

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=98.11  E-value=3.9e-06  Score=64.42  Aligned_cols=33  Identities=30%  Similarity=0.510  Sum_probs=29.8

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      |+|+||||+||||++++++|++.|+   +|+++.|.
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~---~V~~~~~~   33 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGH---DVIILDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC---EEEEEecC
Confidence            5799999999999999999999987   78888874

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=98.11  E-value=4.5e-06  Score=61.05  Aligned_cols=36  Identities=22%  Similarity=0.258  Sum_probs=32.7

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~---~V~~~~r~~~   37 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGY---RVVVLDLRRE   37 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC---EEEEEESSCC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEccCcc
Confidence            68999999999999999999999987   7999998754

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=98.11  E-value=3.3e-06  Score=66.71  Aligned_cols=38  Identities=26%  Similarity=0.331  Sum_probs=33.8

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+++|+|||||||||++++++|++.++   +|++++|+...
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~R~~~~   41 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGH---HVRAQVHSLKG   41 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC---CEEEEESCSCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEECCCCh
Confidence            367899999999999999999999886   69999998654

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=98.10  E-value=3.8e-06  Score=64.92  Aligned_cols=34  Identities=21%  Similarity=0.555  Sum_probs=30.3

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHh-CCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRA-IPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~-~~~~~~V~~l~R~~  102 (121)
                      |+|+||||+||||++++++|++. ++   +|++++|..
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~---~V~~~~r~~   35 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQD---TVVNIDKLT   35 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC---EEEEEECCC
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCC---eEEEEecCC
Confidence            57999999999999999999998 55   799999864

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=98.10  E-value=4.3e-06  Score=61.86  Aligned_cols=37  Identities=19%  Similarity=0.216  Sum_probs=34.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         9 ~~~k~vlITGasggiG~~la~~l~~~G~---~V~~~~r~~   45 (254)
T 2wsb_A            9 LDGACAAVTGAGSGIGLEICRAFAASGA---RLILIDREA   45 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999987   799999974

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=98.09  E-value=2.8e-06  Score=63.73  Aligned_cols=36  Identities=17%  Similarity=0.190  Sum_probs=32.3

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .|+|+|||| ||||++++++|++.++   +|++++|+...
T Consensus         5 ~~~ilVtGa-G~iG~~l~~~L~~~g~---~V~~~~r~~~~   40 (286)
T 3ius_A            5 TGTLLSFGH-GYTARVLSRALAPQGW---RIIGTSRNPDQ   40 (286)
T ss_dssp             CCEEEEETC-CHHHHHHHHHHGGGTC---EEEEEESCGGG
T ss_pred             cCcEEEECC-cHHHHHHHHHHHHCCC---EEEEEEcChhh
Confidence            378999998 9999999999999987   79999998644

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=98.09  E-value=2.9e-06  Score=64.87  Aligned_cols=35  Identities=29%  Similarity=0.662  Sum_probs=32.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++|+||||||++|++++++|++.|+   +|++++|+..
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~---~V~~l~R~~~   46 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH---PTYVFTRPNS   46 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC---CEEEEECTTC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC---cEEEEECCCC
Confidence            5899999999999999999999986   6999999865

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=98.09  E-value=2.9e-06  Score=63.99  Aligned_cols=35  Identities=34%  Similarity=0.560  Sum_probs=31.0

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhC-CCccEEEEEecCCCC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAI-PHLKHIYLLVRPKKG  104 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~-~~~~~V~~l~R~~~~  104 (121)
                      +|+|||||||||++++++|++.| +   +|+++.|....
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~---~V~~~~r~~~~   36 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGIT---DILVVDNLKDG   36 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCC---CEEEEECCSSG
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCc---EEEEEccCCCC
Confidence            48999999999999999999998 5   69999997654

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=98.09  E-value=4.4e-06  Score=62.69  Aligned_cols=42  Identities=17%  Similarity=0.243  Sum_probs=35.2

Q ss_pred             chhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          58 PIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        58 ~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +....+++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus        12 ~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~---~V~~~~r~~   53 (249)
T 1o5i_A           12 HMELGIRDKGVLVLAASRGIGRAVADVLSQEGA---EVTICARNE   53 (249)
T ss_dssp             ----CCTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             hHHhccCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            455677899999999999999999999999987   799999974

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=98.09  E-value=4.6e-06  Score=61.87  Aligned_cols=37  Identities=22%  Similarity=0.254  Sum_probs=34.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++|+||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus        11 l~~k~vlItGasggiG~~la~~l~~~G~---~V~~~~r~~   47 (260)
T 3awd_A           11 LDNRVAIVTGGAQNIGLACVTALAEAGA---RVIIADLDE   47 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999987   799999974

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=98.09  E-value=3.1e-06  Score=62.49  Aligned_cols=37  Identities=14%  Similarity=0.120  Sum_probs=34.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         9 ~~~~~vlVtGasggiG~~la~~l~~~G~---~V~~~~r~~   45 (255)
T 1fmc_A            9 LDGKCAIITGAGAGIGKEIAITFATAGA---SVVVSDINA   45 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            5789999999999999999999999987   799999974

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=98.08  E-value=4.9e-06  Score=61.32  Aligned_cols=37  Identities=22%  Similarity=0.261  Sum_probs=33.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++|+||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~~~G~---~V~~~~r~~   41 (244)
T 3d3w_A            5 LAGRRVLVTGAGKGIGRGTVQALHATGA---RVVAVSRTQ   41 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999987   799999974

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=98.06  E-value=2.3e-06  Score=63.26  Aligned_cols=37  Identities=16%  Similarity=0.273  Sum_probs=32.8

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhC-CCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAI-PHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~-~~~~~V~~l~R~~~  103 (121)
                      ..|+|+||||+|+||++++++|++.+ .   +|++++|+..
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~---~V~~~~R~~~   59 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTI---KQTLFARQPA   59 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTE---EEEEEESSGG
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCc---eEEEEEcChh
Confidence            45789999999999999999999998 4   7999999754

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=98.06  E-value=1.7e-05  Score=60.99  Aligned_cols=39  Identities=15%  Similarity=0.278  Sum_probs=35.2

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+++|+++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus        44 ~l~gk~vlVTGas~GIG~aia~~la~~G~---~V~~~~r~~~   82 (291)
T 3ijr_A           44 KLKGKNVLITGGDSGIGRAVSIAFAKEGA---NIAIAYLDEE   82 (291)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCch
Confidence            46899999999999999999999999987   7999998753

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=98.06  E-value=4.3e-06  Score=61.52  Aligned_cols=37  Identities=24%  Similarity=0.302  Sum_probs=33.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         5 ~~~~~vlVtGasggiG~~la~~l~~~G~---~V~~~~r~~   41 (248)
T 2pnf_A            5 LQGKVSLVTGSTRGIGRAIAEKLASAGS---TVIITGTSG   41 (248)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCh
Confidence            5689999999999999999999999987   799999964

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=98.06  E-value=5.6e-06  Score=61.53  Aligned_cols=37  Identities=19%  Similarity=0.197  Sum_probs=33.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++|+||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         5 ~~~k~vlITGasggiG~~la~~l~~~G~---~V~~~~r~~   41 (264)
T 2pd6_A            5 LRSALALVTGAGSGIGRAVSVRLAGEGA---TVAACDLDR   41 (264)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCh
Confidence            5689999999999999999999999987   799999974

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=98.05  E-value=3.6e-06  Score=61.60  Aligned_cols=37  Identities=32%  Similarity=0.373  Sum_probs=33.4

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhC--CCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAI--PHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~--~~~~~V~~l~R~~~  103 (121)
                      ++++|+||||+|+||.+++++|++.+  .   +|+++.|+..
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~---~V~~~~r~~~   40 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIR---HIIATARDVE   40 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCC---EEEEEESSGG
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCc---EEEEEecCHH
Confidence            57899999999999999999999998  5   7999999754

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=98.05  E-value=5.2e-06  Score=64.84  Aligned_cols=38  Identities=29%  Similarity=0.349  Sum_probs=34.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++|+||||+|+||.+++++|++.|+   +|++.+|+..
T Consensus         6 l~~k~vlVTGas~gIG~~la~~l~~~G~---~Vv~~~r~~~   43 (319)
T 3ioy_A            6 FAGRTAFVTGGANGVGIGLVRQLLNQGC---KVAIADIRQD   43 (319)
T ss_dssp             CTTCEEEEETTTSTHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCEEEEcCCchHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            4689999999999999999999999987   7999999753

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=98.04  E-value=5.4e-06  Score=61.30  Aligned_cols=40  Identities=20%  Similarity=0.280  Sum_probs=35.6

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ..+++|+++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus        10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~---~V~~~~r~~~   49 (247)
T 3i1j_A           10 ELLKGRVILVTGAARGIGAAAARAYAAHGA---SVVLLGRTEA   49 (247)
T ss_dssp             TTTTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             ccCCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEecCHH
Confidence            346899999999999999999999999987   7999999743

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=98.04  E-value=5.4e-06  Score=61.27  Aligned_cols=37  Identities=19%  Similarity=0.281  Sum_probs=33.5

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++|+++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~---~V~~~~r~~~   38 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGY---TVLNIDLSAN   38 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTE---EEEEEESSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEecCcc
Confidence            578999999999999999999999987   7999999754

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=98.04  E-value=5.8e-06  Score=59.26  Aligned_cols=33  Identities=18%  Similarity=0.340  Sum_probs=30.0

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+++||||+|+||++++++|+ .|.   +|+++.|+.
T Consensus         4 M~vlVtGasg~iG~~~~~~l~-~g~---~V~~~~r~~   36 (202)
T 3d7l_A            4 MKILLIGASGTLGSAVKERLE-KKA---EVITAGRHS   36 (202)
T ss_dssp             CEEEEETTTSHHHHHHHHHHT-TTS---EEEEEESSS
T ss_pred             cEEEEEcCCcHHHHHHHHHHH-CCC---eEEEEecCc
Confidence            389999999999999999999 876   799999974

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=98.04  E-value=7.3e-06  Score=61.49  Aligned_cols=39  Identities=26%  Similarity=0.382  Sum_probs=34.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+...
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~   42 (256)
T 2d1y_A            4 FAGKGVLVTGGARGIGRAIAQAFAREGA---LVALCDLRPEG   42 (256)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSTTH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCChhH
Confidence            5689999999999999999999999987   79999997643

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=98.03  E-value=6.7e-06  Score=61.82  Aligned_cols=38  Identities=16%  Similarity=0.203  Sum_probs=34.3

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   42 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGA---TVAIADIDI   42 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            35789999999999999999999999987   799999864

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=98.03  E-value=6.6e-06  Score=64.37  Aligned_cols=34  Identities=35%  Similarity=0.643  Sum_probs=30.6

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      |+|+|||||||||++++++|++.++.  +|++++|+
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~--~v~~~d~~   34 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDH--HIFEVHRQ   34 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC--EEEECCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCC--EEEEECCC
Confidence            68999999999999999999999762  79999985

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=98.03  E-value=5.9e-06  Score=70.30  Aligned_cols=40  Identities=23%  Similarity=0.259  Sum_probs=33.1

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ..+++|+|+||||+||||++++++|++.++   +|++++|...
T Consensus         7 ~~~~~~~ilVTGatG~IG~~l~~~L~~~G~---~V~~~~r~~~   46 (699)
T 1z45_A            7 SESTSKIVLVTGGAGYIGSHTVVELIENGY---DCVVADNLSN   46 (699)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSS
T ss_pred             cccCCCEEEEECCCCHHHHHHHHHHHHCcC---EEEEEECCCc
Confidence            346789999999999999999999999986   7999998654

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=98.03  E-value=3.2e-06  Score=63.29  Aligned_cols=29  Identities=28%  Similarity=0.659  Sum_probs=26.3

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIP   90 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~   90 (121)
                      ++++|+|+|||||||||++++++|++.++
T Consensus         3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~   31 (319)
T 4b8w_A            3 YFQSMRILVTGGSGLVGKAIQKVVADGAG   31 (319)
T ss_dssp             CCCCCEEEEETCSSHHHHHHHHHHHTTTC
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhcCC
Confidence            35789999999999999999999999874

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=98.03  E-value=7e-06  Score=62.42  Aligned_cols=38  Identities=24%  Similarity=0.267  Sum_probs=34.6

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++++++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus        23 ~l~~k~vlITGasggiG~~la~~L~~~G~---~V~~~~r~~   60 (302)
T 1w6u_A           23 SFQGKVAFITGGGTGLGKGMTTLLSSLGA---QCVIASRKM   60 (302)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            46789999999999999999999999987   799999974

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=98.03  E-value=7e-06  Score=62.55  Aligned_cols=38  Identities=26%  Similarity=0.421  Sum_probs=34.6

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++++|+||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus        15 ~l~~k~vlVTGasggIG~~la~~l~~~G~---~V~~~~r~~   52 (303)
T 1yxm_A           15 LLQGQVAIVTGGATGIGKAIVKELLELGS---NVVIASRKL   52 (303)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            46789999999999999999999999987   799999974

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=98.02  E-value=4.5e-06  Score=63.10  Aligned_cols=39  Identities=18%  Similarity=0.163  Sum_probs=34.2

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +.+|+++||||+|+||++++++|++.|.   +|+++.|+...
T Consensus         3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~---~V~~~~r~~~~   41 (281)
T 3m1a_A            3 ESAKVWLVTGASSGFGRAIAEAAVAAGD---TVIGTARRTEA   41 (281)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSGGG
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHH
Confidence            3578999999999999999999999987   79999997543

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=98.02  E-value=5.7e-06  Score=61.08  Aligned_cols=37  Identities=19%  Similarity=0.279  Sum_probs=33.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         4 ~~~k~vlVtGasggiG~~~a~~l~~~G~---~V~~~~r~~   40 (251)
T 1zk4_A            4 LDGKVAIITGGTLGIGLAIATKFVEEGA---KVMITGRHS   40 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999987   799999974

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=98.02  E-value=9e-06  Score=61.57  Aligned_cols=37  Identities=24%  Similarity=0.351  Sum_probs=33.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   42 (264)
T 2dtx_A            6 LRDKVVIVTGASMGIGRAIAERFVDEGS---KVIDLSIHD   42 (264)
T ss_dssp             GTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEecCc
Confidence            5789999999999999999999999987   799999864

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=98.01  E-value=8e-06  Score=61.14  Aligned_cols=38  Identities=18%  Similarity=0.308  Sum_probs=34.2

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++++++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus        13 ~l~~k~vlITGasggiG~~~a~~l~~~G~---~V~~~~r~~   50 (278)
T 2bgk_A           13 RLQDKVAIITGGAGGIGETTAKLFVRYGA---KVVIADIAD   50 (278)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cccCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEcCCh
Confidence            35789999999999999999999999987   799998864

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=98.01  E-value=1e-05  Score=59.55  Aligned_cols=37  Identities=24%  Similarity=0.249  Sum_probs=32.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEE-ecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLL-VRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l-~R~~  102 (121)
                      +++++++||||+|+||.+++++|++.|.   +|+++ .|+.
T Consensus         3 l~~~~vlItGasggiG~~~a~~l~~~G~---~V~~~~~r~~   40 (247)
T 2hq1_A            3 LKGKTAIVTGSSRGLGKAIAWKLGNMGA---NIVLNGSPAS   40 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEECTTC
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCcCH
Confidence            4689999999999999999999999987   78888 5554

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=98.01  E-value=5.9e-06  Score=62.43  Aligned_cols=39  Identities=21%  Similarity=0.190  Sum_probs=33.4

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ..++++++||||+|.||.+++++|++.|.   +|++..|+..
T Consensus         9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~---~V~~~~r~~~   47 (311)
T 3o26_A            9 VTKRRCAVVTGGNKGIGFEICKQLSSNGI---MVVLTCRDVT   47 (311)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            45789999999999999999999999987   7999999753

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=98.01  E-value=7.1e-06  Score=62.25  Aligned_cols=42  Identities=21%  Similarity=0.119  Sum_probs=35.4

Q ss_pred             chhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          58 PIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        58 ~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +....+++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus        14 ~~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   55 (267)
T 1vl8_A           14 KEVFDLRGRVALVTGGSRGLGFGIAQGLAEAGC---SVVVASRNL   55 (267)
T ss_dssp             ---CCCTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCcCCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            344457889999999999999999999999987   799999974

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=98.00  E-value=8.2e-06  Score=60.66  Aligned_cols=39  Identities=23%  Similarity=0.247  Sum_probs=34.8

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+++++++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus         6 ~~~~k~vlITGas~giG~~~a~~l~~~G~---~V~~~~r~~~   44 (253)
T 3qiv_A            6 RFENKVGIVTGSGGGIGQAYAEALAREGA---AVVVADINAE   44 (253)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEcCCHH
Confidence            35789999999999999999999999987   7999999743

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=98.00  E-value=9.5e-06  Score=60.82  Aligned_cols=39  Identities=15%  Similarity=0.184  Sum_probs=33.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +.+|+|+||||+|+||.+++++|++.|.   +|+++.|+...
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~---~V~~~~r~~~~   58 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSW---NTISIDFRENP   58 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCCT
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCccc
Confidence            3478999999999999999999999987   79999997643

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=98.00  E-value=8.2e-06  Score=61.21  Aligned_cols=37  Identities=19%  Similarity=0.211  Sum_probs=33.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   46 (263)
T 3ak4_A           10 LSGRKAIVTGGSKGIGAAIARALDKAGA---TVAIADLDV   46 (263)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            4689999999999999999999999987   799999864

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=98.00  E-value=9.2e-06  Score=60.32  Aligned_cols=38  Identities=18%  Similarity=0.138  Sum_probs=33.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .++|+++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~   42 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNW---WVASIDVVEN   42 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTC---EEEEEESSCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCC---EEEEEeCChh
Confidence            4678999999999999999999999987   7999999753

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=98.00  E-value=3.3e-06  Score=63.13  Aligned_cols=35  Identities=29%  Similarity=0.544  Sum_probs=30.9

Q ss_pred             eEEEEcCCChHHHHHHHHHHHh--CCCccEEEEEecCCCC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRA--IPHLKHIYLLVRPKKG  104 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~--~~~~~~V~~l~R~~~~  104 (121)
                      +|+|||||||||++++++|++.  ++   +|++++|+...
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~---~V~~~~r~~~~   37 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS---QIVAIVRNPAK   37 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG---GEEEEESCTTT
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc---eEEEEEcChHh
Confidence            4899999999999999999998  65   69999997654

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=98.00  E-value=1.6e-06  Score=64.90  Aligned_cols=35  Identities=20%  Similarity=0.172  Sum_probs=31.7

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++|+|||||||||++++++|++.++   +|++++|+..
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~   37 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAH---EVRLSDIVDL   37 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEE---EEEECCSSCC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCC---EEEEEeCCCc
Confidence            5899999999999999999999875   7999999754

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=98.00  E-value=6.7e-06  Score=60.85  Aligned_cols=36  Identities=28%  Similarity=0.290  Sum_probs=32.7

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHH-hCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLR-AIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~-~~~~~~~V~~l~R~~  102 (121)
                      ++++|+||||+|+||.+++++|++ .|.   +|+++.|+.
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~---~V~~~~r~~   39 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG---DVVLTARDV   39 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS---EEEEEESSH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC---eEEEEeCCh
Confidence            578999999999999999999999 776   799999974

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.99  E-value=9e-06  Score=61.01  Aligned_cols=37  Identities=22%  Similarity=0.339  Sum_probs=33.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   41 (263)
T 3ai3_A            5 ISGKVAVITGSSSGIGLAIAEGFAKEGA---HIVLVARQV   41 (263)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            5689999999999999999999999987   799999974

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=97.99  E-value=6.5e-06  Score=61.40  Aligned_cols=36  Identities=14%  Similarity=0.110  Sum_probs=33.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +++++|+||||+|+||.+++++|++.|.   +|+++.|.
T Consensus        19 ~~~k~vlItGasggiG~~la~~l~~~G~---~v~~~~r~   54 (274)
T 1ja9_A           19 LAGKVALTTGAGRGIGRGIAIELGRRGA---SVVVNYGS   54 (274)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCC
Confidence            5789999999999999999999999987   79999983

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=97.99  E-value=8.2e-06  Score=62.00  Aligned_cols=39  Identities=28%  Similarity=0.387  Sum_probs=35.0

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+++|+++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~   46 (281)
T 3svt_A            8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA---SVMIVGRNPD   46 (281)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CcCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            46789999999999999999999999987   7999999743

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.99  E-value=1.9e-05  Score=59.95  Aligned_cols=40  Identities=23%  Similarity=0.249  Sum_probs=36.1

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+++|+++||||+|+||.+++++|++.|.   +|+++.|+...
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~~   47 (271)
T 3tzq_B            8 ELENKVAIITGACGGIGLETSRVLARAGA---RVVLADLPETD   47 (271)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECTTSC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEcCCHHH
Confidence            46789999999999999999999999987   79999998654

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.99  E-value=9.4e-06  Score=60.90  Aligned_cols=37  Identities=27%  Similarity=0.397  Sum_probs=33.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         7 l~~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~~r~~   43 (260)
T 2ae2_A            7 LEGCTALVTGGSRGIGYGIVEELASLGA---SVYTCSRNQ   43 (260)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999987   799999974

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.99  E-value=9.1e-06  Score=62.04  Aligned_cols=37  Identities=24%  Similarity=0.420  Sum_probs=34.2

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus        14 l~gk~vlVTGas~gIG~~~a~~L~~~G~---~V~~~~r~~   50 (291)
T 3rd5_A           14 FAQRTVVITGANSGLGAVTARELARRGA---TVIMAVRDT   50 (291)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEECCH
Confidence            5789999999999999999999999987   799999974

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=97.98  E-value=7.4e-06  Score=61.74  Aligned_cols=39  Identities=18%  Similarity=0.245  Sum_probs=35.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++++++||||+|+||.+++++|++.|.   +|+++.|+...
T Consensus        32 l~~k~vlITGasggIG~~la~~L~~~G~---~V~~~~r~~~~   70 (279)
T 3ctm_A           32 LKGKVASVTGSSGGIGWAVAEAYAQAGA---DVAIWYNSHPA   70 (279)
T ss_dssp             CTTCEEEETTTTSSHHHHHHHHHHHHTC---EEEEEESSSCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHHH
Confidence            6789999999999999999999999987   79999997654

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=97.98  E-value=1e-05  Score=59.63  Aligned_cols=35  Identities=17%  Similarity=0.150  Sum_probs=32.2

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~---~V~~~~r~~   36 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGD---RVAALDLSA   36 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            68999999999999999999999987   799999974

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.98  E-value=9.5e-06  Score=61.38  Aligned_cols=37  Identities=16%  Similarity=0.215  Sum_probs=34.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~G~---~V~~~~r~~   65 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKLKS---KLVLWDINK   65 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEEcCH
Confidence            5789999999999999999999999987   799999974

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=97.98  E-value=7.2e-06  Score=61.26  Aligned_cols=37  Identities=30%  Similarity=0.375  Sum_probs=33.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++|+||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus        12 l~~k~vlITGasggiG~~la~~l~~~G~---~V~~~~r~~   48 (266)
T 1xq1_A           12 LKAKTVLVTGGTKGIGHAIVEEFAGFGA---VIHTCARNE   48 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999987   799999974

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=97.98  E-value=5.3e-06  Score=61.56  Aligned_cols=33  Identities=18%  Similarity=0.266  Sum_probs=29.3

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+|+|||||||||++++++|++ ++   +|++++|+.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~-g~---~V~~~~r~~   33 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE-RH---EVIKVYNSS   33 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT-TS---CEEEEESSS
T ss_pred             CEEEEECCCChhHHHHHHHHhc-CC---eEEEecCCC
Confidence            5799999999999999999995 65   699999975

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=97.98  E-value=7.6e-06  Score=61.59  Aligned_cols=39  Identities=21%  Similarity=0.204  Sum_probs=34.9

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+++++++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~---~V~~~~r~~~   64 (262)
T 3rkr_A           26 SLSGQVAVVTGASRGIGAAIARKLGSLGA---RVVLTARDVE   64 (262)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            36789999999999999999999999987   7999999753

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.97  E-value=1e-05  Score=60.86  Aligned_cols=37  Identities=22%  Similarity=0.235  Sum_probs=33.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   41 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGA---KVALVDWNL   41 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCC---EEEEEECCH
Confidence            5789999999999999999999999987   799999974

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.97  E-value=9.6e-06  Score=58.99  Aligned_cols=35  Identities=29%  Similarity=0.328  Sum_probs=31.3

Q ss_pred             CeEEEEcCCChHHHHHHHHHH-HhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLL-RAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll-~~~~~~~~V~~l~R~~~  103 (121)
                      ++|+||||+|+||++++++|+ +.+.   +|+++.|++.
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~---~V~~~~r~~~   41 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM---HITLYGRQLK   41 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC---EEEEEESSHH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc---eEEEEecCcc
Confidence            569999999999999999999 7776   7999999754

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=97.97  E-value=9.8e-06  Score=61.36  Aligned_cols=39  Identities=21%  Similarity=0.123  Sum_probs=35.0

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+++|+++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus        25 ~~~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~   63 (260)
T 3un1_A           25 RNQQKVVVITGASQGIGAGLVRAYRDRNY---RVVATSRSIK   63 (260)
T ss_dssp             HTTCCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESSCC
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCChh
Confidence            36789999999999999999999999987   7999999754

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=97.97  E-value=7.8e-06  Score=60.78  Aligned_cols=36  Identities=17%  Similarity=0.237  Sum_probs=33.1

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      .+++++|+||||+|+||.+++++|++.|.   +|+++.|
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~---~V~~~~r   39 (261)
T 1gee_A            4 DLEGKVVVITGSSTGLGKSMAIRFATEKA---KVVVNYR   39 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEES
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEcC
Confidence            35789999999999999999999999987   7999999

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.97  E-value=1.2e-05  Score=60.33  Aligned_cols=40  Identities=23%  Similarity=0.335  Sum_probs=35.8

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ..+++|+++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus         8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~   47 (252)
T 3f1l_A            8 DLLNDRIILVTGASDGIGREAAMTYARYGA---TVILLGRNEE   47 (252)
T ss_dssp             TTTTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            357899999999999999999999999987   7999999743

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=97.97  E-value=1.2e-05  Score=60.12  Aligned_cols=37  Identities=19%  Similarity=0.175  Sum_probs=33.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         5 l~~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~~r~~   41 (250)
T 2fwm_X            5 FSGKNVWVTGAGKGIGYATALAFVEAGA---KVTGFDQAF   41 (250)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCch
Confidence            5689999999999999999999999987   799999874

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.97  E-value=1.2e-05  Score=60.29  Aligned_cols=39  Identities=15%  Similarity=0.169  Sum_probs=34.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+...
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~~   43 (257)
T 3tpc_A            5 LKSRVFIVTGASSGLGAAVTRMLAQEGA---TVLGLDLKPPA   43 (257)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESSCC-
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCChHH
Confidence            5789999999999999999999999987   79999997654

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=97.97  E-value=8.6e-06  Score=61.96  Aligned_cols=43  Identities=28%  Similarity=0.335  Sum_probs=35.7

Q ss_pred             chhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          58 PIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        58 ~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +....+++|+|+||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus         7 ~~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~---~V~~~~r~~~   49 (269)
T 3vtz_A            7 HHMEEFTDKVAIVTGGSSGIGLAVVDALVRYGA---KVVSVSLDEK   49 (269)
T ss_dssp             ---CTTTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCC-
T ss_pred             ccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCch
Confidence            345567899999999999999999999999987   7999988653

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.97  E-value=8.5e-06  Score=60.98  Aligned_cols=38  Identities=26%  Similarity=0.235  Sum_probs=34.2

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~~r~~~   39 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGA---NIVLNGFGDP   39 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEECSSCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCch
Confidence            4689999999999999999999999987   7999999764

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=97.96  E-value=1.3e-05  Score=60.24  Aligned_cols=39  Identities=21%  Similarity=0.261  Sum_probs=35.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++++++||||+|.||.+++++|++.|.   +|+++.|+...
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~~~G~---~V~~~~r~~~~   43 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFAAEGF---TVFAGRRNGEK   43 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHHHTTC---EEEEEESSGGG
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHHH
Confidence            5789999999999999999999999987   79999997654

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.96  E-value=6.7e-06  Score=60.99  Aligned_cols=39  Identities=10%  Similarity=0.137  Sum_probs=35.2

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ..+++++|+||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus        10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~---~V~~~~r~~   48 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGSAIARLLHKLGS---KVIISGSNE   48 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            356889999999999999999999999987   799999964

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=97.96  E-value=1.1e-05  Score=60.96  Aligned_cols=37  Identities=19%  Similarity=0.347  Sum_probs=33.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+|+||||+|+||.+++++|++.|.   +|+++.|..
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~---~V~~~~r~~   63 (271)
T 4iin_A           27 FTGKNVLITGASKGIGAEIAKTLASMGL---KVWINYRSN   63 (271)
T ss_dssp             CSCCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCC
Confidence            5789999999999999999999999987   799999953

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=97.96  E-value=1.2e-05  Score=60.04  Aligned_cols=37  Identities=19%  Similarity=0.297  Sum_probs=34.2

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   41 (249)
T 2ew8_A            5 LKDKLAVITGGANGIGRAIAERFAVEGA---DIAIADLVP   41 (249)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEcCCc
Confidence            5789999999999999999999999987   799999976

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=97.96  E-value=9.4e-06  Score=60.79  Aligned_cols=38  Identities=18%  Similarity=0.265  Sum_probs=34.5

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus        11 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   48 (260)
T 2zat_A           11 PLENKVALVTASTDGIGLAIARRLAQDGA---HVVVSSRKQ   48 (260)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            35789999999999999999999999987   799999974

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=97.95  E-value=1.1e-05  Score=61.13  Aligned_cols=39  Identities=18%  Similarity=0.295  Sum_probs=33.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+...
T Consensus        25 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~~   63 (260)
T 3gem_A           25 LSSAPILITGASQRVGLHCALRLLEHGH---RVIISYRTEHA   63 (260)
T ss_dssp             --CCCEEESSTTSHHHHHHHHHHHHTTC---CEEEEESSCCH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCChHH
Confidence            6789999999999999999999999987   69999998643

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=97.95  E-value=9.9e-06  Score=60.56  Aligned_cols=38  Identities=26%  Similarity=0.333  Sum_probs=34.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus        13 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~   50 (247)
T 1uzm_A           13 FVSRSVLVTGGNRGIGLAIAQRLAADGH---KVAVTHRGSG   50 (247)
T ss_dssp             CCCCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCChH
Confidence            5789999999999999999999999987   7999999753

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=97.95  E-value=1.2e-05  Score=60.66  Aligned_cols=37  Identities=16%  Similarity=0.166  Sum_probs=33.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   41 (260)
T 1nff_A            5 LTGKVALVSGGARGMGASHVRAMVAEGA---KVVFGDILD   41 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999987   799999974

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.95  E-value=1.4e-05  Score=61.05  Aligned_cols=39  Identities=15%  Similarity=0.216  Sum_probs=35.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+...
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~~   68 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYAEAGA---QVAVAARHSDA   68 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESSGGG
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCHHH
Confidence            5789999999999999999999999987   79999997544

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.95  E-value=1.4e-05  Score=59.90  Aligned_cols=38  Identities=11%  Similarity=0.115  Sum_probs=34.2

Q ss_pred             hcCCeEEEEcCCCh--HHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGF--MGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGf--IGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++|+++||||+|+  ||.+++++|++.|.   +|+++.|+..
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~---~V~~~~r~~~   44 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA---RLIFTYAGER   44 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHTTC---EEEEEESSGG
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC---EEEEecCchH
Confidence            57899999999999  99999999999987   7999998743

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=97.95  E-value=5.6e-06  Score=62.86  Aligned_cols=33  Identities=24%  Similarity=0.286  Sum_probs=29.1

Q ss_pred             eEEEEcCCChHHHHHHHHHHHh--CCCccEEEEEecCC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRA--IPHLKHIYLLVRPK  102 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~--~~~~~~V~~l~R~~  102 (121)
                      +|+||||+||||++++++|++.  ++   +|++++|..
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~---~V~~~~r~~   35 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKK---NVIASDIVQ   35 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGG---GEEEEESSC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCC---EEEEecCCC
Confidence            4899999999999999999998  55   688888864

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=97.95  E-value=1e-05  Score=59.32  Aligned_cols=36  Identities=19%  Similarity=0.240  Sum_probs=32.6

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+||||+|+||++++++|++.|+   +|+++.|+.
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~---~V~~~~r~~   39 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGY---RVGLMARDE   39 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            467899999999999999999999987   799999964

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=97.95  E-value=1.2e-05  Score=61.16  Aligned_cols=39  Identities=23%  Similarity=0.395  Sum_probs=35.2

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+++++|+||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus        25 ~~~~k~vlITGasggIG~~la~~l~~~G~---~V~~~~r~~~   63 (286)
T 1xu9_A           25 MLQGKKVIVTGASKGIGREMAYHLAKMGA---HVVVTARSKE   63 (286)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             hcCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            46889999999999999999999999987   7999999743

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.94  E-value=1.3e-05  Score=58.99  Aligned_cols=37  Identities=19%  Similarity=0.178  Sum_probs=33.1

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++|+++||||+|+||.+++++|++.|.   +|++..|+..
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l~~~G~---~V~~~~r~~~   37 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARALARDGY---ALALGARSVD   37 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            368999999999999999999999987   7999999753

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.94  E-value=1.2e-05  Score=60.23  Aligned_cols=37  Identities=22%  Similarity=0.268  Sum_probs=33.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   41 (260)
T 2z1n_A            5 IQGKLAVVTAGSSGLGFASALELARNGA---RLLLFSRNR   41 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5689999999999999999999999987   799999974

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.94  E-value=1.1e-05  Score=59.79  Aligned_cols=38  Identities=13%  Similarity=0.128  Sum_probs=34.2

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~---~v~~~~r~~~   40 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGA---TVVGTATSQA   40 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESSHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            4689999999999999999999999987   7999999743

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=97.93  E-value=1.1e-05  Score=60.09  Aligned_cols=39  Identities=15%  Similarity=0.223  Sum_probs=34.2

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++|+++||||+|+||.+++++|++.|..  .|+++.|+..
T Consensus         3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~--~v~~~~r~~~   41 (254)
T 1sby_A            3 LTNKNVIFVAALGGIGLDTSRELVKRNLK--NFVILDRVEN   41 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCS--EEEEEESSCC
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCc--EEEEEecCch
Confidence            46899999999999999999999999873  4888999753

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.93  E-value=1.1e-05  Score=59.97  Aligned_cols=37  Identities=8%  Similarity=0.061  Sum_probs=33.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   40 (246)
T 2ag5_A            4 LDGKVIILTAAAQGIGQAAALAFAREGA---KVIATDINE   40 (246)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            5789999999999999999999999987   799999863

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.93  E-value=1.2e-05  Score=62.00  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=34.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~---~V~~~~r~~~   66 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA---RLVLSDVDQP   66 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            6789999999999999999999999987   7999999753

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.93  E-value=1.3e-05  Score=60.55  Aligned_cols=40  Identities=18%  Similarity=0.245  Sum_probs=35.4

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ...+++|+++||||+|.||.+++++|++.|.   +|++..|+.
T Consensus         6 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~   45 (264)
T 3ucx_A            6 GGLLTDKVVVISGVGPALGTTLARRCAEQGA---DLVLAARTV   45 (264)
T ss_dssp             -CTTTTCEEEEESCCTTHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCcCCcEEEEECCCcHHHHHHHHHHHHCcC---EEEEEeCCH
Confidence            3457899999999999999999999999987   799999974

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=97.92  E-value=1.7e-05  Score=59.96  Aligned_cols=39  Identities=23%  Similarity=0.260  Sum_probs=33.8

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+++|+++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus        18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~   56 (253)
T 2nm0_A           18 SHMSRSVLVTGGNRGIGLAIARAFADAGD---KVAITYRSGE   56 (253)
T ss_dssp             --CCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCChH
Confidence            46789999999999999999999999987   7999999754

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.91  E-value=1e-05  Score=61.05  Aligned_cols=38  Identities=29%  Similarity=0.355  Sum_probs=34.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus         8 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~   45 (262)
T 3pk0_A            8 LQGRSVVVTGGTKGIGRGIATVFARAGA---NVAVAGRSTA   45 (262)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            5789999999999999999999999987   7999999743

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.91  E-value=1.5e-05  Score=59.76  Aligned_cols=37  Identities=19%  Similarity=0.223  Sum_probs=33.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   39 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGA---RVVLADVLD   39 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999987   799999864

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.91  E-value=1.2e-05  Score=60.75  Aligned_cols=37  Identities=16%  Similarity=0.258  Sum_probs=33.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   40 (278)
T 1spx_A            4 FAEKVAIITGSSNGIGRATAVLFAREGA---KVTITGRHA   40 (278)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999987   799999974

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.91  E-value=1e-05  Score=60.78  Aligned_cols=39  Identities=23%  Similarity=0.408  Sum_probs=34.9

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+++|+++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~   41 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGA---RVVITGRTKE   41 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            46789999999999999999999999987   7999999743

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=97.91  E-value=1.3e-05  Score=62.01  Aligned_cols=40  Identities=28%  Similarity=0.340  Sum_probs=35.7

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+++|+++||||+|+||.+++++|++.|.   +|+++.|+...
T Consensus        38 ~l~~k~vlVTGas~GIG~aia~~la~~G~---~V~~~~r~~~~   77 (293)
T 3rih_A           38 DLSARSVLVTGGTKGIGRGIATVFARAGA---NVAVAARSPRE   77 (293)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSGGG
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHHH
Confidence            35789999999999999999999999987   79999997644

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=97.91  E-value=1.7e-05  Score=58.86  Aligned_cols=35  Identities=14%  Similarity=0.040  Sum_probs=31.9

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~---~V~~~~r~~~   36 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH---QIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCch
Confidence            5799999999999999999999987   7999999764

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=97.91  E-value=1.3e-05  Score=60.60  Aligned_cols=38  Identities=26%  Similarity=0.327  Sum_probs=34.7

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++++++||||+|.||.+++++|++.|.   +|+++.|+.
T Consensus        27 ~l~~k~vlVTGas~GIG~aia~~l~~~G~---~Vi~~~r~~   64 (281)
T 3ppi_A           27 QFEGASAIVSGGAGGLGEATVRRLHADGL---GVVIADLAA   64 (281)
T ss_dssp             GGTTEEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCh
Confidence            46889999999999999999999999987   799999974

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.90  E-value=1.7e-05  Score=59.25  Aligned_cols=37  Identities=16%  Similarity=0.267  Sum_probs=33.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|.||.+++++|++.|.   +|+++.|+.
T Consensus         3 l~~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~~r~~   39 (245)
T 1uls_A            3 LKDKAVLITGAAHGIGRATLELFAKEGA---RLVACDIEE   39 (245)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            4689999999999999999999999987   799999864

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.90  E-value=1.6e-05  Score=59.91  Aligned_cols=37  Identities=30%  Similarity=0.244  Sum_probs=34.0

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+++|+++||||+|.||.+++++|++.|.   +|+++.|+
T Consensus         7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~~~   43 (287)
T 3pxx_A            7 RVQDKVVLVTGGARGQGRSHAVKLAEEGA---DIILFDIC   43 (287)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCC---eEEEEccc
Confidence            36789999999999999999999999987   79999886

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.90  E-value=1.7e-05  Score=59.75  Aligned_cols=37  Identities=24%  Similarity=0.362  Sum_probs=34.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|.||.+++++|++.|.   +|+++.|+.
T Consensus        11 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   47 (267)
T 1iy8_A           11 FTDRVVLITGGGSGLGRATAVRLAAEGA---KLSLVDVSS   47 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999987   799999974

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.90  E-value=1.7e-05  Score=59.28  Aligned_cols=37  Identities=14%  Similarity=0.217  Sum_probs=34.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|.||.+++++|++.|.   +|+++.|+.
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~---~V~~~~r~~   41 (247)
T 2jah_A            5 LQGKVALITGASSGIGEATARALAAEGA---AVAIAARRV   41 (247)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            5789999999999999999999999987   799999974

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.89  E-value=1.6e-05  Score=59.68  Aligned_cols=38  Identities=18%  Similarity=0.298  Sum_probs=34.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus         5 ~~~k~~lVTGas~GIG~aia~~l~~~G~---~V~~~~r~~~   42 (250)
T 3nyw_A            5 KQKGLAIITGASQGIGAVIAAGLATDGY---RVVLIARSKQ   42 (250)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHHTC---EEEEEESCHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            5789999999999999999999999987   7999999753

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.89  E-value=1.7e-05  Score=60.28  Aligned_cols=37  Identities=19%  Similarity=0.260  Sum_probs=34.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus        20 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   56 (277)
T 2rhc_B           20 QDSEVALVTGATSGIGLEIARRLGKEGL---RVFVCARGE   56 (277)
T ss_dssp             TTSCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            6789999999999999999999999987   799999974

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=97.89  E-value=1.8e-05  Score=58.62  Aligned_cols=36  Identities=22%  Similarity=0.365  Sum_probs=32.7

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +|+++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~---~V~~~~r~~~   37 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGY---RVAIASRNPE   37 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            68999999999999999999999987   7999999753

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.89  E-value=1.8e-05  Score=59.01  Aligned_cols=38  Identities=13%  Similarity=0.288  Sum_probs=34.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus         7 l~~k~vlITGas~gIG~~~a~~l~~~G~---~V~~~~r~~~   44 (261)
T 3n74_A            7 LEGKVALITGAGSGFGEGMAKRFAKGGA---KVVIVDRDKA   44 (261)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCCHH
Confidence            5789999999999999999999999987   7999999753

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=97.89  E-value=8.6e-06  Score=61.95  Aligned_cols=33  Identities=30%  Similarity=0.489  Sum_probs=26.0

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      |+|+|||||||||++++++|++.|.   .|.+..|+
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~---~v~~~~~~   34 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSESNE---IVVIDNLS   34 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTTSC---EEEECCCS
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCC---EEEEEcCC
Confidence            5799999999999999999999873   44444343

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.89  E-value=1.3e-05  Score=60.21  Aligned_cols=38  Identities=21%  Similarity=0.118  Sum_probs=34.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~   39 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGA---DIVLNGFGDA   39 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEECCSCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCC---EEEEEeCCcc
Confidence            4689999999999999999999999987   7999998753

