Psyllid ID: psy3483

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccHHHHHHcccccccccccccHHHHccccHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccccccEEccccHHHHHHHHHHHHHcccccccccEcccccccccccHHHHHHHHHHccccccccccHHHHHHHccccHHHHHHHHccccc
Coil and Loop (DISEMBL)
MKSTELIVTCMYCSKILTYETETIMNHCKfckavsrptkyqRYVCCLcskyrhsdaskmrshirthtkdrpykcfycdyrsnersnVKAHMIRRHSVKP
Flexible Loop (DISEMBL)
MKSTELIVTCMYCSKILTYETETIMNHCKFCkavsrptkYQRYVCCLCSkyrhsdaskmrshirthtkdrpykCFYCdyrsnersnvkahmirrhsvkp
Low Complexity Region (SEG)
MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP
Disordered region (IsUnstruct)
*****LIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHS********IRTHTKDRPYKCFYCDYR*******************
Disordered Region (DISOPRED)
MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH****
Disordered Region (DISEMBL)
MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRH***********THTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP
Disordered Region (DISPRO)
**STELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
Q01611	794	Zinc finger Y-chromosomal	N/A	N/A	0.525	0.065	0.472	4e-08
P08048	801	Zinc finger Y-chromosomal	yes	N/A	0.707	0.087	0.364	6e-08
P41696	914	Asparagine-rich zinc fing	yes	N/A	0.828	0.089	0.288	7e-08
P10925	782	Zinc finger Y-chromosomal	yes	N/A	0.777	0.098	0.388	1e-07
Q8K083	1302	Zinc finger protein 536 O	no	N/A	0.575	0.043	0.423	1e-07
O15090	1300	Zinc finger protein 536 O	no	N/A	0.575	0.043	0.423	1e-07
Q92618	1163	Zinc finger protein 516 O	no	N/A	0.515	0.043	0.433	1e-07
Q6B4Z5	801	Zinc finger Y-chromosomal	no	N/A	0.707	0.087	0.352	1e-07
Q52V16	801	Zinc finger Y-chromosomal	N/A	N/A	0.707	0.087	0.352	1e-07
P20662	777	Zinc finger Y-chromosomal	no	N/A	0.777	0.099	0.388	2e-07

>sp|Q01611|ZFY1_XENLA Zinc finger Y-chromosomal protein 1 OS=Xenopus laevis GN=zfy1 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 39/55 (70%), Gaps = 3/55 (5%)

Query: 43  YVCCLCSK-YRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
           ++C  C K +RH   S+++ H+RTHT ++PY C YCDYRS + SN+K H+  +HS
Sbjct: 537 HICVECGKGFRH--PSELKKHMRTHTGEKPYLCQYCDYRSADSSNLKTHVKTKHS 589

Probable transcriptional activator.
Xenopus laevis (taxid: 8355)

>sp|P08048|ZFY_HUMAN Zinc finger Y-chromosomal protein OS=Homo sapiens GN=ZFY PE=1 SV=3

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 15/85 (17%)

Query: 25  MNHCKFCK------------AVSRPTKYQRYVCCLCSK-YRHSDASKMRSHIRTHTKDRP 71
           M+ CKFC+             ++  +K   ++C  C K +RH   S++R H+R HT ++P
Sbjct: 514 MHKCKFCEYETAEQGLLNRHLLAVHSKNFPHICVECGKGFRH--PSELRKHMRIHTGEKP 571

Query: 72  YKCFYCDYRSNERSNVKAHMIRRHS 96
           Y+C YC+YRS + SN+K H+  +HS
Sbjct: 572 YQCQYCEYRSADSSNLKTHIKTKHS 596

Probable transcriptional activator. Binds to the consensus sequence 5'-AGGCCY-3'.

Homo sapiens (taxid: 9606)

>sp|P41696|AZF1_YEAST Asparagine-rich zinc finger protein AZF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AZF1 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 8/90 (8%)

Query: 10  CMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKD 69
           C YC ++ +  T   ++       V     Y+ +VC  C K R +    +R+H R HT +
Sbjct: 595 CPYCHRLFSQATHLEVH-------VRSHIGYKPFVCDYCGK-RFTQGGNLRTHERLHTGE 646

Query: 70  RPYKCFYCDYRSNERSNVKAHMIRRHSVKP 99
           +PY C  CD + + + N+ AH++    +KP
Sbjct: 647 KPYSCDICDKKFSRKGNLAAHLVTHQKLKP 676

Potential transcription factor; suppressor for a mitochondrial RNA polymerase mutant.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P10925|ZFY1_MOUSE Zinc finger Y-chromosomal protein 1 OS=Mus musculus GN=Zfy1 PE=2 SV=3

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 13/90 (14%)

Query: 10  CMYCSKILTYET--ETIMNHCKFCKAVSRPTKYQRYVCCLCSK-YRHSDASKMRSHIRTH 66
           C +C     YET  +T++NH      V R  K   ++C  C K +RH   S ++ HIR H
Sbjct: 499 CKFCD----YETAEQTLLNH--HLLVVHR--KKFPHICGECGKGFRH--PSALKKHIRVH 548

Query: 67  TKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
           T ++PY+C YC+Y+S + SN+K H+  +HS
Sbjct: 549 TGEKPYECQYCEYKSADSSNLKTHIKSKHS 578

Probable transcriptional activator. Binds to the consensus sequence 5'-AGGCCY-3'.

Mus musculus (taxid: 10090)

>sp|Q8K083|ZN536_MOUSE Zinc finger protein 536 OS=Mus musculus GN=Znf536 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 39  KYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSV 97
           K ++Y C LC K R    S +  H+RTHT ++P+KC YCD+R+ ++ N+K H+ R H +
Sbjct: 126 KNRKYPCPLCGK-RFRFNSILSLHMRTHTGEKPFKCPYCDHRAAQKGNLKIHL-RTHKL 182

May be involved in transcriptional regulation. Recognizes and binds 2 copies of the core DNA sequence 5'-CCCCCA-3'.

Mus musculus (taxid: 10090)

>sp|O15090|ZN536_HUMAN Zinc finger protein 536 OS=Homo sapiens GN=ZNF536 PE=1 SV=3

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 39  KYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSV 97
           K ++Y C LC K R    S +  H+RTHT ++P+KC YCD+R+ ++ N+K H+ R H +
Sbjct: 126 KNRKYPCPLCGK-RFRFNSILSLHMRTHTGEKPFKCPYCDHRAAQKGNLKIHL-RTHKL 182

May be involved in transcriptional regulation. Recognizes and binds 2 copies of the core DNA sequence 5'-CCCCCA-3'.

Homo sapiens (taxid: 9606)

>sp|Q92618|ZN516_HUMAN Zinc finger protein 516 OS=Homo sapiens GN=ZNF516 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 2/53 (3%)

Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
          + CC+C K      S +  H+R HT ++PYKC YCD+R++++ N+K H IR H
Sbjct: 34 HTCCICGK-SFPFQSSLSQHMRKHTGEKPYKCPYCDHRASQKGNLKIH-IRSH 84

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q6B4Z5|ZFY_PANTR Zinc finger Y-chromosomal protein OS=Pan troglodytes GN=ZFY PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 15/85 (17%)

Query: 25  MNHCKFCK------------AVSRPTKYQRYVCCLCSK-YRHSDASKMRSHIRTHTKDRP 71
           M+ CKFC+             ++  +K   ++C  C K +RH   S+++ H+R HT ++P
Sbjct: 514 MHKCKFCEYETAEQGLLNRHLLAVHSKNFPHICVECGKGFRH--PSELKKHMRIHTGEKP 571

Query: 72  YKCFYCDYRSNERSNVKAHMIRRHS 96
           Y+C YC+YRS + SN+K H+  +HS
Sbjct: 572 YQCQYCEYRSADSSNLKTHIKTKHS 596

Probable transcriptional activator. Binds to the consensus sequence 5'-AGGCCY-3'.

Pan troglodytes (taxid: 9598)

>sp|Q52V16|ZFY_GORGO Zinc finger Y-chromosomal protein OS=Gorilla gorilla gorilla GN=ZFY PE=3 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 15/85 (17%)

Query: 25  MNHCKFCK------------AVSRPTKYQRYVCCLCSK-YRHSDASKMRSHIRTHTKDRP 71
           M+ CKFC+             ++  +K   ++C  C K +RH   S+++ H+R HT ++P
Sbjct: 514 MHKCKFCEYETAEQGLLNRHLLAVHSKNFPHICVECGKGFRH--PSELKKHMRIHTGEKP 571

Query: 72  YKCFYCDYRSNERSNVKAHMIRRHS 96
           Y+C YC+YRS + SN+K H+  +HS
Sbjct: 572 YQCQYCEYRSADSSNLKTHIKTKHS 596

Probable transcriptional activator. Binds to the consensus sequence 5'-AGGCCY-3'.

Gorilla gorilla gorilla (taxid: 9595)

>sp|P20662|ZFY2_MOUSE Zinc finger Y-chromosomal protein 2 OS=Mus musculus GN=Zfy2 PE=2 SV=2

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 13/90 (14%)

Query: 10  CMYCSKILTYET--ETIMNHCKFCKAVSRPTKYQRYVCCLCSK-YRHSDASKMRSHIRTH 66
           C +C     YET  +T++NH      V R  K   ++C  C K +RH   S ++ HIR H
Sbjct: 493 CKFCD----YETAEQTLLNH--HLLVVHR--KKFPHICGECGKGFRH--PSALKKHIRVH 542

Query: 67  TKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
           T ++PY+C YC+Y+S + SN+K H+  +HS
Sbjct: 543 TGEKPYECQYCEYKSADSSNLKTHIKSKHS 572

Probable transcriptional activator. Binds to the consensus sequence 5'-AGGCCY-3'.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
148697801	601	mCG113954, isoform CRA_a [Mus musculus]	0.707	0.116	0.352	3e-07
260792169	1244	hypothetical protein BRAFLDRAFT_119065 [	0.555	0.044	0.464	3e-07
292627544	739	PREDICTED: zinc finger X-chromosomal pro	0.727	0.097	0.367	4e-07
432897599	668	PREDICTED: zinc finger X-chromosomal pro	0.727	0.107	0.367	6e-07
50293023	642	hypothetical protein [Candida glabrata C	0.828	0.127	0.333	7e-07
348518602	711	PREDICTED: zinc finger X-chromosomal pro	0.727	0.101	0.367	7e-07
410915698	875	PREDICTED: zinc finger X-chromosomal pro	0.707	0.08	0.364	9e-07
432909916	913	PREDICTED: uncharacterized protein LOC10	0.888	0.096	0.3	1e-06
301611414	793	PREDICTED: zinc finger Y-chromosomal pro	0.919	0.114	0.319	1e-06
148228689	794	zinc finger Y-chromosomal protein 1 [Xen	0.919	0.114	0.319	1e-06

>gi|148697801|gb|EDL29748.1| mCG113954, isoform CRA_a [Mus musculus] gi|148697802|gb|EDL29749.1| mCG113954, isoform CRA_a [Mus musculus]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 15/85 (17%)

Query: 25  MNHCKFCK------------AVSRPTKYQRYVCCLCSK-YRHSDASKMRSHIRTHTKDRP 71
           M+ CKFC+             ++  +K   ++C  C K +RH   S+++ H+R HT ++P
Sbjct: 512 MHKCKFCEYETAEQGLLNRHLLAVHSKNFPHICVECGKGFRHP--SELKKHMRIHTGEKP 569

Query: 72  YKCFYCDYRSNERSNVKAHMIRRHS 96
           Y+C YC+YRS + SN+K H+  +HS
Sbjct: 570 YECQYCEYRSADSSNLKTHVKTKHS 594

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260792169|ref|XP_002591089.1| hypothetical protein BRAFLDRAFT_119065 [Branchiostoma floridae] gi|229276289|gb|EEN47100.1| hypothetical protein BRAFLDRAFT_119065 [Branchiostoma floridae]

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/56 (46%), Positives = 39/56 (69%), Gaps = 1/56 (1%)

Query: 41   QRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
            Q +VC  C K   S A+ ++ H+RTHT ++PYKC +CD R  E S++K+H+IR H+
Sbjct: 1159 QPHVCGDCGK-GFSKANNLQDHMRTHTGEKPYKCQHCDMRFTESSSLKSHVIRNHT 1213

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|292627544|ref|XP_688842.3| PREDICTED: zinc finger X-chromosomal protein [Danio rerio]

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 15/87 (17%)

Query: 23  TIMNHCKFCK------------AVSRPTKYQRYVCCLCSK-YRHSDASKMRSHIRTHTKD 69
           T M+ CKFC+             ++  +K   ++C  C K +RH   S+++ H+RTHT +
Sbjct: 440 TKMHKCKFCEYETAEQGLLNRHLLAVHSKNFPHICVECGKGFRH--PSELKKHMRTHTGE 497

Query: 70  RPYKCFYCDYRSNERSNVKAHMIRRHS 96
           +PY C YCDY+S + SN+K H+  +HS
Sbjct: 498 KPYSCLYCDYKSADSSNLKTHVKTKHS 524

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432897599|ref|XP_004076469.1| PREDICTED: zinc finger X-chromosomal protein-like [Oryzias latipes]

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 15/87 (17%)

Query: 23  TIMNHCKFCK------------AVSRPTKYQRYVCCLCSK-YRHSDASKMRSHIRTHTKD 69
           T M+ CKFC              ++  +K   ++C  C K +RH   S+++ H+RTHT +
Sbjct: 387 TKMHKCKFCNYETAEQGLLNRHLLAVHSKSFPHICVECGKGFRH--PSELKKHMRTHTGE 444

Query: 70  RPYKCFYCDYRSNERSNVKAHMIRRHS 96
           +PY C YCDY+S + SN+K H+  +HS
Sbjct: 445 KPYSCLYCDYKSADSSNLKTHIKTKHS 471

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|50293023|ref|XP_448944.1| hypothetical protein [Candida glabrata CBS 138] gi|49528257|emb|CAG61914.1| unnamed protein product [Candida glabrata]

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 8/90 (8%)

Query: 10  CMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKD 69
           C YCSK+ +  T   ++       +     Y+ + C  C K R + A  +R+H R HT +
Sbjct: 482 CAYCSKMFSQSTHLDVH-------IKAHMGYKPFECEFCGK-RFTQAGNLRTHRRLHTGE 533

Query: 70  RPYKCFYCDYRSNERSNVKAHMIRRHSVKP 99
           RP+KC  CD     R N+ AH     S+KP
Sbjct: 534 RPFKCDKCDKTFARRGNLTAHEFTHESIKP 563

Source: Candida glabrata CBS 138

Species: Candida glabrata

Genus: Nakaseomyces

Family: Saccharomycetaceae

Order: Saccharomycetales

Class: Saccharomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|348518602|ref|XP_003446820.1| PREDICTED: zinc finger X-chromosomal protein-like [Oreochromis niloticus]

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 15/87 (17%)

Query: 23  TIMNHCKFCK------------AVSRPTKYQRYVCCLCSK-YRHSDASKMRSHIRTHTKD 69
           T M+ CKFC              ++  +K   ++C  C K +RH   S+++ H+RTHT +
Sbjct: 417 TKMHKCKFCDYETAEQGLLNRHLLAVHSKSFPHICVECGKGFRH--PSELKKHMRTHTGE 474

Query: 70  RPYKCFYCDYRSNERSNVKAHMIRRHS 96
           +PY C YCDY+S + SN+K H+  +HS
Sbjct: 475 KPYSCLYCDYKSADSSNLKTHIKTKHS 501

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410915698|ref|XP_003971324.1| PREDICTED: zinc finger X-chromosomal protein-like [Takifugu rubripes]

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 15/85 (17%)

Query: 25  MNHCKFCK------------AVSRPTKYQRYVCCLCSK-YRHSDASKMRSHIRTHTKDRP 71
           M+ CKFC              ++  +K   ++C  C K +RH   S+++ H+RTHT ++P
Sbjct: 596 MHKCKFCDYETAEQGLLNRHLLAVHSKSFPHICVECGKGFRH--PSELKKHMRTHTGEKP 653

Query: 72  YKCFYCDYRSNERSNVKAHMIRRHS 96
           Y C YCDY+S + SN+K H+  +HS
Sbjct: 654 YSCLYCDYKSADSSNLKTHIKTKHS 678

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432909916|ref|XP_004078228.1| PREDICTED: uncharacterized protein LOC101163928 [Oryzias latipes]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 22/110 (20%)

Query: 7   IVTCMYCSKILTY----ETETIMNH------CKFC-KAVSRPTKYQR----------YVC 45
           ++ C  C +I  Y    E   I +       C+ C KA  R +  QR          +VC
Sbjct: 750 VLCCQLCPRIFFYLSDLERHAITHSQKKPHVCQQCGKAFKRSSHLQRHKHIHTGQRNFVC 809

Query: 46  CLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
            +C+K R  +A +++ H R HT ++PY+C  C  R  ER+ ++ H  R+H
Sbjct: 810 SICTK-RFREAGELQRHQRVHTGEKPYQCQLCHTRFAERNTLRRHTKRKH 858

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301611414|ref|XP_002935227.1| PREDICTED: zinc finger Y-chromosomal protein 1 [Xenopus (Silurana) tropicalis]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 28/119 (23%)

Query: 4   TELIVTCMYCSKILTYETETI-------------MNHCKFCK------------AVSRPT 38
           TE  + C  C KI  +                  M+ CKFC              ++  +
Sbjct: 472 TEKDLECEECGKIFLHANALFAHKLTHKEKAGNKMHRCKFCDYETAEQGLLNRHLLAVHS 531

Query: 39  KYQRYVCCLCSK-YRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
           K   ++C  C K +RH   S+++ H+RTHT ++PY C YCDYRS + SN+K H+  +HS
Sbjct: 532 KSFPHICVECGKGFRH--PSELKKHMRTHTGEKPYLCQYCDYRSADSSNLKTHVKTKHS 588

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148228689|ref|NP_001081639.1| zinc finger Y-chromosomal protein 1 [Xenopus laevis] gi|47123880|gb|AAH70611.1| XZFY-1 protein [Xenopus laevis]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 28/119 (23%)

Query: 4   TELIVTCMYCSKILTYETETI-------------MNHCKFCK------------AVSRPT 38
           TE  + C  C KI  +                  M+ CKFC              ++  +
Sbjct: 473 TEKDLECEECGKIFLHANALFAHKLTHNEKAGNKMHRCKFCDYETAEQGLLNRHLLAVHS 532

Query: 39  KYQRYVCCLCSK-YRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
           K   ++C  C K +RH   S+++ H+RTHT ++PY C YCDYRS + SN+K H+  +HS
Sbjct: 533 KSFPHICVECGKGFRH--PSELKKHMRTHTGEKPYLCQYCDYRSADSSNLKTHVKTKHS 589

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
MGI|MGI:99213	777	Zfy2 "zinc finger protein 2, Y	0.808	0.102	0.406	8.4e-11
MGI|MGI:99212	782	Zfy1 "zinc finger protein 1, Y	0.808	0.102	0.406	8.5e-11
UNIPROTKB|P80944	148	ZFX "Zinc finger X-chromosomal	0.808	0.540	0.370	1.2e-10
UNIPROTKB|Q29419	148	ZFY "Zinc finger Y-chromosomal	0.808	0.540	0.370	1.2e-10
ZFIN|ZDB-GENE-061220-2	739	zfx "zinc finger protein, X-li	0.828	0.110	0.384	1.3e-10
UNIPROTKB|G3V1B0	205	OVOL1 "Putative transcription	0.848	0.409	0.326	3.2e-10
UNIPROTKB|F1NBG4	394	ZFX "Uncharacterized protein"	0.838	0.210	0.369	4.2e-10
UNIPROTKB|O14753	267	OVOL1 "Putative transcription	0.848	0.314	0.326	6.7e-10
UNIPROTKB|A2VDT4	267	OVOL1 "Putative transcription	0.848	0.314	0.326	8.6e-10
UNIPROTKB|E2RIZ1	267	OVOL1 "Uncharacterized protein	0.848	0.314	0.326	8.6e-10

MGI|MGI:99213 Zfy2 "zinc finger protein 2, Y linked" [Mus musculus (taxid:10090)]

 Score = 162 (62.1 bits), Expect = 8.4e-11, P = 8.4e-11
 Identities = 37/91 (40%), Positives = 55/91 (60%)

Query:     9 TCMYCSKILTYET--ETIMNHCKFCKAVSRPTKYQRYVCCLCSK-YRHSDASKMRSHIRT 65
             TC  C K   YET  +T++NH      V R  K+  ++C  C K +RH  A  ++ HIR 
Sbjct:   490 TCK-C-KFCDYETAEQTLLNH--HLLVVHRK-KFP-HICGECGKGFRHPSA--LKKHIRV 541

Query:    66 HTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
             HT ++PY+C YC+Y+S + SN+K H+  +HS
Sbjct:   542 HTGEKPYECQYCEYKSADSSNLKTHIKSKHS 572

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:99212 Zfy1 "zinc finger protein 1, Y linked" [Mus musculus (taxid:10090)]

 Score = 162 (62.1 bits), Expect = 8.5e-11, P = 8.5e-11
 Identities = 37/91 (40%), Positives = 55/91 (60%)

Query:     9 TCMYCSKILTYET--ETIMNHCKFCKAVSRPTKYQRYVCCLCSK-YRHSDASKMRSHIRT 65
             TC  C K   YET  +T++NH      V R  K+  ++C  C K +RH  A  ++ HIR 
Sbjct:   496 TCK-C-KFCDYETAEQTLLNH--HLLVVHRK-KFP-HICGECGKGFRHPSA--LKKHIRV 547

Query:    66 HTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
             HT ++PY+C YC+Y+S + SN+K H+  +HS
Sbjct:   548 HTGEKPYECQYCEYKSADSSNLKTHIKSKHS 578

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|P80944 ZFX "Zinc finger X-chromosomal protein" [Sus scrofa (taxid:9823)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 33/89 (37%), Positives = 54/89 (60%)

Query:    11 MYCSKILTYET--ETIMNHCKFCKAVSRPTKYQRYVCCLCSK-YRHSDASKMRSHIRTHT 67
             M+  K   YET  + ++N  +   AV   +K   ++C  C K +RH   S+++ H+R HT
Sbjct:    46 MHKCKFCEYETAEQGLLN--RHLLAVH--SKNFPHICVECGKGFRHP--SELKKHMRIHT 99

Query:    68 KDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
              ++PY+C YC+YRS + SN+K H+  +HS
Sbjct:   100 GEKPYQCQYCEYRSADSSNLKTHVKTKHS 128

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q29419 ZFY "Zinc finger Y-chromosomal protein" [Sus scrofa (taxid:9823)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 33/89 (37%), Positives = 54/89 (60%)

Query:    11 MYCSKILTYET--ETIMNHCKFCKAVSRPTKYQRYVCCLCSK-YRHSDASKMRSHIRTHT 67
             M+  K   YET  + ++N  +   AV   +K   ++C  C K +RH   S+++ H+R HT
Sbjct:    46 MHKCKFCEYETAEQGLLN--RHLLAVH--SKNFPHICVECGKGFRHP--SELKKHMRIHT 99

Query:    68 KDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
              ++PY+C YC+YRS + SN+K H+  +HS
Sbjct:   100 GEKPYQCQYCEYRSADSSNLKTHVKTKHS 128

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-061220-2 zfx "zinc finger protein, X-linked" [Danio rerio (taxid:7955)]

 Score = 160 (61.4 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 35/91 (38%), Positives = 55/91 (60%)

Query:     9 TCMYCSKILTYET--ETIMNHCKFCKAVSRPTKYQRYVCCLCSK-YRHSDASKMRSHIRT 65
             T M+  K   YET  + ++N  +   AV   +K   ++C  C K +RH   S+++ H+RT
Sbjct:   440 TKMHKCKFCEYETAEQGLLN--RHLLAVH--SKNFPHICVECGKGFRHP--SELKKHMRT 493

Query:    66 HTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
             HT ++PY C YCDY+S + SN+K H+  +HS
Sbjct:   494 HTGEKPYSCLYCDYKSADSSNLKTHVKTKHS 524

GO:0046872 "metal ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|G3V1B0 OVOL1 "Putative transcription factor Ovo-like 1" [Homo sapiens (taxid:9606)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 30/92 (32%), Positives = 48/92 (52%)

Query:     7 IVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTH 66
             + TC  C K  TY+   +  H K C         +R++C  C K   +D   ++ H+RTH
Sbjct:    55 LFTCRVCQKAFTYQ-RMLNRHMK-CH-----NDVKRHLCTYCGK-GFNDTFDLKRHVRTH 106

Query:    67 TKDRPYKCFYCDYRSNERSNVKAHMIRRHSVK 98
             T  RPYKC  CD    +R ++++H+ + H V+
Sbjct:   107 TGVRPYKCSLCDKAFTQRCSLESHLKKIHGVQ 138

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000239 "pachytene" evidence=IEA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0007498 "mesoderm development" evidence=IEA

GO:0043588 "skin development" evidence=IEA

UNIPROTKB|F1NBG4 ZFX "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 151 (58.2 bits), Expect = 4.2e-10, P = 4.2e-10
 Identities = 34/92 (36%), Positives = 55/92 (59%)

Query:     8 VTCMYCSKILTYET--ETIMNHCKFCKAVSRPTKYQRYVCCLCSK-YRHSDASKMRSHIR 64
             V  M+  K   YET  + +++H     AV   +K   ++C  C K +RH   S+++ H+R
Sbjct:   104 VNKMHKCKFCDYETAEQGLLSH--HLLAVH--SKNFPHICVECGKGFRHP--SELKKHMR 157

Query:    65 THTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
              HT ++PY+C YC+YRS + SN+K H+  +HS
Sbjct:   158 IHTGEKPYQCQYCEYRSADSSNLKTHVKTKHS 189

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|O14753 OVOL1 "Putative transcription factor Ovo-like 1" [Homo sapiens (taxid:9606)]

 Score = 145 (56.1 bits), Expect = 6.7e-10, P = 6.7e-10
 Identities = 30/92 (32%), Positives = 48/92 (52%)

Query:     7 IVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTH 66
             + TC  C K  TY+   +  H K C         +R++C  C K   +D   ++ H+RTH
Sbjct:   117 LFTCRVCQKAFTYQ-RMLNRHMK-CH-----NDVKRHLCTYCGK-GFNDTFDLKRHVRTH 168

Query:    67 TKDRPYKCFYCDYRSNERSNVKAHMIRRHSVK 98
             T  RPYKC  CD    +R ++++H+ + H V+
Sbjct:   169 TGVRPYKCSLCDKAFTQRCSLESHLKKIHGVQ 200

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000239 "pachytene" evidence=IEA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0007498 "mesoderm development" evidence=IEA

GO:0043588 "skin development" evidence=IEA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IBA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IBA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|A2VDT4 OVOL1 "Putative transcription factor Ovo-like 1" [Bos taurus (taxid:9913)]

 Score = 144 (55.7 bits), Expect = 8.6e-10, P = 8.6e-10
 Identities = 30/92 (32%), Positives = 48/92 (52%)

Query:     7 IVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTH 66
             + TC  C K  TY+   +  H K C         +R++C  C K   +D   ++ H+RTH
Sbjct:   117 LFTCHICQKAFTYQ-RMLNRHMK-CH-----NDVKRHLCTYCGK-GFNDTFDLKRHVRTH 168

Query:    67 TKDRPYKCFYCDYRSNERSNVKAHMIRRHSVK 98
             T  RPYKC  CD    +R ++++H+ + H V+
Sbjct:   169 TGVRPYKCSLCDKAFTQRCSLESHLKKIHGVQ 200

GO:0005634 "nucleus" evidence=IEA

GO:0043588 "skin development" evidence=IEA

GO:0007498 "mesoderm development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IEA

GO:0000239 "pachytene" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2RIZ1 OVOL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 144 (55.7 bits), Expect = 8.6e-10, P = 8.6e-10
 Identities = 30/92 (32%), Positives = 48/92 (52%)

Query:     7 IVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTH 66
             + TC  C K  TY+   +  H K C         +R++C  C K   +D   ++ H+RTH
Sbjct:   117 LFTCHICQKAFTYQ-RMLNRHMK-CH-----NDVKRHLCTYCGK-GFNDTFDLKRHVRTH 168

Query:    67 TKDRPYKCFYCDYRSNERSNVKAHMIRRHSVK 98
             T  RPYKC  CD    +R ++++H+ + H V+
Sbjct:   169 TGVRPYKCSLCDKAFTQRCSLESHLKKIHGVQ 200

GO:0043588 "skin development" evidence=IEA

GO:0007498 "mesoderm development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IEA

GO:0000239 "pachytene" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
KOG2462|consensus	279		99.89
KOG2462|consensus	279		99.85
KOG3623|consensus	1007		99.66
KOG3576|consensus	267		99.63
KOG3623|consensus	1007		99.46
PHA00733	128	hypothetical protein	99.25
KOG3576|consensus	267		99.24
KOG1074|consensus	958		99.18
KOG3608|consensus	467		99.17
PHA02768	55	hypothetical protein; Provisional	99.07
KOG1074|consensus	958		98.98
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.96
PHA00616	44	hypothetical protein	98.88
KOG3608|consensus	467		98.8
PLN03086	567	PRLI-interacting factor K; Provisional	98.78
PHA02768	55	hypothetical protein; Provisional	98.71
PHA00733	128	hypothetical protein	98.48
PLN03086	567	PRLI-interacting factor K; Provisional	98.44
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.38
PHA00616	44	hypothetical protein	98.36
PHA00732	79	hypothetical protein	98.35
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.27
KOG3993|consensus	500		98.09
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.08
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.0
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.97
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.93
PHA00732	79	hypothetical protein	97.8
KOG3993|consensus	500		97.6
smart00355	26	ZnF_C2H2 zinc finger.	97.59
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.57
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.55
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.41
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.32
PRK04860	160	hypothetical protein; Provisional	97.25
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.22
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.12
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.12
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.03
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.61
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.32
PRK04860	160	hypothetical protein; Provisional	95.99
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.61
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	95.09
COG4049	65	Uncharacterized protein containing archaeal-type C	94.22
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	94.0
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	93.84
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	93.46
KOG1146|consensus	1406		93.36
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	92.95
COG5048	467	FOG: Zn-finger [General function prediction only]	91.9
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	91.83
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	90.54
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	90.52
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	90.5
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	90.41
PHA00626	59	hypothetical protein	90.15
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	90.08
PRK06266	178	transcription initiation factor E subunit alpha; V	90.04
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	89.04
COG5048	467	FOG: Zn-finger [General function prediction only]	88.98
COG1592	166	Rubrerythrin [Energy production and conversion]	88.92
KOG2186|consensus	276		88.56
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	87.47
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	86.39
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	86.27
PF03811	36	Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR0	85.31
KOG4167|consensus	907		84.8
smart00531	147	TFIIE Transcription initiation factor IIE.	84.45
PF09845	131	DUF2072: Zn-ribbon containing protein (DUF2072); I	84.32
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	83.94
PF14353	128	CpXC: CpXC protein	83.58
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	83.57
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	83.53
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	83.44
KOG3408|consensus	129		82.28
COG1198	730	PriA Primosomal protein N' (replication factor Y)	82.22
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	81.71
KOG2893|consensus	341		81.61
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	81.51
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	80.63
PF15269	54	zf-C2H2_7: Zinc-finger	80.4
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	80.39

>KOG2462|consensus

Probab=99.89  E-value=6.4e-24  Score=122.23  Aligned_cols=82  Identities=32%  Similarity=0.604  Sum_probs=63.8

Q ss_pred             eeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHH
Q psy3483           8 VTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNV   87 (99)
Q Consensus         8 ~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l   87 (99)
                      +.|.+|++.+..-- .|.+|      +++|+  -+.+|++||+.|... ..|+.|+++||||+||.|..|+++|..++||
T Consensus       162 ~~C~~C~K~YvSmp-ALkMH------irTH~--l~c~C~iCGKaFSRP-WLLQGHiRTHTGEKPF~C~hC~kAFADRSNL  231 (279)
T KOG2462|consen  162 FSCKYCGKVYVSMP-ALKMH------IRTHT--LPCECGICGKAFSRP-WLLQGHIRTHTGEKPFSCPHCGKAFADRSNL  231 (279)
T ss_pred             ccCCCCCceeeehH-HHhhH------hhccC--CCcccccccccccch-HHhhcccccccCCCCccCCcccchhcchHHH
Confidence            44444444444333 44444      55554  567899999987776 9999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCC
Q psy3483          88 KAHMIRRHSVKP   99 (99)
Q Consensus        88 ~~H~~~~~~~kp   99 (99)
                      ..|++||.+.|+
T Consensus       232 RAHmQTHS~~K~  243 (279)
T KOG2462|consen  232 RAHMQTHSDVKK  243 (279)
T ss_pred             HHHHHhhcCCcc
Confidence            999999998774

>KOG2462|consensus

Probab=99.85  E-value=7.6e-22  Score=113.76  Aligned_cols=83  Identities=22%  Similarity=0.389  Sum_probs=77.0

Q ss_pred             CCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCcccc
Q psy3483           3 STELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSN   82 (99)
Q Consensus         3 ~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~   82 (99)
                      +...++.|.+|||.|...= .|+-|      +++|+||+||.|..|++.|... ++|+.|+.+|.+.++|+|..|++.|.
T Consensus       183 TH~l~c~C~iCGKaFSRPW-LLQGH------iRTHTGEKPF~C~hC~kAFADR-SNLRAHmQTHS~~K~~qC~~C~KsFs  254 (279)
T KOG2462|consen  183 THTLPCECGICGKAFSRPW-LLQGH------IRTHTGEKPFSCPHCGKAFADR-SNLRAHMQTHSDVKKHQCPRCGKSFA  254 (279)
T ss_pred             ccCCCcccccccccccchH-Hhhcc------cccccCCCCccCCcccchhcch-HHHHHHHHhhcCCccccCcchhhHHH
Confidence            4457899999999999887 89999      9999999999999999988888 99999999999999999999999999


Q ss_pred             CchHHHHHHHH
Q psy3483          83 ERSNVKAHMIR   93 (99)
Q Consensus        83 ~~~~l~~H~~~   93 (99)
                      ..+.|..|...
T Consensus       255 l~SyLnKH~ES  265 (279)
T KOG2462|consen  255 LKSYLNKHSES  265 (279)
T ss_pred             HHHHHHHhhhh
Confidence            99999999753

>KOG3623|consensus

Probab=99.66  E-value=1.2e-17  Score=107.04  Aligned_cols=82  Identities=21%  Similarity=0.481  Sum_probs=75.2

Q ss_pred             CCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCcccc
Q psy3483           3 STELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSN   82 (99)
Q Consensus         3 ~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~   82 (99)
                      +++..|-|+.|+|.|...+ .|-+|      --.|+|.+||+|.+|.+.|..+ ..|..|.+.|.|++||+|..|++.|.
T Consensus       890 te~gmyaCDqCDK~FqKqS-SLaRH------KYEHsGqRPyqC~iCkKAFKHK-HHLtEHkRLHSGEKPfQCdKClKRFS  961 (1007)
T KOG3623|consen  890 TEDGMYACDQCDKAFQKQS-SLARH------KYEHSGQRPYQCIICKKAFKHK-HHLTEHKRLHSGEKPFQCDKCLKRFS  961 (1007)
T ss_pred             CccccchHHHHHHHHHhhH-HHHHh------hhhhcCCCCcccchhhHhhhhh-hhhhhhhhhccCCCcchhhhhhhhcc
Confidence            4466799999999998777 77788      6789999999999999999988 99999999999999999999999999


Q ss_pred             CchHHHHHHH
Q psy3483          83 ERSNVKAHMI   92 (99)
Q Consensus        83 ~~~~l~~H~~   92 (99)
                      .+..+..||-
T Consensus       962 HSGSYSQHMN  971 (1007)
T KOG3623|consen  962 HSGSYSQHMN  971 (1007)
T ss_pred             cccchHhhhc
Confidence            9999999975

>KOG3576|consensus

Probab=99.63  E-value=5.6e-17  Score=90.56  Aligned_cols=85  Identities=27%  Similarity=0.563  Sum_probs=76.5

Q ss_pred             CCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccC
Q psy3483           4 TELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNE   83 (99)
Q Consensus         4 ~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~   83 (99)
                      +...|.|..|+|.|.... +|..|      ++.|..-+.+.|..||+.|-.. -.|..|+++|+|.+||+|..|+++|.+
T Consensus       114 d~d~ftCrvCgK~F~lQR-mlnrh------~kch~~vkr~lct~cgkgfndt-fdlkrh~rthtgvrpykc~~c~kaftq  185 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQR-MLNRH------LKCHSDVKRHLCTFCGKGFNDT-FDLKRHTRTHTGVRPYKCSLCEKAFTQ  185 (267)
T ss_pred             CCCeeeeehhhhhhhHHH-HHHHH------hhhccHHHHHHHhhccCcccch-hhhhhhhccccCccccchhhhhHHHHh
Confidence            455699999999999888 99999      9999998999999999987766 789999999999999999999999999


Q ss_pred             chHHHHHHHHhcC
Q psy3483          84 RSNVKAHMIRRHS   96 (99)
Q Consensus        84 ~~~l~~H~~~~~~   96 (99)
                      +-.|..|++.-+|
T Consensus       186 rcsleshl~kvhg  198 (267)
T KOG3576|consen  186 RCSLESHLKKVHG  198 (267)
T ss_pred             hccHHHHHHHHcC
Confidence            9999999875444

>KOG3623|consensus

Probab=99.46  E-value=1e-14  Score=93.88  Aligned_cols=85  Identities=22%  Similarity=0.536  Sum_probs=70.8

Q ss_pred             ceeeCccccccccccchhhhccchhh---ccC-CC---CCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCC
Q psy3483           6 LIVTCMYCSKILTYETETIMNHCKFC---KAV-SR---PTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCD   78 (99)
Q Consensus         6 ~~~~c~~c~~~f~~~~~~~~~h~~~~---~~~-~~---~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~   78 (99)
                      ..|.|..|..+|.++. .|..|+.+.   +.. ..   -...+.|+|.+||+.|..+ ..|..|+++|.|++||.|+.|+
T Consensus       239 ~nfsC~lCsytFAyRt-QLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKAFKfK-HHLKEHlRIHSGEKPfeCpnCk  316 (1007)
T KOG3623|consen  239 PNFSCMLCSYTFAYRT-QLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKAFKFK-HHLKEHLRIHSGEKPFECPNCK  316 (1007)
T ss_pred             CCCcchhhhhhhhhHH-HHHHHHHhhcCCCcccccccchhhhccccccccchhhhhH-HHHHhhheeecCCCCcCCcccc
Confidence            3488999999999998 899995443   111 11   1234669999999999988 9999999999999999999999


Q ss_pred             ccccCchHHHHHHH
Q psy3483          79 YRSNERSNVKAHMI   92 (99)
Q Consensus        79 ~~f~~~~~l~~H~~   92 (99)
                      +.|..+..+..|+.
T Consensus       317 KRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  317 KRFSHSGSYSSHMS  330 (1007)
T ss_pred             cccccCCccccccc
Confidence            99999999999875

>PHA00733 hypothetical protein

Probab=99.25  E-value=8.3e-12  Score=66.47  Aligned_cols=87  Identities=16%  Similarity=0.291  Sum_probs=66.7

Q ss_pred             CceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCc
Q psy3483           5 ELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNER   84 (99)
Q Consensus         5 ~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~   84 (99)
                      .+++.|..|.+.|.... .|..+..+...+.. .+.++|.|+.|++.|... ..+..|++.+  +.+|.|..|++.|...
T Consensus        38 ~~~~~~~~~~~~~~~~~-~l~~~~~l~~~~~~-~~~kPy~C~~Cgk~Fss~-s~L~~H~r~h--~~~~~C~~CgK~F~~~  112 (128)
T PHA00733         38 QKRLIRAVVKTLIYNPQ-LLDESSYLYKLLTS-KAVSPYVCPLCLMPFSSS-VSLKQHIRYT--EHSKVCPVCGKEFRNT  112 (128)
T ss_pred             hhhHHHHHHhhhccChh-hhcchHHHHhhccc-CCCCCccCCCCCCcCCCH-HHHHHHHhcC--CcCccCCCCCCccCCH
Confidence            56678999998887665 55554222222333 347889999999988877 8899998876  4579999999999999


Q ss_pred             hHHHHHHHHhcC
Q psy3483          85 SNVKAHMIRRHS   96 (99)
Q Consensus        85 ~~l~~H~~~~~~   96 (99)
                      ..|..|+...++
T Consensus       113 ~sL~~H~~~~h~  124 (128)
T PHA00733        113 DSTLDHVCKKHN  124 (128)
T ss_pred             HHHHHHHHHhcC
Confidence            999999887664

>KOG3576|consensus

Probab=99.24  E-value=2.9e-12  Score=71.96  Aligned_cols=88  Identities=24%  Similarity=0.451  Sum_probs=73.5

Q ss_pred             CCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHh-h----------CCCC
Q psy3483           2 KSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRT-H----------TKDR   70 (99)
Q Consensus         2 h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~-~----------~~~~   70 (99)
                      |++.+.+.|..||++|-.-. .|..|      ++.|+|-+||.|..|++.|... -+|..|.+. |          ..++
T Consensus       140 h~~vkr~lct~cgkgfndtf-dlkrh------~rthtgvrpykc~~c~kaftqr-csleshl~kvhgv~~~yaykerr~k  211 (267)
T KOG3576|consen  140 HSDVKRHLCTFCGKGFNDTF-DLKRH------TRTHTGVRPYKCSLCEKAFTQR-CSLESHLKKVHGVQHQYAYKERRAK  211 (267)
T ss_pred             ccHHHHHHHhhccCcccchh-hhhhh------hccccCccccchhhhhHHHHhh-ccHHHHHHHHcCchHHHHHHHhhhh
Confidence            56677889999999999888 99999      9999999999999999977655 788888653 2          2356


Q ss_pred             ceecCCCCccccCchHHHHHHHHhcCC
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMIRRHSV   97 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~~~~~~   97 (99)
                      .|.|..||..-.....+..|+..++..
T Consensus       212 l~vcedcg~t~~~~e~~~~h~~~~hp~  238 (267)
T KOG3576|consen  212 LYVCEDCGYTSERPEVYYLHLKLHHPF  238 (267)
T ss_pred             eeeecccCCCCCChhHHHHHHHhcCCC
Confidence            799999999888888888898877654

>KOG1074|consensus

Probab=99.18  E-value=2.7e-12  Score=83.87  Aligned_cols=83  Identities=14%  Similarity=0.407  Sum_probs=74.2

Q ss_pred             ceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCC----CceecC---CCC
Q psy3483           6 LIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKD----RPYKCF---YCD   78 (99)
Q Consensus         6 ~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~----~~~~C~---~c~   78 (99)
                      .|.+|-.|.+.....+ .|++|      ++.|+|++||+|.+||+.|.++ .+|..|+.+|...    ..+.|+   .|-
T Consensus       604 dPNqCiiC~rVlSC~s-aLqmH------yrtHtGERPFkCKiCgRAFtTk-GNLkaH~~vHka~p~~R~q~ScP~~~ic~  675 (958)
T KOG1074|consen  604 DPNQCIICLRVLSCPS-ALQMH------YRTHTGERPFKCKICGRAFTTK-GNLKAHMSVHKAKPPARVQFSCPSTFICQ  675 (958)
T ss_pred             Cccceeeeeecccchh-hhhhh------hhcccCcCccccccccchhccc-cchhhcccccccCccccccccCCchhhhc
Confidence            3678999999999999 99999      9999999999999999999888 9999999988554    357898   899


Q ss_pred             ccccCchHHHHHHHHhcC
Q psy3483          79 YRSNERSNVKAHMIRRHS   96 (99)
Q Consensus        79 ~~f~~~~~l~~H~~~~~~   96 (99)
                      +.|.+.-.+..|.+.|.+
T Consensus       676 ~kftn~V~lpQhIriH~~  693 (958)
T KOG1074|consen  676 KKFTNAVTLPQHIRIHLG  693 (958)
T ss_pred             ccccccccccceEEeecC
Confidence            999999999999999884

>KOG3608|consensus

Probab=99.17  E-value=7.6e-12  Score=75.34  Aligned_cols=90  Identities=33%  Similarity=0.651  Sum_probs=63.5

Q ss_pred             CCCCceeeCccccccccccchhhhccchh-------------h-----------ccCCCCCCCcceeccCCCcccccChh
Q psy3483           2 KSTELIVTCMYCSKILTYETETIMNHCKF-------------C-----------KAVSRPTKYQRYVCCLCSKYRHSDAS   57 (99)
Q Consensus         2 h~~~~~~~c~~c~~~f~~~~~~~~~h~~~-------------~-----------~~~~~~~~~~~~~c~~c~~~~~~~~~   57 (99)
                      |+++|..-|+.||.-|..+. .|-.|++-             |           +++..|.  ..|.|+.|.-+.... +
T Consensus       202 Hs~eKvvACp~Cg~~F~~~t-kl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHv--n~ykCplCdmtc~~~-s  277 (467)
T KOG3608|consen  202 HSNEKVVACPHCGELFRTKT-KLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHV--NCYKCPLCDMTCSSA-S  277 (467)
T ss_pred             cCCCeEEecchHHHHhcccc-HHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhh--hcccccccccCCCCh-H
Confidence            56666666666666666555 45455111             0           0033332  347899998865555 8


Q ss_pred             HHHHHHHh-hCCCCceecCCCCccccCchHHHHHHHHhc
Q psy3483          58 KMRSHIRT-HTKDRPYKCFYCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        58 ~~~~h~~~-~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~   95 (99)
                      +|..|++. |..++||+|..|+..|...++|..|..+|.
T Consensus       278 sL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS  316 (467)
T KOG3608|consen  278 SLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS  316 (467)
T ss_pred             HHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc
Confidence            89999876 788999999999999999999999998886

>PHA02768 hypothetical protein; Provisional

Probab=99.07  E-value=5.5e-11  Score=53.75  Aligned_cols=43  Identities=23%  Similarity=0.394  Sum_probs=35.7

Q ss_pred             eeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHH
Q psy3483          43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVK   88 (99)
Q Consensus        43 ~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~   88 (99)
                      |.|++||+.|... +.|..|++.|+  ++++|..|++.|...+.|+
T Consensus         6 y~C~~CGK~Fs~~-~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          6 YECPICGEIYIKR-KSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             cCcchhCCeeccH-HHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            6799999977766 88999999988  6889999999888777654

>KOG1074|consensus

Probab=98.98  E-value=2.2e-10  Score=75.23  Aligned_cols=56  Identities=36%  Similarity=0.685  Sum_probs=51.5

Q ss_pred             eeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        43 ~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      ..|.+||+.|.++ +.|..|+++|++++||.|..|++.|..+.+|..||.+|....|
T Consensus       880 h~C~vCgk~FsSS-sALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~  935 (958)
T KOG1074|consen  880 HVCNVCGKQFSSS-AALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHMWVQP  935 (958)
T ss_pred             hhhccchhcccch-HHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhccccccCC
Confidence            4699999988888 9999999999999999999999999999999999999976543

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.96  E-value=8.2e-10  Score=43.03  Aligned_cols=26  Identities=46%  Similarity=1.012  Sum_probs=22.9

Q ss_pred             HHHHHHHhhCCCCceecCCCCccccC
Q psy3483          58 KMRSHIRTHTKDRPYKCFYCDYRSNE   83 (99)
Q Consensus        58 ~~~~h~~~~~~~~~~~C~~c~~~f~~   83 (99)
                      +|..|++.|++++||.|..|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            47789999999999999999998863

...

>PHA00616 hypothetical protein

Probab=98.88  E-value=8.7e-10  Score=47.65  Aligned_cols=29  Identities=21%  Similarity=0.480  Sum_probs=17.4

Q ss_pred             ceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      ||+|..||+.|...++|..|++.++|++|
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~   29 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNK   29 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCc
Confidence            45566666666666666666666665543

>KOG3608|consensus

Probab=98.80  E-value=4.9e-09  Score=63.56  Aligned_cols=86  Identities=23%  Similarity=0.441  Sum_probs=64.4

Q ss_pred             CCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccC--CCcccccChhHHHHHHHh-hCC--CCceecCC
Q psy3483           2 KSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCL--CSKYRHSDASKMRSHIRT-HTK--DRPYKCFY   76 (99)
Q Consensus         2 h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~--c~~~~~~~~~~~~~h~~~-~~~--~~~~~C~~   76 (99)
                      |+.++||+|..|++.+..++ .|..|      ...|. +.-|.|.-  |...+... ..+..|.+- |.|  ..+|.|-.
T Consensus       287 Hs~dkpfKCd~Cd~~c~~es-dL~kH------~~~HS-~~~y~C~h~~C~~s~r~~-~q~~~H~~evhEg~np~~Y~CH~  357 (467)
T KOG3608|consen  287 HSKDKPFKCDECDTRCVRES-DLAKH------VQVHS-KTVYQCEHPDCHYSVRTY-TQMRRHFLEVHEGNNPILYACHC  357 (467)
T ss_pred             hccCCCccccchhhhhccHH-HHHHH------HHhcc-ccceecCCCCCcHHHHHH-HHHHHHHHHhccCCCCCceeeec
Confidence            67788888888888888887 88888      66665 45577766  76655554 677777654 434  45699999


Q ss_pred             CCccccCchHHHHHHHHhcC
Q psy3483          77 CDYRSNERSNVKAHMIRRHS   96 (99)
Q Consensus        77 c~~~f~~~~~l~~H~~~~~~   96 (99)
                      |++.|..-.+|.+|+...++
T Consensus       358 Cdr~ft~G~~L~~HL~kkH~  377 (467)
T KOG3608|consen  358 CDRFFTSGKSLSAHLMKKHG  377 (467)
T ss_pred             chhhhccchhHHHHHHHhhc
Confidence            99999999999999776554

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.78  E-value=1.1e-08  Score=65.89  Aligned_cols=77  Identities=16%  Similarity=0.271  Sum_probs=56.3

Q ss_pred             CceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccC-
Q psy3483           5 ELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNE-   83 (99)
Q Consensus         5 ~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~-   83 (99)
                      ++.+.|+.|++.|. .. .+..|      ...+.  .++.|+ ||. +... ..+..|+..+...+++.|..|+..|.. 
T Consensus       451 ~~H~~C~~Cgk~f~-~s-~LekH------~~~~H--kpv~Cp-Cg~-~~~R-~~L~~H~~thCp~Kpi~C~fC~~~v~~g  517 (567)
T PLN03086        451 KNHVHCEKCGQAFQ-QG-EMEKH------MKVFH--EPLQCP-CGV-VLEK-EQMVQHQASTCPLRLITCRFCGDMVQAG  517 (567)
T ss_pred             ccCccCCCCCCccc-hH-HHHHH------HHhcC--CCccCC-CCC-Ccch-hHHHhhhhccCCCCceeCCCCCCccccC
Confidence            45678889988885 34 67788      44442  667888 886 4444 788888888888889999999888742 


Q ss_pred             ---------chHHHHHHHHh
Q psy3483          84 ---------RSNVKAHMIRR   94 (99)
Q Consensus        84 ---------~~~l~~H~~~~   94 (99)
                               ...|..|+...
T Consensus       518 ~~~~d~~d~~s~Lt~HE~~C  537 (567)
T PLN03086        518 GSAMDVRDRLRGMSEHESIC  537 (567)
T ss_pred             ccccchhhhhhhHHHHHHhc
Confidence                     24677887764

>PHA02768 hypothetical protein; Provisional

Probab=98.71  E-value=2.3e-09  Score=48.55  Aligned_cols=40  Identities=13%  Similarity=0.333  Sum_probs=34.6

Q ss_pred             eeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccC
Q psy3483           7 IVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSD   55 (99)
Q Consensus         7 ~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~   55 (99)
                      .|.|+.||+.|...+ .|..|      ++.|+  +++.|..|++.|...
T Consensus         5 ~y~C~~CGK~Fs~~~-~L~~H------~r~H~--k~~kc~~C~k~f~~~   44 (55)
T PHA02768          5 GYECPICGEIYIKRK-SMITH------LRKHN--TNLKLSNCKRISLRT   44 (55)
T ss_pred             ccCcchhCCeeccHH-HHHHH------HHhcC--CcccCCcccceeccc
Confidence            489999999999999 99999      88888  678899999966543

>PHA00733 hypothetical protein

Probab=98.48  E-value=1.5e-07  Score=50.23  Aligned_cols=54  Identities=15%  Similarity=0.288  Sum_probs=43.5

Q ss_pred             CCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhh
Q psy3483           3 STELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTH   66 (99)
Q Consensus         3 ~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~   66 (99)
                      .+++||.|+.|++.|.... .|..|      +..+  ..++.|.+|++.|... ..|..|+.-.
T Consensus        69 ~~~kPy~C~~Cgk~Fss~s-~L~~H------~r~h--~~~~~C~~CgK~F~~~-~sL~~H~~~~  122 (128)
T PHA00733         69 KAVSPYVCPLCLMPFSSSV-SLKQH------IRYT--EHSKVCPVCGKEFRNT-DSTLDHVCKK  122 (128)
T ss_pred             CCCCCccCCCCCCcCCCHH-HHHHH------HhcC--CcCccCCCCCCccCCH-HHHHHHHHHh
Confidence            3578999999999999998 88888      5544  3468999999987776 8888887654

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.44  E-value=5e-07  Score=58.47  Aligned_cols=77  Identities=17%  Similarity=0.343  Sum_probs=60.8

Q ss_pred             ceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCccccc---------ChhHHHHHHHhhCCCCceecCC
Q psy3483           6 LIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHS---------DASKMRSHIRTHTKDRPYKCFY   76 (99)
Q Consensus         6 ~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~---------~~~~~~~h~~~~~~~~~~~C~~   76 (99)
                      +++.|+ |++.+ .+. .|..|      ...+...+++.|..|+..+..         ....+..|.... +.+++.|..
T Consensus       477 kpv~Cp-Cg~~~-~R~-~L~~H------~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~  546 (567)
T PLN03086        477 EPLQCP-CGVVL-EKE-QMVQH------QASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDS  546 (567)
T ss_pred             CCccCC-CCCCc-chh-HHHhh------hhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEccc
Confidence            678999 99765 445 88889      888999999999999986531         124788888885 999999999


Q ss_pred             CCccccCchHHHHHHHH
Q psy3483          77 CDYRSNERSNVKAHMIR   93 (99)
Q Consensus        77 c~~~f~~~~~l~~H~~~   93 (99)
                      |++.+..+ .+..|+..
T Consensus       547 Cgk~Vrlr-dm~~H~~~  562 (567)
T PLN03086        547 CGRSVMLK-EMDIHQIA  562 (567)
T ss_pred             cCCeeeeh-hHHHHHHH
Confidence            99987665 67777654

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.38  E-value=6.1e-08  Score=37.65  Aligned_cols=18  Identities=28%  Similarity=0.593  Sum_probs=15.2

Q ss_pred             CCCCCceeeCcccccccc
Q psy3483           1 MKSTELIVTCMYCSKILT   18 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~   18 (99)
                      +|+|++||+|+.|++.|.
T Consensus         8 ~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    8 THTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHSSSSSEEESSSSEEES
T ss_pred             hcCCCCCCCCCCCcCeeC
Confidence            478899999999998885

...