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.88  E-value=1.3e-05  Score=60.08  Aligned_cols=37  Identities=22%  Similarity=0.237  Sum_probs=33.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         4 l~~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~~r~~   40 (253)
T 1hxh_A            4 LQGKVALVTGGASGVGLEVVKLLLGEGA---KVAFSDINE   40 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999987   799999864

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.88  E-value=1.3e-05  Score=60.59  Aligned_cols=39  Identities=21%  Similarity=0.330  Sum_probs=34.9

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+++|+++||||+|.||.+++++|++.|.   +|++..|+..
T Consensus         7 ~l~~k~~lVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~   45 (267)
T 3t4x_A            7 QLKGKTALVTGSTAGIGKAIATSLVAEGA---NVLINGRREE   45 (267)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            35789999999999999999999999987   7999999743

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.88  E-value=1.6e-05  Score=60.60  Aligned_cols=41  Identities=24%  Similarity=0.261  Sum_probs=32.2

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ...+++|+++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus        19 ~~m~~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~   59 (279)
T 3sju_A           19 SHMSRPQTAFVTGVSSGIGLAVARTLAARGI---AVYGCARDAK   59 (279)
T ss_dssp             ------CEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             ccccCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            3456789999999999999999999999987   7999999743

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.87  E-value=2e-05  Score=59.23  Aligned_cols=37  Identities=27%  Similarity=0.302  Sum_probs=33.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   41 (262)
T 1zem_A            5 FNGKVCLVTGAGGNIGLATALRLAEEGT---AIALLDMNR   41 (262)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999987   799999974

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.87  E-value=1.8e-05  Score=59.31  Aligned_cols=38  Identities=16%  Similarity=0.168  Sum_probs=34.5

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+++||||+|.||.+++++|++.|.   +|+++.|+.
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~---~V~~~~r~~   40 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGA---TVIVSDINA   40 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            36789999999999999999999999987   799998874

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.87  E-value=2.3e-05  Score=59.83  Aligned_cols=40  Identities=25%  Similarity=0.247  Sum_probs=36.1

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+++|+++||||+|.||.+++++|++.|.   +|++..|+...
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~~   69 (275)
T 4imr_A           30 GLRGRTALVTGSSRGIGAAIAEGLAGAGA---HVILHGVKPGS   69 (275)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSTTT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEcCCHHH
Confidence            36789999999999999999999999987   79999997654

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.87  E-value=2e-05  Score=59.69  Aligned_cols=37  Identities=16%  Similarity=0.317  Sum_probs=33.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         4 l~~k~vlITGas~gIG~aia~~l~~~G~---~V~~~~r~~   40 (263)
T 2a4k_A            4 LSGKTILVTGAASGIGRAALDLFAREGA---SLVAVDREE   40 (263)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999987   799999974

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=97.87  E-value=2e-05  Score=58.66  Aligned_cols=37  Identities=19%  Similarity=0.242  Sum_probs=32.9

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+|+++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G~---~V~~~~r~~~   38 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERGH---QVSMMGRRYQ   38 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            468999999999999999999999987   7999999743

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.86  E-value=2.1e-05  Score=59.63  Aligned_cols=37  Identities=27%  Similarity=0.448  Sum_probs=34.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus        19 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~   55 (273)
T 1ae1_A           19 LKGTTALVTGGSKGIGYAIVEELAGLGA---RVYTCSRNE   55 (273)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999987   799999974

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=97.86  E-value=1.8e-05  Score=58.97  Aligned_cols=41  Identities=10%  Similarity=0.045  Sum_probs=36.0

Q ss_pred             hhhhhcCCeEEEEcCC--ChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          59 IQEFFRDASVFVTGGT--GFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        59 i~~~~~~~~VlVTGat--GfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ....+++|+|+||||+  |.||.+++++|++.|.   +|+++.|+.
T Consensus         8 ~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~---~V~~~~r~~   50 (271)
T 3ek2_A            8 HMGFLDGKRILLTGLLSNRSIAYGIAKACKREGA---ELAFTYVGD   50 (271)
T ss_dssp             -CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC---EEEEEESSG
T ss_pred             CccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC---CEEEEecch
Confidence            4456789999999999  9999999999999987   799999974

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=97.86  E-value=1.8e-05  Score=60.15  Aligned_cols=40  Identities=28%  Similarity=0.425  Sum_probs=35.7

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ..+++|+++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus        23 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~---~V~~~~r~~~   62 (277)
T 4fc7_A           23 DLLRDKVAFITGGGSGIGFRIAEIFMRHGC---HTVIASRSLP   62 (277)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHTTTC---EEEEEESCHH
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            347899999999999999999999999987   7999999743

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.86  E-value=2.2e-05  Score=59.30  Aligned_cols=37  Identities=16%  Similarity=0.103  Sum_probs=34.1

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+++|+++||||+|+||.+++++|++.|.   +|+++.|+
T Consensus        10 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~   46 (278)
T 3sx2_A           10 PLTGKVAFITGAARGQGRAHAVRLAADGA---DIIAVDLC   46 (278)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC---eEEEEecc
Confidence            46889999999999999999999999987   79999886

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=97.85  E-value=2.3e-05  Score=59.53  Aligned_cols=37  Identities=19%  Similarity=0.309  Sum_probs=33.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         7 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   43 (270)
T 1yde_A            7 YAGKVVVVTGGGRGIGAGIVRAFVNSGA---RVVICDKDE   43 (270)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999987   799999864

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.85  E-value=2.3e-05  Score=58.99  Aligned_cols=38  Identities=26%  Similarity=0.351  Sum_probs=34.6

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+++||||+|.||.+++++|++.|.   +|++..|+.
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~---~V~~~~r~~   42 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGA---EVLLTGRNE   42 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            36789999999999999999999999987   799999974

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=97.85  E-value=2.1e-05  Score=60.05  Aligned_cols=37  Identities=22%  Similarity=0.306  Sum_probs=33.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|.||.+++++|++.|.   +|+++.|..
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~   65 (273)
T 3uf0_A           29 LAGRTAVVTGAGSGIGRAIAHGYARAGA---HVLAWGRTD   65 (273)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESST
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEcCHH
Confidence            5789999999999999999999999987   788888763

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=97.85  E-value=1.5e-05  Score=60.61  Aligned_cols=39  Identities=26%  Similarity=0.270  Sum_probs=34.5

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+++|+++||||+|+||.+++++|++.|.   +|++..|+..
T Consensus        25 ~l~gk~vlVTGas~gIG~aia~~la~~G~---~V~~~~r~~~   63 (266)
T 3uxy_A           25 GFEGKVALVTGAAGGIGGAVVTALRAAGA---RVAVADRAVA   63 (266)
T ss_dssp             -CTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEECSSCCT
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            36789999999999999999999999987   7999998643

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=97.85  E-value=2.2e-05  Score=58.49  Aligned_cols=36  Identities=17%  Similarity=0.113  Sum_probs=32.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +.+|+++||||+|+||.+++++|++.|.   +|++..|.
T Consensus         2 l~~k~~lVTGas~gIG~~ia~~l~~~G~---~V~~~~~~   37 (246)
T 3osu_A            2 KMTKSALVTGASRGIGRSIALQLAEEGY---NVAVNYAG   37 (246)
T ss_dssp             CCSCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCC
Confidence            4678999999999999999999999987   68887774

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.85  E-value=2e-05  Score=60.11  Aligned_cols=37  Identities=24%  Similarity=0.475  Sum_probs=33.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus        27 l~~k~vlVTGas~gIG~aia~~L~~~G~---~V~~~~r~~   63 (276)
T 2b4q_A           27 LAGRIALVTGGSRGIGQMIAQGLLEAGA---RVFICARDA   63 (276)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999987   799999874

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=97.85  E-value=1.2e-05  Score=61.31  Aligned_cols=38  Identities=21%  Similarity=0.204  Sum_probs=34.5

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus        23 ~l~gk~~lVTGas~gIG~aia~~la~~G~---~V~~~~r~~   60 (271)
T 4ibo_A           23 DLGGRTALVTGSSRGLGRAMAEGLAVAGA---RILINGTDP   60 (271)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEECCSCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            36789999999999999999999999987   799988864

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.85  E-value=1.8e-05  Score=60.13  Aligned_cols=37  Identities=16%  Similarity=0.298  Sum_probs=34.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   40 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFAQEGA---NVTITGRSS   40 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999987   799999974

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=97.84  E-value=1.9e-05  Score=59.21  Aligned_cols=37  Identities=22%  Similarity=0.288  Sum_probs=33.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   39 (260)
T 2qq5_A            3 MNGQVCVVTGASRGIGRGIALQLCKAGA---TVYITGRHL   39 (260)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5689999999999999999999999987   799999874

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=97.84  E-value=1.6e-05  Score=60.14  Aligned_cols=38  Identities=18%  Similarity=0.192  Sum_probs=34.6

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++|+++||||+|.||.+++++|++.|.   +|++..|+..
T Consensus        18 l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~~   55 (266)
T 4egf_A           18 LDGKRALITGATKGIGADIARAFAAAGA---RLVLSGRDVS   55 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            6789999999999999999999999987   7999999743

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=97.84  E-value=2.4e-05  Score=59.28  Aligned_cols=38  Identities=26%  Similarity=0.281  Sum_probs=34.5

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         7 ~l~~k~~lVTGas~gIG~a~a~~l~~~G~---~V~~~~r~~   44 (281)
T 3s55_A            7 DFEGKTALITGGARGMGRSHAVALAEAGA---DIAICDRCE   44 (281)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCS
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC---eEEEEeCCc
Confidence            36789999999999999999999999987   799999963

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=97.84  E-value=2.7e-05  Score=58.49  Aligned_cols=38  Identities=21%  Similarity=0.249  Sum_probs=34.3

Q ss_pred             hcCCeEEEEcCC--ChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGT--GFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGat--GfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++|+++||||+  |+||.+++++|++.|.   +|+++.|+..
T Consensus         6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~---~V~~~~r~~~   45 (261)
T 2wyu_A            6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGA---EVALSYQAER   45 (261)
T ss_dssp             CTTCEEEEESCCSSSSHHHHHHHHHHHHTC---EEEEEESCGG
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCC---EEEEEcCCHH
Confidence            578999999999  9999999999999987   7999999753

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=97.84  E-value=1.7e-05  Score=59.02  Aligned_cols=35  Identities=14%  Similarity=0.258  Sum_probs=32.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~---~V~~~~r   36 (246)
T 2uvd_A            2 LKGKVALVTGASRGIGRAIAIDLAKQGA---NVVVNYA   36 (246)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeC
Confidence            4689999999999999999999999987   7888888

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=97.84  E-value=1.8e-05  Score=59.64  Aligned_cols=38  Identities=16%  Similarity=0.206  Sum_probs=32.4

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec-CC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR-PK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R-~~  102 (121)
                      .+++++++||||+|+||.+++++|++.|.   +|+++.| +.
T Consensus         8 ~~~~k~~lVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~   46 (276)
T 1mxh_A            8 ASECPAAVITGGARRIGHSIAVRLHQQGF---RVVVHYRHSE   46 (276)
T ss_dssp             ---CCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCCh
Confidence            35789999999999999999999999987   7999999 53

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.84  E-value=1.8e-05  Score=59.34  Aligned_cols=39  Identities=15%  Similarity=0.265  Sum_probs=34.6

Q ss_pred             hhcCCeEEEEcCCCh-HHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGF-MGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGf-IGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+++++++||||+|+ ||.+++++|++.|.   +|+++.|+..
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~---~V~~~~r~~~   58 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGA---DVVISDYHER   58 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHCCC---EEEEecCCHH
Confidence            468999999999986 99999999999987   7999999743

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=97.84  E-value=2e-05  Score=59.26  Aligned_cols=38  Identities=18%  Similarity=0.275  Sum_probs=34.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~   47 (256)
T 3gaf_A           10 LNDAVAIVTGAAAGIGRAIAGTFAKAGA---SVVVTDLKSE   47 (256)
T ss_dssp             CTTCEEEECSCSSHHHHHHHHHHHHHTC---EEEEEESSHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            5789999999999999999999999987   7999999743

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=97.84  E-value=2.4e-05  Score=58.56  Aligned_cols=36  Identities=28%  Similarity=0.299  Sum_probs=32.7

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +|+++||||+|+||.+++++|++.|.   +|+++.|+..
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~   37 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGF---DIAVADLPQQ   37 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC---EEEEEECGGG
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCcc
Confidence            68999999999999999999999987   7999998753

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=97.83  E-value=3.8e-05  Score=60.31  Aligned_cols=38  Identities=21%  Similarity=0.339  Sum_probs=33.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|++.+|+..
T Consensus         3 m~~k~vlVTGas~GIG~aia~~L~~~G~---~V~~~~r~~~   40 (324)
T 3u9l_A            3 MSKKIILITGASSGFGRLTAEALAGAGH---RVYASMRDIV   40 (324)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESCTT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEecCccc
Confidence            4578999999999999999999999987   7999999743

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.83  E-value=2.4e-05  Score=59.77  Aligned_cols=37  Identities=16%  Similarity=0.199  Sum_probs=34.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus        25 l~~k~vlVTGas~GIG~aia~~l~~~G~---~V~~~~r~~   61 (277)
T 4dqx_A           25 LNQRVCIVTGGGSGIGRATAELFAKNGA---YVVVADVNE   61 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999987   799999874

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=97.83  E-value=1.6e-05  Score=60.94  Aligned_cols=39  Identities=18%  Similarity=0.104  Sum_probs=32.4

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+++|+++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~   68 (281)
T 4dry_A           30 SGEGRIALVTGGGTGVGRGIAQALSAEGY---SVVITGRRPD   68 (281)
T ss_dssp             ----CEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            35789999999999999999999999987   7999999753

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=97.83  E-value=2e-05  Score=60.07  Aligned_cols=39  Identities=15%  Similarity=0.230  Sum_probs=33.8

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ..+++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus        19 ~~l~~k~~lVTGas~gIG~aia~~L~~~G~---~V~~~~r~~   57 (288)
T 2x9g_A           19 SHMEAPAAVVTGAAKRIGRAIAVKLHQTGY---RVVIHYHNS   57 (288)
T ss_dssp             ---CCCEEEETTCSSHHHHHHHHHHHHHTC---EEEEEESSC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC---eEEEEeCCc
Confidence            346889999999999999999999999987   799999975

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=97.83  E-value=2.4e-05  Score=59.02  Aligned_cols=38  Identities=32%  Similarity=0.379  Sum_probs=34.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++|+++||||+|.||.+++++|++.|.   +|++..|+..
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~G~---~V~~~~r~~~   43 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEAGA---AVAFCARDGE   43 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            5789999999999999999999999987   7999999743

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=97.83  E-value=1.7e-05  Score=60.32  Aligned_cols=38  Identities=18%  Similarity=0.351  Sum_probs=33.4

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++++|+||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus        41 ~l~~k~vlITGasggIG~~la~~L~~~G~---~V~~~~r~~   78 (285)
T 2c07_A           41 CGENKVALVTGAGRGIGREIAKMLAKSVS---HVICISRTQ   78 (285)
T ss_dssp             CCSSCEEEEESTTSHHHHHHHHHHTTTSS---EEEEEESSH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHcCC---EEEEEcCCH
Confidence            35789999999999999999999999986   788888864

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=97.83  E-value=2.7e-05  Score=58.17  Aligned_cols=36  Identities=25%  Similarity=0.230  Sum_probs=32.2

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+|+++||||+|+||.+++++|++.|.   +|+++.|..
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~---~v~~~~~~~   41 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGY---SVTVTYHSD   41 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCC---EEEEEcCCC
Confidence            468999999999999999999999987   788887764

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=97.83  E-value=2.9e-05  Score=58.94  Aligned_cols=38  Identities=13%  Similarity=0.277  Sum_probs=34.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++|+++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus         4 l~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~   41 (274)
T 3e03_A            4 LSGKTLFITGASRGIGLAIALRAARDGA---NVAIAAKSAV   41 (274)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCCS
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC---EEEEEeccch
Confidence            5789999999999999999999999987   7999999754

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=97.82  E-value=3.5e-05  Score=57.90  Aligned_cols=37  Identities=11%  Similarity=0.117  Sum_probs=34.0

Q ss_pred             hcCCeEEEEcCC--ChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGT--GFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGat--GfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+  |+||.+++++|++.|.   +|+++.|+.
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~---~V~~~~r~~   45 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGA---ELAFTYQND   45 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC---EEEEEESST
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCC---EEEEEcCcH
Confidence            578999999999  9999999999999987   799999976

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.82  E-value=2e-05  Score=59.92  Aligned_cols=38  Identities=16%  Similarity=0.113  Sum_probs=34.5

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus        26 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   63 (283)
T 1g0o_A           26 SLEGKVALVTGAGRGIGREMAMELGRRGC---KVIVNYANS   63 (283)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            36789999999999999999999999987   799999875

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=97.82  E-value=1.8e-05  Score=60.35  Aligned_cols=38  Identities=26%  Similarity=0.332  Sum_probs=34.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++|+++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~   39 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGA---KILLGARRQA   39 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSHH
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            4689999999999999999999999987   7999999743

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=97.82  E-value=1.8e-05  Score=58.09  Aligned_cols=35  Identities=26%  Similarity=0.265  Sum_probs=30.5

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEE-ecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLL-VRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l-~R~~  102 (121)
                      +|+|+||||+|+||.+++++|++.|.   +|+++ .|+.
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~---~v~~~~~r~~   36 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGC---KVLVNYARSA   36 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCCCH
Confidence            57899999999999999999999987   67774 6763

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=97.82  E-value=2.3e-05  Score=59.56  Aligned_cols=37  Identities=19%  Similarity=0.227  Sum_probs=32.6

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+.+|+++||||+|+||.+++++|++.|.   +|+++.|+
T Consensus        13 ~~~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~   49 (266)
T 3p19_A           13 GSMKKLVVITGASSGIGEAIARRFSEEGH---PLLLLARR   49 (266)
T ss_dssp             --CCCEEEEESTTSHHHHHHHHHHHHTTC---CEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECC
Confidence            46789999999999999999999999987   68888886

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=97.81  E-value=4.1e-05  Score=57.95  Aligned_cols=38  Identities=3%  Similarity=0.019  Sum_probs=34.5

Q ss_pred             hcCCeEEEEcCC--ChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGT--GFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGat--GfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++|+++||||+  |+||.+++++|++.|.   +|+++.|+..
T Consensus         4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~---~V~~~~r~~~   43 (275)
T 2pd4_A            4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGA---TLAFTYLNES   43 (275)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTC---EEEEEESSTT
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            578999999999  9999999999999987   7999999864

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=97.81  E-value=2.9e-05  Score=58.72  Aligned_cols=37  Identities=11%  Similarity=0.286  Sum_probs=33.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|.||.+++++|++.|.   +|+++.|..
T Consensus         9 l~~k~vlVTGas~GIG~aia~~la~~G~---~V~~~~r~~   45 (262)
T 3ksu_A            9 LKNKVIVIAGGIKNLGALTAKTFALESV---NLVLHYHQA   45 (262)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHTTSSC---EEEEEESCG
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEecCc
Confidence            5789999999999999999999999987   788888754

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=97.81  E-value=1.6e-05  Score=60.96  Aligned_cols=37  Identities=16%  Similarity=0.212  Sum_probs=34.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|.||.+++++|++.|.   +|+++.|+.
T Consensus         6 l~gk~vlVTGas~GIG~aia~~la~~G~---~V~~~~r~~   42 (280)
T 3tox_A            6 LEGKIAIVTGASSGIGRAAALLFAREGA---KVVVTARNG   42 (280)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEECCSCH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            5789999999999999999999999987   799999874

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.81  E-value=1.8e-05  Score=60.54  Aligned_cols=38  Identities=16%  Similarity=0.084  Sum_probs=34.2

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus        26 ~l~gk~vlVTGas~gIG~aia~~la~~G~---~V~~~~r~~   63 (277)
T 3gvc_A           26 DLAGKVAIVTGAGAGIGLAVARRLADEGC---HVLCADIDG   63 (277)
T ss_dssp             -CTTCEEEETTTTSTHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            46889999999999999999999999987   799999874

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=97.81  E-value=3.5e-05  Score=58.90  Aligned_cols=38  Identities=21%  Similarity=0.183  Sum_probs=33.6

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ..+.+|+++||||+|+||.+++++|++.|.   +|++..|.
T Consensus        21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~---~V~~~~r~   58 (281)
T 3v2h_A           21 QSMMTKTAVITGSTSGIGLAIARTLAKAGA---NIVLNGFG   58 (281)
T ss_dssp             -CCTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEECCC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCC
Confidence            346789999999999999999999999987   79998884

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=97.81  E-value=2e-05  Score=59.98  Aligned_cols=40  Identities=15%  Similarity=0.174  Sum_probs=35.6

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ..+++|+++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus        24 ~~l~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~~   63 (270)
T 3ftp_A           24 KTLDKQVAIVTGASRGIGRAIALELARRGA---MVIGTATTEA   63 (270)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            346889999999999999999999999987   7999999743

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.79  E-value=3.1e-05  Score=57.89  Aligned_cols=35  Identities=17%  Similarity=0.170  Sum_probs=32.2

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~   36 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGF---AVAIADYND   36 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            58899999999999999999999987   799999974

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=97.79  E-value=1.9e-05  Score=57.87  Aligned_cols=35  Identities=11%  Similarity=0.152  Sum_probs=30.7

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEE-ecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLL-VRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l-~R~~  102 (121)
                      +|+++||||+|+||.+++++|++.|.   +|+++ .|+.
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~---~v~~~~~r~~   36 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGF---ALAIHYGQNR   36 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTC---EEEEEESSCH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCCCH
Confidence            47899999999999999999999987   68887 6763

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.79  E-value=2.3e-05  Score=60.47  Aligned_cols=37  Identities=19%  Similarity=0.292  Sum_probs=34.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus        24 l~~k~vlVTGas~gIG~aia~~L~~~G~---~V~~~~r~~   60 (297)
T 1xhl_A           24 FSGKSVIITGSSNGIGRSAAVIFAKEGA---QVTITGRNE   60 (297)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5789999999999999999999999987   799999974

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=97.79  E-value=3.2e-05  Score=59.13  Aligned_cols=38  Identities=16%  Similarity=0.440  Sum_probs=35.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++|+++||||+|.||.+++++|++.|.   +|+++.|+..
T Consensus         7 l~~k~vlVTGas~GIG~aia~~l~~~G~---~V~~~~r~~~   44 (285)
T 3sc4_A            7 LRGKTMFISGGSRGIGLAIAKRVAADGA---NVALVAKSAE   44 (285)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHTTTC---EEEEEESCCS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECChh
Confidence            5789999999999999999999999987   7999999765

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.79  E-value=2.6e-05  Score=58.43  Aligned_cols=38  Identities=18%  Similarity=0.218  Sum_probs=34.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++|+++||||+|.||.+++++|++.|.   +|++..|+..
T Consensus         7 l~gk~~lVTGas~gIG~a~a~~l~~~G~---~V~~~~r~~~   44 (248)
T 3op4_A            7 LEGKVALVTGASRGIGKAIAELLAERGA---KVIGTATSES   44 (248)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESSHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            5789999999999999999999999987   7999998743

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=97.78  E-value=3e-05  Score=58.04  Aligned_cols=37  Identities=32%  Similarity=0.369  Sum_probs=31.1

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+++|+++||||+|.||.+++++|++.|.   +|+++.|.
T Consensus         6 ~l~~k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~   42 (257)
T 3tl3_A            6 EIRDAVAVVTGGASGLGLATTKRLLDAGA---QVVVLDIR   42 (257)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHHTC---EEEEEESS
T ss_pred             eecCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCc
Confidence            36789999999999999999999999987   79999884

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=97.78  E-value=2.6e-05  Score=59.25  Aligned_cols=38  Identities=18%  Similarity=0.160  Sum_probs=34.2

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+++||||+|+||.+++++|++.|.   +|++..|+.
T Consensus        24 ~l~gk~vlVTGas~gIG~aia~~la~~G~---~V~~~~r~~   61 (266)
T 3grp_A           24 KLTGRKALVTGATGGIGEAIARCFHAQGA---IVGLHGTRE   61 (266)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            36789999999999999999999999987   788888864

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.78  E-value=3.7e-05  Score=57.17  Aligned_cols=41  Identities=17%  Similarity=0.231  Sum_probs=31.0

Q ss_pred             hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEe-cCC
Q psy3445          59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLV-RPK  102 (121)
Q Consensus        59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~-R~~  102 (121)
                      .....++++|+||||+|+||.+++++|++.|.   +|++.. |+.
T Consensus         7 ~~~~~~~k~vlITGas~giG~~ia~~l~~~G~---~v~~~~~~~~   48 (256)
T 3ezl_A            7 HHMVMSQRIAYVTGGMGGIGTSICQRLHKDGF---RVVAGCGPNS   48 (256)
T ss_dssp             ------CEEEEETTTTSHHHHHHHHHHHHTTE---EEEEEECTTC
T ss_pred             CCCCCCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCCH
Confidence            34567889999999999999999999999987   677777 443

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=97.78  E-value=3.5e-05  Score=58.51  Aligned_cols=36  Identities=19%  Similarity=0.244  Sum_probs=32.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|+++.|.
T Consensus        26 l~~k~vlVTGas~gIG~aia~~la~~G~---~V~~~~~~   61 (269)
T 4dmm_A           26 LTDRIALVTGASRGIGRAIALELAAAGA---KVAVNYAS   61 (269)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCC
Confidence            6789999999999999999999999987   78888884

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=97.78  E-value=3.5e-05  Score=58.76  Aligned_cols=37  Identities=19%  Similarity=0.432  Sum_probs=33.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|.||.+++++|++.|.   +|+++.|+.
T Consensus         3 l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~   39 (281)
T 3zv4_A            3 LTGEVALITGGASGLGRALVDRFVAEGA---RVAVLDKSA   39 (281)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCcC---EEEEEeCCH
Confidence            5789999999999999999999999987   799999864

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=97.77  E-value=6.6e-05  Score=56.51  Aligned_cols=36  Identities=14%  Similarity=0.268  Sum_probs=31.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +++|+++||||+|.||.+++++|++.|.   +|++..|.
T Consensus         6 l~~k~vlVTGas~GIG~aia~~la~~G~---~V~~~~~~   41 (259)
T 3edm_A            6 FTNRTIVVAGAGRDIGRACAIRFAQEGA---NVVLTYNG   41 (259)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECS
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCC
Confidence            5789999999999999999999999987   68777553

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=97.77  E-value=2.5e-05  Score=57.50  Aligned_cols=38  Identities=21%  Similarity=0.300  Sum_probs=31.8

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCc----cEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHL----KHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~----~~V~~l~R~~  102 (121)
                      +|+|+||||+|+||.+++++|++.|+..    .+|+++.|+.
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~   43 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA   43 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCH
Confidence            6789999999999999999999997610    0588888864

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.77  E-value=3.5e-05  Score=58.44  Aligned_cols=37  Identities=16%  Similarity=0.088  Sum_probs=33.8

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+++|+++||||+|.||.+++++|++.|.   +|+++.|.
T Consensus        12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~---~V~~~~r~   48 (280)
T 3pgx_A           12 SLQGRVAFITGAARGQGRSHAVRLAAEGA---DIIACDIC   48 (280)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEecc
Confidence            46889999999999999999999999987   79999884

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.76  E-value=2.6e-05  Score=59.59  Aligned_cols=38  Identities=21%  Similarity=0.064  Sum_probs=32.6

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+|+++||||+|.||.+++++|++.|.   +|+++.|+.
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~   62 (272)
T 4dyv_A           25 KTGKKIAIVTGAGSGVGRAVAVALAGAGY---GVALAGRRL   62 (272)
T ss_dssp             ---CCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            35789999999999999999999999987   799999974

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=97.76  E-value=3.6e-05  Score=59.01  Aligned_cols=37  Identities=16%  Similarity=0.121  Sum_probs=33.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|.||.+++++|++.|.   +|+++.|+.
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~r~~   62 (283)
T 3v8b_A           26 QPSPVALITGAGSGIGRATALALAADGV---TVGALGRTR   62 (283)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5689999999999999999999999987   799999974

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=97.75  E-value=5.3e-05  Score=57.70  Aligned_cols=37  Identities=22%  Similarity=0.304  Sum_probs=32.6

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|.||.+++++|++.|.   +|++..|..
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~~~~   65 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLALEGA---AVALTYVNA   65 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCC
Confidence            5789999999999999999999999987   688876653

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=97.75  E-value=3.6e-05  Score=58.45  Aligned_cols=38  Identities=18%  Similarity=0.100  Sum_probs=34.5

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ..+++|+++||||+|.||.+++++|++.|.   +|+++.|+
T Consensus         7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~---~V~~~~~~   44 (286)
T 3uve_A            7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGA---DIIAVDIC   44 (286)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCC---eEEEEecc
Confidence            346899999999999999999999999987   79999886

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=97.75  E-value=8e-05  Score=56.35  Aligned_cols=37  Identities=14%  Similarity=0.132  Sum_probs=33.9

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+++|+++||||+|.||.+++++|++.|.   +|+++.|.
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~---~V~~~~r~   44 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGA---DIIAVDIA   44 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCC---EEEEEecc
Confidence            46889999999999999999999999987   79998884

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=97.75  E-value=3.7e-05  Score=59.14  Aligned_cols=38  Identities=21%  Similarity=0.293  Sum_probs=34.0

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+++||||+|.||.+++++|++.|.   +|++..|+.
T Consensus        46 ~l~~k~vlVTGas~GIG~aia~~la~~G~---~V~~~~~~~   83 (294)
T 3r3s_A           46 RLKDRKALVTGGDSGIGRAAAIAYAREGA---DVAINYLPA   83 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEECCGG
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            46889999999999999999999999987   788888863

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=97.74  E-value=2.8e-05  Score=57.66  Aligned_cols=36  Identities=36%  Similarity=0.438  Sum_probs=29.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|+||.+++++|++ +.   .|+++.|+.
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~-g~---~v~~~~r~~   38 (245)
T 3e9n_A            3 LKKKIAVVTGATGGMGIEIVKDLSR-DH---IVYALGRNP   38 (245)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHTT-TS---EEEEEESCH
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHhC-CC---eEEEEeCCH
Confidence            4689999999999999999999987 55   799999864

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=97.74  E-value=4.6e-05  Score=57.89  Aligned_cols=38  Identities=11%  Similarity=0.152  Sum_probs=34.7

Q ss_pred             hhcCCeEEEEcCCCh--HHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGF--MGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGf--IGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+++||||+|+  ||.+++++|++.|.   +|+++.|+.
T Consensus        23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~---~V~~~~r~~   62 (280)
T 3nrc_A           23 FLAGKKILITGLLSNKSIAYGIAKAMHREGA---ELAFTYVGQ   62 (280)
T ss_dssp             TTTTCEEEECCCCSTTCHHHHHHHHHHHTTC---EEEEEECTT
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHcCC---EEEEeeCch
Confidence            467899999999988  99999999999987   799999976

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=97.74  E-value=4.3e-05  Score=58.11  Aligned_cols=37  Identities=8%  Similarity=0.103  Sum_probs=34.1

Q ss_pred             hcCCeEEEEcCC--ChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGT--GFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGat--GfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+  |+||.+++++|++.|.   +|+++.|+.
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~---~V~~~~r~~   57 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGA---QLAFTYATP   57 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTC---EEEEEESSG
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            678999999999  9999999999999987   799999975

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=97.73  E-value=6.1e-05  Score=57.52  Aligned_cols=37  Identities=19%  Similarity=0.030  Sum_probs=33.0

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+++|+++||||+|+||.+++++|++.|.   +|+++.|.
T Consensus        26 ~~~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~~~   62 (280)
T 4da9_A           26 QKARPVAIVTGGRRGIGLGIARALAASGF---DIAITGIG   62 (280)
T ss_dssp             CCCCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESC
T ss_pred             ccCCCEEEEecCCCHHHHHHHHHHHHCCC---eEEEEeCC
Confidence            35689999999999999999999999987   78888864

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=97.73  E-value=1.5e-05  Score=58.44  Aligned_cols=37  Identities=22%  Similarity=0.214  Sum_probs=33.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|++..|+.
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~---~V~~~~r~~   40 (223)
T 3uce_A            4 SDKTVYVVLGGTSGIGAELAKQLESEHT---IVHVASRQT   40 (223)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHCSTTE---EEEEESGGG
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEecCCc
Confidence            4689999999999999999999999987   799999864

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=97.72  E-value=5.1e-05  Score=57.37  Aligned_cols=38  Identities=16%  Similarity=0.093  Sum_probs=33.4

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ..+++|+++||||+|.||.+++++|++.|.   +|++..|.
T Consensus        14 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~---~V~~~~~~   51 (270)
T 3is3_A           14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGA---KVVVNYAN   51 (270)
T ss_dssp             TCCTTCEEEESCTTSHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred             CCcCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCC
Confidence            346899999999999999999999999987   68877764

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=97.70  E-value=7.2e-05  Score=55.31  Aligned_cols=36  Identities=14%  Similarity=0.276  Sum_probs=31.4

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      .+++|+++||||+|.||.+++++|++.|.   +|+++.+
T Consensus         4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~---~v~~~~~   39 (255)
T 3icc_A            4 MLKGKVALVTGASRGIGRAIAKRLANDGA---LVAIHYG   39 (255)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEES
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCC---eEEEEeC
Confidence            46789999999999999999999999987   6777544

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.70  E-value=3.9e-05  Score=57.85  Aligned_cols=40  Identities=23%  Similarity=0.238  Sum_probs=31.9

Q ss_pred             hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ....+++|+++||||+|.||.+++++|++.|.   +|++..|.
T Consensus        19 p~~~~~~k~vlITGas~gIG~~~a~~l~~~G~---~v~~~~~~   58 (269)
T 3gk3_A           19 PGSMQAKRVAFVTGGMGGLGAAISRRLHDAGM---AVAVSHSE   58 (269)
T ss_dssp             -----CCCEEEETTTTSHHHHHHHHHHHTTTC---EEEEEECS
T ss_pred             chhhhcCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCC
Confidence            34567889999999999999999999999987   68888754

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=97.69  E-value=3.9e-05  Score=59.08  Aligned_cols=38  Identities=5%  Similarity=0.017  Sum_probs=34.4

Q ss_pred             hhcCCeEEEEcCCCh--HHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGF--MGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGf--IGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+++||||+|+  ||.+++++|++.|.   +|++..|+.
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~---~V~~~~r~~   67 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGA---ELAFTYQGD   67 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTC---EEEEEECSH
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            478999999999999  99999999999987   788888873

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=97.68  E-value=0.0001  Score=55.93  Aligned_cols=36  Identities=14%  Similarity=0.111  Sum_probs=30.2

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +++|+++||||+|.||.+++++|++.|.   +|++..+.
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~---~Vv~~~~~   60 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGF---TVVINYAG   60 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTC---EEEEEESS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEcCC
Confidence            5689999999999999999999999987   67776553

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=97.68  E-value=4.1e-05  Score=57.74  Aligned_cols=36  Identities=25%  Similarity=0.287  Sum_probs=31.5

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEE-ecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLL-VRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l-~R~~  102 (121)
                      ++|+++||||+|+||.+++++|++.|.   +|++. .|+.
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~---~vv~~~~r~~   39 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGY---NIVINYARSK   39 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESSCH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC---EEEEEcCCCH
Confidence            578999999999999999999999987   67775 6754

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=97.67  E-value=4e-05  Score=57.30  Aligned_cols=37  Identities=22%  Similarity=0.285  Sum_probs=33.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHH---hCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLR---AIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~---~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||+|.||.+++++|++   .|.   +|+++.|+.
T Consensus         4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~---~V~~~~r~~   43 (259)
T 1oaa_A            4 LGCAVCVLTGASRGFGRALAPQLARLLSPGS---VMLVSARSE   43 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTC---EEEEEESCH
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHhhcCCC---eEEEEeCCH
Confidence            5689999999999999999999999   776   799999974

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=97.67  E-value=4.4e-05  Score=56.07  Aligned_cols=34  Identities=21%  Similarity=0.232  Sum_probs=30.5

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+++||||+|.||.+++++|++.|.   +|+++.|+.
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~---~V~~~~r~~   35 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK---ATYLTGRSE   35 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC---CEEEEESCH
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5799999999999999999999987   699999974

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=97.67  E-value=6.9e-05  Score=58.18  Aligned_cols=37  Identities=16%  Similarity=0.116  Sum_probs=33.9

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+++|+++||||+|.||.+++++|++.|.   +|+++.|+
T Consensus        24 ~l~gk~vlVTGas~GIG~aia~~la~~G~---~Vv~~~r~   60 (322)
T 3qlj_A           24 VVDGRVVIVTGAGGGIGRAHALAFAAEGA---RVVVNDIG   60 (322)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEECCC
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCc
Confidence            46889999999999999999999999987   79998886

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=97.67  E-value=6.4e-05  Score=59.74  Aligned_cols=40  Identities=20%  Similarity=0.313  Sum_probs=36.0

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+++|+++||||+|.||.+++++|++.|.   +|+++.|+...
T Consensus        42 ~l~gk~vlVTGas~GIG~aia~~La~~Ga---~Vvl~~r~~~~   81 (346)
T 3kvo_A           42 RLAGCTVFITGASRGIGKAIALKAAKDGA---NIVIAAKTAQP   81 (346)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTC---EEEEEESCCSC
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHHHCCC---EEEEEECChhh
Confidence            46899999999999999999999999987   79999997653

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.66  E-value=7.3e-05  Score=57.51  Aligned_cols=39  Identities=5%  Similarity=0.014  Sum_probs=34.9

Q ss_pred             hhcCCeEEEEcCCC--hHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTG--FMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatG--fIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+++|+++||||+|  .||.+++++|++.|.   +|++..|+..
T Consensus        27 ~l~~k~vlVTGasg~~GIG~~ia~~la~~G~---~V~~~~r~~~   67 (296)
T 3k31_A           27 LMEGKKGVIIGVANDKSLAWGIAKAVCAQGA---EVALTYLSET   67 (296)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHHTTC---EEEEEESSGG
T ss_pred             ccCCCEEEEEeCCCCCCHHHHHHHHHHHCCC---EEEEEeCChH
Confidence            46789999999998  999999999999987   7999999853

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=97.66  E-value=5.3e-05  Score=56.98  Aligned_cols=39  Identities=23%  Similarity=0.194  Sum_probs=30.1

Q ss_pred             hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      ....+.+|+++||||+|+||.+++++|++.|.   +|+++.+
T Consensus        20 ~~~~l~~k~vlVTGas~gIG~~la~~l~~~G~---~v~i~~~   58 (267)
T 4iiu_A           20 FQSNAMSRSVLVTGASKGIGRAIARQLAADGF---NIGVHYH   58 (267)
T ss_dssp             -----CCCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEES
T ss_pred             hccccCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeC
Confidence            33456789999999999999999999999987   5766554

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=97.65  E-value=6.9e-05  Score=57.61  Aligned_cols=38  Identities=18%  Similarity=0.107  Sum_probs=34.7

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ..+++|+++||||+|.||.+++++|++.|.   +|+++.|+
T Consensus        24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~---~V~~~~~~   61 (299)
T 3t7c_A           24 GKVEGKVAFITGAARGQGRSHAITLAREGA---DIIAIDVC   61 (299)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             cccCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEecc
Confidence            457899999999999999999999999987   79998886

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=97.65  E-value=5.6e-05  Score=58.80  Aligned_cols=37  Identities=16%  Similarity=0.150  Sum_probs=33.7

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+++|+++||||+|.||.+++++|++.|.   +|+++.|+
T Consensus        43 ~l~gk~~lVTGas~GIG~aia~~la~~G~---~Vv~~~~~   79 (317)
T 3oec_A           43 RLQGKVAFITGAARGQGRTHAVRLAQDGA---DIVAIDLC   79 (317)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCC---eEEEEecc
Confidence            46889999999999999999999999987   78888875

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=97.61  E-value=6.5e-05  Score=57.56  Aligned_cols=37  Identities=22%  Similarity=0.190  Sum_probs=33.2

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEe-cCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLV-RPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~-R~~  102 (121)
                      +++|+++||||+|.||.+++++|++.|.   +|+++. |+.
T Consensus         7 l~~k~~lVTGas~GIG~aia~~la~~G~---~V~~~~~r~~   44 (291)
T 1e7w_A            7 PTVPVALVTGAAKRLGRSIAEGLHAEGY---AVCLHYHRSA   44 (291)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEcCCCH
Confidence            5789999999999999999999999987   799998 864

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=97.61  E-value=6.8e-05  Score=57.71  Aligned_cols=44  Identities=23%  Similarity=0.249  Sum_probs=36.9

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ...+++|+++||||+|.||.+++++|++.|....+|++..|+..
T Consensus        28 ~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~   71 (287)
T 3rku_A           28 AERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLE   71 (287)
T ss_dssp             HHHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             hhhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHH
Confidence            35578999999999999999999999998763337899998743

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=97.60  E-value=6.6e-05  Score=58.84  Aligned_cols=37  Identities=22%  Similarity=0.190  Sum_probs=33.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEe-cCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLV-RPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~-R~~  102 (121)
                      +++++++||||+|.||.+++++|++.|.   +|+++. |+.
T Consensus        44 l~~k~~lVTGas~GIG~aia~~La~~G~---~Vv~~~~r~~   81 (328)
T 2qhx_A           44 PTVPVALVTGAAKRLGRSIAEGLHAEGY---AVCLHYHRSA   81 (328)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEcCCCH
Confidence            6789999999999999999999999987   799888 864

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.59  E-value=5.3e-05  Score=56.66  Aligned_cols=36  Identities=19%  Similarity=0.008  Sum_probs=32.2

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      |+++||||+|+||.+++++|++.|.   +|+++.|+...
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~   37 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH---TVACHDESFKQ   37 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC---EEEECCGGGGS
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHHH
Confidence            5799999999999999999999987   79999997544

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=97.58  E-value=9.3e-05  Score=55.75  Aligned_cols=38  Identities=18%  Similarity=0.138  Sum_probs=30.9

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEE-ecC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLL-VRP  101 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l-~R~  101 (121)
                      ...++++++||||+|+||.+++++|++.|.   +|+++ .|+
T Consensus        22 ~m~~~k~vlITGas~gIG~a~a~~l~~~G~---~V~~~~~~~   60 (272)
T 4e3z_A           22 SMSDTPVVLVTGGSRGIGAAVCRLAARQGW---RVGVNYAAN   60 (272)
T ss_dssp             --CCSCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             hccCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCCC
Confidence            345678999999999999999999999987   57665 454

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=97.57  E-value=5e-05  Score=54.25  Aligned_cols=32  Identities=28%  Similarity=0.376  Sum_probs=28.8

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+++||||+|+||++++++|++.     +|+++.|+.
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~-----~V~~~~r~~   32 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH-----DLLLSGRRA   32 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS-----EEEEECSCH
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC-----CEEEEECCH
Confidence            57999999999999999999986     599999964

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=97.55  E-value=0.0001  Score=55.55  Aligned_cols=37  Identities=8%  Similarity=0.041  Sum_probs=33.7

Q ss_pred             hcCCeEEEEcC--CChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGG--TGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGa--tGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||  +|.||.+++++|++.|.   +|+++.|+.
T Consensus         5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~---~V~~~~r~~   43 (269)
T 2h7i_A            5 LDGKRILVSGIITDSSIAFHIARVAQEQGA---QLVLTGFDR   43 (269)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTC---EEEEEECSC
T ss_pred             cCCCEEEEECCCCCCchHHHHHHHHHHCCC---EEEEEecCh
Confidence            57899999999  99999999999999987   799999875

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=97.55  E-value=0.00013  Score=54.48  Aligned_cols=40  Identities=15%  Similarity=0.094  Sum_probs=35.2

Q ss_pred             hhcCCeEEEEcCC--ChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          62 FFRDASVFVTGGT--GFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        62 ~~~~~~VlVTGat--GfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+++|+++||||+  |.||.+++++|++.|.   +|+++.|+...
T Consensus        17 ~l~~k~vlITGas~~~giG~~~a~~l~~~G~---~v~~~~~~~~~   58 (267)
T 3gdg_A           17 SLKGKVVVVTGASGPKGMGIEAARGCAEMGA---AVAITYASRAQ   58 (267)
T ss_dssp             CCTTCEEEETTCCSSSSHHHHHHHHHHHTSC---EEEECBSSSSS
T ss_pred             CcCCCEEEEECCCCCCChHHHHHHHHHHCCC---eEEEEeCCcch
Confidence            3688999999999  8999999999999987   78888887554

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=97.53  E-value=7.8e-05  Score=56.88  Aligned_cols=37  Identities=22%  Similarity=0.302  Sum_probs=32.2

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++ |+++||||+|.||.+++++|++.|.   +|+++.|+.
T Consensus        19 ~~~-k~vlVTGas~gIG~aia~~La~~G~---~V~~~~r~~   55 (272)
T 2nwq_A           19 HMS-STLFITGATSGFGEACARRFAEAGW---SLVLTGRRE   55 (272)
T ss_dssp             --C-CEEEESSTTTSSHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CcC-cEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            345 8999999999999999999999987   799999974

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=97.53  E-value=5.9e-05  Score=56.09  Aligned_cols=35  Identities=20%  Similarity=0.104  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEE-e--cCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLL-V--RPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l-~--R~~  102 (121)
                      +|+++||||+|+||.+++++|++.|.   +|+++ .  |+.
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~---~V~~~~~~~r~~   38 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGY---TVVCHDASFADA   38 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTC---EEEECCGGGGSH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC---EEEEecCCcCCH
Confidence            47899999999999999999999987   78888 6  864

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=97.52  E-value=8.3e-05  Score=55.71  Aligned_cols=34  Identities=21%  Similarity=0.304  Sum_probs=31.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+++||||+|+||.+++++|++.|.   +|+++.|+.
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~---~V~~~~r~~   34 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH---KVIATGRRQ   34 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            5799999999999999999999987   799999974

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=97.50  E-value=8.1e-05  Score=58.27  Aligned_cols=38  Identities=26%  Similarity=0.291  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCC----CccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIP----HLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~----~~~~V~~l~R~~  102 (121)
                      .++|+||||+||||++++..|+..+.    ...+|+++++..
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~   45 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ   45 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCC
Confidence            36899999999999999999998764    113788888753

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=97.47  E-value=0.00011  Score=54.59  Aligned_cols=37  Identities=30%  Similarity=0.328  Sum_probs=31.9

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHH-hCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLR-AIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~-~~~~~~~V~~l~R~~~  103 (121)
                      ++|+++||||+|.||.+++++|++ .+.   +|++..|...
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~---~v~~~~~~~~   40 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNH---TVINIDIQQS   40 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTE---EEEEEESSCC
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCc---EEEEeccccc
Confidence            578999999999999999999999 554   7888888654

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=97.46  E-value=0.00021  Score=59.28  Aligned_cols=40  Identities=33%  Similarity=0.446  Sum_probs=35.1

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +-.+++++||||+|+||.+++++|++.|..  +|+++.|+..
T Consensus       223 ~~~~~~vLITGgtGgIG~~la~~La~~G~~--~vvl~~R~~~  262 (486)
T 2fr1_A          223 WKPTGTVLVTGGTGGVGGQIARWLARRGAP--HLLLVSRSGP  262 (486)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHHTCS--EEEEEESSGG
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHcCCC--EEEEEcCCCC
Confidence            456899999999999999999999999873  6999999754

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=97.46  E-value=0.00019  Score=56.20  Aligned_cols=35  Identities=20%  Similarity=0.214  Sum_probs=31.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      +++|+++||||+|+||.+++++|++.|.   +|++..|
T Consensus         7 l~gk~~lVTGas~GIG~~~a~~La~~Ga---~Vv~~~~   41 (319)
T 1gz6_A            7 FDGRVVLVTGAGGGLGRAYALAFAERGA---LVVVNDL   41 (319)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEcC
Confidence            5789999999999999999999999987   7888655

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.41  E-value=0.00019  Score=46.60  Aligned_cols=36  Identities=14%  Similarity=0.185  Sum_probs=31.0

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+|+|+ |++|+.+++.|++.+.  .+|+++.|++
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~--~~v~~~~r~~   39 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSN--YSVTVADHDL   39 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSS--EEEEEEESCH
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCC--ceEEEEeCCH
Confidence            3578999999 9999999999999872  2799999974

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=97.40  E-value=0.00028  Score=54.18  Aligned_cols=40  Identities=20%  Similarity=0.323  Sum_probs=36.2

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .|+||+++||||++=||..+++.|++.|.   +|++..|+...
T Consensus         8 lf~GK~alVTGas~GIG~aia~~la~~Ga---~Vv~~~~~~~~   47 (242)
T 4b79_A            8 IYAGQQVLVTGGSSGIGAAIAMQFAELGA---EVVALGLDADG   47 (242)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSTTS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCHHH
Confidence            57899999999999999999999999998   79999997544

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=97.39  E-value=0.00022  Score=53.34  Aligned_cols=37  Identities=24%  Similarity=0.356  Sum_probs=31.7

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +|+++||||+|.||.+++++|++.+.. ..|++..|+.
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~-~~v~~~~r~~   38 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKD-TVVYGVARSE   38 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSS-CEEEEEESCH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCC-eEEEEecCCH
Confidence            689999999999999999999998643 2788888864

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=97.38  E-value=0.00023  Score=55.37  Aligned_cols=42  Identities=14%  Similarity=0.271  Sum_probs=36.3

Q ss_pred             hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++.++||+++||||++=||..+++.|++.|.   +|++..|+..
T Consensus        23 Ms~rL~gKvalVTGas~GIG~aiA~~la~~Ga---~V~i~~r~~~   64 (273)
T 4fgs_A           23 MTQRLNAKIAVITGATSGIGLAAAKRFVAEGA---RVFITGRRKD   64 (273)
T ss_dssp             --CTTTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             hcchhCCCEEEEeCcCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            44558999999999999999999999999997   7999999743

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=97.37  E-value=0.00031  Score=58.78  Aligned_cols=40  Identities=25%  Similarity=0.431  Sum_probs=34.7

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +-.+++|+||||+|+||.+++++|++.|..  +|+++.|+..
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~--~vvl~~R~~~  295 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGAE--RLVLTSRRGP  295 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCS--EEEEEESSGG
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCc--EEEEEecCCc
Confidence            446799999999999999999999998763  7999999753

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=97.36  E-value=0.00023  Score=54.25  Aligned_cols=35  Identities=20%  Similarity=0.200  Sum_probs=31.5

Q ss_pred             hcCCeEEEEcCC--ChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          63 FRDASVFVTGGT--GFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        63 ~~~~~VlVTGat--GfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      +++|+++||||+  |.||.+++++|++.|.   +|+++.|
T Consensus         6 l~~k~~lVTGas~~~GIG~aia~~la~~G~---~V~~~~r   42 (297)
T 1d7o_A            6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGA---EILVGTW   42 (297)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHHTTC---EEEEEEE
T ss_pred             cCCCEEEEECCCCCCChHHHHHHHHHHCCC---eEEEeec
Confidence            578999999999  9999999999999987   6888765

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=97.35  E-value=0.00043  Score=52.26  Aligned_cols=39  Identities=8%  Similarity=0.092  Sum_probs=34.3

Q ss_pred             hcCCeEEEEcCCC--hHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTG--FMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatG--fIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++||+++||||+|  =||..++++|++.|.   +|++..|+...
T Consensus         4 l~gK~alVTGaa~~~GIG~aiA~~la~~Ga---~Vvi~~r~~~~   44 (256)
T 4fs3_A            4 LENKTYVIMGIANKRSIAFGVAKVLDQLGA---KLVFTYRKERS   44 (256)
T ss_dssp             CTTCEEEEECCCSTTCHHHHHHHHHHHTTC---EEEEEESSGGG
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCC---EEEEEECCHHH
Confidence            6899999999986  599999999999997   79999997543

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=97.33  E-value=0.00056  Score=52.59  Aligned_cols=39  Identities=23%  Similarity=0.323  Sum_probs=35.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++||+++||||++=||..+++.|++.|.   +|++..|+...
T Consensus         5 L~gKvalVTGas~GIG~aia~~la~~Ga---~Vv~~~r~~~~   43 (258)
T 4gkb_A            5 LQDKVVIVTGGASGIGGAISMRLAEERA---IPVVFARHAPD   43 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEECCccc
Confidence            6899999999999999999999999987   79999998655

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=97.31  E-value=0.00032  Score=53.81  Aligned_cols=37  Identities=22%  Similarity=0.171  Sum_probs=33.6

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++||||+|.+|.+++.+|++.|.   +|+++.|+.
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~---~V~i~~R~~  153 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGA---EVVLCGRKL  153 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcC---EEEEEECCH
Confidence            5789999999999999999999999986   699999974

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=97.28  E-value=0.00013  Score=57.06  Aligned_cols=35  Identities=17%  Similarity=0.225  Sum_probs=30.1

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ++++|+||||+|+||.+++++|++.|.   +|+++.|+
T Consensus         1 ~~k~vlVTGas~GIG~ala~~L~~~G~---~v~~v~r~   35 (327)
T 1jtv_A            1 ARTVVLITGCSSGIGLHLAVRLASDPS---QSFKVYAT   35 (327)
T ss_dssp             CCEEEEESCCSSHHHHHHHHHHHTCTT---CCEEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC---ceEEEEee
Confidence            368899999999999999999999987   46666664

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.25  E-value=0.00044  Score=53.21  Aligned_cols=38  Identities=16%  Similarity=0.229  Sum_probs=34.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++||+++||||++=||..+++.|++.|.   +|++..|+..
T Consensus         5 L~gKvalVTGas~GIG~aiA~~la~~Ga---~Vv~~~~~~~   42 (254)
T 4fn4_A            5 LKNKVVIVTGAGSGIGRAIAKKFALNDS---IVVAVELLED   42 (254)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEECCHH
Confidence            6899999999999999999999999987   7999999753

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=97.21  E-value=0.00046  Score=53.00  Aligned_cols=38  Identities=21%  Similarity=0.282  Sum_probs=34.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++||+++||||++=||..+++.|++.|.   +|++..|+..
T Consensus         9 L~GK~alVTGas~GIG~aia~~la~~Ga---~V~~~~r~~~   46 (261)
T 4h15_A            9 LRGKRALITAGTKGAGAATVSLFLELGA---QVLTTARARP   46 (261)
T ss_dssp             CTTCEEEESCCSSHHHHHHHHHHHHTTC---EEEEEESSCC
T ss_pred             CCCCEEEEeccCcHHHHHHHHHHHHcCC---EEEEEECCch
Confidence            5899999999999999999999999998   7999999643

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=97.20  E-value=0.00042  Score=53.46  Aligned_cols=36  Identities=25%  Similarity=0.299  Sum_probs=32.2

Q ss_pred             hcCCeEEEEcC--CChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGG--TGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGa--tGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +++|+++||||  +|.||.+++++|++.|.   +|+++.|+
T Consensus         7 l~gk~~lVTGa~~s~GIG~aia~~la~~G~---~Vv~~~r~   44 (315)
T 2o2s_A            7 LRGQTAFVAGVADSHGYGWAIAKHLASAGA---RVALGTWP   44 (315)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHTTTC---EEEEEECH
T ss_pred             CCCCEEEEeCCCCCCChHHHHHHHHHHCCC---EEEEEecc
Confidence            57899999999  89999999999999987   78888764

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=97.18  E-value=0.0005  Score=53.00  Aligned_cols=36  Identities=22%  Similarity=0.275  Sum_probs=32.0

Q ss_pred             hcCCeEEEEcC--CChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGG--TGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGa--tGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +++|+++||||  +|.||.+++++|++.|.   +|+++.|+
T Consensus         7 l~~k~~lVTGa~~s~GIG~aia~~la~~G~---~Vv~~~r~   44 (319)
T 2ptg_A            7 LRGKTAFVAGVADSNGYGWAICKLLRAAGA---RVLVGTWP   44 (319)
T ss_dssp             CTTCEEEEECCCCTTSHHHHHHHHHHHTTC---EEEEEECH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHCCC---EEEEEecc
Confidence            57899999999  89999999999999987   78888763

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=97.17  E-value=0.00032  Score=54.04  Aligned_cols=37  Identities=22%  Similarity=0.165  Sum_probs=34.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++||+++||||++-||..+++.|++.|.   +|++..|+.
T Consensus         7 L~gKvalVTGas~GIG~aia~~la~~Ga---~Vvi~~~~~   43 (255)
T 4g81_D            7 LTGKTALVTGSARGLGFAYAEGLAAAGA---RVILNDIRA   43 (255)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEECCSCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            6899999999999999999999999997   799998864

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=97.16  E-value=0.00045  Score=56.86  Aligned_cols=39  Identities=15%  Similarity=0.138  Sum_probs=34.6

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ..+++++++||||+|.||.+++++|++.|.   +|+++.|+.
T Consensus       209 ~~l~gk~~LVTGgsgGIG~aiA~~La~~Ga---~Vvl~~r~~  247 (454)
T 3u0b_A          209 KPLDGKVAVVTGAARGIGATIAEVFARDGA---TVVAIDVDG  247 (454)
T ss_dssp             STTTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEECGG
T ss_pred             cCCCCCEEEEeCCchHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            346889999999999999999999999987   788888864

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=97.16  E-value=0.00075  Score=56.49  Aligned_cols=36  Identities=36%  Similarity=0.484  Sum_probs=32.2

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++||||+|.||.+++++|++.|..  +|+++.|+.
T Consensus       239 ~~~vLITGgsgGIG~alA~~La~~Ga~--~vvl~~R~~  274 (496)
T 3mje_A          239 HGSVLVTGGTGGIGGRVARRLAEQGAA--HLVLTSRRG  274 (496)
T ss_dssp             CSEEEEETCSSHHHHHHHHHHHHTTCS--EEEEEESSG
T ss_pred             CCEEEEECCCCchHHHHHHHHHHCCCc--EEEEEeCCC
Confidence            489999999999999999999999874  788999964

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=96.99  E-value=0.0008  Score=57.22  Aligned_cols=39  Identities=10%  Similarity=-0.006  Sum_probs=32.3

Q ss_pred             hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      ....+++|+++||||+|.||.+++++|++.|.   +|+++.|
T Consensus        13 ~~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga---~Vv~~~r   51 (613)
T 3oml_A           13 GKLRYDGRVAVVTGAGAGLGREYALLFAERGA---KVVVNDL   51 (613)
T ss_dssp             --CCCTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEC--
T ss_pred             cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeC
Confidence            33457899999999999999999999999987   7888877

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=96.98  E-value=0.0012  Score=50.65  Aligned_cols=35  Identities=26%  Similarity=0.339  Sum_probs=32.2

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +|+|+||||++-||..+++.|++.|.   +|++..|+.
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga---~V~~~~~~~   36 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGD---KVCFIDIDE   36 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            58999999999999999999999997   799999863

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=96.88  E-value=0.0018  Score=49.74  Aligned_cols=36  Identities=36%  Similarity=0.591  Sum_probs=32.1

Q ss_pred             cCCeEEEEcC----------------CChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGG----------------TGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGa----------------tGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +||+|+||||                +|.+|.++++++++.|.   +|+++.|+.
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga---~V~lv~~~~   53 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGY---EVCLITTKR   53 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTC---EEEEEECTT
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            5899999999                99999999999999998   788888853

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=96.87  E-value=0.0012  Score=50.73  Aligned_cols=38  Identities=18%  Similarity=0.215  Sum_probs=34.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++||+++||||++=||..+++.|++.|.   +|++..|+..
T Consensus         7 L~GKvalVTGas~GIG~aiA~~la~~Ga---~Vvi~~r~~~   44 (247)
T 4hp8_A            7 LEGRKALVTGANTGLGQAIAVGLAAAGA---EVVCAARRAP   44 (247)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSCC
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHcCC---EEEEEeCCcH
Confidence            6899999999999999999999999997   7999999753

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=96.75  E-value=0.002  Score=53.98  Aligned_cols=40  Identities=23%  Similarity=0.219  Sum_probs=33.9

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEE-ecCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLL-VRPK  102 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l-~R~~  102 (121)
                      .+-.+++++||||+|.||.+++++|++.|..  .|+++ .|+.
T Consensus       247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~~--~vvl~~~R~~  287 (525)
T 3qp9_A          247 WWQADGTVLVTGAEEPAAAEAARRLARDGAG--HLLLHTTPSG  287 (525)
T ss_dssp             SSCTTSEEEESSTTSHHHHHHHHHHHHHTCC--EEEEEECCCC
T ss_pred             eecCCCEEEEECCCCcHHHHHHHHHHHcCCC--EEEEEeCCCC
Confidence            3456899999999999999999999999873  57777 8874

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=96.68  E-value=0.0028  Score=48.36  Aligned_cols=36  Identities=22%  Similarity=0.442  Sum_probs=32.0

Q ss_pred             hcCCeEEEEcC----------------CChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGG----------------TGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGa----------------tGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +.|++|+||||                +|-+|..+++++++.|.   +|+++.|+
T Consensus         6 l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga---~V~l~~~~   57 (226)
T 1u7z_A            6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGA---NVTLVSGP   57 (226)
T ss_dssp             TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTC---EEEEEECS
T ss_pred             CCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCC---EEEEEECC
Confidence            57999999999                69999999999999998   68777764

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.62  E-value=0.0038  Score=41.47  Aligned_cols=34  Identities=24%  Similarity=0.250  Sum_probs=29.2

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+|+|+ |++|+.+++.|.+.+.   +|+++.|++
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~---~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGH---DIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC---eEEEEECCH
Confidence            478999987 9999999999999876   788888864

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=96.61  E-value=0.00093  Score=45.49  Aligned_cols=46  Identities=20%  Similarity=0.226  Sum_probs=26.2

Q ss_pred             ccCCceeeccchhhhhhcccc------cCChhhhhCCCCCCCCCCCCCCCCCcchhhhhc
Q psy3445          11 SSTKYKVKPLEITEDIVNSKY------YKDPLQLLGEKNFGRPRKIPKDEIGTPIQEFFR   64 (121)
Q Consensus        11 ~~~~~~~~~~p~~~~~i~~~~------~~~~~dLl~r~~~~~~~~~~~~~~~~~i~~~~~   64 (121)
                      .+.++++.++|.+++++.+..      ++++||||||++     ..+   |...+..+++
T Consensus        89 ~~~gv~v~~vP~~~~~~~~~~~~~~l~~v~iedlLgR~~-----i~l---d~~~i~~~~~  140 (141)
T 3nkl_A           89 AKLHVEVLTIPNLDDLVNGKLSIGQLKEVSIDDLLGRVA-----VTP---QAELMEANIK  140 (141)
T ss_dssp             HTTTCEEEECCCHHHHHTTSSCTTCCEECCHHHHHC------------------------
T ss_pred             HHcCCeEEECCCHHHHhCCCcccccCCCCCHHHcCCCCC-----CCC---CHHHHHHHhc
Confidence            458999999999999997643      789999999962     333   4445555544

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.56  E-value=0.0025  Score=42.44  Aligned_cols=35  Identities=20%  Similarity=0.232  Sum_probs=29.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +++++|+|+|+ |.+|+.+++.|.+.+.   +|+++.|+
T Consensus         4 ~~~~~v~I~G~-G~iG~~~a~~l~~~g~---~v~~~d~~   38 (144)
T 2hmt_A            4 IKNKQFAVIGL-GRFGGSIVKELHRMGH---EVLAVDIN   38 (144)
T ss_dssp             --CCSEEEECC-SHHHHHHHHHHHHTTC---CCEEEESC
T ss_pred             CcCCcEEEECC-CHHHHHHHHHHHHCCC---EEEEEeCC
Confidence            35678999998 9999999999999876   57888875

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=96.42  E-value=0.0047  Score=44.50  Aligned_cols=35  Identities=31%  Similarity=0.322  Sum_probs=30.8

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++|+|+||+|++|+.++..|++.++   +|+++.|+..
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~---~V~~~~r~~~   35 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGH---EIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC---EEEEEESSHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            4799999999999999999999876   7999999743

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=96.40  E-value=0.003  Score=49.78  Aligned_cols=37  Identities=16%  Similarity=0.095  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++|+||||+||+|+.++..|+..+. +.+|+++++++
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~-~~ev~l~Di~~   44 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPL-VSVLHLYDVVN   44 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTT-EEEEEEEESSS
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEeCCC
Confidence            46899999999999999999988753 34788888765

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.38  E-value=0.0048  Score=41.74  Aligned_cols=35  Identities=23%  Similarity=0.184  Sum_probs=30.0

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ..++|+|+|+ |.+|+.+++.|.+.|.   +|+++.|++
T Consensus         5 ~~~~v~I~G~-G~iG~~la~~L~~~g~---~V~~id~~~   39 (141)
T 3llv_A            5 GRYEYIVIGS-EAAGVGLVRELTAAGK---KVLAVDKSK   39 (141)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTC---CEEEEESCH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC---eEEEEECCH
Confidence            3568999998 9999999999999987   688999864

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=96.34  E-value=0.0048  Score=48.25  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=28.7

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      ++|+||||+||+|++++..|+..+. ..++.++++
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~-~~el~L~Di   34 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPF-MKDLVLIGR   34 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTT-CCEEEEEEC
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCC-CCEEEEEcC
Confidence            5799999999999999999998754 346887777

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.24  E-value=0.0073  Score=41.81  Aligned_cols=41  Identities=7%  Similarity=0.168  Sum_probs=32.1

Q ss_pred             hhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          59 IQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        59 i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++....+++|+|+|+ |.+|..+++.|.+.+.   +|+++.|++.
T Consensus        13 ~~~~~~~~~v~IiG~-G~iG~~la~~L~~~g~---~V~vid~~~~   53 (155)
T 2g1u_A           13 MSKKQKSKYIVIFGC-GRLGSLIANLASSSGH---SVVVVDKNEY   53 (155)
T ss_dssp             ----CCCCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCGG
T ss_pred             hhcccCCCcEEEECC-CHHHHHHHHHHHhCCC---eEEEEECCHH
Confidence            344556789999996 9999999999999876   7999988654

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=96.24  E-value=0.0043  Score=48.85  Aligned_cols=37  Identities=24%  Similarity=0.199  Sum_probs=29.7

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCC----CccEEEEEecC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIP----HLKHIYLLVRP  101 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~----~~~~V~~l~R~  101 (121)
                      .++|+||||+||+|++++..|+..+.    .+.+|+++++.
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~   45 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIP   45 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCC
Confidence            46899999999999999999988753    11368887775

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.12  E-value=0.0076  Score=42.93  Aligned_cols=36  Identities=19%  Similarity=0.170  Sum_probs=31.7

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+|+||+|-+|..++..+...|.   +|++..|+.
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~---~V~~~~~~~   73 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGA---RIYTTAGSD   73 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTC---EEEEEESSH
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            478999999999999999999988876   788888864

>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...

Probab=96.08  E-value=0.0087  Score=46.40  Aligned_cols=35  Identities=17%  Similarity=0.204  Sum_probs=29.0

Q ss_pred             cCCeEEEEcCCC--hHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          64 RDASVFVTGGTG--FMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        64 ~~~~VlVTGatG--fIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ++|+++||||++  -||.+++++|++.|.   +|++..|+
T Consensus         1 ~~k~~lITGas~~~GIG~aiA~~la~~G~---~Vv~~~~~   37 (329)
T 3lt0_A            1 NEDICFIAGIGDTNGYGWGIAKELSKRNV---KIIFGIWP   37 (329)
T ss_dssp             CCCEEEEECCSSSSSHHHHHHHHHHHTTC---EEEEEECH
T ss_pred             CCcEEEEECCCCCCchHHHHHHHHHHCCC---EEEEEecC
Confidence            368999999875  899999999999987   67765543

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=96.03  E-value=0.0089  Score=46.55  Aligned_cols=34  Identities=15%  Similarity=0.100  Sum_probs=28.7

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      ++|+||||+||+|+.++..|+..+. ..++.++++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~-~~el~L~Di   34 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDI-ADEVVFVDI   34 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-CSEEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEcC
Confidence            5899999999999999999988754 346887777

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.87  E-value=0.012  Score=40.44  Aligned_cols=35  Identities=11%  Similarity=0.143  Sum_probs=29.8

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ..++|+|+|+ |.+|+++++.|.+.+.   +|+++.|+.
T Consensus         2 ~~~~vlI~G~-G~vG~~la~~L~~~g~---~V~vid~~~   36 (153)
T 1id1_A            2 RKDHFIVCGH-SILAINTILQLNQRGQ---NVTVISNLP   36 (153)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHHTTC---CEEEEECCC
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCC---CEEEEECCC
Confidence            3567999986 9999999999999887   688888863

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.40  E-value=0.019  Score=47.26  Aligned_cols=35  Identities=20%  Similarity=0.308  Sum_probs=30.2

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++++|+|+| +|++|+++++.|++.+.   +|++..|+.
T Consensus         2 ~~k~VlViG-aG~iG~~ia~~L~~~G~---~V~v~~R~~   36 (450)
T 1ff9_A            2 ATKSVLMLG-SGFVTRPTLDVLTDSGI---KVTVACRTL   36 (450)
T ss_dssp             CCCEEEEEC-CSTTHHHHHHHHHTTTC---EEEEEESSH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCcC---EEEEEECCH
Confidence            468899998 79999999999998765   688889864

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.36  E-value=0.026  Score=43.86  Aligned_cols=38  Identities=13%  Similarity=0.070  Sum_probs=32.7

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+++|+|+||+|-+|..++..+...|.   +|+++.|+..+
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga---~V~~~~~~~~~  206 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGY---RVLGIDGGEGK  206 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECSTTH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC---cEEEEcCCHHH
Confidence            478999999999999999998888876   79999987543

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=95.25  E-value=0.022  Score=45.61  Aligned_cols=41  Identities=10%  Similarity=0.227  Sum_probs=34.7

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +|+.+++|.|+||+|++|+.++..++..+. ..+|+++++..
T Consensus         4 ~~~~~~KV~ViGaaG~VG~~~a~~l~~~g~-~~evvLiDi~~   44 (343)
T 3fi9_A            4 SYLTEEKLTIVGAAGMIGSNMAQTAAMMRL-TPNLCLYDPFA   44 (343)
T ss_dssp             CCSCSSEEEEETTTSHHHHHHHHHHHHTTC-CSCEEEECSCH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhcCC-CCEEEEEeCCc
Confidence            577889999999999999999999998874 23799988864

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=95.24  E-value=0.028  Score=47.74  Aligned_cols=37  Identities=22%  Similarity=0.284  Sum_probs=32.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+++||||++=||..++++|++.|.   +|++..|+.
T Consensus         6 l~gkvalVTGas~GIG~a~A~~la~~Ga---~Vv~~~~~~   42 (604)
T 2et6_A            6 FKDKVVIITGAGGGLGKYYSLEFAKLGA---KVVVNDLGG   42 (604)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEECC--
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCC---EEEEEeCCc
Confidence            5789999999999999999999999987   788887753

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=95.23  E-value=0.034  Score=45.93  Aligned_cols=38  Identities=16%  Similarity=-0.019  Sum_probs=33.4

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHH-hCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLR-AIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~-~~~~~~~V~~l~R~~~~  104 (121)
                      .+|+++||||++=||..+++.|++ .|.   +|++..|+...
T Consensus        60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA---~Vv~~~r~~~~   98 (422)
T 3s8m_A           60 GPKKVLVIGASSGYGLASRITAAFGFGA---DTLGVFFEKPG   98 (422)
T ss_dssp             SCSEEEEESCSSHHHHHHHHHHHHHHCC---EEEEEECCCCC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhCCC---EEEEEeCCchh
Confidence            478999999999999999999999 987   78888886543

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=95.20  E-value=0.032  Score=48.91  Aligned_cols=38  Identities=29%  Similarity=0.417  Sum_probs=32.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHH-HhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLL-RAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll-~~~~~~~~V~~l~R~~  102 (121)
                      -.+++++||||+|-||..+++.|+ +.|..  .|+++.|+.
T Consensus       528 ~~~~~~lItGg~~GlG~aiA~~la~~~Ga~--~vvl~~R~~  566 (795)
T 3slk_A          528 DAAGTVLVTGGTGALGAEVARHLVIERGVR--NLVLVSRRG  566 (795)
T ss_dssp             CTTSEEEEETTTSHHHHHHHHHHHHTSSCC--EEEEEESSG
T ss_pred             ccccceeeccCCCCcHHHHHHHHHHHcCCc--EEEEeccCc
Confidence            357899999999999999999999 67763  799999974

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=95.18  E-value=0.038  Score=45.54  Aligned_cols=39  Identities=13%  Similarity=-0.033  Sum_probs=33.6

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHH-hCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLR-AIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~-~~~~~~~V~~l~R~~~~  104 (121)
                      ..+|+++||||++=||..+++.|++ .|.   +|+++.|+...
T Consensus        45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA---~Vv~~~~~~~~   84 (405)
T 3zu3_A           45 NGPKRVLVIGASTGYGLAARITAAFGCGA---DTLGVFFERPG   84 (405)
T ss_dssp             TCCSEEEEESCSSHHHHHHHHHHHHHHCC---EEEEEECCCCC
T ss_pred             CCCCEEEEeCcchHHHHHHHHHHHHhcCC---EEEEEeCCchh
Confidence            3578999999999999999999999 987   78888886543

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=95.14  E-value=0.018  Score=54.61  Aligned_cols=37  Identities=24%  Similarity=0.379  Sum_probs=31.9

Q ss_pred             hcCCeEEEEcCCCh-HHHHHHHHHHHhCCCccEEEEE-ecCC
Q psy3445          63 FRDASVFVTGGTGF-MGKILVEKLLRAIPHLKHIYLL-VRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGf-IGs~ll~~Ll~~~~~~~~V~~l-~R~~  102 (121)
                      +++++++||||+|. ||.+++++|++.|.   +|+++ .|+.
T Consensus       474 L~GKvALVTGASgGGIGrAIAr~LA~~GA---~VVL~~~R~~  512 (1688)
T 2pff_A          474 FKDKYVLITGAGKGSIGAEVLQGLLQGGA---KVVVTTSRFS  512 (1688)
T ss_dssp             CCSCCEEECSCSSSSTHHHHHHHHHHHTC---EEEEEESSCS
T ss_pred             cCCCEEEEECCChHHHHHHHHHHHHHCcC---EEEEEeCCCH
Confidence            56899999999998 99999999999987   67777 4654

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=95.13  E-value=0.025  Score=44.30  Aligned_cols=36  Identities=25%  Similarity=0.217  Sum_probs=30.6

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++|.|+||+|++|..++..|+..+. +.+|.++++++
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~-~~ev~L~Di~~   36 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPL-VSRLTLYDIAH   36 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTT-CSEEEEEESSS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC-CcEEEEEeCCc
Confidence            5899999999999999999887652 34899999976

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=95.12  E-value=0.026  Score=54.13  Aligned_cols=37  Identities=24%  Similarity=0.379  Sum_probs=32.0

Q ss_pred             hcCCeEEEEcCCCh-HHHHHHHHHHHhCCCccEEEEE-ecCC
Q psy3445          63 FRDASVFVTGGTGF-MGKILVEKLLRAIPHLKHIYLL-VRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGf-IGs~ll~~Ll~~~~~~~~V~~l-~R~~  102 (121)
                      +++++++||||+|. ||.++++.|++.|.   +|+++ .|+.
T Consensus       673 l~gKvaLVTGASsGgIG~aIA~~La~~GA---~Vvl~~~R~~  711 (1887)
T 2uv8_A          673 FKDKYVLITGAGKGSIGAEVLQGLLQGGA---KVVVTTSRFS  711 (1887)
T ss_dssp             CTTCEEEEESCCSSSHHHHHHHHHHHTTC---EEEEEESSCC
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHHCCC---EEEEEecCCH
Confidence            57899999999998 99999999999987   68877 4554

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=95.11  E-value=0.033  Score=42.85  Aligned_cols=36  Identities=11%  Similarity=0.093  Sum_probs=31.5

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+||||+|-+|..++..+...|.   +|++..|+.
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~---~V~~~~~~~  180 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGC---KVVGAAGSD  180 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            468999999999999999999888876   799888864

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.04  E-value=0.019  Score=44.07  Aligned_cols=36  Identities=14%  Similarity=0.056  Sum_probs=31.9

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+|+||+|-+|..++..+...|.   +|++..|+.
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~---~V~~~~~~~  175 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGA---KLIGTVGTA  175 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTC---EEEEEESSH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            468999999999999999999988876   799998864

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=95.03  E-value=0.023  Score=48.26  Aligned_cols=37  Identities=16%  Similarity=0.155  Sum_probs=32.7

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+++|+++||||++=||..++++|++.|.   +|++..|.
T Consensus       319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga---~Vv~~~~~  355 (604)
T 2et6_A          319 SLKDKVVLITGAGAGLGKEYAKWFAKYGA---KVVVNDFK  355 (604)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEECSS
T ss_pred             ccCCCeEEEECcchHHHHHHHHHHHHCCC---EEEEEeCc
Confidence            36789999999999999999999999987   68877763

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=95.00  E-value=0.033  Score=44.22  Aligned_cols=34  Identities=35%  Similarity=0.351  Sum_probs=26.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEe
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLV   99 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~   99 (121)
                      ++|+|.||||++|+.+++.|+++++...+++++.
T Consensus         7 ~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~   40 (340)
T 2hjs_A            7 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLA   40 (340)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEE
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEe
Confidence            6899999999999999999986553333555554

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=94.95  E-value=0.033  Score=53.48  Aligned_cols=35  Identities=17%  Similarity=0.317  Sum_probs=31.1

Q ss_pred             hcCCeEEEEcCCCh-HHHHHHHHHHHhCCCccEEEEEec
Q psy3445          63 FRDASVFVTGGTGF-MGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        63 ~~~~~VlVTGatGf-IGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      +++++++||||+|. ||.++++.|++.|.   +|+++.+
T Consensus       650 L~gKvaLVTGASgGgIG~aIAr~LA~~GA---~VVl~~~  685 (1878)
T 2uv9_A          650 FQGKHALMTGAGAGSIGAEVLQGLLSGGA---KVIVTTS  685 (1878)
T ss_dssp             CTTCEEEEESCCTTSHHHHHHHHHHHTTC---EEEEEES
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHHCCC---EEEEEec
Confidence            57899999999998 99999999999987   6888753

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=94.93  E-value=0.019  Score=44.25  Aligned_cols=36  Identities=19%  Similarity=0.174  Sum_probs=31.7

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+|+||+|-+|..++..+...|.   +|++..|+.
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~---~Vi~~~~~~  180 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGA---TVIGTVSTE  180 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            468999999999999999999888876   799999874

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=94.79  E-value=0.021  Score=45.80  Aligned_cols=35  Identities=26%  Similarity=0.344  Sum_probs=27.5

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCC----CccEEEEEec
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIP----HLKHIYLLVR  100 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~----~~~~V~~l~R  100 (121)
                      .++|+|.||||++|+.+++.|+++.+    . .+|+++.+
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~-~ei~~l~s   47 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGR-LRIGALTA   47 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTS-EEEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCcc-EEEEEEEC
Confidence            36899999999999999999998630    3 25666654

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=94.74  E-value=0.037  Score=45.38  Aligned_cols=39  Identities=10%  Similarity=0.043  Sum_probs=33.5

Q ss_pred             hcCCeEEEEcCCChHHHH--HHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKI--LVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~--ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ..+|+++||||++=||..  ++.++++.|.   +|+++.|+...
T Consensus        58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga---~Vi~~~r~~~~   98 (418)
T 4eue_A           58 RGPKKVLIVGASSGFGLATRISVAFGGPEA---HTIGVSYETGA   98 (418)
T ss_dssp             CCCSEEEEESCSSHHHHHHHHHHHHSSSCC---EEEEEECCCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHHhCCC---EEEEEecCcch
Confidence            568999999999999999  9999988887   78888886543

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=94.65  E-value=0.047  Score=43.71  Aligned_cols=37  Identities=24%  Similarity=0.491  Sum_probs=28.6

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ++..+|+|.||+|++|..+++.|.++ |.+ ++.++.+.
T Consensus        14 M~~~kV~IiGAtG~iG~~llr~L~~~-p~~-elvai~~~   50 (359)
T 1xyg_A           14 EKDIRIGLLGASGYTGAEIVRLLANH-PHF-QVTLMTAD   50 (359)
T ss_dssp             -CCEEEEEECCSSHHHHHHHHHHHTC-SSE-EEEEEBCS
T ss_pred             ccCcEEEEECcCCHHHHHHHHHHHcC-CCc-EEEEEeCc
Confidence            34568999999999999999999886 543 56666553

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=94.62  E-value=0.044  Score=44.20  Aligned_cols=38  Identities=26%  Similarity=0.338  Sum_probs=30.2

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++|+|+|| |++|+.+++.|++.+.-..+|++.+|+..+
T Consensus         2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~   39 (405)
T 4ina_A            2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSK   39 (405)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHH
Confidence            57999999 899999999999875311379999997543

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=94.58  E-value=0.05  Score=42.29  Aligned_cols=38  Identities=16%  Similarity=0.220  Sum_probs=32.5

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.+|+|+||+|-+|...+..+...|.   +|++..++..+
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga---~Vi~~~~~~~~  196 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGA---KVIAVVNRTAA  196 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSGGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCC---EEEEEeCCHHH
Confidence            478999999999999999988888876   79999987554

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=94.58  E-value=0.032  Score=43.57  Aligned_cols=36  Identities=11%  Similarity=0.051  Sum_probs=31.6

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+|+||+|-+|..++..+...|.   +|++..|+.
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga---~Vi~~~~~~  197 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGA---IPLVTAGSQ  197 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            468999999999999999998888876   799999864

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=94.57  E-value=0.061  Score=42.94  Aligned_cols=33  Identities=30%  Similarity=0.569  Sum_probs=26.3

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      ++|+|.||||++|..+++.|.++ |++ ++..+..
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~-p~~-el~~l~s   37 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRH-PHM-NITALTV   37 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHC-TTE-EEEEEEE
T ss_pred             eEEEEECCCChHHHHHHHHHHhC-CCC-cEEEEEe
Confidence            58999999999999999988876 554 5555543

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=94.53  E-value=0.11  Score=41.04  Aligned_cols=37  Identities=14%  Similarity=0.104  Sum_probs=32.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++|+|| |-+|+.++..|++.|.  .+|++..|+.
T Consensus       152 l~gk~~lVlGa-GG~g~aia~~L~~~Ga--~~V~i~nR~~  188 (315)
T 3tnl_A          152 IIGKKMTICGA-GGAATAICIQAALDGV--KEISIFNRKD  188 (315)
T ss_dssp             CTTSEEEEECC-SHHHHHHHHHHHHTTC--SEEEEEECSS
T ss_pred             ccCCEEEEECC-ChHHHHHHHHHHHCCC--CEEEEEECCC
Confidence            46899999998 6789999999999876  3899999984

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.52  E-value=0.036  Score=40.26  Aligned_cols=34  Identities=15%  Similarity=0.285  Sum_probs=29.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+|+|+|+ |.+|+++++.|.+.+.   .|+++.+++.
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~---~v~vid~~~~   34 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKY---GVVIINKDRE   34 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTC---CEEEEESCHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC---eEEEEECCHH
Confidence            57999996 9999999999999887   6888888743

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=94.48  E-value=0.052  Score=41.86  Aligned_cols=36  Identities=14%  Similarity=0.146  Sum_probs=31.3

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+|+||+|-+|..++..+...|.   +|++..|+.
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~---~V~~~~~~~  190 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGC---YVVGSAGSK  190 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            468999999999999999988888875   799998864

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=94.44  E-value=0.049  Score=41.39  Aligned_cols=38  Identities=13%  Similarity=0.118  Sum_probs=32.3

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.+|+|+||+|-+|...+..+...|.   +|++..|+..+
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga---~Vi~~~~~~~~  162 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGL---RVLAAASRPEK  162 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTC---EEEEEESSGGG
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHHH
Confidence            478999999999999999988777765   79999997554

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=94.36  E-value=0.08  Score=40.92  Aligned_cols=38  Identities=13%  Similarity=0.167  Sum_probs=32.6

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.+|+|+||+|-+|...+..+...|.   +|++..|+..+
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga---~Vi~~~~~~~~  181 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNF---RLIAVTRNNKH  181 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTC---EEEEEESSSTT
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCC---EEEEEeCCHHH
Confidence            468999999999999999988777876   79999987655