>PHA00616 hypothetical protein

Probab=98.36  E-value=1.7e-07  Score=40.55  Aligned_cols=32  Identities=16%  Similarity=0.285  Sum_probs=18.1

Q ss_pred             eeccCCCcccccChhHHHHHHHhhCCCCceecC
Q psy3483          43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCF   75 (99)
Q Consensus        43 ~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~   75 (99)
                      |+|+.||+.|... +.+..|++.+++++++.|.
T Consensus         2 YqC~~CG~~F~~~-s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          2 YQCLRCGGIFRKK-KEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CccchhhHHHhhH-HHHHHHHHHhcCCCcccee
Confidence            4556666555544 5566666666666555544

>PHA00732 hypothetical protein

Probab=98.35  E-value=4.1e-07  Score=44.61  Aligned_cols=44  Identities=20%  Similarity=0.409  Sum_probs=30.6

Q ss_pred             eeeCccccccccccchhhhccchhhccCCC-CCCCcceeccCCCcccccChhHHHHHHH
Q psy3483           7 IVTCMYCSKILTYETETIMNHCKFCKAVSR-PTKYQRYVCCLCSKYRHSDASKMRSHIR   64 (99)
Q Consensus         7 ~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~-~~~~~~~~c~~c~~~~~~~~~~~~~h~~   64 (99)
                      ||.|..|++.|.... .|..|      ++. |.+   +.|+.|++.|.    .+..|..
T Consensus         1 py~C~~Cgk~F~s~s-~Lk~H------~r~~H~~---~~C~~CgKsF~----~l~~H~~   45 (79)
T PHA00732          1 MFKCPICGFTTVTLF-ALKQH------ARRNHTL---TKCPVCNKSYR----RLNQHFY   45 (79)
T ss_pred             CccCCCCCCccCCHH-HHHHH------hhcccCC---CccCCCCCEeC----Chhhhhc
Confidence            578888888888887 88888      653 443   46888888654    2455553

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.27  E-value=9e-07  Score=33.20  Aligned_cols=23  Identities=43%  Similarity=0.752  Sum_probs=19.4

Q ss_pred             eecCCCCccccCchHHHHHHHHh
Q psy3483          72 YKCFYCDYRSNERSNVKAHMIRR   94 (99)
Q Consensus        72 ~~C~~c~~~f~~~~~l~~H~~~~   94 (99)
                      |.|..|++.|.....|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            67888999999999998888764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>KOG3993|consensus

Probab=98.09  E-value=8.3e-07  Score=55.19  Aligned_cols=25  Identities=12%  Similarity=0.493  Sum_probs=23.0

Q ss_pred             ceecCCCCccccCchHHHHHHHHhc
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~~~~   95 (99)
                      .|.|..|++.|.....|..|+.+|.
T Consensus       356 i~~C~~C~KkFrRqAYLrKHqlthq  380 (500)
T KOG3993|consen  356 IFSCHTCGKKFRRQAYLRKHQLTHQ  380 (500)
T ss_pred             eeecHHhhhhhHHHHHHHHhHHhhh
Confidence            6999999999999999999988875

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.08  E-value=2.6e-06  Score=33.18  Aligned_cols=26  Identities=23%  Similarity=0.430  Sum_probs=21.8

Q ss_pred             ceecCCCCccccCchHHHHHHHHhcC
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMIRRHS   96 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~~~~~   96 (99)
                      ||.|..|++.|.....|..|++.|.+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            58899999999999999999887753

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.00  E-value=8.3e-06  Score=30.53  Aligned_cols=24  Identities=25%  Similarity=0.625  Sum_probs=18.2

Q ss_pred             eecCCCCccccCchHHHHHHHHhc
Q psy3483          72 YKCFYCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        72 ~~C~~c~~~f~~~~~l~~H~~~~~   95 (99)
                      |.|..|+..|.....|..|+.+++
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            678888888888888888888763

...

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.97  E-value=1.2e-05  Score=35.65  Aligned_cols=33  Identities=27%  Similarity=0.530  Sum_probs=22.3

Q ss_pred             CCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          67 TKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        67 ~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      .++.|-.|++|+..+.+..+|.+|+...++.||
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            456788888888888888888888888877776

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.93  E-value=3.6e-05  Score=35.03  Aligned_cols=49  Identities=27%  Similarity=0.575  Sum_probs=27.4

Q ss_pred             eeccCCCcccccChhHHHHHHHh-hCC-CCceecCCCCccccCchHHHHHHHHhc
Q psy3483          43 YVCCLCSKYRHSDASKMRSHIRT-HTK-DRPYKCFYCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        43 ~~c~~c~~~~~~~~~~~~~h~~~-~~~-~~~~~C~~c~~~f~~~~~l~~H~~~~~   95 (99)
                      |.|+.|++ .+.. ..|..|... |.. .+.+.|+.|...+.  .+|..|+..++
T Consensus         3 f~CP~C~~-~~~~-~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    3 FTCPYCGK-GFSE-SSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             cCCCCCCC-ccCH-HHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            55666666 4444 556666443 333 23566777765433  36666766544

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00732 hypothetical protein

Probab=97.80  E-value=1.2e-05  Score=39.49  Aligned_cols=47  Identities=21%  Similarity=0.424  Sum_probs=37.5

Q ss_pred             ceeccCCCcccccChhHHHHHHHh-hCCCCceecCCCCccccCchHHHHHHHHhc
Q psy3483          42 RYVCCLCSKYRHSDASKMRSHIRT-HTKDRPYKCFYCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        42 ~~~c~~c~~~~~~~~~~~~~h~~~-~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~   95 (99)
                      ||.|..|++.|... ..+..|++. |.   ++.|..|++.|.   .+..|.++..
T Consensus         1 py~C~~Cgk~F~s~-s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICGFTTVTL-FALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CccCCCCCCccCCH-HHHHHHhhcccC---CCccCCCCCEeC---ChhhhhcccC
Confidence            47899999988777 999999984 65   368999999997   4777776543

>KOG3993|consensus

Probab=97.60  E-value=2.7e-05  Score=48.76  Aligned_cols=60  Identities=22%  Similarity=0.471  Sum_probs=44.7

Q ss_pred             ceeeCccccccccccchhhhccchhhccC------CCC---------------------CCCcceeccCCCcccccChhH
Q psy3483           6 LIVTCMYCSKILTYETETIMNHCKFCKAV------SRP---------------------TKYQRYVCCLCSKYRHSDASK   58 (99)
Q Consensus         6 ~~~~c~~c~~~f~~~~~~~~~h~~~~~~~------~~~---------------------~~~~~~~c~~c~~~~~~~~~~   58 (99)
                      ..|.|++|+|.|.... +|-.|.+|....      ...                     ..+..|.|.+|++.|..+ .-
T Consensus       294 vEYrCPEC~KVFsCPA-NLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRq-AY  371 (500)
T KOG3993|consen  294 VEYRCPECDKVFSCPA-NLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQ-AY  371 (500)
T ss_pred             eeecCCcccccccCch-hhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHH-HH
Confidence            3589999999999998 999998875110      000                     112358999999999888 78


Q ss_pred             HHHHHHhhC
Q psy3483          59 MRSHIRTHT   67 (99)
Q Consensus        59 ~~~h~~~~~   67 (99)
                      |..|+.+|.
T Consensus       372 LrKHqlthq  380 (500)
T KOG3993|consen  372 LRKHQLTHQ  380 (500)
T ss_pred             HHHhHHhhh
Confidence            889987763

>smart00355 ZnF_C2H2 zinc finger

Probab=97.59  E-value=8.6e-05  Score=28.02  Aligned_cols=24  Identities=29%  Similarity=0.533  Sum_probs=19.0

Q ss_pred             eecCCCCccccCchHHHHHHHHhc
Q psy3483          72 YKCFYCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        72 ~~C~~c~~~f~~~~~l~~H~~~~~   95 (99)
                      |.|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            468888888888888888887654

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.57  E-value=6e-05  Score=28.02  Aligned_cols=20  Identities=35%  Similarity=0.725  Sum_probs=9.9

Q ss_pred             eccCCCcccccChhHHHHHHH
Q psy3483          44 VCCLCSKYRHSDASKMRSHIR   64 (99)
Q Consensus        44 ~c~~c~~~~~~~~~~~~~h~~   64 (99)
                      .|+.|++.|... ..|..|++
T Consensus         2 ~C~~C~~~f~~~-~~l~~H~~   21 (23)
T PF00096_consen    2 KCPICGKSFSSK-SNLKRHMR   21 (23)
T ss_dssp             EETTTTEEESSH-HHHHHHHH
T ss_pred             CCCCCCCccCCH-HHHHHHHh
Confidence            455555544444 55555544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.55  E-value=7.3e-05  Score=34.03  Aligned_cols=50  Identities=26%  Similarity=0.640  Sum_probs=33.9

Q ss_pred             eeeCccccccccccchhhhccchhhccCCCCCCC-cceeccCCCcccccChhHHHHHHHhh
Q psy3483           7 IVTCMYCSKILTYETETIMNHCKFCKAVSRPTKY-QRYVCCLCSKYRHSDASKMRSHIRTH   66 (99)
Q Consensus         7 ~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~-~~~~c~~c~~~~~~~~~~~~~h~~~~   66 (99)
                      .|.|++|++.|. .. .|..|+     ...|..+ +.+.|++|...  .. ..+..|+..+
T Consensus         2 ~f~CP~C~~~~~-~~-~L~~H~-----~~~H~~~~~~v~CPiC~~~--~~-~~l~~Hl~~~   52 (54)
T PF05605_consen    2 SFTCPYCGKGFS-ES-SLVEHC-----EDEHRSESKNVVCPICSSR--VT-DNLIRHLNSQ   52 (54)
T ss_pred             CcCCCCCCCccC-HH-HHHHHH-----HhHCcCCCCCccCCCchhh--hh-hHHHHHHHHh
Confidence            589999999655 34 677774     3344433 45889999873  23 5778887654

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.41  E-value=0.00017  Score=36.50  Aligned_cols=73  Identities=14%  Similarity=0.429  Sum_probs=21.2

Q ss_pred             eCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHH
Q psy3483           9 TCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVK   88 (99)
Q Consensus         9 ~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~   88 (99)
                      +|..|+..|.... .+..|      +....+-..   ..... .... ..+..+... .....+.|..|+..|.....|.
T Consensus         1 ~C~~C~~~f~~~~-~l~~H------~~~~H~~~~---~~~~~-l~~~-~~~~~~~~~-~~~~~~~C~~C~~~f~s~~~l~   67 (100)
T PF12756_consen    1 QCLFCDESFSSVD-DLLQH------MKKKHGFDI---PDQKY-LVDP-NRLLNYLRK-KVKESFRCPYCNKTFRSREALQ   67 (100)
T ss_dssp             -------------------------------------------------------------SSEEBSSSS-EESSHHHHH
T ss_pred             Ccccccccccccc-ccccc------ccccccccc---ccccc-cccc-ccccccccc-ccCCCCCCCccCCCCcCHHHHH
Confidence            5889999998877 78888      533222110   00000 1111 222222221 1223699999999999999999


Q ss_pred             HHHHHh
Q psy3483          89 AHMIRR   94 (99)
Q Consensus        89 ~H~~~~   94 (99)
                      .|++.+
T Consensus        68 ~Hm~~~   73 (100)
T PF12756_consen   68 EHMRSK   73 (100)
T ss_dssp             HHHHHT
T ss_pred             HHHcCc
Confidence            999865

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.32  E-value=0.00014  Score=44.20  Aligned_cols=70  Identities=20%  Similarity=0.243  Sum_probs=40.4

Q ss_pred             CceeeCc--cccccccccchhhhccchhhc-cCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccc
Q psy3483           5 ELIVTCM--YCSKILTYETETIMNHCKFCK-AVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRS   81 (99)
Q Consensus         5 ~~~~~c~--~c~~~f~~~~~~~~~h~~~~~-~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f   81 (99)
                      ++||+|+  .|.|.++..- .|..|+..+. ....|  +.|  -++--..|             -...+||.|.+|++.+
T Consensus       347 ~KpykCpV~gC~K~Yknqn-GLKYH~lhGH~~~~~~--~~p--~p~~~~~F-------------~~~~KPYrCevC~KRY  408 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQN-GLKYHMLHGHQNQKLH--ENP--SPEKMNIF-------------SAKDKPYRCEVCDKRY  408 (423)
T ss_pred             CceecCCCCCchhhhcccc-chhhhhhccccCcccC--CCC--Cccccccc-------------cccCCceeccccchhh
Confidence            4788884  4777777666 6777732211 01111  111  11111112             2347899999999999


Q ss_pred             cCchHHHHHHH
Q psy3483          82 NERSNVKAHMI   92 (99)
Q Consensus        82 ~~~~~l~~H~~   92 (99)
                      .+..-|.-|+.
T Consensus       409 KNlNGLKYHr~  419 (423)
T COG5189         409 KNLNGLKYHRK  419 (423)
T ss_pred             ccCccceeccc
Confidence            88888877654

>PRK04860 hypothetical protein; Provisional

Probab=97.25  E-value=0.00033  Score=38.96  Aligned_cols=40  Identities=23%  Similarity=0.453  Sum_probs=33.1

Q ss_pred             cceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCch
Q psy3483          41 QRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERS   85 (99)
Q Consensus        41 ~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~   85 (99)
                      -+|.|. |+.   .. ..+..|.++++++++|.|..|+..|....
T Consensus       118 ~~Y~C~-C~~---~~-~~~rrH~ri~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK-CQE---HQ-LTVRRHNRVVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEEcC-CCC---ee-CHHHHHHHHhcCCccEECCCCCceeEEec
Confidence            368997 986   33 67899999999999999999999876543

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.22  E-value=0.0001  Score=28.50  Aligned_cols=20  Identities=20%  Similarity=0.444  Sum_probs=10.7

Q ss_pred             eeeCccccccccccchhhhcc
Q psy3483           7 IVTCMYCSKILTYETETIMNH   27 (99)
Q Consensus         7 ~~~c~~c~~~f~~~~~~~~~h   27 (99)
                      ||+|..|++.|.... .|..|
T Consensus         1 ~~~C~~C~~~F~~~~-~l~~H   20 (27)
T PF13912_consen    1 PFECDECGKTFSSLS-ALREH   20 (27)
T ss_dssp             SEEETTTTEEESSHH-HHHHH
T ss_pred             CCCCCccCCccCChh-HHHHH
Confidence            345555555555555 55555

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.12  E-value=0.00065  Score=25.44  Aligned_cols=23  Identities=48%  Similarity=1.008  Sum_probs=16.0

Q ss_pred             eecCCCCccccCchHHHHHHHHhc
Q psy3483          72 YKCFYCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        72 ~~C~~c~~~f~~~~~l~~H~~~~~   95 (99)
                      |.|..|+.... ...|..|++.++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            67888887776 778888887764

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.12  E-value=0.0004  Score=26.24  Aligned_cols=23  Identities=13%  Similarity=0.499  Sum_probs=18.8

Q ss_pred             eecCCCCccccCchHHHHHHHHh
Q psy3483          72 YKCFYCDYRSNERSNVKAHMIRR   94 (99)
Q Consensus        72 ~~C~~c~~~f~~~~~l~~H~~~~   94 (99)
                      |.|..|+..|.....+..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            57888888888888888887654

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.03  E-value=0.00061  Score=25.14  Aligned_cols=22  Identities=41%  Similarity=0.831  Sum_probs=11.0

Q ss_pred             eeccCCCcccccChhHHHHHHHh
Q psy3483          43 YVCCLCSKYRHSDASKMRSHIRT   65 (99)
Q Consensus        43 ~~c~~c~~~~~~~~~~~~~h~~~   65 (99)
                      |.|+.|+..|... ..+..|+..
T Consensus         1 ~~C~~C~~~~~~~-~~l~~H~~~   22 (24)
T PF13894_consen    1 FQCPICGKSFRSK-SELRQHMRT   22 (24)
T ss_dssp             EE-SSTS-EESSH-HHHHHHHHH
T ss_pred             CCCcCCCCcCCcH-HHHHHHHHh
Confidence            3466666655544 556666554

...

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.61  E-value=0.00044  Score=26.77  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=17.6

Q ss_pred             eecCCCCccccCchHHHHHHHH
Q psy3483          72 YKCFYCDYRSNERSNVKAHMIR   93 (99)
Q Consensus        72 ~~C~~c~~~f~~~~~l~~H~~~   93 (99)
                      |.|..|++.|.....+..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6788888888888888877654

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.32  E-value=0.0083  Score=26.81  Aligned_cols=34  Identities=18%  Similarity=0.415  Sum_probs=21.5

Q ss_pred             CCCCcceeccCCCcccccChhHHHHHHHhhCCCCc
Q psy3483          37 PTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRP   71 (99)
Q Consensus        37 ~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~   71 (99)
                      ...++|..|++|+...... .+|..|+....+.+|
T Consensus        19 ~~S~~PatCP~C~a~~~~s-rnLrRHle~~H~~k~   52 (54)
T PF09237_consen   19 SQSEQPATCPICGAVIRQS-RNLRRHLEIRHFKKP   52 (54)
T ss_dssp             CTTS--EE-TTT--EESSH-HHHHHHHHHHTTTS-
T ss_pred             hccCCCCCCCcchhhccch-hhHHHHHHHHhcccC
Confidence            3456788999999976665 899999987766655

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PRK04860 hypothetical protein; Provisional

Probab=95.99  E-value=0.0034  Score=35.00  Aligned_cols=36  Identities=19%  Similarity=0.325  Sum_probs=29.0

Q ss_pred             eeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccc
Q psy3483           7 IVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRH   53 (99)
Q Consensus         7 ~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~   53 (99)
                      +|.|. |+.   ... .+..|      .+.++++++|.|..|+..+.
T Consensus       119 ~Y~C~-C~~---~~~-~~rrH------~ri~~g~~~YrC~~C~~~l~  154 (160)
T PRK04860        119 PYRCK-CQE---HQL-TVRRH------NRVVRGEAVYRCRRCGETLV  154 (160)
T ss_pred             EEEcC-CCC---eeC-HHHHH------HHHhcCCccEECCCCCceeE
Confidence            68897 988   333 66788      88899999999999998654

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.61  E-value=0.015  Score=22.04  Aligned_cols=18  Identities=17%  Similarity=0.436  Sum_probs=9.1

Q ss_pred             ecCCCCccccCchHHHHHH
Q psy3483          73 KCFYCDYRSNERSNVKAHM   91 (99)
Q Consensus        73 ~C~~c~~~f~~~~~l~~H~   91 (99)
                      .|+.||+.| ....|..|+
T Consensus         4 ~C~~CgR~F-~~~~l~~H~   21 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHE   21 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHH
Confidence            455555555 333444554

>smart00451 ZnF_U1 U1-like zinc finger

Probab=95.09  E-value=0.024  Score=22.95  Aligned_cols=23  Identities=22%  Similarity=0.502  Sum_probs=17.4

Q ss_pred             ceecCCCCccccCchHHHHHHHH
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMIR   93 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~~   93 (99)
                      +|.|..|+..|.....+..|+..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            47788888888877777777653

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=94.22  E-value=0.027  Score=25.63  Aligned_cols=27  Identities=15%  Similarity=0.282  Sum_probs=18.6

Q ss_pred             hCCCCceecCCCCccccCchHHHHHHH
Q psy3483          66 HTKDRPYKCFYCDYRSNERSNVKAHMI   92 (99)
Q Consensus        66 ~~~~~~~~C~~c~~~f~~~~~l~~H~~   92 (99)
                      ..|+.-+.|+.|+..|....++.+|.-
T Consensus        12 RDGE~~lrCPRC~~~FR~~K~Y~RHVN   38 (65)
T COG4049          12 RDGEEFLRCPRCGMVFRRRKDYIRHVN   38 (65)
T ss_pred             cCCceeeeCCchhHHHHHhHHHHHHhh
Confidence            345666777777777777777777754

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=94.00  E-value=0.062  Score=21.75  Aligned_cols=24  Identities=29%  Similarity=0.837  Sum_probs=14.8

Q ss_pred             eeccCCCcccccChhHHHHHHHhhCCCCceecCCCCc
Q psy3483          43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDY   79 (99)
Q Consensus        43 ~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~   79 (99)
                      |.|.+||..+...             ..++.|+.|+.
T Consensus         2 ~~C~~CGy~y~~~-------------~~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGE-------------EAPWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCC-------------cCCCcCcCCCC
Confidence            5677777643322             25778888764

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=93.84  E-value=0.052  Score=31.76  Aligned_cols=17  Identities=24%  Similarity=0.510  Sum_probs=14.2

Q ss_pred             CceeeCccccccccccc
Q psy3483           5 ELIVTCMYCSKILTYET   21 (99)
Q Consensus         5 ~~~~~c~~c~~~f~~~~   21 (99)
                      ++...||+|++.|..+.
T Consensus         3 ~k~~~CPvC~~~F~~~~   19 (214)
T PF09986_consen    3 DKKITCPVCGKEFKTKK   19 (214)
T ss_pred             CCceECCCCCCeeeeeE
Confidence            46679999999998775

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=93.46  E-value=0.055  Score=28.26  Aligned_cols=28  Identities=21%  Similarity=0.418  Sum_probs=18.5

Q ss_pred             eCccccccccccchhhhccchhhccCCCCCCCcceeccCCCccccc
Q psy3483           9 TCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHS   54 (99)
Q Consensus         9 ~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~   54 (99)
                      .|+.||+.|.    .|..              .|..|+.||..|..
T Consensus        11 ~Cp~CG~kFY----DLnk--------------~PivCP~CG~~~~~   38 (108)
T PF09538_consen   11 TCPSCGAKFY----DLNK--------------DPIVCPKCGTEFPP   38 (108)
T ss_pred             cCCCCcchhc----cCCC--------------CCccCCCCCCccCc
Confidence            6888888877    2222              35678888875543

The function of members of this family is unknown.

>KOG1146|consensus

Probab=93.36  E-value=0.036  Score=40.03  Aligned_cols=26  Identities=27%  Similarity=0.751  Sum_probs=22.1

Q ss_pred             CCCceecCCCCccccCchHHHHHHHH
Q psy3483          68 KDRPYKCFYCDYRSNERSNVKAHMIR   93 (99)
Q Consensus        68 ~~~~~~C~~c~~~f~~~~~l~~H~~~   93 (99)
                      +.++|.|..|...+....+|.+|+..
T Consensus       515 ~~~p~~C~~C~~stttng~LsihlqS  540 (1406)
T KOG1146|consen  515 PGKPYPCRACNYSTTTNGNLSIHLQS  540 (1406)
T ss_pred             CCCcccceeeeeeeecchHHHHHHHH
Confidence            45689999999999999999999764

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=92.95  E-value=0.054  Score=25.00  Aligned_cols=31  Identities=19%  Similarity=0.620  Sum_probs=16.2

Q ss_pred             eeccCCCcccccChhHHHHHHHhhCCCCceecCCCCc
Q psy3483          43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDY   79 (99)
Q Consensus        43 ~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~   79 (99)
                      |.|+.||...... .     .+...-..+|.|+.||.
T Consensus        28 F~CPnCGe~~I~R-c-----~~CRk~g~~Y~Cp~CGF   58 (61)
T COG2888          28 FPCPNCGEVEIYR-C-----AKCRKLGNPYRCPKCGF   58 (61)
T ss_pred             eeCCCCCceeeeh-h-----hhHHHcCCceECCCcCc
Confidence            6778887532222 1     11122245788888873

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=91.90  E-value=0.035  Score=34.89  Aligned_cols=55  Identities=20%  Similarity=0.446  Sum_probs=40.5

Q ss_pred             ceeccCCCcccccChhHHHHHHH--hhCCC--CceecC--CCCccccCchHHHHHHHHhcCC
Q psy3483          42 RYVCCLCSKYRHSDASKMRSHIR--THTKD--RPYKCF--YCDYRSNERSNVKAHMIRRHSV   97 (99)
Q Consensus        42 ~~~c~~c~~~~~~~~~~~~~h~~--~~~~~--~~~~C~--~c~~~f~~~~~l~~H~~~~~~~   97 (99)
                      ++.|..|...+... ..+..|..  .|+++  +++.|+  .|++.|.....+..|...|++.
T Consensus       289 ~~~~~~~~~~~s~~-~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  349 (467)
T COG5048         289 PIKSKQCNISFSRS-SPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSI  349 (467)
T ss_pred             CCCCccccCCcccc-ccccccccccccccccCCceeeeccCCCccccccccccCCcccccCC
Confidence            45667777766665 77777777  68888  788888  6888888888877777777654

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=91.83  E-value=0.18  Score=20.54  Aligned_cols=10  Identities=40%  Similarity=0.796  Sum_probs=5.8

Q ss_pred             CceecCCCCc
Q psy3483          70 RPYKCFYCDY   79 (99)
Q Consensus        70 ~~~~C~~c~~   79 (99)
                      .|..|+.|+.
T Consensus        17 ~p~~CP~Cg~   26 (34)
T cd00729          17 APEKCPICGA   26 (34)
T ss_pred             CCCcCcCCCC
Confidence            3556666653

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=90.54  E-value=0.25  Score=20.46  Aligned_cols=13  Identities=15%  Similarity=0.501  Sum_probs=7.4

Q ss_pred             eeCcccccccccc
Q psy3483           8 VTCMYCSKILTYE   20 (99)
Q Consensus         8 ~~c~~c~~~f~~~   20 (99)
                      ..|+.|+..|.-.
T Consensus         3 ~~CP~C~~~~~v~   15 (38)
T TIGR02098         3 IQCPNCKTSFRVV   15 (38)
T ss_pred             EECCCCCCEEEeC
Confidence            4566666665533

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=90.52  E-value=0.2  Score=27.99  Aligned_cols=13  Identities=15%  Similarity=0.329  Sum_probs=6.5

Q ss_pred             eeCcccccccccc
Q psy3483           8 VTCMYCSKILTYE   20 (99)
Q Consensus         8 ~~c~~c~~~f~~~   20 (99)
                      |.|+.|+..|...
T Consensus       110 Y~Cp~c~~r~tf~  122 (158)
T TIGR00373       110 FICPNMCVRFTFN  122 (158)
T ss_pred             EECCCCCcEeeHH
Confidence            4555555554443

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=90.50  E-value=0.29  Score=20.21  Aligned_cols=12  Identities=25%  Similarity=0.592  Sum_probs=6.7

Q ss_pred             eCcccccccccc
Q psy3483           9 TCMYCSKILTYE   20 (99)
Q Consensus         9 ~c~~c~~~f~~~   20 (99)
                      .|+.|+..|.-.
T Consensus         4 ~Cp~C~~~y~i~   15 (36)
T PF13717_consen    4 TCPNCQAKYEID   15 (36)
T ss_pred             ECCCCCCEEeCC
Confidence            466666665433

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=90.41  E-value=0.25  Score=20.53  Aligned_cols=11  Identities=27%  Similarity=0.615  Sum_probs=5.6

Q ss_pred             eCccccccccc
Q psy3483           9 TCMYCSKILTY   19 (99)
Q Consensus         9 ~c~~c~~~f~~   19 (99)
                      .|+.|+..|.-
T Consensus         4 ~CP~C~~~f~v   14 (37)
T PF13719_consen    4 TCPNCQTRFRV   14 (37)
T ss_pred             ECCCCCceEEc
Confidence            45555555543

>PHA00626 hypothetical protein

Probab=90.15  E-value=0.092  Score=23.94  Aligned_cols=12  Identities=33%  Similarity=0.955  Sum_probs=6.1

Q ss_pred             ceecCCCCcccc
Q psy3483          71 PYKCFYCDYRSN   82 (99)
Q Consensus        71 ~~~C~~c~~~f~   82 (99)
                      .|.|..|+..|+
T Consensus        23 rYkCkdCGY~ft   34 (59)
T PHA00626         23 DYVCCDCGYNDS   34 (59)
T ss_pred             ceEcCCCCCeec
Confidence            455555555443

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=90.08  E-value=0.19  Score=23.25  Aligned_cols=32  Identities=19%  Similarity=0.672  Sum_probs=16.6

Q ss_pred             ceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCc
Q psy3483          42 RYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDY   79 (99)
Q Consensus        42 ~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~   79 (99)
                      .|.|+.||...... -.     +-..-..+|.|+.||.
T Consensus        25 ~F~CPnCG~~~I~R-C~-----~CRk~~~~Y~CP~CGF   56 (59)
T PRK14890         25 KFLCPNCGEVIIYR-CE-----KCRKQSNPYTCPKCGF   56 (59)
T ss_pred             EeeCCCCCCeeEee-ch-----hHHhcCCceECCCCCC
Confidence            36777777641111 10     1112245788888874

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=90.04  E-value=0.22  Score=28.35  Aligned_cols=15  Identities=20%  Similarity=0.569  Sum_probs=8.6

Q ss_pred             eeeCccccccccccc
Q psy3483           7 IVTCMYCSKILTYET   21 (99)
Q Consensus         7 ~~~c~~c~~~f~~~~   21 (99)
                      -|.|+.|+..|....
T Consensus       117 ~Y~Cp~C~~rytf~e  131 (178)
T PRK06266        117 FFFCPNCHIRFTFDE  131 (178)
T ss_pred             EEECCCCCcEEeHHH
Confidence            456666666655443

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=89.04  E-value=0.17  Score=21.66  Aligned_cols=11  Identities=18%  Similarity=0.522  Sum_probs=6.8

Q ss_pred             eeCcccccccc
Q psy3483           8 VTCMYCSKILT   18 (99)
Q Consensus         8 ~~c~~c~~~f~   18 (99)
                      |.|..||..|.
T Consensus         6 y~C~~Cg~~fe   16 (42)
T PF09723_consen    6 YRCEECGHEFE   16 (42)
T ss_pred             EEeCCCCCEEE
Confidence            56666666654

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=88.98  E-value=0.21  Score=31.43  Aligned_cols=61  Identities=20%  Similarity=0.363  Sum_probs=47.8

Q ss_pred             eeeCccccccccccchhhhccchhhccCC--CCCCC--cceecc--CCCcccccChhHHHHHHHhhCCCCceecC
Q psy3483           7 IVTCMYCSKILTYETETIMNHCKFCKAVS--RPTKY--QRYVCC--LCSKYRHSDASKMRSHIRTHTKDRPYKCF   75 (99)
Q Consensus         7 ~~~c~~c~~~f~~~~~~~~~h~~~~~~~~--~~~~~--~~~~c~--~c~~~~~~~~~~~~~h~~~~~~~~~~~C~   75 (99)
                      ++.|..|...|.... .+..|      ..  .|.++  +++.|+  .|++.+... ..+..|...+++..++.+.
T Consensus       289 ~~~~~~~~~~~s~~~-~l~~~------~~~~~h~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  355 (467)
T COG5048         289 PIKSKQCNISFSRSS-PLTRH------LRSVNHSGESLKPFSCPYSLCGKLFSRN-DALKRHILLHTSISPAKEK  355 (467)
T ss_pred             CCCCccccCCccccc-ccccc------ccccccccccCCceeeeccCCCcccccc-ccccCCcccccCCCccccc
Confidence            567888888888887 88888      77  68888  888888  788876666 7778888888877766654

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=88.92  E-value=0.37  Score=27.19  Aligned_cols=23  Identities=30%  Similarity=0.758  Sum_probs=18.6

Q ss_pred             ceeccCCCcccccChhHHHHHHHhhCCCCceecCCCC
Q psy3483          42 RYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCD   78 (99)
Q Consensus        42 ~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~   78 (99)
                      .|.|++||..              +.++-|..|+.||
T Consensus       134 ~~vC~vCGy~--------------~~ge~P~~CPiCg  156 (166)
T COG1592         134 VWVCPVCGYT--------------HEGEAPEVCPICG  156 (166)
T ss_pred             EEEcCCCCCc--------------ccCCCCCcCCCCC
Confidence            6899999873              3457799999998

>KOG2186|consensus

Probab=88.56  E-value=0.47  Score=28.54  Aligned_cols=56  Identities=20%  Similarity=0.453  Sum_probs=35.4

Q ss_pred             eeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCcee
Q psy3483           7 IVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYK   73 (99)
Q Consensus         7 ~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~   73 (99)
                      -|.|..||-...-.  .+..|+.-|      ++ ..|.|..|++.|..  ....+|...-+....|.
T Consensus         3 ~FtCnvCgEsvKKp--~vekH~srC------rn-~~fSCIDC~k~F~~--~sYknH~kCITEaQKYg   58 (276)
T KOG2186|consen    3 FFTCNVCGESVKKP--QVEKHMSRC------RN-AYFSCIDCGKTFER--VSYKNHTKCITEAQKYG   58 (276)
T ss_pred             EEehhhhhhhcccc--chHHHHHhc------cC-CeeEEeeccccccc--chhhhhhhhcchHHHhh
Confidence            37789999886644  456673222      22 45889999986553  56777776655544443

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=87.47  E-value=0.53  Score=17.98  Aligned_cols=11  Identities=27%  Similarity=0.525  Sum_probs=6.2

Q ss_pred             eecCCCCcccc
Q psy3483          72 YKCFYCDYRSN   82 (99)
Q Consensus        72 ~~C~~c~~~f~   82 (99)
                      -.|+.||..|.
T Consensus        15 ~~Cp~CG~~F~   25 (26)
T PF10571_consen   15 KFCPHCGYDFE   25 (26)
T ss_pred             CcCCCCCCCCc
Confidence            35666666553

Several members are annotated as putative helicases.

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=86.39  E-value=1.2  Score=19.28  Aligned_cols=8  Identities=25%  Similarity=0.629  Sum_probs=3.6

Q ss_pred             eeccCCCc
Q psy3483          43 YVCCLCSK   50 (99)
Q Consensus        43 ~~c~~c~~   50 (99)
                      ..|+.||.
T Consensus        22 ~~Cp~CG~   29 (46)
T PRK00398         22 VRCPYCGY   29 (46)
T ss_pred             eECCCCCC
Confidence            34444443

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=86.27  E-value=0.69  Score=23.18  Aligned_cols=32  Identities=19%  Similarity=0.456  Sum_probs=20.9

Q ss_pred             cceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccC
Q psy3483          41 QRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNE   83 (99)
Q Consensus        41 ~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~   83 (99)
                      ..|.|+.|++. ...          ..+.-.|.|..|+..|.-
T Consensus        34 ~~~~Cp~C~~~-~Vk----------R~a~GIW~C~kCg~~fAG   65 (89)
T COG1997          34 AKHVCPFCGRT-TVK----------RIATGIWKCRKCGAKFAG   65 (89)
T ss_pred             cCCcCCCCCCc-cee----------eeccCeEEcCCCCCeecc
Confidence            34789999874 211          133456999999887753

>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases

Probab=85.31  E-value=1  Score=18.63  Aligned_cols=15  Identities=40%  Similarity=0.707  Sum_probs=8.1

Q ss_pred             CCCCCCCcceeccCC
Q psy3483          34 VSRPTKYQRYVCCLC   48 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c   48 (99)
                      -....|.+.|.|..|
T Consensus        21 G~~~~G~qryrC~~C   35 (36)
T PF03811_consen   21 GKSPSGHQRYRCKDC   35 (36)
T ss_pred             CCCCCCCEeEecCcC
Confidence            444455555666554

Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated

>KOG4167|consensus

Probab=84.80  E-value=0.17  Score=34.75  Aligned_cols=25  Identities=20%  Similarity=0.259  Sum_probs=22.9

Q ss_pred             ceecCCCCccccCchHHHHHHHHhc
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~~~~   95 (99)
                      .|.|.+|++.|.-...+.+|+++|.
T Consensus       792 iFpCreC~kvF~KiKSrNAHMK~Hr  816 (907)
T KOG4167|consen  792 IFPCRECGKVFFKIKSRNAHMKTHR  816 (907)
T ss_pred             eeehHHHHHHHHHHhhhhHHHHHHH
Confidence            4999999999999999999999884

>smart00531 TFIIE Transcription initiation factor IIE

Probab=84.45  E-value=1.3  Score=24.41  Aligned_cols=39  Identities=18%  Similarity=0.255  Sum_probs=21.7

Q ss_pred             CCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccc
Q psy3483          38 TKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRS   81 (99)
Q Consensus        38 ~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f   81 (99)
                      .....|.|+.|+..+... ..+.   .... ...|.|+.||...
T Consensus        95 ~~~~~Y~Cp~C~~~y~~~-ea~~---~~d~-~~~f~Cp~Cg~~l  133 (147)
T smart00531       95 TNNAYYKCPNCQSKYTFL-EANQ---LLDM-DGTFTCPRCGEEL  133 (147)
T ss_pred             cCCcEEECcCCCCEeeHH-HHHH---hcCC-CCcEECCCCCCEE
Confidence            444568888888754433 2221   1112 3348888887654

>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function

Probab=84.32  E-value=0.65  Score=25.12  Aligned_cols=15  Identities=13%  Similarity=0.483  Sum_probs=12.0

Q ss_pred             eeeCccccccccccc
Q psy3483           7 IVTCMYCSKILTYET   21 (99)
Q Consensus         7 ~~~c~~c~~~f~~~~   21 (99)
                      |++|..||+.|...+
T Consensus         1 PH~Ct~Cg~~f~dgs   15 (131)
T PF09845_consen    1 PHQCTKCGRVFEDGS   15 (131)
T ss_pred             CcccCcCCCCcCCCc
Confidence            568889999988665

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=83.94  E-value=1.3  Score=23.02  Aligned_cols=25  Identities=24%  Similarity=0.724  Sum_probs=22.6

Q ss_pred             eec----CCCCccccCchHHHHHHHHhcC
Q psy3483          72 YKC----FYCDYRSNERSNVKAHMIRRHS   96 (99)
Q Consensus        72 ~~C----~~c~~~f~~~~~l~~H~~~~~~   96 (99)
                      |.|    ..|+........+..|++..+|
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            899    8999999999999999988765

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PF14353 CpXC: CpXC protein

Probab=83.58  E-value=0.73  Score=24.63  Aligned_cols=13  Identities=31%  Similarity=0.843  Sum_probs=9.8

Q ss_pred             eeCcccccccccc
Q psy3483           8 VTCMYCSKILTYE   20 (99)
Q Consensus         8 ~~c~~c~~~f~~~   20 (99)
                      .+|+.|+..|...
T Consensus         2 itCP~C~~~~~~~   14 (128)
T PF14353_consen    2 ITCPHCGHEFEFE   14 (128)
T ss_pred             cCCCCCCCeeEEE
Confidence            3689999887654

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=83.57  E-value=0.56  Score=20.81  Aligned_cols=12  Identities=17%  Similarity=0.465  Sum_probs=7.9

Q ss_pred             eeeCcccccccc
Q psy3483           7 IVTCMYCSKILT   18 (99)
Q Consensus         7 ~~~c~~c~~~f~   18 (99)
                      .|.|..|+..|.
T Consensus         5 ey~C~~Cg~~fe   16 (52)
T TIGR02605         5 EYRCTACGHRFE   16 (52)
T ss_pred             EEEeCCCCCEeE
Confidence            366777777665

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=83.53  E-value=1.8  Score=18.78  Aligned_cols=10  Identities=30%  Similarity=0.816  Sum_probs=5.5

Q ss_pred             CceecCCCCc
Q psy3483          70 RPYKCFYCDY   79 (99)
Q Consensus        70 ~~~~C~~c~~   79 (99)
                      .+..|+.||.
T Consensus        18 ~~irC~~CG~   27 (44)
T smart00659       18 DVVRCRECGY   27 (44)
T ss_pred             CceECCCCCc
Confidence            3456666654

present in RNA polymerase I, II and III

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=83.44  E-value=0.75  Score=24.75  Aligned_cols=28  Identities=7%  Similarity=0.006  Sum_probs=18.3

Q ss_pred             eCccccccccccchhhhccchhhccCCCCCCCcceeccCCCccccc
Q psy3483           9 TCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHS   54 (99)
Q Consensus         9 ~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~   54 (99)
                      .|+.||+.|.    .|.+              .|..|+.||..+..
T Consensus        11 ~Cp~cg~kFY----DLnk--------------~p~vcP~cg~~~~~   38 (129)
T TIGR02300        11 ICPNTGSKFY----DLNR--------------RPAVSPYTGEQFPP   38 (129)
T ss_pred             cCCCcCcccc----ccCC--------------CCccCCCcCCccCc
Confidence            6888888876    2222              35678888875443

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>KOG3408|consensus

Probab=82.28  E-value=0.76  Score=24.51  Aligned_cols=26  Identities=15%  Similarity=0.327  Sum_probs=22.1

Q ss_pred             CCCceecCCCCccccCchHHHHHHHH
Q psy3483          68 KDRPYKCFYCDYRSNERSNVKAHMIR   93 (99)
Q Consensus        68 ~~~~~~C~~c~~~f~~~~~l~~H~~~   93 (99)
                      |--.|.|.+|.+-|.....|..|.++
T Consensus        54 G~GqfyCi~CaRyFi~~~~l~~H~kt   79 (129)
T KOG3408|consen   54 GGGQFYCIECARYFIDAKALKTHFKT   79 (129)
T ss_pred             CCceeehhhhhhhhcchHHHHHHHhc
Confidence            34459999999999999999999775

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=82.22  E-value=1.4  Score=30.76  Aligned_cols=12  Identities=25%  Similarity=0.479  Sum_probs=7.2

Q ss_pred             eCcccccccccc
Q psy3483           9 TCMYCSKILTYE   20 (99)
Q Consensus         9 ~c~~c~~~f~~~   20 (99)
                      .|..||..+...
T Consensus       437 ~C~~Cg~v~~Cp  448 (730)
T COG1198         437 LCRDCGYIAECP  448 (730)
T ss_pred             ecccCCCcccCC
Confidence            467777665443

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=81.71  E-value=1.1  Score=24.42  Aligned_cols=23  Identities=22%  Similarity=0.473  Sum_probs=14.0

Q ss_pred             ceecCCCCccccCchHHHHHHHHhcC
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMIRRHS   96 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~~~~~   96 (99)
                      -..|.+||+.|..   |.+|+++|+|
T Consensus        72 ~i~clecGk~~k~---LkrHL~~~~g   94 (132)
T PF05443_consen   72 YIICLECGKKFKT---LKRHLRTHHG   94 (132)
T ss_dssp             -EE-TBT--EESB---HHHHHHHTT-
T ss_pred             eeEEccCCcccch---HHHHHHHccC
Confidence            4689999997754   4889988865

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>KOG2893|consensus

Probab=81.61  E-value=0.26  Score=29.46  Aligned_cols=44  Identities=25%  Similarity=0.574  Sum_probs=28.2

Q ss_pred             ceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHH
Q psy3483           6 LIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSH   62 (99)
Q Consensus         6 ~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h   62 (99)
                      ++| |.+|.+.|..+. -|..|          ...+.|.|-+|.+-.++- -.|..|
T Consensus        10 kpw-cwycnrefddek-iliqh----------qkakhfkchichkkl~sg-pglsih   53 (341)
T KOG2893|consen   10 KPW-CWYCNREFDDEK-ILIQH----------QKAKHFKCHICHKKLFSG-PGLSIH   53 (341)
T ss_pred             Cce-eeecccccchhh-hhhhh----------hhhccceeeeehhhhccC-CCceee
Confidence            443 779999998877 55555          233458899988755544 344433

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=81.51  E-value=0.89  Score=17.05  Aligned_cols=10  Identities=20%  Similarity=0.524  Sum_probs=7.5

Q ss_pred             ceeeCccccc
Q psy3483           6 LIVTCMYCSK   15 (99)
Q Consensus         6 ~~~~c~~c~~   15 (99)
                      .+|.|+.||+
T Consensus        15 v~f~CPnCG~   24 (24)
T PF07754_consen   15 VPFPCPNCGF   24 (24)
T ss_pred             ceEeCCCCCC
Confidence            3688888874

It is likely to bind zinc via its four well-conserved cysteine residues.

>smart00614 ZnF_BED BED zinc finger

Probab=80.63  E-value=2.3  Score=18.74  Aligned_cols=21  Identities=33%  Similarity=0.706  Sum_probs=10.8

Q ss_pred             eecCCCCccccCc-----hHHHHHHH
Q psy3483          72 YKCFYCDYRSNER-----SNVKAHMI   92 (99)
Q Consensus        72 ~~C~~c~~~f~~~-----~~l~~H~~   92 (99)
                      ..|..|++.+...     ++|..|+.
T Consensus        19 a~C~~C~~~l~~~~~~gTs~L~rHl~   44 (50)
T smart00614       19 AKCKYCGKKLSRSSKGGTSNLRRHLR   44 (50)
T ss_pred             EEecCCCCEeeeCCCCCcHHHHHHHH
Confidence            3455555544433     46666655

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>PF15269 zf-C2H2_7: Zinc-finger

Probab=80.40  E-value=1.5  Score=19.09  Aligned_cols=21  Identities=48%  Similarity=1.007  Sum_probs=15.7

Q ss_pred             eecCCCCccccCchHHHHHHH
Q psy3483          72 YKCFYCDYRSNERSNVKAHMI   92 (99)
Q Consensus        72 ~~C~~c~~~f~~~~~l~~H~~   92 (99)
                      |+|..|......++.|..|++
T Consensus        21 ykcfqcpftc~~kshl~nhmk   41 (54)
T PF15269_consen   21 YKCFQCPFTCNEKSHLFNHMK   41 (54)
T ss_pred             ceeecCCcccchHHHHHHHHH
Confidence            677777777777777777765

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.39  E-value=2.3  Score=18.04  Aligned_cols=23  Identities=35%  Similarity=0.615  Sum_probs=10.4

Q ss_pred             CCceecCCCCccccCc----hHHHHHH
Q psy3483          69 DRPYKCFYCDYRSNER----SNVKAHM   91 (99)
Q Consensus        69 ~~~~~C~~c~~~f~~~----~~l~~H~   91 (99)
                      .....|..|++.+...    ++|..|+
T Consensus        14 ~~~a~C~~C~~~~~~~~~~ts~l~~HL   40 (45)
T PF02892_consen   14 KKKAKCKYCGKVIKYSSGGTSNLKRHL   40 (45)
T ss_dssp             SS-EEETTTTEE-----SSTHHHHHHH
T ss_pred             cCeEEeCCCCeEEeeCCCcHHHHHHhh
Confidence            3345566666555443    4666665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	99
3uk3_C	57	Crystal Structure Of Znf217 Bound To Dna Length = 5		6e-05
1bbo_A	57	High-Resolution Solution Structure Of The Double Cy		8e-05
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		2e-04
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		6e-04

>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna Length = 57

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 45 CCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
          C  C K+  S+   +  H+RTHT ++PYKC +C+Y + ++++++ H+ R H
Sbjct: 7  CSYCGKFFRSNYY-LNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56

>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2 Zinc Finger From The Human Enhancer Binding Protein Mbp-1 Length = 57

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 42 RYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHM 91
          +Y+C  C   R    S ++ HIRTHT  RPY C YC++    + N+  HM
Sbjct: 1  KYICEECG-IRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 38  TKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSV 97
           T  + Y C  C K   SD   +  H RTHT ++PYKC  C    ++R+N++AH       
Sbjct: 45  TGEKPYKCPECGK-SFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGE 103
Query: 98  KP 99
           KP
Sbjct: 104 KP 105

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 38.9 bits (89), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 38 TKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHM 91
          T  + Y C  C  Y  +D+S +  H+R H+ +RP+KC  C Y S   S +  H+
Sbjct: 32 TGVKPYKCKTCD-YAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHL 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	99
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-08
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-04
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-07
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	9e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	4e-06
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	7e-06
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-05
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	1e-04
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	6e-04
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	1e-04
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-04
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-04
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-04
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	4e-04
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	4e-04
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-04
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	5e-04
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	5e-04
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	7e-04
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	8e-04
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	8e-04

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 46.3 bits (111), Expect = 1e-08
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
            C  CS    S  + +R H R H  DRP+KC YC + + + SN+  HM ++ 
Sbjct: 10 EKCSECSY-SCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM-KKF 60

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 35.9 bits (84), Expect = 1e-04
 Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 64 RTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
           + +   P KC  C Y  + ++ ++ H  R H
Sbjct: 2  SSGSSGHPEKCSECSYSCSSKAALRIHE-RIH 32

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 43.3 bits (103), Expect = 3e-07
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 43 YVCCLCSKYRHSDASKMRSHIRTHT--KDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
          Y C +C   R + +  M+ HI          + C +CD     +S++  H+ ++HS
Sbjct: 16 YECYICHA-RFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 39.4 bits (93), Expect = 9e-06
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 58 KMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
             S  RTH+ ++PY+C+ C  R  +   +K H+  + 
Sbjct: 2  SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHI-LQK 38

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 40.5 bits (95), Expect = 4e-06
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTK---DRPYKCFYCDYRSNERSNVKAHMIRRHSVKP 99
            C +C        + +  H R H +      + C +C  R  +  +V AH  + H    
Sbjct: 8  LQCEICGF-TCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 39.3 bits (91), Expect = 7e-06
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 42 RYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHM 91
          +Y+C  C   R    S ++ HIRTHT  RPY C YC++    + N+  HM
Sbjct: 1  KYICEECGI-RXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 38.6 bits (91), Expect = 2e-05
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP 99
          + C +C +   S +  + +HIRTHT ++P+ C  C  +       K H      + P
Sbjct: 4  FQCRICMR-NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR-DIQHILP 58

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 36.7 bits (86), Expect = 1e-04
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHM 91
          + C +C +   S +  + +HIRTHT ++P+ C  C  +       K H 
Sbjct: 35 FQCRICMR-NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT 82

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 34.7 bits (81), Expect = 6e-04
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 43 YVCCL--CSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHM 91
          Y C +  C + R S +  +  HIR HT  +P++C  C    +   ++  H+
Sbjct: 5  YACPVESCDR-RFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 35.9 bits (84), Expect = 1e-04
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
          +VC +C++   +    ++ H R+HT ++PY C  C+     R  +  H  + HS
Sbjct: 3  FVCEVCTR-AFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 36.4 bits (85), Expect = 1e-04
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 43 YVCCLCSKYRHSDASKMRSHIRT--HTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
          Y C +CS+  ++  S    H  T      + Y C +C      + N+ AH+ +  
Sbjct: 11 YRCKVCSR-VYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV-KII 63

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 36.6 bits (86), Expect = 1e-04
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
          Y C  C     +D+S +  H+R H+ +RP+KC  C Y S   S +  H+ R H
Sbjct: 37 YKCKTCDY-AAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHL-RSH 87

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 36.3 bits (85), Expect = 2e-04
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 43  YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
           + C +C +       ++R H+ +HT + PYKC  C  +  ++ ++++HMI+ HS
Sbjct: 67  FTCSVCQET-FRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 35.7 bits (83), Expect = 4e-04
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 43 YVCCL--CSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
          Y C    C   R + + ++  H R HT  +P++C  C+   +   ++  HM +RH
Sbjct: 46 YKCTWEGCDW-RFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM-KRH 98

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 35.3 bits (82), Expect = 4e-04
 Identities = 8/42 (19%), Positives = 15/42 (35%)

Query: 54 SDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
          S  S+++ H + H      K   C +     +    H+   H
Sbjct: 44 SLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 35.6 bits (83), Expect = 4e-04
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 43 YVCCL--CSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
          Y C    C + R S + +++ H R HT  +P++C  C  + +   ++K H  R H
Sbjct: 37 YQCDFKDCER-RFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHT-RTH 89

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 34.0 bits (79), Expect = 5e-04
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 61 SHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
              +   ++PY C  C  R      +K+H+ R H
Sbjct: 1  GSSGSSGGEKPYPCEICGTRFRHLQTLKSHL-RIH 34

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 35.6 bits (83), Expect = 5e-04
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 48  CSKYRHSDASKMRSHIRTHTKDRPYKC--FYCDYRSNERSNVKAHMIRRHS 96
           C K  +S    +++H+R+HT ++PY C    C    +  S+   H  R HS
Sbjct: 75  CRK-SYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 35.6 bits (83), Expect = 7e-04
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 43 YVCCLCSKYRH----SDASKMRSHIRTHTKDRPYKCFY--CDYRSNERSNVKAHM 91
          +VC      R          +  H+R HT ++P+KC +  C    +   N+K H+
Sbjct: 35 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHL 89

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 33.3 bits (77), Expect = 8e-04
 Identities = 8/30 (26%), Positives = 17/30 (56%)

Query: 62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHM 91
             +   ++PYKC  C  R  + ++++AH+
Sbjct: 2  SSGSSGGEKPYKCETCGARFVQVAHLRAHV 31

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 34.2 bits (79), Expect = 8e-04
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 43 YVCCL--CSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
          Y C +  C + R S + ++  HIR HT  +P++C  C    +   ++  H+ R H+
Sbjct: 20 YACPVESCDR-RFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHT 73