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=94.35  E-value=0.071  Score=41.69  Aligned_cols=36  Identities=19%  Similarity=0.097  Sum_probs=31.4

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+|+||+|-+|..++..+...|.   +|++..|+.
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga---~Vi~~~~~~  205 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGL---KILGTAGTE  205 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCh
Confidence            468999999999999999998888876   799998864

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=94.35  E-value=0.057  Score=42.81  Aligned_cols=33  Identities=30%  Similarity=0.524  Sum_probs=26.7

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhC-CCccEEEEEe
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAI-PHLKHIYLLV   99 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~-~~~~~V~~l~   99 (121)
                      ++|+|.||||++|..+++.|++++ |. .+++++.
T Consensus         4 ~kV~I~GAtG~iG~~llr~L~~~~~p~-~elv~i~   37 (336)
T 2r00_A            4 FNVAIFGATGAVGETMLEVLQEREFPV-DELFLLA   37 (336)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCE-EEEEEEE
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCCC-EEEEEEE
Confidence            689999999999999999998874 43 3566665

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=94.33  E-value=0.063  Score=43.43  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=26.0

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEe
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLV   99 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~   99 (121)
                      .+|+|.||||++|..+++.|.+++....++..+.
T Consensus         3 ~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~a   36 (366)
T 3pwk_A            3 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLA   36 (366)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEE
T ss_pred             cEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEE
Confidence            5899999999999999998887643333555554

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=94.31  E-value=0.059  Score=41.45  Aligned_cols=36  Identities=11%  Similarity=0.122  Sum_probs=31.2

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+|+||+|-+|..++..+...|.   +|++..|+.
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga---~Vi~~~~~~  184 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGC---RVVGIAGGA  184 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            478999999999999999988887776   799998864

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=94.31  E-value=0.044  Score=44.09  Aligned_cols=40  Identities=25%  Similarity=0.320  Sum_probs=28.0

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEE-ecCCCCcc
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLL-VRPKKGKA  106 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l-~R~~~~~~  106 (121)
                      ..+|.|.||||++|.++++.|.++ |.+ ++..+ .++..+..
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~h-P~~-el~~l~S~~saGk~   47 (359)
T 4dpk_A            7 TLKAAILGATGLVGIEYVRMLSNH-PYI-KPAYLAGKGSVGKP   47 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTC-SSE-EEEEEEESTTTTSB
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhC-CCc-eEEEEECchhcCCC
Confidence            358999999999999999966654 654 44444 44444433

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=94.31  E-value=0.044  Score=44.09  Aligned_cols=40  Identities=25%  Similarity=0.320  Sum_probs=28.0

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEE-ecCCCCcc
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLL-VRPKKGKA  106 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l-~R~~~~~~  106 (121)
                      ..+|.|.||||++|.++++.|.++ |.+ ++..+ .++..+..
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~h-P~~-el~~l~S~~saGk~   47 (359)
T 4dpl_A            7 TLKAAILGATGLVGIEYVRMLSNH-PYI-KPAYLAGKGSVGKP   47 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTC-SSE-EEEEEEESTTTTSB
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhC-CCc-eEEEEECchhcCCC
Confidence            358999999999999999966654 654 44444 44444433

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=94.30  E-value=0.036  Score=45.96  Aligned_cols=42  Identities=17%  Similarity=0.284  Sum_probs=30.1

Q ss_pred             chhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          58 PIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        58 ~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+...+++++|+|+|| |++|+.+++.|++.+.  .+|++..|+.
T Consensus        16 ~~~~~l~~k~VlIiGA-GgiG~aia~~L~~~~g--~~V~v~~R~~   57 (467)
T 2axq_A           16 HIEGRHMGKNVLLLGS-GFVAQPVIDTLAANDD--INVTVACRTL   57 (467)
T ss_dssp             -------CEEEEEECC-STTHHHHHHHHHTSTT--EEEEEEESSH
T ss_pred             ccccCCCCCEEEEECC-hHHHHHHHHHHHhCCC--CeEEEEECCH
Confidence            4555567889999998 9999999999998732  2799999974

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=94.20  E-value=0.041  Score=42.63  Aligned_cols=36  Identities=6%  Similarity=-0.063  Sum_probs=31.3

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+|+||+|-+|..++..+...|.   +|++..|+.
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~---~Vi~~~~~~  201 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGA---RVIATAGSE  201 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            468999999999999999998888876   799998864

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=94.14  E-value=0.066  Score=42.90  Aligned_cols=35  Identities=17%  Similarity=0.209  Sum_probs=26.2

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEe
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLV   99 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~   99 (121)
                      +.+|.|.||||++|..+++.|..+.....++..+.
T Consensus         1 ~~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~   35 (344)
T 3tz6_A            1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFA   35 (344)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCceEEEEEE
Confidence            46899999999999999998777642223555554

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=94.12  E-value=0.075  Score=40.34  Aligned_cols=37  Identities=14%  Similarity=0.093  Sum_probs=31.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++|+|+ |-+|..++..|++.|.   +|++..|+..
T Consensus       117 l~~k~vlViGa-Gg~g~a~a~~L~~~G~---~V~v~~R~~~  153 (271)
T 1nyt_A          117 RPGLRILLIGA-GGASRGVLLPLLSLDC---AVTITNRTVS  153 (271)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSSHH
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHcCC---EEEEEECCHH
Confidence            46799999999 5699999999999984   8999998753

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=94.05  E-value=0.049  Score=41.87  Aligned_cols=37  Identities=8%  Similarity=0.050  Sum_probs=31.7

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+.+|+|+||+|-+|...+..+...|.   +|++..|+..
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga---~Vi~~~~~~~  176 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGA---KLIGTVSSPE  176 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTC---EEEEEESSHH
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            478999999999999999988888876   7999988643

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=93.91  E-value=0.047  Score=43.34  Aligned_cols=34  Identities=29%  Similarity=0.335  Sum_probs=27.8

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ++|+|.||+|++|..+++.|.++ |. .+|.++.|+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~-p~-~ev~~i~~s   42 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADH-PM-FELTALAAS   42 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTC-SS-EEEEEEEEC
T ss_pred             ceEEEECcCCHHHHHHHHHHhcC-CC-CEEEEEEcc
Confidence            58999999999999999998876 44 367777653

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=93.85  E-value=0.078  Score=42.97  Aligned_cols=34  Identities=18%  Similarity=0.340  Sum_probs=24.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCC-ccEEEEEe
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPH-LKHIYLLV   99 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~-~~~V~~l~   99 (121)
                      ++|.|.||||++|.++++.|+...|. ..++..+.
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~s   35 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFS   35 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEe
Confidence            47999999999999999955554342 23555554

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=93.79  E-value=0.058  Score=42.11  Aligned_cols=37  Identities=19%  Similarity=0.260  Sum_probs=31.8

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+.+|+|+||+|-+|...+..+...|.   +|++..|+..
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga---~Vi~~~~~~~  203 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGA---EVYATAGSTG  203 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence            468999999999999999988888876   7999998643

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=93.74  E-value=0.096  Score=40.55  Aligned_cols=39  Identities=15%  Similarity=0.100  Sum_probs=32.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++++++|+|+ |-+|+.++..|++.|.  .+|++..|+..+
T Consensus       125 l~~k~vlVlGa-GG~g~aia~~L~~~G~--~~v~i~~R~~~~  163 (283)
T 3jyo_A          125 AKLDSVVQVGA-GGVGNAVAYALVTHGV--QKLQVADLDTSR  163 (283)
T ss_dssp             CCCSEEEEECC-SHHHHHHHHHHHHTTC--SEEEEECSSHHH
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCC--CEEEEEECCHHH
Confidence            46899999998 6789999999999876  379999998543

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=93.73  E-value=0.029  Score=44.61  Aligned_cols=36  Identities=22%  Similarity=0.236  Sum_probs=28.7

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccE-----EEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKH-----IYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~-----V~~l~R~~  102 (121)
                      ++|+||||+|++|++++..|+..+. +.+     ++++++..
T Consensus         4 ~kV~V~GaaG~VG~~la~~L~~~~~-~~e~~~~~l~L~Di~~   44 (333)
T 5mdh_A            4 IRVLVTGAAGQIAYSLLYSIGNGSV-FGKDQPIILVLLDITP   44 (333)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTT-TCTTCCEEEEEECCGG
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC-ccccCCCEEEEEeCCC
Confidence            6899999999999999999987643 223     77777753

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=93.61  E-value=0.049  Score=41.96  Aligned_cols=36  Identities=19%  Similarity=0.201  Sum_probs=31.0

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+|+|+||+|-+|...+..+...|.   +|++..|+.
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga---~Vi~~~~~~  183 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGA---HTIAVASTD  183 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            468999999999999999988887775   799998864

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=93.59  E-value=0.18  Score=39.75  Aligned_cols=38  Identities=18%  Similarity=0.184  Sum_probs=32.2

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++|+|| |-+|..++..|.+.|.  .+|++..|+..
T Consensus       146 l~gk~~lVlGA-GGaaraia~~L~~~G~--~~v~v~nRt~~  183 (312)
T 3t4e_A          146 MRGKTMVLLGA-GGAATAIGAQAAIEGI--KEIKLFNRKDD  183 (312)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--SEEEEEECSST
T ss_pred             cCCCEEEEECc-CHHHHHHHHHHHHcCC--CEEEEEECCCc
Confidence            45789999998 6689999999999876  48999999843

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=93.52  E-value=0.16  Score=49.84  Aligned_cols=41  Identities=24%  Similarity=0.181  Sum_probs=35.2

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +-.+++++||||+|-||..+++.|++.|..  .|+++.|+...
T Consensus      1881 ~~~~k~~lITGgs~GIG~aia~~la~~Ga~--~vvl~~R~~~~ 1921 (2512)
T 2vz8_A         1881 CPPHKSYVITGGLGGFGLQLAQWLRLRGAQ--KLVLTSRSGIR 1921 (2512)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCC--EEEEECSSCCC
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHHHHCCCC--EEEEEeCCCcc
Confidence            346899999999999999999999999873  68888997654

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=93.52  E-value=0.079  Score=42.10  Aligned_cols=33  Identities=18%  Similarity=0.408  Sum_probs=26.9

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      ++|+|.||||++|..+++.|.++ |.+ +++++.+
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~-p~~-elv~v~s   37 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSH-PYL-EVKQVTS   37 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTC-TTE-EEEEEBC
T ss_pred             CEEEEECCCCHHHHHHHHHHHcC-CCc-EEEEEEC
Confidence            58999999999999999999876 543 5666665

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.51  E-value=0.11  Score=36.51  Aligned_cols=35  Identities=17%  Similarity=0.105  Sum_probs=30.1

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHh-CCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRA-IPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~-~~~~~~V~~l~R~~  102 (121)
                      .+++|+|.| .|.+|..+++.|.+. +.   +|+++.|++
T Consensus        38 ~~~~v~IiG-~G~~G~~~a~~L~~~~g~---~V~vid~~~   73 (183)
T 3c85_A           38 GHAQVLILG-MGRIGTGAYDELRARYGK---ISLGIEIRE   73 (183)
T ss_dssp             TTCSEEEEC-CSHHHHHHHHHHHHHHCS---CEEEEESCH
T ss_pred             CCCcEEEEC-CCHHHHHHHHHHHhccCC---eEEEEECCH
Confidence            467899998 599999999999998 87   688998874

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=93.48  E-value=0.11  Score=39.34  Aligned_cols=34  Identities=21%  Similarity=0.307  Sum_probs=30.3

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++|.|.|+||.+|+.++..|.+.++   +|++..|++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~---~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAH---HLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSS---EEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC---EEEEEECCH
Confidence            5899999999999999999999876   788888864

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=93.46  E-value=0.074  Score=42.11  Aligned_cols=33  Identities=27%  Similarity=0.321  Sum_probs=25.5

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEE
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLL   98 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l   98 (121)
                      ++|.|.||+|++|..+++.|.++++.+..++.+
T Consensus         1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~   33 (331)
T 2yv3_A            1 MRVAVVGATGAVGREILKVLEARNFPLSELRLY   33 (331)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEe
Confidence            479999999999999999998655444445443

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=93.45  E-value=0.091  Score=40.72  Aligned_cols=36  Identities=17%  Similarity=0.154  Sum_probs=31.3

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHh-CCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRA-IPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~-~~~~~~V~~l~R~~  102 (121)
                      .+++|+|+||+|-+|..++..+... |.   +|++..|+.
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga---~Vi~~~~~~  206 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGA---TIIGVDVRE  206 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCC---EEEEEESSH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCC---eEEEEcCCH
Confidence            5789999999999999999988887 76   788888864

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=93.44  E-value=0.15  Score=41.09  Aligned_cols=32  Identities=31%  Similarity=0.402  Sum_probs=26.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEe
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLV   99 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~   99 (121)
                      .+|.|.||||++|.++++.|..+ |.+ +|..+.
T Consensus        14 ~~V~IvGAtG~vG~ellrlL~~h-P~~-el~~l~   45 (351)
T 1vkn_A           14 IRAGIIGATGYTGLELVRLLKNH-PEA-KITYLS   45 (351)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHC-TTE-EEEEEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHcC-CCc-EEEEEe
Confidence            48999999999999999999987 653 555554

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=93.39  E-value=0.11  Score=40.40  Aligned_cols=37  Identities=11%  Similarity=0.054  Sum_probs=31.4

Q ss_pred             cC--CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RD--ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~--~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+  ++|+|+||+|-+|..++..+...|.  .+|++..|+.
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga--~~Vi~~~~~~  196 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGC--SRVVGICGTH  196 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTC--SEEEEEESCH
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCC--CeEEEEeCCH
Confidence            46  8999999999999999998888875  2788888863

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=93.39  E-value=0.13  Score=40.58  Aligned_cols=37  Identities=24%  Similarity=0.252  Sum_probs=30.3

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++|.|+||+|.+|+.++..|....+-+.+++++++.+
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~   37 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC
Confidence            5899999999999999988887622235899999876

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=93.30  E-value=0.11  Score=42.13  Aligned_cols=33  Identities=27%  Similarity=0.338  Sum_probs=25.7

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEE
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLL   98 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l   98 (121)
                      +..+|.|.||||++|.++++.|..+ |.+ +|..+
T Consensus        18 ~~~kVaIvGAtG~vG~ell~lL~~h-p~~-el~~l   50 (381)
T 3hsk_A           18 SVKKAGVLGATGSVGQRFILLLSKH-PEF-EIHAL   50 (381)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTC-SSE-EEEEE
T ss_pred             CccEEEEECCCChHHHHHHHHHHcC-CCc-eEEEe
Confidence            4468999999999999999977665 543 56544

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=93.25  E-value=0.091  Score=39.96  Aligned_cols=37  Identities=27%  Similarity=0.241  Sum_probs=31.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++|+|+ |-+|..++..|++.|.   +|++..|+..
T Consensus       117 ~~~~~vlvlGa-Gg~g~a~a~~L~~~G~---~v~v~~R~~~  153 (272)
T 1p77_A          117 RPNQHVLILGA-GGATKGVLLPLLQAQQ---NIVLANRTFS  153 (272)
T ss_dssp             CTTCEEEEECC-SHHHHTTHHHHHHTTC---EEEEEESSHH
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            46789999998 5699999999999984   8999999753

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=93.16  E-value=0.15  Score=40.44  Aligned_cols=37  Identities=27%  Similarity=0.307  Sum_probs=32.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +.+++|+|+|+ |-+|..+++.+...|.   +|++..|+..
T Consensus       164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga---~V~~~d~~~~  200 (369)
T 2eez_A          164 VAPASVVILGG-GTVGTNAAKIALGMGA---QVTILDVNHK  200 (369)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEECCHH
Confidence            56799999999 9999999999999986   7999998743

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=93.14  E-value=0.12  Score=51.72  Aligned_cols=39  Identities=18%  Similarity=0.171  Sum_probs=34.7

Q ss_pred             hcCCeEEEEcCCCh-HHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGF-MGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGf-IGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++|+++||||++= ||..+++.|++.|.   +|++..|+...
T Consensus      2134 l~gKvaLVTGAs~GsIG~AiA~~La~~GA---~Vvi~~r~~~~ 2173 (3089)
T 3zen_D         2134 XXDEVAVVTGASKGSIAASVVGQLLDGGA---TVIATTSRLDD 2173 (3089)
T ss_dssp             CCCCEEEEESCCTTSHHHHHHHHHHHTTC---EEEEEESCCSH
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHHCCC---EEEEEeCChhh
Confidence            68999999999877 99999999999997   79988987543

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=93.14  E-value=0.1  Score=41.04  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=27.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.|+|+|.|| |++|+.+++.|.+. +   .|.+.+|+.
T Consensus        14 g~~mkilvlGa-G~vG~~~~~~L~~~-~---~v~~~~~~~   48 (365)
T 3abi_A           14 GRHMKVLILGA-GNIGRAIAWDLKDE-F---DVYIGDVNN   48 (365)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHTTT-S---EEEEEESCH
T ss_pred             CCccEEEEECC-CHHHHHHHHHHhcC-C---CeEEEEcCH
Confidence            35578999999 99999999988764 4   677777753

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=92.89  E-value=0.11  Score=40.70  Aligned_cols=36  Identities=19%  Similarity=0.206  Sum_probs=31.0

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+|+|+||+|-+|..++..+...|.   +|++..|+.
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga---~Vi~~~~~~  198 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKC---HVIGTCSSD  198 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC---EEEEEECCH
Confidence            468999999999999999988887775   799998864

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=92.84  E-value=0.12  Score=40.37  Aligned_cols=34  Identities=18%  Similarity=0.230  Sum_probs=30.5

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+|+|| |-+|..++..+...|.   +|++..|+.
T Consensus       181 g~~VlV~Ga-G~vG~~~~q~a~~~Ga---~Vi~~~~~~  214 (366)
T 2cdc_A          181 CRKVLVVGT-GPIGVLFTLLFRTYGL---EVWMANRRE  214 (366)
T ss_dssp             TCEEEEESC-HHHHHHHHHHHHHHTC---EEEEEESSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEeCCc
Confidence            899999999 9999999988888876   799999975

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=92.83  E-value=0.14  Score=37.41  Aligned_cols=34  Identities=18%  Similarity=0.196  Sum_probs=29.1

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++|.|.| +|.+|+.++..|.+.++   +|++..|+.
T Consensus        28 ~~~I~iiG-~G~~G~~la~~l~~~g~---~V~~~~r~~   61 (215)
T 2vns_A           28 APKVGILG-SGDFARSLATRLVGSGF---KVVVGSRNP   61 (215)
T ss_dssp             -CCEEEEC-CSHHHHHHHHHHHHTTC---CEEEEESSH
T ss_pred             CCEEEEEc-cCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            46899999 89999999999999876   688888864

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=92.80  E-value=0.17  Score=38.76  Aligned_cols=35  Identities=31%  Similarity=0.322  Sum_probs=30.2

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +|+|+||+|-+|...+..+...|.   +|++..++..+
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~Ga---~vi~~~~~~~~  187 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKRGY---DVVASTGNREA  187 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTC---CEEEEESSSST
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCHHH
Confidence            899999999999999988877876   68899987654

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=92.78  E-value=0.18  Score=38.12  Aligned_cols=39  Identities=23%  Similarity=0.177  Sum_probs=32.7

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ...+++++|+|.|++| +|++++..|++.|.  .++.+++++
T Consensus        23 q~~l~~~~VlvvG~Gg-lG~~va~~La~~Gv--g~i~lvD~d   61 (251)
T 1zud_1           23 QQKLLDSQVLIIGLGG-LGTPAALYLAGAGV--GTLVLADDD   61 (251)
T ss_dssp             HHHHHTCEEEEECCST-THHHHHHHHHHTTC--SEEEEECCC
T ss_pred             HHHHhcCcEEEEccCH-HHHHHHHHHHHcCC--CeEEEEeCC
Confidence            3557889999999977 89999999999976  488888654

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=92.69  E-value=0.061  Score=36.56  Aligned_cols=36  Identities=8%  Similarity=0.157  Sum_probs=30.5

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+++|+|.|+ |.+|..++..|...+.   +|++..|+..
T Consensus        20 ~~~~v~iiG~-G~iG~~~a~~l~~~g~---~v~v~~r~~~   55 (144)
T 3oj0_A           20 GGNKILLVGN-GMLASEIAPYFSYPQY---KVTVAGRNID   55 (144)
T ss_dssp             CCCEEEEECC-SHHHHHHGGGCCTTTC---EEEEEESCHH
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEcCCHH
Confidence            4899999996 9999999999988764   4899999754

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=92.62  E-value=0.13  Score=39.94  Aligned_cols=36  Identities=11%  Similarity=0.140  Sum_probs=30.9

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+|+|+||+|-+|...+..+...|.   +|++..++.
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga---~Vi~~~~~~  185 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGL---RVITTASRN  185 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEECCSH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            688999999999999999987777765   799988864

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=92.62  E-value=0.18  Score=39.00  Aligned_cols=39  Identities=21%  Similarity=0.332  Sum_probs=32.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++++++|+|+ |-+|..++..|++.|.  .+|++..|+..+
T Consensus       124 l~~k~vlvlGa-Gg~g~aia~~L~~~G~--~~v~v~~R~~~~  162 (281)
T 3o8q_A          124 LKGATILLIGA-GGAARGVLKPLLDQQP--ASITVTNRTFAK  162 (281)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTCC--SEEEEEESSHHH
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHhcCC--CeEEEEECCHHH
Confidence            36899999998 5689999999999875  389999997543

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=92.62  E-value=0.13  Score=41.43  Aligned_cols=36  Identities=14%  Similarity=0.275  Sum_probs=26.7

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCC-CccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIP-HLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~-~~~~V~~l~R~  101 (121)
                      ++|.|.||||++|+.++++++...+ .+..++.+..+
T Consensus         2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~   38 (367)
T 1t4b_A            2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS   38 (367)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS
T ss_pred             cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeC
Confidence            4799999999999999996666432 23467666653

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=92.59  E-value=0.2  Score=33.94  Aligned_cols=34  Identities=24%  Similarity=0.358  Sum_probs=29.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+|+|.|+ |.+|..+++.|.+.+.   .|+++.+++.
T Consensus         8 ~~viIiG~-G~~G~~la~~L~~~g~---~v~vid~~~~   41 (140)
T 3fwz_A            8 NHALLVGY-GRVGSLLGEKLLASDI---PLVVIETSRT   41 (140)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTC---CEEEEESCHH
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCC---CEEEEECCHH
Confidence            46888887 9999999999999887   6999998753

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=92.54  E-value=0.19  Score=38.66  Aligned_cols=38  Identities=21%  Similarity=0.271  Sum_probs=31.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++|+|+ |-+|+.++..|++.|.  .+|++..|+..
T Consensus       118 l~~k~~lvlGa-Gg~~~aia~~L~~~G~--~~v~i~~R~~~  155 (272)
T 3pwz_A          118 LRNRRVLLLGA-GGAVRGALLPFLQAGP--SELVIANRDMA  155 (272)
T ss_dssp             CTTSEEEEECC-SHHHHHHHHHHHHTCC--SEEEEECSCHH
T ss_pred             ccCCEEEEECc-cHHHHHHHHHHHHcCC--CEEEEEeCCHH
Confidence            35789999998 5689999999999875  38999999754

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=92.45  E-value=0.13  Score=39.76  Aligned_cols=37  Identities=30%  Similarity=0.524  Sum_probs=29.4

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++|.|.||+|.+|+.+++.+.+. +++.-+.+++|+.
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~-~~~eLv~~~d~~~   43 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAA-PDATLVGALDRTG   43 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHC-TTEEEEEEBCCTT
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEEecC
Confidence            368999999999999999999886 5544455567763

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=92.40  E-value=0.24  Score=36.68  Aligned_cols=35  Identities=17%  Similarity=0.246  Sum_probs=29.9

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      |+|.|.|+ |.+|+.+...|.+.|+   +|+++.|++..
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~---~V~~~~r~~~~   35 (291)
T 1ks9_A            1 MKITVLGC-GALGQLWLTALCKQGH---EVQGWLRVPQP   35 (291)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSSCCS
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCC---CEEEEEcCccc
Confidence            47899998 9999999999999887   78888887643

>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1

Probab=92.30  E-value=0.22  Score=39.51  Aligned_cols=37  Identities=35%  Similarity=0.367  Sum_probs=31.6

Q ss_pred             hhcCCe-EEEE-cCC-----------------ChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          62 FFRDAS-VFVT-GGT-----------------GFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        62 ~~~~~~-VlVT-Gat-----------------GfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+.|++ |+|| |+|                 |-.|..+++++++.|+   .|+.+.|.
T Consensus        33 ~l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga---~V~lv~g~   88 (313)
T 1p9o_A           33 GAQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGY---GVLFLYRA   88 (313)
T ss_dssp             HHTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTC---EEEEEEET
T ss_pred             hhcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCC---EEEEEecC
Confidence            357888 9998 667                 9999999999999998   68888875

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=92.12  E-value=0.22  Score=40.43  Aligned_cols=35  Identities=17%  Similarity=0.293  Sum_probs=25.2

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCC-ccEEEEEe
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPH-LKHIYLLV   99 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~-~~~V~~l~   99 (121)
                      .++|.|.||||++|.++++.|+...|. ..++..+.
T Consensus         4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~s   39 (377)
T 3uw3_A            4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFS   39 (377)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEe
Confidence            368999999999999999955554342 23555554

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=92.11  E-value=0.08  Score=40.80  Aligned_cols=36  Identities=25%  Similarity=0.375  Sum_probs=27.0

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEE-EEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIY-LLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~-~l~R~~  102 (121)
                      .++|+|+|++|.+|+.+++++... ++. ++. ++.|+.
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~-~~~-elva~~d~~~   41 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALAL-EGV-QLGAALEREG   41 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHS-TTE-ECCCEECCTT
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhC-CCC-EEEEEEecCc
Confidence            468999999999999999998865 443 444 445543

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=92.09  E-value=0.23  Score=38.46  Aligned_cols=37  Identities=14%  Similarity=0.160  Sum_probs=31.4

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++|+|+||+|-+|...+..+...|.   +|++..++..+
T Consensus       165 ~~~vli~gg~g~vG~~a~qla~~~Ga---~Vi~~~~~~~~  201 (349)
T 3pi7_A          165 EKAFVMTAGASQLCKLIIGLAKEEGF---RPIVTVRRDEQ  201 (349)
T ss_dssp             CSEEEESSTTSHHHHHHHHHHHHHTC---EEEEEESCGGG
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCHHH
Confidence            37999999999999999988888875   79999987544

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=92.02  E-value=0.17  Score=38.71  Aligned_cols=36  Identities=22%  Similarity=0.267  Sum_probs=31.1

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .++|.|.||.|.+|..++..|.+.|+   +|++..|+..
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~---~V~~~~~~~~   56 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGY---PISILDREDW   56 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTC---CEEEECTTCG
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCC---eEEEEECCcc
Confidence            35899999999999999999999987   5888888753

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=91.92  E-value=0.11  Score=41.65  Aligned_cols=36  Identities=14%  Similarity=0.149  Sum_probs=29.8

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+|+|+||+|-+|...+..+...|.   +|++.+++.
T Consensus       220 ~g~~VlV~GasG~iG~~a~qla~~~Ga---~vi~~~~~~  255 (447)
T 4a0s_A          220 QGDIVLIWGASGGLGSYAIQFVKNGGG---IPVAVVSSA  255 (447)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            468999999999999998887777765   688887753

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=91.81  E-value=0.4  Score=37.29  Aligned_cols=37  Identities=16%  Similarity=0.133  Sum_probs=31.3

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.+|+|+|| |-+|...+..+...|.   +|+++.++..+
T Consensus       179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga---~Vi~~~~~~~~  215 (360)
T 1piw_A          179 PGKKVGIVGL-GGIGSMGTLISKAMGA---ETYVISRSSRK  215 (360)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTC---EEEEEESSSTT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEcCCHHH
Confidence            4789999999 9999999887777775   69999987665

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=91.67  E-value=0.16  Score=40.26  Aligned_cols=32  Identities=28%  Similarity=0.486  Sum_probs=26.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEe
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLV   99 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~   99 (121)
                      .+|.|.||+|++|..+++.|..+ |.+ +|.++.
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~-p~~-elvai~   36 (350)
T 2ep5_A            5 IKVSLLGSTGMVGQKMVKMLAKH-PYL-ELVKVS   36 (350)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTC-SSE-EEEEEE
T ss_pred             cEEEEECcCCHHHHHHHHHHHhC-CCc-EEEEEe
Confidence            58999999999999999988876 543 676665

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=91.46  E-value=0.35  Score=35.13  Aligned_cols=36  Identities=17%  Similarity=0.224  Sum_probs=29.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ...++|.|.| .|.+|+.++..|.+.++   +|++..|++
T Consensus        17 ~~~~~I~iiG-~G~mG~~la~~l~~~g~---~V~~~~~~~   52 (209)
T 2raf_A           17 FQGMEITIFG-KGNMGQAIGHNFEIAGH---EVTYYGSKD   52 (209)
T ss_dssp             ---CEEEEEC-CSHHHHHHHHHHHHTTC---EEEEECTTC
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            4568899999 79999999999999886   788888864

>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3anm_A* 3anl_A* 3ann_A* 3iie_A

Probab=91.39  E-value=0.34  Score=40.01  Aligned_cols=36  Identities=22%  Similarity=0.307  Sum_probs=28.5

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+|.|.|+||+||..-++-+.+. |+--+|++|.=..
T Consensus        10 k~i~ILGSTGSIGtqtLdVi~~~-pd~f~V~aL~ag~   45 (406)
T 1q0q_A           10 KQLTILGSTGSIGCSTLDVVRHN-PEHFRVVALVAGK   45 (406)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHC-TTTEEEEEEEESS
T ss_pred             eeEEEEccCcHHHHHHHHHHHhC-CCccEEEEEEcCC
Confidence            57899999999999999887775 5534788877643

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=91.36  E-value=0.21  Score=38.70  Aligned_cols=34  Identities=18%  Similarity=0.381  Sum_probs=28.5

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+.+|+|+||+|-+|...+..+...|.   +|++. ++
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga---~Vi~~-~~  183 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALARGA---RVFAT-AR  183 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEE-EC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC---EEEEE-eC
Confidence            468999999999999999988887776   68877 54

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=91.16  E-value=0.2  Score=38.18  Aligned_cols=36  Identities=14%  Similarity=0.230  Sum_probs=30.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++++||||+ -+|..++..|++.|    +|++..|+..
T Consensus       126 l~~k~vlV~GaG-giG~aia~~L~~~G----~V~v~~r~~~  161 (287)
T 1nvt_A          126 VKDKNIVIYGAG-GAARAVAFELAKDN----NIIIANRTVE  161 (287)
T ss_dssp             CCSCEEEEECCS-HHHHHHHHHHTSSS----EEEEECSSHH
T ss_pred             cCCCEEEEECch-HHHHHHHHHHHHCC----CEEEEECCHH
Confidence            467999999996 89999999999986    5888888643

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=91.15  E-value=0.39  Score=33.30  Aligned_cols=42  Identities=12%  Similarity=0.111  Sum_probs=34.7

Q ss_pred             chhhhhc-CCeEEEEcCC---ChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          58 PIQEFFR-DASVFVTGGT---GFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        58 ~i~~~~~-~~~VlVTGat---GfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+..++. .++|.|.|++   |.+|..+++.|++.++   +|+.+.+..
T Consensus         5 ~l~~ll~~p~~IavIGas~~~g~~G~~~~~~L~~~G~---~v~~vnp~~   50 (145)
T 2duw_A            5 DIAGILTSTRTIALVGASDKPDRPSYRVMKYLLDQGY---HVIPVSPKV   50 (145)
T ss_dssp             SHHHHHHHCCCEEEESCCSCTTSHHHHHHHHHHHHTC---CEEEECSSS
T ss_pred             HHHHHHhCCCEEEEECcCCCCCChHHHHHHHHHHCCC---EEEEeCCcc
Confidence            3667776 8899999998   8999999999999987   477776654

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=91.11  E-value=0.23  Score=37.93  Aligned_cols=35  Identities=26%  Similarity=0.246  Sum_probs=29.7

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +|+|+||+|-+|...+..+...|.   +|++..++..+
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga---~vi~~~~~~~~  186 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGY---TVEASTGKAAE  186 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTC---CEEEEESCTTC
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCC---EEEEEECCHHH
Confidence            799999999999999987777765   68899987654

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=91.09  E-value=0.26  Score=37.47  Aligned_cols=35  Identities=23%  Similarity=0.225  Sum_probs=29.4

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +|+|+||+|-+|...+..+...|.   +|++..++..+
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga---~Vi~~~~~~~~  183 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGY---QVAAVSGREST  183 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTC---CEEEEESCGGG
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCC---EEEEEeCCHHH
Confidence            399999999999998887777765   79999987654

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=90.97  E-value=0.47  Score=32.72  Aligned_cols=40  Identities=13%  Similarity=0.105  Sum_probs=30.1

Q ss_pred             hhhhcCCeEEEEcCC---ChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          60 QEFFRDASVFVTGGT---GFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        60 ~~~~~~~~VlVTGat---GfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.+++.++|.|.|++   |.+|..+++.|++.++   +|+.+.+..
T Consensus         9 ~~l~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~---~V~~vnp~~   51 (138)
T 1y81_A            9 SNSKEFRKIALVGASKNPAKYGNIILKDLLSKGF---EVLPVNPNY   51 (138)
T ss_dssp             -----CCEEEEETCCSCTTSHHHHHHHHHHHTTC---EEEEECTTC
T ss_pred             ccccCCCeEEEEeecCCCCCHHHHHHHHHHHCCC---EEEEeCCCC
Confidence            456778899999997   8999999999999887   577777653

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=90.96  E-value=0.21  Score=41.56  Aligned_cols=36  Identities=22%  Similarity=0.220  Sum_probs=28.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++++|||| |-+|..++.+|++.|.   +|++..|+.
T Consensus       362 l~~k~vlV~Ga-GGig~aia~~L~~~G~---~V~i~~R~~  397 (523)
T 2o7s_A          362 LASKTVVVIGA-GGAGKALAYGAKEKGA---KVVIANRTY  397 (523)
T ss_dssp             ----CEEEECC-SHHHHHHHHHHHHHCC----CEEEESSH
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            46789999999 5899999999999986   688889974

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=90.92  E-value=0.2  Score=40.48  Aligned_cols=36  Identities=17%  Similarity=0.214  Sum_probs=29.6

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+|+|+||+|-+|...+..+...|.   +|++++++.
T Consensus       228 ~g~~VlV~GasG~vG~~avqlak~~Ga---~vi~~~~~~  263 (456)
T 3krt_A          228 QGDNVLIWGASGGLGSYATQFALAGGA---NPICVVSSP  263 (456)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCC---eEEEEECCH
Confidence            467999999999999999887777765   688887753

>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding; HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A* 3aua_A*

Probab=90.86  E-value=0.36  Score=40.70  Aligned_cols=45  Identities=20%  Similarity=0.239  Sum_probs=29.2

Q ss_pred             chhhhhcCCeEEEEcCCChHHHHHHHHHHHh--CCCccEEEEEecCC
Q psy3445          58 PIQEFFRDASVFVTGGTGFMGKILVEKLLRA--IPHLKHIYLLVRPK  102 (121)
Q Consensus        58 ~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~--~~~~~~V~~l~R~~  102 (121)
                      .+-...+-++|.|.|+||+||..-++-+.+.  .|+--+|.+|.=..
T Consensus        70 ~~~~~~~mk~I~ILGSTGSIGtqTLdVi~~~p~~pd~f~V~aLaAg~  116 (488)
T 3au8_A           70 DIGAIKKPINVAIFGSTGSIGTNALNIIRECNKIENVFNVKALYVNK  116 (488)
T ss_dssp             -------CEEEEEETTTSHHHHHHHHHHHHHHHHSCCEEEEEEEESS
T ss_pred             hhhhhhcceEEEEEccCcHHHHHHHHHHHcccCCCCeEEEEEEEcCC
Confidence            3334444568999999999999999888873  24434788877543

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=90.85  E-value=0.35  Score=37.36  Aligned_cols=38  Identities=18%  Similarity=0.224  Sum_probs=31.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +.+++++|+|+ |-+|..++..|++.|.  .+|++..|+..
T Consensus       139 l~~~~vlVlGa-Gg~g~aia~~L~~~G~--~~V~v~nR~~~  176 (297)
T 2egg_A          139 LDGKRILVIGA-GGGARGIYFSLLSTAA--ERIDMANRTVE  176 (297)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--SEEEEECSSHH
T ss_pred             CCCCEEEEECc-HHHHHHHHHHHHHCCC--CEEEEEeCCHH
Confidence            46889999998 5689999999999875  38999999753

>2y1e_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase, DOXP/MEP pathway; 1.65A {Mycobacterium tuberculosis} PDB: 2jcv_A* 2jcz_A* 2jd2_A 2jd1_A 2y1d_A* 2y1c_A 2y1f_A* 2y1g_A* 3ras_A* 4a03_A* 4aic_A* 2jcx_A* 2jcy_A 2jd0_A* 2c82_A

Probab=90.61  E-value=0.45  Score=39.18  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=28.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      |+|.|.|+||+||..-++-+.+. |+--+|.+|.=
T Consensus        22 k~i~ILGSTGSIGtqtLdVi~~~-pd~f~V~aLaa   55 (398)
T 2y1e_A           22 LRVVVLGSTGSIGTQALQVIADN-PDRFEVVGLAA   55 (398)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHC-TTTEEEEEEEE
T ss_pred             eEEEEEccCcHHHHHHHHHHHhC-CCceEEEEEEe
Confidence            57999999999999999887775 55347888876

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=90.45  E-value=0.45  Score=37.87  Aligned_cols=37  Identities=19%  Similarity=0.070  Sum_probs=32.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +.+++|+|+|+ |-+|..+++.+...|.   +|++..|+..
T Consensus       166 l~g~~V~ViG~-G~iG~~~a~~a~~~Ga---~V~~~d~~~~  202 (377)
T 2vhw_A          166 VEPADVVVIGA-GTAGYNAARIANGMGA---TVTVLDINID  202 (377)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEeCCHH
Confidence            57899999998 9999999999999876   7999998743

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=90.34  E-value=0.23  Score=38.41  Aligned_cols=36  Identities=17%  Similarity=0.184  Sum_probs=30.1

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+|+|+|| |-+|...+..+...|.  .+|+++.|+.
T Consensus       167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga--~~Vi~~~~~~  202 (348)
T 2d8a_A          167 SGKSVLITGA-GPLGLLGIAVAKASGA--YPVIVSEPSD  202 (348)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTC--CSEEEECSCH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCC--CEEEEECCCH
Confidence            6789999999 9999999988777765  2688888864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=90.31  E-value=0.37  Score=36.21  Aligned_cols=39  Identities=26%  Similarity=0.240  Sum_probs=33.1

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ..+++++|+|.|+ |-+|++++..|++.|.  .+|.+++++.
T Consensus        27 ~~l~~~~VlVvG~-Gg~G~~va~~La~~Gv--~~i~lvD~d~   65 (249)
T 1jw9_B           27 EALKDSRVLIVGL-GGLGCAASQYLASAGV--GNLTLLDFDT   65 (249)
T ss_dssp             HHHHHCEEEEECC-SHHHHHHHHHHHHHTC--SEEEEECCCB
T ss_pred             HHHhCCeEEEEee-CHHHHHHHHHHHHcCC--CeEEEEcCCC
Confidence            4567899999997 5689999999999976  4899999875

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=90.20  E-value=0.64  Score=32.12  Aligned_cols=40  Identities=18%  Similarity=0.233  Sum_probs=33.0

Q ss_pred             chhhhhc-CCeEEEEcCC---ChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          58 PIQEFFR-DASVFVTGGT---GFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        58 ~i~~~~~-~~~VlVTGat---GfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      .+..++. .++|+|.|++   |.+|..+++.|.+.++   +|+.+..
T Consensus        14 ~l~~ll~~p~~iaVVGas~~~g~~G~~~~~~l~~~G~---~v~~Vnp   57 (144)
T 2d59_A           14 DIREILTRYKKIALVGASPKPERDANIVMKYLLEHGY---DVYPVNP   57 (144)
T ss_dssp             HHHHHHHHCCEEEEETCCSCTTSHHHHHHHHHHHTTC---EEEEECT
T ss_pred             HHHHHHcCCCEEEEEccCCCCCchHHHHHHHHHHCCC---EEEEECC
Confidence            4667785 8999999998   8999999999999877   5666654

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=90.19  E-value=0.23  Score=38.35  Aligned_cols=35  Identities=14%  Similarity=0.027  Sum_probs=29.1

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+|+|+|| |-+|..++..+...|.   +|+++.|+.
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga---~Vi~~~~~~  198 (339)
T 1rjw_A          164 PGEWVAIYGI-GGLGHVAVQYAKAMGL---NVVAVDIGD  198 (339)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            4789999999 5599999988777765   799998864

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=90.16  E-value=0.22  Score=38.55  Aligned_cols=39  Identities=18%  Similarity=0.291  Sum_probs=32.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++++++|+|+ |-+|+.++..|.+.|..  +|++..|+..+
T Consensus       115 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~--~v~v~~R~~~~  153 (277)
T 3don_A          115 IEDAYILILGA-GGASKGIANELYKIVRP--TLTVANRTMSR  153 (277)
T ss_dssp             GGGCCEEEECC-SHHHHHHHHHHHTTCCS--CCEEECSCGGG
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCC--EEEEEeCCHHH
Confidence            46889999998 66899999999998763  78999997544

>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*

Probab=90.13  E-value=0.39  Score=39.26  Aligned_cols=32  Identities=25%  Similarity=0.326  Sum_probs=25.5

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEE
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLL   98 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l   98 (121)
                      ++|.|.|+||.||+..++.+.+. |+--+|.++
T Consensus         5 ~rI~ILGsTGSIG~~~l~vi~~~-p~~~~v~al   36 (388)
T 1r0k_A            5 RTVTVLGATGSIGHSTLDLIERN-LDRYQVIAL   36 (388)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHT-GGGEEEEEE
T ss_pred             eEEEEECCCeEeHHHHHHHHHhC-cCcEEEEEE
Confidence            67999999999999999998875 442356655