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	99
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.94
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.91
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.9
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.89
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.88
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.88
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.87
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.87
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.86
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.86
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.86
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.86
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.85
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.85
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.84
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.84
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.83
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.83
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.82
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.82
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.82
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.81
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.79
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.79
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.79
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.79
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.77
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.76
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.76
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.75
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.75
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.75
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.75
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.73
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.73
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.73
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.72
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.71
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.7
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.7
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.7
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.69
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.69
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.68
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.68
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.67
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.65
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.65
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.65
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.65
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.64
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.63
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.59
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.58
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.58
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.57
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.57
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.57
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.56
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.55
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.55
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.54
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.54
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.53
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.52
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.52
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.51
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.51
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.5
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.49
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.48
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.48
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.47
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.47
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.46
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.45
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.43
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.43
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.42
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.42
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.42
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.41
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.41
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.39
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.39
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.39
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.38
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.38
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.38
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.38
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.38
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.38
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.38
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.38
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.38
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.38
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.38
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.38
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.38
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.38
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.37
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.37
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.37
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.37
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.37
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.37
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.37
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.37
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.37
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.37
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.37
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.37
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.37
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.37
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.37
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.36
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.36
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.36
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.36
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.36
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.36
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.36
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.36
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.36
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.36
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.36
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.35
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.35
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.35
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.35
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.34
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.33
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.33
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.33
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.33
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.33
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.32
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.32
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.32
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.32
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.32
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.32
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.32
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.31
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.31
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.31
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.31
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.31
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.3
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.3
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.3
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.3
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.29
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.29
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.29
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.29
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.29
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.28
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.28
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.28
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.28
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.28
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.28
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.28
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.28
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.28
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.27
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.27
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.27
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.27
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.26
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.26
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.26
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.26
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.26
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.25
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.25
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.25
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.25
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.24
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.24
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.24
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.24
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.24
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.24
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.24
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.24
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.24
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.24
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.23
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.23
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.23
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.23
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.23
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.23
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.22
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.22
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.22
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.22
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.22
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.22
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.22
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.22
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.21
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.21
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.21
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.21
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.21
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.21
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.2
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.2
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.2
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.2
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.2
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.2
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.19
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.19
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.19
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.19
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.19
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.19
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.19
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.19
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.18
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.17
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.15
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.15
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.14
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.14
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	99.12
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.12
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.11
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.11
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	99.11
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.09
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	99.07
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.07
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.06
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	99.01
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.96
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.96
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.95
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.95
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.94
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.94
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.92
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.91
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.91
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.91
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.9
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.9
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.9
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.89
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.88
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.87
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.86
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.85
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.81
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.28
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.79
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	98.27
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.77
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.77
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.77
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.76
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.76
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.74
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.74
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.74
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.72
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.67
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.67
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.66
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.65
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.65
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.65
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.65
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.65
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.62
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.56
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.95
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.52
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.4
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.4
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.34
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.34
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.31
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.3
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.29
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.61
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.28
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.28
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.25
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.57
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.24
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.23
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.18
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.13
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.12
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.36
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.08
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.76
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.75
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.63
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.2
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.69
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.9
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	95.7
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	95.66
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.3
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	94.33
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	92.99
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	92.91
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	92.46
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	86.82
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.2
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	85.81
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	85.54
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	85.54
3jyw_9	72	60S ribosomal protein L43; eukaryotic ribosome, RA	85.22
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	84.93
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	84.76
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	83.9
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	82.5
3cc2_Z	116	50S ribosomal protein L37AE, 50S ribosomal protein	80.03

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.94  E-value=1.2e-28  Score=131.52  Aligned_cols=91  Identities=21%  Similarity=0.389  Sum_probs=85.9

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCcc
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYR   80 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~   80 (99)
                      +|+|+++|.|++|++.|.... .|..|      +..|+++++|.|++|++.|... ..|..|+++|++++||.|..|++.
T Consensus        16 ~h~Gek~y~C~~C~k~F~~~~-~L~~H------~~~H~~~k~~~C~~C~k~F~~~-~~L~~H~~~H~~~k~~~C~~C~k~   87 (133)
T 2lt7_A           16 IVDGRVYYICIVCKRSYVCLT-SLRRH------FNIHSWEKKYPCRYCEKVFPLA-EYRTKHEIHHTGERRYQCLACGKS   87 (133)
T ss_dssp             EETTEEEEEETTTCCEESCHH-HHHHH------HHHHHCCSCEECSSSSCEESSH-HHHHHHHHHHHTCCCEEESSSCCE
T ss_pred             ecCCCcCeECCCCCCCcCCHH-HHHHH------HHHcCCCCCeeCCccCeecccc-cchhhhccccCCCccccCCCCCCC
Confidence            478999999999999999999 99999      8889999999999999988877 999999999999999999999999


Q ss_pred             ccCchHHHHHHHHhcCCCC
Q psy3483          81 SNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        81 f~~~~~l~~H~~~~~~~kp   99 (99)
                      |.....|..|++++++++|
T Consensus        88 F~~~~~L~~H~~~hh~~~p  106 (133)
T 2lt7_A           88 FINYQFMSSHIKSVHSQDP  106 (133)
T ss_dssp             ESSHHHHHHHHHHHTCCCT
T ss_pred             cCCHHHHHHHhHHhcCCCC
Confidence            9999999999999998765

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=1.6e-24  Score=109.54  Aligned_cols=90  Identities=23%  Similarity=0.493  Sum_probs=84.4

Q ss_pred             CCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccc
Q psy3483           2 KSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRS   81 (99)
Q Consensus         2 h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f   81 (99)
                      +.++++|.|..|++.|.... .|..|      +..|.++++|.|.+|++.|... ..|..|+..|.++++|.|..|++.|
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~-~l~~H------~~~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f   74 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKD-KLKTH------MRCHTGVKPYKCKTCDYAAADS-SSLNKHLRIHSDERPFKCQICPYAS   74 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHH-HHHHH------GGGCCCCCSEECSSSCCEESSH-HHHHHHHHHSCCCCCEECSSSSCEE
T ss_pred             CCCCcCeECCCCCCccCCHH-HHHHH------HHhcCCCCCEeCCCCCCccCCH-HHHHHHHHHhCCCCCccCCCCCCcc
Confidence            56789999999999999998 99999      8899999999999999988777 9999999999999999999999999


Q ss_pred             cCchHHHHHHHHhcCCCC
Q psy3483          82 NERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        82 ~~~~~l~~H~~~~~~~kp   99 (99)
                      .....|..|+++|+|+++
T Consensus        75 ~~~~~l~~H~~~h~~~~~   92 (96)
T 2dmd_A           75 RNSSQLTVHLRSHTGDSG   92 (96)
T ss_dssp             SSHHHHHHHHTTCCSCCC
T ss_pred             CCHHHHHHHHHHhcCCCC
Confidence            999999999999998864

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.90  E-value=1.9e-24  Score=108.07  Aligned_cols=88  Identities=22%  Similarity=0.446  Sum_probs=78.5

Q ss_pred             CCceeeCc--cccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccc
Q psy3483           4 TELIVTCM--YCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRS   81 (99)
Q Consensus         4 ~~~~~~c~--~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f   81 (99)
                      |++||.|+  .|++.|.... .|..|      +..|.++++|.|..|++.|... ..|..|+..|.++++|.|..|++.|
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~-~l~~H------~~~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f   72 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSG-SLTRH------IRIHTGQKPFQCRICMRNFSRS-DHLTTHIRTHTGEKPFACDICGRKF   72 (90)
T ss_dssp             --CCEECCSSSCCCEESSHH-HHHHH------HHHHHCCCCEECTTTCCEESCH-HHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred             CCCceECCCCCCCCccCCHH-HHHHH------HHHhCCCCCccCCCCCcccCCH-HHHHHHHHHcCCCCCccCCCCCchh
Confidence            57899998  6999999998 99999      7888889999999999988777 9999999999999999999999999


Q ss_pred             cCchHHHHHHHHhcCCCC
Q psy3483          82 NERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        82 ~~~~~l~~H~~~~~~~kp   99 (99)
                      .....|..|+++|+|+++
T Consensus        73 ~~~~~l~~H~~~H~~~k~   90 (90)
T 1a1h_A           73 ARSDERKRHTKIHLRQKD   90 (90)
T ss_dssp             SSHHHHHHHHGGGGC---
T ss_pred             CCHHHHHHHHHHhcccCC
Confidence            999999999999999875

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.89  E-value=5.1e-24  Score=109.46  Aligned_cols=89  Identities=21%  Similarity=0.452  Sum_probs=83.0

Q ss_pred             CCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCcccc
Q psy3483           3 STELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSN   82 (99)
Q Consensus         3 ~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~   82 (99)
                      .++++|.|..|++.|.... .|..|      +..|.++++|.|.+|++.|... ..|..|+..|.++++|.|..|++.|.
T Consensus        13 ~~~~~~~C~~C~~~f~~~~-~l~~H------~~~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~   84 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSY-NLLIH------ERTHTDERPYTCDICHKAFRRQ-DHLRDHRYIHSKEKPFKCQECGKGFC   84 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHH-HHHHH------HHHHCCSCCCBCSSSCCBCSCH-HHHHHHGGGSCCCCTTSCSSSCCCCS
T ss_pred             CCCcCeECCCCCCccCCHH-HHHHH------HHHcCCCCCcCCCCccchhCCH-HHHHHHHHHhCCCCCeECCCcCCccc
Confidence            4577899999999999988 89999      7888999999999999988777 99999999999999999999999999


Q ss_pred             CchHHHHHHHHhcCCCC
Q psy3483          83 ERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        83 ~~~~l~~H~~~~~~~kp   99 (99)
                      ....|..|+++|++++|
T Consensus        85 ~~~~L~~H~~~H~~~~~  101 (106)
T 2ee8_A           85 QSRTLAVHKTLHMQTSS  101 (106)
T ss_dssp             SHHHHHHHHHHTTSCCC
T ss_pred             CHHHHHHHHHHhCCCCC
Confidence            99999999999999876

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.88  E-value=6.3e-24  Score=118.87  Aligned_cols=90  Identities=26%  Similarity=0.444  Sum_probs=68.9

Q ss_pred             CCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccc
Q psy3483           2 KSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRS   81 (99)
Q Consensus         2 h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f   81 (99)
                      |.++++|.|+.|++.|.... .|..|      +..|.++++|.|++|++.|... ..|..|++.|.+++||.|..|++.|
T Consensus       100 h~~~~~~~C~~C~~~f~~~~-~l~~H------~~~h~~~~~~~C~~C~~~f~~~-~~L~~H~~~H~~~~~~~C~~C~~~f  171 (190)
T 2i13_A          100 HTGEKPYACPECGKSFSQLA-HLRAH------QRTHTGEKPYKCPECGKSFSRE-DNLHTHQRTHTGEKPYKCPECGKSF  171 (190)
T ss_dssp             HHTCCCEECTTTCCEESSHH-HHHHH------HHHHHCCCCEECTTTCCEESCH-HHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred             cCCCCCCcCCCCCCccCCHH-HHHHH------HHHhCCCCCeECCCCCcccCCH-HHHHHHHHhcCCCCCeECCCCCCcc
Confidence            34566777777777777666 67777      6667788888898898877766 8888888888888899999999999


Q ss_pred             cCchHHHHHHHHhcCCCC
Q psy3483          82 NERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        82 ~~~~~l~~H~~~~~~~kp   99 (99)
                      .....|..|+++|+|++|
T Consensus       172 ~~~~~L~~H~~~H~~~k~  189 (190)
T 2i13_A          172 SRRDALNVHQRTHTGKKT  189 (190)
T ss_dssp             SSHHHHHHHHTTC-----
T ss_pred             CCHHHHHHHHHhcCCCCC
Confidence            999999999998888876

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.88  E-value=6.4e-23  Score=105.98  Aligned_cols=87  Identities=24%  Similarity=0.428  Sum_probs=81.6

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCcc
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYR   80 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~   80 (99)
                      .|+++++|.| .|++.|.... .|..|      +..|.++++|.|.+|++.|... ..|..|++.|.++++|.|..|++.
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~-~l~~H------~~~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~   74 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKS-QRDRH------MSMHLGLRPYGCGVCGKKFKMK-HHLVGHMKIHTGIKPYECNICAKR   74 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHH-HHHHH------HHHHSCCCSEECTTTSCEESSS-HHHHHHHTTTCCCCCEECSSSCCE
T ss_pred             CCCCCCCEec-cCCCccCCHH-HHHHH------HHHcCCCcCccCCCCCcccCCH-HHHHHHHHHcCCCCCeeCCCCcch
Confidence            4899999999 9999999998 99999      7888899999999999988888 999999999999999999999999


Q ss_pred             ccCchHHHHHHHHhcC
Q psy3483          81 SNERSNVKAHMIRRHS   96 (99)
Q Consensus        81 f~~~~~l~~H~~~~~~   96 (99)
                      |.....|..|+++|+.
T Consensus        75 f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           75 FMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             ESCHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHccc
Confidence            9999999999998863

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.87  E-value=1.9e-22  Score=101.64  Aligned_cols=88  Identities=22%  Similarity=0.409  Sum_probs=80.6

Q ss_pred             CCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCC--CceecCCCCc
Q psy3483           2 KSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKD--RPYKCFYCDY   79 (99)
Q Consensus         2 h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~--~~~~C~~c~~   79 (99)
                      .+++++|.|..|++.|.... .|..|      +..|.++++|.|.+|++.|... ..|..|++.|.++  ++|.|..|++
T Consensus         2 s~~~~~~~C~~C~~~f~~~~-~l~~H------~~~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~~~C~~C~~   73 (95)
T 2yt9_A            2 SSGSSGVACEICGKIFRDVY-HLNRH------KLSHSGEKPYSCPVCGLRFKRK-DRMSYHVRSHDGSVGKPYICQSCGK   73 (95)
T ss_dssp             CCCCSCEECSSSCCEESSSH-HHHHH------HHHSCSSCSEECSSSCCEESCH-HHHHHHHHHHCCCCCSSBCCSSSCC
T ss_pred             CCCCCCeECCCCCCccCChH-HHHHH------HHhcCCCCCCcCCCCCCccCCH-HHHHHHHHHhcCCCCCceECCCccc
Confidence            36889999999999999998 99999      8889999999999999987777 9999999999987  9999999999


Q ss_pred             cccCchHHHHHHH-HhcCC
Q psy3483          80 RSNERSNVKAHMI-RRHSV   97 (99)
Q Consensus        80 ~f~~~~~l~~H~~-~~~~~   97 (99)
                      .|.....|..|++ .|+++
T Consensus        74 ~f~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           74 GFSRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             CBSSHHHHHHHHHHTSCCC
T ss_pred             hhCCHHHHHHHHHHhcCCC
Confidence            9999999999986 77765

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.87  E-value=4.5e-23  Score=101.38  Aligned_cols=82  Identities=27%  Similarity=0.502  Sum_probs=76.3

Q ss_pred             eeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchH
Q psy3483           7 IVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSN   86 (99)
Q Consensus         7 ~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~   86 (99)
                      ||.|+.|++.|.... .|..|      +..|.++++|.|..|++.|... ..|..|+..|.++++|.|..|++.|.....
T Consensus         1 ~~~C~~C~~~f~~~~-~l~~H------~~~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   72 (82)
T 2kmk_A            1 SFDCKICGKSFKRSS-TLSTH------LLIHSDTRPYPCQYCGKRFHQK-SDMKKHTFIHTGEKPHKCQVCGKAFSQSSN   72 (82)
T ss_dssp             CEECSSSCCEESSHH-HHHHH------HHHHHTCCCEECSSSCCEESSH-HHHHHHHHHHHTCCCEECTTTSCEESSHHH
T ss_pred             CccCCCCcccccCch-hHHHH------HHHcCCCCCeeCCcCChhhCCH-HHHHHHHHHhcCCCCCcCCCcchhhCChHH
Confidence            689999999999988 89999      7788889999999999987777 999999999999999999999999999999


Q ss_pred             HHHHHHHhcC
Q psy3483          87 VKAHMIRRHS   96 (99)
Q Consensus        87 l~~H~~~~~~   96 (99)
                      |..|+++|+|
T Consensus        73 l~~H~~~H~g   82 (82)
T 2kmk_A           73 LITHSRKHTG   82 (82)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHhhCC
Confidence            9999999986

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=3.5e-23  Score=106.58  Aligned_cols=88  Identities=15%  Similarity=0.172  Sum_probs=79.2

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCcc
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYR   80 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~   80 (99)
                      +|+++++|.|..|++.|.... .|..|      +..|  .++|.|.+|++.|... ..|..|+. |++++||.|..|++.
T Consensus        10 ~h~~~~~~~C~~C~~~f~~~~-~l~~H------~~~H--~~~~~C~~C~~~f~~~-~~l~~H~~-H~~~~~~~C~~C~~~   78 (107)
T 1wjp_A           10 PVENKEVYQCRLCNAKLSSLL-EQGSH------ERLC--RNAAVCPYCSLRFFSP-ELKQEHES-KCEYKKLTCLECMRT   78 (107)
T ss_dssp             CCCCCCCCBCTTTCCBCSSHH-HHHHH------HHHH--HHSBCCTTTCCCBSSH-HHHHHHHH-HCSTGGGEEGGGTEE
T ss_pred             ccCCCcCeECCCCCCccCCHH-HHHHH------HHHC--CCCccCCCCCCccCCH-HHHHHHHH-cCCCCCccCccccch
Confidence            478899999999999999998 89999      5555  3689999999988777 99999996 999999999999999


Q ss_pred             ccCchHHHHHHH-HhcCCCC
Q psy3483          81 SNERSNVKAHMI-RRHSVKP   99 (99)
Q Consensus        81 f~~~~~l~~H~~-~~~~~kp   99 (99)
                      |.....|..|++ .|++++|
T Consensus        79 f~~~~~L~~H~~~~H~~~~~   98 (107)
T 1wjp_A           79 FKSSFSIWRHQVEVHNQNNM   98 (107)
T ss_dssp             CSSHHHHHHHHHHTSCCCCC
T ss_pred             hCCHHHHHHHHHHHcCCCCC
Confidence            999999999997 8888875

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.86  E-value=2.2e-22  Score=105.83  Aligned_cols=88  Identities=27%  Similarity=0.539  Sum_probs=75.5

Q ss_pred             CCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccC--CCcccccChhHHHHHHHhhCCCCceecC--CCCc
Q psy3483           4 TELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCL--CSKYRHSDASKMRSHIRTHTKDRPYKCF--YCDY   79 (99)
Q Consensus         4 ~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~--c~~~~~~~~~~~~~h~~~~~~~~~~~C~--~c~~   79 (99)
                      ++++|.|+.|++.|.... .|..|      +..|.++++|.|..  |++.|... ..|..|++.|.++++|.|.  .|++
T Consensus        31 ~~~~~~C~~C~~~f~~~~-~l~~H------~~~h~~~~~~~C~~~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~~~C~~  102 (124)
T 1ubd_C           31 GPRVHVCAECGKAFVESS-KLKRH------QLVHTGEKPFQCTFEGCGKRFSLD-FNLRTHVRIHTGDRPYVCPFDGCNK  102 (124)
T ss_dssp             SCCCEECTTTCCEESSHH-HHHHH------GGGTSCCCCEECCSTTCCCEESCH-HHHHHHHHHHHCCCCCCCCSTTCCC
T ss_pred             CCCCeECCCCCchhCCHH-HHHHH------HHHcCCCCCeeCCCCCCcCccCCH-HHHHHHHHHhCCCCceECCCCCCCC
Confidence            677899999999998888 88888      88899999999975  99987776 8999999999999999995  5999


Q ss_pred             cccCchHHHHHHHHhcCCCC
Q psy3483          80 RSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        80 ~f~~~~~l~~H~~~~~~~kp   99 (99)
                      .|.....|..|+++|++++|
T Consensus       103 ~f~~~~~L~~H~~~H~~~k~  122 (124)
T 1ubd_C          103 KFAQSTNLKSHILTHAKAKN  122 (124)
T ss_dssp             CCSSTTTTHHHHHHHC----
T ss_pred             ccCCHHHHHHHHHHHccccc
Confidence            99999999999999998875

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.86  E-value=3.7e-22  Score=92.88  Aligned_cols=58  Identities=24%  Similarity=0.441  Sum_probs=54.3

Q ss_pred             CcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCC
Q psy3483          40 YQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        40 ~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      ++||.|.+||+.|... ..|..|+++|++++||.|.+|++.|...++|..|+++|+|++
T Consensus         2 EKpy~C~~C~k~F~~~-~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDA-SGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSH-HHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCH-HHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            6899999999987777 999999999999999999999999999999999999999974

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.86  E-value=1.8e-22  Score=105.35  Aligned_cols=89  Identities=24%  Similarity=0.466  Sum_probs=76.5

Q ss_pred             CCCceeeCcc--ccccccccchhhhccchhhccCCCCCCCcceecc--CCCcccccChhHHHHHHHhhCCCCceecCCCC
Q psy3483           3 STELIVTCMY--CSKILTYETETIMNHCKFCKAVSRPTKYQRYVCC--LCSKYRHSDASKMRSHIRTHTKDRPYKCFYCD   78 (99)
Q Consensus         3 ~~~~~~~c~~--c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~--~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~   78 (99)
                      +++++|.|.+  |++.|.... .|..|      +..|.++++|.|.  .|++.|... ..|..|+..|.++++|.|..|+
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~-~l~~H------~~~h~~~~~~~C~~~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~   73 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLS-HLQMH------SRKHTGEKPYQCDFKDCERRFSRS-DQLKRHQRRHTGVKPFQCKTCQ   73 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHH-HHHHH------HHHHHTTCCEECCSTTCCCEESSH-HHHHHHHHHHHCCCCEECTTTC
T ss_pred             CCCeeeeCCCCCCcchhCCHH-HHHHH------HHhhCCCCCccCCCCCCcCccCCH-HHHHHHHHHcCCCCCccCCccC
Confidence            5788899986  999998888 88888      7777888889998  799877766 8889999999889999999999


Q ss_pred             ccccCchHHHHHHHHhcCCCC
Q psy3483          79 YRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        79 ~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      +.|.....|..|+++|++++|
T Consensus        74 ~~f~~~~~l~~H~~~h~~~~~   94 (119)
T 2jp9_A           74 RKFSRSDHLKTHTRTHTGEKP   94 (119)
T ss_dssp             CEESCHHHHHHHHHHHHTCCC
T ss_pred             chhCCHHHHHHHHHHhcCCCC
Confidence            999999999999999888765

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.85  E-value=1.1e-21  Score=102.92  Aligned_cols=88  Identities=23%  Similarity=0.485  Sum_probs=62.9

Q ss_pred             CCCCceeeCccccccccccchhhhccchhhccCC---CCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCC
Q psy3483           2 KSTELIVTCMYCSKILTYETETIMNHCKFCKAVS---RPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCD   78 (99)
Q Consensus         2 h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~---~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~   78 (99)
                      |.++++|.|+.|++.|.... .|..|      +.   .+.++++|.|.+|++.|... ..|..|++.|.+++||.|..|+
T Consensus        30 h~~~~~~~C~~C~~~f~~~~-~l~~H------~~~~~~~~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~  101 (124)
T 2dlq_A           30 HTGEKPFECPKCGKCYFRKE-NLLEH------EARNCMNRSEQVFTCSVCQETFRRR-MELRLHMVSHTGEMPYKCSSCS  101 (124)
T ss_dssp             HSSCCSCBCTTTCCBCSSHH-HHHHH------HHHCCCCSCCCCEECSSSCCEESSH-HHHHHHHHHHSSSCSEECSSSC
T ss_pred             CCCCCCeECCCCCchhcCHH-HHHHH------HhhhhcCCCCCCeECCCCCCccCCH-HHHHHHHHHcCCCCCccCCCcc
Confidence            44556666666666666665 56666      33   35667778888888876666 7888888888888888888888


Q ss_pred             ccccCchHHHHHHH-HhcCC
Q psy3483          79 YRSNERSNVKAHMI-RRHSV   97 (99)
Q Consensus        79 ~~f~~~~~l~~H~~-~~~~~   97 (99)
                      +.|.....|..|++ .|.++
T Consensus       102 ~~f~~~~~l~~H~~~~H~~~  121 (124)
T 2dlq_A          102 QQFMQKKDLQSHMIKLHSGP  121 (124)
T ss_dssp             CEESSHHHHHHHHHHTSSCS
T ss_pred             chhCCHHHHHHHHHHHCCCC
Confidence            88888888888876 45554

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.85  E-value=9.3e-22  Score=103.27  Aligned_cols=90  Identities=19%  Similarity=0.349  Sum_probs=82.6

Q ss_pred             CCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHh---hCCCCceecCCCC
Q psy3483           2 KSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRT---HTKDRPYKCFYCD   78 (99)
Q Consensus         2 h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~---~~~~~~~~C~~c~   78 (99)
                      .+++++|.|+.|++.|.... .|..|      +..|.++++|.|..|++.|... ..|..|+..   +.++++|.|..|+
T Consensus         2 s~~~~~~~C~~C~~~f~~~~-~l~~H------~~~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~~~~~~~~~~~~C~~C~   73 (124)
T 2dlq_A            2 SSGSSGVECPTCHKKFLSKY-YLKVH------NRKHTGEKPFECPKCGKCYFRK-ENLLEHEARNCMNRSEQVFTCSVCQ   73 (124)
T ss_dssp             CCCCSSCCCTTTCCCCSSHH-HHHHH------HHHHSSCCSCBCTTTCCBCSSH-HHHHHHHHHCCCCSCCCCEECSSSC
T ss_pred             CCCCCCCCCCCCCCcCCCHH-HHHHH------HHhCCCCCCeECCCCCchhcCH-HHHHHHHhhhhcCCCCCCeECCCCC
Confidence            36889999999999999998 99999      7888899999999999988777 999999985   5889999999999


Q ss_pred             ccccCchHHHHHHHHhcCCCC
Q psy3483          79 YRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        79 ~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      +.|.....|..|+++|++++|
T Consensus        74 ~~f~~~~~l~~H~~~h~~~~~   94 (124)
T 2dlq_A           74 ETFRRRMELRLHMVSHTGEMP   94 (124)
T ss_dssp             CEESSHHHHHHHHHHHSSSCS
T ss_pred             CccCCHHHHHHHHHHcCCCCC
Confidence            999999999999999999876

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.84  E-value=2e-21  Score=108.72  Aligned_cols=90  Identities=29%  Similarity=0.506  Sum_probs=47.7

Q ss_pred             CCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccc
Q psy3483           2 KSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRS   81 (99)
Q Consensus         2 h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f   81 (99)
                      |+++++|.|+.|++.|.... .|..|      +..|.++++|.|+.|++.|... ..|..|+..|.++++|.|..|++.|
T Consensus        16 ~~~~~~~~C~~C~~~f~~~~-~l~~H------~~~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f   87 (190)
T 2i13_A           16 EPGEKPYACPECGKSFSRSD-HLAEH------QRTHTGEKPYKCPECGKSFSDK-KDLTRHQRTHTGEKPYKCPECGKSF   87 (190)
T ss_dssp             ---------------CCSSH-HHHHG------GGCC---CCEECTTTCCEESSH-HHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred             cCCCCCCcCCCCccccCCHH-HHHHH------HHHcCCCCCccCCCcCchhCCH-HHHHHHHHhcCCCCCccCcccCCcc
Confidence            55667777777777777776 77777      6666666666677776655555 6666666666666666666666666


Q ss_pred             cCchHHHHHHHHhcCCCC
Q psy3483          82 NERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        82 ~~~~~l~~H~~~~~~~kp   99 (99)
                      .....|..|++.|++++|
T Consensus        88 ~~~~~l~~H~~~h~~~~~  105 (190)
T 2i13_A           88 SQRANLRAHQRTHTGEKP  105 (190)
T ss_dssp             SCHHHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHhcCCCCC
Confidence            666666666666665543

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=1.7e-22  Score=105.09  Aligned_cols=89  Identities=13%  Similarity=0.197  Sum_probs=77.7

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCC--CCCCcce-eccCCCccc--ccChhHHHHHHHhhCCCCceecC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSR--PTKYQRY-VCCLCSKYR--HSDASKMRSHIRTHTKDRPYKCF   75 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~--~~~~~~~-~c~~c~~~~--~~~~~~~~~h~~~~~~~~~~~C~   75 (99)
                      +|++++||.|..|++.|.... .|..|      +..  +.+.+++ .|.+|++.|  ... ..|..|+++|++++||.|.
T Consensus        13 ~H~~~~~~~C~~C~k~f~~~~-~L~~H------~~~~~h~~~~~~~~C~~C~~~f~f~~~-~~l~~H~~~H~~~~~~~C~   84 (115)
T 2dmi_A           13 IFTGASKFRCKDCSAAYDTLV-ELTVH------MNETGHYRDDNHETDNNNPKRWSKPRK-RSLLEMEGKEDAQKVLKCM   84 (115)
T ss_dssp             CCCCCCSEEBSSSSCEESSHH-HHHHH------HHHTCCCBCSCCCCCCCCCSCCSSCCC-CCCCCCCCSCCCCSSCBCS
T ss_pred             eeCCCCCEECCccCchhcCHH-HHHHH------HHHhCccccCCCccCCCCCcccccccH-HHHHHHhhccCCCcceECC
Confidence            588999999999999999998 99999      554  5555554 499999977  566 8899999999999999999


Q ss_pred             CCCccccCchHHHHHHHHhcCC
Q psy3483          76 YCDYRSNERSNVKAHMIRRHSV   97 (99)
Q Consensus        76 ~c~~~f~~~~~l~~H~~~~~~~   97 (99)
                      .|++.|.....|..|++.++..
T Consensus        85 ~C~k~f~~~~~L~~H~~~hh~~  106 (115)
T 2dmi_A           85 YCGHSFESLQDLSVHMIKTKHY  106 (115)
T ss_dssp             SSCCBCSSHHHHHHHHHHTTTT
T ss_pred             CCCCccCCHHHHHHHHHHhCCc
Confidence            9999999999999999988654

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.83  E-value=8.5e-22  Score=102.80  Aligned_cols=85  Identities=20%  Similarity=0.444  Sum_probs=78.8

Q ss_pred             CCCCceeeCc--cccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceec--CCC
Q psy3483           2 KSTELIVTCM--YCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC--FYC   77 (99)
Q Consensus         2 h~~~~~~~c~--~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C--~~c   77 (99)
                      |.++++|.|+  .|++.|.... .|..|      +..|.++++|.|.+|++.|... ..|..|++.|+++++|.|  ..|
T Consensus        31 h~~~~~~~C~~~~C~~~f~~~~-~l~~H------~~~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~~~C  102 (119)
T 2jp9_A           31 HTGEKPYQCDFKDCERRFSRSD-QLKRH------QRRHTGVKPFQCKTCQRKFSRS-DHLKTHTRTHTGEKPFSCRWPSC  102 (119)
T ss_dssp             HHTTCCEECCSTTCCCEESSHH-HHHHH------HHHHHCCCCEECTTTCCEESCH-HHHHHHHHHHHTCCCEECCSTTC
T ss_pred             hCCCCCccCCCCCCcCccCCHH-HHHHH------HHHcCCCCCccCCccCchhCCH-HHHHHHHHHhcCCCCeeCCCCCC
Confidence            5678999998  7999999998 99999      7888899999999999988777 999999999999999999  899


Q ss_pred             CccccCchHHHHHHHHh
Q psy3483          78 DYRSNERSNVKAHMIRR   94 (99)
Q Consensus        78 ~~~f~~~~~l~~H~~~~   94 (99)
                      ++.|.....|..|+++|
T Consensus       103 ~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A          103 QKKFARSDELVRHHNMH  119 (119)
T ss_dssp             CCEESSHHHHHHHHHTC
T ss_pred             ccccCCHHHHHHHHhcC
Confidence            99999999999999875

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.83  E-value=1.4e-21  Score=106.24  Aligned_cols=84  Identities=30%  Similarity=0.515  Sum_probs=65.1

Q ss_pred             eeCccccccccccchhhhccchhhccCCCCCCCcceeccC--CCcccccChhHHHHHHHhhCCCCceecCC--CCccccC
Q psy3483           8 VTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCL--CSKYRHSDASKMRSHIRTHTKDRPYKCFY--CDYRSNE   83 (99)
Q Consensus         8 ~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~--c~~~~~~~~~~~~~h~~~~~~~~~~~C~~--c~~~f~~   83 (99)
                      |.|..|++.|.... .|..|      +..|.++++|.|..  |++.|... ..|..|++.|+++++|.|..  |++.|..
T Consensus        63 ~~C~~C~~~f~~~~-~l~~H------~~~h~~~~~~~C~~~~C~~~f~~~-~~L~~H~~~h~~~~~~~C~~~~C~k~f~~  134 (155)
T 2rpc_A           63 EECPREGKSFKAKY-KLVNH------IRVHTGEKPFPCPFPGCGKIFARS-ENLKIHKRTHTGEKPFKCEFEGCDRRFAN  134 (155)
T ss_dssp             TTCTTSSCCCSSHH-HHHHH------THHHHCCCSEECSCTTTCCEESCH-HHHHHHHTTTCSSCSBCCSSTTCCCCBSS
T ss_pred             cCCCCcccccCCHH-HHHHH------HHhcCCCCcccCCcCCCCCccCCH-HHHHHHHHhhCCCCCccCCCCCCCCccCC
Confidence            56677777776666 66666      66677777888877  88876666 78888888888888888886  8888888


Q ss_pred             chHHHHHHHHhcCCCC
Q psy3483          84 RSNVKAHMIRRHSVKP   99 (99)
Q Consensus        84 ~~~l~~H~~~~~~~kp   99 (99)
                      ...|..|+++|+|++|
T Consensus       135 ~~~L~~H~~~H~~~k~  150 (155)
T 2rpc_A          135 SSDRKKHMHVHTSDKS  150 (155)
T ss_dssp             HHHHHHSSTTTTSCCC
T ss_pred             HHHHHHHHHHhcCCCC
Confidence            8888888888888775

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.82  E-value=1.5e-20  Score=93.62  Aligned_cols=83  Identities=28%  Similarity=0.504  Sum_probs=76.8

Q ss_pred             CceeeCcc--ccccccccchhhhccchhhccCCCCCCCcceecc--CCCcccccChhHHHHHHHhhCCCCceecCCCCcc
Q psy3483           5 ELIVTCMY--CSKILTYETETIMNHCKFCKAVSRPTKYQRYVCC--LCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYR   80 (99)
Q Consensus         5 ~~~~~c~~--c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~--~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~   80 (99)
                      +.+|.|..  |++.|.... .|..|      +..|.++++|.|+  .|++.|... ..|..|+..|.++++|.|..|++.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~-~l~~H------~~~h~~~~~~~C~~~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~   74 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSS-HLKAH------LRTHTGEKPYHCDWDGCGWKFARS-DELTRHYRKHTGHRPFQCQKCDRA   74 (89)
T ss_dssp             CCCEECCSTTTCCEESSHH-HHHHH------HTTSCSSCCEECCSTTTCCEESSH-HHHHHHHHHHHCCCCEECSSSSCE
T ss_pred             CCCeeCCCCCCCCcCCCHH-HHHHH------HHhcCCCCCcCCCCCCCCCccCCH-HHHHHHHHHcCCCCCccCCCCCcc
Confidence            56899998  999999988 99999      8899999999997  699987777 999999999999999999999999


Q ss_pred             ccCchHHHHHHHHhc
Q psy3483          81 SNERSNVKAHMIRRH   95 (99)
Q Consensus        81 f~~~~~l~~H~~~~~   95 (99)
                      |.....|..|+++|.
T Consensus        75 f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           75 FSRSDHLALHMKRHF   89 (89)
T ss_dssp             ESSHHHHHHHGGGGC
T ss_pred             cCCHHHHHHHHHhhC
Confidence            999999999999874

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.82  E-value=1.5e-20  Score=95.41  Aligned_cols=85  Identities=25%  Similarity=0.507  Sum_probs=77.7

Q ss_pred             CCceeeCcc--ccccccccchhhhccchhhccCCCCCCCcceecc--CCCcccccChhHHHHHHHhhCCCCceecCCCCc
Q psy3483           4 TELIVTCMY--CSKILTYETETIMNHCKFCKAVSRPTKYQRYVCC--LCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDY   79 (99)
Q Consensus         4 ~~~~~~c~~--c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~--~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~   79 (99)
                      .+++|.|..  |++.|.... .|..|      +..|.++++|.|.  .|++.|... ..|..|++.|+++++|.|..|++
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~-~l~~H------~~~h~~~~~~~C~~~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~   83 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSS-HLKAH------LRTHTGEKPYKCTWEGCDWRFARS-DELTRHYRKHTGAKPFQCGVCNR   83 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHH-HHHHH------HHHHSCCCCEECCSSSCCCEESSH-HHHHHHHHHHTSCCSCBCSSSCC
T ss_pred             cCcceEcCCCCCCCcccCHH-HHHHH------HHHhCCCCCeeCCCCCCCCccCCH-HHHHHHHHHhCCCCCeECCCCcC
Confidence            356799986  999999988 99999      7888999999996  699987777 99999999999999999999999


Q ss_pred             cccCchHHHHHHHHhcC
Q psy3483          80 RSNERSNVKAHMIRRHS   96 (99)
Q Consensus        80 ~f~~~~~l~~H~~~~~~   96 (99)
                      .|.....|..|+++|++
T Consensus        84 ~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           84 SFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             BCSSHHHHHHHHHHHCC
T ss_pred             ccCCHHHHHHHHHHhCC
Confidence            99999999999999975

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.82  E-value=1.8e-20  Score=98.48  Aligned_cols=87  Identities=23%  Similarity=0.492  Sum_probs=77.8

Q ss_pred             CCceeeCc--cccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCC--CCc
Q psy3483           4 TELIVTCM--YCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFY--CDY   79 (99)
Q Consensus         4 ~~~~~~c~--~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~--c~~   79 (99)
                      ++++|.|+  .|++.|.... .|..|      +..| +.++|.|.+|++.|... ..|..|+..|.++++|.|..  |++
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~-~l~~H------~~~h-~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~~~C~~   72 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNS-AMRKH------LHTH-GPRVHVCAECGKAFVES-SKLKRHQLVHTGEKPFQCTFEGCGK   72 (124)
T ss_dssp             ---CEECCSTTCCCEESSHH-HHHHH------HGGG-SCCCEECTTTCCEESSH-HHHHHHGGGTSCCCCEECCSTTCCC
T ss_pred             CCCcccCCCCCCcCccCCHH-HHHHH------HHHc-CCCCeECCCCCchhCCH-HHHHHHHHHcCCCCCeeCCCCCCcC
Confidence            46789998  8999999998 99999      7777 78899999999988877 99999999999999999985  999


Q ss_pred             cccCchHHHHHHHHhcCCCC
Q psy3483          80 RSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        80 ~f~~~~~l~~H~~~~~~~kp   99 (99)
                      .|.....|..|+++|++++|
T Consensus        73 ~f~~~~~l~~H~~~h~~~~~   92 (124)
T 1ubd_C           73 RFSLDFNLRTHVRIHTGDRP   92 (124)
T ss_dssp             EESCHHHHHHHHHHHHCCCC
T ss_pred             ccCCHHHHHHHHHHhCCCCc
Confidence            99999999999999999875

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.81  E-value=8.4e-21  Score=103.04  Aligned_cols=86  Identities=28%  Similarity=0.534  Sum_probs=51.6

Q ss_pred             CCCceeeCcc--ccccccccchhhhccchhhccCCCCCCCcceeccC--CCcccccChhHHHHHH-HhhCCCCceecCC-
Q psy3483           3 STELIVTCMY--CSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCL--CSKYRHSDASKMRSHI-RTHTKDRPYKCFY-   76 (99)
Q Consensus         3 ~~~~~~~c~~--c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~--c~~~~~~~~~~~~~h~-~~~~~~~~~~C~~-   76 (99)
                      .++++|.|+.  |++.|.... .|..|      +..|.++++|.|+.  |++.|... ..|..|+ +.|+++++|.|.. 
T Consensus        63 ~~~~~~~C~~~~C~~~f~~~~-~l~~H------~~~h~~~~~~~C~~~~C~~~f~~~-~~L~~H~~~~H~~~~~~~C~~~  134 (155)
T 2gli_A           63 TGEKPHKCTFEGCRKSYSRLE-NLKTH------LRSHTGEKPYMCEHEGCSKAFSNA-SDRAKHQNRTHSNEKPYVCKLP  134 (155)
T ss_dssp             HCCCCCCCCSTTCCCCCSSHH-HHHHH------HHHTTTCCCEECCSTTCCCEESSS-STTHHHHHHTTCSCCCEECCST
T ss_pred             CCCCCccCCCCCCCCcccCHH-HHHHH------HHHcCCCCCeeCCCCCCCCccCCH-HHHHHHHHHhcCCCCCeeCCCC
Confidence            4455566653  666665555 55555      55566666666665  66655555 5666665 5566666666655 


Q ss_pred             -CCccccCchHHHHHHHHhcC
Q psy3483          77 -CDYRSNERSNVKAHMIRRHS   96 (99)
Q Consensus        77 -c~~~f~~~~~l~~H~~~~~~   96 (99)
                       |++.|.....|..|+++|+|
T Consensus       135 ~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          135 GCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             TTCCEESSHHHHHHHHHHSCC
T ss_pred             CCccccCCHHHHHHHHHhhcC
Confidence             66666666666666666554

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.79  E-value=1.2e-19  Score=101.42  Aligned_cols=87  Identities=28%  Similarity=0.415  Sum_probs=54.2

Q ss_pred             CCCCceeeCc--cccccccccchhhhccchhhccC-CCC-CCCcceec--cCCCcccccChhHHHHHHHhhCCCCceecC
Q psy3483           2 KSTELIVTCM--YCSKILTYETETIMNHCKFCKAV-SRP-TKYQRYVC--CLCSKYRHSDASKMRSHIRTHTKDRPYKCF   75 (99)
Q Consensus         2 h~~~~~~~c~--~c~~~f~~~~~~~~~h~~~~~~~-~~~-~~~~~~~c--~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~   75 (99)
                      |.++++|.|.  .|++.|.... .|..|      + ..| .+.++|.|  ..|++.|... ..|..|+++|++++||.|.
T Consensus        67 h~~~~~~~C~~~~C~~~f~~~~-~l~~H------~~~~h~~~~~~~~C~~~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~  138 (190)
T 1tf6_A           67 HTGEKNFTCDSDGCDLRFTTKA-NMKKH------FNRFHNIKICVYVCHFENCGKAFKKH-NQLKVHQFSHTQQLPYECP  138 (190)
T ss_dssp             TTTCCCEECCSSSCCCEESCHH-HHHHH------HHTTSSTTTSCCEECSSSSCEECSSH-HHHHHHHGGGSSSCSSBCC
T ss_pred             ccCCCceeCCCCCCCCccCCHH-HHHHH------HHHhcCCCcceeeCCCCCCccccCCH-HHHHHHHHHhCCCCCccCC
Confidence            4555566665  5666666555 55555      4 444 34556666  6666655555 6666666666666666665


Q ss_pred             C--CCccccCchHHHHHHHHhcC
Q psy3483          76 Y--CDYRSNERSNVKAHMIRRHS   96 (99)
Q Consensus        76 ~--c~~~f~~~~~l~~H~~~~~~   96 (99)
                      .  |++.|.....|..|+++|+|
T Consensus       139 ~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          139 HEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             SSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             CCCCCchhcCHHHHHHHHHHhCC
Confidence            5  66666666666666666654

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.79  E-value=8.3e-20  Score=99.19  Aligned_cols=90  Identities=22%  Similarity=0.362  Sum_probs=79.0

Q ss_pred             CCCCceeeCccccccccccchhhhccchhhccCCC-CCCCcc--------eeccCCCcccccChhHHHHHHHhhCCCCce
Q psy3483           2 KSTELIVTCMYCSKILTYETETIMNHCKFCKAVSR-PTKYQR--------YVCCLCSKYRHSDASKMRSHIRTHTKDRPY   72 (99)
Q Consensus         2 h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~-~~~~~~--------~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~   72 (99)
                      ..++.+|.|..|++.|.... .|..|      +.. |.+..+        +.|.+|++.|... ..|..|++.|.++++|
T Consensus        20 ~~~~~~~~C~~C~~~f~~~~-~L~~H------~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~   91 (155)
T 2rpc_A           20 DEAQLSRPKKSCDRTFSTMH-ELVTH------VTMEHVGGPEQNNHVCYWEECPREGKSFKAK-YKLVNHIRVHTGEKPF   91 (155)
T ss_dssp             CTTCCSSSCCCCCCCBSSHH-HHHHH------HHTTTSCCTTCSSCCCCBTTCTTSSCCCSSH-HHHHHHTHHHHCCCSE
T ss_pred             chhhcccccccCCcccCCHH-HHHHH------HHhhcCCCcccCCccccccCCCCcccccCCH-HHHHHHHHhcCCCCcc
Confidence            34567899999999999998 89999      655 665543        7899999988777 9999999999999999


Q ss_pred             ecCC--CCccccCchHHHHHHHHhcCCCC
Q psy3483          73 KCFY--CDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        73 ~C~~--c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      .|..  |++.|.....|..|+++|++++|
T Consensus        92 ~C~~~~C~~~f~~~~~L~~H~~~h~~~~~  120 (155)
T 2rpc_A           92 PCPFPGCGKIFARSENLKIHKRTHTGEKP  120 (155)
T ss_dssp             ECSCTTTCCEESCHHHHHHHHTTTCSSCS
T ss_pred             cCCcCCCCCccCCHHHHHHHHHhhCCCCC
Confidence            9998  99999999999999999999875

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.79  E-value=6.8e-20  Score=102.47  Aligned_cols=90  Identities=22%  Similarity=0.345  Sum_probs=77.5

Q ss_pred             CCCCceeeC--ccccccccccchhhhccchhhccCCCCCCCcceecc--CCCcccccChhHHHHHH-Hhh-CCCCceec-
Q psy3483           2 KSTELIVTC--MYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCC--LCSKYRHSDASKMRSHI-RTH-TKDRPYKC-   74 (99)
Q Consensus         2 h~~~~~~~c--~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~--~c~~~~~~~~~~~~~h~-~~~-~~~~~~~C-   74 (99)
                      |.++++|.|  +.|++.|.... .|..|      +..|.++++|.|.  .|++.|... ..|..|+ ..| .++++|.| 
T Consensus        37 h~~~~~~~C~~~~C~~~f~~~~-~l~~H------~~~h~~~~~~~C~~~~C~~~f~~~-~~l~~H~~~~h~~~~~~~~C~  108 (190)
T 1tf6_A           37 HTGEKPFPCKEEGCEKGFTSLH-HLTRH------SLTHTGEKNFTCDSDGCDLRFTTK-ANMKKHFNRFHNIKICVYVCH  108 (190)
T ss_dssp             HHCCCSSCCSSTTCCCCCSSHH-HHHHH------HTTTTTCCCEECCSSSCCCEESCH-HHHHHHHHTTSSTTTSCCEEC
T ss_pred             cCCCCCccCCCCCCChhhCCHH-HHHHH------HHHccCCCceeCCCCCCCCccCCH-HHHHHHHHHhcCCCcceeeCC
Confidence            567888888  78999988888 88888      8889999999999  899987776 8899998 566 57889999 


Q ss_pred             -CCCCccccCchHHHHHHHHhcCCCC
Q psy3483          75 -FYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        75 -~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                       ..|++.|.....|..|+++|++++|
T Consensus       109 ~~~C~k~f~~~~~L~~H~~~H~~~~~  134 (190)
T 1tf6_A          109 FENCGKAFKKHNQLKVHQFSHTQQLP  134 (190)
T ss_dssp             SSSSCEECSSHHHHHHHHGGGSSSCS
T ss_pred             CCCCccccCCHHHHHHHHHHhCCCCC
Confidence             8899999999999999999998875

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.79  E-value=9.1e-20  Score=98.94  Aligned_cols=91  Identities=21%  Similarity=0.417  Sum_probs=75.3

Q ss_pred             CCCCCceeeCccc-----cccccccchhhhccchhhccCCCCCCCcceeccC--CCcccccChhHHHHHHHhhCCCCcee
Q psy3483           1 MKSTELIVTCMYC-----SKILTYETETIMNHCKFCKAVSRPTKYQRYVCCL--CSKYRHSDASKMRSHIRTHTKDRPYK   73 (99)
Q Consensus         1 ~h~~~~~~~c~~c-----~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~--c~~~~~~~~~~~~~h~~~~~~~~~~~   73 (99)
                      +|.++++|.|++|     ++.|.... .|..|      +..|.++++|.|..  |++.|... ..|..|++.|.++++|.
T Consensus        28 ~h~~~~~~~C~~c~C~~c~~~f~~~~-~l~~H------~~~h~~~~~~~C~~~~C~~~f~~~-~~l~~H~~~h~~~~~~~   99 (155)
T 2gli_A           28 IHGERKEFVCHWGGCSRELRPFKAQY-MLVVH------MRRHTGEKPHKCTFEGCRKSYSRL-ENLKTHLRSHTGEKPYM   99 (155)
T ss_dssp             SSSCSSCCCCCBTTCTTTTCCCSSHH-HHHHH------THHHHCCCCCCCCSTTCCCCCSSH-HHHHHHHHHTTTCCCEE
T ss_pred             cCCCCcceeCCCCCccchhhhhhhHH-HHHHH------HHhcCCCCCccCCCCCCCCcccCH-HHHHHHHHHcCCCCCee
Confidence            3667788887643     37788777 88888      77788888899985  99987776 88999999999999999


Q ss_pred             cCC--CCccccCchHHHHHH-HHhcCCCC
Q psy3483          74 CFY--CDYRSNERSNVKAHM-IRRHSVKP   99 (99)
Q Consensus        74 C~~--c~~~f~~~~~l~~H~-~~~~~~kp   99 (99)
                      |..  |++.|.....|..|+ +.|++++|
T Consensus       100 C~~~~C~~~f~~~~~L~~H~~~~H~~~~~  128 (155)
T 2gli_A          100 CEHEGCSKAFSNASDRAKHQNRTHSNEKP  128 (155)
T ss_dssp             CCSTTCCCEESSSSTTHHHHHHTTCSCCC
T ss_pred             CCCCCCCCccCCHHHHHHHHHHhcCCCCC
Confidence            998  999999999999998 78888765

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.77  E-value=3.6e-20  Score=86.08  Aligned_cols=58  Identities=21%  Similarity=0.415  Sum_probs=54.0

Q ss_pred             CceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCC
Q psy3483           5 ELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDR   70 (99)
Q Consensus         5 ~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~   70 (99)
                      |+||.|.+|++.|.... .|..|      ++.|++++||.|.+||+.|... ..|..|+++|++++
T Consensus         2 EKpy~C~~C~k~F~~~~-~L~~H------~~~Ht~ekp~~C~~C~k~F~~~-~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDAS-GLSRH------RRAHLGYRPRSCPECGKCFRDQ-SEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHH-HHHHH------HHHHHTCCCEECTTTCCEESSH-HHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHH-HHHHH------HHHhCCCcCeECCCCCCCcCCH-HHHHHHhCccCCCC
Confidence            78999999999999999 99999      8999999999999999988877 99999999999874

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.76  E-value=2.2e-18  Score=83.19  Aligned_cols=64  Identities=27%  Similarity=0.488  Sum_probs=59.1

Q ss_pred             CCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          35 SRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        35 ~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      ..+.++++|.|.+|++.|... ..|..|++.|+++++|.|..|++.|.....|..|+++|+|++|
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~-~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   73 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYK-GNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP   73 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCH-HHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCC
T ss_pred             cccCCCCCeECCCCCceeCCH-HHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCC
Confidence            456778899999999988777 9999999999999999999999999999999999999999987

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.76  E-value=2e-18  Score=82.49  Aligned_cols=63  Identities=32%  Similarity=0.577  Sum_probs=57.6

Q ss_pred             CCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          36 RPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        36 ~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      .++++++|.|.+|++.|... ..|..|+++|+++++|.|..|++.|.....|..|+++|++++|
T Consensus         3 s~~~~~~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSK-AALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSH-HHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCCeECCCCCcccCCH-HHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            46778899999999987777 8999999999999999999999999999999999999999876

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=3.7e-19  Score=86.76  Aligned_cols=72  Identities=19%  Similarity=0.463  Sum_probs=65.5

Q ss_pred             CCCCceeeCcc--ccccccccchhhhccchhhccCC-CCCCCcceeccC--CCcccccChhHHHHHHHhhCCCCceecCC
Q psy3483           2 KSTELIVTCMY--CSKILTYETETIMNHCKFCKAVS-RPTKYQRYVCCL--CSKYRHSDASKMRSHIRTHTKDRPYKCFY   76 (99)
Q Consensus         2 h~~~~~~~c~~--c~~~f~~~~~~~~~h~~~~~~~~-~~~~~~~~~c~~--c~~~~~~~~~~~~~h~~~~~~~~~~~C~~   76 (99)
                      .+++++|.|..  |++.|.... .|..|      +. .|.++++|.|.+  |++.|... ..|..|+++|++++||.|..
T Consensus         2 s~~~~~~~C~~~~C~~~f~~~~-~L~~H------~~~~H~~~~~~~C~~~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~   73 (79)
T 2dlk_A            2 SSGSSGMPCDFPGCGRIFSNRQ-YLNHH------KKYQHIHQKSFSCPEPACGKSFNFK-KHLKEHMKLHSDTRDYICEF   73 (79)
T ss_dssp             CSCCSSEECSSTTTCCEESSHH-HHHHH------HHHGGGSCCCEECSCTTTCCEESSH-HHHHHHHHHHHTSCCCSCCS
T ss_pred             CCCCCCccCCCCCCcCccCCHH-HHHHH------HHHHhCCCCCeECCCCCCcCccCCH-HHHHHHHHHhCCCCCeeCCC
Confidence            46788999986  999999998 99999      77 788999999999  99988777 99999999999999999999


Q ss_pred             CCccc
Q psy3483          77 CDYRS   81 (99)
Q Consensus        77 c~~~f   81 (99)
                      |++.|
T Consensus        74 C~k~F   78 (79)
T 2dlk_A           74 SGPSS   78 (79)
T ss_dssp             SSCCC
T ss_pred             CCCCC
Confidence            99987

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=5.5e-18  Score=81.38  Aligned_cols=64  Identities=27%  Similarity=0.413  Sum_probs=59.7

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      ...|+++++|.|.+|++.|... ..|..|++.|.+++||.|..|++.|.....|..|+++|+++.
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRS-SILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSH-HHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CcccCCCCCccCCCCCCccCCH-HHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            5778999999999999988777 999999999999999999999999999999999999998864

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=5.1e-19  Score=89.75  Aligned_cols=70  Identities=19%  Similarity=0.335  Sum_probs=64.6

Q ss_pred             hhhccchhhccCCCCCCCcceeccCCCcccc-cChhHHHHHHHhhCC-CCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          23 TIMNHCKFCKAVSRPTKYQRYVCCLCSKYRH-SDASKMRSHIRTHTK-DRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        23 ~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~-~~~~~~~~h~~~~~~-~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      .+..|      +..|.++++|.|.+|++.|. .. ..|..|+++|.+ +++|.|..|++.|.....|..|++.|++++|
T Consensus        11 ~~~~h------~~~h~~~~~~~C~~C~k~f~~~~-~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp   82 (98)
T 2gqj_A           11 PEEQW------QRAIHERGEAVCPTCNVVTRKTL-VGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP   82 (98)
T ss_dssp             SCSHH------HHTTTTTSCCCCTTTCCCCSSCS-HHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCS
T ss_pred             cHHHH------HHHhccCCCcCCCCCCCChhhhH-HHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            55667      78899999999999999888 77 999999999998 9999999999999999999999999999886

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.75  E-value=7.1e-19  Score=93.67  Aligned_cols=65  Identities=18%  Similarity=0.359  Sum_probs=61.2

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      ...+.|+++|.|++|++.|... ..|..|+++|++++||.|..|++.|.....|..|+++|+|++|
T Consensus        14 ~~~h~Gek~y~C~~C~k~F~~~-~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   78 (133)
T 2lt7_A           14 ELIVDGRVYYICIVCKRSYVCL-TSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR   78 (133)
T ss_dssp             EEEETTEEEEEETTTCCEESCH-HHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCC
T ss_pred             eeecCCCcCeECCCCCCCcCCH-HHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCcc
Confidence            4667899999999999988877 9999999999999999999999999999999999999999986

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=7.3e-18  Score=81.89  Aligned_cols=65  Identities=31%  Similarity=0.487  Sum_probs=56.9

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      ...+.++++|.|.+|++.|... ..|..|++.|.++++|.|..|++.|.....|..|+++|++++|
T Consensus        10 ~~~~~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p   74 (77)
T 2cot_A           10 EWQQRERRRYKCDECGKSFSHS-SDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP   74 (77)
T ss_dssp             CSCCCCSCSSBCSSSCCBCSCH-HHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCC
T ss_pred             cCcCCCCCCEECCCCCcccCCH-HHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            3456677889999999987776 8899999999999999999999999999999999999999886

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.73  E-value=9.6e-19  Score=86.21  Aligned_cols=78  Identities=22%  Similarity=0.425  Sum_probs=72.0

Q ss_pred             eeeC--ccccccccccchhhhccchhhccCCCCCCCcceeccC--CCcccccChhHHHHHHHhhCCCCceecCC---CCc
Q psy3483           7 IVTC--MYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCL--CSKYRHSDASKMRSHIRTHTKDRPYKCFY---CDY   79 (99)
Q Consensus         7 ~~~c--~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~--c~~~~~~~~~~~~~h~~~~~~~~~~~C~~---c~~   79 (99)
                      ||.|  +.|++.|.... .|..|      +..|.++++|.|+.  |++.|... ..|..|++.|++   |.|..   |++
T Consensus         1 p~~C~~~~C~~~f~~~~-~l~~H------~~~h~~~~~~~C~~~~C~~~f~~~-~~l~~H~~~h~~---~~C~~~~~C~~   69 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHN-QLKVH------QFSHTQQLPYECPHEGCDKRFSLP-SRLKRHEKVHAG---YPCKKDDSCSF   69 (85)
T ss_dssp             CEECCSTTCCCEESSHH-HHHHH------HHHHHTTCCEECCSTTCCCEESSH-HHHHHHHHHHHS---EECCSCSSCCC
T ss_pred             CccCCCCCCCcccCCHH-HHHHH------HHHhCCCCCeeCCCCCCcCccCCH-HHHHHHHHHhCC---CCCCCCCCCCC
Confidence            6899  99999999998 99999      88888999999988  99988777 999999999998   99999   999


Q ss_pred             cccCchHHHHHHHHhc
Q psy3483          80 RSNERSNVKAHMIRRH   95 (99)
Q Consensus        80 ~f~~~~~l~~H~~~~~   95 (99)
                      .|.....|..|++.|+
T Consensus        70 ~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           70 VGKTWTLYLKHVAECH   85 (85)
T ss_dssp             EESSHHHHHHHHHHCC
T ss_pred             ccCCHHHHHHHHHhcC
Confidence            9999999999999874

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.73  E-value=1.5e-20  Score=93.68  Aligned_cols=82  Identities=11%  Similarity=0.206  Sum_probs=75.0

Q ss_pred             CceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCc
Q psy3483           5 ELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNER   84 (99)
Q Consensus         5 ~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~   84 (99)
                      ++||.|+.|++.|.... .|..|      +..|.++++|.|..|++.|... ..|..|+..+.+ .+|.|..|++.|...
T Consensus         1 ek~~~C~~C~k~f~~~~-~L~~H------~~~H~~~~~~~C~~C~k~f~~~-~~L~~H~~~h~~-~~~~c~~C~~~f~~~   71 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSD-HLTTH------IRTHTGEKPFACDICGRKFARS-DERKRHRDIQHI-LPILEDKVEELLSKN   71 (88)
T ss_dssp             CCCEECTTTCCEESCHH-HHHHH------HHHHHCCCCEECTTTCCEESSH-HHHHHHHHHHTH-HHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHH-HHHHH------HHHcCCCCCccCCCCCCccCCH-HHHHHHHHHhCC-CcchHHHHHHHHHHH
Confidence            57999999999999998 99999      8889999999999999988777 999999999885 789999999999999


Q ss_pred             hHHHHHHHHhc
Q psy3483          85 SNVKAHMIRRH   95 (99)
Q Consensus        85 ~~l~~H~~~~~   95 (99)
                      ..|..|++..+
T Consensus        72 ~~L~~H~~~~h   82 (88)
T 1llm_C           72 YHLENEVARLK   82 (88)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hhhHHHHHHHH
Confidence            99999988654

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=3.7e-18  Score=82.94  Aligned_cols=65  Identities=23%  Similarity=0.329  Sum_probs=60.5

Q ss_pred             CCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceec
Q psy3483           2 KSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC   74 (99)
Q Consensus         2 h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C   74 (99)
                      +.++++|.|..|++.|.... .|..|      +..|.++++|.|.+|++.|... ..|..|+++|++++||.|
T Consensus        13 ~~~~~~~~C~~C~~~f~~~~-~l~~H------~~~h~~~~~~~C~~C~~~f~~~-~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           13 QRERRRYKCDECGKSFSHSS-DLSKH------RRTHTGEKPYKCDECGKAFIQR-SHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCSCSSBCSSSCCBCSCHH-HHHHH------HTTTCCSCSEECSSSCCEESSH-HHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCCEECCCCCcccCCHH-HHHHH------HHHcCCCcCeeCCCCCCccCCH-HHHHHHHHHhCCCCCCCC
Confidence            46789999999999999998 99999      8999999999999999988777 999999999999999987

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=2.7e-18  Score=87.56  Aligned_cols=67  Identities=19%  Similarity=0.329  Sum_probs=43.6

Q ss_pred             CCCceeeCccccccccccchhhhccchhhccCC-CC---CCCcceeccCCCcccccChhHHHHH-HHhhCCCCceecCCC
Q psy3483           3 STELIVTCMYCSKILTYETETIMNHCKFCKAVS-RP---TKYQRYVCCLCSKYRHSDASKMRSH-IRTHTKDRPYKCFYC   77 (99)
Q Consensus         3 ~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~-~~---~~~~~~~c~~c~~~~~~~~~~~~~h-~~~~~~~~~~~C~~c   77 (99)
                      +|++||.|..|++.|.... .|..|      ++ .|   +++++|.|.+|++.|... ..|..| +++|++++||.|..+
T Consensus        14 ~gekpy~C~~Cgk~F~~~~-~L~~H------~r~~H~~~~~ekpf~C~~Cgk~F~~~-~~L~~H~~r~Htgekpy~C~~~   85 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLN-MFTFH------VDSEHPNVVLNSSYVCVECNFLTKRY-DALSEHNLKYHPGEENFKLTMV   85 (102)
T ss_dssp             CCCSSEECSSCSCEESCHH-HHHHH------HHHHCSSCCCSCCEEETTTTEEESST-HHHHTHHHHTSTTCCCEEEEEC
T ss_pred             CCCcCcCCCCCCCccCCHH-HHHHH------HHhhCCCCCCCCCcCCCCCCcccCCH-HHHHHHHHHhcCCCCCeeCCcc
Confidence            4566677777777776666 66666      44 35   446667777777766655 666677 566777777776653

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.70  E-value=4.1e-17  Score=80.65  Aligned_cols=64  Identities=16%  Similarity=0.303  Sum_probs=56.7

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHHH-HHhcCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHM-IRRHSVK   98 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~-~~~~~~k   98 (99)
                      +..+...++|.|++|++.|... ..|..|+++|++++||.|..|++.|....+|..|+ +.|++|.
T Consensus        20 ~~~~~~~~~h~C~~Cgk~F~~~-~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           20 LGLSASAECHLCPVCGESFASK-GAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CSSCCCCTTEECTTSCCEESSH-HHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCCCCEECCCCCCCcCcH-HHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            3455677889999999988877 99999999999999999999999999999999996 5687764

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=7.3e-17  Score=78.31  Aligned_cols=62  Identities=24%  Similarity=0.499  Sum_probs=56.4

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHH-hhCCC-CceecCCCCccccCchHHHHHHHHhcC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIR-THTKD-RPYKCFYCDYRSNERSNVKAHMIRRHS   96 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~-~~~~~-~~~~C~~c~~~f~~~~~l~~H~~~~~~   96 (99)
                      ++.|+++++|.|.+|++.|... ..|..|+. .|.++ ++|.|..|++.|.....|..|++.+++
T Consensus         7 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A            7 GRTHSGEKPYECYICHARFTQS-GTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CCCCSCCCSEECTTTCCEESCH-HHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             ccccCCCCCeECCCcCchhCCH-HHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            8999999999999999988877 99999997 68775 899999999999999999999998654

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=1.6e-17  Score=82.06  Aligned_cols=64  Identities=16%  Similarity=0.268  Sum_probs=38.9

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCC----CceecCCCCccccCchHHHHHHHHhcCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKD----RPYKCFYCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~----~~~~C~~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      ++.|+++++|.|.+|++.|... ..|..|+..+...    ++|.|..|++.|.....|..|+++|++++
T Consensus         7 ~~~H~~~k~~~C~~C~~~f~~~-~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~   74 (86)
T 1x6h_A            7 GRTHTGEKPYACSHCDKTFRQK-QLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPD   74 (86)
T ss_dssp             STTCCCCCCEECSSSSCEESSH-HHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCC
T ss_pred             cceecCCCCCcCCCCCCccCCH-HHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCC
Confidence            5566666666666666655554 6666666554433    56666666666666666666666666554

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=8.8e-17  Score=79.32  Aligned_cols=73  Identities=18%  Similarity=0.219  Sum_probs=64.3

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCC----cceeccCCCcccccChhHHHHHHHhhCCCCceecCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKY----QRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFY   76 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~----~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~   76 (99)
                      +|+++++|.|..|++.|.... .|..|      +..+...    ++|.|.+|++.|... ..|..|++.|.+++++.|..
T Consensus         9 ~H~~~k~~~C~~C~~~f~~~~-~l~~H------~~~~~~~~~~~~~~~C~~C~~~f~~~-~~L~~H~~~h~~~~~~~~~~   80 (86)
T 1x6h_A            9 THTGEKPYACSHCDKTFRQKQ-LLDMH------FKRYHDPNFVPAAFVCSKCGKTFTRR-NTMARHADNCAGPDGVEGEN   80 (86)
T ss_dssp             TCCCCCCEECSSSSCEESSHH-HHHHH------HHHTTCSSCCCCCEECSSSCCEESCH-HHHHHHHHHCCCCCSCCCCC
T ss_pred             eecCCCCCcCCCCCCccCCHH-HHHHH------HHHhcCCcCCCcceECCCCCChhCCH-HHHHHHHHHccCCCCcccCC
Confidence            588999999999999999998 89999      6544443    789999999987777 99999999999999999999


Q ss_pred             CCccc
Q psy3483          77 CDYRS   81 (99)
Q Consensus        77 c~~~f   81 (99)
                      |+..|
T Consensus        81 ~~~~~   85 (86)
T 1x6h_A           81 SGPSS   85 (86)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            98764

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=6.3e-17  Score=82.48  Aligned_cols=64  Identities=14%  Similarity=0.326  Sum_probs=57.7

Q ss_pred             CCCCCCcceeccCCCcccccChhHHHHHHH-hh---CCCCceecCCCCccccCchHHHHH-HHHhcCCCC
Q psy3483          35 SRPTKYQRYVCCLCSKYRHSDASKMRSHIR-TH---TKDRPYKCFYCDYRSNERSNVKAH-MIRRHSVKP   99 (99)
Q Consensus        35 ~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~-~~---~~~~~~~C~~c~~~f~~~~~l~~H-~~~~~~~kp   99 (99)
                      ...+|+++|.|..|++.|... ..|..|++ .|   ++++||.|..|++.|.....|..| +++|+|++|
T Consensus        11 ~~~~gekpy~C~~Cgk~F~~~-~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekp   79 (102)
T 2ghf_A           11 QNKKVEGGYECKYCTFQTPDL-NMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEEN   79 (102)
T ss_dssp             TCCCCCSSEECSSCSCEESCH-HHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCC
T ss_pred             ccCCCCcCcCCCCCCCccCCH-HHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCC
Confidence            445788999999999988777 99999997 58   678999999999999999999999 899999987

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.68  E-value=6.8e-17  Score=74.11  Aligned_cols=57  Identities=32%  Similarity=0.778  Sum_probs=49.2

Q ss_pred             CCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHHHHHhcC
Q psy3483          39 KYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS   96 (99)
Q Consensus        39 ~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~   96 (99)
                      |+++|.|.+|++.|... ..|..|+++|++++||.|..|++.|.....|..|+++|++
T Consensus         1 g~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSN-YYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCH-HHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCCh-HHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            45789999999987777 9999999999999999999999999999999999999874

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.68  E-value=1.5e-17  Score=80.23  Aligned_cols=63  Identities=21%  Similarity=0.533  Sum_probs=58.2

Q ss_pred             CCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCce
Q psy3483           2 KSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPY   72 (99)
Q Consensus         2 h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~   72 (99)
                      ++++++|.|..|++.|.... .|..|      +..|.++++|.|.+|++.|... ..|..|+++|++++||
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~-~l~~H------~~~H~~~~~~~C~~C~k~f~~~-~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKG-NLASH------KTVHTGEKPYRCNICGAQFNRP-ANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHH-HHHHH------HHHHCCCCSEECTTTCCEESCH-HHHHHHHHHHCCSCCC
T ss_pred             cCCCCCeECCCCCceeCCHH-HHHHH------HHHcCCCCCEECCCCCchhCCH-HHHHHHHHhcCCCCCC
Confidence            56889999999999999998 99999      8889999999999999988777 9999999999999986

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.67  E-value=1.2e-16  Score=73.26  Aligned_cols=56  Identities=36%  Similarity=0.781  Sum_probs=52.1

Q ss_pred             ceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCC
Q psy3483          42 RYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        42 ~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      ||.|.+|++.|... ..|..|+..|++++||.|..|++.|.....|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKP-SMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSH-HHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCH-HHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            57899999987777 999999999999999999999999999999999999999876

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=4.8e-17  Score=82.19  Aligned_cols=62  Identities=16%  Similarity=0.327  Sum_probs=56.2

Q ss_pred             CCCCCCCcceeccCCCccc-ccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHH-HHHhcCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYR-HSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAH-MIRRHSV   97 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~-~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H-~~~~~~~   97 (99)
                      ...+.++++|.|++|++.| ... ..|..|+++| +++||.|..|++.|.....|..| +++|+++
T Consensus        26 ~~~~~~~~~~~C~~C~k~F~~~~-~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~   89 (96)
T 2ctd_A           26 YLEIVDKGSVSCPTCQAVGRKTI-EGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSL   89 (96)
T ss_dssp             HHHHHHTSCEECTTTCSCEESSH-HHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCC
T ss_pred             HHHhcCCCCcCCCCCCCCcccCH-HHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCC
Confidence            5556778899999999988 676 9999999999 99999999999999999999999 8999864

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.65  E-value=3.6e-18  Score=90.27  Aligned_cols=59  Identities=20%  Similarity=0.442  Sum_probs=54.7

Q ss_pred             CCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHHHHHhcCC
Q psy3483          36 RPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSV   97 (99)
Q Consensus        36 ~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~   97 (99)
                      .|+++++|.|.+|++.|... ..|..|+++|  ++||.|..|++.|.....|..|+++|+|+
T Consensus        68 ~h~~~~~~~C~~C~k~f~~~-~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           68 ASKAISQFVCPLCLMPFSSS-VSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HHHHHCSEECTTTCCEESSH-HHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             HhCCCCCeECCCCCcccCCH-hHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            46778999999999988877 9999999999  89999999999999999999999999986

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=1.2e-16  Score=75.30  Aligned_cols=61  Identities=25%  Similarity=0.399  Sum_probs=54.6

Q ss_pred             CCCCCCcceeccCCCcccccChhHHHHHHHh-h-CCCCceecCCCCccccCchHHHHHHHHhcC
Q psy3483          35 SRPTKYQRYVCCLCSKYRHSDASKMRSHIRT-H-TKDRPYKCFYCDYRSNERSNVKAHMIRRHS   96 (99)
Q Consensus        35 ~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~-~-~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~   96 (99)
                      ..|+++++|.|+.|++.|... ..|..|+.. | .+++||.|..|++.|.....|..|++.++|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~-~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHI-SNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSH-HHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCH-HHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            456788999999999987777 899999988 7 689999999999999999999999999876

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=1.9e-16  Score=76.96  Aligned_cols=61  Identities=18%  Similarity=0.368  Sum_probs=44.2

Q ss_pred             CCCCcceeccCCCcccccChhHHHHHHHhhCC---CCceecCCCCccccCchHHHHHHH-HhcCCC
Q psy3483          37 PTKYQRYVCCLCSKYRHSDASKMRSHIRTHTK---DRPYKCFYCDYRSNERSNVKAHMI-RRHSVK   98 (99)
Q Consensus        37 ~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~---~~~~~C~~c~~~f~~~~~l~~H~~-~~~~~k   98 (99)
                      |+++++|.|.+|++.|... ..|..|++.|.+   +++|.|..|++.|.....|..|++ .|.+++
T Consensus         2 h~~~k~~~C~~C~k~f~~~-~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~   66 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQK-ASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL   66 (78)
T ss_dssp             CCSCCCEECSSSCCEESSH-HHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTS
T ss_pred             CCCCcCeECCCCCCeeCCH-HHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCC
Confidence            5677777777777766665 777777777764   777888888888888888888874 444443

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=1e-16  Score=76.44  Aligned_cols=64  Identities=17%  Similarity=0.228  Sum_probs=58.7

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCce
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPY   72 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~   72 (99)
                      .|+++++|.|..|++.|.... .|..|      +..|.++++|.|.+|++.|... ..|..|++.|.+++|.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~-~L~~H------~~~H~~~~~~~C~~C~~~f~~~-~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKA-ALRIH------ERIHCTDRPFKCNYCSFDTKQP-SNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHH-HHHHH------HGGGCCSCSEECSSSSCEESSH-HHHHHHHHHHHSSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHH-HHHHH------HHHcCCCCCEeCCCCCCccCCH-HHHHHHHHHHhCCCCC
Confidence            478999999999999999998 99999      8889999999999999988777 9999999999988774

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=9.8e-17  Score=76.93  Aligned_cols=62  Identities=26%  Similarity=0.418  Sum_probs=56.8

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDR   70 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~   70 (99)
                      +|+++++|.|+.|++.|.... .|..|      +..|.++++|.|.+|++.|... ..|..|+++|+++.
T Consensus         8 ~H~~~k~~~C~~C~k~f~~~~-~L~~H------~~~h~~~~~~~C~~C~~~f~~~-~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            8 IHSGEKPYGCVECGKAFSRSS-ILVQH------QRVHTGEKPYKCLECGKAFSQN-SGLINHQRIHTSGP   69 (72)
T ss_dssp             TTTTCCCEECSSSCCEESSHH-HHHHH------HHGGGCSCCEECSSSCCEESSH-HHHHHHHHHHHSSS
T ss_pred             ccCCCCCccCCCCCCccCCHH-HHHHH------HHhcCCCCCeECCCCCcccCCH-HHHHHHHHhcCCCC
Confidence            588999999999999999998 99999      8889999999999999988777 99999999998764

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=1.8e-15  Score=70.00  Aligned_cols=56  Identities=23%  Similarity=0.559  Sum_probs=49.3

Q ss_pred             cceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHHH-HHhcCC
Q psy3483          41 QRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHM-IRRHSV   97 (99)
Q Consensus        41 ~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~-~~~~~~   97 (99)
                      ++|.|.+|++.|... ..|..|++.|++++||.|..|++.|.....|..|+ +.|+++
T Consensus         1 k~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQ-EHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCH-HHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCH-HHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            368899999987776 89999999999999999999999999999999996 677765

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=2.9e-15  Score=70.66  Aligned_cols=60  Identities=17%  Similarity=0.277  Sum_probs=53.3

Q ss_pred             CCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecC-CCCccccCchHHHHHHHHhcCCCC
Q psy3483          37 PTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCF-YCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        37 ~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~-~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      ..++++|.|..|++.|. . ..|..|+++ ++++||.|. .|++.|...+.|..|+++|.+..|
T Consensus         5 ~C~~~~~~C~~C~k~f~-~-~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-F-DTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-H-HHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             cCCCCCeeccccCCccC-H-HHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            35678899999999877 6 999999998 999999999 999999999999999999987765

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.58  E-value=9.6e-16  Score=75.70  Aligned_cols=61  Identities=16%  Similarity=0.305  Sum_probs=54.3

Q ss_pred             CCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHH-HhhCCCC
Q psy3483           2 KSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHI-RTHTKDR   70 (99)
Q Consensus         2 h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~-~~~~~~~   70 (99)
                      +.++++|.|++|++.|.... .|..|      ++.|+++++|.|.+|++.|... ..|..|+ +.|+++.
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~-~L~~H------~~~H~~~k~~~C~~C~k~F~~~-~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKG-AQERH------LRLLHAAQVFPCKYCPATFYSS-PGLTRHINKCHPSEN   84 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHH-HHHHH------HHTTSCSSSEECTTSSCEESSH-HHHHHHHHTTCTTCC
T ss_pred             CCCCCCEECCCCCCCcCcHH-HHhhh------hhhccCCCccCCCCCCCEeCCH-HHHHHhCcccCcCCC
Confidence            55678899999999999999 99999      8999999999999999988877 9999996 5687764

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=7.5e-15  Score=75.47  Aligned_cols=63  Identities=27%  Similarity=0.479  Sum_probs=58.4

Q ss_pred             CCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          35 SRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        35 ~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      ..|+++++|.| .|++.|... ..|..|+..|.++++|.|..|++.|.....|..|++.|++++|
T Consensus         3 ~~h~~~k~~~C-~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   65 (110)
T 2csh_A            3 SGSSGDKLYPC-QCGKSFTHK-SQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP   65 (110)
T ss_dssp             CCCCCCCCEEC-TTSCEESSH-HHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCC
T ss_pred             CCCCCCCCEec-cCCCccCCH-HHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            45788999999 999988777 9999999999999999999999999999999999999998875

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=8.9e-15  Score=71.02  Aligned_cols=61  Identities=16%  Similarity=0.379  Sum_probs=55.6

Q ss_pred             CCCcceeccC--CCcccccChhHHHHHHH-hhCCCCceecCC--CCccccCchHHHHHHHHhcCCCC
Q psy3483          38 TKYQRYVCCL--CSKYRHSDASKMRSHIR-THTKDRPYKCFY--CDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        38 ~~~~~~~c~~--c~~~~~~~~~~~~~h~~-~~~~~~~~~C~~--c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      +++++|.|..  |++.|... ..|..|++ .|+++++|.|..  |++.|.....|..|+++|++++|
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~-~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~   68 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNR-QYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD   68 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSH-HHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCC
T ss_pred             CCCCCccCCCCCCcCccCCH-HHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCC
Confidence            5667888986  99988777 99999999 799999999999  99999999999999999999876

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.57  E-value=7.3e-15  Score=73.74  Aligned_cols=62  Identities=29%  Similarity=0.615  Sum_probs=57.2

Q ss_pred             CCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          37 PTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        37 ~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      +.++++|.|.+|++.|... ..|..|++.|.++++|.|..|++.|.....|..|++.|++++|
T Consensus         3 ~~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   64 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRK-DKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP   64 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCH-HHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCC
T ss_pred             CCCCcCeECCCCCCccCCH-HHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            4567889999999988777 9999999999999999999999999999999999999998875

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=4.7e-15  Score=71.09  Aligned_cols=61  Identities=21%  Similarity=0.473  Sum_probs=55.2

Q ss_pred             CCCCCCCcceecc--CCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHHHHHhc
Q psy3483          34 VSRPTKYQRYVCC--LCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        34 ~~~~~~~~~~~c~--~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~   95 (99)
                      ...++++++|.|+  .|++.|... ..|..|++.|.++++|.|..|++.|.....|..|+++|+
T Consensus        11 ~~~~~~~~~~~C~~~~C~k~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           11 NYVVPKMRPYACPVESCDRRFSRS-DELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             SCCCCCCCCEECSSTTBCCEESSH-HHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             hccCCCCCccCCcCCCCCCccCCH-HHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            3557888999997  599988777 999999999999999999999999999999999999875

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.55  E-value=2.1e-14  Score=71.93  Aligned_cols=59  Identities=19%  Similarity=0.448  Sum_probs=55.5

Q ss_pred             CCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHHHHHhcCC
Q psy3483          38 TKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSV   97 (99)
Q Consensus        38 ~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~   97 (99)
                      .++++|.|.+|++.|... ..|..|+..|.++++|.|..|++.|.....|..|++.|+++
T Consensus         3 ~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   61 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDV-YHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS   61 (95)
T ss_dssp             CCCSCEECSSSCCEESSS-HHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCC
T ss_pred             CCCCCeECCCCCCccCCh-HHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCC
Confidence            567889999999988888 99999999999999999999999999999999999999886

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.55  E-value=1.8e-15  Score=77.29  Aligned_cols=65  Identities=18%  Similarity=0.283  Sum_probs=59.9

Q ss_pred             CCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceec
Q psy3483           2 KSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC   74 (99)
Q Consensus         2 h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C   74 (99)
                      |.++++|.|..|++.|.... .|..|      +..|.++++|.|.+|++.|... ..|..|+++|.++++|..
T Consensus        40 h~~~~~~~C~~C~~~f~~~~-~l~~H------~~~h~~~~~~~C~~C~~~f~~~-~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           40 HTDERPYTCDICHKAFRRQD-HLRDH------RYIHSKEKPFKCQECGKGFCQS-RTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             HCCSCCCBCSSSCCBCSCHH-HHHHH------GGGSCCCCTTSCSSSCCCCSSH-HHHHHHHHHTTSCCCCCC
T ss_pred             cCCCCCcCCCCccchhCCHH-HHHHH------HHHhCCCCCeECCCcCCcccCH-HHHHHHHHHhCCCCCCcC
Confidence            67789999999999999998 99999      8899999999999999988777 999999999999999864

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=5.3e-16  Score=78.52  Aligned_cols=67  Identities=15%  Similarity=0.201  Sum_probs=60.1

Q ss_pred             CCCCCceeeCcccccccc-ccchhhhccchhhccCCCCCC-CcceeccCCCcccccChhHHHHHHHhhCCCCceecC
Q psy3483           1 MKSTELIVTCMYCSKILT-YETETIMNHCKFCKAVSRPTK-YQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCF   75 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~-~~~~~~~~h~~~~~~~~~~~~-~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~   75 (99)
                      +|+++++|.|..|++.|. ... .|..|      +..|.+ +++|.|.+|++.|... ..|..|++.|++++|....
T Consensus        18 ~h~~~~~~~C~~C~k~f~~~~~-~L~~H------~~~h~~~~~~~~C~~C~k~F~~~-~~L~~H~~~h~~~kp~~~~   86 (98)
T 2gqj_A           18 AIHERGEAVCPTCNVVTRKTLV-GLKKH------MEVCQKLQDALKCQHCRKQFKSK-AGLNYHTMAEHSAKPSDAE   86 (98)
T ss_dssp             TTTTTSCCCCTTTCCCCSSCSH-HHHHH------HHHHHHHHHHHSCSSSCCCCSCH-HHHHHHHHHHSCSCSSCCC
T ss_pred             HhccCCCcCCCCCCCChhhhHH-HHHHH------HHHHcCCCCCEECCCCCCccCCH-HHHHHHHHHHcCCCCCCCC
Confidence            578999999999999999 888 99999      788887 8899999999988777 9999999999999986544

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=1.1e-15  Score=72.04  Aligned_cols=60  Identities=23%  Similarity=0.403  Sum_probs=53.1

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCC-C-CCCcceeccCCCcccccChhHHHHHHHhhCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSR-P-TKYQRYVCCLCSKYRHSDASKMRSHIRTHTK   68 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~-~-~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~   68 (99)
                      +|++++||.|+.|++.|.... .|..|      +.. | .++++|.|+.|++.|... ..|..|++.+.+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~-~l~~H------~~~~H~~~~~~~~C~~C~k~f~~~-~~L~~H~~~~H~   65 (66)
T 2drp_A            4 TKEGEHTYRCKVCSRVYTHIS-NFCRH------YVTSHKRNVKVYPCPFCFKEFTRK-DNMTAHVKIIHK   65 (66)
T ss_dssp             EEEETTEEECTTTCCEESSHH-HHHHH------HHHHSSSSCCCEECTTTCCEESCH-HHHHHHHHHHTC
T ss_pred             ccCCCcceECCCCcchhCCHH-HHHHH------HHHHcCCCCcCeECCCCCCccCCH-HHHHHHHHHHcC
Confidence            478999999999999999998 89999      766 7 688999999999988777 999999988764

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=1.7e-15  Score=73.56  Aligned_cols=68  Identities=15%  Similarity=0.177  Sum_probs=58.4

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCC---CcceeccCCCcccccChhHHHHHH-HhhCCCCceecCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTK---YQRYVCCLCSKYRHSDASKMRSHI-RTHTKDRPYKCFY   76 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~---~~~~~c~~c~~~~~~~~~~~~~h~-~~~~~~~~~~C~~   76 (99)
                      .|+++++|.|..|++.|.... .|..|      +..|.+   +++|.|.+|++.|... ..|..|+ ..|.++++.....
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~-~L~~H------~~~h~~~~~~~~~~C~~C~k~f~~~-~~L~~H~~~~H~~~~~~~~~~   72 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKA-SLNWH------QRKHAETVAALRFPCEFCGKRFEKP-DSVAAHRSKSHPALLLAPQES   72 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHH-HHHHH------HHHHHHHTTTCCEECTTTCCEESSH-HHHHHHHHHTSTTTSSCCSSS
T ss_pred             CCCCCcCeECCCCCCeeCCHH-HHHHH------HHHhhccCCCcccCCCCCCchhCCH-HHHHHHHHHhCCCCCCCcccc
Confidence            589999999999999999998 99999      777775   7899999999988777 9999999 5688887765543

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.52  E-value=2e-14  Score=70.12  Aligned_cols=57  Identities=32%  Similarity=0.704  Sum_probs=53.2

Q ss_pred             ceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          42 RYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        42 ~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      ||.|.+|++.|... ..|..|+..|.++++|.|..|++.|.....|..|++.|++++|
T Consensus         1 ~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   57 (82)
T 2kmk_A            1 SFDCKICGKSFKRS-STLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP   57 (82)
T ss_dssp             CEECSSSCCEESSH-HHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCC
T ss_pred             CccCCCCcccccCc-hhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCC
Confidence            57899999987777 9999999999999999999999999999999999999998875

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.52  E-value=2.4e-14  Score=71.03  Aligned_cols=60  Identities=23%  Similarity=0.532  Sum_probs=54.0

Q ss_pred             CCcceecc--CCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          39 KYQRYVCC--LCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        39 ~~~~~~c~--~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      ++++|.|.  .|++.|... ..|..|++.|.++++|.|..|++.|.....|..|+++|++++|
T Consensus         1 ~~k~~~C~~~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   62 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQS-GSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP   62 (90)
T ss_dssp             --CCEECCSSSCCCEESSH-HHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCC
T ss_pred             CCCceECCCCCCCCccCCH-HHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            35789998  699987777 9999999999999999999999999999999999999998875

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.51  E-value=2.2e-14  Score=71.11  Aligned_cols=56  Identities=25%  Similarity=0.558  Sum_probs=51.8

Q ss_pred             CcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHHHHHhcC
Q psy3483          40 YQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS   96 (99)
Q Consensus        40 ~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~   96 (99)
                      +++|.|.+|++.|... ..|..|+++|++++||.|..|++.|.....|..|++.|++
T Consensus         1 ek~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~   56 (88)
T 1llm_C            1 MKPFQCRICMRNFSRS-DHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI   56 (88)
T ss_dssp             CCCEECTTTCCEESCH-HHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH
T ss_pred             CCCCcCCCCCCccCCH-HHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC
Confidence            4689999999988777 9999999999999999999999999999999999998864

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=1.7e-15  Score=76.44  Aligned_cols=63  Identities=19%  Similarity=0.273  Sum_probs=54.6

Q ss_pred             CCCCceeeCccccccc-cccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHH-HHhhCCCCcee
Q psy3483           2 KSTELIVTCMYCSKIL-TYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSH-IRTHTKDRPYK   73 (99)
Q Consensus         2 h~~~~~~~c~~c~~~f-~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h-~~~~~~~~~~~   73 (99)
                      |.++++|.|+.|++.| .... .|..|      +..| ++++|.|.+|++.|... ..|..| +.+|+++..+.
T Consensus        29 ~~~~~~~~C~~C~k~F~~~~~-~L~~H------~~~h-~~k~~~C~~Cgk~F~~~-~~L~~H~~~~H~~~p~~~   93 (96)
T 2ctd_A           29 IVDKGSVSCPTCQAVGRKTIE-GLKKH------MENC-KQEMFTCHHCGKQLRSL-AGMKYHVMANHNSLPSGP   93 (96)
T ss_dssp             HHHTSCEECTTTCSCEESSHH-HHHHH------HHHH-CCCCCCCSSSCCCCSSH-HHHHHHHHHHTCCCSSCS
T ss_pred             hcCCCCcCCCCCCCCcccCHH-HHHHH------HHHH-CCCCeECCCCCCeeCCH-HHHHHHhHHhcCCCCCCC
Confidence            4567899999999999 8888 99999      7888 89999999999988777 999999 89998764443

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=2.6e-15  Score=77.76  Aligned_cols=70  Identities=14%  Similarity=0.042  Sum_probs=62.5

Q ss_pred             hhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHh--hCCCCcee-cCCCCccc--cCchHHHHHHHHhcCC
Q psy3483          23 TIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRT--HTKDRPYK-CFYCDYRS--NERSNVKAHMIRRHSV   97 (99)
Q Consensus        23 ~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~--~~~~~~~~-C~~c~~~f--~~~~~l~~H~~~~~~~   97 (99)
                      .|..|      +..|+++++|.|.+|++.|... ..|..|++.  +.+++++. |..|++.|  .....|..|+++|+++
T Consensus         6 ~l~~H------~~~H~~~~~~~C~~C~k~f~~~-~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~   78 (115)
T 2dmi_A            6 SGKLY------GSIFTGASKFRCKDCSAAYDTL-VELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ   78 (115)
T ss_dssp             CCCCC------CCCCCCCCSEEBSSSSCEESSH-HHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCC
T ss_pred             hhhhh------eeeeCCCCCEECCccCchhcCH-HHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCC
Confidence            67788      8999999999999999988877 999999998  77777765 99999998  8999999999999988


Q ss_pred             CC
Q psy3483          98 KP   99 (99)
Q Consensus        98 kp   99 (99)
                      +|
T Consensus        79 ~~   80 (115)
T 2dmi_A           79 KV   80 (115)
T ss_dssp             SS
T ss_pred             cc
Confidence            76

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.49  E-value=2.6e-15  Score=68.70  Aligned_cols=56  Identities=21%  Similarity=0.434  Sum_probs=47.8

Q ss_pred             CCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhC
Q psy3483           4 TELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHT   67 (99)
Q Consensus         4 ~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~   67 (99)
                      |+++|.|+.|++.|.... .|..|      +..|+++++|.|++|++.|... ..|..|++.|.
T Consensus         1 g~~~~~C~~C~~~f~~~~-~l~~H------~~~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~hh   56 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNY-YLNIH------LRTHTGEKPYKCEFCEYAAAQK-TSLRYHLERHH   56 (57)
T ss_dssp             ----CBCTTTCCBCSCHH-HHHHH------HHHHHCCCCEECSSSSCEESSH-HHHHHHHHHHC
T ss_pred             CCCCccCCCCcchhCChH-HHHHH------HHHcCCCCCcCCCCCcchhCCH-HHHHHHHHHhc
Confidence            578999999999999998 99999      8889999999999999987777 99999998875

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=1.8e-14  Score=69.78  Aligned_cols=63  Identities=22%  Similarity=0.409  Sum_probs=53.6

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCC-CCCCC-cceeccCCCcccccChhHHHHHHHhh-CCCCc
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVS-RPTKY-QRYVCCLCSKYRHSDASKMRSHIRTH-TKDRP   71 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~-~~~~~-~~~~c~~c~~~~~~~~~~~~~h~~~~-~~~~~   71 (99)
                      +|++++||.|+.|++.|.... .|..|      +. .|.++ ++|.|.+|++.|... ..|..|++.+ ..+.|
T Consensus         9 ~H~~~k~~~C~~C~k~f~~~~-~L~~H------~~~~h~~~~~~~~C~~C~~~f~~~-~~L~~H~~~~H~~~~p   74 (77)
T 2ct1_A            9 THSGEKPYECYICHARFTQSG-TMKMH------ILQKHTENVAKFHCPHCDTVIARK-SDLGVHLRKQHSYSGP   74 (77)
T ss_dssp             CCSCCCSEECTTTCCEESCHH-HHHHH------HHHHSSSSCSSEECSSSSCEESSH-HHHHHHHHHTSCCSCC
T ss_pred             ccCCCCCeECCCcCchhCCHH-HHHHH------HHHhcCCCCCccCCCCCCCccCCH-HHHHHHHHHhCCCCCC
Confidence            589999999999999999998 99999      65 57765 899999999988777 9999999874 44444

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=6e-14  Score=70.28  Aligned_cols=56  Identities=11%  Similarity=0.103  Sum_probs=50.1

Q ss_pred             eeccCCCcccccChhHHHHHHHh-hCCCCc--------eecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          43 YVCCLCSKYRHSDASKMRSHIRT-HTKDRP--------YKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        43 ~~c~~c~~~~~~~~~~~~~h~~~-~~~~~~--------~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      +.|..|++.|... ..|..|++. |.++++        |.|..|++.|.....|..|+++|+|++|
T Consensus        26 ~~C~~C~k~f~~~-~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   90 (95)
T 2ej4_A           26 RPKKSCDRTFSTM-HELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKS   90 (95)
T ss_dssp             SSCCCCCCCCSSH-HHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCC
T ss_pred             CcccccccccCCH-HHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            5699999987776 899999998 888887        8999999999999999999999999886

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=7.2e-16  Score=73.79  Aligned_cols=61  Identities=11%  Similarity=0.177  Sum_probs=30.2

Q ss_pred             CCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483           2 KSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus         2 h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      |.++++|.|..|++.|.... .|..             +++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus        13 h~~~~~~~C~~C~k~f~~~~-~l~~-------------~~~~~C~~C~~~f~~~-~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           13 HLGDRSQKCSKCGIIFIRRS-TLSR-------------RKTPMCEKCRKDSCQE-AALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCCSEEECSSSCCEEECCC-CCCC-------------SSSCCCHHHHHTCSCC-CSSCCCSSCCCCCCCSSCCCC
T ss_pred             hCCCCCeeCCcccchhCCHH-HhCc-------------CCCCCCCCCChhhcCH-HHHHHHHHhhcCCCCCCCCCC
Confidence            44555555555555555443 2111             3445555555544444 555555555555555555544

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.47  E-value=1.3e-14  Score=66.33  Aligned_cols=56  Identities=14%  Similarity=0.392  Sum_probs=51.3

Q ss_pred             eeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCC
Q psy3483           7 IVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDR   70 (99)
Q Consensus         7 ~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~   70 (99)
                      ||.|+.|++.|.... .|..|      +..|.++++|.|+.|++.|... ..|..|+++|.+++
T Consensus         1 p~~C~~C~~~f~~~~-~l~~H------~~~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPS-MLKKH------IRTHTDVRPYHCTYCNFSFKTK-GNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHH-HHHHH------HHHTSSCCCEECSSSSCEESSH-HHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHH-HHHHH------HHhcCCCCCccCCCCCchhcCH-HHHHHHHHHhcccC
Confidence            689999999999998 99999      8889999999999999988777 99999999998765

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.6e-14  Score=72.38  Aligned_cols=62  Identities=18%  Similarity=0.166  Sum_probs=54.7

Q ss_pred             eeeCccccccccccchhhhccchhhccCCC-CCCCcc--------eeccCCCcccccChhHHHHHHHhhCCCCceecCC
Q psy3483           7 IVTCMYCSKILTYETETIMNHCKFCKAVSR-PTKYQR--------YVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFY   76 (99)
Q Consensus         7 ~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~-~~~~~~--------~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~   76 (99)
                      .++|..|++.|.... .|..|      +.. |.++++        |.|.+|++.|... ..|..|+++|++++||.|.+
T Consensus        25 ~~~C~~C~k~f~~~~-~L~~H------~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~   95 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMH-ELVTH------VTMEHVGGPEQNNHVCYWEECPREGKSFKAK-YKLVNHIRVHTGEKSGPSSG   95 (95)
T ss_dssp             SSSCCCCCCCCSSHH-HHHHH------HHHTTTCCTTCSCCCCCCTTCSSTTCCCSSH-HHHHHHHHHHHTCCCCSSCC
T ss_pred             CCcccccccccCCHH-HHHHH------HHHhccCCCCCCccceeccCCCCCCcccCCH-HHHHHHHHhcCCCCCCCCCC
Confidence            467999999999998 89999      765 888777        8999999988877 99999999999999999863

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.45  E-value=1e-13  Score=70.96  Aligned_cols=62  Identities=24%  Similarity=0.282  Sum_probs=56.0

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      +..|+++++|.|.+|++.|... ..|..|+..|  .++|.|..|++.|.....|..|++ |++++|
T Consensus         8 ~~~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~   69 (107)
T 1wjp_A            8 ASPVENKEVYQCRLCNAKLSSL-LEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKK   69 (107)
T ss_dssp             CCCCCCCCCCBCTTTCCBCSSH-HHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGG
T ss_pred             CcccCCCcCeECCCCCCccCCH-HHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCC
Confidence            6778999999999999987777 9999999998  479999999999999999999996 988765

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.43  E-value=3e-13  Score=64.54  Aligned_cols=59  Identities=24%  Similarity=0.595  Sum_probs=52.0

Q ss_pred             CCCCCCcceeccC--CCcccccChhHHHHHHHhhCCCCceecCC--CCccccCchHHHHHHHHh
Q psy3483          35 SRPTKYQRYVCCL--CSKYRHSDASKMRSHIRTHTKDRPYKCFY--CDYRSNERSNVKAHMIRR   94 (99)
Q Consensus        35 ~~~~~~~~~~c~~--c~~~~~~~~~~~~~h~~~~~~~~~~~C~~--c~~~f~~~~~l~~H~~~~   94 (99)
                      ......++|.|..  |++.|... ..|..|++.|++++||.|..  |++.|.....|..|+++|
T Consensus        10 ~~~~~~~~~~C~~~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           10 IDSSRIRSHICSHPGCGKTYFKS-SHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCCEECSSTTTCCEESSH-HHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CCccccCceeCCCCCCccccCCH-HHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            4456678899988  99988777 99999999999999999964  999999999999998765

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=6.1e-14  Score=64.71  Aligned_cols=56  Identities=18%  Similarity=0.422  Sum_probs=50.3

Q ss_pred             ceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHH-HhhCCC
Q psy3483           6 LIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHI-RTHTKD   69 (99)
Q Consensus         6 ~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~-~~~~~~   69 (99)
                      +||.|..|++.|.... .|..|      +..|+++++|.|..|++.|... ..|..|+ ..|.++
T Consensus         1 k~~~C~~C~~~f~~~~-~l~~H------~~~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQE-HLKRH------YRSHTNEKPYPCGLCNRAFTRR-DLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHH-HHHHH------HHTTTSSCSEECTTTCCEESSH-HHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHH-HHHHH------HHHhCCCCCccCCCCCCccCCH-HHHHHHHHHHcCCc
Confidence            5899999999999998 99999      8899999999999999988777 9999996 678765

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=1.9e-14  Score=68.90  Aligned_cols=59  Identities=20%  Similarity=0.439  Sum_probs=52.5

Q ss_pred             CCCCCceeeCc--cccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhC
Q psy3483           1 MKSTELIVTCM--YCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHT   67 (99)
Q Consensus         1 ~h~~~~~~~c~--~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~   67 (99)
                      +|+++++|.|+  .|++.|.... .|..|      +..|.++++|.|.+|++.|... ..|..|+++|+
T Consensus        13 ~~~~~~~~~C~~~~C~k~f~~~~-~l~~H------~~~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~Ht   73 (73)
T 1f2i_G           13 VVPKMRPYACPVESCDRRFSRSD-ELTRH------IRIHTGQKPFQCRICMRNFSRS-DHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCCEECSSTTBCCEESSHH-HHHHH------HHHHHCCCCEECTTTCCEESCH-HHHHHHHTTCC
T ss_pred             cCCCCCccCCcCCCCCCccCCHH-HHHHH------HHhhCCCCCeECCCCCchhCCH-HHHHHHHHhcC
Confidence            47889999997  5999999998 99999      7888999999999999988777 99999998774

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=8.7e-14  Score=65.48  Aligned_cols=59  Identities=19%  Similarity=0.317  Sum_probs=52.2

Q ss_pred             CCCceeeCccccccccccchhhhccchhhccCCCCCCCcceecc-CCCcccccChhHHHHHHHhhCCCCc
Q psy3483           3 STELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCC-LCSKYRHSDASKMRSHIRTHTKDRP   71 (99)
Q Consensus         3 ~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~-~c~~~~~~~~~~~~~h~~~~~~~~~   71 (99)
                      .+++||.|..|++.|. .. .|..|      +.. +++++|.|+ .|++.|... ..|..|+++|...++
T Consensus         6 C~~~~~~C~~C~k~f~-~~-~L~~H------~~~-~~~~p~~C~~~C~k~f~~~-~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FD-TIQSH------QYQ-CPRLPVACPNQCGVGTVAR-EDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HH-HHHHH------HHH-CSSSEEECTTCCSCCEEET-TTHHHHHHTTSSSCC
T ss_pred             CCCCCeeccccCCccC-HH-HHHHH------HHH-cCCcCccCCcccCcccccH-HHHHHHHHhhcccCc
Confidence            5789999999999999 77 89999      777 899999999 999988887 899999999876654

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.42  E-value=3.7e-13  Score=60.91  Aligned_cols=49  Identities=27%  Similarity=0.427  Sum_probs=41.5

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHH-hhCCCCceecCCCCccccC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIR-THTKDRPYKCFYCDYRSNE   83 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~-~~~~~~~~~C~~c~~~f~~   83 (99)
                      ...++++++|.|.+|++.|... ..|..|++ +|++++||.|..|++.|..
T Consensus         4 ~~~~~~~k~~~C~~C~k~f~~~-~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            4 GSSGSVGKPYICQSCGKGFSRP-DHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCCCSSCCEECSSSCCEESSH-HHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCCCeECCCCCcccCCH-HHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            4567788899999999987776 88999986 8999999999999998865

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.41  E-value=5.4e-13  Score=58.37  Aligned_cols=43  Identities=23%  Similarity=0.253  Sum_probs=39.0

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      ++.|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            4 GSSGTGEKPFKCVECGKGFSRR-SALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSBCCSSSCCCBSST-THHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCcccCccCcccCCH-HHHHHHHHHcCCCCCCCCCCC
Confidence            7888999999999999988887 899999999999999999876

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.41  E-value=6.8e-14  Score=63.38  Aligned_cols=43  Identities=21%  Similarity=0.363  Sum_probs=37.7

Q ss_pred             hHHHHHHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          57 SKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        57 ~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      ..+..|++.|++++||.|..|++.|....+|..|+++|+|++|
T Consensus        10 ~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   52 (54)
T 1yui_A           10 PGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             SCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSC
T ss_pred             cchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCC
Confidence            5566778889999999999999999999999999999999886

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=7e-13  Score=57.94  Aligned_cols=43  Identities=26%  Similarity=0.172  Sum_probs=38.3

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~-~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            4 GSSGTGEKPCKCTECGKAFCWK-SQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSEECSSSCCEESSS-HHHHHHHHHCCSCCCSCCCCC
T ss_pred             cccCCCCCCeeCCCCCCccCCH-HHHHHHHHHhCCCCCCCCCCC
Confidence            7788899999999999988877 899999999999999999876

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=5e-13  Score=58.42  Aligned_cols=43  Identities=23%  Similarity=0.203  Sum_probs=38.0

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            4 GSSGTGERPHKCNECGKSFIQS-AHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCCCSEECSSSCCEESSH-HHHHHHHHHHSCCCTTSSSCC
T ss_pred             cCCcCCCCCeeCCCCChhhCCH-HHHHHHHHHhCCCCCCCCCCC
Confidence            7788899999999999987776 899999999999999999876

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=5.2e-13  Score=58.40  Aligned_cols=43  Identities=23%  Similarity=0.305  Sum_probs=37.5

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      ++.|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            4 GSSGTGEKPYECSVCGKAFSHR-QSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSEECSSSCCEESSH-HHHHHHHGGGSSCCCSCSSCC
T ss_pred             cCCcCCCCCeeCCCcCCccCCH-HHHHHHHHHhcCCCCCCCCCC
Confidence            7788889999999999987776 889999999999999999876

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=6e-13  Score=58.20  Aligned_cols=43  Identities=28%  Similarity=0.338  Sum_probs=38.2

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            4 GSSGSGEKPYKCSECGKAFHRH-THLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCSEECSSSCCEESSH-HHHHHHHHHHTCCCSSCSSCC
T ss_pred             ccccCCCcCeECCCCCCeeCCh-HHHHHHHHHcCCCCCCCCCCC
Confidence            7788899999999999987776 899999999999999999876

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=5.5e-13  Score=57.79  Aligned_cols=43  Identities=23%  Similarity=0.301  Sum_probs=35.7

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      ++.|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            2 SSGSSGEKPFGCSCCEKAFSSK-SYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCSSCCCEECSSSSCEESSH-HHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCcCCCcCccCCCCCcccCCH-HHHHHHHHHhCCCCCCCCCCC
Confidence            5677888888888888877766 888888888888888888876

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.38  E-value=5.8e-13  Score=58.26  Aligned_cols=43  Identities=26%  Similarity=0.288  Sum_probs=37.8

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~-~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            4 GSSGTGEKPYECKECGKAFSQT-THLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCSCBCSSSCCBCSCH-HHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCccCCCCceECCCCCchhCCH-HHHHHHHHHcCCCCCCCCCCC
Confidence            7788889999999999987776 889999999999999999876

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=4.9e-13  Score=58.46  Aligned_cols=43  Identities=28%  Similarity=0.299  Sum_probs=38.2

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~-~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            4 GSSGTGEKPYKCNECGKVFTQN-SHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             SSCCCCCCSSEETTTTEECSSH-HHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCeECCCcChhhCCH-HHHHHHHHHcCCCCCCCCCCC
Confidence            7788999999999999987776 899999999999999999876

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=5.7e-13  Score=58.26  Aligned_cols=43  Identities=26%  Similarity=0.356  Sum_probs=36.9

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|.+|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            4 GSSGTGEKPYECSICGKSFTKK-SQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCSSCCCSEECSSSCCEESSH-HHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCcCcCCCCCCcccCCH-HHHHHHHHHhCCCCCCCCCCC
Confidence            6778888899999999877776 889999999999999998876

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=6.3e-13  Score=58.13  Aligned_cols=43  Identities=28%  Similarity=0.295  Sum_probs=37.9

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~-~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            4 GSSGTGENPYECHECGKAFSRK-YQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCEECSSSCCEESSH-HHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCcCcCCCCCCcccCcH-HHHHHHHHHcCCCCCCCCCCC
Confidence            7788889999999999987776 889999999999999999876

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=1.5e-15  Score=72.71  Aligned_cols=63  Identities=11%  Similarity=0.092  Sum_probs=55.6

Q ss_pred             hhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          23 TIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        23 ~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      .|..|      +..|.++++|.|.+|++.|... ..|..       +++|.|..|++.|.....|..|+++|++++|
T Consensus         5 ~l~~H------~~~h~~~~~~~C~~C~k~f~~~-~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~   67 (73)
T 2ctu_A            5 SSGKR------QKIHLGDRSQKCSKCGIIFIRR-STLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKT   67 (73)
T ss_dssp             SCCCC------CCCCCCCSEEECSSSCCEEECC-CCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCC
T ss_pred             hHHHH------HHHhCCCCCeeCCcccchhCCH-HHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCC
Confidence            67788      8899999999999999987766 55443       7899999999999999999999999999876

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=6.8e-13  Score=57.98  Aligned_cols=43  Identities=28%  Similarity=0.271  Sum_probs=38.3

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            4 GSSGTGEKPYKCSDCGKSFTWK-SRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSCBCSSSCCBCSSH-HHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCccCCccChhhCCH-HHHHHHHHhcCCCCCCCCCCC
Confidence            7788899999999999987776 899999999999999999876

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.38  E-value=6.2e-13  Score=58.17  Aligned_cols=43  Identities=23%  Similarity=0.325  Sum_probs=37.3

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      ++.|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            4 GSSGAGVNPYKCSQCEKSFSGK-LRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCSEECSSSSCEESSH-HHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCeECCCCCcccCCH-HHHHHHHHHcCCCCCCCCCCC
Confidence            7788888999999999977776 889999999999999998876

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=6e-13  Score=58.19  Aligned_cols=43  Identities=23%  Similarity=0.298  Sum_probs=37.6

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|++|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            4 GSSGTGEKPFKCDICGKSFCGR-SRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCSCCCSSSCCCCSSH-HHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCcCCCcCCchhCCH-HHHHHHHHHcCCCCCCCCCCC
Confidence            7788888999999999987776 889999999999999999876