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=90.03  E-value=0.52  Score=36.47  Aligned_cols=37  Identities=16%  Similarity=0.081  Sum_probs=30.2

Q ss_pred             cC-CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RD-ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~-~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+ .+|+|+||+|-+|...+..+...|.   ++++++++..
T Consensus       166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga---~vi~~~~~~~  203 (364)
T 1gu7_A          166 PGKDWFIQNGGTSAVGKYASQIGKLLNF---NSISVIRDRP  203 (364)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTC---EEEEEECCCT
T ss_pred             CCCcEEEECCCCcHHHHHHHHHHHHCCC---EEEEEecCcc
Confidence            46 8999999999999998877777765   6888887654

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=89.90  E-value=0.52  Score=32.52  Aligned_cols=41  Identities=7%  Similarity=0.083  Sum_probs=33.9

Q ss_pred             chhhhh-cCCeEEEEcCC---ChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          58 PIQEFF-RDASVFVTGGT---GFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        58 ~i~~~~-~~~~VlVTGat---GfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+..++ ..++|+|.|++   |-+|..+++.|.+.|+   +|+.+...
T Consensus         5 ~l~~ll~~p~~vaVvGas~~~g~~G~~~~~~l~~~G~---~v~~vnp~   49 (140)
T 1iuk_A            5 ELRAYLSQAKTIAVLGAHKDPSRPAHYVPRYLREQGY---RVLPVNPR   49 (140)
T ss_dssp             HHHHHHHHCCEEEEETCCSSTTSHHHHHHHHHHHTTC---EEEEECGG
T ss_pred             HHHHHHcCCCEEEEECCCCCCCChHHHHHHHHHHCCC---EEEEeCCC
Confidence            466778 78899999998   8999999999999887   57766554

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=89.83  E-value=0.51  Score=35.21  Aligned_cols=33  Identities=21%  Similarity=0.210  Sum_probs=29.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++|.|.|+ |.+|+.++..|.+.|+   +|+++.|++
T Consensus         4 m~i~iiG~-G~~G~~~a~~l~~~g~---~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGA-GAMGSRLGIMLHQGGN---DVTLIDQWP   36 (316)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCC---cEEEEECCH
Confidence            68999986 9999999999999887   799998864

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=89.74  E-value=0.4  Score=37.54  Aligned_cols=39  Identities=28%  Similarity=0.319  Sum_probs=32.8

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.+++++|+|.|++| +|++++..|++.|-  .++.+++++.
T Consensus        32 ~kL~~~~VlVvGaGG-lGs~va~~La~aGV--G~i~lvD~D~   70 (292)
T 3h8v_A           32 EKIRTFAVAIVGVGG-VGSVTAEMLTRCGI--GKLLLFDYDK   70 (292)
T ss_dssp             CGGGGCEEEEECCSH-HHHHHHHHHHHHTC--SEEEEECCCB
T ss_pred             HHHhCCeEEEECcCH-HHHHHHHHHHHcCC--CEEEEECCCc
Confidence            356789999999866 79999999999975  5899988765

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=89.71  E-value=0.63  Score=34.43  Aligned_cols=40  Identities=23%  Similarity=0.349  Sum_probs=30.8

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ...+.+++|.|.| .|.+|+.++..|++.++   +|++..|++.
T Consensus        14 ~~~~~~~kIgiIG-~G~mG~alA~~L~~~G~---~V~~~~r~~~   53 (245)
T 3dtt_A           14 NLYFQGMKIAVLG-TGTVGRTMAGALADLGH---EVTIGTRDPK   53 (245)
T ss_dssp             -----CCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             ccccCCCeEEEEC-CCHHHHHHHHHHHHCCC---EEEEEeCChh
Confidence            3456778999995 89999999999999987   7999999753

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=89.48  E-value=0.65  Score=35.84  Aligned_cols=37  Identities=19%  Similarity=0.244  Sum_probs=30.4

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.+|+|+|+ |-+|...+..+...|.   +|++..++..+
T Consensus       176 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga---~Vi~~~~~~~~  212 (348)
T 3two_A          176 KGTKVGVAGF-GGLGSMAVKYAVAMGA---EVSVFARNEHK  212 (348)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHTTC---EEEEECSSSTT
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCC---eEEEEeCCHHH
Confidence            5789999997 9999988877766765   79999988765

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=89.23  E-value=0.65  Score=36.27  Aligned_cols=34  Identities=15%  Similarity=0.279  Sum_probs=27.9

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      .+.+|+|+||+|-+|...+..+...|.   +|++..+
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga---~Vi~~~~  216 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAWDA---HVTAVCS  216 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEeC
Confidence            467999999999999998877777764   6877774

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=89.18  E-value=0.54  Score=36.74  Aligned_cols=38  Identities=16%  Similarity=0.190  Sum_probs=32.6

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+.+++|.|.|. |.+|+.+++.+...|.   +|++..|+..
T Consensus       152 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~---~V~~~d~~~~  189 (330)
T 2gcg_A          152 GLTQSTVGIIGL-GRIGQAIARRLKPFGV---QRFLYTGRQP  189 (330)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHGGGTC---CEEEEESSSC
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCC---EEEEECCCCc
Confidence            356899999986 9999999999999987   6889998754

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=89.18  E-value=0.88  Score=34.50  Aligned_cols=36  Identities=19%  Similarity=0.235  Sum_probs=29.5

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.+|+|+|| |-+|...+..+...|.   +|++.. +..+
T Consensus       142 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga---~Vi~~~-~~~~  177 (315)
T 3goh_A          142 KQREVLIVGF-GAVNNLLTQMLNNAGY---VVDLVS-ASLS  177 (315)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTC---EEEEEC-SSCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCC---EEEEEE-Chhh
Confidence            4789999999 9999998887777765   788888 5544

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=89.08  E-value=1  Score=37.01  Aligned_cols=38  Identities=24%  Similarity=0.306  Sum_probs=31.7

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      ...+++.+|+|.|++| +|++++..|++.|-  .++.+++.
T Consensus        35 ~~~L~~~~VlvvG~GG-lGs~va~~La~aGv--g~i~ivD~   72 (434)
T 1tt5_B           35 QFLLDTCKVLVIGAGG-LGCELLKNLALSGF--RQIHVIDM   72 (434)
T ss_dssp             HHHHHTCCEEEECSST-HHHHHHHHHHHTTC--CCEEEEEC
T ss_pred             HHHhcCCEEEEECcCH-HHHHHHHHHHHcCC--CEEEEEcC
Confidence            3455889999999977 89999999999976  48888864

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=89.06  E-value=0.36  Score=35.20  Aligned_cols=37  Identities=19%  Similarity=0.227  Sum_probs=30.1

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEE-EecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYL-LVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~-l~R~~~~  104 (121)
                      +-++|.|.| +|.+|..++..|.+.++   +|++ ..|++..
T Consensus        22 ~mmkI~IIG-~G~mG~~la~~l~~~g~---~V~~v~~r~~~~   59 (220)
T 4huj_A           22 SMTTYAIIG-AGAIGSALAERFTAAQI---PAIIANSRGPAS   59 (220)
T ss_dssp             GSCCEEEEE-CHHHHHHHHHHHHHTTC---CEEEECTTCGGG
T ss_pred             cCCEEEEEC-CCHHHHHHHHHHHhCCC---EEEEEECCCHHH
Confidence            346899999 89999999999999887   4666 7787544

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=88.91  E-value=0.65  Score=37.25  Aligned_cols=38  Identities=26%  Similarity=0.436  Sum_probs=33.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +.+++|+|.|+ |-+|..++..+...|.  .+|++..|+..
T Consensus       165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~--~~V~v~~r~~~  202 (404)
T 1gpj_A          165 LHDKTVLVVGA-GEMGKTVAKSLVDRGV--RAVLVANRTYE  202 (404)
T ss_dssp             CTTCEEEEESC-CHHHHHHHHHHHHHCC--SEEEEECSSHH
T ss_pred             ccCCEEEEECh-HHHHHHHHHHHHHCCC--CEEEEEeCCHH
Confidence            57899999998 9999999999999876  38999999753

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=88.89  E-value=0.66  Score=35.42  Aligned_cols=34  Identities=15%  Similarity=-0.007  Sum_probs=29.3

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++|.|.|+ |.+|+.++..|.+.++   +|+++.|++
T Consensus         4 ~mki~iiG~-G~~G~~~a~~L~~~g~---~V~~~~r~~   37 (359)
T 1bg6_A            4 SKTYAVLGL-GNGGHAFAAYLALKGQ---SVLAWDIDA   37 (359)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCCC---EEEEEeCCH
Confidence            368999986 9999999999999876   688888864

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=88.87  E-value=0.76  Score=35.46  Aligned_cols=36  Identities=22%  Similarity=0.300  Sum_probs=32.0

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++++|.|+ |-.|+.++..|++.|.   +|++..|+..+
T Consensus       118 ~k~vlvlGa-GGaaraia~~L~~~G~---~v~V~nRt~~k  153 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACELKKQGL---QVSVLNRSSRG  153 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSSCTT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEeCCHHH
Confidence            789999997 7789999999999983   89999998765

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=88.86  E-value=0.51  Score=37.82  Aligned_cols=39  Identities=13%  Similarity=0.251  Sum_probs=32.6

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.+++++|+|.|++| +|++++..|+..|-  .++.+++++.
T Consensus        30 ~kL~~~~VlIvGaGG-lGs~va~~La~aGV--g~ItlvD~D~   68 (340)
T 3rui_A           30 DIIKNTKVLLLGAGT-LGCYVSRALIAWGV--RKITFVDNGT   68 (340)
T ss_dssp             HHHHTCEEEEECCSH-HHHHHHHHHHHTTC--CEEEEECCCB
T ss_pred             HHHhCCEEEEECCCH-HHHHHHHHHHHcCC--CEEEEecCCE
Confidence            367889999999866 79999999999976  5899988743

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=88.78  E-value=0.76  Score=35.06  Aligned_cols=36  Identities=17%  Similarity=0.177  Sum_probs=31.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.+++|+|.|+ |-+|..+++.+...|.   +|++..|+.
T Consensus       155 l~g~~v~IiG~-G~iG~~~a~~l~~~G~---~V~~~d~~~  190 (300)
T 2rir_A          155 IHGSQVAVLGL-GRTGMTIARTFAALGA---NVKVGARSS  190 (300)
T ss_dssp             STTSEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCCEEEEEcc-cHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            56899999996 8999999999999886   799999875

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=88.69  E-value=1.3  Score=34.32  Aligned_cols=36  Identities=14%  Similarity=0.110  Sum_probs=28.6

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+|+|+||+|-+|...+..+...|.   ++++.++..
T Consensus       167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga---~vi~~~~~~  202 (357)
T 1zsy_A          167 PGDSVIQNASNSGVGQAVIQIAAALGL---RTINVVRDR  202 (357)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTC---EEEEEECCC
T ss_pred             CCCEEEEeCCcCHHHHHHHHHHHHcCC---EEEEEecCc
Confidence            468999999999999998877766765   577776653

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=88.60  E-value=0.67  Score=35.91  Aligned_cols=35  Identities=20%  Similarity=0.119  Sum_probs=30.0

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++|.|.|+ |.+|+.++..|+..++ ..+|++++|++
T Consensus         1 mkI~VIGa-G~~G~~la~~l~~~g~-~~~V~l~D~~~   35 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALLMKGF-AREMVLIDVDK   35 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC-CCeEEEEeCCh
Confidence            57999998 9999999999999875 34799999874

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=88.55  E-value=0.65  Score=39.03  Aligned_cols=36  Identities=17%  Similarity=0.048  Sum_probs=31.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.|++++|||++ -||..+++.|...|.   +|++..|++
T Consensus       263 L~GKtVvVtGaG-gIG~aiA~~Laa~GA---~Viv~D~~~  298 (488)
T 3ond_A          263 IAGKVAVVAGYG-DVGKGCAAALKQAGA---RVIVTEIDP  298 (488)
T ss_dssp             CTTCEEEEECCS-HHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             ccCCEEEEECCC-HHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            578999999986 899999999999987   788888764

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=88.48  E-value=0.5  Score=36.40  Aligned_cols=36  Identities=25%  Similarity=0.203  Sum_probs=29.7

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHh--CCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRA--IPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~--~~~~~~V~~l~R~~~  103 (121)
                      .+.+|+|+|| |-+|...+..+...  |.   +|+++.++..
T Consensus       170 ~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga---~Vi~~~~~~~  207 (344)
T 2h6e_A          170 AEPVVIVNGI-GGLAVYTIQILKALMKNI---TIVGISRSKK  207 (344)
T ss_dssp             SSCEEEEECC-SHHHHHHHHHHHHHCTTC---EEEEECSCHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHhcCCC---EEEEEeCCHH
Confidence            6889999999 99999988777667  65   6999888643

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=88.41  E-value=0.8  Score=34.79  Aligned_cols=36  Identities=22%  Similarity=0.158  Sum_probs=30.2

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++|.|.|| |.+|+.++..|+..+. +.+|++++|+.
T Consensus         7 ~mkI~IiGa-G~vG~~~a~~l~~~g~-~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGA-GAVGSTLAFAAAQRGI-AREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence            378999998 9999999999998865 24799998874

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=88.37  E-value=0.82  Score=36.05  Aligned_cols=37  Identities=14%  Similarity=0.246  Sum_probs=32.2

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++|+|+|+ |-+|..++..+...|.   +|++..|+..
T Consensus       165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga---~V~v~dr~~~  201 (361)
T 1pjc_A          165 VKPGKVVILGG-GVVGTEAAKMAVGLGA---QVQIFDINVE  201 (361)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEeCCHH
Confidence            45689999999 9999999999999876   7999999753

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=88.33  E-value=0.82  Score=35.82  Aligned_cols=38  Identities=16%  Similarity=0.238  Sum_probs=32.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +.+++|.|.| .|.+|+.+++.+...|.   +|++..|+...
T Consensus       148 l~g~~vgIIG-~G~iG~~iA~~l~~~G~---~V~~~d~~~~~  185 (334)
T 2dbq_A          148 VYGKTIGIIG-LGRIGQAIAKRAKGFNM---RILYYSRTRKE  185 (334)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEECSSCCH
T ss_pred             CCCCEEEEEc-cCHHHHHHHHHHHhCCC---EEEEECCCcch
Confidence            5678999998 59999999999999886   79999987653

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=88.28  E-value=1.3  Score=34.78  Aligned_cols=37  Identities=22%  Similarity=0.204  Sum_probs=31.3

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      |+|.|+|+ |.+|+.++..|+..+. +.+|+++++++..
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~-~~el~l~D~~~~k   37 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDV-AKEVVMVDIKDGM   37 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTC-SSEEEEECSSTTH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCchHH
Confidence            58999997 9999999999998864 3589999998754

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=88.25  E-value=0.71  Score=35.98  Aligned_cols=39  Identities=18%  Similarity=0.224  Sum_probs=30.7

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCc
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGK  105 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~  105 (121)
                      .++|.|+|| |++|..++..|+..+. +.+|.+++++..+.
T Consensus         7 ~~KI~IiGa-G~vG~~~a~~l~~~~~-~~ev~L~Di~~~~~   45 (318)
T 1y6j_A            7 RSKVAIIGA-GFVGASAAFTMALRQT-ANELVLIDVFKEKA   45 (318)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTC-SSEEEEECCC---C
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCChHHH
Confidence            468999998 9999999999988864 46899999976543

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=88.12  E-value=0.57  Score=34.64  Aligned_cols=36  Identities=19%  Similarity=0.309  Sum_probs=29.8

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|.|.|+ |.+|+.++..|.+.+++  .|.+..|++
T Consensus         9 ~~m~i~iiG~-G~mG~~~a~~l~~~g~~--~v~~~~~~~   44 (266)
T 3d1l_A            9 EDTPIVLIGA-GNLATNLAKALYRKGFR--IVQVYSRTE   44 (266)
T ss_dssp             GGCCEEEECC-SHHHHHHHHHHHHHTCC--EEEEECSSH
T ss_pred             CCCeEEEEcC-CHHHHHHHHHHHHCCCe--EEEEEeCCH
Confidence            4578999997 99999999999998763  478888864

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=88.02  E-value=1.4  Score=34.41  Aligned_cols=37  Identities=14%  Similarity=0.195  Sum_probs=32.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.|++++|.|+++.+|+.++..|+..+.   .|++..|..
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gA---tVtv~~~~t  184 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNY---TVSVCHSKT  184 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTC---EEEEECTTC
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCC---eEEEEeCCc
Confidence            7899999999999999999999999876   688877754

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=87.98  E-value=0.81  Score=35.32  Aligned_cols=37  Identities=19%  Similarity=0.161  Sum_probs=29.7

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++|.|.|| |.+|..++..|+..+. ..+|++++|++..
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~-g~~V~l~D~~~~~   37 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQL-ARELVLLDVVEGI   37 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSSSH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCChhH
Confidence            57999998 9999999999888521 1389999998654

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=87.98  E-value=0.82  Score=33.92  Aligned_cols=33  Identities=24%  Similarity=0.283  Sum_probs=28.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+|.|.| .|.+|+.++..|.+.++   +|++..|++
T Consensus         1 m~i~iiG-~G~~G~~~a~~l~~~g~---~V~~~~~~~   33 (279)
T 2f1k_A            1 MKIGVVG-LGLIGASLAGDLRRRGH---YLIGVSRQQ   33 (279)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CEEEEEc-CcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            4788998 69999999999999876   788888864

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=87.84  E-value=0.92  Score=35.86  Aligned_cols=37  Identities=16%  Similarity=0.139  Sum_probs=30.9

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|.|+|| |.+|+.++..|+..+. +.+|++++++.
T Consensus         8 ~~~kV~ViGa-G~vG~~~a~~l~~~~~-~~el~l~D~~~   44 (326)
T 3vku_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGI-AQEIGIVDIFK   44 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSCH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC-CCeEEEEeCCh
Confidence            4578999997 9999999999998864 35899998864

>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*

Probab=87.71  E-value=1  Score=36.78  Aligned_cols=33  Identities=15%  Similarity=0.247  Sum_probs=26.8

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      ++|.|.|+||+||+.-++-+.+. +. .+|+++.=
T Consensus         4 k~i~ILGsTGSIG~~tldVi~~~-~~-~~vvaL~a   36 (376)
T 3a06_A            4 RTLVILGATGSIGTQTLDVLKKV-KG-IRLIGISF   36 (376)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHS-CS-EEEEEEEE
T ss_pred             ceEEEECCCCHHHHHHHHHHHhC-CC-eEEEEEEc
Confidence            68999999999999999888776 43 37777753

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=87.69  E-value=0.78  Score=34.95  Aligned_cols=35  Identities=11%  Similarity=0.220  Sum_probs=29.0

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+.+|+|+||+|-+|...+..+...|.   +|++..+.
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga---~vi~~~~~  186 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLAKQKGT---TVITTASK  186 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEECH
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCC---EEEEEecc
Confidence            578999999999999999988777765   67777653

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=87.55  E-value=0.9  Score=35.00  Aligned_cols=35  Identities=26%  Similarity=0.288  Sum_probs=29.6

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++|.|.|| |.+|..++..|+..+. +.+|++++++.
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~-~~eV~L~D~~~   35 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGS-CSELVLVDRDE   35 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCH
Confidence            57999998 9999999999988865 35799998874

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=87.54  E-value=0.84  Score=33.97  Aligned_cols=37  Identities=24%  Similarity=0.368  Sum_probs=30.8

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+++|+|.|| |++|.+++..|.+.+.   +|+++.|..
T Consensus       142 ~~~~k~vvViGg-G~ig~E~A~~l~~~g~---~Vtlv~~~~  178 (312)
T 4gcm_A          142 FFKNKRLFVIGG-GDSAVEEGTFLTKFAD---KVTIVHRRD  178 (312)
T ss_dssp             GGTTCEEEEECC-SHHHHHHHHHHTTTCS---EEEEECSSS
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHHhcCC---EEEEEeccc
Confidence            456789999875 8999999999998876   799888854

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=87.44  E-value=0.88  Score=35.52  Aligned_cols=37  Identities=11%  Similarity=0.093  Sum_probs=30.6

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.+|+|+|+ |-+|...+..+...|.   +|++..++..+
T Consensus       187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga---~Vi~~~~~~~~  223 (366)
T 1yqd_A          187 PGKHIGIVGL-GGLGHVAVKFAKAFGS---KVTVISTSPSK  223 (366)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCGGG
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEeCCHHH
Confidence            6789999996 8999999988777765   79999887543

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=87.40  E-value=1.3  Score=38.33  Aligned_cols=38  Identities=21%  Similarity=0.311  Sum_probs=32.1

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++.+|+|.|++| +|++++..|++.|-  .++.+++.+.
T Consensus       408 ~l~~~~vlvvG~Gg-lG~~~~~~L~~~Gv--g~i~l~D~d~  445 (805)
T 2nvu_B          408 LLDTCKVLVIGAGG-LGCELLKNLALSGF--RQIHVIDMDT  445 (805)
T ss_dssp             HHHTCCEEEECCSS-HHHHHHHHHHTTTC--CEEEEEECCB
T ss_pred             HHhCCeEEEECCCH-HHHHHHHHHHHcCC--CcEEEECCCe
Confidence            34889999999988 69999999999875  5899988753

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=87.37  E-value=1.5  Score=32.32  Aligned_cols=37  Identities=24%  Similarity=0.328  Sum_probs=30.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ..+++++|.|+ |++|.+++..|.+.+.   +|+++.|...
T Consensus       150 ~~~~~vvViGg-G~ig~e~A~~l~~~G~---~Vt~v~~~~~  186 (314)
T 4a5l_A          150 FRNKVLMVVGG-GDAAMEEALHLTKYGS---KVIILHRRDA  186 (314)
T ss_dssp             GTTSEEEEECS-SHHHHHHHHHHTTTSS---EEEEECSSSS
T ss_pred             cCCCeEEEECC-ChHHHHHHHHHHHhCC---eeeeeccccc
Confidence            46788988875 8999999999999886   7999888543

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=87.31  E-value=1  Score=35.36  Aligned_cols=37  Identities=14%  Similarity=0.252  Sum_probs=32.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.|++++|.|++|.+|+.+...|+..+.   .|++..|..
T Consensus       158 l~Gk~vvVvGrs~iVG~p~A~lL~~~gA---tVtv~h~~t  194 (285)
T 3p2o_A          158 LEGKDAVIIGASNIVGRPMATMLLNAGA---TVSVCHIKT  194 (285)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC---EEEEECTTC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeCCc
Confidence            5789999999999999999999999876   688877754

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=87.27  E-value=1.1  Score=34.86  Aligned_cols=38  Identities=18%  Similarity=-0.004  Sum_probs=30.0

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.+|+|+|+ |-+|...+..+...|.  .+|+++.++..+
T Consensus       190 ~g~~VlV~Ga-G~vG~~avqla~~~Ga--~~Vi~~~~~~~~  227 (373)
T 2fzw_A          190 PGSVCAVFGL-GGVGLAVIMGCKVAGA--SRIIGVDINKDK  227 (373)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTC--SEEEEECSCGGG
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCC--CeEEEEcCCHHH
Confidence            4679999996 8999999877777765  378888887554

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=87.21  E-value=0.93  Score=34.41  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=24.9

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      ++|+|.|++|-+|+.+++.+.+. ++. ++.+...
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~-~~~-elva~~d   33 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAA-DDL-TLSAELD   33 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHC-TTC-EEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC-CCC-EEEEEEc
Confidence            47999999999999999998765 332 5554443

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=87.21  E-value=0.73  Score=33.79  Aligned_cols=38  Identities=21%  Similarity=0.245  Sum_probs=29.6

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCC-CccEEEEEecCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIP-HLKHIYLLVRPKK  103 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~-~~~~V~~l~R~~~  103 (121)
                      .++|.|.|+ |.+|+.++..|++.+. ...+|++..|++.
T Consensus         4 ~m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            4 NIKLGFMGL-GQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            468999987 9999999999999872 0026888888754

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=87.20  E-value=0.95  Score=35.40  Aligned_cols=34  Identities=15%  Similarity=0.045  Sum_probs=27.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEe
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLV   99 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~   99 (121)
                      -.+.+|+|+||+|-+|...+......|.   +|++..
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga---~Vi~~~  196 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGY---IPIATC  196 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCC---EEEEEe
Confidence            3567899999999999998887777765   677765

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=87.15  E-value=1.1  Score=34.39  Aligned_cols=37  Identities=14%  Similarity=0.092  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .++|.|.|| |.+|+.++..|+..+..  .|++.+++...
T Consensus         4 ~~kI~VIGa-G~~G~~ia~~la~~g~~--~V~l~D~~~~~   40 (317)
T 2ewd_A            4 RRKIAVIGS-GQIGGNIAYIVGKDNLA--DVVLFDIAEGI   40 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCC--EEEEECSSSSH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCc--eEEEEeCCchH
Confidence            468999998 99999999999998752  59999987644

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=87.15  E-value=1.1  Score=33.59  Aligned_cols=35  Identities=20%  Similarity=0.298  Sum_probs=30.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++|.|.| .|.+|+.++..|++.|+   +|++..|++..
T Consensus         2 ~~i~iIG-~G~mG~~~a~~l~~~G~---~V~~~dr~~~~   36 (287)
T 3pef_A            2 QKFGFIG-LGIMGSAMAKNLVKAGC---SVTIWNRSPEK   36 (287)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTC---EEEEECSSGGG
T ss_pred             CEEEEEe-ecHHHHHHHHHHHHCCC---eEEEEcCCHHH
Confidence            6788887 59999999999999987   79999997654

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=87.12  E-value=0.84  Score=34.64  Aligned_cols=39  Identities=21%  Similarity=0.261  Sum_probs=31.9

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +.++|.|.|+ |.+|+.++..|++.++...+|++..|++.
T Consensus         2 ~~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~   40 (280)
T 3tri_A            2 NTSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLD   40 (280)
T ss_dssp             CCSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSH
T ss_pred             CCCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHH
Confidence            3478988887 99999999999998864457999998754

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=87.10  E-value=1.1  Score=34.07  Aligned_cols=36  Identities=22%  Similarity=0.210  Sum_probs=31.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.+++|+|.|+ |-+|..+++.+...|.   +|++..|+.
T Consensus       153 l~g~~v~IiG~-G~iG~~~a~~l~~~G~---~V~~~dr~~  188 (293)
T 3d4o_A          153 IHGANVAVLGL-GRVGMSVARKFAALGA---KVKVGARES  188 (293)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCCEEEEEee-CHHHHHHHHHHHhCCC---EEEEEECCH
Confidence            56899999995 8999999999999886   799999875

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=87.05  E-value=0.96  Score=34.17  Aligned_cols=36  Identities=22%  Similarity=0.451  Sum_probs=30.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++|+|.|+ |-+|+.++..|++.+.   +|++..|+.
T Consensus       127 ~~~~~v~iiGa-G~~g~aia~~L~~~g~---~V~v~~r~~  162 (275)
T 2hk9_A          127 VKEKSILVLGA-GGASRAVIYALVKEGA---KVFLWNRTK  162 (275)
T ss_dssp             GGGSEEEEECC-SHHHHHHHHHHHHHTC---EEEEECSSH
T ss_pred             cCCCEEEEECc-hHHHHHHHHHHHHcCC---EEEEEECCH
Confidence            46789999996 7799999999999875   799888874

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=86.94  E-value=0.72  Score=35.91  Aligned_cols=36  Identities=14%  Similarity=0.125  Sum_probs=29.1

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+.+|+|+| +|-+|...+..+...|.   +|++..++..
T Consensus       189 ~g~~VlV~G-~G~vG~~a~qla~~~Ga---~Vi~~~~~~~  224 (363)
T 3uog_A          189 AGDRVVVQG-TGGVALFGLQIAKATGA---EVIVTSSSRE  224 (363)
T ss_dssp             TTCEEEEES-SBHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCC---EEEEEecCch
Confidence            468999999 89999998877777765   7899888643

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=86.89  E-value=1.2  Score=34.92  Aligned_cols=37  Identities=16%  Similarity=0.132  Sum_probs=29.5

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.+|+|+|+ |-+|...+..+...|.   +|+++.+++.+
T Consensus       194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga---~Vi~~~~~~~~  230 (369)
T 1uuf_A          194 PGKKVGVVGI-GGLGHMGIKLAHAMGA---HVVAFTTSEAK  230 (369)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESSGGG
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEeCCHHH
Confidence            4789999998 7799998877666665   69999987654

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=86.88  E-value=1.2  Score=34.91  Aligned_cols=37  Identities=16%  Similarity=0.055  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .++|.|.|| |.+|..++..|+..+..  .|.+.+++...
T Consensus         9 ~~kI~VIGa-G~vG~~lA~~la~~g~~--~V~L~D~~~~~   45 (331)
T 1pzg_A            9 RKKVAMIGS-GMIGGTMGYLCALRELA--DVVLYDVVKGM   45 (331)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCC--EEEEECSSSSH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCC--eEEEEECChhH
Confidence            368999998 99999999999998762  48888887654

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=86.80  E-value=1.1  Score=34.68  Aligned_cols=38  Identities=21%  Similarity=0.434  Sum_probs=31.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +.+++++|.|++| .|+.++..|.+.+.  .+|++..|+..
T Consensus       120 ~~~k~vlvlGaGG-aaraia~~L~~~G~--~~v~v~nRt~~  157 (282)
T 3fbt_A          120 IKNNICVVLGSGG-AARAVLQYLKDNFA--KDIYVVTRNPE  157 (282)
T ss_dssp             CTTSEEEEECSST-THHHHHHHHHHTTC--SEEEEEESCHH
T ss_pred             ccCCEEEEECCcH-HHHHHHHHHHHcCC--CEEEEEeCCHH
Confidence            3578999999865 69999999999875  48999999753

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=86.76  E-value=1  Score=34.12  Aligned_cols=35  Identities=23%  Similarity=0.283  Sum_probs=30.2

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++|.|.|+ |.+|+.++..|++.|+   +|++..|++..
T Consensus        16 ~~I~VIG~-G~mG~~iA~~la~~G~---~V~~~d~~~~~   50 (302)
T 1f0y_A           16 KHVTVIGG-GLMGAGIAQVAAATGH---TVVLVDQTEDI   50 (302)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSCHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC---eEEEEECCHHH
Confidence            57999988 9999999999999987   79999987543

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=86.54  E-value=0.42  Score=37.38  Aligned_cols=37  Identities=16%  Similarity=0.273  Sum_probs=27.8

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+|+|+||+|-+|...+..+...+.  .+|++..++.
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g--~~Vi~~~~~~  207 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTD--LTVIATASRP  207 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCC--SEEEEECSSH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcC--CEEEEEeCCH
Confidence            467899999999999887765544332  2799988864

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=86.40  E-value=0.88  Score=35.24  Aligned_cols=35  Identities=26%  Similarity=0.315  Sum_probs=27.4

Q ss_pred             CeEEEEcCCChHHHHH-HHHH-HHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKIL-VEKL-LRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~l-l~~L-l~~~~~~~~V~~l~R~~~  103 (121)
                      .+|+|+|| |-+|... +..+ ...|.  .+|+++.++..
T Consensus       174 ~~VlV~Ga-G~vG~~a~iqla~k~~Ga--~~Vi~~~~~~~  210 (357)
T 2b5w_A          174 SSAFVLGN-GSLGLLTLAMLKVDDKGY--ENLYCLGRRDR  210 (357)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHCTTCC--CEEEEEECCCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHHHHcCC--cEEEEEeCCcc
Confidence            89999999 9999998 6554 34554  35999999765

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=86.39  E-value=1.2  Score=35.01  Aligned_cols=36  Identities=19%  Similarity=0.236  Sum_probs=30.3

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++|.|+|+ |.+|+.++..|+..+. +.+|++++++.
T Consensus         5 ~~kI~ViGa-G~vG~~~a~~l~~~~~-~~~l~l~D~~~   40 (326)
T 3pqe_A            5 VNKVALIGA-GFVGSSYAFALINQGI-TDELVVIDVNK   40 (326)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSCH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC-CceEEEEecch
Confidence            578999996 9999999999998864 35899998864

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=86.37  E-value=1.1  Score=36.01  Aligned_cols=36  Identities=25%  Similarity=0.204  Sum_probs=30.6

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.+++|+|.|+ |-+|+++++.|.+.|.   +|++.+++.
T Consensus       171 L~GktV~V~G~-G~VG~~~A~~L~~~Ga---kVvv~D~~~  206 (364)
T 1leh_A          171 LEGLAVSVQGL-GNVAKALCKKLNTEGA---KLVVTDVNK  206 (364)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CCcCEEEEECc-hHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            57899999987 8899999999999987   677777653

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=86.32  E-value=1.2  Score=32.70  Aligned_cols=33  Identities=27%  Similarity=0.435  Sum_probs=28.2

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhC-CCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAI-PHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~-~~~~~V~~l~R~~  102 (121)
                      ++|.|.|+ |.+|+.++..|++.+ +   +|++..|++
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~~---~v~~~~r~~   34 (263)
T 1yqg_A            1 MNVYFLGG-GNMAAAVAGGLVKQGGY---RIYIANRGA   34 (263)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSC---EEEEECSSH
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCC---eEEEECCCH
Confidence            47888885 999999999999988 5   788888864

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=86.28  E-value=1.1  Score=33.79  Aligned_cols=34  Identities=15%  Similarity=0.041  Sum_probs=29.5

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++|.|.|+ |.+|+.++..+++.|.   +|++..|++.
T Consensus         5 ~kV~VIGa-G~mG~~iA~~la~~G~---~V~l~d~~~~   38 (283)
T 4e12_A            5 TNVTVLGT-GVLGSQIAFQTAFHGF---AVTAYDINTD   38 (283)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSSHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC---eEEEEeCCHH
Confidence            68999875 9999999999999987   7999988754

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=86.24  E-value=0.94  Score=35.83  Aligned_cols=37  Identities=24%  Similarity=0.366  Sum_probs=30.7

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      ..+.+.+|+|.|++| +|++++..|+..|-  .++.+++.
T Consensus        32 ~~L~~~~VlivG~GG-lG~~ia~~La~~Gv--g~itlvD~   68 (346)
T 1y8q_A           32 KRLRASRVLLVGLKG-LGAEIAKNLILAGV--KGLTMLDH   68 (346)
T ss_dssp             HHHHTCEEEEECCSH-HHHHHHHHHHHHTC--SEEEEECC
T ss_pred             HHHhCCeEEEECCCH-HHHHHHHHHHHcCC--CEEEEEEC
Confidence            456789999999865 79999999999976  48888853

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=86.21  E-value=0.72  Score=35.86  Aligned_cols=35  Identities=26%  Similarity=0.210  Sum_probs=28.6

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHh-CCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRA-IPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~-~~~~~~V~~l~R~~  102 (121)
                      .+.+|+|+|| |-+|...+..+... |.   +|+++.++.
T Consensus       186 ~g~~VlV~Ga-G~vG~~avqlak~~~Ga---~Vi~~~~~~  221 (359)
T 1h2b_A          186 PGAYVAIVGV-GGLGHIAVQLLKVMTPA---TVIALDVKE  221 (359)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCC---EEEEEESSH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCC---eEEEEeCCH
Confidence            4689999999 88999988776666 65   799998864

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=86.20  E-value=1.1  Score=33.89  Aligned_cols=31  Identities=23%  Similarity=0.239  Sum_probs=27.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      |+|.|.|+ |.+|+.++..|.+.++   +|+++.|
T Consensus         1 m~I~iiG~-G~mG~~~a~~L~~~g~---~V~~~~r   31 (335)
T 1txg_A            1 MIVSILGA-GAMGSALSVPLVDNGN---EVRIWGT   31 (335)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC---EEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC---eEEEEEc
Confidence            47888886 9999999999999987   7999888

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=86.19  E-value=1  Score=35.69  Aligned_cols=40  Identities=23%  Similarity=0.298  Sum_probs=33.5

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+++++|+|.|++| +|++++..|++.|-  .++.+++++.
T Consensus       113 q~~L~~~~VlvvG~Gg-lGs~va~~La~aGv--g~i~lvD~D~  152 (353)
T 3h5n_A          113 QDKLKNAKVVILGCGG-IGNHVSVILATSGI--GEIILIDNDQ  152 (353)
T ss_dssp             HHHHHTCEEEEECCSH-HHHHHHHHHHHHTC--SEEEEEECCB
T ss_pred             HHHHhCCeEEEECCCH-HHHHHHHHHHhCCC--CeEEEECCCc
Confidence            4567789999999855 89999999999976  5899998764

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=86.18  E-value=1.1  Score=34.90  Aligned_cols=35  Identities=17%  Similarity=0.175  Sum_probs=29.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+|.|+|| |.+|+.+...|+.++ -+.++.+++..+
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~-~~~el~L~Di~~   35 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNL-DVDEIALVDIAE   35 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHS-CCSEEEEECSSH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCC-CCCEEEEEeCCC
Confidence            68999996 999999999988874 356899998864

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=86.17  E-value=1.1  Score=34.74  Aligned_cols=35  Identities=17%  Similarity=0.181  Sum_probs=29.9

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++|.|+|| |.+|..++..|+..+. +.+|.+++++.
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~-~~el~L~Di~~   35 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGV-AREVVLVDLDR   35 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence            57999998 9999999999888754 46899999874

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=86.16  E-value=1.1  Score=35.13  Aligned_cols=39  Identities=23%  Similarity=0.326  Sum_probs=33.1

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.+++|.|.| .|.+|+.+++.+...|.   +|++..|+...
T Consensus       143 ~l~g~~vgIIG-~G~iG~~vA~~l~~~G~---~V~~~d~~~~~  181 (333)
T 2d0i_A          143 SLYGKKVGILG-MGAIGKAIARRLIPFGV---KLYYWSRHRKV  181 (333)
T ss_dssp             CSTTCEEEEEC-CSHHHHHHHHHHGGGTC---EEEEECSSCCH
T ss_pred             CCCcCEEEEEc-cCHHHHHHHHHHHHCCC---EEEEECCCcch
Confidence            46789999998 59999999999999886   79999987653

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=86.06  E-value=1.2  Score=34.53  Aligned_cols=37  Identities=30%  Similarity=0.366  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .++|.|+|+ |.+|..++..++..+. +.+|++++++..
T Consensus         6 ~~kI~IIGa-G~vG~sla~~l~~~~~-~~ev~l~Di~~~   42 (316)
T 1ldn_A            6 GARVVVIGA-GFVGASYVFALMNQGI-ADEIVLIDANES   42 (316)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC-CCEEEEEeCCcc
Confidence            368999999 9999999999888754 358999999753

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=86.06  E-value=0.68  Score=35.51  Aligned_cols=36  Identities=14%  Similarity=0.066  Sum_probs=28.6

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+.+|+|+|+ |-+|...+..+...|.   +|++..++..
T Consensus       166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga---~Vi~~~~~~~  201 (340)
T 3s2e_A          166 PGQWVVISGI-GGLGHVAVQYARAMGL---RVAAVDIDDA  201 (340)
T ss_dssp             TTSEEEEECC-STTHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC---eEEEEeCCHH
Confidence            5789999998 7799998877776765   7999888643

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=86.06  E-value=1.2  Score=34.57  Aligned_cols=37  Identities=16%  Similarity=0.121  Sum_probs=30.8

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      |+|.|+|| |.+|..++..|+..+. +.+|.++++++..
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~-~~~v~L~D~~~~~   37 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLD-VDEIALVDIAEDL   37 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSC-CSEEEEECSSHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC-CCeEEEEECChHH
Confidence            58999999 9999999999988864 3579999987543

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=86.04  E-value=1.1  Score=34.86  Aligned_cols=38  Identities=21%  Similarity=0.061  Sum_probs=29.7

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.+|+|+|+ |-+|...+..+...|.  .+|++..+++.+
T Consensus       192 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga--~~Vi~~~~~~~~  229 (374)
T 1cdo_A          192 PGSTCAVFGL-GAVGLAAVMGCHSAGA--KRIIAVDLNPDK  229 (374)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--SEEEEECSCGGG
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCC--CEEEEEcCCHHH
Confidence            4679999996 9999998877766665  378888887544

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=86.02  E-value=0.96  Score=36.44  Aligned_cols=34  Identities=12%  Similarity=0.141  Sum_probs=29.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+|.|.| +|++|..++..|++.|+   +|+++.|++.
T Consensus         1 mkI~VIG-~G~vG~~~A~~la~~G~---~V~~~d~~~~   34 (436)
T 1mv8_A            1 MRISIFG-LGYVGAVCAGCLSARGH---EVIGVDVSST   34 (436)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTC---EEEEECSCHH
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            4788887 79999999999999987   7999988643

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=86.01  E-value=1.4  Score=34.71  Aligned_cols=39  Identities=13%  Similarity=0.133  Sum_probs=32.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++.++|.|+|| |.+|..++..|+..+..  +|+++++++..
T Consensus         5 m~~~kI~viGa-G~vG~~~a~~l~~~~~~--~v~L~Di~~~~   43 (324)
T 3gvi_A            5 MARNKIALIGS-GMIGGTLAHLAGLKELG--DVVLFDIAEGT   43 (324)
T ss_dssp             -CCCEEEEECC-SHHHHHHHHHHHHTTCC--EEEEECSSSSH
T ss_pred             CcCCEEEEECC-CHHHHHHHHHHHhCCCC--eEEEEeCCchh
Confidence            35679999998 99999999999888652  79999997654

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=86.00  E-value=1.3  Score=34.44  Aligned_cols=37  Identities=14%  Similarity=0.247  Sum_probs=30.7

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.++|.|+|| |.+|..++..|+..+. +.+|.++++++
T Consensus         5 ~~~KI~IIGa-G~vG~~la~~l~~~~~-~~ei~L~Di~~   41 (317)
T 3d0o_A            5 KGNKVVLIGN-GAVGSSYAFSLVNQSI-VDELVIIDLDT   41 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCS-CSEEEEECSCH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence            4579999999 9999999999988864 35788888864

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=85.99  E-value=1.1  Score=34.63  Aligned_cols=36  Identities=22%  Similarity=0.187  Sum_probs=29.6