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=5e-13  Score=58.44  Aligned_cols=43  Identities=26%  Similarity=0.291  Sum_probs=36.6

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~-~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            4 GSSGTGKKPYKCNECGKVFTQN-SHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCSSCBCTTTCCBCSSH-HHHHHHGGGTSCCCCCSCCCC
T ss_pred             CcCCCCCcCeECCCCCCeeCCH-HHHHHHhhhcCCCCCCCCCCC
Confidence            6778888889999999877766 888889888999999988876

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.38  E-value=7.6e-13  Score=64.76  Aligned_cols=54  Identities=31%  Similarity=0.532  Sum_probs=50.1

Q ss_pred             ceec--cCCCcccccChhHHHHHHHhhCCCCceecCC--CCccccCchHHHHHHHHhcC
Q psy3483          42 RYVC--CLCSKYRHSDASKMRSHIRTHTKDRPYKCFY--CDYRSNERSNVKAHMIRRHS   96 (99)
Q Consensus        42 ~~~c--~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~--c~~~f~~~~~l~~H~~~~~~   96 (99)
                      ||.|  ..|++.|... ..|..|++.|.++++|.|..  |++.|.....|..|+++|++
T Consensus         1 p~~C~~~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   58 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKH-NQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG   58 (85)
T ss_dssp             CEECCSTTCCCEESSH-HHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS
T ss_pred             CccCCCCCCCcccCCH-HHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence            5789  9999987777 99999999999999999988  99999999999999999976

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=5.8e-13  Score=58.23  Aligned_cols=43  Identities=26%  Similarity=0.339  Sum_probs=37.6

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            4 GSSGSGEKPYKCNECGKVFTQN-SHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCSEECSSSCCEESSH-HHHHHHHHHHSSSSCSSCCCC
T ss_pred             cccCCCCCCEeCCcCCCccCCH-HHHHHHHHHHCCCCCCCCCCC
Confidence            7788889999999999987776 889999999999999999876

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=5.1e-13  Score=58.46  Aligned_cols=43  Identities=19%  Similarity=0.165  Sum_probs=37.2

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      ++.|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~-~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            4 GSSGSVEKPYKCEDCGKGYNRR-LNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CSCCCCCSSCBCSSSCCBCSSH-HHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCeeCcccCchhCCH-HHHHHHHHhcCCCCCCCCCCC
Confidence            7788888999999999977776 889999999999999998876

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.37  E-value=5.6e-13  Score=58.28  Aligned_cols=43  Identities=28%  Similarity=0.373  Sum_probs=37.0

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            4 GSSGTGEKRYKCNECGKVFSRN-SQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSCCEECSSSCCEESSH-HHHHHHHTGGGCCCCCSSSCC
T ss_pred             ccCCCCCcCcCCCCCcchhCCH-HHHHHHHHhcCCCCCCCCCCC
Confidence            7788888899999999877776 889999999999999998876

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.37  E-value=4.3e-13  Score=58.65  Aligned_cols=43  Identities=28%  Similarity=0.287  Sum_probs=36.1

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            4 GSSGTGVKPYGCSQCAKTFSLK-SQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCSEECSSSSCEESSH-HHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccCCCCCCceECCCCCchhCCH-HHHHHHHHHhCCCCCCCCCCC
Confidence            6778888888888888877766 888888888888888888876

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=6e-13  Score=58.15  Aligned_cols=43  Identities=23%  Similarity=0.215  Sum_probs=37.7

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            4 GSSGTGEKLYNCKECGKSFSRA-PCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCCBTTTTBCCSCH-HHHHHHHHHCCSSSCCCCCCC
T ss_pred             cccCCCCCCeECCCCCCccCch-HHHHHHHHhcCCCCCCCCCCC
Confidence            7788889999999999987776 889999999999999999876

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=5.2e-13  Score=58.41  Aligned_cols=43  Identities=21%  Similarity=0.228  Sum_probs=37.0

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            4 GSSGSSTKSHQCHECGRGFTLK-SHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCSEECSSSCCEESSH-HHHHHHHTTTSCSCCSSCCCC
T ss_pred             cCCCCCCCCeECCcCCCccCCH-HHHHHHHHHhCCCCCCCCCCC
Confidence            7788888899999999877776 889999999999999998876

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.37  E-value=1.1e-12  Score=64.75  Aligned_cols=59  Identities=25%  Similarity=0.599  Sum_probs=53.7

Q ss_pred             CcceeccC--CCcccccChhHHHHHHHhhCCCCceecC--CCCccccCchHHHHHHHHhcCCCC
Q psy3483          40 YQRYVCCL--CSKYRHSDASKMRSHIRTHTKDRPYKCF--YCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        40 ~~~~~c~~--c~~~~~~~~~~~~~h~~~~~~~~~~~C~--~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      ..+|.|..  |++.|... ..|..|+..|.++++|.|.  .|++.|.....|..|++.|++++|
T Consensus         3 ~~~~~C~~~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~   65 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKS-SHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP   65 (89)
T ss_dssp             CCCEECCSTTTCCEESSH-HHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCC
T ss_pred             CCCeeCCCCCCCCcCCCH-HHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCC
Confidence            35688999  99988777 9999999999999999997  699999999999999999999875

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=5.8e-13  Score=58.25  Aligned_cols=43  Identities=28%  Similarity=0.315  Sum_probs=38.0

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            4 GSSGTGEKPYKCNECGKVFTQN-SHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSEECSSSCCEESSS-HHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCCCCCCCeECCcCCchhCCH-HHHHHHHHhcCCCCCCCCCCC
Confidence            7788899999999999988877 889999999999999999876

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=7.2e-13  Score=57.91  Aligned_cols=43  Identities=26%  Similarity=0.314  Sum_probs=37.5

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|++|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            4 GSSGSGEKPYVCDYCGKAFGLS-AELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCTTCCCCSEECSSSCCEESSH-HHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCeECCCCChhhCCH-HHHHHHHHhcCCCCCCCCCCC
Confidence            7788888999999999987776 889999999999999999876

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=5.9e-13  Score=58.21  Aligned_cols=43  Identities=28%  Similarity=0.320  Sum_probs=36.5

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      ++.|+++++|.|++|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            4 GSSGTGEKPYKCNECGKVFRHN-SYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSSEECSSSCCEESSH-HHHHHHHTTTCCCCCCSCCCC
T ss_pred             ccCCCCCCCeECCCCCchhCCh-HHHHHHHhhcCCCCCCCCCCC
Confidence            6778888888999999877766 888888888888888888876

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=8.1e-13  Score=57.77  Aligned_cols=43  Identities=12%  Similarity=0.033  Sum_probs=38.0

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            4 GSSGSREKSHQCRECGEIFFQY-VSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCEECTTTCCEESSH-HHHHHHHHHHSCCSCCCTTCC
T ss_pred             ccccCCCCCEEccccChhhCCH-HHHHHHHHHhCCCCCCCCCCC
Confidence            7788899999999999987776 889999999999999999876

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=5.2e-13  Score=58.43  Aligned_cols=43  Identities=19%  Similarity=0.237  Sum_probs=37.3

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|++|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~-~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            4 GSSGSGERPYGCNECGKNFGRH-SHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCEECSSSCCEESSH-HHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCEEccccCcccCCH-HHHHHHHHHHcCCCCCCCCCC
Confidence            7788888999999999987776 889999999999999998876

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.37  E-value=5.3e-13  Score=58.37  Aligned_cols=43  Identities=19%  Similarity=0.209  Sum_probs=36.8

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      ++.|+++++|.|++|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~-~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            4 GSSGMGEKTWKCRECDMCFSQA-SSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCCCCSSSCCCCSSH-HHHHHHGGGGSSSSCSCSSCC
T ss_pred             cCccCCCcCeECCCCCcccCCH-HHHHHHHHHcCCCCCcCCCCC
Confidence            7778888889999999877776 888899988999999988876

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=5.3e-13  Score=58.37  Aligned_cols=43  Identities=26%  Similarity=0.277  Sum_probs=37.3

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            4 GSSGTGVKPYMCNECGKAFSVY-SSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCCCSEECSSSCCEESCH-HHHHHHHHHHHCCSCCSCCCC
T ss_pred             ccccCCCcCeECCCCCchhCCH-HHHHHHHHHcCCCCCCCCCCC
Confidence            7788888999999999977776 889999999999999998876

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=8.2e-13  Score=57.74  Aligned_cols=43  Identities=23%  Similarity=0.265  Sum_probs=37.6

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      ++.|+++++|.|.+|++.|... ..|..|++.|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            4 GSSGSGEKPFKCEECGKGFYTN-SQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCCCCSEECSSSCCEESSH-HHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCcCCCh-HHHHHHHHHhCCCCCCCCCCC
Confidence            7788889999999999987776 889999999999999999876

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=6.3e-13  Score=58.12  Aligned_cols=43  Identities=26%  Similarity=0.288  Sum_probs=35.8

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~-~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            4 GSSGTGEKPYKCHECGKVFRRN-SHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCEECTTTCCEESSH-HHHHHHHTTTCCCCCSCCSCC
T ss_pred             CcCCCCCCCeECCCCCchhCCH-HHHHHHHHHcCCCCCCCCCCC
Confidence            6778888888888888877766 888888888888888888876

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=8.1e-13  Score=57.76  Aligned_cols=43  Identities=28%  Similarity=0.339  Sum_probs=36.6

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            4 GSSGTGEKPYICAECGKAFTIR-SNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SCTTSSCCSEECSSSCCEESSH-HHHHHHHHHTSCCCCSSCSCC
T ss_pred             ccCCCCCcCeECCCCChhhCCH-HHHHHHHHHcCCCCCCCCCCC
Confidence            6778888889999999877766 888899989999999988865

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=6.9e-13  Score=57.98  Aligned_cols=43  Identities=23%  Similarity=0.243  Sum_probs=36.7

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      ++.|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            4 GSSGTGEKPFDCIDCGKAFSDH-IGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCSBCCTTTCCCBSSH-HHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCcCCCCCeECCCCCceeCCH-HHHHHHHHHhCCCCCCCCCCC
Confidence            7788888889999999877766 888889988998999988876

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=5.7e-13  Score=58.26  Aligned_cols=43  Identities=23%  Similarity=0.205  Sum_probs=36.5

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            4 GSSGTGEKPYKCEECGKGFICR-RDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSCCCSEECSSSCCEESCH-HHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCcCccCCCccchhCCH-HHHHHHHHHhCCCCCCCCCCC
Confidence            6778888889999999877766 888889888988899988876

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=6.3e-13  Score=58.09  Aligned_cols=43  Identities=26%  Similarity=0.192  Sum_probs=36.3

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            4 GSSGTGEKPHECRECGKSFSFN-SQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSCBCTTTCCBCSSH-HHHHHHHTTTTTSCCSCCCCC
T ss_pred             ccccCCCCCeeCCCCCchhCCH-HHHHHHHHHcCCCCCCCCCCC
Confidence            6778888888899998877766 888888888888888888876

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=5.7e-13  Score=58.25  Aligned_cols=43  Identities=30%  Similarity=0.329  Sum_probs=37.2

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      ++.|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            4 GSSGTGEKPYKCNECGKAFSQT-SKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSSCCTTCCTTTCCCCSSH-HHHHHHHTTTTTCSCCCSCCC
T ss_pred             CcCCCCCcCcCCCCCCCccCCH-HHHHHHHHhcCCCCCCCCCCC
Confidence            7788888999999999977776 889999999999999998876

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=5.5e-13  Score=58.34  Aligned_cols=43  Identities=23%  Similarity=0.273  Sum_probs=35.0

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      ++.|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~-~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            4 GSSGTGGKHFECTECGKAFTRK-STLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSSSSCCEECSSSCCEESCH-HHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccCCCCCeECCCCCchhCCH-HHHHHHHHHhCCCCCCCCCCC
Confidence            6778888888888888877666 888888888888888888765

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=7.6e-13  Score=57.86  Aligned_cols=43  Identities=28%  Similarity=0.312  Sum_probs=38.3

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            4 GSSGSGEKPYGCNECGKTFSQK-SILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCEEETTTTEEESSH-HHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCccCCCcCeECCCCCcccCch-HHHHHHHHHcCCCCCCCCCCC
Confidence            7788999999999999987776 899999999999999999876

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=7e-13  Score=57.94  Aligned_cols=43  Identities=21%  Similarity=0.103  Sum_probs=36.4

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|++|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            4 GSSGSGEKSHTCDECGKNFCYI-SALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSEECTTTCCEESSH-HHHHHHHTTTCCSCSSCCSCC
T ss_pred             cccCCCCCCeECCCcCcccCCH-HHHHHHHHHhCCCCCCCCCCC
Confidence            6778888888999998877766 888888888888888888876

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=5.2e-13  Score=58.39  Aligned_cols=43  Identities=23%  Similarity=0.295  Sum_probs=36.3

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|++|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            4 GSSGTGEKPFKCGECGKSYNQR-VHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSEECTTTCCEESSS-HHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCeECCCCCcccCCH-HHHHHHHHHcCCCCCCCCCCC
Confidence            6778888888888888887777 888888888888888888876

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=7.9e-13  Score=57.82  Aligned_cols=43  Identities=21%  Similarity=0.189  Sum_probs=37.8

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      ++.|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            4 GSSGSGEKPYKCVECGKGYKRR-LDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSEECSSSCCEESSH-HHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCeECcccCchhCCH-HHHHHHHHHHcCCCCCCCCCC
Confidence            7788889999999999987776 889999999999999999876

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=6.1e-13  Score=58.17  Aligned_cols=43  Identities=26%  Similarity=0.366  Sum_probs=37.0

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~-~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            4 GSSGTGERPYICTVCGKAFTDR-SNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSCCCSEECTTTCCEESSH-HHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCcCCCCCCchhCCH-HHHHHHHHhcCCCCCCCCCCC
Confidence            7778888899999999877776 889999999999999998876

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=7.5e-13  Score=57.90  Aligned_cols=43  Identities=28%  Similarity=0.319  Sum_probs=35.8

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            4 GSSGAGEKPYGCSECGKAFSSK-SYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             SSCSSCCCSCBCSSSCCBCSCH-HHHHHHHTTTCCSCSSCCCCC
T ss_pred             CcCcCCCCCcCCCccChhhCCh-HHHHHHHHHhCCCCCCCCCCC
Confidence            6778888888888888877766 888888888888888888876

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.36  E-value=7.7e-13  Score=57.81  Aligned_cols=43  Identities=26%  Similarity=0.237  Sum_probs=36.9

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      ++.|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            4 GSSGTGEKPYNCKECGKSFRWA-SCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSEECSSSCCEESSH-HHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCcCeECCccccccCCh-HHHHHHHHHhCCCCCCCCCCC
Confidence            6778888899999999877776 888899989999999988876

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=5.7e-13  Score=58.25  Aligned_cols=43  Identities=28%  Similarity=0.293  Sum_probs=36.5

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      ++.|+++++|.|++|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            4 GSSGTGEKPYKCEKCGKGYNSK-FNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSEEETTTTEEESCH-HHHHHHHTTSCSCCSSCCSCC
T ss_pred             CcCCCCCCCeECCCCCCccCCH-HHHHHHHHhhCCCCCCCCCCC
Confidence            6778888889999999877766 888889888888889888876

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.35  E-value=2.2e-13  Score=63.39  Aligned_cols=50  Identities=14%  Similarity=0.318  Sum_probs=42.1

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHH
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNV   87 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l   87 (99)
                      +..|+++++|.|+.|++.|... ..|.   .+|++++||.|..|++.|....++
T Consensus         6 ~~~H~~~k~~~C~~C~k~F~~~-~~l~---~~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            6 ERDSTNRASFKCPVCSSTFTDL-EANQ---LFDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             SSSCCSSSEEECSSSCCEEEHH-HHHH---HEETTTTEEBCSSSCCBCEECTTC
T ss_pred             HHHcCCCCCccCCCCCchhccH-HHhH---hhcCCCCCEECCCCCCccccCccc
Confidence            7889999999999999977655 5554   789999999999999999877654

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=6.8e-13  Score=58.02  Aligned_cols=43  Identities=26%  Similarity=0.330  Sum_probs=36.8

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            4 GSSGSGEKPFKCEECGKRFTQN-SQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             TTCCCCCCSEEETTTTEEESSH-HHHHHHGGGGSCCCCSCCCCC
T ss_pred             ccCCCCCCCeeCCCCCcccCCH-HHHHHHHHHcCCCCCCCCCCC
Confidence            6778888889999999877776 888999989999999988876

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=7.5e-13  Score=57.93  Aligned_cols=43  Identities=30%  Similarity=0.296  Sum_probs=37.7

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            4 GSSGTGEKPYKCMECGKAFGDN-SSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSSSBTTTTBCCSSH-HHHHHHHHHHHSCCCCCCCCC
T ss_pred             CcCCCCCCCcCCCCCCchhCCH-HHHHHHHHHcCCCCCCCCCCC
Confidence            7788889999999999987776 889999999999999999876

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.35  E-value=4e-13  Score=60.83  Aligned_cols=46  Identities=15%  Similarity=0.148  Sum_probs=41.7

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCC-CCCCCcceeccCCCcccc
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVS-RPTKYQRYVCCLCSKYRH   53 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~-~~~~~~~~~c~~c~~~~~   53 (99)
                      .|++++||.|+.|++.|.... .|..|      +. .|+++++|.|.+|++.|.
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~-~L~~H------~~~~H~~~k~~~C~~C~k~F~   52 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPD-HLNGH------IKQVHTSERPHKCQVWVSGPS   52 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHH-HHHHH------HHHTSCCCCCCCSSSSCCSSC
T ss_pred             CCCCCCCeECCCCCcccCCHH-HHHHH------HHHhcCCCCCccCCCCCCCCC
Confidence            367899999999999999998 99999      76 899999999999999764

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.34  E-value=6.7e-12  Score=63.16  Aligned_cols=61  Identities=33%  Similarity=0.676  Sum_probs=54.7

Q ss_pred             CCCcceeccC--CCcccccChhHHHHHHHhhCCCCceecC--CCCccccCchHHHHHHHHhcCCCC
Q psy3483          38 TKYQRYVCCL--CSKYRHSDASKMRSHIRTHTKDRPYKCF--YCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        38 ~~~~~~~c~~--c~~~~~~~~~~~~~h~~~~~~~~~~~C~--~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      ...++|.|..  |++.|... ..|..|++.|.++++|.|.  .|++.|.....|..|+++|++++|
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~   75 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKS-SHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP   75 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCH-HHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCS
T ss_pred             ccCcceEcCCCCCCCcccCH-HHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            3456799996  99988777 9999999999999999996  699999999999999999999875

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.1e-13  Score=58.78  Aligned_cols=41  Identities=17%  Similarity=0.088  Sum_probs=38.3

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|++++||.|+.|++.|.... .|..|      +..|+++++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~-~L~~H------~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            6 SGTGGKHFECTECGKAFTRKS-TLSMH------QKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSSSCCEECSSSCCEESCHH-HHHHH------GGGTSCSSCSCCCCC
T ss_pred             ccCCCCCeECCCCCchhCCHH-HHHHH------HHHhCCCCCCCCCCC
Confidence            588999999999999999998 99999      899999999999876

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.5e-13  Score=58.59  Aligned_cols=41  Identities=15%  Similarity=0.085  Sum_probs=38.4

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|++++||.|+.|++.|.... .|..|      +..|+++++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~-~L~~H------~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            6 SGTGEKPYKCNECGKVFRHNS-YLSRH------QRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSSSEECSSSCCEESSHH-HHHHH------HTTTCCCCCCSCCCC
T ss_pred             CCCCCCCeECCCCCchhCChH-HHHHH------HhhcCCCCCCCCCCC
Confidence            588999999999999999998 99999      899999999999887

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.33  E-value=4.3e-13  Score=58.65  Aligned_cols=41  Identities=12%  Similarity=0.113  Sum_probs=38.4

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|++++||.|+.|++.|.... .|..|      +..|+++++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~-~L~~H------~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            6 SGTGVKPYGCSQCAKTFSLKS-QLIVH------QRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSEECSSSSCEESSHH-HHHHH------GGGSSSCCCSCCTTC
T ss_pred             CCCCCCceECCCCCchhCCHH-HHHHH------HHHhCCCCCCCCCCC
Confidence            588999999999999999998 99999      899999999999886

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=5e-13  Score=58.46  Aligned_cols=41  Identities=15%  Similarity=0.099  Sum_probs=38.4

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|++++||.|+.|++.|.... .|..|      +..|+++++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~-~L~~H------~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            6 SGTGEKPYKCHECGKVFRRNS-HLARH------QLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CTTCCCCEECTTTCCEESSHH-HHHHH------HTTTCCCCCSCCSCC
T ss_pred             CCCCCCCeECCCCCchhCCHH-HHHHH------HHHcCCCCCCCCCCC
Confidence            588999999999999999999 99999      899999999999886

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4.3e-13  Score=58.66  Aligned_cols=41  Identities=15%  Similarity=0.111  Sum_probs=38.4

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|+++++|.|+.|++.|.... .|..|      +..|+++++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~-~L~~H------~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            6 SGTGKKPYKCNECGKVFTQNS-HLARH------RGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCSSCBCTTTCCBCSSHH-HHHHH------GGGTSCCCCCSCCCC
T ss_pred             CCCCCcCeECCCCCCeeCCHH-HHHHH------hhhcCCCCCCCCCCC
Confidence            588999999999999999998 99999      899999999999886

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.4e-12  Score=56.96  Aligned_cols=43  Identities=26%  Similarity=0.303  Sum_probs=34.6

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            4 GSSGTGEKPYRCAECGKAFTDR-SNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSSCCCSEECSSSCCEESSH-HHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCeECCCCCchhCCH-HHHHHHHHHcCCCCCCCCCCC
Confidence            6778888888888888877766 888888888888888888754

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.5e-12  Score=57.05  Aligned_cols=43  Identities=26%  Similarity=0.287  Sum_probs=36.2

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHH-hhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIR-THTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~-~~~~~~~~~C~~c   77 (99)
                      ++.|+++++|.|.+|++.|... ..|..|++ +|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~-~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            4 GSSGTGKKPYECIECGKAFIQN-TSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCSBCCSSSCCCBSSH-HHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccCCCCCEECCccCchhCCh-HHHHHHhHhhcCCCCCCCCCCC
Confidence            6778888888888888877766 88888888 8888888888876

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=5.4e-13  Score=58.36  Aligned_cols=41  Identities=12%  Similarity=0.107  Sum_probs=38.4

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|+++++|.|+.|++.|.... .|..|      +..|+++++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~-~L~~H------~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            6 SGAGEKPYGCSECGKAFSSKS-YLIIH------MRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSCBCSSSCCBCSCHH-HHHHH------HTTTCCSCSSCCCCC
T ss_pred             CcCCCCCcCCCccChhhCChH-HHHHH------HHHhCCCCCCCCCCC
Confidence            589999999999999999998 99999      899999999999886

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.33  E-value=1.9e-12  Score=56.35  Aligned_cols=43  Identities=19%  Similarity=0.278  Sum_probs=36.3

Q ss_pred             CCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCC
Q psy3483          35 SRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCD   78 (99)
Q Consensus        35 ~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~   78 (99)
                      ..|+++++|.|.+|++.|... ..|..|+++|+++++|.|+.||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~-~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRK-DRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCH-HHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCH-HHHHHHHHHccCCCCCCCcCCC
Confidence            467888889999999877666 8889999999999999998885

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.6e-12  Score=56.83  Aligned_cols=43  Identities=28%  Similarity=0.315  Sum_probs=34.5

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYG-SSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSH-HHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCeeCcccCcccCCh-HHHHHHHHHhCCCCCCCCCCC
Confidence            5677888888888888877666 888888888888888888766

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=5.9e-13  Score=58.21  Aligned_cols=41  Identities=15%  Similarity=0.048  Sum_probs=38.4

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|+++++|.|+.|++.|.... .|..|      +..|+++++|.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~-~L~~H------~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            6 SGTGEKPFKCGECGKSYNQRV-HLTQH------QRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCSEECTTTCCEESSSH-HHHTT------GGGGSSCCSSCSCCC
T ss_pred             CCCCCCCeECCCCCcccCCHH-HHHHH------HHHcCCCCCCCCCCC
Confidence            588999999999999999998 99999      899999999999887

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=4.6e-13  Score=58.56  Aligned_cols=41  Identities=17%  Similarity=0.091  Sum_probs=38.4

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|++++||.|+.|++.|.... .|..|      +..|+++++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~-~L~~H------~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            6 SGTGEKPYECSICGKSFTKKS-QLHVH------QQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSEECSSSCCEESSHH-HHHHH------HHTTSSCCSCCSCCC
T ss_pred             CCCCCcCcCCCCCCcccCCHH-HHHHH------HHHhCCCCCCCCCCC
Confidence            588999999999999999999 99999      899999999999876

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=6.2e-13  Score=55.48  Aligned_cols=36  Identities=22%  Similarity=0.449  Sum_probs=32.9

Q ss_pred             HhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          64 RTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        64 ~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      ++|++++||.|..|++.|....+|..|+++|++++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            357889999999999999999999999999999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=6.3e-13  Score=58.14  Aligned_cols=41  Identities=15%  Similarity=0.074  Sum_probs=38.4

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|+++++|.|+.|++.|.... .|..|      +..|+++++|.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~-~L~~H------~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            6 SGSSTKSHQCHECGRGFTLKS-HLNQH------QRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSEECSSSCCEESSHH-HHHHH------HTTTSCSCCSSCCCC
T ss_pred             CCCCCCCeECCcCCCccCCHH-HHHHH------HHHhCCCCCCCCCCC
Confidence            588999999999999999998 99999      899999999999887

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=5.9e-13  Score=58.23  Aligned_cols=41  Identities=15%  Similarity=0.087  Sum_probs=38.4

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|++++||.|+.|++.|.... .|..|      +..|+++++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~-~L~~H------~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            6 SGTGEKPFDCIDCGKAFSDHI-GLNQH------RRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCCSBCCTTTCCCBSSHH-HHHHH------HTTTTTCCCCSSCCC
T ss_pred             CcCCCCCeECCCCCceeCCHH-HHHHH------HHHhCCCCCCCCCCC
Confidence            588999999999999999998 99999      899999999999876

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=8.1e-13  Score=57.80  Aligned_cols=44  Identities=23%  Similarity=0.304  Sum_probs=37.3

Q ss_pred             cCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          33 AVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        33 ~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +++.|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGS-YRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSH-HHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCH-HHHHHHHHHcCCCCCCCCCCC
Confidence            36778888899999999877776 889999999999999998876

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=6.8e-13  Score=57.98  Aligned_cols=41  Identities=20%  Similarity=0.065  Sum_probs=38.3

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|++++||.|+.|++.|.... .|..|      +..|+++++|.|+.|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~-~L~~H------~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            6 SGSGEKSHTCDECGKNFCYIS-ALRIH------QRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCSSEECTTTCCEESSHH-HHHHH------HTTTCCSCSSCCSCC
T ss_pred             cCCCCCCeECCCcCcccCCHH-HHHHH------HHHhCCCCCCCCCCC
Confidence            588999999999999999998 99999      899999999999876

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.32  E-value=5.8e-13  Score=57.12  Aligned_cols=40  Identities=25%  Similarity=0.363  Sum_probs=25.9

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceec
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC   74 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C   74 (99)
                      ++.|+++++|.|.+|++.|... ..|..|+++|++++||.|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            2 SSGSSGENPYECSECGKAFNRK-DQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             CSSSSSCCSEECSSSCCEESSH-HHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCCCCCccCCCcChhhCCH-HHHHHHHHhcCCCCCCCC
Confidence            4556666666666666665555 666666666666666665

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=5.8e-13  Score=58.20  Aligned_cols=41  Identities=15%  Similarity=0.134  Sum_probs=38.3

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|++++||.|+.|++.|.... .|..|      +..|+++++|.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~-~L~~H------~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            6 SGTGEKPHECRECGKSFSFNS-QLIVH------QRIHTGENPSGPSSG   46 (46)
T ss_dssp             SCCCCCSCBCTTTCCBCSSHH-HHHHH------HTTTTTSCCSCCCCC
T ss_pred             ccCCCCCeeCCCCCchhCCHH-HHHHH------HHHcCCCCCCCCCCC
Confidence            588999999999999999998 99999      899999999999876

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.32  E-value=1.9e-12  Score=57.16  Aligned_cols=44  Identities=18%  Similarity=0.317  Sum_probs=34.1

Q ss_pred             CCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCc
Q psy3483          35 SRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDY   79 (99)
Q Consensus        35 ~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~   79 (99)
                      ..+.++++|.|.+|++.|... ..|..|+++|++++||.|..|++
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            5 SSGRTRKQVACEICGKIFRDV-YHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             SCCCCCCSEEETTTTEEESSH-HHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCCcCeeCCCCCcccCCH-HHHHHHHHhcCCCCCccCCCCCC
Confidence            456677788888888876666 78888888888888888888874

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=5.7e-13  Score=58.27  Aligned_cols=41  Identities=15%  Similarity=-0.014  Sum_probs=38.4

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|+++++|.|+.|++.|.... .|..|      +..|+++++|.|.+|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~-~L~~H------~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            6 SGTGEKPYKCEKCGKGYNSKF-NLDMH------QKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCSSCCSEEETTTTEEESCHH-HHHHH------HTTSCSCCSSCCSCC
T ss_pred             CCCCCCCeECCCCCCccCCHH-HHHHH------HHhhCCCCCCCCCCC
Confidence            588999999999999999998 99999      899999999999887

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.31  E-value=2.2e-13  Score=71.73  Aligned_cols=58  Identities=16%  Similarity=0.257  Sum_probs=52.1

Q ss_pred             CCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCC
Q psy3483           2 KSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKD   69 (99)
Q Consensus         2 h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~   69 (99)
                      |++++||.|+.|++.|.... .|..|      +..|  +++|.|.+|++.|... ..|..|++.|++.
T Consensus        69 h~~~~~~~C~~C~k~f~~~~-~l~~H------~~~H--~~~~~C~~C~k~f~~~-~~l~~H~~~h~~~  126 (129)
T 2wbt_A           69 SKAISQFVCPLCLMPFSSSV-SLKQH------IRYT--EHTKVCPVCKKEFTST-DSALDHVCKKHNI  126 (129)
T ss_dssp             HHHHCSEECTTTCCEESSHH-HHHHH------HHHT--CCCCBCTTTCCBCSSH-HHHHHHHHHTTCC
T ss_pred             hCCCCCeECCCCCcccCCHh-HHHHH------HHHC--CCCCCCCCCCcccCCH-HHHHHHHHHHCCc
Confidence            56789999999999999998 99999      7777  7889999999988777 9999999999875

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.1e-12  Score=55.89  Aligned_cols=43  Identities=23%  Similarity=0.320  Sum_probs=36.3

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            4 GSSGSGEKPFKCKECGKAFRQN-IHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSEECSSSCCEESSH-HHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCEECCcCCchhCCH-HHHHHHHHHhCCCCCCCCCCC
Confidence            6778888889999999877776 888899999999999988754

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=5.5e-13  Score=58.30  Aligned_cols=41  Identities=15%  Similarity=0.034  Sum_probs=38.3

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|+++++|.|+.|++.|.... .|..|      +..|+++++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~-~L~~H------~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            6 SGTGEKPYKCEECGKGFICRR-DLYTH------HMVHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCCCSEECSSSCCEESCHH-HHHHH------GGGGTTCCCSSTTCC
T ss_pred             CCCCCcCccCCCccchhCCHH-HHHHH------HHHhCCCCCCCCCCC
Confidence            588999999999999999998 99999      899999999999886

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=4.4e-13  Score=58.67  Aligned_cols=41  Identities=15%  Similarity=-0.025  Sum_probs=38.3

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|++++||.|+.|++.|.... .|..|      +..|+++++|.|.+|
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~-~L~~H------~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            6 SGSVEKPYKCEDCGKGYNRRL-NLDMH------QRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCCCSSCBCSSSCCBCSSHH-HHHHH------GGGGGSCCCCCSCCC
T ss_pred             CCCCCCCeeCcccCchhCCHH-HHHHH------HHhcCCCCCCCCCCC
Confidence            589999999999999999998 99999      889999999999887

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.31  E-value=5.1e-13  Score=58.43  Aligned_cols=41  Identities=10%  Similarity=0.000  Sum_probs=38.3

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|++++||.|+.|++.|.... .|..|      +..|+++++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~-~L~~H------~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            6 SGMGEKTWKCRECDMCFSQAS-SLRLH------QNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCCCCCSSSCCCCSSHH-HHHHH------GGGGSSSSCSCSSCC
T ss_pred             ccCCCcCeECCCCCcccCCHH-HHHHH------HHHcCCCCCcCCCCC
Confidence            588999999999999999998 99999      889999999999876

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.31  E-value=4.1e-13  Score=58.73  Aligned_cols=41  Identities=15%  Similarity=0.125  Sum_probs=38.2

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|++++||.|+.|++.|.... .|..|      +..|+++++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~-~L~~H------~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            6 SGTGEKRYKCNECGKVFSRNS-QLSQH------QKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCTTSCCEECSSSCCEESSHH-HHHHH------HTGGGCCCCCSSSCC
T ss_pred             CCCCCcCcCCCCCcchhCCHH-HHHHH------HHhcCCCCCCCCCCC
Confidence            588999999999999999998 99999      889999999999876

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.31  E-value=7.2e-13  Score=58.51  Aligned_cols=43  Identities=21%  Similarity=0.210  Sum_probs=39.6

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCc
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSK   50 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~   50 (99)
                      .|.++++|.|.+|++.|.... .|..|      +..|+++++|.|.+|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~-~L~~H------~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVY-HLNRH------KLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHH-HHHHH------GGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHH-HHHHH------HHhcCCCCCccCCCCCC
Confidence            367899999999999999998 99999      89999999999999985

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=6.8e-13  Score=57.54  Aligned_cols=40  Identities=25%  Similarity=0.175  Sum_probs=22.3

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceec
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC   74 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C   74 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~-~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            4 GSSGSGEKPYECNECGKAFIWK-SLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCSEECSSSCCEESSH-HHHHHHHGGGSSCSCCCC
T ss_pred             CcccCCCcCeECCCCCcccCch-HHHHHHHhHhcCCCCCCC
Confidence            4555555555555555554444 555555555555555544

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=5e-13  Score=58.45  Aligned_cols=41  Identities=12%  Similarity=0.073  Sum_probs=38.3

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|++++||.|+.|++.|.... .|..|      +..|+++++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~-~L~~H------~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            6 SGTGEKPYECSVCGKAFSHRQ-SLSVH------QRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCSSCCSEECSSSCCEESSHH-HHHHH------HGGGSSCCCSCSSCC
T ss_pred             CcCCCCCeeCCCcCCccCCHH-HHHHH------HHHhcCCCCCCCCCC
Confidence            588999999999999999998 99999      889999999999887

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=6e-13  Score=58.16  Aligned_cols=41  Identities=15%  Similarity=0.085  Sum_probs=38.4

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|++++||.|+.|++.|.... .|..|      +..|+++++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~-~L~~H------~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            6 SGTGEKPYKCNECGKAFSQTS-KLARH------QRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCTTCCTTTCCCCSSHH-HHHHH------HTTTTTCSCCCSCCC
T ss_pred             CCCCCcCcCCCCCCCccCCHH-HHHHH------HHhcCCCCCCCCCCC
Confidence            588999999999999999998 99999      899999999999887

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=8.6e-13  Score=57.88  Aligned_cols=41  Identities=15%  Similarity=0.135  Sum_probs=38.1

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCC-CCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVS-RPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~-~~~~~~~~~c~~c   48 (99)
                      +|++++||.|+.|++.|.... .|..|      +. .|+++++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~-~L~~H------~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            6 SGTGKKPYECIECGKAFIQNT-SLIRH------WRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCSBCCSSSCCCBSSHH-HHHHH------HTTTTTTSCSSSCCCC
T ss_pred             ccCCCCCEECCccCchhCChH-HHHHH------hHhhcCCCCCCCCCCC
Confidence            588999999999999999998 99999      88 8999999999876

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.30  E-value=6.5e-13  Score=58.04  Aligned_cols=41  Identities=12%  Similarity=0.144  Sum_probs=38.2

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|++++||.|+.|++.|.... .|..|      +..|+++++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~-~L~~H------~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            6 SGTGEKPYNCKECGKSFRWAS-CLLKH------QRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCCSEECSSSCCEESSHH-HHHHH------GGGGTSCCCCSTTCC
T ss_pred             CCCCCcCeECCccccccCChH-HHHHH------HHHhCCCCCCCCCCC
Confidence            588999999999999999998 99999      889999999999887

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.30  E-value=5.7e-13  Score=58.28  Aligned_cols=41  Identities=12%  Similarity=0.046  Sum_probs=38.2

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|+++++|.|+.|++.|.... .|..|      +..|+++++|.|.+|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~-~L~~H------~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            6 SGAGVNPYKCSQCEKSFSGKL-RLLVH------QRMHTREKPSGPSSG   46 (46)
T ss_dssp             SSCCCCSEECSSSSCEESSHH-HHHHH------HGGGCCSSCCSCCCC
T ss_pred             CCCCCCCeECCCCCcccCCHH-HHHHH------HHHcCCCCCCCCCCC
Confidence            588999999999999999998 99999      889999999999876

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.30  E-value=2.7e-12  Score=52.75  Aligned_cols=34  Identities=15%  Similarity=0.313  Sum_probs=31.8

Q ss_pred             hCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          66 HTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        66 ~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |++++||.|..|++.|....+|..|+++|++++|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            6789999999999999999999999999999987

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=8.7e-13  Score=56.52  Aligned_cols=40  Identities=18%  Similarity=0.322  Sum_probs=27.0

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceec
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC   74 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C   74 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            2 SSGSSGEKPYSCAECKETFSDN-NRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             CSSSCSCCSCBCTTTCCBCSSH-HHHHHHHHHTSCCSSCCC
T ss_pred             CcCcCCCCCeECCCCCCccCCH-HHHHHHHHHhCCCCCCCC
Confidence            4556666777777777765555 667777777777777666

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=3.6e-12  Score=55.66  Aligned_cols=42  Identities=29%  Similarity=0.362  Sum_probs=35.1

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFY   76 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~   76 (99)
                      ++.|+++++|.|.+|++.|... ..|..|+++|++++||.|..
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            4 GSSGTGQRPYECIECGKAFKTK-SSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSSEECSSSCCEESSH-HHHHHHHHHHSSSSCCCCCC
T ss_pred             ccccCCCcCcCCCCCCCccCCH-HHHHHHHHhcCCCCCCCCCC
Confidence            7778888888898898877766 88888888888888888863

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.1e-12  Score=57.31  Aligned_cols=41  Identities=17%  Similarity=0.124  Sum_probs=37.9

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|+++++|.|+.|++.|.... .|..|      +..|+++++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~-~L~~H------~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            6 SGTGEKPYRCAECGKAFTDRS-NLFTH------QKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCCCSEECSSSCCEESSHH-HHHHH------HTTTTTSCCCCTTCC
T ss_pred             CCCCCCCeECCCCCchhCCHH-HHHHH------HHHcCCCCCCCCCCC
Confidence            588999999999999999998 99999      899999999999864

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=9.3e-13  Score=57.60  Aligned_cols=38  Identities=26%  Similarity=0.463  Sum_probs=35.6

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKP   40 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCC
Confidence            56788999999999999999999999999999999986

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1e-12  Score=57.42  Aligned_cols=41  Identities=17%  Similarity=0.128  Sum_probs=38.4

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|+++++|.|..|++.|.... .|..|      +..|+++++|.|.+|
T Consensus         6 ~h~~~~~~~C~~C~k~f~~~~-~L~~H------~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            6 SGTGEKPYKCDVCHKSFRYGS-SLTVH------QRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSTTCCSEECSSSCCEESSHH-HHHHH------HTTTSSSCCCSCCCC
T ss_pred             CCCCCCCeeCcccCcccCChH-HHHHH------HHHhCCCCCCCCCCC
Confidence            588999999999999999998 99999      899999999999876

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=5.7e-13  Score=58.24  Aligned_cols=41  Identities=12%  Similarity=0.175  Sum_probs=38.1

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|++++||.|+.|++.|.... .|..|      +..|+++++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~-~L~~H------~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            6 SGTGEKPCKCTECGKAFCWKS-QLIMH------QRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCSEECSSSCCEESSSH-HHHHH------HHHCCSCCCSCCCCC
T ss_pred             cCCCCCCeeCCCCCCccCCHH-HHHHH------HHHhCCCCCCCCCCC
Confidence            588999999999999999998 99999      888999999999876

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.29  E-value=1e-12  Score=56.27  Aligned_cols=40  Identities=18%  Similarity=0.317  Sum_probs=23.8

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceec
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC   74 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C   74 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|
T Consensus         3 ~~~H~~~~~~~C~~C~k~f~~~-~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            3 SGSSGGETPYLCGQCGKSFTQR-GSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CSCCCSSCCEECSSSCCEESSH-HHHHHHHHHTTCCCCCCC
T ss_pred             CccCCCCCCeECCCCCcccCCH-HHHHHHhhhcCCCCCCCC
Confidence            4555666666666666655544 566666666666666654

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=5.1e-13  Score=58.40  Aligned_cols=41  Identities=12%  Similarity=0.137  Sum_probs=38.2

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|++++||.|+.|++.|.... .|..|      +..|+++++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~-~L~~H------~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            6 SGTGEKLYNCKECGKSFSRAP-CLLKH------ERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCBTTTTBCCSCHH-HHHHH------HHHCCSSSCCCCCCC
T ss_pred             cCCCCCCeECCCCCCccCchH-HHHHH------HHhcCCCCCCCCCCC
Confidence            588999999999999999998 99999      888999999999876

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.5e-12  Score=56.91  Aligned_cols=38  Identities=29%  Similarity=0.404  Sum_probs=35.6

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|....+|..|+++|++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ytj_A            3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKP   40 (46)
T ss_dssp             SSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCC
T ss_pred             cccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCC
Confidence            56789999999999999999999999999999999886

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=7.5e-13  Score=57.88  Aligned_cols=41  Identities=20%  Similarity=0.108  Sum_probs=38.2

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|+++++|.|+.|++.|.... .|..|      +..|+++++|.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~-~L~~H------~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            6 SGSGEKPFKCEECGKRFTQNS-QLHSH------QRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSEEETTTTEEESSHH-HHHHH------GGGGSCCCCSCCCCC
T ss_pred             CCCCCCCeeCCCCCcccCCHH-HHHHH------HHHcCCCCCCCCCCC
Confidence            588999999999999999998 99999      889999999999876

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=5.9e-13  Score=58.21  Aligned_cols=41  Identities=15%  Similarity=0.037  Sum_probs=38.2

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|++++||.|+.|++.|.... .|..|      +..|+++++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~-~L~~H------~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            6 SGSGEKPFKCEECGKGFYTNS-QCYSH------QRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSEECSSSCCEESSHH-HHHHH------HHHSCCSSCCSSCCC
T ss_pred             CCCCCCCcCCCCCCCcCCChH-HHHHH------HHHhCCCCCCCCCCC
Confidence            588999999999999999998 99999      888999999999886

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=7.9e-13  Score=57.76  Aligned_cols=41  Identities=20%  Similarity=0.173  Sum_probs=38.2

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|++++||.|+.|++.|.... .|..|      +..|+++++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~-~L~~H------~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            6 SGSGEKPYVCDYCGKAFGLSA-ELVRH------QRIHTGEKPSGPSSG   46 (46)
T ss_dssp             TTCCCCSEECSSSCCEESSHH-HHHHH------HGGGCCCSCCSSCCC
T ss_pred             CCCCCCCeECCCCChhhCCHH-HHHHH------HHhcCCCCCCCCCCC
Confidence            588999999999999999998 99999      889999999999887

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=6.7e-13  Score=56.92  Aligned_cols=40  Identities=20%  Similarity=0.316  Sum_probs=20.2

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceec
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC   74 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C   74 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            3 SGSSGGEKPYKCETCGARFVQV-AHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCSSCSEECTTTCCEESSH-HHHHHHTHHHHSCCSSCC
T ss_pred             CcccCCCCCEeCCCcChhhCCH-HHHHHHHHHcCCCCCCCC
Confidence            3445555555555555544443 555555555555555544

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=1.2e-12  Score=56.71  Aligned_cols=41  Identities=17%  Similarity=0.220  Sum_probs=31.4

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCF   75 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~   75 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            4 GSSGAGENPFKCSKCDRVFTQR-NYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             SCCCSCCCSEECSSSSCEESSS-HHHHHHHHHCCCCCSSCCC
T ss_pred             ccccCCCCCeECCCCCchhCCH-HHHHHHhHhcCCCCCCCCC
Confidence            6677777888888888877766 7788888888888777763

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.28  E-value=3.8e-12  Score=52.35  Aligned_cols=35  Identities=17%  Similarity=0.343  Sum_probs=32.2

Q ss_pred             hhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          65 THTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        65 ~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      +|++++||.|..|++.|.....|..|+++|++++|
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            36789999999999999999999999999999987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=1.1e-12  Score=56.75  Aligned_cols=38  Identities=18%  Similarity=0.403  Sum_probs=34.9

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|....+|..|+++|++++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   38 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP   38 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCS
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            34578999999999999999999999999999999886

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=5.4e-13  Score=58.34  Aligned_cols=41  Identities=15%  Similarity=0.054  Sum_probs=38.1

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|++++||.|+.|++.|.... .|..|      +..|+++++|.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~-~L~~H------~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            6 SGTGEKPFKCDICGKSFCGRS-RLNRH------SMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CSSSSCSCCCSSSCCCCSSHH-HHHHH------HHHTTCCCSSSCCCC
T ss_pred             CCCCCCCcCCCcCCchhCCHH-HHHHH------HHHcCCCCCCCCCCC
Confidence            588999999999999999998 99999      888999999999876

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.28  E-value=1.2e-12  Score=57.26  Aligned_cols=42  Identities=26%  Similarity=0.339  Sum_probs=35.1

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFY   76 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~   76 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~-~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            4 GSSGTGEKPFECAECGKSFSIS-SQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSEECSSSSCEESSH-HHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCEECCCCCcccCCH-HHHHHHHHHhCCCCCCCCCC
Confidence            7778888888899998877766 88888888888888888863

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.2e-12  Score=57.16  Aligned_cols=41  Identities=27%  Similarity=0.337  Sum_probs=33.9

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCF   75 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~   75 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|.
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~-~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            4 GSSGTGERHYECSECGKAFIQK-STLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCSCSSCCCEECSSSCCEESSH-HHHHHHHGGGCSCCCCSCC
T ss_pred             CcccCCCCCCCCCCCCcccCCH-HHHHHHHhHhCCCCCCCCC
Confidence            6778888888888888877766 8888888888888888876

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=5.6e-13  Score=58.25  Aligned_cols=41  Identities=20%  Similarity=0.171  Sum_probs=38.3

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|++++||.|+.|++.|.... .|..|      +..|+++++|.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~-~L~~H------~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            6 SGTGEKPYKCNECGKVFTQNS-HLANH------QRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSEETTTTEECSSHH-HHHHH------HGGGSCCCSCSSCCC
T ss_pred             CCCCCCCeECCCcChhhCCHH-HHHHH------HHHcCCCCCCCCCCC
Confidence            588999999999999999998 99999      889999999999887

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.28  E-value=1.3e-12  Score=57.12  Aligned_cols=38  Identities=21%  Similarity=0.396  Sum_probs=35.5

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2emk_A            3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKP   40 (46)
T ss_dssp             CCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCC
T ss_pred             CCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCC
Confidence            56678999999999999999999999999999999986

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.1e-12  Score=57.36  Aligned_cols=42  Identities=24%  Similarity=0.230  Sum_probs=35.0

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFY   76 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~   76 (99)
                      ++.|+++++|.|.+|++.|... ..|..|+++|++++||.|..
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            4 GSSGSGKKPYECKECRKTFIQI-GHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCSCCCSCSCCCSSSCCCCSSH-HHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCcCCCCCcCCCCcCchhCCH-HHHHHHHHHhCCCCCCCCCC
Confidence            6778888888898898877766 88888888888888888863

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.4e-12  Score=56.41  Aligned_cols=41  Identities=29%  Similarity=0.298  Sum_probs=29.5

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCF   75 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~   75 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            4 GSSGTGEKPYECNECQKAFNTK-SNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             SSCCSCCCSEECTTTCCEESCH-HHHHHHHHHTTTSSCSCCC
T ss_pred             ccCCCCCCCeECCCCCcccCCH-hHHHHHHHHhCCCCCCCCC
Confidence            5667777777777777766655 7777777777777777763

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.4e-12  Score=56.95  Aligned_cols=42  Identities=26%  Similarity=0.301  Sum_probs=34.5

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFY   76 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~   76 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            4 GSSGTGEKPYKCNECGKAFRAR-SSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCEECTTSCCEESSH-HHHHHHHHHHCCCSCSCTTC
T ss_pred             cCCCCCCCCeeccccCChhcCH-HHHHHHHHHcCCCCCCCCCC
Confidence            6778888888888888877766 88888888888888888863

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.27  E-value=1.5e-12  Score=56.91  Aligned_cols=38  Identities=26%  Similarity=0.467  Sum_probs=35.5

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKP   40 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSS
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCC
Confidence            56678999999999999999999999999999999886

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.27  E-value=5.3e-12  Score=55.13  Aligned_cols=38  Identities=21%  Similarity=0.366  Sum_probs=30.3

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKP   40 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCS
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            45567788888888888888888888888888888775

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.6e-12  Score=56.75  Aligned_cols=38  Identities=24%  Similarity=0.309  Sum_probs=35.5

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKP   40 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCT
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCC
Confidence            56778999999999999999999999999999999886

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.27  E-value=3.4e-13  Score=58.74  Aligned_cols=42  Identities=14%  Similarity=0.050  Sum_probs=39.1

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCS   49 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~   49 (99)
                      .|++++||.|..|++.|.... .|..|      ++.|+++++|.|+.||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~-~l~~H------~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKD-RMSYH------VRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHH-HHHHH------HHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHH-HHHHH------HHHccCCCCCCCcCCC
Confidence            489999999999999999998 99999      8889999999999986

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.5e-12  Score=56.86  Aligned_cols=42  Identities=29%  Similarity=0.380  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFY   76 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~   76 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~-~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            4 GSSGTGEKPYECKVCSKAFTQK-AHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCSEECSSSCCEESSH-HHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCcCeECCCCCcccCCH-HHHHHHHHHhCCCCCCCCCC
Confidence            6778888888999998877766 88888888888888888863

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.1e-12  Score=57.41  Aligned_cols=42  Identities=29%  Similarity=0.326  Sum_probs=35.1

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFY   76 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~   76 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~-~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            4 GSSGTGERHYECSECGKAFARK-STLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCCCCEECSSSCCEESSH-HHHHHHHTTTSCCCCCSSCC
T ss_pred             ccCcCCCCCeECCcCCcccCCH-HHHHHHHHHhCCCCCCCCCC
Confidence            7778888888898898877766 88888888888888888863

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.3e-12  Score=57.10  Aligned_cols=38  Identities=24%  Similarity=0.421  Sum_probs=35.5

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|...+.|..|+++|++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2eoo_A            3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKS   40 (46)
T ss_dssp             CCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTS
T ss_pred             CCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCC
Confidence            56678999999999999999999999999999999886

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.4e-12  Score=56.97  Aligned_cols=38  Identities=21%  Similarity=0.405  Sum_probs=35.4

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKP   40 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCC
Confidence            56678999999999999999999999999999999886

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.5e-12  Score=56.92  Aligned_cols=38  Identities=24%  Similarity=0.355  Sum_probs=35.6

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKP   40 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSC
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCC
Confidence            56788999999999999999999999999999999886

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.8e-12  Score=56.59  Aligned_cols=42  Identities=31%  Similarity=0.364  Sum_probs=32.9

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFY   76 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~   76 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~-~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            4 GSSGTGEKPYNCEECGKAFIHD-SQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSCCCSEECTTTCCEESSH-HHHHHHHHHHHSCCCSSSTT
T ss_pred             CcCcCCCcCccCCCCCCCcCCH-HHHHHHHHhcCCCCCCCCCC
Confidence            6777888888888888876666 78888888888888888763

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.4e-12  Score=56.96  Aligned_cols=38  Identities=32%  Similarity=0.482  Sum_probs=35.5

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|....+|..|+++|++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKP   40 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCC
Confidence            56678999999999999999999999999999999886

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=5.2e-12  Score=55.15  Aligned_cols=36  Identities=25%  Similarity=0.399  Sum_probs=20.0

Q ss_pred             HhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          64 RTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        64 ~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      ++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2ytp_A            5 SSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKP   40 (46)
T ss_dssp             CSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCC
T ss_pred             cCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCC
Confidence            345555555555555555555555555555555543

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.4e-12  Score=57.03  Aligned_cols=41  Identities=24%  Similarity=0.331  Sum_probs=34.3

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCF   75 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~   75 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            4 GSSGTGEKPYSCNVCGKAFVLS-AHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CCCCSSCCSEEETTTTEEESSH-HHHHHHHHHHSSCCSSSCC
T ss_pred             cccCCCCCCeECcccChhhCCH-HHHHHHHHHhCCCCCCCCC
Confidence            7778888888888888877766 8888888888888888886

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.26  E-value=6.3e-12  Score=53.78  Aligned_cols=37  Identities=16%  Similarity=0.334  Sum_probs=28.4

Q ss_pred             HHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          63 IRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        63 ~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      +++|++++||.|..|++.|....+|..|+++|+|++|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   38 (42)
T 2el5_A            2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESG   38 (42)
T ss_dssp             CSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCS
T ss_pred             CCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCC
Confidence            3467777888888888888888888888888877765

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.7e-12  Score=56.67  Aligned_cols=38  Identities=24%  Similarity=0.416  Sum_probs=35.4

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKP   40 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCC
Confidence            45678999999999999999999999999999999886

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=7.8e-12  Score=54.54  Aligned_cols=38  Identities=21%  Similarity=0.465  Sum_probs=30.5

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKP   40 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            45567788888888888888888888888888888775

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.6e-12  Score=56.80  Aligned_cols=41  Identities=27%  Similarity=0.281  Sum_probs=34.4