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++|.|+|| |++|..++..|+..+. + .|++++++...
T Consensus         3 ~kI~VIGa-G~vG~~~a~~la~~g~-~-~v~L~Di~~~~   38 (309)
T 1ur5_A            3 KKISIIGA-GFVGSTTAHWLAAKEL-G-DIVLLDIVEGV   38 (309)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC-S-EEEEECSSSSH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC-C-eEEEEeCCccH
Confidence            68999999 9999999999988764 2 48888887543

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=85.96  E-value=0.77  Score=35.87  Aligned_cols=38  Identities=21%  Similarity=0.114  Sum_probs=30.4

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.+|+|+|| |-+|...+..+...|.  .+|+++.++..+
T Consensus       193 ~g~~VlV~Ga-G~vG~~a~q~a~~~Ga--~~Vi~~~~~~~~  230 (378)
T 3uko_A          193 PGSNVAIFGL-GTVGLAVAEGAKTAGA--SRIIGIDIDSKK  230 (378)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHHTC--SCEEEECSCTTH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCC--CeEEEEcCCHHH
Confidence            4689999998 8899998887777765  378988887654

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=85.87  E-value=1.1  Score=34.94  Aligned_cols=36  Identities=14%  Similarity=0.151  Sum_probs=30.4

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++|.|+|| |.+|..++..|+..+. +.+|.+++++.
T Consensus         5 ~~KI~IiGa-G~vG~~~a~~l~~~~~-~~el~L~Di~~   40 (318)
T 1ez4_A            5 HQKVVLVGD-GAVGSSYAFAMAQQGI-AEEFVIVDVVK   40 (318)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHcCCC-CCEEEEEeCCc
Confidence            368999999 9999999999988854 46899999864

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=85.86  E-value=0.78  Score=35.42  Aligned_cols=35  Identities=20%  Similarity=0.189  Sum_probs=28.1

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+|+|+|+ |-+|...+..+...|.   +|++..++.
T Consensus       168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga---~Vi~~~~~~  202 (352)
T 1e3j_A          168 LGTTVLVIGA-GPIGLVSVLAAKAYGA---FVVCTARSP  202 (352)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCC---EEEEEcCCH
Confidence            5789999997 8999998877766765   588888764

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=85.85  E-value=0.73  Score=35.67  Aligned_cols=37  Identities=16%  Similarity=0.086  Sum_probs=29.0

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+.+|+|+|| |-+|...+......|.  .+|++..+++.
T Consensus       179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga--~~Vi~~~~~~~  215 (363)
T 3m6i_A          179 LGDPVLICGA-GPIGLITMLCAKAAGA--CPLVITDIDEG  215 (363)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTC--CSEEEEESCHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCC--CEEEEECCCHH
Confidence            4789999998 9999998877666765  25888887643

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=85.79  E-value=1.1  Score=35.38  Aligned_cols=37  Identities=11%  Similarity=0.228  Sum_probs=32.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.|++++|.|++|.+|..++..|+..+.   .|++..|..
T Consensus       163 l~Gk~vvVIG~s~iVG~p~A~lL~~~gA---tVtv~~~~T  199 (300)
T 4a26_A          163 MAGKRAVVLGRSNIVGAPVAALLMKENA---TVTIVHSGT  199 (300)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC---EEEEECTTS
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeCCC
Confidence            5789999999999999999999999876   688887743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	121
d2q46a1	252	c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (	3e-06
d1y1pa1	342	c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo	3e-05
d1rkxa_	356	c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia	4e-05
d2a35a1	212	c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse	5e-05
d2bkaa1	232	c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H	7e-05
d2fr1a1	259	c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI	2e-04
d1qyca_	307	c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta	3e-04
d1hdoa_	205	c.2.1.2 (A:) Biliverdin IX beta reductase {Human (	4e-04
d1oc2a_	346	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	6e-04
d1eq2a_	307	c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer	9e-04
d1gy8a_	383	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	0.001
d2blla1	342	c.2.1.2 (A:316-657) Polymyxin resistance protein A	0.001
d1n2sa_	298	c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct	0.001
d1qyda_	312	c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {	0.002
d1xgka_	350	c.2.1.2 (A:) Negative transcriptional regulator Nm	0.002
d1rpna_	321	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo	0.002
d1z45a2	347	c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep	0.003
d1ek6a_	346	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	0.003
d1orra_	338	c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella	0.003
d1i24a_	393	c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1	0.003
d1r6da_	322	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	0.004
d1e6ua_	315	c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras	0.004
d1udca_	338	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	0.004

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 42.1 bits (97), Expect = 3e-06
 Identities = 11/53 (20%), Positives = 20/53 (37%)

Query: 68  VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDRIH 120
           V VTG +G  G+I+ +KL           L+   +  + +    +    D   
Sbjct: 6   VLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITD 58

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

 Score = 39.4 bits (90), Expect = 3e-05
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 68  VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR-PKKGKAVQERLEAIFEDRIHT 121
           V VTG  GF+   +VE+LL        +    R   K   +Q+R +A +  R  T
Sbjct: 14  VLVTGANGFVASHVVEQLLEHG---YKVRGTARSASKLANLQKRWDAKYPGRFET 65

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

 Score = 39.1 bits (89), Expect = 4e-05
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 62 FFRDASVFVTGGTGFMGKILVEKLLR 87
          F++   VFVTG TGF G  L   L  
Sbjct: 5  FWQGKRVFVTGHTGFKGGWLSLWLQT 30

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.6 bits (88), Expect = 5e-05
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 68  VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102
           V + G TG  G+ L++++L   P L  +    R  
Sbjct: 5   VLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKA 38

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 7e-05
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 59  IQEFFR--DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK 102
           ++E FR  + SVF+ G +G  G++L++++L        + L+ R K
Sbjct: 6   LREDFRMQNKSVFILGASGETGRVLLKEILEQ-GLFSKVTLIGRRK 50

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

 Score = 36.9 bits (84), Expect = 2e-04
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 3/62 (4%)

Query: 60  QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR-PKKGKAVQERLEAIFEDR 118
            E+    +V VTGGTG +G  +   L R      H+ L+ R         E +  +    
Sbjct: 4   DEWKPTGTVLVTGGTGGVGGQIARWLARR--GAPHLLLVSRSGPDADGAGELVAELEALG 61

Query: 119 IH 120
             
Sbjct: 62  AR 63

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

 Score = 36.7 bits (83), Expect = 3e-04
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 68  VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDR 118
           + + G TG++G+ + +  L    H    +LLVR     +  E+ + +   +
Sbjct: 6   ILLIGATGYIGRHVAKASLDL-GH--PTFLLVRESTASSNSEKAQLLESFK 53

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 4e-04
 Identities = 5/21 (23%), Positives = 11/21 (52%)

Query: 68 VFVTGGTGFMGKILVEKLLRA 88
          + + G TG  G   + + ++A
Sbjct: 6  IAIFGATGQTGLTTLAQAVQA 26

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score = 35.7 bits (81), Expect = 6e-04
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 67  SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDRIH 120
           ++ VTGG GF+G   V  +    P +    L      G   +  LEAI  DR+ 
Sbjct: 4   NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGN--KANLEAILGDRVE 55

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

 Score = 35.4 bits (79), Expect = 9e-04
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 68 VFVTGGTGFMGKILVEKLLRAIPH 91
          + VTGG GF+G  +V+ L      
Sbjct: 2  IIVTGGAGFIGSNIVKALNDKGIT 25

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

 Score = 35.2 bits (79), Expect = 0.001
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 68 VFVTGGTGFMGKILVEKLLRAIPH 91
          V V GG G++G   V  LLR   H
Sbjct: 5  VLVCGGAGYIGSHFVRALLRDTNH 28

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

 Score = 34.9 bits (78), Expect = 0.001
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 68 VFVTGGTGFMGKILVEKLLRA 88
          V + G  GF+G  L E+LLR 
Sbjct: 3  VLILGVNGFIGNHLTERLLRE 23

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

 Score = 34.5 bits (77), Expect = 0.001
 Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 8/54 (14%)

Query: 68  VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAV----QERLEAIFED 117
           + + G TG +G  L   L        ++  L    K         + +      
Sbjct: 3   ILLFGKTGQVGWELQRSLAPV----GNLIALDVHSKEFCGDFSNPKGVAETVRK 52

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

 Score = 34.4 bits (77), Expect = 0.002
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 68 VFVTGGTGFMGKILVEKLLRA 88
          V + GGTG++GK +V   +  
Sbjct: 6  VLIVGGTGYIGKRIVNASISL 26

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

 Score = 34.6 bits (78), Expect = 0.002
 Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 3/46 (6%)

Query: 68  VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEA 113
           + V G TG  G  L+        H  H+   V   KG   +E    
Sbjct: 6   IAVVGATGRQGASLIRVAAAV-GH--HVRAQVHSLKGLIAEELQAI 48

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 34.2 bits (77), Expect = 0.002
 Identities = 9/21 (42%), Positives = 10/21 (47%)

Query: 68 VFVTGGTGFMGKILVEKLLRA 88
            VTG TG  G  L + LL  
Sbjct: 3  ALVTGITGQDGAYLAKLLLEK 23

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.9 bits (76), Expect = 0.003
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 68  VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFEDRIH 120
           V VTGG G++G   V +L+           L           RLE + +  I 
Sbjct: 4   VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSV--ARLEVLTKHHIP 54

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (76), Expect = 0.003
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 68 VFVTGGTGFMGKILVEKLLRA 88
          V VTGG G++G   V +LL A
Sbjct: 5  VLVTGGAGYIGSHTVLELLEA 25

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

 Score = 33.9 bits (76), Expect = 0.003
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 66 ASVFVTGGTGFMGKILVEKLLRA 88
          A + +TGG GF+G  L    L  
Sbjct: 1  AKLLITGGCGFLGSNLASFALSQ 23

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 33.8 bits (75), Expect = 0.003
 Identities = 10/43 (23%), Positives = 15/43 (34%)

Query: 68  VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQER 110
           V V GG G+ G      L +    +  +  LVR      +   
Sbjct: 4   VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLE 46

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 33.3 bits (75), Expect = 0.004
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 68 VFVTGGTGFMGKILVEKLLRA 88
          + VTGG GF+G   V +LL  
Sbjct: 3  LLVTGGAGFIGSHFVRQLLAG 23

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

 Score = 33.3 bits (75), Expect = 0.004
 Identities = 6/21 (28%), Positives = 11/21 (52%)

Query: 68 VFVTGGTGFMGKILVEKLLRA 88
          VF+ G  G +G  +  +L + 
Sbjct: 5  VFIAGHRGMVGSAIRRQLEQR 25

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

 Score = 33.4 bits (75), Expect = 0.004
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 68 VFVTGGTGFMGKILVEKLLRA 88
          V VTGG+G++G     +LL+ 
Sbjct: 3  VLVTGGSGYIGSHTCVQLLQN 23

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	121
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	98.98
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	98.73
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	98.72
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	98.72
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	98.7
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	98.69
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	98.67
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	98.66
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	98.62
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	98.62
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	98.61
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	98.58
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.57
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	98.56
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	98.55
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	98.55
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	98.54
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.53
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.52
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	98.52
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	98.51
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	98.5
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	98.49
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	98.47
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.46
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.42
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.37
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	98.35
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	98.31
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	98.24
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.99
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.92
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	97.89
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.79
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	97.78
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.77
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.75
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	97.73
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.71
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.69
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.66
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.66
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	97.64
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	97.63
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	97.62
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	97.59
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	97.59
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	97.58
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	97.58
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	97.58
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.58
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	97.58
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.57
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	97.56
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.56
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.55
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.54
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	97.54
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.53
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.53
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.52
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.52
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	97.52
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.51
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.5
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	97.5
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	97.5
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	97.49
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	97.49
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	97.48
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	97.48
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	97.48
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.47
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.45
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	97.43
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	97.43
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	97.43
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	97.42
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	97.41
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	97.4
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.38
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	97.28
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.24
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	97.22
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	97.09
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	97.08
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	97.01
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	96.98
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	96.96
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.96
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.93
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	96.85
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	96.83
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.79
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.79
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	96.77
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	96.73
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	96.62
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	96.59
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	96.49
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.36
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.3
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.19
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	96.17
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	96.0
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	95.92
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	95.75
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	95.71
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	95.68
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	95.49
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	95.46
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	95.42
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.2
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.01
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	94.79
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	94.77
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	94.66
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	94.63
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.56
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	94.51
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	94.48
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.38
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.29
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	94.23
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.06
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	93.97
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	93.93
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	93.92
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	93.85
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	93.84
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	93.62
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	93.6
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	93.57
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	93.5
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.47
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.42
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	93.37
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	93.27
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	93.22
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	93.22
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	93.18
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	93.14
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	93.14
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	93.0
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	92.91
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	92.9
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	92.82
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	92.8
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.79
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	92.68
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	92.42
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	92.22
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	92.21
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	92.14
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	92.0
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	91.72
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	91.71
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	91.7
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	91.68
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	91.41
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	91.12
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	91.05
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	91.02
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	90.75
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	90.66
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	90.4
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	90.37
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	90.36
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	90.35
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	90.35
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	90.34
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	90.3
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	90.26
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	90.13
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	89.77
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.74
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	89.36
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	89.29
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	89.28
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	89.27
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	89.11
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	89.0
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	88.74
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	88.65
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	88.51
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	88.29
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	88.28
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	88.28
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	88.1
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	88.02
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	87.64
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	87.6
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	87.51
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	87.43
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	87.21
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	87.14
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	86.92
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	86.85
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	86.71
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	86.56
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	86.32
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	86.13
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	85.94
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	85.81
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	85.61
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	85.26
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	84.92
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	84.9
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	84.74
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	84.44
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	84.43
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	83.68
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	82.79
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	82.29
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	82.02
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	81.62
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	81.52
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	81.42
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	81.31
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	81.07
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	80.94
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	80.65
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	80.24
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	80.2

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=98.98  E-value=3.2e-10  Score=85.81  Aligned_cols=42  Identities=29%  Similarity=0.299  Sum_probs=38.1

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+|++||+|||||||||||++++++|++.|+   .|++++|....
T Consensus         3 ~~~~~~KkILVTG~tGfIGs~lv~~Ll~~g~---~V~~~~r~~~~   44 (356)
T d1rkxa_           3 NSFWQGKRVFVTGHTGFKGGWLSLWLQTMGA---TVKGYSLTAPT   44 (356)
T ss_dssp             HHHHTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCSS
T ss_pred             hhhhCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCCCc
Confidence            4689999999999999999999999999987   79999997543

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=98.73  E-value=6.5e-09  Score=75.19  Aligned_cols=38  Identities=24%  Similarity=0.484  Sum_probs=34.1

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCc
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGK  105 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~  105 (121)
                      .|+|+|||||||||++++++|++.|+   +|++++|+....
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~---~V~~l~R~~~~~   40 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH---PTFLLVRESTAS   40 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC---CEEEECCCCCTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC---eEEEEECCCccc
Confidence            47899999999999999999999987   699999976554

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=9.1e-09  Score=75.00  Aligned_cols=41  Identities=27%  Similarity=0.505  Sum_probs=35.6

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++++|+|||||||||++++++|++.+. +.+|++++|++..
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~-~~~v~~~~R~~~~   52 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGL-FSKVTLIGRRKLT   52 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTC-CSEEEEEESSCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCC-CCEEEEEecChhh
Confidence            4678999999999999999999999974 3589999997544

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=98.72  E-value=6.5e-09  Score=79.26  Aligned_cols=37  Identities=30%  Similarity=0.392  Sum_probs=34.0

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +||+||||||+||||++++++|++.|+   +|++++|+..
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~---~V~~~vR~~~   46 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGY---KVRGTARSAS   46 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSHH
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcC---EEEEEeCCch
Confidence            489999999999999999999999987   7999999753

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.70  E-value=6e-09  Score=75.89  Aligned_cols=48  Identities=13%  Similarity=0.184  Sum_probs=37.5

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccHHHHHHHHhh
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAVQERLEAIFE  116 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~~~r~~e~~~  116 (121)
                      |+|+|||||||||++++++|...|+   +|+++.|..........+.+++.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~---~Vi~~~r~~~D~~d~~~~~~~l~   49 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNV---EVIPTDVQDLDITNVLAVNKFFN   49 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSE---EEEEECTTTCCTTCHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC---EEEEeechhccCCCHHHHHHHHH
Confidence            7899999999999999999999887   79999997543332334555554

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.69  E-value=1.1e-08  Score=78.06  Aligned_cols=36  Identities=17%  Similarity=0.241  Sum_probs=32.8

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++|+|+|||||||||++|+++|++.|+   +|++++|..
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~---~V~~~d~~~   49 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH---YVIASDWKK   49 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC---EEEEEeCCC
Confidence            789999999999999999999999987   788887743

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.67  E-value=1.2e-08  Score=76.04  Aligned_cols=36  Identities=33%  Similarity=0.284  Sum_probs=32.6

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      |+|||||||||||++++++|++.|+   +|++++|....
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~---~V~~~~r~~~~   36 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY---RVHGLVARRSS   36 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCCSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC---EEEEEECCCCc
Confidence            6899999999999999999999988   79999996543

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.66  E-value=1.4e-08  Score=76.14  Aligned_cols=34  Identities=32%  Similarity=0.279  Sum_probs=31.6

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |++||||||||||+|++++|++.|+   +|++++|..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~---~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY---EVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC---EEEEEECCC
Confidence            7899999999999999999999998   799999954

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=98.62  E-value=2e-08  Score=73.39  Aligned_cols=39  Identities=31%  Similarity=0.581  Sum_probs=34.1

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCcc
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKA  106 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~  106 (121)
                      .++|+|||||||||++++++|++.|+   +|++++|+.....
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~---~V~~~~R~~~~~~   41 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGH---PTYVLFRPEVVSN   41 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC---CEEEECCSCCSSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEECCCcccc
Confidence            36799999999999999999999987   6999999766543

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.9e-08  Score=75.78  Aligned_cols=34  Identities=35%  Similarity=0.341  Sum_probs=31.1

Q ss_pred             CeE-EEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASV-FVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~V-lVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+| ||||||||||++++++|++.|+   +|++++|..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~---~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY---EVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC---EEEEEECCC
Confidence            578 9999999999999999999998   799999954

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=98.61  E-value=2.1e-08  Score=76.18  Aligned_cols=39  Identities=26%  Similarity=0.305  Sum_probs=35.1

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCc
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGK  105 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~  105 (121)
                      +.|+|+|||||||||++++++|++.|+   +|++++|+....
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~---~V~~l~R~~~~~   40 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH---HVRAQVHSLKGL   40 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC---CEEEEESCSCSH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC---eEEEEECCcchh
Confidence            458999999999999999999999988   699999987663

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=1.4e-08  Score=75.74  Aligned_cols=51  Identities=16%  Similarity=0.242  Sum_probs=34.8

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec-CCCCccHHHHHHHHhhcc
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR-PKKGKAVQERLEAIFEDR  118 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R-~~~~~~~~~r~~e~~~~~  118 (121)
                      .|+|+|||||||||++|+++|++.++   .++++.+ +.-.......+.+++..+
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~---~vi~~~~~~~~~~~~~~~~~~~~~~~   53 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGD---VELVLRTRDELNLLDSRAVHDFFASE   53 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT---EEEECCCTTTCCTTCHHHHHHHHHHH
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcC---EEEEecCchhccccCHHHHHHHHhhc
Confidence            36899999999999999999999987   4554443 322222234455565543

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=6.4e-08  Score=73.33  Aligned_cols=33  Identities=30%  Similarity=0.510  Sum_probs=30.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      |+|+|||||||||+++++.|++.++   +|++++|.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~---~V~~~d~~   33 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH---DVIILDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC---EEEEEECC
Confidence            6899999999999999999999987   79998874

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=2.6e-08  Score=76.52  Aligned_cols=34  Identities=29%  Similarity=0.250  Sum_probs=30.3

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |.|||||||||||++++++|++.|+   +|++++|..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~---~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY---EVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC---EEEEEECCC
Confidence            6889999999999999999999987   799999954

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=98.55  E-value=8.3e-08  Score=71.06  Aligned_cols=31  Identities=26%  Similarity=0.458  Sum_probs=28.6

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      +|||||||||||++++++|++.|+   +|+++++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~---~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI---DLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC---EEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC---EEEEEEC
Confidence            799999999999999999999987   7888875

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=3.7e-08  Score=70.27  Aligned_cols=38  Identities=21%  Similarity=0.245  Sum_probs=34.0

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ..++|+||||||++|++++++|++.|+   +|.+++|++.+
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~---~V~~~~R~~~~   39 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGY---EVTVLVRDSSR   39 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCGGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC---EEEEEEcChhh
Confidence            457899999999999999999999987   89999997544

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.54  E-value=3.5e-08  Score=76.03  Aligned_cols=32  Identities=22%  Similarity=0.363  Sum_probs=29.0

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEe
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLV   99 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~   99 (121)
                      ||+|||||||||||++++++|++.|+   .|++++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~---~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNY---EVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC---EEEEEe
Confidence            68999999999999999999999998   688874

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=1.3e-07  Score=71.78  Aligned_cols=33  Identities=27%  Similarity=0.367  Sum_probs=30.0

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      |.|||||||||||++++++|++.++   +|++++|.
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~---~V~~~d~~   34 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGY---DCVVADNL   34 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC---eEEEEECC
Confidence            6799999999999999999999987   78888764

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=3.9e-08  Score=74.39  Aligned_cols=33  Identities=33%  Similarity=0.442  Sum_probs=29.6

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      .|+|||||||||||++|+++|++.|+   +|++++|
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~---~V~~ld~   34 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGY---LPVVIDN   34 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC---CEEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcC---EEEEEEC
Confidence            37899999999999999999999987   6888864

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=5.2e-08  Score=73.41  Aligned_cols=35  Identities=34%  Similarity=0.490  Sum_probs=30.7

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+|||||||||||++++++|++.++.  +|+++++..
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~--~V~~ld~~~   35 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGS   35 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC--EEEEEESCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCC--EEEEEeCCC
Confidence            68999999999999999999998753  799987753

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.51  E-value=6e-08  Score=73.32  Aligned_cols=37  Identities=27%  Similarity=0.351  Sum_probs=32.7

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +-|+|||||||||||++++++|++.|+   +|++++|...
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~---~V~~~d~~~~   51 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQ---KVVGLDNFAT   51 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECCSS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC---EEEEEECCCC
Confidence            347999999999999999999999988   7999988543

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.50  E-value=4.9e-08  Score=69.44  Aligned_cols=39  Identities=21%  Similarity=0.381  Sum_probs=33.1

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .|+|+|||||||||++++++|++.++. .+|++++|++..
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~-~~v~~~~r~~~~   40 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTL-AKVIAPARKALA   40 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTC-CEEECCBSSCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCe-EEEEEEeCCchh
Confidence            489999999999999999999999753 478888886543

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.49  E-value=7.5e-08  Score=66.96  Aligned_cols=36  Identities=33%  Similarity=0.440  Sum_probs=31.7

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++|+|||||||||++++++|++.|+.+ .|+++.|++
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v-~v~~~~R~~   39 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSA   39 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTC-EEEEEESCH
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcE-EEEEEcCCH
Confidence            689999999999999999999998753 688888864

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=9e-08  Score=72.12  Aligned_cols=33  Identities=27%  Similarity=0.521  Sum_probs=30.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      |+|+||||+||||++++++|++.|+   +|++++|.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~---~V~~~d~~   34 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH---EVTVVDNF   34 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC---EEEEEeCC
Confidence            7899999999999999999999987   79998874

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.46  E-value=9e-08  Score=73.51  Aligned_cols=34  Identities=32%  Similarity=0.646  Sum_probs=29.0

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      +|+|+|||||||||++++++|++.+..  +|+++++
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~--~V~~~D~   35 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDS   35 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEEC
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCC--EEEEEec
Confidence            689999999999999999999985332  7999864

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.42  E-value=5.7e-08  Score=73.69  Aligned_cols=34  Identities=32%  Similarity=0.618  Sum_probs=28.2

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEe
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLV   99 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~   99 (121)
                      .|+|||||||||||++++++|++.++++ +|++++
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v-~v~~~d   35 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDV-HVTVLD   35 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTC-EEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCe-EEEEEe
Confidence            4899999999999999999999998852 344443

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.37  E-value=1.9e-07  Score=71.83  Aligned_cols=33  Identities=21%  Similarity=0.617  Sum_probs=28.6

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      |+|+|||||||||++|+++|++.++.  .|+++.+
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~--vv~~~d~   33 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQD--TVVNIDK   33 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC--EEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCC--EEEEEeC
Confidence            68999999999999999999999884  5666654

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=1.6e-07  Score=68.20  Aligned_cols=31  Identities=32%  Similarity=0.529  Sum_probs=27.5

Q ss_pred             EEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          68 VFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        68 VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      |+||||+||||++++++|++.|+.  +|+++.+
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~--~V~~~d~   32 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGIT--DILVVDN   32 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCC--CEEEEEC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCC--eEEEEEC
Confidence            899999999999999999999863  6888764

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=98.31  E-value=1.8e-07  Score=67.82  Aligned_cols=32  Identities=22%  Similarity=0.183  Sum_probs=26.3

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      |+|+|||||||||++++++|.+.++    ++++.+.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~----~v~~~~~   32 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGN----LIALDVH   32 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSE----EEEECTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC----EEEEECC
Confidence            6899999999999999999998864    4444543

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.24  E-value=6.1e-07  Score=67.23  Aligned_cols=35  Identities=31%  Similarity=0.507  Sum_probs=29.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCcc---EEEEEec
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLK---HIYLLVR  100 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~---~V~~l~R  100 (121)
                      |+|+|||||||||++++++|++.|+.+.   +|+.+.+
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~   38 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDS   38 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeC
Confidence            6899999999999999999999987532   5666654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.99  E-value=4.3e-06  Score=59.34  Aligned_cols=40  Identities=20%  Similarity=0.130  Sum_probs=35.9

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      -++||+|+||||+|.||..+++.|++.|.   +|++..|+...
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~---~V~~~~r~~~~   59 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA---EVVLCGRKLDK   59 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhcc---chhhcccchHH
Confidence            35899999999999999999999999987   79999998543

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.92  E-value=6.6e-06  Score=61.29  Aligned_cols=41  Identities=22%  Similarity=0.232  Sum_probs=37.1

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ..++||+++||||+|-||.+++++|++.|.   +|++..|+...
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga---~Vii~~r~~~~   61 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGA---QCVIASRKMDV   61 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEECCHHH
Confidence            468999999999999999999999999997   79999997543

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.6e-05  Score=57.68  Aligned_cols=39  Identities=26%  Similarity=0.372  Sum_probs=36.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++||.++||||++-||..++++|++.|.   +|++..|+...
T Consensus         3 lkGKvalITGas~GIG~aia~~la~~G~---~V~~~~r~~~~   41 (248)
T d2o23a1           3 VKGLVAVITGGASGLGLATAERLVGQGA---SAVLLDLPNSG   41 (248)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECTTSS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCChHH
Confidence            6899999999999999999999999998   79999998655

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.79  E-value=2.1e-05  Score=58.02  Aligned_cols=40  Identities=20%  Similarity=0.330  Sum_probs=36.5

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      -++||+++||||++-||..+++.|++.|.   +|++..|+...
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga---~V~i~~r~~~~   45 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGA---NVAVIYRSAAD   45 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTE---EEEEEESSCTT
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHHH
Confidence            46899999999999999999999999987   79999998655

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=97.78  E-value=2.4e-05  Score=57.27  Aligned_cols=39  Identities=5%  Similarity=0.091  Sum_probs=35.2

Q ss_pred             hhcCCeEEEEcCCC--hHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTG--FMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatG--fIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++||+++||||+|  -||..++++|++.|.   +|++..|+..
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga---~V~i~~r~~~   42 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGA---TLAFTYLNES   42 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTC---EEEEEESSTT
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCC---EEEEEeCCHH
Confidence            57999999999987  599999999999998   7999999854

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.6e-05  Score=58.85  Aligned_cols=39  Identities=23%  Similarity=0.395  Sum_probs=36.0

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .++||+++||||++-||.+++++|++.|.   +|++..|+..
T Consensus        11 ~L~GK~alITGassGIG~aiA~~la~~G~---~Vil~~r~~~   49 (269)
T d1xu9a_          11 MLQGKKVIVTGASKGIGREMAYHLAKMGA---HVVVTARSKE   49 (269)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            48999999999999999999999999997   7999999754

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.75  E-value=1.8e-05  Score=58.67  Aligned_cols=38  Identities=29%  Similarity=0.464  Sum_probs=35.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++||+++||||++-||.+++++|++.|.   +|++..|+..
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~---~V~i~~r~~~   41 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGA---RVYTCSRNEK   41 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            6899999999999999999999999998   7999999753

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=97.73  E-value=2.5e-05  Score=57.80  Aligned_cols=39  Identities=10%  Similarity=0.202  Sum_probs=35.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++||+|+||||++-||..++++|++.|.   +|+++.|....
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la~~G~---~vii~~r~~~~   41 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELVKRNL---KNFVILDRVEN   41 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCC---SEEEEEESSCC
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCC---EEEEEECCccc
Confidence            6899999999999999999999999987   58888887655

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=2.6e-05  Score=57.74  Aligned_cols=40  Identities=25%  Similarity=0.315  Sum_probs=36.0

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +.|+||+++||||++-||.++++.|++.|.   +|++..|+..
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~---~Vv~~~r~~~   45 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALVQQGL---KVVGCARTVG   45 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            358999999999999999999999999997   7999999743

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=2.3e-05  Score=57.58  Aligned_cols=38  Identities=24%  Similarity=0.315  Sum_probs=35.1

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++||+++||||++-||.+++++|++.|.   +|++..|+.
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~---~V~~~~r~~   41 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGA---RVVAVSRTQ   41 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEECCH
Confidence            47999999999999999999999999997   799999974

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.66  E-value=3e-05  Score=57.28  Aligned_cols=39  Identities=23%  Similarity=0.244  Sum_probs=35.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++||+++||||++-||..+++.|++.|.   +|++..|+...
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga---~V~i~~r~~~~   41 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGC---SVVVASRNLEE   41 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHHH
Confidence            5899999999999999999999999997   79999997543

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.66  E-value=3.9e-05  Score=56.60  Aligned_cols=40  Identities=25%  Similarity=0.389  Sum_probs=36.2

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .++||+++||||++-||..++++|++.|.   +|++..|+...
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~---~V~~~~~~~~~   41 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGA---LVALCDLRPEG   41 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSTTH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHHH
Confidence            47899999999999999999999999997   79999997643

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=4.9e-05  Score=55.08  Aligned_cols=40  Identities=15%  Similarity=0.196  Sum_probs=35.2

Q ss_pred             hhcCCeEEEEcCCC--hHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          62 FFRDASVFVTGGTG--FMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        62 ~~~~~~VlVTGatG--fIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++||+++||||+|  -||.++++.|++.|.   +|++..|+...
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~---~V~i~~~~~~~   43 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGA---ELAFTYQNDKL   43 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC---EEEEEESSTTT
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCC---EEEEEeCCHHH
Confidence            57899999999998  689999999999997   78888997543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=97.63  E-value=3.9e-05  Score=56.21  Aligned_cols=38  Identities=16%  Similarity=0.280  Sum_probs=35.0

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++||+++||||++-||..++++|++.|.   +|++..|+.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~---~V~~~~r~~   39 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGA---SLVAVDREE   39 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            47899999999999999999999999998   799999974

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=97.62  E-value=3.3e-05  Score=57.21  Aligned_cols=39  Identities=18%  Similarity=0.307  Sum_probs=35.5

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.++||+++||||++-||..++++|++.|.   +|++..|+.
T Consensus         2 nrL~gKvalITGas~GIG~aia~~la~~Ga---~V~i~~r~~   40 (268)
T d2bgka1           2 NRLQDKVAIITGGAGGIGETTAKLFVRYGA---KVVIADIAD   40 (268)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            357999999999999999999999999987   799999964

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=3.4e-05  Score=56.71  Aligned_cols=38  Identities=18%  Similarity=0.267  Sum_probs=34.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++||+++||||++-||.++++.|++.|.   +|++..|+.+
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~---~Vv~~~r~~~   39 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGA---KVIGTATSEN   39 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC---EEEEEESSHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEeCCHH
Confidence            6899999999999999999999999998   7999999743

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.59  E-value=4.5e-05  Score=56.08  Aligned_cols=37  Identities=14%  Similarity=0.108  Sum_probs=32.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.||+++||||++-||.++++.|++.|.   +|++..|..
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~---~Vvi~~~~~   40 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGA---SVVVNYGSS   40 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEcCCC
Confidence            6899999999999999999999999998   677766643

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.58  E-value=4e-05  Score=56.20  Aligned_cols=39  Identities=26%  Similarity=0.329  Sum_probs=35.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++||+++||||++-||..++++|++.|.   +|++..|+...
T Consensus         5 l~gK~~lITGas~GIG~aia~~la~~Ga---~V~~~~r~~~~   43 (237)
T d1uzma1           5 FVSRSVLVTGGNRGIGLAIAQRLAADGH---KVAVTHRGSGA   43 (237)
T ss_dssp             CCCCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSSCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCcch
Confidence            6899999999999999999999999997   79999996543

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.58  E-value=3.7e-05  Score=56.75  Aligned_cols=38  Identities=16%  Similarity=0.134  Sum_probs=35.0

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++||+++||||++-||.++++.|++.|.   +|++..|+.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~---~V~~~~r~~   40 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGA---KVVFGDILD   40 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            47899999999999999999999999998   799999974

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.58  E-value=3.2e-05  Score=57.04  Aligned_cols=37  Identities=14%  Similarity=0.231  Sum_probs=34.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++||+++||||++-||.++++.|++.|.   +|++..|+.
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga---~V~~~~r~~   39 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGA---RVAIADINL   39 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTE---EEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            6899999999999999999999999987   799999974

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.58  E-value=4.5e-05  Score=50.95  Aligned_cols=35  Identities=31%  Similarity=0.322  Sum_probs=31.9

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+|.|+||+|.+|+.+++.|++.|+   +|.+..|++.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~---~V~l~~R~~e   35 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGH---EIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC---EEEEEESSHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            6899999999999999999999998   7999999754

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=97.58  E-value=4.6e-05  Score=56.58  Aligned_cols=38  Identities=18%  Similarity=0.256  Sum_probs=35.2

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++||+++||||++-||.+++++|++.|.   +|++..|+.
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~---~Vv~~~r~~   41 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKA---KVVVNYRSK   41 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            47999999999999999999999999987   799999974

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.57  E-value=4.7e-05  Score=56.26  Aligned_cols=39  Identities=26%  Similarity=0.268  Sum_probs=35.4

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .++||+++||||++-||..+++.|++.|.   +|++..|+..
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga---~V~~~~r~~~   40 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGT---AIALLDMNRE   40 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            47899999999999999999999999997   7999999743

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=97.56  E-value=5.1e-05  Score=56.53  Aligned_cols=37  Identities=22%  Similarity=0.506  Sum_probs=34.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++||+++||||++-||.+++++|++.|.   +|++..|+.
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga---~V~i~~r~~   39 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGA---KVAVLDKSA   39 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            6899999999999999999999999997   799999974

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.56  E-value=3.4e-05  Score=56.87  Aligned_cols=39  Identities=18%  Similarity=0.245  Sum_probs=35.5

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.++||+++||||++-||.++++.|++.|.   +|++..|+.
T Consensus         2 nrL~gK~alVTGas~GIG~aia~~la~~Ga---~V~~~~r~~   40 (251)
T d1zk4a1           2 NRLDGKVAIITGGTLGIGLAIATKFVEEGA---KVMITGRHS   40 (251)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            357999999999999999999999999997   799999964

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.55  E-value=5.8e-05  Score=54.86  Aligned_cols=37  Identities=19%  Similarity=0.319  Sum_probs=34.1

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++||+++||||++-||..+++.|++.|.   +|++..|+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga---~V~~~~r~~   38 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGA---EVTICARNE   38 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            5899999999999999999999999997   799999963

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.54  E-value=5.4e-05  Score=55.98  Aligned_cols=38  Identities=29%  Similarity=0.414  Sum_probs=34.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++||+++||||++-||..+++.|++.|.   +|++..|+..
T Consensus         6 L~GK~alITGas~GIG~aia~~la~~Ga---~V~~~~r~~~   43 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELASLGA---SVYTCSRNQK   43 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            5899999999999999999999999987   7999999643

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.54  E-value=9e-05  Score=54.69  Aligned_cols=40  Identities=15%  Similarity=0.110  Sum_probs=35.3

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ..-++||+++||||++-||..+++.|++.|.   +|++..|+.
T Consensus        13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga---~Vvi~~~~~   52 (272)
T d1g0oa_          13 SASLEGKVALVTGAGRGIGREMAMELGRRGC---KVIVNYANS   52 (272)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEeCCc
Confidence            3448999999999999999999999999998   688887764

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=5.6e-05  Score=55.72  Aligned_cols=40  Identities=18%  Similarity=0.236  Sum_probs=36.0

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.||+++||||++=||.+++++|++.|.   +|++..|+..+
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~---~V~l~~r~~~~   43 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKS---KLVLWDINKHG   43 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHHH
Confidence            36899999999999999999999999997   79999997543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=3.8e-05  Score=56.78  Aligned_cols=38  Identities=13%  Similarity=0.121  Sum_probs=34.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++||+++||||++-||.+++++|++.|.   +|++..|+..
T Consensus         9 L~gK~alITGas~GIG~aia~~la~~Ga---~V~~~~r~~~   46 (255)
T d1fmca_           9 LDGKCAIITGAGAGIGKEIAITFATAGA---SVVVSDINAD   46 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTC---EEEEEESCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            6899999999999999999999999997   7999999743

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=5.9e-05  Score=57.04  Aligned_cols=40  Identities=25%  Similarity=0.404  Sum_probs=36.4

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ..++||+++||||++-||.++++.|++.|.   +|++..|+..
T Consensus         8 g~L~gKvalITGas~GIG~aia~~la~~Ga---~Vvi~~r~~~   47 (297)
T d1yxma1           8 GLLQGQVAIVTGGATGIGKAIVKELLELGS---NVVIASRKLE   47 (297)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            468999999999999999999999999997   7999999753

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=6.3e-05  Score=55.15  Aligned_cols=37  Identities=22%  Similarity=0.284  Sum_probs=34.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++||+++||||++-||..++++|++.|.   +|++..|+.
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga---~V~~~~r~~   39 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGA---KVVAVTRTN   39 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            6899999999999999999999999997   799999974

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.52  E-value=4.6e-05  Score=56.55  Aligned_cols=39  Identities=15%  Similarity=0.266  Sum_probs=35.5

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .++||+++||||++=||..+++.|++.|.   +|++..|+..
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga---~V~l~~r~~~   40 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGA---NVTITGRSSE   40 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            37899999999999999999999999997   7999999753

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=5.5e-05  Score=55.48  Aligned_cols=38  Identities=8%  Similarity=0.031  Sum_probs=34.9

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++||+++||||++-||..+++.|++.|.   +|++..|++
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~---~Vi~~~r~~   40 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGA---KVIATDINE   40 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEeCCH
Confidence            37899999999999999999999999997   799999964

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.50  E-value=4.8e-05  Score=56.32  Aligned_cols=38  Identities=29%  Similarity=0.347  Sum_probs=34.8

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++||+++||||++-||..+++.|++.|.   +|++..|+..
T Consensus         6 LkgK~alVTGas~GIG~aiA~~la~~Ga---~V~~~~r~~~   43 (259)
T d1xq1a_           6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA---VIHTCARNEY   43 (259)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            5899999999999999999999999997   7999999753

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.50  E-value=4.9e-05  Score=56.57  Aligned_cols=38  Identities=18%  Similarity=0.288  Sum_probs=34.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++||+++||||++-||..++++|++.|.   +|++..|+..
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga---~V~~~~r~~~   39 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGA---QVTITGRNED   39 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            6899999999999999999999999987   7999999753

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.50  E-value=9.2e-05  Score=52.60  Aligned_cols=37  Identities=24%  Similarity=0.310  Sum_probs=33.4

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +|+++||||++-||.+++++|++.|.   +|++..|+...
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga---~V~i~~~~~~~   37 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGY---RVVVLDLRREG   37 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC---EEEEEESSCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCccc
Confidence            48999999999999999999999998   79999987654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.49  E-value=5.3e-05  Score=55.91  Aligned_cols=39  Identities=15%  Similarity=0.227  Sum_probs=35.6

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .++||.++||||++-||..++++|++.|.   +|++..|+..
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga---~V~~~~r~~~   40 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGA---KVTITGRHAE   40 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            47899999999999999999999999997   7999999753

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.49  E-value=4.2e-05  Score=56.49  Aligned_cols=39  Identities=21%  Similarity=0.205  Sum_probs=35.4

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.++||+++||||++-||..+++.|++.|.   +|++..|+.
T Consensus         2 nrL~gK~alITGas~GIG~aia~~la~~Ga---~V~~~~~~~   40 (253)
T d1hxha_           2 NRLQGKVALVTGGASGVGLEVVKLLLGEGA---KVAFSDINE   40 (253)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            357999999999999999999999999997   799999864

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=97.48  E-value=6e-05  Score=54.64  Aligned_cols=39  Identities=8%  Similarity=0.006  Sum_probs=33.9

Q ss_pred             hhcCCeEEEEcCCCh--HHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGF--MGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGf--IGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++||+++||||+|.  ||.+++++|++.|.   +|++..|+..
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga---~Vil~~~~~~   43 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA---QLVLTGFDRL   43 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC---EEEEEECSCH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC---EEEEEeCChH
Confidence            578999999998764  99999999999997   7888888753

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.48  E-value=8.7e-05  Score=53.76  Aligned_cols=36  Identities=19%  Similarity=0.186  Sum_probs=32.3

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++|+|+||||+|-||.+++++|++.|.   +|+++.|..
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~---~V~~~~~~~   36 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNW---WVASIDVVE   36 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC---EEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            589999999999999999999999987   688887754

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=97.48  E-value=6.4e-05  Score=55.32  Aligned_cols=37  Identities=22%  Similarity=0.125  Sum_probs=34.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++||+++||||++=||.+++++|++.|.   +|++..|+.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga---~V~~~~r~~   38 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGA---DIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC---EEEEECCSC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            6899999999999999999999999997   799999864