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCF   75 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~   75 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            4 GSSGTGEKPYKCSDCGKAFTRK-SGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCSCCCEECSSSCCEESSH-HHHHHHHHHHTCCCBTTTB
T ss_pred             ccccCCCCCEECcccCCccCCH-hHHHHHHHHcCCCCCCCCC
Confidence            6778888888888888877766 8888888888888888886

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2e-12  Score=56.46  Aligned_cols=38  Identities=18%  Similarity=0.427  Sum_probs=35.4

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRP   40 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCS
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCC
Confidence            45678999999999999999999999999999999886

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.6e-12  Score=56.77  Aligned_cols=42  Identities=29%  Similarity=0.317  Sum_probs=35.1

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFY   76 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~   76 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            4 GSSGTGEKPYECSDCGKSFIKK-SQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCSSCCSSCCSSSCCCCSSH-HHHHHHHGGGSSSCCCSSSC
T ss_pred             ccCCCCCCCcCCCCCCchhCCH-HHHHHHHHHhCCCCCCCCCC
Confidence            7778888888899998877766 88888888888888888863

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.1e-12  Score=56.45  Aligned_cols=38  Identities=18%  Similarity=0.407  Sum_probs=35.4

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|+++++|.|..|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKP   40 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCS
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCC
Confidence            45678999999999999999999999999999999886

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=9.4e-13  Score=56.47  Aligned_cols=40  Identities=23%  Similarity=0.398  Sum_probs=21.9

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceec
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC   74 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C   74 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            3 SGSSGGEKPYPCEICGTRFRHL-QTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CSCCSSSCCBCCSSSCCCBSSH-HHHHHHTTTTSCCSSTTC
T ss_pred             CcccCCCCCEECCCCCCccCCH-HHHHHHHHhcCCCCCCCC
Confidence            4455555555555555554444 555555555555555544

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.3e-12  Score=57.10  Aligned_cols=42  Identities=26%  Similarity=0.297  Sum_probs=35.5

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFY   76 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~   76 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~-~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            4 GSSGTGEKPYKCNECGKVFTQN-SHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCBCSSSCCBCSSH-HHHHHHHTTTTTSSCCCCSC
T ss_pred             CcCCCCCcCeECCCCCcccCCH-HHHHHHHHhhCCCCCCCCCC
Confidence            7788888889999999877766 88889998899999988863

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=6.1e-13  Score=57.02  Aligned_cols=40  Identities=25%  Similarity=0.362  Sum_probs=23.5

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceec
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC   74 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C   74 (99)
                      +..|+++++|.|++|++.|... ..|..|+++|++++||.|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            3 SGSSGGEKPYRCDQCGKAFSQK-GSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCSCCSBCCTTTTCCBSSH-HHHHTTGGGTSCCSCCCC
T ss_pred             ccccCCCCCeeCCCccchhCCH-HHHHHHHHHhCCCCCCCC
Confidence            4555666666666666655544 556666666666666554

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2e-12  Score=56.48  Aligned_cols=42  Identities=24%  Similarity=0.286  Sum_probs=35.1

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFY   76 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~   76 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~-~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            4 GSSGAGKKLFKCNECKKTFTQS-SSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSCCSSCCCBCTTTCCBCSSH-HHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCEECCccCcccCCH-HHHHHHHHHcCCCCCCCCCC
Confidence            6778888888898898877766 88888888888888888863

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=6.2e-12  Score=54.86  Aligned_cols=36  Identities=28%  Similarity=0.446  Sum_probs=19.0

Q ss_pred             HhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          64 RTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        64 ~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      ++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2enf_A            5 SSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKP   40 (46)
T ss_dssp             CCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSC
T ss_pred             cCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCC
Confidence            344555555555555555555555555555555443

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.5e-12  Score=56.82  Aligned_cols=42  Identities=29%  Similarity=0.354  Sum_probs=34.5

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFY   76 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~   76 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            4 GSSGTGEKPFECSECQKAFNTK-SNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCCCSEECSSSCCEESSH-HHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCcCCCCCCcccCCH-HHHHHHHHHhCCCCCCCCCC
Confidence            6778888888888888877766 88888888888888888863

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=8.1e-12  Score=54.45  Aligned_cols=38  Identities=29%  Similarity=0.482  Sum_probs=30.5

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKP   40 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSC
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCC
Confidence            45567888888888888888888888888888888775

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=1.2e-11  Score=53.43  Aligned_cols=38  Identities=18%  Similarity=0.299  Sum_probs=31.8

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG   40 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCS
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCC
Confidence            45678888888888888888888888888888888775

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=7.9e-12  Score=54.54  Aligned_cols=38  Identities=13%  Similarity=0.261  Sum_probs=29.4

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|....+|..|+++|++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERS   40 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCS
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCC
Confidence            44567778888888888888888888888888887765

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.5e-12  Score=56.89  Aligned_cols=38  Identities=26%  Similarity=0.403  Sum_probs=35.4

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKP   40 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCC
Confidence            45678999999999999999999999999999999886

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.6e-12  Score=56.82  Aligned_cols=42  Identities=26%  Similarity=0.348  Sum_probs=35.1

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFY   76 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~   76 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            4 GSSGSGEKPFQCEECGKRFTQN-SHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCSSSBCCSSSCCCBSSH-HHHHHHGGGGTTCCCSSCCC
T ss_pred             ccCCCCCcCCCCCCCCcccCCH-HHHHHHHHhcCCCCCCCCCC
Confidence            6778888888999998877766 88888888888888888863

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.5e-12  Score=56.86  Aligned_cols=41  Identities=20%  Similarity=0.251  Sum_probs=33.3

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCF   75 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~   75 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~-~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            4 GSSGTGEKPFQCKECGMNFSWS-CSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCSCCCCSEECSSSCCEESSS-HHHHHHHHHHHHSCCSSCS
T ss_pred             ccccCCCCCeeCcccChhhCCH-HHHHHHHHHhCCCCCCCCC
Confidence            6778888888888888877777 8888888888888888875

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.6e-12  Score=56.82  Aligned_cols=42  Identities=26%  Similarity=0.358  Sum_probs=35.0

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFY   76 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~   76 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            4 GSSGMGEKCYKCDVCGKEFSQS-SHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCCCBCSSSCCBCSSH-HHHHHHHTTTSSSCCCCTTC
T ss_pred             ccccCCCCCeECCCCCcccCCH-HHHHHHHHHcCCCCCCCCCC
Confidence            6778888888899998877766 88888888888888888863

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=2.5e-12  Score=56.13  Aligned_cols=38  Identities=11%  Similarity=0.148  Sum_probs=35.4

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKN   40 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCC
Confidence            45678999999999999999999999999999999886

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.5e-12  Score=56.85  Aligned_cols=42  Identities=24%  Similarity=0.335  Sum_probs=35.6

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFY   76 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~   76 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            4 GSSGTGENPFICSECGKVFTHK-TNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCSCCSCBCTTTCCBCSSH-HHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCEECCccCcccCCH-HHHHHHHHHhCCCCCCCCCC
Confidence            7788888889999999877776 88899999999999988863

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=7.2e-12  Score=54.67  Aligned_cols=37  Identities=22%  Similarity=0.463  Sum_probs=23.0

Q ss_pred             HHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          63 IRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        63 ~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      +++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2yth_A            4 GSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKP   40 (46)
T ss_dssp             CSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCC
T ss_pred             ccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            3455666666666666666666666666666666554

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=9.3e-12  Score=53.19  Aligned_cols=37  Identities=14%  Similarity=0.300  Sum_probs=29.6

Q ss_pred             HHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          63 IRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        63 ~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      +++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   38 (42)
T 2yte_A            2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSG   38 (42)
T ss_dssp             CSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSS
T ss_pred             CcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            4567788888888888888888888888888888765

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.1e-11  Score=54.08  Aligned_cols=41  Identities=24%  Similarity=0.365  Sum_probs=33.9

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCF   75 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~   75 (99)
                      ++.|+++++|.|.+|++.|... ..|..|+++|++++||.|.
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~-~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            4 GSSGTGEKPYECDVCRKAFSHH-ASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSSCBCTTTCCBCSSS-HHHHHHGGGSCCSCCCCCC
T ss_pred             CCCcCCCCCcCCCCcCchhCCH-HHHHHHHHHhCCCCCCCCC
Confidence            6778888888888888877777 8888888888888888876

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=7.4e-12  Score=54.61  Aligned_cols=37  Identities=19%  Similarity=0.348  Sum_probs=20.1

Q ss_pred             HHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          63 IRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        63 ~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      +++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2emg_A            4 GSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERP   40 (46)
T ss_dssp             CCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCC
T ss_pred             CCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCC
Confidence            3345555555555555555555555555555555543

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=7.8e-12  Score=54.56  Aligned_cols=38  Identities=21%  Similarity=0.385  Sum_probs=30.3

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERH   40 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCB
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCC
Confidence            45567788888888888888888888888888887765

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.4e-12  Score=56.19  Aligned_cols=38  Identities=21%  Similarity=0.345  Sum_probs=35.3

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERH   40 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSS
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCC
Confidence            56678999999999999999999999999999999876

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=8.5e-12  Score=54.38  Aligned_cols=38  Identities=21%  Similarity=0.395  Sum_probs=26.8

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|+++++|.|..|++.|....+|..|+++|++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENP   40 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCC
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCC
Confidence            34556777777777777777777777777777777665

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.5e-12  Score=56.87  Aligned_cols=42  Identities=31%  Similarity=0.349  Sum_probs=35.3

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFY   76 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~   76 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            4 GSSGTGGKPYQCNECGKAFSQT-SKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSSSSCSSSCCSSCCCCSSH-HHHHHHGGGGCCCCCCCCCC
T ss_pred             ccccCCCCCeECCCCCcccCCH-HHHHHHHHHcCCCCCCCCCC
Confidence            6778888889999999877766 88888988898888888863

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.4e-12  Score=56.42  Aligned_cols=41  Identities=34%  Similarity=0.339  Sum_probs=30.8

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCF   75 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~   75 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            4 GSSGTGMKPYVCNECGKAFRSK-SYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CCCSSSSSSSCCTTTCCCCSSH-HHHHHHHTTTCCSSSSCCC
T ss_pred             CcCCCCCcCeECCCCCCccCCH-HHHHHHhhhcCCCCCCCCC
Confidence            6677777778888888766665 7777787778777777763

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=9.2e-12  Score=54.30  Aligned_cols=38  Identities=24%  Similarity=0.354  Sum_probs=27.0

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|+++++|.|..|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKP   40 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCC
Confidence            34566777777777777777777777777777777665

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.7e-12  Score=56.68  Aligned_cols=42  Identities=29%  Similarity=0.364  Sum_probs=35.1

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFY   76 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~   76 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            4 GSSGTGEKPYICNECGKSFIQK-SHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCSCCSEECSSSCCEESSH-HHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCcCEECCCCChhhCCh-HHHHHHHHhcCCCCCcCCCC
Confidence            6778888888899998877766 88888888888888888863

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=6.7e-12  Score=54.75  Aligned_cols=37  Identities=24%  Similarity=0.404  Sum_probs=22.3

Q ss_pred             HHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          63 IRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        63 ~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      +++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eq2_A            4 GSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKP   40 (46)
T ss_dssp             CCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCC
T ss_pred             ccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            3455566666666666666666666666666665554

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.1e-11  Score=54.12  Aligned_cols=38  Identities=18%  Similarity=0.294  Sum_probs=30.5

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKP   40 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCC
Confidence            34567788888888888888888888888888888775

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.2e-12  Score=56.42  Aligned_cols=38  Identities=24%  Similarity=0.469  Sum_probs=35.3

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRP   40 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCC
Confidence            45678999999999999999999999999999999886

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.5e-12  Score=56.92  Aligned_cols=42  Identities=26%  Similarity=0.309  Sum_probs=35.2

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFY   76 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~   76 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~-~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            4 GSSGTGEKPYKCNECGKVFTQN-SHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCTTCCSSSCCCCSSH-HHHHHHHTTTSCSCCSSTTC
T ss_pred             CcCCCCCcCeECCCCCcccCCh-hHHHHHhHhcCCCCCCCCCC
Confidence            6778888888999999877766 88888888888888888863

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.2e-12  Score=56.64  Aligned_cols=41  Identities=27%  Similarity=0.361  Sum_probs=30.9

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCF   75 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~   75 (99)
                      ++.|+++++|.|.+|++.|... ..|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            4 GSSGTGENPYECCECGKVFSRK-DQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CCSSSSCCSCEETTTTEECSSH-HHHHHHHTTSSSSCSCCCC
T ss_pred             ccccCCCcCeeCCCCCCccCCH-HHHHHHHHHcCCCCCCCCC
Confidence            6677777788888888766665 7777888778877777763

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.9e-12  Score=56.54  Aligned_cols=41  Identities=27%  Similarity=0.350  Sum_probs=34.5

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCF   75 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~   75 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|.
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            4 GSSGTGEKPYRCGECGKAFAQK-ANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCEECSSSCCEESSH-HHHHHHHTTTSSCCSSCSC
T ss_pred             ccCCCCCCCeECCCCCCccCCH-HHHHHHHHHcCCCCCCCCC
Confidence            6778888888888888877766 8888888888888888886

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.6e-12  Score=56.76  Aligned_cols=41  Identities=27%  Similarity=0.337  Sum_probs=34.8

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCF   75 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~   75 (99)
                      ++.|+++++|.|.+|++.|... ..|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            4 GSSGTGEKPYKCNECGKAFRAH-SNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSCCCCCTTTTCCCSSH-HHHHHHHTTTCCSCCSSCC
T ss_pred             ccccCCCCCeECCcCChhhCCH-HHHHHHHHHhCCCCCCCCC
Confidence            7788888889999999877766 8888888888888888886

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.1e-12  Score=56.38  Aligned_cols=38  Identities=24%  Similarity=0.427  Sum_probs=35.4

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKP   40 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCC
Confidence            45678999999999999999999999999999999986

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=9.8e-12  Score=53.65  Aligned_cols=38  Identities=24%  Similarity=0.385  Sum_probs=32.5

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|....+|..|+++|++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESG   40 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCC
Confidence            45678888899999999999999999999999988876

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.7e-12  Score=56.72  Aligned_cols=41  Identities=20%  Similarity=0.297  Sum_probs=32.2

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCF   75 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~   75 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            4 GSSGSGERPFKCNECGKGFGRR-SHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CSCSSCCCSCCCSSSCCCCSSH-HHHHHHHHHHHHTTCCCSC
T ss_pred             CcCCCCCCCeECCCCCcccCCH-HHHHHHHHHhCCCCCCCCC
Confidence            6777788888888888876666 7888888888888888775

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=7.8e-12  Score=54.51  Aligned_cols=36  Identities=25%  Similarity=0.448  Sum_probs=19.1

Q ss_pred             HhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          64 RTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        64 ~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      ++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p   40 (46)
T 2yts_A            5 SSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKP   40 (46)
T ss_dssp             CCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCS
T ss_pred             CCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCC
Confidence            344555555555555555555555555555555443

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=7e-12  Score=54.68  Aligned_cols=37  Identities=27%  Similarity=0.406  Sum_probs=21.3

Q ss_pred             HHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          63 IRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        63 ~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      +++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2yti_A            4 GSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKP   40 (46)
T ss_dssp             CCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCC
T ss_pred             CcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCC
Confidence            3445555566666666666666666666655555554

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=8.7e-12  Score=54.35  Aligned_cols=37  Identities=27%  Similarity=0.480  Sum_probs=23.4

Q ss_pred             HHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          63 IRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        63 ~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      +++|++++||.|..|++.|....+|..|+++|++++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ytf_A            4 GSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKP   40 (46)
T ss_dssp             CCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSS
T ss_pred             CCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            3455666666666666666666666666666666554

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=9.3e-12  Score=54.31  Aligned_cols=37  Identities=22%  Similarity=0.361  Sum_probs=20.8

Q ss_pred             HHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          63 IRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        63 ~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      +++|++++||.|..|++.|....+|..|+++|++++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2em6_A            4 GSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP   40 (46)
T ss_dssp             CSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCC
T ss_pred             ccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            3445555555555555555555555555555555544

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=2.9e-12  Score=55.45  Aligned_cols=41  Identities=17%  Similarity=0.090  Sum_probs=30.4

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCF   75 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~   75 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|.
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            4 GSSGAAKTTSECQECGKIFRHS-SLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             SCSCSSSCCCCCTTTCCCCSSH-HHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCcCeECCCCCcccCCH-HHHHHHHHHHCCCCCCCCC
Confidence            5667777777788887766665 7777777777777777763

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=2.2e-12  Score=55.83  Aligned_cols=41  Identities=20%  Similarity=0.238  Sum_probs=30.9

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCF   75 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~   75 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            4 GSSGHTRKRYECSKCQATFNLR-KHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CSCCCCCSSEECTTTCCEESCH-HHHHHHGGGGCCCCCTTCC
T ss_pred             ccccCCCCCeECCCCCCccCCH-HHHHHHHHHcCCCCCcCCC
Confidence            6677777778888888766665 7777888788887777763

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1e-11  Score=54.20  Aligned_cols=38  Identities=16%  Similarity=0.275  Sum_probs=30.9

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETL   40 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCS
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCC
Confidence            45667888888888888888888888888888888775

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.23  E-value=1.3e-11  Score=52.68  Aligned_cols=38  Identities=18%  Similarity=0.338  Sum_probs=33.0

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|....+|..|+++|++++|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~   39 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP   39 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCC
Confidence            34568889999999999999999999999999998876

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=8.4e-12  Score=54.41  Aligned_cols=38  Identities=24%  Similarity=0.374  Sum_probs=32.7

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   40 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKP   40 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCC
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCC
Confidence            45678888999999999999999999999999988876

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=4.1e-12  Score=55.51  Aligned_cols=42  Identities=26%  Similarity=0.328  Sum_probs=33.5

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFY   76 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~   76 (99)
                      ++.|+++++|.|.+|++.|... ..|..|+++|++++||.|..
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            4 GSSGTGEKPYKCQVCGKAFRVS-SHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             SSSCSSCCSCBCSSSCCBCSSH-HHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCcccCCCCCCcccCcH-HHHHHHHHhcCCCCCCCCCC
Confidence            6777888888888888877666 88888888888888888763

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=1.5e-11  Score=53.66  Aligned_cols=41  Identities=24%  Similarity=0.274  Sum_probs=33.3

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCF   75 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~   75 (99)
                      ++.|+++++|.|.+|++.|... ..|..|+++|++++||.|.
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~-~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQA-SNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSH-HHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCCh-HHHHHHHHHhCCCCCCCCC
Confidence            5677888888888888877766 8888888888888888875

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=3.4e-12  Score=61.53  Aligned_cols=66  Identities=17%  Similarity=0.115  Sum_probs=57.8

Q ss_pred             hhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCC
Q psy3483          23 TIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        23 ~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      .|..|      ...+.+++++.|..|+..|. . ..|..|+ .+.+++|+.|..|++.|. ...|..|++++++++
T Consensus         4 ~L~~H------~~~~c~~r~~~C~~C~~~~~-~-~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            4 GSSGH------EETECPLRLAVCQHCDLELS-I-LKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGREG   69 (75)
T ss_dssp             CCSCC------CCCCCCCCCEECSSSCCEEC-H-HHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTBS
T ss_pred             HHHhh------CcccCCCcccCCcccChHhh-H-HHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCCc
Confidence            56778      78899999999999999763 4 8999999 899999999999999877 589999999998764

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.6e-12  Score=56.30  Aligned_cols=40  Identities=23%  Similarity=0.258  Sum_probs=32.1

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceec
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC   74 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C   74 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~-~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            4 GSSGTDSKSYNCNECGKAFTRI-FHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCEEETTTTEEESSS-HHHHTTHHHHCCCCCCSC
T ss_pred             CcCCCCCCCeECcccCcccCCH-HHHHHHHHHhCCCCCCCC
Confidence            6777888888888888877776 788888888888888876

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=3.4e-12  Score=55.76  Aligned_cols=38  Identities=21%  Similarity=0.364  Sum_probs=35.1

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKL   40 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCC
Confidence            35678999999999999999999999999999999886

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.1e-11  Score=53.97  Aligned_cols=36  Identities=25%  Similarity=0.510  Sum_probs=20.0

Q ss_pred             HhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          64 RTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        64 ~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      ++|++++||.|..|++.|....+|..|+++|++++|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2yrj_A            5 SSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKP   40 (46)
T ss_dssp             CCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCS
T ss_pred             cCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCC
Confidence            345555555555555555555555555555555543

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.22  E-value=1.2e-11  Score=52.14  Aligned_cols=34  Identities=18%  Similarity=0.360  Sum_probs=22.6

Q ss_pred             hCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          66 HTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        66 ~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |++++||.|..|++.|...+.|..|+++|++++|
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   34 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   34 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcc
Confidence            3556667777777777777777777777766664

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1e-11  Score=54.13  Aligned_cols=36  Identities=31%  Similarity=0.573  Sum_probs=19.7

Q ss_pred             HhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          64 RTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        64 ~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      ++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eq1_A            5 SSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKP   40 (46)
T ss_dssp             CCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCC
T ss_pred             cccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCC
Confidence            345555555555555555555555555555555543

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.3e-12  Score=56.29  Aligned_cols=38  Identities=21%  Similarity=0.405  Sum_probs=35.0

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKP   40 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCC
Confidence            35678999999999999999999999999999999886

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.1e-11  Score=53.81  Aligned_cols=41  Identities=22%  Similarity=0.323  Sum_probs=30.2

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCF   75 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~   75 (99)
                      ...|+++++|.|.+|++.|... ..|..|+++|++++||.|.
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~-~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            4 GSSGTGQKPFECTHCGKSFRAK-GNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCCSCCSEEETTTTEEESSH-HHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCCcCccCCCCCCccCCh-HHHHHHHHHhCCCCCCCCC
Confidence            4567777777777777766665 7777777777777777775

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=6.9e-12  Score=53.64  Aligned_cols=38  Identities=24%  Similarity=0.510  Sum_probs=33.6

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   39 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGP   39 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCS
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCC
Confidence            45678899999999999999999999999999999876

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=9.7e-12  Score=54.22  Aligned_cols=38  Identities=16%  Similarity=0.363  Sum_probs=32.6

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDP   40 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCC
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCC
Confidence            45678888999999999999999999999999988775

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=1.8e-11  Score=53.35  Aligned_cols=41  Identities=22%  Similarity=0.249  Sum_probs=32.9

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCC-CCceecC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTK-DRPYKCF   75 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~-~~~~~C~   75 (99)
                      ++.|+++++|.|.+|++.|... ..|..|+++|++ ++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            4 GSSGQKEKCFKCNKCEKTFSCS-KYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCSCCEECSSSCCEESSS-HHHHHHHTTCCSCCTTSSSC
T ss_pred             ccccCCCCCEECcCCCCcCCCH-HHHHHHHHHcCCCCCCCCCC
Confidence            6777888888888888877776 888888888888 8888875

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=1e-11  Score=53.62  Aligned_cols=38  Identities=16%  Similarity=0.232  Sum_probs=29.2

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSG   40 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCC
Confidence            44567777888888888888888888888888877765

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=3e-12  Score=55.95  Aligned_cols=38  Identities=18%  Similarity=0.254  Sum_probs=35.1

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcC-CCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS-VKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~-~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++ ++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKS   41 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTT
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCC
Confidence            45678999999999999999999999999999999 876

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=8.6e-12  Score=54.44  Aligned_cols=38  Identities=16%  Similarity=0.189  Sum_probs=20.6

Q ss_pred             CCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceecc
Q psy3483           2 KSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCC   46 (99)
Q Consensus         2 h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~   46 (99)
                      |++++||.|..|++.|.... .|..|      +..|+++++|.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~-~L~~H------~~~H~~~k~~~C~   44 (46)
T 2eon_A            7 GTGEKPYKCQVCGKAFRVSS-HLVQH------HSVHSGERPSGPS   44 (46)
T ss_dssp             CSSCCSCBCSSSCCBCSSHH-HHHHH------TTTTTSCCSCTTS
T ss_pred             CCCCcccCCCCCCcccCcHH-HHHHH------HHhcCCCCCCCCC
Confidence            45555555555555555555 55555      5555555555553

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=1.8e-11  Score=52.89  Aligned_cols=38  Identities=11%  Similarity=0.036  Sum_probs=32.8

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESG   40 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCC
Confidence            34568888999999999999999999999999998876

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1e-11  Score=53.57  Aligned_cols=38  Identities=18%  Similarity=0.219  Sum_probs=26.7

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESG   40 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSS
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCC
Confidence            34556777777777777777777777777777777664

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=4e-12  Score=55.26  Aligned_cols=40  Identities=13%  Similarity=0.109  Sum_probs=36.8

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCL   47 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~   47 (99)
                      +|+++++|.|..|++.|.... .|..|      +..|+++++|.|++
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~-~L~~H------~~~H~~~k~~~C~~   45 (45)
T 2epu_A            6 SGTGQKPFECTHCGKSFRAKG-NLVTH------QRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCSCCSEEETTTTEEESSHH-HHHHH------HTTTSSCCCCCSCC
T ss_pred             CCCCCcCccCCCCCCccCChH-HHHHH------HHHhCCCCCCCCCC
Confidence            588999999999999999998 99999      89999999998864

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.21  E-value=1.5e-11  Score=57.88  Aligned_cols=38  Identities=21%  Similarity=0.316  Sum_probs=18.2

Q ss_pred             CCCCcceeccC--CCcccccChhHHHHHH-HhhCCCCceecC
Q psy3483          37 PTKYQRYVCCL--CSKYRHSDASKMRSHI-RTHTKDRPYKCF   75 (99)
Q Consensus        37 ~~~~~~~~c~~--c~~~~~~~~~~~~~h~-~~~~~~~~~~C~   75 (99)
                      +++++||.|..  |++.|... +.|..|+ ++|++++|+-|.
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~-s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQ-QNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSH-HHHHHHHHHHSSSCCCCCCC
T ss_pred             ccCCCCeECCCCCcChhHcCH-HHHHHHhhhhCCCCCCcccc
Confidence            34455555532  55544443 5555554 345555555444

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=7.5e-12  Score=53.28  Aligned_cols=38  Identities=24%  Similarity=0.354  Sum_probs=18.2

Q ss_pred             CCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceec
Q psy3483          36 RPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKC   74 (99)
Q Consensus        36 ~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C   74 (99)
                      .|+++++|.|.+|++.|... ..|..|+++|++++||.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQK-GSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSH-HHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCH-HHHHHHHHHhCCCCCcCC
Confidence            34444455555555544433 445555555555554443

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=9.3e-12  Score=53.75  Aligned_cols=38  Identities=16%  Similarity=0.315  Sum_probs=26.6

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSG   40 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCS
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCC
Confidence            34566777777777777777777777777777776654

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.3e-11  Score=53.35  Aligned_cols=38  Identities=13%  Similarity=0.158  Sum_probs=30.4

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSG   40 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCC
Confidence            45567788888888888888888888888888888775

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=2.4e-12  Score=56.18  Aligned_cols=42  Identities=26%  Similarity=0.282  Sum_probs=35.4

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFY   76 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~   76 (99)
                      +..|+++++|.|.+|++.|... ..|..|+++|++++||.|..
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            4 GSSGTGEKPYECNQCGKAFSVR-SSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCSSCCCCSSEETTTTEECSSH-HHHHHHHTTSCCCCCCCSCC
T ss_pred             ccCCCCCCCeECCCCChhhCCH-HHHHHHHHHhCCCCCCCCCC
Confidence            6788888889999999877766 88889998999998988863

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=7e-12  Score=53.59  Aligned_cols=37  Identities=16%  Similarity=0.433  Sum_probs=25.2

Q ss_pred             HHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          63 IRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        63 ~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      +++|++++||.|..|++.|....+|..|+++|++++|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   39 (42)
T 2ytb_A            3 SGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP   39 (42)
T ss_dssp             CCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSC
T ss_pred             ccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCC
Confidence            4456666777777777777777777777777766665

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=6.2e-13  Score=58.17  Aligned_cols=41  Identities=15%  Similarity=0.057  Sum_probs=38.0

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|+++++|.|..|++.|.... .|..|      +..|+++++|.|++|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~-~L~~H------~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            6 SGEGEKPYQCSECGKSFSGSY-RLTQH------WITHTREKPSGPSSG   46 (46)
T ss_dssp             SCSCCCTTCCSSSCCCCSSHH-HHHHH------HTHHHHCCCCSCCCC
T ss_pred             CCCCCCCeeCCCCCcccCCHH-HHHHH------HHHcCCCCCCCCCCC
Confidence            588999999999999999998 99999      888999999999876

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.20  E-value=6.3e-12  Score=52.29  Aligned_cols=36  Identities=25%  Similarity=0.408  Sum_probs=30.5

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSV   97 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~   97 (99)
                      |+++|++++||.|..|++.|.....|..|+++|+|+
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            456788889999999999999999999999888875

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=2.5e-11  Score=52.22  Aligned_cols=40  Identities=13%  Similarity=0.233  Sum_probs=27.5

Q ss_pred             CCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecC
Q psy3483          35 SRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCF   75 (99)
Q Consensus        35 ~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~   75 (99)
                      +.|+++++|.|..|++.|... ..|..|+++|++++||.|.
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEE-ASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSH-HHHHHHHHHHTCTTCSSSC
T ss_pred             cCcCCCCCEECCCCCCeeCCh-HHHHHHHHhhCCCCCccCC
Confidence            346666777777777766555 6777777777777777765

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.1e-11  Score=53.50  Aligned_cols=43  Identities=19%  Similarity=0.208  Sum_probs=33.6

Q ss_pred             CCCCCCCcceecc--CCCcccccChhHHHHHHHhhCCCCceecCCC
Q psy3483          34 VSRPTKYQRYVCC--LCSKYRHSDASKMRSHIRTHTKDRPYKCFYC   77 (99)
Q Consensus        34 ~~~~~~~~~~~c~--~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c   77 (99)
                      .+.|+++++|.|.  .|++.|... ..|..|+++|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~-~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRS-DELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSH-HHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCH-HHHHHHHHHhCCCCCCCCCCC
Confidence            5667778888887  788876666 788888888888888888765

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1.4e-11  Score=53.69  Aligned_cols=36  Identities=28%  Similarity=0.528  Sum_probs=19.4

Q ss_pred             HhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          64 RTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        64 ~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      ++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eq3_A            5 SSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKP   40 (46)
T ss_dssp             CSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCC
T ss_pred             cCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCC
Confidence            345555555555555555555555555555555543

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.19  E-value=4.2e-12  Score=57.34  Aligned_cols=52  Identities=17%  Similarity=0.206  Sum_probs=44.5

Q ss_pred             cccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCcee
Q psy3483          14 SKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYK   73 (99)
Q Consensus        14 ~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~   73 (99)
                      ++.|.... .|..|      +..|+++++|.|.+|++.|... ..|..|+++|++++||.
T Consensus         3 ~k~~~~~~-~l~~h------~~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPP-GTEKP------RSRSQSEQPATCPICYAVIRQS-RNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSS-CCCCC------HHHHTSSCCEECTTTCCEESSH-HHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCc-chhhH------HHhcCCCCCccCCCCCcccCCH-HHHHHHHHHhccCCCCC
Confidence            35666666 78888      7889999999999999988777 99999999999999874

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=6.2e-12  Score=53.56  Aligned_cols=38  Identities=16%  Similarity=0.127  Sum_probs=35.2

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceec
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVC   45 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c   45 (99)
                      +|++++||.|+.|++.|.... .|..|      +..|+++++|.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~-~L~~H------~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKG-SLTLH------ERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHH-HHHHH------GGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHH-HHHHH------HHHhCCCCCcCC
Confidence            589999999999999999998 99999      889999999876

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=1.8e-11  Score=52.68  Aligned_cols=35  Identities=29%  Similarity=0.528  Sum_probs=33.2

Q ss_pred             hhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          65 THTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        65 ~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      +|++++||.|..|++.|....+|..|+++|++++|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   38 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKS   38 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCC
Confidence            57899999999999999999999999999999986

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=1.1e-11  Score=53.06  Aligned_cols=37  Identities=22%  Similarity=0.456  Sum_probs=26.5

Q ss_pred             HHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          63 IRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        63 ~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      +++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   39 (42)
T 2eos_A            3 SGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGP   39 (42)
T ss_dssp             CSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSS
T ss_pred             CcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCC
Confidence            4456677777777777777777777777777777665

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=1.1e-11  Score=54.09  Aligned_cols=36  Identities=22%  Similarity=0.235  Sum_probs=33.9

Q ss_pred             HhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          64 RTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        64 ~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      ++|+++++|.|..|++.|....+|..|+++|++++|
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2eom_A            5 SSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKP   40 (46)
T ss_dssp             CCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCC
T ss_pred             CCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCC
Confidence            468899999999999999999999999999999986

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=2.6e-11  Score=50.99  Aligned_cols=34  Identities=21%  Similarity=0.480  Sum_probs=30.2

Q ss_pred             hhCCCCceecCC--CCccccCchHHHHHHHHhcCCC
Q psy3483          65 THTKDRPYKCFY--CDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        65 ~~~~~~~~~C~~--c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      ++++++||.|..  |++.|...++|..|+++|+|+.
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~~   38 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTALD   38 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            467899999986  9999999999999999999863

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=9.3e-12  Score=54.70  Aligned_cols=41  Identities=10%  Similarity=0.035  Sum_probs=38.0

Q ss_pred             CCCCCceeeCc--cccccccccchhhhccchhhccCCCCCCCcceeccCC
Q psy3483           1 MKSTELIVTCM--YCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLC   48 (99)
Q Consensus         1 ~h~~~~~~~c~--~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c   48 (99)
                      +|+++++|.|.  .|++.|.... .|..|      +..|+++++|.|.+|
T Consensus         6 ~H~~~k~~~C~~~~C~k~f~~~~-~L~~H------~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            6 SGTGEKPFACTWPGCGWRFSRSD-ELSRH------RRSHSGVKPSGPSSG   48 (48)
T ss_dssp             SSCCCCCEECCSSSCCCEESSHH-HHHHH------HTTSCCCCSCSSCCC
T ss_pred             CcCCCCCeECCCCCCCCccCCHH-HHHHH------HHHhCCCCCCCCCCC
Confidence            58899999998  8999999998 99999      899999999999876

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.4e-11  Score=53.71  Aligned_cols=38  Identities=24%  Similarity=0.415  Sum_probs=32.6

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|....+|..|+++|++++|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKS   40 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            45678888999999999999999999999999988875

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=3.1e-11  Score=50.16  Aligned_cols=34  Identities=29%  Similarity=0.613  Sum_probs=31.4

Q ss_pred             hhCCCCceecCCCCccccCc-hHHHHHHHHhcCCC
Q psy3483          65 THTKDRPYKCFYCDYRSNER-SNVKAHMIRRHSVK   98 (99)
Q Consensus        65 ~~~~~~~~~C~~c~~~f~~~-~~l~~H~~~~~~~k   98 (99)
                      +|++++||.|..|++.|... ..|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            57889999999999999999 99999999999875

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=5e-11  Score=51.46  Aligned_cols=38  Identities=18%  Similarity=0.243  Sum_probs=33.4

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |+++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSG   40 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCC
Confidence            45678889999999999999999999999999998876

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.14  E-value=6.4e-12  Score=59.84  Aligned_cols=57  Identities=21%  Similarity=0.364  Sum_probs=48.7

Q ss_pred             CCCCceeeCcc--ccccccccchhhhccchhhccCCCCCCCcceeccC--CCcccccChhHHHHHHHhh
Q psy3483           2 KSTELIVTCMY--CSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCL--CSKYRHSDASKMRSHIRTH   66 (99)
Q Consensus         2 h~~~~~~~c~~--c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~--c~~~~~~~~~~~~~h~~~~   66 (99)
                      .+..++|.|..  |++.|.... .|..|      +..|+++++|.|..  |++.|... ..|..|+++|
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~-~L~~H------~~~H~~~~~~~C~~~~C~k~f~~~-~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSS-HLKAH------TRTHTGEKPFSCSWKGCERRFARS-DELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHH-HHHHH------HHHHSSSCSEECCCTTCCCEESSH-HHHHHHTTTC
T ss_pred             ccccCceeCCCCCCccccCCHH-HHHHH------HHhcCCCCCccCCCCCCCcccCCH-HHHHhHhhcC
Confidence            35578899988  999999998 99999      88899999999965  99987776 8888887654

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=5.3e-11  Score=49.05  Aligned_cols=34  Identities=29%  Similarity=0.676  Sum_probs=30.6

Q ss_pred             hhCCCCceecCCCCccccCchHHHHHHHHhcCCC
Q psy3483          65 THTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        65 ~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      +|++++||.|..|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            4788999999999999999999999999998875

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.12  E-value=7.6e-11  Score=49.20  Aligned_cols=34  Identities=18%  Similarity=0.421  Sum_probs=29.6

Q ss_pred             hCCCCceecC--CCCccccCchHHHHHHHHhcCCCC
Q psy3483          66 HTKDRPYKCF--YCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        66 ~~~~~~~~C~--~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |++++||.|.  .|++.|....+|..|+++|++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~   36 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLK   36 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            4678899999  599999999999999999998876

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=6.5e-11  Score=48.83  Aligned_cols=34  Identities=38%  Similarity=0.823  Sum_probs=30.4

Q ss_pred             hhCCCCceecCCCCccccCchHHHHHHHHhcCCC
Q psy3483          65 THTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        65 ~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      .|++++||.|..|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            4788899999999999999999999999998875

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=7.7e-11  Score=48.53  Aligned_cols=34  Identities=12%  Similarity=0.294  Sum_probs=30.4

Q ss_pred             hhCCCCceecCCCCccccCchHHHHHHHHhcCCC
Q psy3483          65 THTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        65 ~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      +|+++++|.|..|++.|.....|..|+++|++++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            4678899999999999999999999999999875

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=5.5e-11  Score=49.06  Aligned_cols=34  Identities=15%  Similarity=0.338  Sum_probs=30.2

Q ss_pred             hhCCCCceecCCCCccccCchHHHHHHHHhcCCC
Q psy3483          65 THTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        65 ~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      .|++++||.|..|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            4678899999999999999999999999998875

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=99.11  E-value=8.4e-11  Score=47.71  Aligned_cols=30  Identities=13%  Similarity=0.267  Sum_probs=24.2

Q ss_pred             CceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          70 RPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        70 ~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      +||.|..|++.|....+|..|+++|+|++|
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~   30 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGE   30 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCC
Confidence            467888888888888888888888888775

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=1.4e-10  Score=47.76  Aligned_cols=34  Identities=18%  Similarity=0.411  Sum_probs=30.4

Q ss_pred             hhCCCCceecCCCCccccCchHHHHHHHHhcCCC
Q psy3483          65 THTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        65 ~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      .+.+++||.|..|++.|.....|..|+++|++++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            4678899999999999999999999999999875

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=99.07  E-value=8e-11  Score=51.86  Aligned_cols=34  Identities=24%  Similarity=0.528  Sum_probs=26.1

Q ss_pred             hhCCCCceecCCCCccccCchHHHHHHH-HhcCCC
Q psy3483          65 THTKDRPYKCFYCDYRSNERSNVKAHMI-RRHSVK   98 (99)
Q Consensus        65 ~~~~~~~~~C~~c~~~f~~~~~l~~H~~-~~~~~k   98 (99)
                      +|++++||.|..|++.|....+|..|++ +|+++.
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            3678888888888888888888888888 887754

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.07  E-value=7e-11  Score=54.78  Aligned_cols=45  Identities=16%  Similarity=0.233  Sum_probs=37.6

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSD   55 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~   55 (99)
                      +|++++||.|+.|++.|.... .|.         ..|+++++|.|..|++.|...
T Consensus         8 ~H~~~k~~~C~~C~k~F~~~~-~l~---------~~H~~~k~~~C~~C~k~f~~~   52 (62)
T 1vd4_A            8 DSTNRASFKCPVCSSTFTDLE-ANQ---------LFDPMTGTFRCTFCHTEVEED   52 (62)
T ss_dssp             SCCSSSEEECSSSCCEEEHHH-HHH---------HEETTTTEEBCSSSCCBCEEC
T ss_pred             HcCCCCCccCCCCCchhccHH-HhH---------hhcCCCCCEECCCCCCccccC
Confidence            589999999999999998776 443         347889999999999977655

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=5.5e-11  Score=49.48  Aligned_cols=34  Identities=21%  Similarity=0.504  Sum_probs=29.1

Q ss_pred             HhhCCCCceecCCCCccccCchHHHHH-HHHhcCC
Q psy3483          64 RTHTKDRPYKCFYCDYRSNERSNVKAH-MIRRHSV   97 (99)
Q Consensus        64 ~~~~~~~~~~C~~c~~~f~~~~~l~~H-~~~~~~~   97 (99)
                      ++|++++||.|..|++.|.....|..| ++.|+++
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            357888999999999999999999999 8888875

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=99.01  E-value=4.1e-10  Score=46.71  Aligned_cols=33  Identities=18%  Similarity=0.312  Sum_probs=29.8

Q ss_pred             hCCCCceecC--CCCccccCchHHHHHHHHhcCCC
Q psy3483          66 HTKDRPYKCF--YCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        66 ~~~~~~~~C~--~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      +++++||.|.  .|++.|...+.|..|+++|+|++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            6789999998  49999999999999999999875

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.96  E-value=1.2e-11  Score=61.37  Aligned_cols=58  Identities=14%  Similarity=0.225  Sum_probs=46.1

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHHHHHhcC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS   96 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~   96 (99)
                      ...|+++++|.|.+|++.|... ..|..|+++|++++||.|..|.+    ...|..|.++|.|
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~-~~L~~H~~~Ht~ekp~~C~~~~~----~~~~~~~~~~~~~   74 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQST-AELTSHLNIHNEEFQKRAKRQER----RKQLLSKQKYADG   74 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSH-HHHHHHHHHHHHHHHHHCCCCSC----CCCCCCCCCCCCC
T ss_pred             ccccCCCCCCcCCCCCCEeCCH-HHHHHHHHHhCCCCCcccchhhh----HHHHHhhhccccc
Confidence            4668899999999999987776 89999999999999999987654    4444455555554

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.96  E-value=4.9e-10  Score=46.96  Aligned_cols=35  Identities=23%  Similarity=0.491  Sum_probs=19.0

Q ss_pred             CCCcceeccCCCcccccChhHHHHHHHhhCCCCcee
Q psy3483          38 TKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYK   73 (99)
Q Consensus        38 ~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~   73 (99)
                      +++++|.|.+|++.|... ..|..|+++|++++||.
T Consensus         2 ~~~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k~~~   36 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSA-QALGGHMNVHRRDRARL   36 (39)
T ss_dssp             CCSSSEECTTTCCEESSH-HHHHHHHHTTCCSCTTT
T ss_pred             CCCCceECCCCCcccCCH-HHHHHHHHHcCCCccce
Confidence            344555555555554444 55555555555555554

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.95  E-value=9.8e-10  Score=43.04  Aligned_cols=30  Identities=40%  Similarity=0.941  Sum_probs=27.1

Q ss_pred             CceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          70 RPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        70 ~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      +||.|..|++.|.....|..|+++|++++|
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            478999999999999999999999998875

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.95  E-value=1.9e-12  Score=64.28  Aligned_cols=56  Identities=9%  Similarity=0.086  Sum_probs=45.0

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTK   68 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~   68 (99)
                      +|++++||.|+.|++.|.... .|..|      +..|+++++|.|..+...     ..+..|++.+.+
T Consensus        19 ~H~~~kpy~C~~C~k~F~~~~-~L~~H------~~~Ht~ekp~~C~~~~~~-----~~~~~~~~~~~~   74 (88)
T 1x6f_A           19 PRLQNSTYQCKHCDSKLQSTA-ELTSH------LNIHNEEFQKRAKRQERR-----KQLLSKQKYADG   74 (88)
T ss_dssp             SCCCCSCEECSSSCCEESSHH-HHHHH------HHHHHHHHHHHCCCCSCC-----CCCCCCCCCCCC
T ss_pred             ccCCCCCCcCCCCCCEeCCHH-HHHHH------HHHhCCCCCcccchhhhH-----HHHHhhhccccc
Confidence            488999999999999999998 99999      888999999999887652     334445555554

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.94  E-value=9.1e-10  Score=43.14  Aligned_cols=30  Identities=23%  Similarity=0.537  Sum_probs=26.8

Q ss_pred             CCceecCCCCccccCchHHHHHHHHhcCCC
Q psy3483          69 DRPYKCFYCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        69 ~~~~~C~~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      ++||.|..|++.|.....|..|+++|+|++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            468999999999999999999999998875

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.94  E-value=9.9e-10  Score=42.79  Aligned_cols=29  Identities=17%  Similarity=0.355  Sum_probs=26.1

Q ss_pred             CceecCCCCccccCchHHHHHHHHhcCCC
Q psy3483          70 RPYKCFYCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        70 ~~~~C~~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      +||.|..|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            57999999999999999999999998875

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.92  E-value=2.4e-10  Score=46.75  Aligned_cols=25  Identities=20%  Similarity=0.333  Sum_probs=13.1

Q ss_pred             CCCCceeeCccccccccccchhhhcc
Q psy3483           2 KSTELIVTCMYCSKILTYETETIMNH   27 (99)
Q Consensus         2 h~~~~~~~c~~c~~~f~~~~~~~~~h   27 (99)
                      |++++||.|..|++.|.... .|..|
T Consensus         2 H~~~k~~~C~~C~k~f~~~~-~l~~H   26 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKA-NCARH   26 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHH-HHHHH
T ss_pred             CCCCcCeeCCCCCcccCCHH-HHHHH
Confidence            45555555555555555544 45555

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=1.4e-09  Score=44.92  Aligned_cols=36  Identities=28%  Similarity=0.487  Sum_probs=27.9

Q ss_pred             CCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCc
Q psy3483          35 SRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRP   71 (99)
Q Consensus        35 ~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~   71 (99)
                      ..|+++++|.|..|++.|... ..|..|+++|++++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~-~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSED-RLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSH-HHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCH-HHHHHHHHHHcCCCC
Confidence            456778888888888876666 888888888887764

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.91  E-value=1.8e-09  Score=43.07  Aligned_cols=30  Identities=27%  Similarity=0.450  Sum_probs=26.8

Q ss_pred             CCceecC--CCCccccCchHHHHHHHHhcCCC
Q psy3483          69 DRPYKCF--YCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        69 ~~~~~C~--~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      ++||.|.  .|++.|.....|..|+++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            4689998  89999999999999999999875

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.91  E-value=1.7e-09  Score=42.07  Aligned_cols=29  Identities=21%  Similarity=0.396  Sum_probs=25.9

Q ss_pred             CceecCCCCccccCchHHHHHHHHhcCCC
Q psy3483          70 RPYKCFYCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        70 ~~~~C~~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      +||.|..|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            47899999999999999999999998875

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.90  E-value=2.2e-10  Score=46.81  Aligned_cols=32  Identities=38%  Similarity=0.561  Sum_probs=16.2

Q ss_pred             CCCcceeccCCCcccccChhHHHHHHHhhCCCC
Q psy3483          38 TKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDR   70 (99)
Q Consensus        38 ~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~   70 (99)
                      +++++|.|.+|++.|... ..|..|++.|++++
T Consensus         3 ~~~k~~~C~~C~k~f~~~-~~L~~H~~~h~~~k   34 (35)
T 2elx_A            3 SGSSGYVCALCLKKFVSS-IRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCSEECSSSCCEESSH-HHHHHHHHHTSCTT
T ss_pred             CCCCCeECCCCcchhCCH-HHHHHHHHHHcCCC
Confidence            444555555555544443 55555555555443

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.90  E-value=8e-10  Score=48.32  Aligned_cols=36  Identities=17%  Similarity=0.428  Sum_probs=30.6

Q ss_pred             HHhhCCCCceecC--CCCccccCchHHHHHHHHhcCCC
Q psy3483          63 IRTHTKDRPYKCF--YCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        63 ~~~~~~~~~~~C~--~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      ...|++++||.|.  .|++.|...++|..|+++|+|++
T Consensus        10 ~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           10 YVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            3457889999995  79999999999999999998875

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.90  E-value=1.8e-09  Score=50.66  Aligned_cols=32  Identities=22%  Similarity=0.342  Sum_probs=19.6

Q ss_pred             CCCCcceeccCCCcccccChhHHHHHHHhhCCC
Q psy3483          37 PTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKD   69 (99)
Q Consensus        37 ~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~   69 (99)
                      +.++++|.|.+|++.|... ..|..|+++|+++
T Consensus         8 ~~~ekpy~C~~CgK~F~~~-s~L~~H~r~Htg~   39 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDA-NRLRQHEAQHGVT   39 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCH-HHHHHHHHHHTTT
T ss_pred             CCCccCcCCCCCCCccCCH-HHHHhhhhhhCCC
Confidence            4556666666666655544 6666666666654

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.89  E-value=1.7e-09  Score=41.95  Aligned_cols=29  Identities=31%  Similarity=0.433  Sum_probs=26.1

Q ss_pred             CceecCCCCccccCchHHHHHHHHhcCCC
Q psy3483          70 RPYKCFYCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        70 ~~~~C~~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      +||.|..|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            47899999999999999999999998875

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.88  E-value=2e-09  Score=41.82  Aligned_cols=29  Identities=28%  Similarity=0.444  Sum_probs=26.1

Q ss_pred             CceecCCCCccccCchHHHHHHHHhcCCC
Q psy3483          70 RPYKCFYCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        70 ~~~~C~~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      +||.|..|++.|.....|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            47999999999999999999999998875

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.87  E-value=3.8e-11  Score=48.40  Aligned_cols=30  Identities=17%  Similarity=0.276  Sum_probs=24.9

Q ss_pred             CceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          70 RPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        70 ~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      +||.|..|++.|...++|..|+++|++++|
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp   30 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVA   30 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCC
Confidence            478888888888888888888888888876

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.86  E-value=1.9e-09  Score=42.73  Aligned_cols=29  Identities=28%  Similarity=0.613  Sum_probs=26.0

Q ss_pred             CceecC--CCCccccCchHHHHHHHHhcCCC
Q psy3483          70 RPYKCF--YCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        70 ~~~~C~--~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      +||.|.  .|++.|...+.|..|+++|+|++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            478997  89999999999999999999875

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.85  E-value=3.5e-09  Score=49.86  Aligned_cols=34  Identities=26%  Similarity=0.396  Sum_probs=29.9

Q ss_pred             hCCCCceecCC--CCccccCchHHHHHH-HHhcCCCC
Q psy3483          66 HTKDRPYKCFY--CDYRSNERSNVKAHM-IRRHSVKP   99 (99)
Q Consensus        66 ~~~~~~~~C~~--c~~~f~~~~~l~~H~-~~~~~~kp   99 (99)
                      .++++||.|..  |++.|...++|..|+ ++|+++||
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP   58 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLP   58 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCC
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCC
Confidence            57899999975  999999999999996 68999987

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.81  E-value=8.7e-10  Score=48.44  Aligned_cols=34  Identities=12%  Similarity=0.160  Sum_probs=23.6

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCC-CCCCCc
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVS-RPTKYQ   41 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~-~~~~~~   41 (99)
                      +|++++||.|..|++.|.... .|..|      +. .|+++.
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~-~L~~H------~~~~H~~e~   35 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRP-GLSYH------YAHSHLAEE   35 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHH-HHHHH------HHHSSCC--
T ss_pred             CCCCCcCEECCCcCcccCCHH-HHHHH------hhhhcCCCC
Confidence            577788888888888887777 77777      66 666554

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.28  E-value=6.1e-10  Score=43.51  Aligned_cols=29  Identities=24%  Similarity=0.510  Sum_probs=25.5

Q ss_pred             CceecCCCCccccCchHHHHHHHHhcCCC
Q psy3483          70 RPYKCFYCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        70 ~~~~C~~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      +||.|..|++.|....+|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            47899999999999999999999998874

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.79  E-value=3.9e-09  Score=40.72  Aligned_cols=28  Identities=25%  Similarity=0.513  Sum_probs=24.4

Q ss_pred             CCceecCCCCccccCchHHHHHHHHhcC
Q psy3483          69 DRPYKCFYCDYRSNERSNVKAHMIRRHS   96 (99)
Q Consensus        69 ~~~~~C~~c~~~f~~~~~l~~H~~~~~~   96 (99)
                      ++||.|..|++.|.....|..|+++|+|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            4689999999999999999999988865

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=98.27  E-value=6.8e-10  Score=43.61  Aligned_cols=30  Identities=20%  Similarity=0.469  Sum_probs=26.2

Q ss_pred             CCceecCCCCccccCchHHHHHHHHhcCCC
Q psy3483          69 DRPYKCFYCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        69 ~~~~~C~~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      ++||.|..|++.|.....|..|+++|++++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            368999999999999999999999998864

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.77  E-value=6.2e-09  Score=39.85  Aligned_cols=27  Identities=26%  Similarity=0.634  Sum_probs=23.8

Q ss_pred             CCceecCCCCccccCchHHHHHHHHhc
Q psy3483          69 DRPYKCFYCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        69 ~~~~~C~~c~~~f~~~~~l~~H~~~~~   95 (99)
                      ++||.|..|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            468999999999999999999998874

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=2.8e-09  Score=43.72  Aligned_cols=31  Identities=16%  Similarity=0.338  Sum_probs=14.8

Q ss_pred             CCCCcceeccCCCcccccChhHHHHHHHhhCC
Q psy3483          37 PTKYQRYVCCLCSKYRHSDASKMRSHIRTHTK   68 (99)
Q Consensus        37 ~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~   68 (99)
                      |+++++|.|.+|++.|... ..|..|+++|++
T Consensus         4 h~~~k~~~C~~C~k~f~~~-~~l~~H~~~H~~   34 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNE-LDRDRHMLVHGD   34 (36)
T ss_dssp             SCCCCCEECSSSCCEESSH-HHHHHHHTTTST
T ss_pred             CCCCCCeECCCCCCccCCH-HHHHHHHHHhcC
Confidence            3444455555555544433 445555554444

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.77  E-value=7.3e-09  Score=42.81  Aligned_cols=30  Identities=20%  Similarity=0.301  Sum_probs=20.8

Q ss_pred             hCCCCceecCCCCccccCchHHHHHHHHhc
Q psy3483          66 HTKDRPYKCFYCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        66 ~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~   95 (99)
                      ..+++||.|.+|++.|...++|..|+..+.
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~py~C   32 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQAYYC   32 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHHHHTS
T ss_pred             CCCccCeECCCCCCccCCHhHccCcCCeEC
Confidence            356777777777777777777777764443

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=4.5e-10  Score=54.02  Aligned_cols=59  Identities=12%  Similarity=0.236  Sum_probs=49.4

Q ss_pred             CCCCCceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCC
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDR   70 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~   70 (99)
                      +|.+++|+.|.+|++.|. .. .|..|      . .+.+++++.|..|++.+ .. ..|..|+.++++++
T Consensus        11 ~~c~~r~~~C~~C~~~~~-~~-~L~~H------~-~~c~~~~~~C~~C~~~~-~~-~~l~~H~~~c~~~~   69 (75)
T 2d9k_A           11 TECPLRLAVCQHCDLELS-IL-KLKEH------E-DYCGARTELCGNCGRNV-LV-KDLKTHPEVCGREG   69 (75)
T ss_dssp             CCCCCCCEECSSSCCEEC-HH-HHHHH------H-HHHHHCEEECSSSCCEE-ET-TGGGTHHHHBTTBS
T ss_pred             ccCCCcccCCcccChHhh-HH-HHHHH------H-hHcCCCceEcccCCCcC-cH-HHHHHHHHHccCCc
Confidence            367899999999999995 44 78999      6 78889999999999954 45 88999999887753

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.76  E-value=1.1e-08  Score=42.03  Aligned_cols=35  Identities=14%  Similarity=0.248  Sum_probs=28.0

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKD   69 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~   69 (99)
                      ++.|+++++|.|+.|++.|... ..|..|++.|+++
T Consensus         3 ~~~h~~~k~~~C~~C~k~f~~~-~~l~~H~~~H~~~   37 (37)
T 1p7a_A            3 TRGSTGIKPFQCPDCDRSFSRS-DHLALHRKRHMLV   37 (37)
T ss_dssp             SSTTCCSSSBCCTTTCCCBSSH-HHHHHHHGGGTCC
T ss_pred             CCcCCCCCCccCCCCCcccCcH-HHHHHHHHHhccC
Confidence            6778888888888888877766 8888888888763

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.74  E-value=8.4e-09  Score=41.55  Aligned_cols=32  Identities=19%  Similarity=0.329  Sum_probs=26.0

Q ss_pred             cceeccCCCcccccChhHHHHHHHhhCCCCcee
Q psy3483          41 QRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYK   73 (99)
Q Consensus        41 ~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~   73 (99)
                      ++|.|.+|++.|... ..|..|+.+|++++||.
T Consensus         1 kp~~C~~C~k~F~~~-~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRS-DHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSH-HHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCH-HHHHHHHHHhCCCCCCC
Confidence            367888898877766 88888988898888874

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.74  E-value=5.4e-09  Score=40.89  Aligned_cols=29  Identities=17%  Similarity=0.282  Sum_probs=24.9

Q ss_pred             CceecCCCCccccCchHHHHH-HHHhcCCC
Q psy3483          70 RPYKCFYCDYRSNERSNVKAH-MIRRHSVK   98 (99)
Q Consensus        70 ~~~~C~~c~~~f~~~~~l~~H-~~~~~~~k   98 (99)
                      +||.|..|++.|.....|..| +++|+|++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            478899999999999999999 78888874

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.74  E-value=4.6e-09  Score=40.33  Aligned_cols=27  Identities=26%  Similarity=0.555  Sum_probs=23.4

Q ss_pred             CCceecCCCCccccCchHHHHHHHHhc
Q psy3483          69 DRPYKCFYCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        69 ~~~~~C~~c~~~f~~~~~l~~H~~~~~   95 (99)
                      ++||.|..|++.|...+.|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            468999999999999999999988774

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.72  E-value=6.5e-09  Score=39.69  Aligned_cols=27  Identities=26%  Similarity=0.470  Sum_probs=22.6

Q ss_pred             ceecCCCCccccCchHHHHHHHHhcCC
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMIRRHSV   97 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~~~~~~   97 (99)
                      ||.|..|++.|.....|..|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            588999999999999999999988874

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.67  E-value=2.3e-09  Score=44.38  Aligned_cols=24  Identities=17%  Similarity=0.351  Sum_probs=13.0

Q ss_pred             CCCceeeCccccccccccchhhhcc
Q psy3483           3 STELIVTCMYCSKILTYETETIMNH   27 (99)
Q Consensus         3 ~~~~~~~c~~c~~~f~~~~~~~~~h   27 (99)
                      .|++||.|+.|++.|..++ .|..|
T Consensus         4 ~gekp~~C~~CgK~F~~~s-~L~~H   27 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPS-TLEAH   27 (36)
T ss_dssp             SSCCCCEETTTTEECSCHH-HHHHH
T ss_pred             CCccCeECCCCCCccCCHh-HccCc
Confidence            4455555555555555555 55555

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.67  E-value=1.3e-08  Score=42.11  Aligned_cols=35  Identities=11%  Similarity=0.347  Sum_probs=23.5

Q ss_pred             CCCCcceecc--CCCcccccChhHHHHHHHhhCCCCce
Q psy3483          37 PTKYQRYVCC--LCSKYRHSDASKMRSHIRTHTKDRPY   72 (99)
Q Consensus        37 ~~~~~~~~c~--~c~~~~~~~~~~~~~h~~~~~~~~~~   72 (99)
                      |+++++|.|.  .|++.|... ..|..|+++|++++||
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~-~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNE-DHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSH-HHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCH-HHHHHHHHHhCCCCCC
Confidence            3456677777  477766655 7777777777777665

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=1.6e-09  Score=44.78  Aligned_cols=33  Identities=21%  Similarity=0.364  Sum_probs=16.1

Q ss_pred             CCCCcceeccCCCcccccChhHHHHHHHhhCCC
Q psy3483          37 PTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKD   69 (99)
Q Consensus        37 ~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~   69 (99)
                      |+++++|.|..|++.|......|..|+++|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            445555555555554332114455555555443

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=3.4e-08  Score=40.25  Aligned_cols=33  Identities=24%  Similarity=0.446  Sum_probs=23.1

Q ss_pred             CCCCCcceeccCCCcccccChhHHHHHHHhhCCC
Q psy3483          36 RPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKD   69 (99)
Q Consensus        36 ~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~   69 (99)
                      .|+++++|.|..|++.|... ..|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~-~~l~~H~~~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIK-ANLNVHLRKHTGE   35 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSH-HHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCcccCCH-HHHHHHHHHccCC
Confidence            45667777777777766655 7777777777665

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=3.3e-08  Score=41.28  Aligned_cols=32  Identities=19%  Similarity=0.286  Sum_probs=21.8

Q ss_pred             CCCCcceeccC--CCcccccChhHHHHHHHhhCCC
Q psy3483          37 PTKYQRYVCCL--CSKYRHSDASKMRSHIRTHTKD   69 (99)
Q Consensus        37 ~~~~~~~~c~~--c~~~~~~~~~~~~~h~~~~~~~   69 (99)
                      +++++||.|..  |++.|... ..|..|+++|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~-~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDK-YKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCH-HHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCH-HHHHHHHHhcCCC
Confidence            45667777765  77766655 7777777777664

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=2.7e-08  Score=41.02  Aligned_cols=34  Identities=21%  Similarity=0.394  Sum_probs=23.0

Q ss_pred             CCCCCCcceeccCCCcccccChhHHHHH-HHhhCCC
Q psy3483          35 SRPTKYQRYVCCLCSKYRHSDASKMRSH-IRTHTKD   69 (99)
Q Consensus        35 ~~~~~~~~~~c~~c~~~~~~~~~~~~~h-~~~~~~~   69 (99)
                      +.|++++||.|+.|++.|... ..|..| +..|+++
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~-~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITK-NCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECH-HHHHHHHHHHTCCC
T ss_pred             CccCCCcCeECCCCCcccCCH-HHHHHHHHHHccCc
Confidence            346677777777777766655 777777 6666653

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=3.1e-08  Score=40.44  Aligned_cols=33  Identities=21%  Similarity=0.550  Sum_probs=20.8

Q ss_pred             CCCCCcceeccCCCcccccChhHHHHHHHhhCCC
Q psy3483          36 RPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKD   69 (99)
Q Consensus        36 ~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~   69 (99)
                      .|+++++|.|.+|++.|... ..|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~-~~l~~H~~~H~~~   35 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSK-SNLKAHMNRHSTE   35 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCH-HHHHHHHHHSSTT
T ss_pred             CCCCCCCccCCCCCchhCCH-HHHHHHHHHhccC
Confidence            35566666777777655555 6666666666654

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.65  E-value=6.8e-09  Score=41.51  Aligned_cols=31  Identities=13%  Similarity=0.258  Sum_probs=26.2

Q ss_pred             ceeeCccccccccccchhhhccchhhccCCCCCCCcce
Q psy3483           6 LIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRY   43 (99)
Q Consensus         6 ~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~   43 (99)
                      +||.|..|++.|.... .|..|      +..|++++++
T Consensus         1 kp~~C~~C~k~f~~~~-~L~~H------~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSD-ALSKH------IKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHH-TTSSS------TTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHH-HHHHH------HHHHccCCCC
Confidence            4788999999998888 88888      8888888765

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=5.2e-08  Score=39.65  Aligned_cols=34  Identities=26%  Similarity=0.406  Sum_probs=24.4

Q ss_pred             CCCCCcceeccCCCcccccChhHHHHHHHhhCCCC
Q psy3483          36 RPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDR   70 (99)
Q Consensus        36 ~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~   70 (99)
                      .|+++++|.|.+|++.|... ..|..|+++|++++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~-~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSK-GTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSH-HHHHHHHHHHSSCC
T ss_pred             CCCCCCCeecCcCCCCcCch-HHHHHHHHHhcCCC
Confidence            45667777888888766665 77788887777653

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=8.6e-08  Score=39.04  Aligned_cols=32  Identities=22%  Similarity=0.506  Sum_probs=22.6

Q ss_pred             CCCCcceeccCCCcccccChhHHHHHHHhhCCC
Q psy3483          37 PTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKD   69 (99)
Q Consensus        37 ~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~   69 (99)
                      +.++++|.|..|++.|... ..|..|+++|+++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~-~~l~~H~~~H~~~   35 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFK-HSLQAHLRIHTNE   35 (36)
T ss_dssp             TSCCCCEECTTTCCEESSH-HHHHHHHHHHCCC
T ss_pred             CCCCCCEECCCCCceeCCH-HHHHHHHHHhCCC
Confidence            4566777777777766655 7777777777665

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.95  E-value=9.1e-09  Score=38.98  Aligned_cols=26  Identities=27%  Similarity=0.572  Sum_probs=22.0

Q ss_pred             CceecCCCCccccCchHHHHHHHHhc
Q psy3483          70 RPYKCFYCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        70 ~~~~C~~c~~~f~~~~~l~~H~~~~~   95 (99)
                      +||.|..|++.|.....|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            47889999999999999999988764

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.52  E-value=6.9e-08  Score=37.21  Aligned_cols=27  Identities=22%  Similarity=0.421  Sum_probs=23.5

Q ss_pred             CceecC--CCCccccCchHHHHHHHHhcC
Q psy3483          70 RPYKCF--YCDYRSNERSNVKAHMIRRHS   96 (99)
Q Consensus        70 ~~~~C~--~c~~~f~~~~~l~~H~~~~~~   96 (99)
                      +||.|.  .|++.|...+.|..|+++|+|
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            478899  999999999999999998875

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.40  E-value=1.5e-07  Score=40.85  Aligned_cols=36  Identities=31%  Similarity=0.510  Sum_probs=30.3

Q ss_pred             CCCCCCCcceecc--CCCcccccChhHHHHHHHhhCCCC
Q psy3483          34 VSRPTKYQRYVCC--LCSKYRHSDASKMRSHIRTHTKDR   70 (99)
Q Consensus        34 ~~~~~~~~~~~c~--~c~~~~~~~~~~~~~h~~~~~~~~   70 (99)
                      ...|+++++|.|.  .|++.|... ..|..|+++|++++
T Consensus        10 ~~~H~~~k~~~C~~~~C~k~F~~~-~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           10 YVKEMPDKTFECLFPGCTKTFKRR-YNIRSHIQTHLEDR   47 (47)
T ss_dssp             SCEEETTTEEECCCTTCCCEECSS-SSHHHHHHHHTTTC
T ss_pred             HhccCCCCCeECCCCCCCCccCCH-HHHHHHHHHccCCC
Confidence            4568889999995  799988887 89999999998864

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.40  E-value=2.3e-07  Score=38.08  Aligned_cols=32  Identities=34%  Similarity=0.697  Sum_probs=20.2

Q ss_pred             CCCCcceeccC--CCcccccChhHHHHHHHhhCCC
Q psy3483          37 PTKYQRYVCCL--CSKYRHSDASKMRSHIRTHTKD   69 (99)
Q Consensus        37 ~~~~~~~~c~~--c~~~~~~~~~~~~~h~~~~~~~   69 (99)
                      |+++++|.|..  |++.|... ..|..|+++|+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~-~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKT-SHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCH-HHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCH-HHHHHHHHhcCCC
Confidence            45566677763  77665555 6677777666654

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.34  E-value=4.8e-07  Score=34.71  Aligned_cols=27  Identities=22%  Similarity=0.469  Sum_probs=16.6

Q ss_pred             ceeccCCCcccccChhHHHHHHHhhCCC
Q psy3483          42 RYVCCLCSKYRHSDASKMRSHIRTHTKD   69 (99)
Q Consensus        42 ~~~c~~c~~~~~~~~~~~~~h~~~~~~~   69 (99)
                      +|.|..|++.|... ..|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~-~~l~~H~~~H~~~   28 (29)
T 1rik_A            2 KFACPECPKRFMRS-DHLTLHILLHENK   28 (29)
T ss_dssp             CEECSSSSCEESCS-HHHHHHHTGGGSC
T ss_pred             CccCCCCCchhCCH-HHHHHHHHHhcCC
Confidence            45666666655555 6666666666554

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.34  E-value=4.2e-07  Score=35.05  Aligned_cols=28  Identities=25%  Similarity=0.538  Sum_probs=15.2

Q ss_pred             cceeccCCCcccccChhHHHHHHHhhCCC
Q psy3483          41 QRYVCCLCSKYRHSDASKMRSHIRTHTKD   69 (99)
Q Consensus        41 ~~~~c~~c~~~~~~~~~~~~~h~~~~~~~   69 (99)
                      ++|.|..|++.|... ..|..|++.|+++
T Consensus         2 k~~~C~~C~~~f~~~-~~l~~H~~~h~~~   29 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDP-TSKMRHLETHDTD   29 (30)
T ss_dssp             CCEECTTTCCEESCH-HHHHHHHHTTCCC
T ss_pred             cCccCCCCCcccCCH-HHHHHHHHHhccC
Confidence            345566666554444 5555565555543

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.31  E-value=8.5e-07  Score=34.11  Aligned_cols=29  Identities=24%  Similarity=0.549  Sum_probs=21.8

Q ss_pred             ceeccCCCcccccChhHHHHHHHhhCCCCc
Q psy3483          42 RYVCCLCSKYRHSDASKMRSHIRTHTKDRP   71 (99)
Q Consensus        42 ~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~   71 (99)
                      +|.|..|++.|... ..|..|+.+|+++++
T Consensus         2 ~~~C~~C~k~f~~~-~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            2 TYQCQYCEFRSADS-SNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCSSSSCCCSCS-HHHHHHHHHHTSSCC
T ss_pred             CccCCCCCCccCCH-HHHHHHHHHHccCCC
Confidence            57788888877766 788888888776653

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.30  E-value=6.8e-07  Score=34.21  Aligned_cols=27  Identities=26%  Similarity=0.721  Sum_probs=19.9

Q ss_pred             ceeccCCCcccccChhHHHHHHHhhCCC
Q psy3483          42 RYVCCLCSKYRHSDASKMRSHIRTHTKD   69 (99)
Q Consensus        42 ~~~c~~c~~~~~~~~~~~~~h~~~~~~~   69 (99)
                      +|.|.+|++.|... ..|..|+++|+++
T Consensus         2 ~~~C~~C~~~f~~~-~~l~~H~~~h~~~   28 (29)
T 1ard_A            2 SFVCEVCTRAFARQ-EHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCTTTCCBCSSH-HHHHHHHHHHSCC
T ss_pred             CeECCCCCcccCCH-HHHHHHHHHhcCC
Confidence            56788888776665 7778888777765

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.29  E-value=1.1e-06  Score=41.09  Aligned_cols=32  Identities=9%  Similarity=0.175  Sum_probs=19.8

Q ss_pred             hCCCCceecCCCCccccCchHHHHHHHHhcCC
Q psy3483          66 HTKDRPYKCFYCDYRSNERSNVKAHMIRRHSV   97 (99)
Q Consensus        66 ~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~   97 (99)
                      +.+++||.|..|++.|....+|..|+++|+++
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~   39 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVT   39 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTT
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCC
Confidence            34556666666666666666666666666654

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.61  E-value=9.4e-08  Score=37.10  Aligned_cols=21  Identities=14%  Similarity=0.404  Sum_probs=14.0

Q ss_pred             ceeeCccccccccccchhhhcc
Q psy3483           6 LIVTCMYCSKILTYETETIMNH   27 (99)
Q Consensus         6 ~~~~c~~c~~~f~~~~~~~~~h   27 (99)
                      +||.|..|++.|.... .|..|
T Consensus         2 k~~~C~~C~k~f~~~~-~l~~H   22 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPG-ALQRH   22 (30)
Confidence            5666777777776666 66666

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.28  E-value=1.3e-06  Score=34.33  Aligned_cols=28  Identities=21%  Similarity=0.446  Sum_probs=17.6

Q ss_pred             cceecc--CCCcccccChhHHHHHHHhhCCC
Q psy3483          41 QRYVCC--LCSKYRHSDASKMRSHIRTHTKD   69 (99)
Q Consensus        41 ~~~~c~--~c~~~~~~~~~~~~~h~~~~~~~   69 (99)
                      ++|.|.  .|++.|... ..|..|+++|+++
T Consensus         2 k~~~C~~~~C~k~f~~~-~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRN-HDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSS-HHHHHHHGGGTCC
T ss_pred             CCCcCcCCCCCCccCCH-HHHHHHHHHccCC
Confidence            456666  666666555 6666666666654

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.28  E-value=2.1e-07  Score=35.54  Aligned_cols=21  Identities=19%  Similarity=0.456  Sum_probs=11.5

Q ss_pred             ceeeCccccccccccchhhhcc
Q psy3483           6 LIVTCMYCSKILTYETETIMNH   27 (99)
Q Consensus         6 ~~~~c~~c~~~f~~~~~~~~~h   27 (99)
                      +||.|+.|++.|.... .|..|
T Consensus         2 k~~~C~~C~k~f~~~~-~l~~H   22 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKH-QMETH   22 (28)
T ss_dssp             CSEECSSSCCEESCHH-HHHHH
T ss_pred             cCccCCCCCcccCCHH-HHHHH
Confidence            4555555555555555 55555

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.25  E-value=8.4e-07  Score=33.84  Aligned_cols=27  Identities=22%  Similarity=0.492  Sum_probs=19.7

Q ss_pred             ceeccCCCcccccChhHHHHHHHhhCCC
Q psy3483          42 RYVCCLCSKYRHSDASKMRSHIRTHTKD   69 (99)
Q Consensus        42 ~~~c~~c~~~~~~~~~~~~~h~~~~~~~   69 (99)
                      +|.|..|++.|... ..|..|+++|+++
T Consensus         2 ~~~C~~C~~~f~~~-~~l~~H~~~h~~~   28 (29)
T 2m0e_A            2 EHKCPHCDKKFNQV-GNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCSSCCCCCCTT-THHHHHHHHHHSC
T ss_pred             CCcCCCCCcccCCH-HHHHHHHHHhccC
Confidence            56777888776666 7777787777665

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.57  E-value=1.3e-07  Score=36.51  Aligned_cols=20  Identities=25%  Similarity=0.690  Sum_probs=12.4

Q ss_pred             eeeCccccccccccchhhhcc
Q psy3483           7 IVTCMYCSKILTYETETIMNH   27 (99)
Q Consensus         7 ~~~c~~c~~~f~~~~~~~~~h   27 (99)
                      ||.|..|++.|.... .|..|
T Consensus         2 ~~~C~~C~k~f~~~~-~l~~H   21 (29)
T 2lvt_A            2 PCQCVMCGKAFTQAS-SLIAH   21 (29)
Confidence            566666666666655 56666

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.24  E-value=6.1e-07  Score=34.32  Aligned_cols=27  Identities=22%  Similarity=0.548  Sum_probs=19.4

Q ss_pred             ceeccCCCcccccChhHHHHHHHhhCCC
Q psy3483          42 RYVCCLCSKYRHSDASKMRSHIRTHTKD   69 (99)
Q Consensus        42 ~~~c~~c~~~~~~~~~~~~~h~~~~~~~   69 (99)
                      +|.|.+|++.|... ..|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~-~~l~~H~~~H~~~   28 (29)
T 2m0f_A            2 PLKCRECGKQFTTS-GNLKRHLRIHSGE   28 (29)
T ss_dssp             CEECTTTSCEESCH-HHHHHHHHHHHTC
T ss_pred             CccCCCCCCccCCh-hHHHHHHHHhcCC
Confidence            56777888766655 7777787777665

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.23  E-value=2e-07  Score=35.46  Aligned_cols=21  Identities=14%  Similarity=0.217  Sum_probs=12.2

Q ss_pred             ceeeCccccccccccchhhhcc
Q psy3483           6 LIVTCMYCSKILTYETETIMNH   27 (99)
Q Consensus         6 ~~~~c~~c~~~f~~~~~~~~~h   27 (99)
                      +||.|+.|++.|.... .|..|
T Consensus         2 k~~~C~~C~k~f~~~~-~l~~H   22 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLA-SMQAH   22 (27)
T ss_dssp             CTEEETTTTEEESCHH-HHHHH
T ss_pred             cCcCCCCCCcccCCHH-HHHHH
Confidence            4566666666665555 55555

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.18  E-value=1.2e-06  Score=34.21  Aligned_cols=27  Identities=30%  Similarity=0.666  Sum_probs=13.3

Q ss_pred             ceecc--CCCcccccChhHHHHHHHhhCCC
Q psy3483          42 RYVCC--LCSKYRHSDASKMRSHIRTHTKD   69 (99)
Q Consensus        42 ~~~c~--~c~~~~~~~~~~~~~h~~~~~~~   69 (99)
                      ||.|.  .|++.|... ..|..|+++|+++
T Consensus         2 p~~C~~~~C~k~f~~~-~~L~~H~~~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRS-DELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSH-HHHHHHHTTTSCC
T ss_pred             CcCCcCCCCCcccCCH-hHHHHHHHHhcCC
Confidence            34454  555544444 5555555555443

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.13  E-value=1.7e-06  Score=32.60  Aligned_cols=24  Identities=38%  Similarity=0.761  Sum_probs=11.0

Q ss_pred             ceeccCCCcccccChhHHHHHHHhh
Q psy3483          42 RYVCCLCSKYRHSDASKMRSHIRTH   66 (99)
Q Consensus        42 ~~~c~~c~~~~~~~~~~~~~h~~~~   66 (99)
                      +|.|..|++.|... ..|..|+++|
T Consensus         3 ~~~C~~C~k~f~~~-~~l~~H~~~H   26 (27)
T 2kvh_A            3 PFSCSLCPQRSRDF-SAMTKHLRTH   26 (27)
T ss_dssp             CEECSSSSCEESSH-HHHHHHHHHC
T ss_pred             CccCCCcChhhCCH-HHHHHHHHHc
Confidence            44455555444433 4444444443

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.12  E-value=1.8e-06  Score=33.25  Aligned_cols=27  Identities=22%  Similarity=0.533  Sum_probs=16.7

Q ss_pred             ceeccCCCcccccChhHHHHH-HHhhCCC
Q psy3483          42 RYVCCLCSKYRHSDASKMRSH-IRTHTKD   69 (99)
Q Consensus        42 ~~~c~~c~~~~~~~~~~~~~h-~~~~~~~   69 (99)
                      +|.|..|++.|... ..|..| +.+|+++
T Consensus         2 ~~~C~~C~k~f~~~-~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLCNRAFTRR-DLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTTCCBCSSS-HHHHHHHTTTSCCC
T ss_pred             CcCCcccCcccCCh-HHHHHHHHHHccCC
Confidence            45666676666555 666666 4566554

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.36  E-value=4.4e-07  Score=34.03  Aligned_cols=21  Identities=24%  Similarity=0.453  Sum_probs=14.5

Q ss_pred             ceeeCccccccccccchhhhcc
Q psy3483           6 LIVTCMYCSKILTYETETIMNH   27 (99)
Q Consensus         6 ~~~~c~~c~~~f~~~~~~~~~h   27 (99)
                      +||.|+.|++.|.... .|..|
T Consensus         1 kp~~C~~C~k~f~~~~-~l~~H   21 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSS-QLANH   21 (26)
Confidence            4667777777777666 66666

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.08  E-value=7.3e-07  Score=33.58  Aligned_cols=24  Identities=33%  Similarity=0.649  Sum_probs=10.8

Q ss_pred             eeccCCCcccccChhHHHHHHHhhC
Q psy3483          43 YVCCLCSKYRHSDASKMRSHIRTHT   67 (99)
Q Consensus        43 ~~c~~c~~~~~~~~~~~~~h~~~~~   67 (99)
                      |.|.+|++.|... ..|..|+++|+
T Consensus         2 ~~C~~C~k~f~~~-~~l~~H~~~h~   25 (27)
T 1znf_A            2 YKCGLCERSFVEK-SALSRHQRVHK   25 (27)
T ss_dssp             CBCSSSCCBCSSH-HHHHHHGGGTC
T ss_pred             ccCCCCCCcCCCH-HHHHHHHHHcC
Confidence            3444454444333 44444444443

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.76  E-value=1.6e-05  Score=30.04  Aligned_cols=25  Identities=32%  Similarity=0.636  Sum_probs=13.8

Q ss_pred             ceecc--CCCcccccChhHHHHHHHhhC
Q psy3483          42 RYVCC--LCSKYRHSDASKMRSHIRTHT   67 (99)
Q Consensus        42 ~~~c~--~c~~~~~~~~~~~~~h~~~~~   67 (99)
                      +|.|.  .|++.|... ..|..|+++|+
T Consensus         2 ~~~C~~~~C~k~f~~~-~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDR-RKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSH-HHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCH-HHHHHHHHHhC
Confidence            35555  666654444 55666655554

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.75  E-value=0.00012  Score=33.83  Aligned_cols=49  Identities=18%  Similarity=0.468  Sum_probs=38.1

Q ss_pred             ccCCCcccccChhHHHHHH-HhhCCCC------ceecC--CCCccccCchHHHHHHHHh
Q psy3483          45 CCLCSKYRHSDASKMRSHI-RTHTKDR------PYKCF--YCDYRSNERSNVKAHMIRR   94 (99)
Q Consensus        45 c~~c~~~~~~~~~~~~~h~-~~~~~~~------~~~C~--~c~~~f~~~~~l~~H~~~~   94 (99)
                      ...|++.|... ..|..|+ ..|.+.+      +|.|.  .|++.+.....|..|++..
T Consensus         6 W~~C~~~f~~~-~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            6 WKECPESASSL-FDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CTTCCCCCSSH-HHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             eCCCCCcCCCH-HHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            34577766665 8888887 4677665      79997  8999888888999998865

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.63  E-value=7.5e-06  Score=42.68  Aligned_cols=31  Identities=16%  Similarity=0.301  Sum_probs=26.4

Q ss_pred             HhhCCCCceecCCCCccccCchHHHHHHHHh
Q psy3483          64 RTHTKDRPYKCFYCDYRSNERSNVKAHMIRR   94 (99)
Q Consensus        64 ~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~   94 (99)
                      ..++|+++|.|..|++.|...+.|..|+++.
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            3578889999999999999999999997743

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.20  E-value=6.7e-05  Score=39.12  Aligned_cols=26  Identities=15%  Similarity=0.374  Sum_probs=13.3

Q ss_pred             CCCCcceeccCCCcccccChhHHHHHH
Q psy3483          37 PTKYQRYVCCLCSKYRHSDASKMRSHI   63 (99)
Q Consensus        37 ~~~~~~~~c~~c~~~~~~~~~~~~~h~   63 (99)
                      ++|+++|.|..|++.|... ..|..|+
T Consensus        45 ~tGekpfyC~~C~K~F~~~-~~L~~H~   70 (124)
T 1zr9_A           45 LPGGGLHRCLACARYFIDS-TNLKTHF   70 (124)
T ss_dssp             SGGGGCSEETTTTEECSSH-HHHHHHT
T ss_pred             CCCCcceEcccCcchhCCH-HHHHHHH
Confidence            4555555555555544444 5555553

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.69  E-value=0.0028  Score=27.19  Aligned_cols=22  Identities=18%  Similarity=0.354  Sum_probs=10.7

Q ss_pred             ceecCCCCccccCchHHHHHHH
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMI   92 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~   92 (99)
                      +|.|+.|+..|.....|..|++
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhhh
Confidence            3444445444444444444444

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.90  E-value=0.034  Score=30.31  Aligned_cols=55  Identities=15%  Similarity=0.147  Sum_probs=42.0

Q ss_pred             cceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHHHHHhcCCC
Q psy3483          41 QRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        41 ~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      .+..|+.|+..+ .. ..+..|....-..++..|..|+..+. ...+..|....+|+.
T Consensus       109 ~~v~C~~C~~~~-~r-~~l~~H~~~~C~~r~~~C~~C~~~~~-~~~l~~H~~~~~~~~  163 (170)
T 3hcs_A          109 ALMDCPQCQRPF-QK-FHINIHILKDCPRRQVSCDNCAASMA-FEDKEIHDQNCPLAL  163 (170)
T ss_dssp             SEEECTTTCCEE-EG-GGHHHHHHHTCTTCEEECTTTCCEEE-GGGHHHHHTTCCC--
T ss_pred             eeeECCCCChHH-HH-HHHHHHhhhhCCCCCeECCCCCCccC-HHHHHhHHHhCcChh
Confidence            456788898744 34 77899988888888899999988764 457889998888764

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=95.70  E-value=0.017  Score=23.25  Aligned_cols=31  Identities=26%  Similarity=0.151  Sum_probs=23.0

Q ss_pred             CCceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          69 DRPYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        69 ~~~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      ...+.|..|+-.|....++..|.+-....+|
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHKk~YC~s~p   36 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHKQFYCKNKP   36 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHHHHTSCCCC
T ss_pred             cCcCeeccccceehhhHHHhhhheecCCCCC
Confidence            3467888888888888888888876655444

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=95.66  E-value=0.0064  Score=27.86  Aligned_cols=49  Identities=12%  Similarity=0.215  Sum_probs=34.5

Q ss_pred             ccccccccccchhhhccchhhccCCCCCCCc------ceecc--CCCcccccChhHHHHHHHhh
Q psy3483          11 MYCSKILTYETETIMNHCKFCKAVSRPTKYQ------RYVCC--LCSKYRHSDASKMRSHIRTH   66 (99)
Q Consensus        11 ~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~------~~~c~--~c~~~~~~~~~~~~~h~~~~   66 (99)
                      ..|++.|.... .|..|+.     ..|.+.+      +|.|.  .|+..+... ..|..|+++.
T Consensus         7 ~~C~~~f~~~~-~l~~Hv~-----~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~-~~L~~Hir~~   63 (64)
T 1zw8_A            7 KECPESASSLF-DLQRHLL-----KDHVSQDFKHPMEPLACNWEDCDFLGDDT-ASIVNHINAQ   63 (64)
T ss_dssp             TTCCCCCSSHH-HHHHHHH-----HHSCCCCCCCSSCCEECCCSSCCCEESSH-HHHHHHHHHH
T ss_pred             CCCCCcCCCHH-HHHHHHH-----hhccCcccCCCCCCCEeeCCCCcCCCCCh-HHHHhhcccc
Confidence            56999999887 8888831     2444333      68886  898866555 7888888753

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.30  E-value=0.026  Score=29.49  Aligned_cols=27  Identities=22%  Similarity=0.393  Sum_probs=23.3

Q ss_pred             hCCCCceecCCCCccccCchHHHHHHH
Q psy3483          66 HTKDRPYKCFYCDYRSNERSNVKAHMI   92 (99)
Q Consensus        66 ~~~~~~~~C~~c~~~f~~~~~l~~H~~   92 (99)
                      +.+...|.|..|+..|.....+..|..
T Consensus        88 ~~~~~~~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           88 DGEDRSKCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             SCCCTTTEETTTTEECSSHHHHHHHHT
T ss_pred             cCCCCCeEcCCCCCEeCCHHHHHHHHC
Confidence            456778999999999999999999865

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=94.33  E-value=0.066  Score=21.35  Aligned_cols=22  Identities=14%  Similarity=0.215  Sum_probs=16.7

Q ss_pred             ceecCCCCccccCchHHHHHHH
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMI   92 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~   92 (99)
                      .|.|+.|.+.|.....|..|-.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye   26 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYE   26 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHH
T ss_pred             ccCCcHHHHHcCCHHHHHHHHH
Confidence            4778888888888888887733

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=92.99  E-value=0.06  Score=29.29  Aligned_cols=57  Identities=12%  Similarity=0.167  Sum_probs=36.4

Q ss_pred             ceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhhCCCCce
Q psy3483           6 LIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPY   72 (99)
Q Consensus         6 ~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~   72 (99)
                      .+..|+.|+..+...  .+..|      ....-..+...|..|+..+ .. ..+..|+.+..|+.++
T Consensus       109 ~~v~C~~C~~~~~r~--~l~~H------~~~~C~~r~~~C~~C~~~~-~~-~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          109 ALMDCPQCQRPFQKF--HINIH------ILKDCPRRQVSCDNCAASM-AF-EDKEIHDQNCPLALEH  165 (170)
T ss_dssp             SEEECTTTCCEEEGG--GHHHH------HHHTCTTCEEECTTTCCEE-EG-GGHHHHHTTCCC----
T ss_pred             eeeECCCCChHHHHH--HHHHH------hhhhCCCCCeECCCCCCcc-CH-HHHHhHHHhCcChhhh
Confidence            356788888877443  56666      3333344566799999844 34 7789999998888665

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=92.91  E-value=0.14  Score=24.50  Aligned_cols=39  Identities=21%  Similarity=0.443  Sum_probs=18.3

Q ss_pred             eeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccc
Q psy3483           7 IVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRH   53 (99)
Q Consensus         7 ~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~   53 (99)
                      .|.|..|+.+++-.  .+..|..-|+      +...+.|..|+..|.
T Consensus        10 ~F~C~~Cgd~lKK~--kv~~H~~~Cr------~~~~~SCIDC~~~F~   48 (79)
T 1wjv_A           10 FFTCNACGESVKKI--QVEKHVSNCR------NCECLSCIDCGKDFW   48 (79)
T ss_dssp             EEEESSSCCEEETT--HHHHHHHHCT------TCCEEEETTTTEEEE
T ss_pred             EEEcCCCCCeeecc--cchhHHhhCC------CCCcEEecccCCeeC
Confidence            45666666655432  3444421111      222355666666543

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=92.46  E-value=0.087  Score=25.68  Aligned_cols=25  Identities=28%  Similarity=0.572  Sum_probs=13.4

Q ss_pred             eeccCCCcccccChhHHHHHHHhhCCCCc
Q psy3483          43 YVCCLCSKYRHSDASKMRSHIRTHTKDRP   71 (99)
Q Consensus        43 ~~c~~c~~~~~~~~~~~~~h~~~~~~~~~   71 (99)
                      ..|-+||+.|.    .|..|+..+.|-.|
T Consensus        22 iiClecGK~fK----~LkRHL~~~hgltp   46 (87)
T 2jsp_A           22 IVCLECGGSFK----SLKRHLTTHHSMTP   46 (87)
T ss_dssp             EECTBTCCEES----BHHHHHHHTTCSCH
T ss_pred             eEecccchhhH----HHHHHHHHccCCCH
Confidence            45666666433    24466666555544

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=86.82  E-value=0.64  Score=19.83  Aligned_cols=15  Identities=33%  Similarity=0.529  Sum_probs=10.0

Q ss_pred             eeeCccccccccccc
Q psy3483           7 IVTCMYCSKILTYET   21 (99)
Q Consensus         7 ~~~c~~c~~~f~~~~   21 (99)
                      -|.|.-||+.|....
T Consensus         3 iY~C~rCg~~fs~~e   17 (48)
T 4ayb_P            3 VYRCGKCWKTFTDEQ   17 (48)
T ss_dssp             --CCCCTTTTCCCCC
T ss_pred             EEEeeccCCCccHHH
Confidence            477888888887554

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=86.20  E-value=0.55  Score=18.26  Aligned_cols=24  Identities=17%  Similarity=0.451  Sum_probs=18.8

Q ss_pred             ceecCCCCccccCchHHHHHHHHh
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMIRR   94 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~~~   94 (99)
                      .-.|..|.+.++.-.+|..|.+.-
T Consensus         9 kqhcrfckkkysdvknlikhire~   32 (37)
T 2elu_A            9 KQHCRFCKKKYSDVKNLIKHIRDA   32 (37)
T ss_dssp             CCEETTTTEECSSHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456888888888888888887743

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=85.81  E-value=1  Score=18.44  Aligned_cols=21  Identities=19%  Similarity=0.219  Sum_probs=10.8

Q ss_pred             ceecCCCCccccCchHHHHHHH
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMI   92 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~   92 (99)
                      .+.|..|+..+.. ..+..|.-
T Consensus         9 ~~~C~~C~~~i~~-~~~~EH~D   29 (39)
T 2i5o_A            9 QVPCEKCGSLVPV-WDMPEHMD   29 (39)
T ss_dssp             EEECTTTCCEEEG-GGHHHHHH
T ss_pred             CcccccccCcCCc-ccccchhh
Confidence            4556666665554 33444443

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=85.54  E-value=0.76  Score=23.20  Aligned_cols=28  Identities=18%  Similarity=0.362  Sum_probs=16.7

Q ss_pred             cceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCcc
Q psy3483          41 QRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYR   80 (99)
Q Consensus        41 ~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~   80 (99)
                      .++.|..||..| ..           ...+|-.|+.|+.-
T Consensus        66 ~p~~C~~CG~~F-~~-----------~~~kPsrCP~CkSe   93 (105)
T 2gmg_A           66 KPAQCRKCGFVF-KA-----------EINIPSRCPKCKSE   93 (105)
T ss_dssp             CCCBBTTTCCBC-CC-----------CSSCCSSCSSSCCC
T ss_pred             ECcChhhCcCee-cc-----------cCCCCCCCcCCCCC
Confidence            456777777755 11           22456777777643

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=85.54  E-value=0.76  Score=17.36  Aligned_cols=22  Identities=18%  Similarity=0.662  Sum_probs=16.1

Q ss_pred             ceecCCCCccccCchHHHHHHH
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMI   92 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~   92 (99)
                      .+.|+.|.........+..|..
T Consensus         3 k~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            3 DFCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             CEECTTSSCEESSHHHHHHHHH
T ss_pred             cccCccccccCcChHHHHHHHH
Confidence            3778888877777777777743

>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=85.22  E-value=1.1  Score=20.95  Aligned_cols=30  Identities=23%  Similarity=0.572  Sum_probs=19.7

Q ss_pred             ceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCcccc
Q psy3483          42 RYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSN   82 (99)
Q Consensus        42 ~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~   82 (99)
                      .|.|+.|++. ...          ..+.-.|.|..|++.|.
T Consensus        26 ky~C~fCgk~-~vk----------R~a~GIW~C~~C~~~~A   55 (72)
T 3jyw_9           26 RYDCSFCGKK-TVK----------RGAAGIWTCSCCKKTVA   55 (72)
T ss_dssp             CBCCSSCCSS-CBS----------BCSSSCBCCSSSCCCCC
T ss_pred             CccCCCCCCc-eeE----------ecCCCeEECCCCCCEEe
Confidence            4789999874 222          12344689999988765

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=84.93  E-value=0.26  Score=23.79  Aligned_cols=30  Identities=27%  Similarity=0.645  Sum_probs=17.6

Q ss_pred             ceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCcccc
Q psy3483          42 RYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSN   82 (99)
Q Consensus        42 ~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~   82 (99)
                      .|.|+.||......           .+...|.|..|+..|.
T Consensus        27 ~y~Cp~CG~~~v~r-----------~atGiW~C~~Cg~~~a   56 (83)
T 1vq8_Z           27 DHACPNCGEDRVDR-----------QGTGIWQCSYCDYKFT   56 (83)
T ss_dssp             CEECSSSCCEEEEE-----------EETTEEEETTTCCEEE
T ss_pred             cCcCCCCCCcceec-----------cCCCeEECCCCCCEec
Confidence            46788887632211           2233588888877654

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=84.76  E-value=0.24  Score=23.79  Aligned_cols=13  Identities=23%  Similarity=0.386  Sum_probs=9.7

Q ss_pred             CceecCCCCcccc
Q psy3483          70 RPYKCFYCDYRSN   82 (99)
Q Consensus        70 ~~~~C~~c~~~f~   82 (99)
                      -.|+|+.||.-|-
T Consensus        50 F~FkCP~CgEEFy   62 (95)
T 2k5c_A           50 FVFKCPVCGEEFY   62 (95)
T ss_dssp             SEEECTTTCCEEE
T ss_pred             HhhcCCCccHHHh
Confidence            3589999987654

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=83.90  E-value=0.43  Score=26.93  Aligned_cols=27  Identities=19%  Similarity=0.338  Sum_probs=19.9

Q ss_pred             CCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCc
Q psy3483          39 KYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDY   79 (99)
Q Consensus        39 ~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~   79 (99)
                      ....|.|.+||..+.              |..|+.|+.|+-
T Consensus       168 ~~~~~~C~~CG~i~~--------------g~~p~~CP~C~~  194 (202)
T 1yuz_A          168 DDKFHLCPICGYIHK--------------GEDFEKCPICFR  194 (202)
T ss_dssp             SCCEEECSSSCCEEE--------------SSCCSBCTTTCC
T ss_pred             CCcEEEECCCCCEEc--------------CcCCCCCCCCCC
Confidence            335699999997422              256899999985

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=82.50  E-value=1.2  Score=25.26  Aligned_cols=26  Identities=23%  Similarity=0.488  Sum_probs=22.5

Q ss_pred             CCceecCCCCccccC-chHHHHHHHHh
Q psy3483          69 DRPYKCFYCDYRSNE-RSNVKAHMIRR   94 (99)
Q Consensus        69 ~~~~~C~~c~~~f~~-~~~l~~H~~~~   94 (99)
                      ..|..|..|+..|.+ ...|..|+..+
T Consensus       167 ~~~L~C~~C~~~f~n~~~~LK~HL~~e  193 (204)
T 3sp4_A          167 QEDLKCWRCGETFGRHFTKLKAHLQEE  193 (204)
T ss_dssp             GSCCBCTTTCCBCTTCHHHHHHHHHHH
T ss_pred             CCCceeCCCCchhhcccHHHHHHHHHH
Confidence            558999999999987 88999998765

>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z

Probab=80.03  E-value=0.52  Score=24.22  Aligned_cols=30  Identities=27%  Similarity=0.645  Sum_probs=19.3

Q ss_pred             ceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCcccc
Q psy3483          42 RYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSN   82 (99)
Q Consensus        42 ~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~   82 (99)
                      .|.|+.||+.....           .+.-.|.|..|++.|.
T Consensus        60 kytCPfCGk~~vKR-----------~avGIW~C~~Cgk~fA   89 (116)
T 3cc2_Z           60 DHACPNCGEDRVDR-----------QGTGIWQCSYCDYKFT   89 (116)
T ss_dssp             CEECSSSCCEEEEE-----------EETTEEEETTTCCEEE
T ss_pred             CCcCCCCCCceeEe-----------cCceeEECCCCCCEEE
Confidence            47899998732211           1123689999988765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	99
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	5e-06
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	8e-04
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	0.001
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	0.001
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	0.003

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (89), Expect = 5e-06
 Identities = 11/33 (33%), Positives = 23/33 (69%)

Query: 64 RTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
          RTH+ ++PY+C+ C  R  +   +K H++++H+
Sbjct: 1  RTHSGEKPYECYICHARFTQSGTMKMHILQKHT 33

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (74), Expect = 8e-04
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 64 RTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
          RTHT ++PY C +CD    ++  +  H  +R+ 
Sbjct: 1  RTHTGEKPYACSHCDKTFRQKQLLDMHF-KRYH 32

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.0 bits (73), Expect = 0.001
 Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRH 95
            R  T  +P++C  CD   +   ++  H  +RH
Sbjct: 2  STRGSTGIKPFQCPDCDRSFSRSDHLALHR-KRH 34

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.1 bits (73), Expect = 0.001
 Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
                + R YKC  C    +  S++  H  R H+
Sbjct: 3  SEWQQRERRRYKCDECGKSFSHSSDLSKHR-RTHT 36

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.3 bits (69), Expect = 0.003
 Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 66 HTKDRPYKCFYCDYRSNERSNVKAHMIRRHS 96
          H+ ++PY C  C    +  S +  H  R H+
Sbjct: 2  HSGEKPYGCVECGKAFSRSSILVQHQ-RVHT 31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	99
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.78
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.66
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.62
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.59
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.53
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.49
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.48
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.48
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.47
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.46
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.42
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.42
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.4
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.33
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.3
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.29
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.29
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.25
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.23
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.23
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.23
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.16
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.13
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.05
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.04
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.04
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.01
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.01
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.97
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.94
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.92
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.9
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.83
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.75
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.68
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.62
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.61
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.59
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.59
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.58
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.56
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.45
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.38
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.35
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.31
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.25
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.24
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.2
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.18
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.12
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	98.04
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	98.02
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	98.01
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.0
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.97
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.95
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.93
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.92
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.92
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.83
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.82
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.74
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.73
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.72
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.67
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.65
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.62
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.53
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.53
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.51
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.5
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.47
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.38
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.31
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.21
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.19
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.14
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.11
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.92
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.8
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.62
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.56
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.46
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	95.87
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.62
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.29
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.18
d1fu9a_	36	U-shaped transcription factor, different fingers {	94.9
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	94.44
d1y0jb1	36	U-shaped transcription factor, different fingers {	94.27
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	94.1
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	93.3
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	92.93
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	92.68
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	92.51
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	92.28
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	92.17
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	89.66
d2dkta1	74	RING finger and CHY zinc finger domain-containing	88.4
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	86.61
d1wfka_	88	Zinc finger FYVE domain containing protein 19 {Mou	82.14
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	80.65
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	80.52
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	80.09

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.8e-19  Score=80.69  Aligned_cols=53  Identities=26%  Similarity=0.468  Sum_probs=48.9

Q ss_pred             CcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCccccCchHHHHHHHHh
Q psy3483          40 YQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRR   94 (99)
Q Consensus        40 ~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~   94 (99)
                      +++|.| .||+.|... ..|..|+++|++++||.|..|++.|...++|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~-~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHK-SQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSH-HHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCH-HHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            578999 599987777 99999999999999999999999999999999999876

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6.1e-18  Score=75.62  Aligned_cols=53  Identities=23%  Similarity=0.467  Sum_probs=49.3

Q ss_pred             CceeeCccccccccccchhhhccchhhccCCCCCCCcceeccCCCcccccChhHHHHHHHhh
Q psy3483           5 ELIVTCMYCSKILTYETETIMNHCKFCKAVSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTH   66 (99)
Q Consensus         5 ~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~   66 (99)
                      |+||+| .||+.|.... .|..|      ++.|++++||.|.+||+.|... +.|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~-~l~~H------~~~Ht~ekpy~C~~C~k~F~~~-~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKS-QRDRH------MSMHLGLRPYGCGVCGKKFKMK-HHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHH-HHHHH------HHHHSCCCSEECTTTSCEESSS-HHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHH-HhHHH------hhccccccCCcCCCcCCEecCH-HHHHHHHhcC
Confidence            689999 5999999999 99999      8999999999999999998888 9999999875

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.1e-16  Score=63.15  Aligned_cols=33  Identities=21%  Similarity=0.408  Sum_probs=31.4

Q ss_pred             hhCCCCceecCCCCccccCchHHHHHHHHhcCC
Q psy3483          65 THTKDRPYKCFYCDYRSNERSNVKAHMIRRHSV   97 (99)
Q Consensus        65 ~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~   97 (99)
                      +|++++||.|.+|++.|...++|..|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            489999999999999999999999999999997

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=7.5e-17  Score=66.88  Aligned_cols=36  Identities=19%  Similarity=0.284  Sum_probs=32.6

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcCC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSV   97 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~   97 (99)
                      |+.+|++++||.|.+||+.|...++|..|+++|+||
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            567889999999999999999999999999999986

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.5e-15  Score=60.97  Aligned_cols=35  Identities=34%  Similarity=0.667  Sum_probs=32.1

Q ss_pred             HhhCCCCceecCCCCccccCchHHHHHHHHhcCCC
Q psy3483          64 RTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        64 ~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      ++|+|++||+|.+|++.|...++|..|+++|+++.
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            47899999999999999999999999999998764

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.49  E-value=1.1e-14  Score=56.58  Aligned_cols=29  Identities=21%  Similarity=0.396  Sum_probs=27.7

Q ss_pred             CceecCCCCccccCchHHHHHHHHhcCCC
Q psy3483          70 RPYKCFYCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        70 ~~~~C~~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      +||.|..|++.|...++|..|+++|+|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            68999999999999999999999999986

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=1.7e-14  Score=58.23  Aligned_cols=32  Identities=19%  Similarity=0.404  Sum_probs=29.7

Q ss_pred             hCCCCceecCCCCccccCchHHHHHHHHhcCC
Q psy3483          66 HTKDRPYKCFYCDYRSNERSNVKAHMIRRHSV   97 (99)
Q Consensus        66 ~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~   97 (99)
                      |+|++||.|..|++.|...++|..|+++|+++
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            68999999999999999999999999999875

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.9e-14  Score=55.79  Aligned_cols=29  Identities=17%  Similarity=0.392  Sum_probs=27.5

Q ss_pred             CceecCCCCccccCchHHHHHHHHhcCCC
Q psy3483          70 RPYKCFYCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        70 ~~~~C~~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      +||.|.+|++.|..+++|..|+++|+|||
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            68999999999999999999999999986

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=6.1e-15  Score=60.61  Aligned_cols=35  Identities=23%  Similarity=0.387  Sum_probs=30.6

Q ss_pred             HHHhhCCCCceecCCCCccccCchHHHHHHHHhcC
Q psy3483          62 HIRTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHS   96 (99)
Q Consensus        62 h~~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~   96 (99)
                      |.++|++++||.|.+|++.|...++|..|+++|.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            45788999999999999999999999999998864

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=2.5e-14  Score=54.93  Aligned_cols=28  Identities=14%  Similarity=0.495  Sum_probs=26.8

Q ss_pred             CCceecCCCCccccCchHHHHHHHHhcC
Q psy3483          69 DRPYKCFYCDYRSNERSNVKAHMIRRHS   96 (99)
Q Consensus        69 ~~~~~C~~c~~~f~~~~~l~~H~~~~~~   96 (99)
                      |+||.|..|++.|..+++|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6899999999999999999999999987

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=8.2e-15  Score=58.45  Aligned_cols=26  Identities=23%  Similarity=0.507  Sum_probs=16.1

Q ss_pred             CCCCCceeeCccccccccccchhhhcc
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNH   27 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h   27 (99)
                      ||+|++||.|.+|++.|.... .|..|
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~-~L~~H   26 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSS-ILVQH   26 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHH-HHHHH
T ss_pred             CcCCCCCeeCCCCCCEeCchH-HhHhh
Confidence            466666666666666666665 56666

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=6.7e-14  Score=57.00  Aligned_cols=34  Identities=32%  Similarity=0.894  Sum_probs=29.5

Q ss_pred             HhhCCCCceecCCCCccccCchHHHHHHHHhcCC
Q psy3483          64 RTHTKDRPYKCFYCDYRSNERSNVKAHMIRRHSV   97 (99)
Q Consensus        64 ~~~~~~~~~~C~~c~~~f~~~~~l~~H~~~~~~~   97 (99)
                      ++|+|++||.|..|++.|...++|..|++.++++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            3689999999999999999999999998765544

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.2e-13  Score=56.99  Aligned_cols=35  Identities=34%  Similarity=0.687  Sum_probs=19.2

Q ss_pred             CcceeccCCCcccccChhHHHHHHH-hhCCCCceecC
Q psy3483          40 YQRYVCCLCSKYRHSDASKMRSHIR-THTKDRPYKCF   75 (99)
Q Consensus        40 ~~~~~c~~c~~~~~~~~~~~~~h~~-~~~~~~~~~C~   75 (99)
                      ++||.|.+||+.|... +.|..|++ +|++++||.|.
T Consensus         3 ~Kpy~C~~Cgk~F~~~-~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           3 GKPYICQSCGKGFSRP-DHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SCCEECSSSCCEESSH-HHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCccCCCCCCCcCCh-HHhhccCcCccCCCcCcCCc
Confidence            3555566666554444 55555543 45666665554

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.6e-14  Score=58.61  Aligned_cols=38  Identities=18%  Similarity=0.262  Sum_probs=34.4

Q ss_pred             CCCceeeCccccccccccchhhhccchhhccCC-CCCCCcceeccC
Q psy3483           3 STELIVTCMYCSKILTYETETIMNHCKFCKAVS-RPTKYQRYVCCL   47 (99)
Q Consensus         3 ~~~~~~~c~~c~~~f~~~~~~~~~h~~~~~~~~-~~~~~~~~~c~~   47 (99)
                      +.++||.|..||+.|.... .|..|      ++ .|++++||.|.+
T Consensus         1 s~~Kpy~C~~Cgk~F~~~~-~L~~H------~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           1 SVGKPYICQSCGKGFSRPD-HLNGH------IKQVHTSERPHKCQV   39 (39)
T ss_dssp             CSSCCEECSSSCCEESSHH-HHHHH------HHHTSCCCCCCCSSS
T ss_pred             CCCCCccCCCCCCCcCChH-Hhhcc------CcCccCCCcCcCCcC
Confidence            4689999999999999999 99999      75 799999999974

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.6e-13  Score=50.16  Aligned_cols=26  Identities=27%  Similarity=0.559  Sum_probs=24.4

Q ss_pred             CceecCCCCccccCchHHHHHHHHhc
Q psy3483          70 RPYKCFYCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        70 ~~~~C~~c~~~f~~~~~l~~H~~~~~   95 (99)
                      +||+|.+||+.|...++|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999999986