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.47  E-value=8.4e-05  Score=54.45  Aligned_cols=37  Identities=16%  Similarity=0.267  Sum_probs=34.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++||+++||||++-||..++++|++.|.   +|++..|+.
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~---~V~~~~r~~   39 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGA---RLVACDIEE   39 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            6899999999999999999999999997   799999974

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=8.9e-05  Score=54.71  Aligned_cols=38  Identities=18%  Similarity=0.273  Sum_probs=35.0

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++||+++||||++-||.++++.|++.|.   +|++..|+.
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga---~V~i~~r~~   40 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGA---RVVICDKDE   40 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            57899999999999999999999999997   799999874

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.43  E-value=0.00011  Score=53.54  Aligned_cols=38  Identities=21%  Similarity=0.261  Sum_probs=33.3

Q ss_pred             hcCCeEEEEcCCC--hHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTG--FMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatG--fIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++||+++||||+|  =||..++++|++.|.   +|++..|+..
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga---~V~i~~~~~~   45 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGA---EVALSYQAER   45 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTC---EEEEEESSGG
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCC---EEEEEeCcHH
Confidence            6899999999998  499999999999997   6888888743

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=97.43  E-value=0.0001  Score=54.02  Aligned_cols=39  Identities=18%  Similarity=0.251  Sum_probs=35.5

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .++||+++||||++-||..+++.|++.|.   +|++..|+..
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga---~V~~~~~~~~   40 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGA---DIAIADLVPA   40 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCch
Confidence            47899999999999999999999999998   7999998754

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.43  E-value=6.5e-05  Score=55.26  Aligned_cols=38  Identities=21%  Similarity=0.386  Sum_probs=34.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++||.++||||++-||.+++++|++.|.   +|++..|+..
T Consensus         8 lenKvalITGas~GIG~a~a~~la~~Ga---~V~~~~r~~~   45 (251)
T d2c07a1           8 GENKVALVTGAGRGIGREIAKMLAKSVS---HVICISRTQK   45 (251)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSS---EEEEEESSHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEECCHH
Confidence            5799999999999999999999999987   7999999643

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=9.6e-05  Score=54.27  Aligned_cols=38  Identities=21%  Similarity=0.239  Sum_probs=34.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+||+++||||++-||..+++.|++.|.   +|++..|+..
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga---~V~i~~r~~~   38 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGA---KVALVDWNLE   38 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            3689999999999999999999999997   7999999743

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=97.41  E-value=9.5e-05  Score=54.76  Aligned_cols=38  Identities=18%  Similarity=0.178  Sum_probs=34.8

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++||+++||||++=||.+++++|++.|.   +|++..|+.
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga---~V~~~~r~~   39 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGA---RVVLADVLD   39 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            36899999999999999999999999987   799999974

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=97.40  E-value=0.00014  Score=52.70  Aligned_cols=39  Identities=33%  Similarity=0.463  Sum_probs=33.5

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |=.+.+++||||+|-||.+++++|++.|..  .|+++.|+.
T Consensus         6 ~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~--~vvl~~R~~   44 (259)
T d2fr1a1           6 WKPTGTVLVTGGTGGVGGQIARWLARRGAP--HLLLVSRSG   44 (259)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHHTCS--EEEEEESSG
T ss_pred             cCCcCEEEEECCCcHHHHHHHHHHHHCCCC--EEEEEeCCc
Confidence            335679999999999999999999999873  688888863

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.38  E-value=0.00012  Score=54.03  Aligned_cols=38  Identities=24%  Similarity=0.363  Sum_probs=35.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++||+++||||++=||..+++.|++.|.   +|++..|+..
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga---~V~i~~r~~~   39 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGA---KLSLVDVSSE   39 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            6899999999999999999999999997   7999999753

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.28  E-value=0.00016  Score=52.08  Aligned_cols=36  Identities=19%  Similarity=0.290  Sum_probs=32.2

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ..+|+||||+|-||..++++|++.|+   +|+++.|+..
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~---~V~~~~~~~~   37 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGY---TVLNIDLSAN   37 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE---EEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCch
Confidence            35799999999999999999999987   7999999754

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.24  E-value=0.00022  Score=52.28  Aligned_cols=37  Identities=19%  Similarity=0.294  Sum_probs=33.3

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +||.++||||++-||..++++|++.|.   +|++..|+..
T Consensus         1 DgKValITGas~GIG~aia~~la~~Ga---~V~i~~r~~~   37 (257)
T d2rhca1           1 DSEVALVTGATSGIGLEIARRLGKEGL---RVFVCARGEE   37 (257)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            478899999999999999999999997   7999999743

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.22  E-value=0.00026  Score=50.72  Aligned_cols=35  Identities=14%  Similarity=0.040  Sum_probs=31.2

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |.|+||||++-||..++++|++.|.   +|++..|+..
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga---~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGH---QIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECChH
Confidence            5689999999999999999999998   7999988643

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.09  E-value=0.0003  Score=51.05  Aligned_cols=40  Identities=30%  Similarity=0.341  Sum_probs=33.7

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ..|+|+||||++=||.+++++|++.|.. ..|++..|+...
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~-~~Vi~~~R~~~~   41 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNI-RHIIATARDVEK   41 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTC-CEEEEEESSGGG
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCC-CEEEEEeCCHHH
Confidence            4589999999999999999999998752 268888887644

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.08  E-value=0.00054  Score=49.54  Aligned_cols=40  Identities=25%  Similarity=0.355  Sum_probs=32.3

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCc
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGK  105 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~  105 (121)
                      |+|+||||++=||.+++++|++....-.+|++..|+....
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~   42 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQA   42 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence            6899999999999999999986322223899999987664

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.01  E-value=0.00032  Score=53.00  Aligned_cols=38  Identities=18%  Similarity=0.146  Sum_probs=34.0

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++||+++||||++-||..++++|++.|.   +|++..|+.
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga---~Vvi~d~~~   41 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGA---LVVVNDLGG   41 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC---EEEEECCCB
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCC---EEEEEeCCc
Confidence            36899999999999999999999999998   788887753

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00049  Score=47.44  Aligned_cols=38  Identities=13%  Similarity=0.228  Sum_probs=29.6

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhC-CCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAI-PHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~-~~~~~V~~l~R~~~  103 (121)
                      ++|.|.||||++|+.+++.|+.+. ..+.+++++.++..
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s   40 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQL   40 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSST
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccc
Confidence            479999999999999999988753 23457888876543

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.96  E-value=0.00047  Score=50.42  Aligned_cols=36  Identities=19%  Similarity=0.175  Sum_probs=32.2

Q ss_pred             hcCCeEEEEcCCC--hHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTG--FMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatG--fIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ++||+++||||+|  -||..+++.|++.|.   +|++..|+
T Consensus         6 L~gK~alVTGass~~GIG~aiA~~la~~Ga---~Vvi~~~~   43 (297)
T d1d7oa_           6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGA---EILVGTWV   43 (297)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHHTTC---EEEEEEEH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCC---EEEEEeCc
Confidence            6899999999987  699999999999997   68887774

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.96  E-value=0.00037  Score=49.48  Aligned_cols=41  Identities=34%  Similarity=0.451  Sum_probs=30.6

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCccH
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKAV  107 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~~  107 (121)
                      ++|.|.||||++|.++++.|.++ |++.-+.+..|+..+...
T Consensus         2 ikVaIvGATGyvG~eLirlL~~H-P~~ei~~l~s~~~aG~~i   42 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNH-PEAKITYLSSRTYAGKKL   42 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHC-TTEEEEEEECSTTTTSBH
T ss_pred             eEEEEECCCcHHHHHHHHHHHhC-CCceEEEeeccccCCCcc
Confidence            47999999999999999988776 766555555555555443

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.93  E-value=0.00061  Score=45.49  Aligned_cols=36  Identities=19%  Similarity=0.310  Sum_probs=31.7

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .|+|+|.|| |++|+++++.|.+.|+   +|++..|+..+
T Consensus         2 ~K~IliiGa-G~~G~~~a~~L~~~g~---~V~v~dr~~~~   37 (182)
T d1e5qa1           2 TKSVLMLGS-GFVTRPTLDVLTDSGI---KVTVACRTLES   37 (182)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTC---EEEEEESCHHH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEECChHH
Confidence            589999987 9999999999999987   79999998543

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.85  E-value=0.00096  Score=45.48  Aligned_cols=36  Identities=33%  Similarity=0.324  Sum_probs=27.3

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      .++|.|.||||++|.++++.|.++++...++..+..
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s   37 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLAS   37 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEee
Confidence            378999999999999999998765433346665543

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.83  E-value=0.00052  Score=49.95  Aligned_cols=39  Identities=21%  Similarity=0.227  Sum_probs=33.6

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHH---hCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLR---AIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~---~~~~~~~V~~l~R~~~  103 (121)
                      -++||.++||||++-||..++++|++   .|.   +|++..|+..
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~---~Vv~~~r~~~   44 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGS---VMLVSARSES   44 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTC---EEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCC---EEEEEECCHH
Confidence            46899999999999999999999987   455   7999999753

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.79  E-value=0.00086  Score=48.96  Aligned_cols=35  Identities=17%  Similarity=0.162  Sum_probs=31.0

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |.++||||++=||..++++|++.|.   +|++..|+..
T Consensus         2 KValITGas~GIG~aia~~la~~Ga---~V~~~~r~~~   36 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGF---AVAIADYNDA   36 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCC---EEEEEECCHH
Confidence            4569999999999999999999997   7999999753

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.79  E-value=0.00087  Score=46.75  Aligned_cols=34  Identities=29%  Similarity=0.525  Sum_probs=26.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      ++|.|.|||||+|.++++-|..+ |++.-..+..+
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~H-P~~ei~~l~~~   35 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRH-PHMTITALTVS   35 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHC-TTEEEEEEEEE
T ss_pred             cEEEEECcccHHHHHHHHHHHhC-CCCceEeeEee
Confidence            47999999999999999988876 76543344444

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.77  E-value=0.00091  Score=47.06  Aligned_cols=42  Identities=21%  Similarity=0.436  Sum_probs=30.6

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCcc
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGKA  106 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~~  106 (121)
                      +..+|.|.|||||+|.++++-|.++ |.+.-+.+..++..+..
T Consensus         4 ~kikVaIlGATGyvG~elirLL~~H-P~~ei~~l~S~~~aG~~   45 (183)
T d2cvoa1           4 EEVRIAVLGASGYTGAEIVRLLANH-PQFRIKVMTADRKAGEQ   45 (183)
T ss_dssp             SCEEEEEESCSSHHHHHHHHHHTTC-SSEEEEEEECSTTTTSC
T ss_pred             CccEEEEECcccHHHHHHHHHHHhC-CCceEEEEeccccCCCc
Confidence            3458999999999999999998887 76544444445544443

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=96.73  E-value=0.0013  Score=45.49  Aligned_cols=35  Identities=17%  Similarity=0.303  Sum_probs=26.9

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhC-CCccEEEEEec
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAI-PHLKHIYLLVR  100 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~-~~~~~V~~l~R  100 (121)
                      |+|.|.|||||+|+++++.|+++. +....+..+.-
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss   36 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFST   36 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEES
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecc
Confidence            589999999999999999998743 22346666554

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.62  E-value=0.0014  Score=46.80  Aligned_cols=34  Identities=18%  Similarity=0.291  Sum_probs=30.8

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +.+||||++-||..++++|++.|.   +|++..|+..
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~---~Vvi~~r~~~   36 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGF---RVVVHYRHSE   36 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC---EEEEEECCch
Confidence            569999999999999999999998   7999999754

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.0011  Score=48.55  Aligned_cols=37  Identities=30%  Similarity=0.364  Sum_probs=31.4

Q ss_pred             CCeE-EEEcCCChHHHHHHHHHHHh-CCCccEEEEEecCCCC
Q psy3445          65 DASV-FVTGGTGFMGKILVEKLLRA-IPHLKHIYLLVRPKKG  104 (121)
Q Consensus        65 ~~~V-lVTGatGfIGs~ll~~Ll~~-~~~~~~V~~l~R~~~~  104 (121)
                      ||+| +||||++=||.+++++|++. +.   +|++..|+..+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~---~Vi~~~r~~~~   40 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSG---DVVLTARDVTR   40 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS---EEEEEESSHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCC---EEEEEECCHHH
Confidence            5666 89999999999999999987 55   79999997543

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.0024  Score=39.53  Aligned_cols=38  Identities=21%  Similarity=0.273  Sum_probs=32.5

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++.+|+|+||+|-+|+..+..+...+.   +|++..+++++
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~---~Vi~~t~s~~k   68 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGY---QVVAVSGREST   68 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTC---CEEEEESCGGG
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCC---eEEEEECCHHH
Confidence            578999999999999999987777765   79999998655

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.36  E-value=0.0023  Score=43.72  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=25.3

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEe
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLV   99 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~   99 (121)
                      =+|.|.|||||+|.++++.|.++.....++..+.
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~   35 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLA   35 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEec
Confidence            3799999999999999987776642234555554

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0035  Score=41.53  Aligned_cols=35  Identities=17%  Similarity=0.246  Sum_probs=31.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      |+|+|.|+ |.+|+.+...|++.|+   .|.++.|+...
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~---~V~~~~r~~~~   35 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGH---EVQGWLRVPQP   35 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSSCCS
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC---ceEEEEcCHHH
Confidence            68999999 9999999999999987   79999997654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.19  E-value=0.0033  Score=41.23  Aligned_cols=34  Identities=24%  Similarity=0.254  Sum_probs=30.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+|+|+|+ |.+|+.+++.|.+.|.   .|+++.+++.
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~---~v~vid~d~~   34 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGH---DIVLIDIDKD   34 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC---CcceecCChh
Confidence            68999998 9999999999999987   7999988754

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.17  E-value=0.0038  Score=45.29  Aligned_cols=32  Identities=25%  Similarity=0.217  Sum_probs=27.8

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      +.|+||||++-||.+++++|++.|.   +|++..+
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga---~V~i~~~   33 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGC---KVLVNYA   33 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC---EEEEEES
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEeC
Confidence            3689999999999999999999987   6776654

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.00  E-value=0.0028  Score=45.97  Aligned_cols=35  Identities=20%  Similarity=-0.002  Sum_probs=31.6

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++||||++-||..++..|++.|.   +|++..|+...
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga---~V~i~~r~~~~   36 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGH---TVACHDESFKQ   36 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC---EEEECCGGGGS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCHHH
Confidence            789999999999999999999997   79999887554

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0057  Score=45.21  Aligned_cols=38  Identities=24%  Similarity=0.295  Sum_probs=30.3

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |.|+||||++=||.+++++|++.|.++..|....|+..
T Consensus         3 kVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~   40 (285)
T d1jtva_           3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLK   40 (285)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGG
T ss_pred             CEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChh
Confidence            55789999999999999999999876445666666543

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=95.75  E-value=0.0056  Score=40.75  Aligned_cols=36  Identities=22%  Similarity=0.307  Sum_probs=32.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++|.|.||.|.+|+.+++.|.+.|+   .|++.+|....
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~---~V~~~d~~~~~   45 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGY---PISILDREDWA   45 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC---CEEEECTTCGG
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCC---CcEeccccccc
Confidence            6899999999999999999999998   69999997644

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=95.71  E-value=0.0072  Score=41.68  Aligned_cols=38  Identities=21%  Similarity=0.287  Sum_probs=29.8

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .|+|.|.|+||+||+..++-+.+. |+--+|.++.=...
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~-~d~f~v~~lsa~~N   39 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERN-LDRYQVIALTANRN   39 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHT-GGGEEEEEEEESSC
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcC-CCCcEEEEEEeCCC
Confidence            478999999999999999888775 44347777776543

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=95.68  E-value=0.008  Score=43.14  Aligned_cols=33  Identities=21%  Similarity=0.230  Sum_probs=28.5

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++||||++=||.+++++|++.|.   +|++..|..
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga---~V~i~~~~~   36 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGY---AVCLHYHRS   36 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC---EEEEEeCCC
Confidence            468999999999999999999997   688777653

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0085  Score=47.34  Aligned_cols=62  Identities=19%  Similarity=0.206  Sum_probs=42.9

Q ss_pred             ChhhhhCCCCCCC-CCCCCCCCCCcchhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          34 DPLQLLGEKNFGR-PRKIPKDEIGTPIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        34 ~~~dLl~r~~~~~-~~~~~~~~~~~~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ++..||.|..... +.-..   ....+...+++++|+|.|++| +|+++++.|+..|-  .++.+++.+
T Consensus         8 ~~~~~~~r~~~~~~~~~~~---~~e~~~~~l~~~kVlvvG~Gg-lG~ei~k~L~~~Gv--g~i~lvD~D   70 (426)
T d1yovb1           8 HVKKFLERSGPFTHPDFEP---STESLQFLLDTCKVLVIGAGG-LGCELLKNLALSGF--RQIHVIDMD   70 (426)
T ss_dssp             HHHHHHHSCCTTCCTTCCC---CSSHHHHHHHHCCEEEECSST-THHHHHHHHHTTTC--CCEEEECCC
T ss_pred             hHHHHHhcCCCCcCccccc---ChHHHHHHHhcCeEEEECCCH-HHHHHHHHHHHcCC--CeEEEEECC
Confidence            4566777754332 11111   223345568899999999988 89999999999876  478888754

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=95.46  E-value=0.014  Score=40.26  Aligned_cols=37  Identities=22%  Similarity=0.306  Sum_probs=29.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+|.|.|+||+||+..++-+.++ |+--+|.++.=...
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~-~d~f~v~~Lsa~~N   38 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHN-PEHFRVVALVAGKN   38 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHC-TTTEEEEEEEESSC
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhC-CCCcEEEEEEecCc
Confidence            57999999999999999988776 54347887775443

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.42  E-value=0.007  Score=43.68  Aligned_cols=36  Identities=22%  Similarity=0.319  Sum_probs=29.5

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCc----cEEEEEecCC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHL----KHIYLLVRPK  102 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~----~~V~~l~R~~  102 (121)
                      .|+||||++=||.+++++|++.|.++    ..|++..|+.
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~   42 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA   42 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCH
Confidence            47899999999999999999998741    1377788864

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.20  E-value=0.017  Score=39.21  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=31.0

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+|.|.||+|.+|+.++..|+.++- +.++.++++.++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l-~~el~L~D~~~~   37 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPF-MKDLVLIGREHS   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTT-CCEEEEEECGGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCc-ccccccccchhh
Confidence            5899999999999999998888753 458999998643

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.01  E-value=0.021  Score=38.63  Aligned_cols=37  Identities=24%  Similarity=0.252  Sum_probs=29.5

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+|.|+||+|.+|++++..|+...+...++.+++..+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            6899999999999999988766533345888888753

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.79  E-value=0.019  Score=39.07  Aligned_cols=38  Identities=13%  Similarity=0.118  Sum_probs=31.7

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++.+|+|+||+|-+|...+......|.   +|++.++++.+
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~---~vi~~~~~~~~   64 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGL---RVLAAASRPEK   64 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTC---EEEEEESSGGG
T ss_pred             CCCEEEEEeccccchhhhhhhhccccc---ccccccccccc
Confidence            578999999999999999887777765   78888887654

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.015  Score=39.34  Aligned_cols=36  Identities=19%  Similarity=0.097  Sum_probs=30.3

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++.+|+|+||+|-+|...+......|.   +|++.++++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~---~vi~~~~~~   63 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGL---KILGTAGTE   63 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCEEEEEeccccccccccccccccCc---ccccccccc
Confidence            577999999999999999987777765   788888764

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=94.66  E-value=0.028  Score=38.55  Aligned_cols=38  Identities=29%  Similarity=0.309  Sum_probs=31.7

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++.+|+|+||+|-+|...+......|.   +|++.+++..+
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga---~Viat~~s~~k   60 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGY---DVVASTGNREA   60 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTC---CEEEEESSSST
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCC---ceEEEecCHHH
Confidence            355799999999999999977666776   79999998765

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.63  E-value=0.013  Score=40.05  Aligned_cols=37  Identities=11%  Similarity=0.101  Sum_probs=31.6

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +|.+|+|+||+|-+|...+......|.   +|++.+|++.
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga---~vi~~~~~~~   65 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGC---KVVGAAGSDE   65 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSHH
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCC---EEEEeCCCHH
Confidence            578999999999999999987777765   8999998743

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.56  E-value=0.035  Score=37.36  Aligned_cols=39  Identities=28%  Similarity=0.330  Sum_probs=32.3

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+++|.|.|| |.+|+.++..|+..+. +.+++++++.+..
T Consensus         5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l-~~el~L~Di~~~~   43 (148)
T d1ldna1           5 GGARVVVIGA-GFVGASYVFALMNQGI-ADEIVLIDANESK   43 (148)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHHH
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhcCC-CceEEEEeecccc
Confidence            4578999997 9999999999999864 4689999986543

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=94.51  E-value=0.066  Score=36.62  Aligned_cols=39  Identities=15%  Similarity=0.126  Sum_probs=32.9

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++++|+|.|++| .|..++..|++.+.  ++|++..|+...
T Consensus        16 l~~k~vlIlGaGG-aarai~~al~~~g~--~~i~i~nR~~~~   54 (182)
T d1vi2a1          16 IKGKTMVLLGAGG-ASTAIGAQGAIEGL--KEIKLFNRRDEF   54 (182)
T ss_dssp             CTTCEEEEECCSH-HHHHHHHHHHHTTC--SEEEEEECSSTT
T ss_pred             cCCCEEEEECCcH-HHHHHHHHHhhcCC--ceEeeeccchHH
Confidence            5789999999965 57889999999876  499999998765

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=94.48  E-value=0.031  Score=38.08  Aligned_cols=40  Identities=25%  Similarity=0.383  Sum_probs=34.1

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+++++|+|.|+ |-+|..+++.|...+.  .++++..|+..+
T Consensus        21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~--~~i~v~nRt~~k   60 (159)
T d1gpja2          21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGV--RAVLVANRTYER   60 (159)
T ss_dssp             CCTTCEEEEESC-CHHHHHHHHHHHHHCC--SEEEEECSSHHH
T ss_pred             CcccCeEEEECC-CHHHHHHHHHHHhcCC--cEEEEEcCcHHH
Confidence            357899999998 9999999999999876  489999997543

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.38  E-value=0.019  Score=38.71  Aligned_cols=38  Identities=13%  Similarity=0.057  Sum_probs=32.1

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.+|+|+||+|-+|...+......|.   +|++.+++..+
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga---~Vi~~~~s~~k   65 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGA---KLIGTVGTAQK   65 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTC---EEEEEESSHHH
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCC---eEeecccchHH
Confidence            367999999999999999988888876   79999887543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.29  E-value=0.035  Score=37.02  Aligned_cols=33  Identities=24%  Similarity=0.252  Sum_probs=28.8

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+|.|.|+ |.+|+.+++.|.+.|+   +|++..|++
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~---~V~~~d~~~   33 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGH---YLIGVSRQQ   33 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC---EEEEEECCc
Confidence            57888866 9999999999999987   799998874

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.23  E-value=0.013  Score=39.66  Aligned_cols=25  Identities=28%  Similarity=0.355  Sum_probs=22.3

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAI   89 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~   89 (121)
                      .++|.|+||+|++|++++..|+...
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~   28 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGE   28 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcc
Confidence            4589999999999999999998864

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.034  Score=38.86  Aligned_cols=35  Identities=23%  Similarity=0.283  Sum_probs=31.2

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++|.|.|| |.+|+.|+..++..|+   +|++.++++..
T Consensus         5 kkvaViGa-G~mG~~iA~~~a~~G~---~V~l~D~~~~~   39 (192)
T d1f0ya2           5 KHVTVIGG-GLMGAGIAQVAAATGH---TVVLVDQTEDI   39 (192)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSCHHH
T ss_pred             EEEEEECc-CHHHHHHHHHHHhCCC---cEEEEECChHH
Confidence            68999999 9999999999999998   79999997643

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=93.97  E-value=0.051  Score=36.60  Aligned_cols=35  Identities=17%  Similarity=0.170  Sum_probs=29.6

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+|.|.||+|.+|+.++..++..+. +.+++++++.
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l-~~el~L~Di~   35 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDI-ADEVVFVDIP   35 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-CSEEEEECCG
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCC-CCEEEEEecC
Confidence            3799999999999999999998854 4688888864

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=93.93  E-value=0.064  Score=34.53  Aligned_cols=37  Identities=24%  Similarity=0.279  Sum_probs=30.3

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .||+|+|.|| |++|.+++..|.+.+++ .+|+++.+.+
T Consensus         1 ~gkrivIvGg-G~~G~e~A~~l~~~~~~-~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGG-GTGGATAAKYIKLADPS-IEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCTT-SEEEEECSCS
T ss_pred             CCCcEEEECc-cHHHHHHHHHHHHcCCC-CcEEEEECCC
Confidence            3788888865 89999999999999876 3788887754

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.92  E-value=0.05  Score=36.20  Aligned_cols=35  Identities=29%  Similarity=0.390  Sum_probs=29.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++|+|.| .|.+|+.+++.|.+.++. .+|++.+|++
T Consensus         2 k~I~IIG-~G~mG~sla~~L~~~g~~-~~I~~~D~~~   36 (171)
T d2g5ca2           2 QNVLIVG-VGFMGGSFAKSLRRSGFK-GKIYGYDINP   36 (171)
T ss_dssp             CEEEEES-CSHHHHHHHHHHHHTTCC-SEEEEECSCH
T ss_pred             CEEEEEc-cCHHHHHHHHHHHhcCCC-eEEEEEECCh
Confidence            4699997 599999999999998864 3788888864

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=93.85  E-value=0.051  Score=36.08  Aligned_cols=34  Identities=15%  Similarity=-0.007  Sum_probs=30.7

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +|+|.|.|| |.+|..++..|.+.|+   .|+++.|++
T Consensus         1 sk~iaIiGa-G~~G~~~A~~l~~~G~---~V~~~~r~~   34 (184)
T d1bg6a2           1 SKTYAVLGL-GNGGHAFAAYLALKGQ---SVLAWDIDA   34 (184)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            478999998 9999999999999987   799999974

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=93.84  E-value=0.058  Score=35.78  Aligned_cols=37  Identities=19%  Similarity=0.161  Sum_probs=31.0

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      |+|.|+|| |.+|+.++..|+..+. +.++.++++++..
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l-~~el~L~Di~~~~   37 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQL-ARELVLLDVVEGI   37 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSSSH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC-CceEEEecccccc
Confidence            58999997 9999999999888753 4689999988765

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.041  Score=38.06  Aligned_cols=37  Identities=22%  Similarity=0.267  Sum_probs=31.5

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +.+|+|+||+|-+|+..+......|.   +|++.+|++.+
T Consensus        32 ~~~vlV~gasGGVG~~aiQlAk~~Ga---~Via~~~~~~k   68 (177)
T d1o89a2          32 DGEIVVTGASGGVGSTAVALLHKLGY---QVVAVSGREST   68 (177)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHTTC---CEEEEESCGGG
T ss_pred             CCcEEEEEccccchHHHHHHHHHcCC---CeEEEecchhH
Confidence            35899999999999999987777776   68999998665

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=93.60  E-value=0.041  Score=37.33  Aligned_cols=38  Identities=13%  Similarity=0.118  Sum_probs=31.6

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++++|+|.||+| .++.++..|.+.+.   +|+++.|+..+
T Consensus        16 ~~~k~vlIlGaGG-aarai~~al~~~g~---~i~I~nRt~~k   53 (170)
T d1nyta1          16 RPGLRILLIGAGG-ASRGVLLPLLSLDC---AVTITNRTVSR   53 (170)
T ss_dssp             CTTCEEEEECCSH-HHHHHHHHHHHTTC---EEEEECSSHHH
T ss_pred             CCCCEEEEECCcH-HHHHHHHHhcccce---EEEeccchHHH
Confidence            4689999999976 59999999999865   69999998544

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.57  E-value=0.054  Score=36.44  Aligned_cols=36  Identities=25%  Similarity=0.217  Sum_probs=29.5

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+|.|.||+|.+|++++..|...+. +.++++++..+
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~-~~elvLiDi~~   36 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPL-VSRLTLYDIAH   36 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTT-CSEEEEEESSS
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCc-cceEEEEeccc
Confidence            3799999999999999988877643 46899988754

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=93.50  E-value=0.027  Score=39.23  Aligned_cols=39  Identities=21%  Similarity=0.264  Sum_probs=27.5

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhC---CC-ccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAI---PH-LKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~---~~-~~~V~~l~R~~  102 (121)
                      +..+|+||||+|.||++++..|++..   .+ ...++.+....
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~   65 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSER   65 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGG
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCcc
Confidence            44589999999999999999988742   11 12455555543

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.47  E-value=0.035  Score=39.52  Aligned_cols=38  Identities=26%  Similarity=0.281  Sum_probs=32.4

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +.+++++|+|.|++| +|++++..|++.|.  +++++++.+
T Consensus        26 ~kL~~~~VliiG~Gg-lGs~va~~La~~Gv--g~i~lvD~D   63 (247)
T d1jw9b_          26 EALKDSRVLIVGLGG-LGCAASQYLASAGV--GNLTLLDFD   63 (247)
T ss_dssp             HHHHHCEEEEECCSH-HHHHHHHHHHHHTC--SEEEEECCC
T ss_pred             HHHhCCCEEEECCCH-HHHHHHHHHHHcCC--CeEEEECCc
Confidence            457889999999766 89999999999986  589998754

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.42  E-value=0.11  Score=34.75  Aligned_cols=38  Identities=16%  Similarity=0.153  Sum_probs=30.3

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCc
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGK  105 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~  105 (121)
                      .+.+|+|.|+ |-+|...+..+...|.   +|+++.+++.+.
T Consensus        27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~---~vi~~~~~~~k~   64 (168)
T d1piwa2          27 PGKKVGIVGL-GGIGSMGTLISKAMGA---ETYVISRSSRKR   64 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTC---EEEEEESSSTTH
T ss_pred             CCCEEEEECC-CCcchhHHHHhhhccc---cccccccchhHH
Confidence            5789999987 8899988876666765   789999987653

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.37  E-value=0.058  Score=36.16  Aligned_cols=36  Identities=19%  Similarity=0.170  Sum_probs=30.3

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++.+|+|+||+|-+|...+..+...|.   ++++.+++.
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~---~vi~~~~~~   60 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGA---RIYTTAGSD   60 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTC---EEEEEESSH
T ss_pred             CCCEEEEECCCCCcccccchhhccccc---cceeeeccc
Confidence            468999999999999999988877876   788888753

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=93.27  E-value=0.067  Score=35.98  Aligned_cols=38  Identities=13%  Similarity=0.150  Sum_probs=31.9

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +.++|.|.|+ |.+|+.++..|+..+- +.+|+++++...
T Consensus         4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~-~~elvL~D~~~~   41 (146)
T d1ez4a1           4 NHQKVVLVGD-GAVGSSYAFAMAQQGI-AEEFVIVDVVKD   41 (146)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCC-CcEEEEeecccc
Confidence            5679999996 9999999999999863 358999998753

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.22  E-value=0.061  Score=35.83  Aligned_cols=38  Identities=16%  Similarity=0.156  Sum_probs=31.7

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+.+|+|.|++|-+|...+..+...+..  +|++..+++.
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~--~V~~~~~~~~   64 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGA--TIIGVDVREE   64 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCC--EEEEEESSHH
T ss_pred             CCCEEEEEeccccceeeeeecccccccc--cccccccchh
Confidence            4678999999999999999888888753  7888888743

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.22  E-value=0.043  Score=36.92  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=21.8

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAI   89 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~   89 (121)
                      .++|.|+||+|.+|++++..|+...
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~   27 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGS   27 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTT
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999988643

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=93.18  E-value=0.062  Score=32.98  Aligned_cols=38  Identities=16%  Similarity=0.142  Sum_probs=31.0

Q ss_pred             hhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          62 FFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        62 ~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .++||+|+|.|. |-.|..+++.|.++|.   +|++.+....
T Consensus         2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~---~v~~~D~~~~   39 (93)
T d2jfga1           2 DYQGKNVVIIGL-GLTGLSCVDFFLARGV---TPRVMDTRMT   39 (93)
T ss_dssp             CCTTCCEEEECC-SHHHHHHHHHHHHTTC---CCEEEESSSS
T ss_pred             CcCCCEEEEEeE-CHHHHHHHHHHHHCCC---EEEEeeCCcC
Confidence            368999999999 5569999999999987   5888887543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.14  E-value=0.053  Score=37.51  Aligned_cols=38  Identities=24%  Similarity=0.232  Sum_probs=31.9

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.+|+|+||+|-+|+..+.-....|.   +|++..++..+
T Consensus        31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga---~Viat~~s~~k   68 (176)
T d1xa0a2          31 ERGPVLVTGATGGVGSLAVSMLAKRGY---TVEASTGKAAE   68 (176)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHTTC---CEEEEESCTTC
T ss_pred             CCCEEEEEeccchHHHHHHHHHHHcCC---ceEEecCchHH
Confidence            367899999999999999977767766   68889887665

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=93.14  E-value=0.092  Score=35.44  Aligned_cols=38  Identities=18%  Similarity=0.098  Sum_probs=30.6

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +.++|.|.|| |.+|+.+...|...+.  .++++++.++..
T Consensus         6 k~~KI~IIGa-G~VG~~lA~~l~~~~~--~el~L~D~~~~~   43 (154)
T d1pzga1           6 RRKKVAMIGS-GMIGGTMGYLCALREL--ADVVLYDVVKGM   43 (154)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSSSSH
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCC--ceEEEEEecccc
Confidence            4579999998 9999999988777753  488888877654

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.00  E-value=0.043  Score=36.31  Aligned_cols=39  Identities=21%  Similarity=0.353  Sum_probs=32.4

Q ss_pred             chhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          58 PIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        58 ~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      ++.-.++||+|+|.|| |.+|..-++.|++.|.   +|+++..
T Consensus         6 pl~~~l~gkrvLViGg-G~va~~ka~~Ll~~GA---~VtVvap   44 (150)
T d1kyqa1           6 QLAHQLKDKRILLIGG-GEVGLTRLYKLMPTGC---KLTLVSP   44 (150)
T ss_dssp             EEEECCTTCEEEEEEE-SHHHHHHHHHHGGGTC---EEEEEEE
T ss_pred             hhheeeCCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEeC
Confidence            4444578999999999 8899999999999987   6777754

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=92.91  E-value=0.06  Score=36.51  Aligned_cols=38  Identities=26%  Similarity=0.370  Sum_probs=31.4

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++++|+|.|++| .|+.++..|.+.+.  .+|+++.|+..+
T Consensus        16 ~~~~vlIlGaGG-aarai~~aL~~~g~--~~I~I~nR~~~k   53 (167)
T d1npya1          16 KNAKVIVHGSGG-MAKAVVAAFKNSGF--EKLKIYARNVKT   53 (167)
T ss_dssp             TTSCEEEECSST-THHHHHHHHHHTTC--CCEEEECSCHHH
T ss_pred             CCCeEEEECCCH-HHHHHHHHHHHCCC--CEEEEecccHHH
Confidence            578999999966 68899999999876  489999998643

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=92.90  E-value=0.044  Score=35.18  Aligned_cols=33  Identities=21%  Similarity=0.199  Sum_probs=27.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+++|.|+ |-+|++++++|.+.|.   .|+++..++
T Consensus         1 k~~iIiG~-G~~G~~la~~L~~~g~---~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGL-GRFGGSIVKELHRMGH---EVLAVDINE   33 (134)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTC---CCEEEESCH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC---eEEEecCcH
Confidence            56788877 8999999999999987   578887763

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=92.82  E-value=0.064  Score=36.01  Aligned_cols=39  Identities=18%  Similarity=0.041  Sum_probs=31.3

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCc
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGK  105 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~  105 (121)
                      .|.+|+|.|++| +|...+.++...+..  +|++..+++.+.
T Consensus        28 ~GdtVlV~GaGG-~G~~~~~~~~~~g~~--~Vi~~~~~~~k~   66 (176)
T d2jhfa2          28 QGSTCAVFGLGG-VGLSVIMGCKAAGAA--RIIGVDINKDKF   66 (176)
T ss_dssp             TTCEEEEECCSH-HHHHHHHHHHHTTCS--EEEEECSCGGGH
T ss_pred             CCCEEEEECCCC-cHHHHHHHHHHcCCc--eEEeecCcHHHH
Confidence            467999999966 788888888888763  899999987653

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=92.80  E-value=0.075  Score=35.14  Aligned_cols=35  Identities=26%  Similarity=0.415  Sum_probs=29.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+|.+.|+ |-+|+++++.|++.++.  +|++..|++.
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~~--~i~v~~r~~~   35 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGGY--RIYIANRGAE   35 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSC--EEEEECSSHH
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCCC--cEEEEeCChh
Confidence            57888866 99999999999999853  8999999753

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.79  E-value=0.052  Score=36.77  Aligned_cols=38  Identities=13%  Similarity=0.173  Sum_probs=30.4

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .|.+|+|+|| |-+|...+..+...|.  .+|++..+++.+
T Consensus        28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga--~~Vi~~~~~~~~   65 (182)
T d1vj0a2          28 AGKTVVIQGA-GPLGLFGVVIARSLGA--ENVIVIAGSPNR   65 (182)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTB--SEEEEEESCHHH
T ss_pred             CCCEEEEECC-Cccchhheeccccccc--cccccccccccc
Confidence            5789999997 8899988888777765  389999886543

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=92.68  E-value=0.04  Score=38.17  Aligned_cols=35  Identities=20%  Similarity=0.182  Sum_probs=30.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++|.|.|| |.+|+.|+..++..|.   +|++.+++...
T Consensus         5 ~~vaViGa-G~mG~~iA~~~a~~G~---~V~l~D~~~~~   39 (186)
T d1wdka3           5 KQAAVLGA-GIMGGGIAYQSASKGT---PILMKDINEHG   39 (186)
T ss_dssp             SSEEEECC-HHHHHHHHHHHHHTTC---CEEEECSSHHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC---eEEEEECCHHH
Confidence            57999998 9999999999999987   69999997543

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.42  E-value=0.16  Score=33.32  Aligned_cols=39  Identities=23%  Similarity=0.343  Sum_probs=29.0

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+++||.|+|.|+ |--+-..+..|.+...   +|+.+.|...
T Consensus        30 ~~frgk~V~VvGg-GdsA~e~A~~L~~~a~---~V~li~r~~~   68 (130)
T d1vdca2          30 PIFRNKPLAVIGG-GDSAMEEANFLTKYGS---KVYIIHRRDA   68 (130)
T ss_dssp             GGGTTSEEEEECC-SHHHHHHHHHHTTTSS---EEEEECSSSS
T ss_pred             HHhCCCEEEEEcC-chHHHHHHHHHhCCCC---cEEEEEeccc
Confidence            4899999999999 5555555666666543   8999999643

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=92.22  E-value=0.14  Score=34.00  Aligned_cols=38  Identities=18%  Similarity=0.232  Sum_probs=29.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCc
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGK  105 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~  105 (121)
                      ++|.|.|| |.+|+.++..++..+. +.+++++++.....
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l-~~el~L~D~~~~~~   39 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQT-ANELVLIDVFKEKA   39 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTC-SSEEEEECCC---C
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeccCCcc
Confidence            47888897 9999999999988753 46899999876553

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.21  E-value=0.3  Score=31.00  Aligned_cols=33  Identities=21%  Similarity=0.182  Sum_probs=27.5

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++++|.| +|+||.+++..|.+.|.   +|.++.|..
T Consensus        23 ~~i~IiG-~G~ig~E~A~~l~~~G~---~Vtiv~~~~   55 (119)
T d3lada2          23 GKLGVIG-AGVIGLELGSVWARLGA---EVTVLEAMD   55 (119)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHHHTTC---EEEEEESSS
T ss_pred             CeEEEEC-CChHHHHHHHHHHHcCC---ceEEEEeec
Confidence            6677765 59999999999999987   788888753

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=92.14  E-value=0.066  Score=36.55  Aligned_cols=38  Identities=26%  Similarity=0.277  Sum_probs=30.4

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++++|+|.|++|- +..++..|.+. .  .+|+++.|+.++
T Consensus        16 ~~~k~vlIlGaGGa-arai~~aL~~~-~--~~i~I~nR~~~~   53 (171)
T d1p77a1          16 RPNQHVLILGAGGA-TKGVLLPLLQA-Q--QNIVLANRTFSK   53 (171)
T ss_dssp             CTTCEEEEECCSHH-HHTTHHHHHHT-T--CEEEEEESSHHH
T ss_pred             CCCCEEEEECCcHH-HHHHHHHHccc-C--ceeeeccchHHH
Confidence            57899999998776 78888888874 3  389999998543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.00  E-value=0.17  Score=31.80  Aligned_cols=33  Identities=21%  Similarity=0.259  Sum_probs=27.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++++|.| +|++|.+++..+.+.|.   +|.++.|..
T Consensus        23 ~~v~IiG-gG~ig~E~A~~l~~~G~---~Vtlve~~~   55 (117)
T d1ebda2          23 KSLVVIG-GGYIGIELGTAYANFGT---KVTILEGAG   55 (117)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHHHTTC---EEEEEESSS
T ss_pred             CeEEEEC-CCccceeeeeeeccccc---EEEEEEecc
Confidence            5677765 59999999999999987   788888854

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.72  E-value=0.14  Score=34.95  Aligned_cols=39  Identities=15%  Similarity=0.119  Sum_probs=31.7

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++..+|.|.|+ |.+|++++..|+..+. +.++++++++..
T Consensus        17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l-~~elvL~D~~~~   55 (159)
T d2ldxa1          17 LSRCKITVVGV-GDVGMACAISILLKGL-ADELALVDADTD   55 (159)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHTTTS-CSEEEEECSCHH
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCch
Confidence            45568999996 9999999999998864 468999988653

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=91.71  E-value=0.13  Score=34.56  Aligned_cols=37  Identities=11%  Similarity=0.106  Sum_probs=30.3

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      |+|.|.|+ |.+|+.++..|+..+- +.+++++++++..
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~-~~elvL~Di~~~~   38 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGV-ADDYVFIDANEAK   38 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHHH
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCC-CceEEEEecccch
Confidence            78999995 9999999999998863 3589988886543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=91.70  E-value=0.15  Score=32.62  Aligned_cols=33  Identities=18%  Similarity=0.382  Sum_probs=27.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++|+|.| +|++|.+++..|.+.|.   +|+++.|..
T Consensus        23 ~~v~IiG-gG~iG~E~A~~l~~~g~---~Vtlv~~~~   55 (117)
T d1onfa2          23 KKIGIVG-SGYIAVELINVIKRLGI---DSYIFARGN   55 (117)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHHTTTC---EEEEECSSS
T ss_pred             CEEEEEC-CchHHHHHHHHHHhccc---cceeeehhc
Confidence            5677765 59999999999999876   799999853

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.68  E-value=0.15  Score=33.99  Aligned_cols=37  Identities=16%  Similarity=0.131  Sum_probs=30.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      |+|.|.|+ |.+|++++..++..+ -+.+++++++++..
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~-~~~elvL~Di~~~~   37 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNL-DVDEIALVDIAEDL   37 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHS-CCSEEEEECSSHHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcC-cCceEEEEecccch
Confidence            68999997 999999999888875 45689999886543

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.41  E-value=0.26  Score=31.07  Aligned_cols=36  Identities=22%  Similarity=0.320  Sum_probs=28.3

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++++|.|| |++|.+++..+.+.+..-.+|+++.|..
T Consensus        21 ~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          21 RRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             SEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            67888887 9999999988887765434788888853

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.12  E-value=0.16  Score=37.61  Aligned_cols=35  Identities=17%  Similarity=0.198  Sum_probs=28.9

Q ss_pred             CCeEEEEcCC--ChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGT--GFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGat--GfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +|..+||||.  .-||..++++|++.|.   +|++..|..
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA---~V~i~~~~~   38 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNV---KIIFGIWPP   38 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTC---EEEEEECGG
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCC---EEEEEeCch
Confidence            6789999954  5799999999999997   687776643

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=91.05  E-value=0.17  Score=34.58  Aligned_cols=43  Identities=14%  Similarity=0.119  Sum_probs=34.5

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ....+.++|.|.|+ |.+|+.++..|+..+. +.++.+++++++.
T Consensus        15 ~~~~~~~KV~IIGa-G~VG~~~A~~l~~~~l-~~ElvLiD~~~~~   57 (160)
T d1i0za1          15 EATVPNNKITVVGV-GQVGMACAISILGKSL-ADELALVDVLEDK   57 (160)
T ss_dssp             CCCCCSSEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSCHHH
T ss_pred             cccCCCCeEEEECC-CHHHHHHHHHHHhcCC-CcEEEEEEeccch
Confidence            34556789999996 9999999999999864 4689999886543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.02  E-value=0.22  Score=31.89  Aligned_cols=33  Identities=12%  Similarity=0.140  Sum_probs=27.3

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++++|.| +|++|.+++..|.+.|.   +|.++.|..
T Consensus        24 ~~~vIiG-~G~ig~E~A~~l~~lG~---~Vtii~~~~   56 (122)
T d1v59a2          24 KRLTIIG-GGIIGLEMGSVYSRLGS---KVTVVEFQP   56 (122)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHHHTTC---EEEEECSSS
T ss_pred             CeEEEEC-CCchHHHHHHHHHhhCc---ceeEEEecc
Confidence            5677765 59999999999999987   798888743

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.75  E-value=0.24  Score=31.72  Aligned_cols=33  Identities=15%  Similarity=0.284  Sum_probs=27.8

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++++|.|| |++|.+++..|.+.|.   +|+++.|..
T Consensus        23 k~vvIvGg-G~iG~E~A~~l~~~G~---~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGA-GYIAVEMAGILSALGS---KTSLMIRHD   55 (125)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSSS
T ss_pred             CEEEEEcC-CccHHHHHHHHhcCCc---EEEEEeecc
Confidence            57777764 7999999999999987   799999863

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=90.66  E-value=0.24  Score=32.76  Aligned_cols=36  Identities=22%  Similarity=0.218  Sum_probs=29.5

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++|.|.|+ |.+|+.++..|+..+-  ..+.+++..+..
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l--~dl~l~D~~~~~   37 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKEL--GDIVLLDIVEGV   37 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTC--SEEEEECSSSSH
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCc--ceEEEEeecccc
Confidence            68999997 9999999999888743  478888887654

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=90.40  E-value=0.44  Score=32.18  Aligned_cols=38  Identities=18%  Similarity=0.183  Sum_probs=29.7

Q ss_pred             cCCeEEE-EcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFV-TGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlV-TGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .|.+++| +||+|-+|...+.-....|.   +|++.+|....
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga---~vI~~v~~~~~   66 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNF---NSISVIRDRPN   66 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTC---EEEEEECCCTT
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCC---eEEEEEecccc
Confidence            3566666 69999999999887777776   78888887654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=90.37  E-value=0.27  Score=30.97  Aligned_cols=33  Identities=21%  Similarity=0.168  Sum_probs=27.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++|+|. |+|++|.+++..|.+.|.   +|.++.|..
T Consensus        22 ~~vvIi-GgG~ig~E~A~~l~~~G~---~Vtlve~~~   54 (116)
T d1gesa2          22 ERVAVV-GAGYIGVELGGVINGLGA---KTHLFEMFD   54 (116)
T ss_dssp             SEEEEE-CCSHHHHHHHHHHHHTTC---EEEEECSSS
T ss_pred             CEEEEE-CCChhhHHHHHHhhcccc---EEEEEeecc
Confidence            566665 569999999999999987   788888854

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=90.36  E-value=0.38  Score=30.98  Aligned_cols=40  Identities=25%  Similarity=0.275  Sum_probs=31.5

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ..++++++|+|.|+ |-.+-+.+..|.+.+.   +|+++.|...
T Consensus        22 ~~~~~~k~V~VvGg-GdsA~e~A~~L~~~a~---~V~li~r~~~   61 (126)
T d1trba2          22 GFFYRNQKVAVIGG-GNTAVEEALYLSNIAS---EVHLIHRRDG   61 (126)
T ss_dssp             GGGGTTSEEEEECS-SHHHHHHHHHHTTTSS---EEEEECSSSS
T ss_pred             hHHhCCCEEEEECC-CHHHHHHHHHHhhcCC---cEEEEeeccc
Confidence            35789999999998 6667777777777643   8999999654

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=90.35  E-value=0.22  Score=33.23  Aligned_cols=37  Identities=22%  Similarity=0.161  Sum_probs=30.5

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+|.|.|+ |.+|++++..++..+- +.++.++++.+..
T Consensus         2 ~Ki~IIGa-G~VG~~~a~~l~~~~l-~~ElvL~D~~~~~   38 (143)
T d1llda1           2 TKLAVIGA-GAVGSTLAFAAAQRGI-AREIVLEDIAKER   38 (143)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCC-CcEEEEEEecccc
Confidence            47899997 9999999999998854 4689999887543

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.35  E-value=0.21  Score=32.99  Aligned_cols=37  Identities=22%  Similarity=0.133  Sum_probs=30.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ++|.|.|| |.+|+.++..++..+- +.++.++++++..
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l-~~el~L~Di~~~~   37 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGF-AREMVLIDVDKKR   37 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC-CCEEEEEeccccc
Confidence            58999997 9999999998888853 4689999887543

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=90.34  E-value=0.39  Score=32.39  Aligned_cols=37  Identities=24%  Similarity=0.271  Sum_probs=26.3

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEE-ecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLL-VRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l-~R~~~~  104 (121)
                      .+|.|.| +|.+|..++.++++..|.. +++++ .|+...
T Consensus         5 irvaIIG-aG~ig~~~~~~~l~~~~~~-el~avas~~~~~   42 (157)
T d1nvmb1           5 LKVAIIG-SGNIGTDLMIKVLRNAKYL-EMGAMVGIDAAS   42 (157)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHHCSSE-EEEEEECSCTTC
T ss_pred             cEEEEEc-CcHHHHHHHHHHHhhCCcc-eEEEEEecchhc
Confidence            5799999 8999998776677766654 55555 566543

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=90.30  E-value=0.46  Score=30.58  Aligned_cols=40  Identities=28%  Similarity=0.355  Sum_probs=29.4

Q ss_pred             hhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          60 QEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        60 ~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ..+++||+|+|.|+ |--+-..+..|.+...   +|+++.|...
T Consensus        25 ~~~~~gk~V~VvGg-G~sA~~~A~~L~~~a~---~V~li~r~~~   64 (126)
T d1fl2a2          25 GPLFKGKRVAVIGG-GNSGVEAAIDLAGIVE---HVTLLEFAPE   64 (126)
T ss_dssp             GGGGBTCEEEEECC-SHHHHHHHHHHHTTBS---EEEEECSSSS
T ss_pred             hhhcCCceEEEEeC-CHHHHHHHHhhhccCC---ceEEEecccc
Confidence            46799999999997 5555555557776543   8999998643

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.26  E-value=0.16  Score=33.84  Aligned_cols=38  Identities=13%  Similarity=0.096  Sum_probs=29.9

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.+|+|.|+ |-+|...+..+...|.  .+|++..+++.+
T Consensus        26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~--~~Vi~~d~~~~r   63 (171)
T d1pl8a2          26 LGHKVLVCGA-GPIGMVTLLVAKAMGA--AQVVVTDLSATR   63 (171)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--SEEEEEESCHHH
T ss_pred             CCCEEEEECC-CccHHHHHHHHHHcCC--ceEEeccCCHHH
Confidence            4678999987 9999998887777776  389998886433

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.13  E-value=0.1  Score=35.34  Aligned_cols=37  Identities=16%  Similarity=0.353  Sum_probs=29.0

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      +++++|+|.|++| .++.++.+|.+.    .+|+++.|+..+
T Consensus        16 ~~~k~vlIlGaGG-~arai~~aL~~~----~~i~I~nR~~~k   52 (177)
T d1nvta1          16 VKDKNIVIYGAGG-AARAVAFELAKD----NNIIIANRTVEK   52 (177)
T ss_dssp             CCSCEEEEECCSH-HHHHHHHHHTSS----SEEEEECSSHHH
T ss_pred             cCCCEEEEECCcH-HHHHHHHHHccc----cceeeehhhhhH
Confidence            5889999999877 577788887543    389999998544

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=89.77  E-value=0.28  Score=34.96  Aligned_cols=36  Identities=19%  Similarity=0.330  Sum_probs=28.6

Q ss_pred             hhcCCeEEEEcC----------------CChHHHHHHHHHHHhCCCccEEEEEec
Q psy3445          62 FFRDASVFVTGG----------------TGFMGKILVEKLLRAIPHLKHIYLLVR  100 (121)
Q Consensus        62 ~~~~~~VlVTGa----------------tGfIGs~ll~~Ll~~~~~~~~V~~l~R  100 (121)
                      -++|++|+||+|                +|-.|.+|++++.++|.   .|+++.-
T Consensus         3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga---~V~li~g   54 (223)
T d1u7za_           3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGA---NVTLVSG   54 (223)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTC---EEEEEEC
T ss_pred             ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCC---chhhhhc
Confidence            357888888855                68899999999999998   4555543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.74  E-value=0.33  Score=32.81  Aligned_cols=39  Identities=18%  Similarity=0.027  Sum_probs=32.2

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCc
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGK  105 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~  105 (121)
                      .+.+|+|+|+ |-+|...+..+...+.  .+|++++++..+.
T Consensus        29 ~g~tVlI~G~-GgvGl~ai~~ak~~G~--~~Vi~vd~~~~kl   67 (176)
T d1d1ta2          29 PGSTCVVFGL-GGVGLSVIMGCKSAGA--SRIIGIDLNKDKF   67 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--SEEEEECSCGGGH
T ss_pred             CCCEEEEECC-CchhHHHHHHHHHcCC--ceEEEecCcHHHH
Confidence            4779999986 8899999998888875  4899999987653

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=89.36  E-value=0.29  Score=32.95  Aligned_cols=38  Identities=18%  Similarity=-0.003  Sum_probs=32.0

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.+|+|.|+ |-+|...+..+...+..  +|++.+++..+
T Consensus        27 ~G~~VlV~Ga-GgvGl~a~~~ak~~G~~--~Vi~~d~~~~k   64 (174)
T d1p0fa2          27 PGSTCAVFGL-GGVGFSAIVGCKAAGAS--RIIGVGTHKDK   64 (174)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCS--EEEEECSCGGG
T ss_pred             CCCEEEEECC-CchhHHHHHHHHHcCCc--eeeccCChHHH
Confidence            5789999986 88999999988888763  89999997655

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.29  E-value=0.2  Score=32.97  Aligned_cols=36  Identities=17%  Similarity=0.103  Sum_probs=27.8

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+.+|+|.|+ |-+|...+..+...|.   +|++..+++.
T Consensus        27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~---~Vi~~~~~~~   62 (166)
T d1llua2          27 PGQWVAISGI-GGLGHVAVQYARAMGL---HVAAIDIDDA   62 (166)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCEEEEeec-cccHHHHHHHHHHcCC---ccceecchhh
Confidence            4789999886 8899887776666654   7999988743

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=89.28  E-value=0.46  Score=30.19  Aligned_cols=35  Identities=20%  Similarity=0.294  Sum_probs=28.4

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.++|+|. |+||+|.+++..|.+.|.   +|+++.|..
T Consensus        29 ~~k~vvVi-GgG~iG~E~A~~l~~~g~---~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVI-GSGYIGIEAAEAFAKAGK---KVTVIDILD   63 (123)
T ss_dssp             TCCEEEEE-CCSHHHHHHHHHHHHTTC---EEEEEESSS
T ss_pred             CCCEEEEE-CChHHHHHHHHHhhccce---EEEEEEecC
Confidence            35677776 568999999999999986   788887753

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=89.27  E-value=0.4  Score=31.65  Aligned_cols=37  Identities=16%  Similarity=0.132  Sum_probs=27.7

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .|.+|+|.|+ |-+|...+..+...|.   +++++.++..+
T Consensus        30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga---~~i~~~~~~~~   66 (168)
T d1uufa2          30 PGKKVGVVGI-GGLGHMGIKLAHAMGA---HVVAFTTSEAK   66 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESSGGG
T ss_pred             CCCEEEEecc-chHHHHHHHHhhcccc---cchhhccchhH
Confidence            4789999987 7799988866666665   56678876544

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.11  E-value=0.27  Score=32.88  Aligned_cols=36  Identities=14%  Similarity=-0.011  Sum_probs=28.5

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+|+|.|+ |-+|...+..+...+..  +|++..+++
T Consensus        28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~--~v~~~~~~~   63 (174)
T d1f8fa2          28 PASSFVTWGA-GAVGLSALLAAKVCGAS--IIIAVDIVE   63 (174)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHHTCS--EEEEEESCH
T ss_pred             CCCEEEEeCC-CHHHhhhhhcccccccc--eeeeeccHH
Confidence            4678999987 89999999877777763  677777654

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.00  E-value=0.38  Score=31.91  Aligned_cols=34  Identities=26%  Similarity=0.202  Sum_probs=26.6

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +|.|.|++|-.|+.+++.+.+. +++.-+..+.+.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~-~~~~l~~~~d~~   34 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAA-DDLTLSAELDAG   34 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHS-TTSEEEEEECTT
T ss_pred             CEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecC
Confidence            6899999999999999988876 444455566554

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=88.74  E-value=0.44  Score=31.82  Aligned_cols=35  Identities=29%  Similarity=0.313  Sum_probs=28.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+|+|.|| |++|.+++..|.+.+++ .+|+.+.|..
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~-~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPD-AEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTT-SEEEEEESSS
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCC-CeEEEEeCCC
Confidence            57888776 59999999999998775 4788887753

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=88.65  E-value=0.24  Score=32.65  Aligned_cols=36  Identities=19%  Similarity=0.210  Sum_probs=27.9

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+.+|+|+| +|-+|...+..+...|.   +|+++.+++.
T Consensus        26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga---~vi~v~~~~~   61 (170)
T d1e3ja2          26 LGTTVLVIG-AGPIGLVSVLAAKAYGA---FVVCTARSPR   61 (170)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred             CCCEEEEEc-ccccchhhHhhHhhhcc---cccccchHHH
Confidence            467999997 68899998876666654   7999988744

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.51  E-value=0.39  Score=31.36  Aligned_cols=25  Identities=16%  Similarity=0.115  Sum_probs=21.9

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIP   90 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~   90 (121)
                      |+|.|.|++|-.|+.+.+.+...+.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~   25 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGH   25 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCC
Confidence            5799999999999999988877755

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=88.29  E-value=0.5  Score=31.02  Aligned_cols=38  Identities=18%  Similarity=0.030  Sum_probs=29.7

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.+|+|.|++| +|...+..+...+..  +|++..+++.+
T Consensus        28 ~G~tVlI~GaGG-vG~~aiq~ak~~G~~--~vi~~~~~~~k   65 (176)
T d2fzwa2          28 PGSVCAVFGLGG-VGLAVIMGCKVAGAS--RIIGVDINKDK   65 (176)
T ss_dssp             TTCEEEEECCSH-HHHHHHHHHHHHTCS--EEEEECSCGGG
T ss_pred             CCCEEEEecchh-HHHHHHHHHHHHhcC--ceEEEcccHHH
Confidence            467999999865 788888888888763  78888887655

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=88.28  E-value=0.3  Score=32.28  Aligned_cols=38  Identities=16%  Similarity=-0.004  Sum_probs=28.5

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.+|+|.|++| +|...+.++...+..  +|++..+++.+
T Consensus        28 ~g~~VlI~G~Gg-~g~~~~~~~~~~g~~--~Vi~~~~~~~r   65 (175)
T d1cdoa2          28 PGSTCAVFGLGA-VGLAAVMGCHSAGAK--RIIAVDLNPDK   65 (175)
T ss_dssp             TTCEEEEECCSH-HHHHHHHHHHHTTCS--EEEEECSCGGG
T ss_pred             CCCEEEEEecCC-ccchHHHHHHHHhhc--hheeecchHHH
Confidence            467899999866 666666667776653  89999987655

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=88.28  E-value=0.47  Score=30.52  Aligned_cols=33  Identities=9%  Similarity=0.134  Sum_probs=27.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++++|.| +|+||.+++..+.+.|.   +|+++.|..
T Consensus        27 ~~vvIiG-gG~IG~E~A~~~~~~G~---~Vtive~~~   59 (125)
T d1ojta2          27 GKLLIIG-GGIIGLEMGTVYSTLGS---RLDVVEMMD   59 (125)
T ss_dssp             SEEEEES-CSHHHHHHHHHHHHHTC---EEEEECSSS
T ss_pred             CeEEEEC-CCHHHHHHHHHhhcCCC---EEEEEEeec
Confidence            5666665 69999999999999987   788888753

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=88.10  E-value=0.26  Score=32.92  Aligned_cols=32  Identities=28%  Similarity=0.336  Sum_probs=27.5

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      |+|+|.|| |..|...+..|.+.|+   +|.++-+.
T Consensus         1 m~V~IIGa-G~aGL~aA~~L~~~G~---~V~vlE~~   32 (347)
T d2ivda1           1 MNVAVVGG-GISGLAVAHHLRSRGT---DAVLLESS   32 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHTTTC---CEEEECSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCC---CEEEEecC
Confidence            57899988 9999999999999987   58888764

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=88.02  E-value=0.15  Score=34.78  Aligned_cols=36  Identities=25%  Similarity=0.320  Sum_probs=28.0

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ..+|+|.|++|-.|+.+++.+.+. +++.-+.++.|.
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~-~~~~lv~~~~~~   39 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALAL-EGVQLGAALERE   39 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHS-TTEECCCEECCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecc
Confidence            358999999999999999999887 444445556554

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=87.64  E-value=0.53  Score=31.44  Aligned_cols=34  Identities=26%  Similarity=0.265  Sum_probs=28.2

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .++|+|.|| |..|...+..|.+.|+   +|.++.|..
T Consensus         6 ~~kVvVIGa-GiaGl~~A~~L~~~G~---~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGS-GVIGLSSALILARKGY---SVHILARDL   39 (268)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCcEEEECc-cHHHHHHHHHHHHCCC---CEEEEeCCC
Confidence            357888765 8999999999999988   799998853

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.60  E-value=0.24  Score=33.60  Aligned_cols=35  Identities=11%  Similarity=0.082  Sum_probs=27.0

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +.+|+|+||+|-+|+..+......|..  +|+..+++
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~--~vi~~~~~   65 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCS--RVVGICGT   65 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCS--EEEEEESS
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCc--ceecccch
Confidence            368999999999999999776666653  56666654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=87.51  E-value=0.24  Score=33.50  Aligned_cols=38  Identities=18%  Similarity=0.015  Sum_probs=29.3

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      .+.+|+|.|+ |-+|...+..+...|+  .+|++..+++.+
T Consensus        27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga--~~Vi~~d~~~~r   64 (174)
T d1jqba2          27 MGSSVVVIGI-GAVGLMGIAGAKLRGA--GRIIGVGSRPIC   64 (174)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTC--SCEEEECCCHHH
T ss_pred             CCCEEEEEcC-Ccchhhhhhhhhcccc--cccccccchhhh
Confidence            5778999986 8899888877777765  379988886543

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.43  E-value=0.6  Score=31.20  Aligned_cols=37  Identities=19%  Similarity=0.385  Sum_probs=29.2

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      ..||.|.|+ |.+|+.+...++..+  +.++.++++.+..
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~--l~el~L~Di~~~~   39 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKN--LGDVVLFDIVKNM   39 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTT--CCEEEEECSSSSH
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCC--CCeEEEEeccCCc
Confidence            358999996 999999997666654  4689999987654

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.21  E-value=0.43  Score=32.70  Aligned_cols=32  Identities=13%  Similarity=0.148  Sum_probs=28.2

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      |+|.|. |.||+|..++..|++.|+   +|++++.+
T Consensus         1 MkI~Vi-GlG~vGl~~a~~la~~g~---~V~g~D~n   32 (202)
T d1mv8a2           1 MRISIF-GLGYVGAVCAGCLSARGH---EVIGVDVS   32 (202)
T ss_dssp             CEEEEE-CCSTTHHHHHHHHHHTTC---EEEEECSC
T ss_pred             CEEEEE-CCCHhHHHHHHHHHhCCC---cEEEEeCC
Confidence            578888 789999999999999988   79998875

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.14  E-value=0.41  Score=29.90  Aligned_cols=41  Identities=24%  Similarity=0.277  Sum_probs=32.1

Q ss_pred             chhhhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          58 PIQEFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        58 ~i~~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+.=.+++++|+|.|+ |-+|..-++.|++.+.   +|+++....
T Consensus         5 Pi~l~l~~k~vlVvG~-G~va~~ka~~ll~~ga---~v~v~~~~~   45 (113)
T d1pjqa1           5 PIFCQLRDRDCLIVGG-GDVAERKARLLLEAGA---RLTVNALTF   45 (113)
T ss_dssp             EEEECCBTCEEEEECC-SHHHHHHHHHHHHTTB---EEEEEESSC
T ss_pred             ceEEEeCCCEEEEECC-CHHHHHHHHHHHHCCC---eEEEEeccC
Confidence            4444578999999986 5599999999999986   677776654

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.92  E-value=0.42  Score=31.14  Aligned_cols=40  Identities=18%  Similarity=0.256  Sum_probs=32.2

Q ss_pred             hhhcCCeEEEEcCC---ChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          61 EFFRDASVFVTGGT---GFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        61 ~~~~~~~VlVTGat---GfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+|..++|+|.||+   |..|..+++.|.+.+.  .+|+.+....
T Consensus         4 ~lf~PksIAVVGaS~~~~~~g~~v~~~L~~~~~--g~v~pVnP~~   46 (129)
T d2csua1           4 YFFNPKGIAVIGASNDPKKLGYEVFKNLKEYKK--GKVYPVNIKE   46 (129)
T ss_dssp             TTTSCSEEEEETCCSCTTSHHHHHHHHHTTCCS--SEEEEECSSC
T ss_pred             HhCCCCeEEEEccCCCCCCcHHHHHHHHHHcCC--CcEEEeccCc
Confidence            47888999999998   8999999999876543  3788887643

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.85  E-value=0.28  Score=31.99  Aligned_cols=36  Identities=14%  Similarity=0.038  Sum_probs=27.2

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .+.+|+|.|+ |-+|...+..+...+.   +|++..+++.
T Consensus        27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~---~v~~~~~~~~   62 (168)
T d1rjwa2          27 PGEWVAIYGI-GGLGHVAVQYAKAMGL---NVVAVDIGDE   62 (168)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTC---EEEEECSCHH
T ss_pred             CCCEEEEeec-ccchhhhhHHHhcCCC---eEeccCCCHH
Confidence            5778999876 7799887776666655   7888887643

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=86.71  E-value=0.45  Score=30.35  Aligned_cols=34  Identities=21%  Similarity=0.315  Sum_probs=27.8

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++++|. |+||+|.+++..|.+.+.   +|..+.|.+
T Consensus        30 ~~~vvII-GgG~iG~E~A~~l~~~g~---~Vtli~~~~   63 (121)
T d1d7ya2          30 QSRLLIV-GGGVIGLELAATARTAGV---HVSLVETQP   63 (121)
T ss_dssp             TCEEEEE-CCSHHHHHHHHHHHHTTC---EEEEEESSS
T ss_pred             CCeEEEE-CcchhHHHHHHHhhcccc---eEEEEeecc
Confidence            4666664 569999999999999976   799998864

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=86.56  E-value=0.55  Score=31.65  Aligned_cols=39  Identities=15%  Similarity=-0.014  Sum_probs=31.6

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCCc
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKGK  105 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~~  105 (121)
                      .|.+|+|.|+ |-+|...+..+...+..  +|++..+++.+.
T Consensus        28 ~G~~VlV~G~-G~iGl~a~~~ak~~Ga~--~Vi~~d~~~~r~   66 (174)
T d1e3ia2          28 PGSTCAVFGL-GCVGLSAIIGCKIAGAS--RIIAIDINGEKF   66 (174)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCS--EEEEECSCGGGH
T ss_pred             CCCEEEEECC-ChHHHHHHHHHHHhCCc--eeeeeccchHHH
Confidence            5679999975 99999999888888763  899988876553

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=86.32  E-value=0.64  Score=30.08  Aligned_cols=34  Identities=26%  Similarity=0.261  Sum_probs=27.8

Q ss_pred             CeEEEE-cCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVT-GGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVT-GatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +.++|. .++||+|.+++..|.+.|.   +|.++.|..
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~---~Vtlv~~~~   74 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGH---EVTIVSGVH   74 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCC---eEEEEecCC
Confidence            455554 5779999999999999997   799998864

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.13  E-value=0.56  Score=30.87  Aligned_cols=34  Identities=29%  Similarity=0.330  Sum_probs=28.5

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+|.+.| .|.+|+.+++.|++.|+   +|++..|++.
T Consensus         1 MkIgiIG-lG~MG~~~A~~L~~~G~---~V~~~d~~~~   34 (161)
T d1vpda2           1 MKVGFIG-LGIMGKPMSKNLLKAGY---SLVVSDRNPE   34 (161)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTC---EEEEECSCHH
T ss_pred             CEEEEEe-hhHHHHHHHHHHHHCCC---eEEEEeCCcc
Confidence            5677775 49999999999999988   7999988754

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=85.94  E-value=0.64  Score=30.69  Aligned_cols=33  Identities=21%  Similarity=0.140  Sum_probs=27.0

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +|+|+|.| +|..|-..+.+|.+.|.   +|.++-+.
T Consensus         1 ~KkV~IIG-aG~aGL~aA~~La~~G~---~V~vlE~~   33 (373)
T d1seza1           1 AKRVAVIG-AGVSGLAAAYKLKIHGL---NVTVFEAE   33 (373)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHTTSC---EEEEECSS
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHhCCC---CEEEEeCC
Confidence            57888886 57889899999999887   78888764

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=85.81  E-value=0.64  Score=30.21  Aligned_cols=35  Identities=14%  Similarity=0.087  Sum_probs=28.0

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKKG  104 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~~  104 (121)
                      |+|.|. |.|.+|+.+++.|++.|+   .|+...|.+..
T Consensus         1 MkIgiI-G~G~mG~~ia~~l~~~g~---~v~~~~~~~~~   35 (152)
T d1i36a2           1 LRVGFI-GFGEVAQTLASRLRSRGV---EVVTSLEGRSP   35 (152)
T ss_dssp             CEEEEE-SCSHHHHHHHHHHHHTTC---EEEECCTTCCH
T ss_pred             CEEEEE-cHHHHHHHHHHHHHHCCC---eEEEEcCchhH
Confidence            578887 459999999999999987   67777766543

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.61  E-value=0.61  Score=30.44  Aligned_cols=36  Identities=17%  Similarity=0.104  Sum_probs=29.0

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++|+|.|| |..|-..+.+|.+.|..  .|.++.|...
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~--~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGYS--DITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTCC--CEEEEESSSS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCCC--eEEEEEecCc
Confidence            578888765 89999999999999863  4888888643

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.26  E-value=0.25  Score=31.41  Aligned_cols=35  Identities=29%  Similarity=0.414  Sum_probs=28.1

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +++++|. |+|++|.+++..|.+.|.   +|.++.|.+.
T Consensus        32 ~~~vvIi-GgG~iG~E~A~~l~~~g~---~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIII-GGGFIGLELAGNLAEAGY---HVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEE-ECSHHHHHHHHHHHHTTC---EEEEECSSSC
T ss_pred             CCcEEEE-CCcHHHHHHHHHhhcccc---eEEEEecccc
Confidence            4667664 569999999999999986   7888888643

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=84.92  E-value=0.95  Score=29.05  Aligned_cols=34  Identities=26%  Similarity=0.451  Sum_probs=28.3

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      +++|+|. |+|++|.+++..|.+.+.   +|.++.|..
T Consensus        35 ~k~v~VI-GgG~iG~E~A~~l~~~g~---~Vtvie~~~   68 (133)
T d1q1ra2          35 DNRLVVI-GGGYIGLEVAATAIKANM---HVTLLDTAA   68 (133)
T ss_dssp             TCEEEEE-CCSHHHHHHHHHHHHTTC---EEEEECSSS
T ss_pred             CCEEEEE-CCchHHHHHHHHHHhhCc---ceeeeeecc
Confidence            5778887 469999999999999976   788888853

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=84.90  E-value=0.75  Score=33.50  Aligned_cols=34  Identities=15%  Similarity=0.430  Sum_probs=27.4

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ++|+|+|.| +|+.|...+..|.+.|.   +|.++-+.
T Consensus         1 k~KKI~IIG-aG~sGL~aA~~L~k~G~---~V~viEk~   34 (314)
T d2bi7a1           1 KSKKILIVG-AGFSGAVIGRQLAEKGH---QVHIIDQR   34 (314)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHTTTC---EEEEEESS
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHhCCC---CEEEEECC
Confidence            468888876 48999999999998876   68877764

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=84.74  E-value=1  Score=27.81  Aligned_cols=35  Identities=17%  Similarity=0.058  Sum_probs=28.1

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+++|+|. |+|++|.+++..|.+.+.   +|.++.|.+
T Consensus        21 ~~~~vvVv-GgG~ig~E~A~~l~~~g~---~vt~i~~~~   55 (121)
T d1mo9a2          21 PGSTVVVV-GGSKTAVEYGCFFNATGR---RTVMLVRTE   55 (121)
T ss_dssp             CCSEEEEE-CCSHHHHHHHHHHHHTTC---EEEEECSSC
T ss_pred             CCCEEEEE-CCCHHHHHHHHHHHhcch---hheEeeccc
Confidence            35778775 569999999999999876   788888853

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=84.44  E-value=0.57  Score=30.98  Aligned_cols=36  Identities=28%  Similarity=0.283  Sum_probs=28.2

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      .+.+|+|.|+ |.+|...+..+...+..  .|++..+++
T Consensus        32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~--~vv~~~~~~   67 (172)
T d1h2ba2          32 PGAYVAIVGV-GGLGHIAVQLLKVMTPA--TVIALDVKE   67 (172)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCC--EEEEEESSH
T ss_pred             CCCEEEEeCC-ChHHHHHHHHHHhhcCc--ccccccchh
Confidence            4678999886 88999988888777764  777777764

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=84.43  E-value=1.4  Score=27.26  Aligned_cols=36  Identities=11%  Similarity=0.116  Sum_probs=26.4

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      ++++|.| +|++|.+++..+.+....-.+|.++.|.+
T Consensus        19 ~~v~IiG-gG~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          19 KRALCVG-GGYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             SEEEEEC-SSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CeEEEEC-CChHHHHHHHHhHhhcccccccceecccc
Confidence            5777765 58999999987776643334899988854

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=83.68  E-value=1.3  Score=29.05  Aligned_cols=41  Identities=20%  Similarity=0.263  Sum_probs=33.0

Q ss_pred             chhhhh-cCCeEEEEcCC---ChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          58 PIQEFF-RDASVFVTGGT---GFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        58 ~i~~~~-~~~~VlVTGat---GfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      .+.+.+ +.++|+|.||+   +-.|..+++.|.+.|+   +|+.+...
T Consensus        11 ~i~~~L~~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~---~v~pVnP~   55 (139)
T d2d59a1          11 DIREILTRYKKIALVGASPKPERDANIVMKYLLEHGY---DVYPVNPK   55 (139)
T ss_dssp             HHHHHHHHCCEEEEETCCSCTTSHHHHHHHHHHHTTC---EEEEECTT
T ss_pred             HHHHHHhcCCeEEEEeecCCCCCchHHHHHHHHHCCC---EEEEECCc
Confidence            344444 78999999997   7899999999999987   68777653

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.79  E-value=1  Score=30.23  Aligned_cols=33  Identities=21%  Similarity=0.187  Sum_probs=27.8

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPK  102 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~  102 (121)
                      |+|.|.|| |..|+.++..|...++   +|.+..|..
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~---~V~l~~r~~   33 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGN---EVRIWGTEF   33 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC---EEEEECCGG
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC---EEEEEEecc
Confidence            67888877 7789999999999987   788888853

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=82.29  E-value=1.4  Score=29.96  Aligned_cols=37  Identities=19%  Similarity=0.127  Sum_probs=31.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +.+++|.|.|.+. ||+.+++.+...|.   +|+...|.+.
T Consensus        40 l~gk~vgIiG~G~-IG~~va~~l~~~g~---~v~~~d~~~~   76 (181)
T d1qp8a1          40 IQGEKVAVLGLGE-IGTRVGKILAALGA---QVRGFSRTPK   76 (181)
T ss_dssp             CTTCEEEEESCST-HHHHHHHHHHHTTC---EEEEECSSCC
T ss_pred             ccCceEEEecccc-ccccceeeeecccc---cccccccccc
Confidence            6789999988654 99999999999987   7999998653

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=82.02  E-value=1.2  Score=31.09  Aligned_cols=35  Identities=20%  Similarity=0.240  Sum_probs=29.5

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ++|++|+|-| -|-+|+++++.|.+.|.   +|++...+
T Consensus        25 L~gk~v~IqG-~G~VG~~~A~~L~~~Ga---kvvv~d~d   59 (201)
T d1c1da1          25 LDGLTVLVQG-LGAVGGSLASLAAEAGA---QLLVADTD   59 (201)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHTTC---EEEEECSC
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHCCC---EEEEecch
Confidence            6889999986 78899999999999987   67766654

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.62  E-value=1.3  Score=28.26  Aligned_cols=34  Identities=32%  Similarity=0.417  Sum_probs=25.4

Q ss_pred             CCeEEEEcCCChHHHHHHHHHHH----hCCCccEEEEEecCC
Q psy3445          65 DASVFVTGGTGFMGKILVEKLLR----AIPHLKHIYLLVRPK  102 (121)
Q Consensus        65 ~~~VlVTGatGfIGs~ll~~Ll~----~~~~~~~V~~l~R~~  102 (121)
                      .++++|.|| ||+|.+++..|.+    .+.   +|+.+.+..
T Consensus        37 ~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~---~Vt~i~~~~   74 (137)
T d1m6ia2          37 VKSITIIGG-GFLGSELACALGRKARALGT---EVIQLFPEK   74 (137)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHHHHHTC---EEEEECSSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHHHHhcCC---EEEEecccc
Confidence            577888755 9999999988864    333   788887743

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=81.52  E-value=1.6  Score=28.00  Aligned_cols=33  Identities=9%  Similarity=0.114  Sum_probs=26.4

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      .|+|+|. |-+|..++++|.+.+.   .++++..++.
T Consensus         5 HiII~G~-g~~g~~l~~~L~~~~~---~v~vId~d~~   37 (153)
T d1id1a_           5 HFIVCGH-SILAINTILQLNQRGQ---NVTVISNLPE   37 (153)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTC---CEEEEECCCH
T ss_pred             EEEEECC-CHHHHHHHHHHHHcCC---CEEEEeccch
Confidence            4777777 7999999999999976   5777777653

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.42  E-value=1.4  Score=30.02  Aligned_cols=33  Identities=12%  Similarity=0.252  Sum_probs=26.1

Q ss_pred             eEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          67 SVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        67 ~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      +++|.|| |++|.+++..|.+.++. .+|.++.+.
T Consensus         6 ~~vIvG~-G~aG~~~A~~Lr~~~~~-~~I~li~~e   38 (213)
T d1m6ia1           6 PFLLIGG-GTAAFAAARSIRARDPG-ARVLIVSED   38 (213)
T ss_dssp             EEEEESC-SHHHHHHHHHHHHHSTT-CEEEEEESS
T ss_pred             CEEEECC-cHHHHHHHHHHHhcCCC-CcEEEEeCC
Confidence            4566655 99999999999998875 478888764

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=81.31  E-value=1.1  Score=29.74  Aligned_cols=38  Identities=16%  Similarity=0.375  Sum_probs=27.4

Q ss_pred             cCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          64 RDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        64 ~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      +..+|.|.| .|++|+..++.+.+. +++.-+.+..|+..
T Consensus         2 ~kirvgiiG-~G~ig~~~~~~l~~~-~~~elvav~~~~~~   39 (170)
T d1f06a1           2 TNIRVAIVG-YGNLGRSVEKLIAKQ-PDMDLVGIFSRRAT   39 (170)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHTTC-SSEEEEEEEESSSC
T ss_pred             CcceEEEEC-ChHHHHHHHHHHHhC-CCcEEEEEEecccc
Confidence            345789988 599999999988775 66555656666543

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=81.07  E-value=0.92  Score=27.96  Aligned_cols=37  Identities=30%  Similarity=0.302  Sum_probs=27.3

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ..++||+|+|.|++ .-|..++.+|...+.   +++.+.|.
T Consensus        28 ~~f~gK~VlVVG~g-~Sa~dia~~l~~~ak---~v~~~~~r   64 (107)
T d2gv8a2          28 ELFVGESVLVVGGA-SSANDLVRHLTPVAK---HPIYQSLL   64 (107)
T ss_dssp             GGGTTCCEEEECSS-HHHHHHHHHHTTTSC---SSEEEECT
T ss_pred             hhcCCCeEEEECCC-CCHHHHHHHHHHhcC---EEEEEEec
Confidence            45789999999875 678889999887754   45555553

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.94  E-value=0.66  Score=36.94  Aligned_cols=38  Identities=16%  Similarity=0.173  Sum_probs=31.2

Q ss_pred             hhhcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecC
Q psy3445          61 EFFRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRP  101 (121)
Q Consensus        61 ~~~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~  101 (121)
                      ..+.+.+|+|.|++| +|+++++.|+..|-  .++++++.+
T Consensus        21 ~~L~~s~VlvvG~gg-lG~Ei~knLvl~GV--g~itivD~d   58 (529)
T d1yova1          21 EALESAHVCLINATA-TGTEILKNLVLPGI--GSFTIIDGN   58 (529)
T ss_dssp             HHHHHCEEEECCCSH-HHHHHHHHHHTTTC--SEEEEECCS
T ss_pred             HHHhCCCEEEECCCH-HHHHHHHHHHHhcC--CEEEEEcCC
Confidence            457789999999855 99999999999865  588888654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=80.65  E-value=0.93  Score=29.96  Aligned_cols=34  Identities=24%  Similarity=0.221  Sum_probs=28.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      |+|.|. |.|..|+.+++.|++.++   +|++..|++.
T Consensus         2 MkIGvI-GlG~MG~~ma~~L~~~G~---~V~~~dr~~~   35 (178)
T d1pgja2           2 MDVGVV-GLGVMGANLALNIAEKGF---KVAVFNRTYS   35 (178)
T ss_dssp             BSEEEE-CCSHHHHHHHHHHHHTTC---CEEEECSSHH
T ss_pred             CEEEEE-eehHHHHHHHHHHHHCCC---eEEEEECCHH
Confidence            567665 679999999999999998   5888888654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=80.24  E-value=0.96  Score=30.91  Aligned_cols=38  Identities=13%  Similarity=0.026  Sum_probs=28.3

Q ss_pred             hcCCeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          63 FRDASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        63 ~~~~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      -.|.+|+|.|+ |-+|...+......+.  .+|++..+++.
T Consensus        24 ~~G~tVlV~Ga-G~vGl~a~~~ak~~ga--~~Vi~~d~~~~   61 (195)
T d1kola2          24 GPGSTVYVAGA-GPVGLAAAASARLLGA--AVVIVGDLNPA   61 (195)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--SEEEEEESCHH
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHhhcc--cceeeecccch
Confidence            35789999986 8889777766666655  48888888643

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.20  E-value=1.3  Score=28.95  Aligned_cols=34  Identities=21%  Similarity=0.265  Sum_probs=28.1

Q ss_pred             CeEEEEcCCChHHHHHHHHHHHhCCCccEEEEEecCCC
Q psy3445          66 ASVFVTGGTGFMGKILVEKLLRAIPHLKHIYLLVRPKK  103 (121)
Q Consensus        66 ~~VlVTGatGfIGs~ll~~Ll~~~~~~~~V~~l~R~~~  103 (121)
                      ++|.+. |.|.+|+.+++.|++.|+   .|++..|++.
T Consensus         2 ~kIg~I-GlG~MG~~iA~~L~~~g~---~v~~~d~~~~   35 (162)
T d3cuma2           2 KQIAFI-GLGHMGAPMATNLLKAGY---LLNVFDLVQS   35 (162)
T ss_dssp             CEEEEE-CCSTTHHHHHHHHHHTTC---EEEEECSSHH
T ss_pred             CEEEEE-EEHHHHHHHHHHHHHCCC---eEEEEECchh
Confidence            357776 569999999999999988   7999888743