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.30  E-value=5.9e-13  Score=57.22  Aligned_cols=39  Identities=15%  Similarity=0.523  Sum_probs=33.2

Q ss_pred             HHHHHHhhCCCCceecCC--CCccccCchHHHHHHHHhcCCC
Q psy3483          59 MRSHIRTHTKDRPYKCFY--CDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        59 ~~~h~~~~~~~~~~~C~~--c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      +..|+ .|++++||.|..  |++.|...++|..|+++|+|||
T Consensus         7 l~~h~-~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           7 IDKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSC-EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hcchh-hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            34455 489999999976  9999999999999999999986

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.1e-12  Score=53.98  Aligned_cols=35  Identities=31%  Similarity=0.472  Sum_probs=27.9

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTKD   69 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~   69 (99)
                      +..|++++||.|++||+.|... +.|..|+++|+||
T Consensus         4 ~~~Ht~ekpy~C~~CgK~F~~~-s~L~~H~r~HtGE   38 (38)
T d2cota2           4 EWQQRERRRYKCDECGKSFSHS-SDLSKHRRTHTGE   38 (38)
T ss_dssp             CSCCCCSCSSBCSSSCCBCSCH-HHHHHHHTTTCCS
T ss_pred             CcccCCCCCEecCCCCceeeCH-HHHHHhCccCCCC
Confidence            6778888888888888876666 8888888888875

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2e-13  Score=55.59  Aligned_cols=26  Identities=19%  Similarity=0.321  Sum_probs=15.1

Q ss_pred             CCCCCceeeCccccccccccchhhhcc
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNH   27 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h   27 (99)
                      +|+||+||.|.+|++.|.... .|..|
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~-~L~~H   27 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQ-LLDMH   27 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHH-HHHHH
T ss_pred             CCCCCCCEECCCCCCCcCCHh-HHHHh
Confidence            455566666666666655555 55555

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.2e-12  Score=49.63  Aligned_cols=28  Identities=25%  Similarity=0.553  Sum_probs=26.3

Q ss_pred             CceecCC--CCccccCchHHHHHHHHhcCC
Q psy3483          70 RPYKCFY--CDYRSNERSNVKAHMIRRHSV   97 (99)
Q Consensus        70 ~~~~C~~--c~~~f~~~~~l~~H~~~~~~~   97 (99)
                      +||.|..  |++.|...++|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            6899988  999999999999999999997

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.9e-12  Score=49.46  Aligned_cols=28  Identities=21%  Similarity=0.562  Sum_probs=26.2

Q ss_pred             CceecCC--CCccccCchHHHHHHHHhcCC
Q psy3483          70 RPYKCFY--CDYRSNERSNVKAHMIRRHSV   97 (99)
Q Consensus        70 ~~~~C~~--c~~~f~~~~~l~~H~~~~~~~   97 (99)
                      +||.|..  |++.|...++|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6899977  999999999999999999997

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=6.9e-13  Score=53.42  Aligned_cols=25  Identities=20%  Similarity=0.333  Sum_probs=16.5

Q ss_pred             CCCCceeeCccccccccccchhhhcc
Q psy3483           2 KSTELIVTCMYCSKILTYETETIMNH   27 (99)
Q Consensus         2 h~~~~~~~c~~c~~~f~~~~~~~~~h   27 (99)
                      |+||+||.|.+|++.|..+. .|..|
T Consensus         2 ~TGekPy~C~~C~k~F~~~~-~L~~H   26 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKA-NCARH   26 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHH-HHHHH
T ss_pred             CCCCccccCCCCCCcccChH-HHHHH
Confidence            56666666666666666666 66666

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.3e-12  Score=50.08  Aligned_cols=29  Identities=28%  Similarity=0.613  Sum_probs=26.7

Q ss_pred             CceecC--CCCccccCchHHHHHHHHhcCCC
Q psy3483          70 RPYKCF--YCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        70 ~~~~C~--~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      +||.|+  .|++.|...++|..|+++|+|||
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            589995  59999999999999999999986

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.2e-12  Score=53.22  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=16.2

Q ss_pred             CCCCCceeeCccccccccccchhhhcc
Q psy3483           1 MKSTELIVTCMYCSKILTYETETIMNH   27 (99)
Q Consensus         1 ~h~~~~~~~c~~c~~~f~~~~~~~~~h   27 (99)
                      +|+||+||.|++|++.|.... .|..|
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~-~L~~H   27 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSG-TMKMH   27 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHH-HHHHH
T ss_pred             ccCCCCCEeCCCCcccccchH-HHHHH
Confidence            466666666666666666665 55555

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=3.1e-11  Score=49.24  Aligned_cols=34  Identities=15%  Similarity=0.284  Sum_probs=26.3

Q ss_pred             CCCCCCCcceeccCCCcccccChhHHHHHHHhhCC
Q psy3483          34 VSRPTKYQRYVCCLCSKYRHSDASKMRSHIRTHTK   68 (99)
Q Consensus        34 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~   68 (99)
                      .+.|++++||.|.+|++.|... +.|..|+++|.+
T Consensus         3 ~R~HTgeKPy~C~~C~k~F~~~-~~L~~H~r~H~~   36 (37)
T d1p7aa_           3 TRGSTGIKPFQCPDCDRSFSRS-DHLALHRKRHML   36 (37)
T ss_dssp             SSTTCCSSSBCCTTTCCCBSSH-HHHHHHHGGGTC
T ss_pred             CCccCCccCeEeCCCCCEecCH-HHHHHHHhcCcC
Confidence            6778888888888888876666 788888877754

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.05  E-value=1.3e-11  Score=47.67  Aligned_cols=27  Identities=26%  Similarity=0.721  Sum_probs=14.1

Q ss_pred             ceeccCCCcccccChhHHHHHHHhhCCC
Q psy3483          42 RYVCCLCSKYRHSDASKMRSHIRTHTKD   69 (99)
Q Consensus        42 ~~~c~~c~~~~~~~~~~~~~h~~~~~~~   69 (99)
                      ||.|++|++.|... +.|..|+++|+|+
T Consensus         2 p~~C~~C~k~F~~~-~~L~~H~r~HTgE   28 (29)
T d2adra1           2 SFVCEVCTRAFARQ-EHLKRHYRSHTNE   28 (29)
T ss_dssp             CBCCTTTCCCBSCH-HHHHHHHHTTTSS
T ss_pred             cCCCCCCCCCCCCc-hHcccccCcccCC
Confidence            45555555544444 5555555555554

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=6.6e-11  Score=45.46  Aligned_cols=27  Identities=30%  Similarity=0.651  Sum_probs=25.2

Q ss_pred             CceecCC--CCccccCchHHHHHHHHhcC
Q psy3483          70 RPYKCFY--CDYRSNERSNVKAHMIRRHS   96 (99)
Q Consensus        70 ~~~~C~~--c~~~f~~~~~l~~H~~~~~~   96 (99)
                      +||.|..  |++.|...++|..|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6899977  99999999999999999987

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.2e-10  Score=44.76  Aligned_cols=29  Identities=24%  Similarity=0.611  Sum_probs=21.1

Q ss_pred             cceeccCCCcccccChhHHHHHHHhhCCCC
Q psy3483          41 QRYVCCLCSKYRHSDASKMRSHIRTHTKDR   70 (99)
Q Consensus        41 ~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~   70 (99)
                      +||.|++|++.|... +.|..|+++|++++
T Consensus         1 Kpy~C~~C~k~F~~~-s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRS-DHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCS-HHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecch-HHhhhhcCccCCcC
Confidence            467777777776666 77777777777764

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.01  E-value=2e-10  Score=45.05  Aligned_cols=29  Identities=28%  Similarity=0.490  Sum_probs=26.3

Q ss_pred             CCceecCC--CCccccCchHHHHHHHHhcCC
Q psy3483          69 DRPYKCFY--CDYRSNERSNVKAHMIRRHSV   97 (99)
Q Consensus        69 ~~~~~C~~--c~~~f~~~~~l~~H~~~~~~~   97 (99)
                      ++||.|..  |++.|...++|.+|+++|+.+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            68999987  999999999999999999864

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.5e-10  Score=46.77  Aligned_cols=27  Identities=26%  Similarity=0.624  Sum_probs=15.7

Q ss_pred             CCcccccChhHHHHHHHhhCCCCceecC
Q psy3483          48 CSKYRHSDASKMRSHIRTHTKDRPYKCF   75 (99)
Q Consensus        48 c~~~~~~~~~~~~~h~~~~~~~~~~~C~   75 (99)
                      |++.|... ..|..|+++|++++||.|.
T Consensus         9 C~k~F~~~-~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           9 CGKSFNFK-KHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             TCCEESSH-HHHHHHHHHHHTSCCCSCC
T ss_pred             CCCeeCCh-hHhccccCeeCCCCCEeCC
Confidence            56555444 5666666666666666553

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=1.3e-10  Score=44.29  Aligned_cols=27  Identities=30%  Similarity=0.672  Sum_probs=15.2

Q ss_pred             cceeccCCCcccccChhHHHHHHHhhCC
Q psy3483          41 QRYVCCLCSKYRHSDASKMRSHIRTHTK   68 (99)
Q Consensus        41 ~~~~c~~c~~~~~~~~~~~~~h~~~~~~   68 (99)
                      +||.|.+|++.|... +.|..|+++|+|
T Consensus         2 KPy~C~~C~k~F~~~-~~L~~H~r~HTG   28 (28)
T d1a1ia2           2 KPFQCRICMRNFSRS-DHLTTHIRTHTG   28 (28)
T ss_dssp             CCEECTTTCCEESCH-HHHHHHHHHHHC
T ss_pred             cCccCCCCcCEeccc-ccccccCCCccC
Confidence            455666666654444 556666665554

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=2.1e-10  Score=49.05  Aligned_cols=34  Identities=32%  Similarity=0.623  Sum_probs=30.3

Q ss_pred             CCCCCcceeccC--CCcccccChhHHHHHHHhhCCCC
Q psy3483          36 RPTKYQRYVCCL--CSKYRHSDASKMRSHIRTHTKDR   70 (99)
Q Consensus        36 ~~~~~~~~~c~~--c~~~~~~~~~~~~~h~~~~~~~~   70 (99)
                      .|++++||.|..  |++.|... +.|..|+++|+|++
T Consensus        12 ~h~gekpy~C~~~~C~k~F~~~-~~L~~H~r~Htgek   47 (47)
T d1ncsa_          12 KEMPDKTFECLFPGCTKTFKRR-YNIRSHIQTHLEDR   47 (47)
T ss_dssp             EEETTTEEECCCTTCCCEECSS-SSHHHHHHHHTTTC
T ss_pred             hccCCCCeECCcCCCCccccCc-hHHHhhcccccCCC
Confidence            489999999977  99988887 99999999999985

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.8e-10  Score=45.92  Aligned_cols=28  Identities=21%  Similarity=0.412  Sum_probs=23.2

Q ss_pred             eecCC--CCccccCchHHHHHHHHhcCCCC
Q psy3483          72 YKCFY--CDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        72 ~~C~~--c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      |.|..  |++.|....+|..|+++|+|++|
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekp   31 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRD   31 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCC
Confidence            66765  88888888888888888888887

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3.8e-10  Score=42.84  Aligned_cols=26  Identities=31%  Similarity=0.848  Sum_probs=23.9

Q ss_pred             CceecCC--CCccccCchHHHHHHHHhc
Q psy3483          70 RPYKCFY--CDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        70 ~~~~C~~--c~~~f~~~~~l~~H~~~~~   95 (99)
                      +||.|..  |++.|...++|..|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5899987  9999999999999999986

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=6.4e-10  Score=41.39  Aligned_cols=26  Identities=35%  Similarity=0.576  Sum_probs=16.2

Q ss_pred             cceeccCCCcccccChhHHHHHHHhhC
Q psy3483          41 QRYVCCLCSKYRHSDASKMRSHIRTHT   67 (99)
Q Consensus        41 ~~~~c~~c~~~~~~~~~~~~~h~~~~~   67 (99)
                      +||+|.+||+.|... +.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~-s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQN-SGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSH-HHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccC-cccccCccCCC
Confidence            456666666655554 66666666653

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.1e-09  Score=38.33  Aligned_cols=26  Identities=27%  Similarity=0.474  Sum_probs=22.3

Q ss_pred             ceecCCCCccccCchHHHHHHHHhcC
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMIRRHS   96 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~~~~~   96 (99)
                      |.+|..|++.|+.+..|..|++.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            56788899999999999999988876

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=8.4e-09  Score=37.64  Aligned_cols=29  Identities=31%  Similarity=0.708  Sum_probs=25.2

Q ss_pred             CCceecCCCCccccCchHHHHHHHHhcCC
Q psy3483          69 DRPYKCFYCDYRSNERSNVKAHMIRRHSV   97 (99)
Q Consensus        69 ~~~~~C~~c~~~f~~~~~l~~H~~~~~~~   97 (99)
                      ++||+|..|.....+++.|..|++.|+|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            57899999988888889999999999885

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.5e-08  Score=36.80  Aligned_cols=27  Identities=22%  Similarity=0.250  Sum_probs=22.9

Q ss_pred             ceecCCCCccccCchHHHHHHHHhcCC
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMIRRHSV   97 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~~~~~~   97 (99)
                      ...|.+||++|..++.|.+|.-.|+||
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            357888999999999999998888876

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.6e-08  Score=38.96  Aligned_cols=27  Identities=26%  Similarity=0.589  Sum_probs=16.0

Q ss_pred             ceeccC--CCcccccChhHHHHHHHhhCCC
Q psy3483          42 RYVCCL--CSKYRHSDASKMRSHIRTHTKD   69 (99)
Q Consensus        42 ~~~c~~--c~~~~~~~~~~~~~h~~~~~~~   69 (99)
                      ||.|+.  |++.|... +.|..|+++|+||
T Consensus         2 p~~C~~~gCgk~F~~~-~~L~~H~r~HtGE   30 (30)
T d2glia3           2 PHKCTFEGCRKSYSRL-ENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCSTTCCCCCSSH-HHHHHHHHHTTTC
T ss_pred             CeeCCCCCCCceECCh-hHhhhhcCcCcCC
Confidence            555655  66655544 6666666666654

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.8e-08  Score=38.40  Aligned_cols=29  Identities=17%  Similarity=0.331  Sum_probs=15.7

Q ss_pred             ceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      ...|..||+.|.....|.+|...|+||||
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekp   33 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKP   33 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCC
Confidence            34455555555555555555555555554

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=2.7e-08  Score=36.52  Aligned_cols=27  Identities=19%  Similarity=0.436  Sum_probs=24.0

Q ss_pred             CCceecCCCCccccCchHHHHHHHHhc
Q psy3483          69 DRPYKCFYCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        69 ~~~~~C~~c~~~f~~~~~l~~H~~~~~   95 (99)
                      ++||.|..||+.|..+....+|.+.|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            589999999999999999999988874

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=6.1e-09  Score=40.49  Aligned_cols=20  Identities=30%  Similarity=0.640  Sum_probs=10.3

Q ss_pred             eeeC--ccccccccccchhhhcc
Q psy3483           7 IVTC--MYCSKILTYETETIMNH   27 (99)
Q Consensus         7 ~~~c--~~c~~~f~~~~~~~~~h   27 (99)
                      ||.|  +.|++.|...+ .|..|
T Consensus         2 pf~C~~~~C~k~F~~~~-~L~~H   23 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSD-ELQRH   23 (31)
T ss_dssp             CCBCCSTTCCCBCSSHH-HHHHH
T ss_pred             cCCCcCCCCCcCcCChh-Hhhhh
Confidence            4555  23555555555 55555

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.7e-08  Score=38.89  Aligned_cols=28  Identities=36%  Similarity=0.738  Sum_probs=18.2

Q ss_pred             cceeccC--CCcccccChhHHHHHHHhhCCC
Q psy3483          41 QRYVCCL--CSKYRHSDASKMRSHIRTHTKD   69 (99)
Q Consensus        41 ~~~~c~~--c~~~~~~~~~~~~~h~~~~~~~   69 (99)
                      +||.|+.  |++.|... +.|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~-~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLD-FNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCH-HHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcH-HHcCccccccCCC
Confidence            3566755  77765555 7777777777664

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.45  E-value=1.5e-08  Score=39.55  Aligned_cols=22  Identities=18%  Similarity=0.477  Sum_probs=11.4

Q ss_pred             CceeeCcc--ccccccccchhhhcc
Q psy3483           5 ELIVTCMY--CSKILTYETETIMNH   27 (99)
Q Consensus         5 ~~~~~c~~--c~~~f~~~~~~~~~h   27 (99)
                      |+||.|.+  |++.|...+ .|..|
T Consensus         1 ErP~~C~~pgC~k~F~r~~-~L~~H   24 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNH-DLIRH   24 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSH-HHHHH
T ss_pred             CcCeECcCCCCCCeeCCHH-HHHHH
Confidence            34555543  555555555 55555

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2.3e-07  Score=33.91  Aligned_cols=27  Identities=30%  Similarity=0.566  Sum_probs=23.4

Q ss_pred             eecCCCCccccCchHHHHHHHHhcCCC
Q psy3483          72 YKCFYCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        72 ~~C~~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      |.|..|+......+.|..|.++|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            778889988888889999999998874

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2.2e-07  Score=34.52  Aligned_cols=28  Identities=21%  Similarity=0.615  Sum_probs=22.0

Q ss_pred             CCceecCCCCccccCchHHHHHHHHhcC
Q psy3483          69 DRPYKCFYCDYRSNERSNVKAHMIRRHS   96 (99)
Q Consensus        69 ~~~~~C~~c~~~f~~~~~l~~H~~~~~~   96 (99)
                      ++||.|+.|...|..+.-+.-|.+.|-|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCcccchHHHHhhccccceEeeecccC
Confidence            4678888888888888888888887765

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.5e-07  Score=35.74  Aligned_cols=30  Identities=23%  Similarity=0.576  Sum_probs=23.0

Q ss_pred             eeccCCCcccccChhHHHHHHHhhCCCCcee
Q psy3483          43 YVCCLCSKYRHSDASKMRSHIRTHTKDRPYK   73 (99)
Q Consensus        43 ~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~   73 (99)
                      ..|.+||+.|... ..|..|..+|++++||.
T Consensus         6 ~~ce~cgk~frdv-yhlnrhklshs~ekpys   35 (35)
T d2epra1           6 VACEICGKIFRDV-YHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             EEETTTTEEESSH-HHHHHHGGGSCSCCCCC
T ss_pred             hhHHHHHHHHHHH-HHHHhhhcccCCCCCCC
Confidence            5688888866655 77888888888888873

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.7e-08  Score=37.62  Aligned_cols=22  Identities=18%  Similarity=0.330  Sum_probs=14.0

Q ss_pred             CceeeCccccccccccchhhhcc
Q psy3483           5 ELIVTCMYCSKILTYETETIMNH   27 (99)
Q Consensus         5 ~~~~~c~~c~~~f~~~~~~~~~h   27 (99)
                      |+||.|+.|++.|+.+. .+..|
T Consensus         1 ekp~~cpic~qrfkrkd-rmsyh   22 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKD-RMSYH   22 (32)
T ss_dssp             CCSSEETTTTEECSCHH-HHHHH
T ss_pred             CCCcccchHHHHhhccc-cceEe
Confidence            45666666666666665 55555

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=1.7e-07  Score=35.65  Aligned_cols=25  Identities=32%  Similarity=0.715  Sum_probs=12.4

Q ss_pred             ceeccC--CCcccccChhHHHHHHHhhC
Q psy3483          42 RYVCCL--CSKYRHSDASKMRSHIRTHT   67 (99)
Q Consensus        42 ~~~c~~--c~~~~~~~~~~~~~h~~~~~   67 (99)
                      ||.|..  |++.|... +.|..|+++|+
T Consensus         2 p~~C~~~gC~k~F~~~-~~L~~H~r~Ht   28 (29)
T d1a1ia1           2 PYACPVESCDRRFSRS-ADLTRHIRIHT   28 (29)
T ss_dssp             CEECCSTTCCCEESSH-HHHHHHTHHHH
T ss_pred             CeECCCCCCCcEECch-hHhhhhcCccC
Confidence            445544  55544444 55555555554

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.20  E-value=1.1e-06  Score=31.26  Aligned_cols=26  Identities=19%  Similarity=0.316  Sum_probs=20.7

Q ss_pred             ecCCCCccccCchHHHHHHHHhcCCC
Q psy3483          73 KCFYCDYRSNERSNVKAHMIRRHSVK   98 (99)
Q Consensus        73 ~C~~c~~~f~~~~~l~~H~~~~~~~k   98 (99)
                      +|+.|.+.|..+..|..|-+.|+||+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            57778888888888888888888875

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.5e-07  Score=33.41  Aligned_cols=23  Identities=35%  Similarity=0.754  Sum_probs=10.6

Q ss_pred             eccCCCcccccChhHHHHHHHhhC
Q psy3483          44 VCCLCSKYRHSDASKMRSHIRTHT   67 (99)
Q Consensus        44 ~c~~c~~~~~~~~~~~~~h~~~~~   67 (99)
                      .|++|++.|... ..|.-|++.|+
T Consensus         3 kc~~c~kcfsrk-dklk~hmr~ht   25 (26)
T d2dmda2           3 KCEVCGKCFSRK-DKLKTHMRCHT   25 (26)
T ss_dssp             CBTTTTBCCCCH-HHHHHHGGGCC
T ss_pred             ccchhhhHhcch-hHHHHHhhccC
Confidence            444455444433 44444444444

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=7.4e-07  Score=33.50  Aligned_cols=24  Identities=42%  Similarity=0.794  Sum_probs=11.7

Q ss_pred             ceeccC--CCcccccChhHHHHHHHhh
Q psy3483          42 RYVCCL--CSKYRHSDASKMRSHIRTH   66 (99)
Q Consensus        42 ~~~c~~--c~~~~~~~~~~~~~h~~~~   66 (99)
                      ||.|+.  |++.|... +.|..|+++|
T Consensus         2 Pf~C~~~gC~K~F~~~-~~L~~H~r~H   27 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQS-TNLKSHILTH   27 (28)
T ss_dssp             CCCCCSTTCCCCCSST-TTTHHHHHHH
T ss_pred             CcCCCCCCcCCcCCCH-HHHHHHHhhc
Confidence            344444  55544444 5555555544

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=98.04  E-value=3.6e-06  Score=30.72  Aligned_cols=28  Identities=14%  Similarity=0.422  Sum_probs=24.7

Q ss_pred             CceecCC--CCccccCchHHHHHHHHhcCC
Q psy3483          70 RPYKCFY--CDYRSNERSNVKAHMIRRHSV   97 (99)
Q Consensus        70 ~~~~C~~--c~~~f~~~~~l~~H~~~~~~~   97 (99)
                      +||.|..  |.+.|.....|.+|..+|+||
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            5788865  999999999999999999986

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=98.02  E-value=1.7e-06  Score=30.34  Aligned_cols=24  Identities=29%  Similarity=0.498  Sum_probs=20.7

Q ss_pred             eecCCCCccccCchHHHHHHHHhc
Q psy3483          72 YKCFYCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        72 ~~C~~c~~~f~~~~~l~~H~~~~~   95 (99)
                      |+|..|.++|..++.|.+|++.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            678889999999999999988773

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=98.01  E-value=3.8e-06  Score=30.55  Aligned_cols=26  Identities=35%  Similarity=0.510  Sum_probs=22.8

Q ss_pred             CceecCC--CCccccCchHHHHHHHHhc
Q psy3483          70 RPYKCFY--CDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        70 ~~~~C~~--c~~~f~~~~~l~~H~~~~~   95 (99)
                      .||.|+.  |++.|...+-|.+|.++|.
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvha   29 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVHA   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhccC
Confidence            5899986  9999999999999998873

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=2.8e-06  Score=31.05  Aligned_cols=17  Identities=18%  Similarity=0.411  Sum_probs=8.6

Q ss_pred             CceeeCccccccccccc
Q psy3483           5 ELIVTCMYCSKILTYET   21 (99)
Q Consensus         5 ~~~~~c~~c~~~f~~~~   21 (99)
                      |+||.|..||+.|....
T Consensus         1 EkPf~C~~CgrkFArsd   17 (28)
T d1a1ia3           1 EKPFACDICGRKFARSD   17 (28)
T ss_dssp             CCCEECTTTCCEESSHH
T ss_pred             CCCcccchhhhhhhcch
Confidence            34555555555555444

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=2.3e-06  Score=31.03  Aligned_cols=29  Identities=28%  Similarity=0.633  Sum_probs=19.1

Q ss_pred             CcceeccCCCcccccChhHHHHHHHhhCCC
Q psy3483          40 YQRYVCCLCSKYRHSDASKMRSHIRTHTKD   69 (99)
Q Consensus        40 ~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~   69 (99)
                      ++||+|..|......+ +.+..|.+.|+|+
T Consensus         1 erpfkcqlcsy~srns-sqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNS-SQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSH-HHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCc-hheEEeeecccCc
Confidence            3567777777654444 6777777777663

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=3e-06  Score=31.66  Aligned_cols=28  Identities=21%  Similarity=0.396  Sum_probs=23.1

Q ss_pred             CceecCC--CCccccCchHHHHHH-HHhcCC
Q psy3483          70 RPYKCFY--CDYRSNERSNVKAHM-IRRHSV   97 (99)
Q Consensus        70 ~~~~C~~--c~~~f~~~~~l~~H~-~~~~~~   97 (99)
                      +||.|..  |.+.|++.++...|+ |+|..|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccCC
Confidence            5888876  999999999998996 887653

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=3.2e-06  Score=30.49  Aligned_cols=26  Identities=35%  Similarity=0.533  Sum_probs=17.1

Q ss_pred             eeccCCCcccccChhHHHHHHHhhCCC
Q psy3483          43 YVCCLCSKYRHSDASKMRSHIRTHTKD   69 (99)
Q Consensus        43 ~~c~~c~~~~~~~~~~~~~h~~~~~~~   69 (99)
                      +.|.+||+.|..+ +.|..|+.+|+++
T Consensus         3 hvc~ecgkaf~es-sklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVES-SKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSH-HHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHH-HHHHHHhhcccCC
Confidence            3577777765555 6777777777664

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=7.9e-06  Score=29.35  Aligned_cols=27  Identities=33%  Similarity=0.754  Sum_probs=23.2

Q ss_pred             CCceecCCCCccccCchHHHHHHHHhc
Q psy3483          69 DRPYKCFYCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        69 ~~~~~C~~c~~~f~~~~~l~~H~~~~~   95 (99)
                      .+||+|..|+..-...+.|..|++.|.
T Consensus         1 vkp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           1 VKPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCCcccccccchhcchhhHhhhhhccc
Confidence            368999999998888999999998875

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=6.6e-06  Score=30.44  Aligned_cols=27  Identities=30%  Similarity=0.691  Sum_probs=22.3

Q ss_pred             CceecCC--CCccccCchHHHHHHHHhcC
Q psy3483          70 RPYKCFY--CDYRSNERSNVKAHMIRRHS   96 (99)
Q Consensus        70 ~~~~C~~--c~~~f~~~~~l~~H~~~~~~   96 (99)
                      +||.|..  |++.+...++|..|+++++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5788876  88999999999999887665

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.3e-05  Score=32.01  Aligned_cols=27  Identities=30%  Similarity=0.521  Sum_probs=22.0

Q ss_pred             CCCCceecCCCCccccCchHHHHHHHH
Q psy3483          67 TKDRPYKCFYCDYRSNERSNVKAHMIR   93 (99)
Q Consensus        67 ~~~~~~~C~~c~~~f~~~~~l~~H~~~   93 (99)
                      +|-+||.|..|++.|.-+.++.+|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            467889999999999888888888653

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.4e-05  Score=29.18  Aligned_cols=28  Identities=39%  Similarity=0.897  Sum_probs=24.4

Q ss_pred             CceecCCCCccccCchHHHHHHHHhcCC
Q psy3483          70 RPYKCFYCDYRSNERSNVKAHMIRRHSV   97 (99)
Q Consensus        70 ~~~~C~~c~~~f~~~~~l~~H~~~~~~~   97 (99)
                      +||+|..|.....+.++|..|++.-+|+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            5899999999999999999998876654

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.74  E-value=1.4e-05  Score=29.81  Aligned_cols=25  Identities=28%  Similarity=0.554  Sum_probs=20.8

Q ss_pred             ceecCCCCccccCchHHHHHHHHhc
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~~~~   95 (99)
                      ||.|..|++.|..+..+.+|....+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH   25 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIH   25 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTS
T ss_pred             CcccccccchhhHHHHHHHHHHHHh
Confidence            7899999999999999999966443

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.73  E-value=3.7e-05  Score=27.88  Aligned_cols=29  Identities=17%  Similarity=0.485  Sum_probs=22.5

Q ss_pred             CCceecCCCCccccCchHHHHHHHHhcCC
Q psy3483          69 DRPYKCFYCDYRSNERSNVKAHMIRRHSV   97 (99)
Q Consensus        69 ~~~~~C~~c~~~f~~~~~l~~H~~~~~~~   97 (99)
                      +..|-|..|...|..+-.|..|+-.|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            45677888888888888888888888775

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.72  E-value=2.3e-05  Score=30.99  Aligned_cols=27  Identities=22%  Similarity=0.520  Sum_probs=15.7

Q ss_pred             CceecCCCCccccCchHHHHHHHHhcC
Q psy3483          70 RPYKCFYCDYRSNERSNVKAHMIRRHS   96 (99)
Q Consensus        70 ~~~~C~~c~~~f~~~~~l~~H~~~~~~   96 (99)
                      +.|.|..|++.|.....|--|++.|..
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~   30 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRR   30 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCC
T ss_pred             CccCCCCCCCccCCcccccchHhhhcc
Confidence            345666666666666666666655543

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=2.2e-05  Score=27.82  Aligned_cols=26  Identities=31%  Similarity=0.469  Sum_probs=21.3

Q ss_pred             eccCCCcccccChhHHHHHHHhhCCCC
Q psy3483          44 VCCLCSKYRHSDASKMRSHIRTHTKDR   70 (99)
Q Consensus        44 ~c~~c~~~~~~~~~~~~~h~~~~~~~~   70 (99)
                      +|++|.+.|.+. .-+..|.+.|+|++
T Consensus         2 qcp~c~k~f~sk-yylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSK-YYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSH-HHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHh-HhhhhccccccCCC
Confidence            588888888877 77888888888874

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=4.9e-05  Score=27.72  Aligned_cols=27  Identities=44%  Similarity=1.059  Sum_probs=22.7

Q ss_pred             CceecCCCCccccCchHHHHHHHHhcC
Q psy3483          70 RPYKCFYCDYRSNERSNVKAHMIRRHS   96 (99)
Q Consensus        70 ~~~~C~~c~~~f~~~~~l~~H~~~~~~   96 (99)
                      +||.|..|.......++|..|.++-++
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            588999999888899999999887654

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=8.4e-06  Score=32.55  Aligned_cols=28  Identities=18%  Similarity=0.430  Sum_probs=18.5

Q ss_pred             CCCceeeCccccccccccchhhhccchhh
Q psy3483           3 STELIVTCMYCSKILTYETETIMNHCKFC   31 (99)
Q Consensus         3 ~~~~~~~c~~c~~~f~~~~~~~~~h~~~~   31 (99)
                      +|-+||.|..|++.|-... .+..|...|
T Consensus         1 TGiKPYeC~~C~KrFMWRD-SF~RH~~~C   28 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRD-SFHRHVTSC   28 (44)
T ss_dssp             CCCCCEECSSSCCEESCHH-HHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHH-HHHHhhhhh
Confidence            3567777777777777666 666664443

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=6.8e-05  Score=26.12  Aligned_cols=24  Identities=33%  Similarity=0.814  Sum_probs=20.5

Q ss_pred             CceecCCCCccccCchHHHHHHHH
Q psy3483          70 RPYKCFYCDYRSNERSNVKAHMIR   93 (99)
Q Consensus        70 ~~~~C~~c~~~f~~~~~l~~H~~~   93 (99)
                      .||+|..|...|.++.+|..|+..
T Consensus         1 mpykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           1 MPYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHh
Confidence            379999999999999999988753

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=7.4e-05  Score=29.34  Aligned_cols=28  Identities=21%  Similarity=0.538  Sum_probs=23.6

Q ss_pred             CCCceec--CCCCccccCchHHHHHHHHhc
Q psy3483          68 KDRPYKC--FYCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        68 ~~~~~~C--~~c~~~f~~~~~l~~H~~~~~   95 (99)
                      .++||.|  +-|+..|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            4789999  459999999999999988763

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=5.2e-05  Score=27.06  Aligned_cols=24  Identities=25%  Similarity=0.512  Sum_probs=16.5

Q ss_pred             ceecCCCCccccCchHHHHHHHHh
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMIRR   94 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~~~   94 (99)
                      ||+|..||+.+..+.+|..|....
T Consensus         1 pf~c~kcgkcyfrkenllehearn   24 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEARN   24 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHHC
T ss_pred             CCccccchhhhhhHhHHHHHHHHh
Confidence            567777777777777777776543

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=5.9e-05  Score=27.37  Aligned_cols=25  Identities=32%  Similarity=0.905  Sum_probs=21.8

Q ss_pred             ceecCCCCccccCchHHHHHHHHhc
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~~~~   95 (99)
                      ||.|..|...|..+.+|..|+..-+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKa   25 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKA   25 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSS
T ss_pred             CcccceeeeeEeeccchhHhhhhhh
Confidence            7899999999999999999987643

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=8e-05  Score=26.73  Aligned_cols=26  Identities=23%  Similarity=0.540  Sum_probs=21.0

Q ss_pred             ceecCCCCccccCchHHHHHHHHhcC
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMIRRHS   96 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~~~~~   96 (99)
                      |-+|.+|..+.+.+..|..|.+.|..
T Consensus         2 pekc~ecsyscsskaalrvh~rihc~   27 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHCT   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCC
T ss_pred             CccCcccccccCcHHHHHHhhccccC
Confidence            56788888888888888888888754

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.0001  Score=26.74  Aligned_cols=27  Identities=41%  Similarity=0.730  Sum_probs=18.4

Q ss_pred             eeccCCCcccccChhHHHHHHHhhCCCC
Q psy3483          43 YVCCLCSKYRHSDASKMRSHIRTHTKDR   70 (99)
Q Consensus        43 ~~c~~c~~~~~~~~~~~~~h~~~~~~~~   70 (99)
                      |.|+.||.. ...++.|..|+++|++++
T Consensus         2 YvC~~Cg~~-C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIR-AKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCB-CSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcc-cCCHHHHHHHHHHhcCCC
Confidence            567777764 334477888888887764

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.31  E-value=0.00014  Score=28.70  Aligned_cols=27  Identities=26%  Similarity=0.693  Sum_probs=17.2

Q ss_pred             ceeccCCCcccccChhHHHHHHHhhCCC
Q psy3483          42 RYVCCLCSKYRHSDASKMRSHIRTHTKD   69 (99)
Q Consensus        42 ~~~c~~c~~~~~~~~~~~~~h~~~~~~~   69 (99)
                      .|.|.+|++.|.+. ..|-.|+..|..+
T Consensus         5 ~~~C~~C~k~F~s~-qALGGH~~~Hr~~   31 (37)
T d1njqa_           5 SYTCSFCKREFRSA-QALGGHMNVHRRD   31 (37)
T ss_dssp             SEECTTTCCEESSH-HHHHHHHHTTCCS
T ss_pred             ccCCCCCCCccCCc-ccccchHhhhcch
Confidence            46677777765555 6677777666543

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00012  Score=28.07  Aligned_cols=24  Identities=17%  Similarity=0.061  Sum_probs=17.5

Q ss_pred             cCCCCccccCchHHHHHHHHhcCC
Q psy3483          74 CFYCDYRSNERSNVKAHMIRRHSV   97 (99)
Q Consensus        74 C~~c~~~f~~~~~l~~H~~~~~~~   97 (99)
                      |..=++.|.....|..|+|.||||
T Consensus        10 C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          10 CSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCCcchhHHHHHHHHhhcCCC
Confidence            333455678888888888888886

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.19  E-value=8.7e-05  Score=25.84  Aligned_cols=23  Identities=35%  Similarity=0.676  Sum_probs=15.6

Q ss_pred             eeccCCCcccccChhHHHHHHHhh
Q psy3483          43 YVCCLCSKYRHSDASKMRSHIRTH   66 (99)
Q Consensus        43 ~~c~~c~~~~~~~~~~~~~h~~~~   66 (99)
                      |.|..|.++|... +.+..|+++|
T Consensus         1 ykcglcersfvek-salsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEK-SALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSH-HHHHHHGGGT
T ss_pred             CcccchHHHHHHH-HHHHHHHHhh
Confidence            4577777766555 7777777765

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.14  E-value=0.00016  Score=25.75  Aligned_cols=24  Identities=17%  Similarity=0.378  Sum_probs=17.5

Q ss_pred             ceeccCCCcccccChhHHHHHHHhh
Q psy3483          42 RYVCCLCSKYRHSDASKMRSHIRTH   66 (99)
Q Consensus        42 ~~~c~~c~~~~~~~~~~~~~h~~~~   66 (99)
                      ||+|..||+.++.. .++..|...+
T Consensus         1 pf~c~kcgkcyfrk-enllehearn   24 (28)
T d2dlqa2           1 PFECPKCGKCYFRK-ENLLEHEARN   24 (28)
T ss_dssp             SCBCTTTCCBCSSH-HHHHHHHHHC
T ss_pred             CCccccchhhhhhH-hHHHHHHHHh
Confidence            46788888877776 7777776644

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.0003  Score=25.41  Aligned_cols=28  Identities=25%  Similarity=0.600  Sum_probs=15.8

Q ss_pred             cceeccCCCcccccChhHHHHHHHhhCCC
Q psy3483          41 QRYVCCLCSKYRHSDASKMRSHIRTHTKD   69 (99)
Q Consensus        41 ~~~~c~~c~~~~~~~~~~~~~h~~~~~~~   69 (99)
                      +-|.|.+|...|... -.+..|+.+|+|+
T Consensus         3 qvftcs~cqe~f~rr-melr~hmvshtge   30 (30)
T d2dlqa3           3 QVFTCSVCQETFRRR-MELRLHMVSHTGE   30 (30)
T ss_dssp             CCEECSSSCCEESSH-HHHHHHHHHHSSS
T ss_pred             ceEEeHHHHHHHHHH-HhheeeeecccCC
Confidence            345566666555544 5566666666553

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00054  Score=24.41  Aligned_cols=24  Identities=21%  Similarity=0.552  Sum_probs=21.0

Q ss_pred             ceecCCCCccccCchHHHHHHHHh
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMIRR   94 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~~~   94 (99)
                      .|+|+.|+-....+++|..|++..
T Consensus         2 k~qcphc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CccCCcchhheeehhhhhHHhhhc
Confidence            488999999999999999998754

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.80  E-value=0.00028  Score=26.17  Aligned_cols=20  Identities=20%  Similarity=0.536  Sum_probs=11.1

Q ss_pred             eeeCccccccccccchhhhcc
Q psy3483           7 IVTCMYCSKILTYETETIMNH   27 (99)
Q Consensus         7 ~~~c~~c~~~f~~~~~~~~~h   27 (99)
                      ||.|..|++.|..+. .+-.|
T Consensus         1 Pf~C~~C~R~FaRrD-LlLRH   20 (31)
T d2adra2           1 PYPCGLCNRAFTRRD-LLIRH   20 (31)
T ss_dssp             SEECTTTCCEESSHH-HHHHH
T ss_pred             CcccccccchhhHHH-HHHHH
Confidence            456666666666555 43333

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00031  Score=27.53  Aligned_cols=23  Identities=22%  Similarity=0.366  Sum_probs=16.6

Q ss_pred             CCceeeC--ccccccccccchhhhcc
Q psy3483           4 TELIVTC--MYCSKILTYETETIMNH   27 (99)
Q Consensus         4 ~~~~~~c--~~c~~~f~~~~~~~~~h   27 (99)
                      +++||.|  +.|++.|..+. .|.-|
T Consensus         3 ddkPF~C~~pGC~q~F~neD-hL~vH   27 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNED-HLAVH   27 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHH-HHHHH
T ss_pred             CCCceecCCCCccccccchH-HHHHh
Confidence            4678887  67888887776 66655

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0011  Score=27.24  Aligned_cols=25  Identities=12%  Similarity=0.266  Sum_probs=20.6

Q ss_pred             ceecCCCCccccCchHHHHHHHHhc
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~~~~   95 (99)
                      .|.|..|++.|.....|..|...|.
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            4778888899988888888888774

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0016  Score=24.60  Aligned_cols=26  Identities=15%  Similarity=0.304  Sum_probs=21.4

Q ss_pred             ceecCCCCccccCchHHHHHHHHhcC
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMIRRHS   96 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~~~~~   96 (99)
                      .|.|..|++.|..+..+.+|...-+|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            48899999999999999888765554

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.87  E-value=0.01  Score=24.22  Aligned_cols=28  Identities=25%  Similarity=0.517  Sum_probs=18.5

Q ss_pred             CCCceecCCCCccccCchHHHHHHHHhc
Q psy3483          68 KDRPYKCFYCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        68 ~~~~~~C~~c~~~f~~~~~l~~H~~~~~   95 (99)
                      ++.|..|+.|+-...++.+|.+|+..-+
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~h   48 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            4566777777777777777777765444

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.62  E-value=0.0078  Score=21.14  Aligned_cols=24  Identities=21%  Similarity=0.523  Sum_probs=19.3

Q ss_pred             eecC--CCCccccCchHHHHHHHHhc
Q psy3483          72 YKCF--YCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        72 ~~C~--~c~~~f~~~~~l~~H~~~~~   95 (99)
                      |.|.  .|++.|.....|..|+-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            4453  49999999999999988875

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.29  E-value=0.012  Score=20.29  Aligned_cols=22  Identities=27%  Similarity=0.570  Sum_probs=18.3

Q ss_pred             eecCCCCccccCchHHHHHHHH
Q psy3483          72 YKCFYCDYRSNERSNVKAHMIR   93 (99)
Q Consensus        72 ~~C~~c~~~f~~~~~l~~H~~~   93 (99)
                      |.|+.|-+-|..+.++..|.+.
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            6788888889988888888764

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.18  E-value=0.015  Score=21.23  Aligned_cols=28  Identities=21%  Similarity=0.539  Sum_probs=20.8

Q ss_pred             CceecCC--CCccccCchHHHHHHHHhcCC
Q psy3483          70 RPYKCFY--CDYRSNERSNVKAHMIRRHSV   97 (99)
Q Consensus        70 ~~~~C~~--c~~~f~~~~~l~~H~~~~~~~   97 (99)
                      +.|.|..  |+-.|.....|..|+-.|+||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            3466643  777788888888888888876

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.90  E-value=0.015  Score=22.18  Aligned_cols=29  Identities=28%  Similarity=0.214  Sum_probs=22.2

Q ss_pred             ceecCCCCccccCchHHHHHHHHhcCCCC
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMIRRHSVKP   99 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~~~~~~kp   99 (99)
                      .-.|..|+-.|.+.+.++.|...+...+|
T Consensus         8 ~rYC~~CDI~Fn~~~T~~aHKk~YCss~p   36 (36)
T d1fu9a_           8 KKYCSTCDISFNYVKTYLAHKQFYCKNKP   36 (36)
T ss_dssp             CSEETTTTEECSSHHHHHHHHHHTSCCCC
T ss_pred             hhHHhhCCceehhHHHHHHHHHhcccCCC
Confidence            34688888888888888888877665554

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.0049  Score=27.52  Aligned_cols=23  Identities=22%  Similarity=0.434  Sum_probs=18.2

Q ss_pred             ceecCCCCccccCchHHHHHHHH
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMIR   93 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~~   93 (99)
                      -|.|..|++.|.....|..|.++
T Consensus        15 qfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTC
T ss_pred             EEecccccCccCCHHHHHHHHcc
Confidence            37888888888888888888653

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.27  E-value=0.014  Score=21.74  Aligned_cols=24  Identities=21%  Similarity=0.412  Sum_probs=19.3

Q ss_pred             ceecCCCCccccCchHHHHHHHHh
Q psy3483          71 PYKCFYCDYRSNERSNVKAHMIRR   94 (99)
Q Consensus        71 ~~~C~~c~~~f~~~~~l~~H~~~~   94 (99)
                      .|.|.-||-.|+..+.|..|+.-+
T Consensus         8 rf~c~pcgirfss~stleahqtyy   31 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQAYY   31 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTTTT
T ss_pred             ceeccccceeecChhHHHhhhhee
Confidence            478888998899888888886543

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.10  E-value=0.0094  Score=26.13  Aligned_cols=36  Identities=14%  Similarity=0.504  Sum_probs=17.7

Q ss_pred             CCcceeccCCCcccccChhHHHHHHHhhCCCCceecCCCC
Q psy3483          39 KYQRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCD   78 (99)
Q Consensus        39 ~~~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~   78 (99)
                      ....|.|+.|++.|    +.|..-+......-.|.|..|+
T Consensus        11 ~~~~y~Cp~C~~~y----s~Lda~~L~d~~~~~F~C~~C~   46 (62)
T d1vd4a_          11 NRASFKCPVCSSTF----TDLEANQLFDPMTGTFRCTFCH   46 (62)
T ss_dssp             SSSEEECSSSCCEE----EHHHHHHHEETTTTEEBCSSSC
T ss_pred             cCCceECCCCCCCc----chhhHHHhcCcCCCeEEecCCC
Confidence            34456666666532    2233333344444456666664

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.30  E-value=0.043  Score=19.42  Aligned_cols=20  Identities=15%  Similarity=0.262  Sum_probs=16.4

Q ss_pred             CCCccccCchHHHHHHHHhc
Q psy3483          76 YCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        76 ~c~~~f~~~~~l~~H~~~~~   95 (99)
                      .|.+.|...+.+..|+.+|.
T Consensus         8 gC~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGGS
T ss_pred             cHHHHhhchHHHHHHhhccC
Confidence            38888998888888888774

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=92.93  E-value=0.03  Score=21.67  Aligned_cols=25  Identities=24%  Similarity=0.461  Sum_probs=16.2

Q ss_pred             cceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCc
Q psy3483          41 QRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDY   79 (99)
Q Consensus        41 ~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~   79 (99)
                      +.|.|.+||..              +.++.|-.|+.|+.
T Consensus         4 ~~~vC~vCGyi--------------~~g~~Pe~CPvCg~   28 (36)
T d1yuza2           4 KFHLCPICGYI--------------HKGEDFEKCPICFR   28 (36)
T ss_dssp             CEEECSSSCCE--------------EESSCCSBCTTTCC
T ss_pred             CEEECCCCCCE--------------eeCCCCCcCCCCCC
Confidence            45778888763              23455677888874

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.68  E-value=0.067  Score=19.01  Aligned_cols=19  Identities=16%  Similarity=0.083  Sum_probs=15.3

Q ss_pred             CCCCccccCchHHHHHHHH
Q psy3483          75 FYCDYRSNERSNVKAHMIR   93 (99)
Q Consensus        75 ~~c~~~f~~~~~l~~H~~~   93 (99)
                      +.|++.|+++..|.-|.+-
T Consensus         6 ~gc~kifsnrqylnhh~ky   24 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHH
T ss_pred             CCchhhhccHHHHHhHHHH
Confidence            4599999999988887664

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.51  E-value=0.044  Score=23.91  Aligned_cols=27  Identities=19%  Similarity=0.536  Sum_probs=20.1

Q ss_pred             CCceecCCCCccccCchHHHHHHHHhc
Q psy3483          69 DRPYKCFYCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        69 ~~~~~C~~c~~~f~~~~~l~~H~~~~~   95 (99)
                      ...|+|..|+..|.....|..|+-.|+
T Consensus        16 s~~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          16 NSTYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CceeeechhHHHHhhHHHHHHHHHhcc
Confidence            335788888887877778888877765

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.28  E-value=0.04  Score=21.45  Aligned_cols=25  Identities=24%  Similarity=0.668  Sum_probs=16.6

Q ss_pred             cceeccCCCcccccChhHHHHHHHhhCCCCceecCCCCc
Q psy3483          41 QRYVCCLCSKYRHSDASKMRSHIRTHTKDRPYKCFYCDY   79 (99)
Q Consensus        41 ~~~~c~~c~~~~~~~~~~~~~h~~~~~~~~~~~C~~c~~   79 (99)
                      +.|.|.+||..              +.++.|-.|+.|+.
T Consensus         4 ~~~~C~vCG~i--------------~~g~~P~~CPvCg~   28 (37)
T d1nnqa2           4 KVYICPICGYT--------------AVDEAPEYCPVCGA   28 (37)
T ss_dssp             CEEECTTTCCE--------------EESCCCSBCTTTCC
T ss_pred             cEEECCCCCCE--------------ecCCCCCcCCCCCC
Confidence            44778888863              23356778888874

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.17  E-value=0.085  Score=19.79  Aligned_cols=27  Identities=22%  Similarity=0.444  Sum_probs=21.2

Q ss_pred             CCCceecCCCCccccCchHHHHHHHHh
Q psy3483          68 KDRPYKCFYCDYRSNERSNVKAHMIRR   94 (99)
Q Consensus        68 ~~~~~~C~~c~~~f~~~~~l~~H~~~~   94 (99)
                      ++..|.|..|.+.+...+++.+|--+.
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtS   31 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTS   31 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHH
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhh
Confidence            455688999999999999998885543

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.66  E-value=0.21  Score=17.74  Aligned_cols=21  Identities=19%  Similarity=0.569  Sum_probs=11.5

Q ss_pred             eecCCCCccccCchHHHHHHH
Q psy3483          72 YKCFYCDYRSNERSNVKAHMI   92 (99)
Q Consensus        72 ~~C~~c~~~f~~~~~l~~H~~   92 (99)
                      |-|..|++......-+.-|.-
T Consensus         3 ftc~hcgkqlks~~gmkyhvm   23 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVM   23 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHH
T ss_pred             eechhHHHHHhhccCceEEEe
Confidence            455556665555555555543

>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CHY zinc finger-like
superfamily: CHY zinc finger-like
family: CHY zinc finger
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.40  E-value=0.37  Score=21.50  Aligned_cols=38  Identities=24%  Similarity=0.386  Sum_probs=20.3

Q ss_pred             eeCccccccccccc--hhhhccchhhccCCCCCCCcceeccCCCcc
Q psy3483           8 VTCMYCSKILTYET--ETIMNHCKFCKAVSRPTKYQRYVCCLCSKY   51 (99)
Q Consensus         8 ~~c~~c~~~f~~~~--~~~~~h~~~~~~~~~~~~~~~~~c~~c~~~   51 (99)
                      ..|..||+.+....  ..+..|      .......+.+.|-.||..
T Consensus        21 l~C~~Cg~~~~C~~C~~~lt~H------~~~~k~~~~l~CH~Cg~~   60 (74)
T d2dkta1          21 LKAPCCDKLYTCRLCHDTNEDH------QLDRFKVKEVQCINCEKL   60 (74)
T ss_dssp             EEETTTTEEESSHHHHHHTSSS------CCCSSSCCCEEESSSCCE
T ss_pred             EEcCcCcCeeeCCCCCCccccc------ccccccCCEEEeccCCCc
Confidence            45777887765442  133333      211123455778888863

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=86.61  E-value=0.37  Score=17.04  Aligned_cols=23  Identities=35%  Similarity=0.686  Sum_probs=17.6

Q ss_pred             ceecC--CCCccccCchHHHHHHHH
Q psy3483          71 PYKCF--YCDYRSNERSNVKAHMIR   93 (99)
Q Consensus        71 ~~~C~--~c~~~f~~~~~l~~H~~~   93 (99)
                      .|.|.  .|+..|..+.++..|-..
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnr   26 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNR   26 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHH
T ss_pred             CccccCCCcceEEeehHHHHHHHhh
Confidence            46675  499999999999888543

>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Zinc finger FYVE domain containing protein 19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.14  E-value=0.76  Score=21.20  Aligned_cols=10  Identities=30%  Similarity=0.647  Sum_probs=5.7

Q ss_pred             eeccCCCccc
Q psy3483          43 YVCCLCSKYR   52 (99)
Q Consensus        43 ~~c~~c~~~~   52 (99)
                      +.|..||..|
T Consensus        26 hhCr~CG~vf   35 (88)
T d1wfka_          26 YGCKNCGRAF   35 (88)
T ss_dssp             EECSSSCCEE
T ss_pred             ccccccChhh
Confidence            4566666544

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.65  E-value=0.91  Score=16.90  Aligned_cols=23  Identities=26%  Similarity=0.532  Sum_probs=15.9

Q ss_pred             CceecCCCCccccCchHHHHHHH
Q psy3483          70 RPYKCFYCDYRSNERSNVKAHMI   92 (99)
Q Consensus        70 ~~~~C~~c~~~f~~~~~l~~H~~   92 (99)
                      +-|.|..|.+-......+.+|+.
T Consensus         6 kLyiCEfCLKYmks~~~l~RH~~   28 (33)
T d1m36a_           6 KLYLCEFCLKYMKSRTILQQHMK   28 (33)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHH
T ss_pred             eeeeehhhhhhhCCHHHHHHHHH
Confidence            45777777777777777777764

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=80.52  E-value=0.61  Score=17.89  Aligned_cols=11  Identities=0%  Similarity=-0.121  Sum_probs=6.9

Q ss_pred             eeCcccccccc
Q psy3483           8 VTCMYCSKILT   18 (99)
Q Consensus         8 ~~c~~c~~~f~   18 (99)
                      +.|+.||..|-
T Consensus         3 ~vc~~cG~~Yh   13 (37)
T d2ak3a2           3 WIHPGSGRVYN   13 (37)
T ss_dssp             EEETTTTEEEE
T ss_pred             eeeCCcCChhh
Confidence            45677777644

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=80.09  E-value=0.6  Score=24.44  Aligned_cols=38  Identities=24%  Similarity=0.440  Sum_probs=25.4

Q ss_pred             hHHHHHHHhhC--CCC-----ceecCCCCccccCchHHHHHHHHhc
Q psy3483          57 SKMRSHIRTHT--KDR-----PYKCFYCDYRSNERSNVKAHMIRRH   95 (99)
Q Consensus        57 ~~~~~h~~~~~--~~~-----~~~C~~c~~~f~~~~~l~~H~~~~~   95 (99)
                      ..|..|.....  |..     -|+|..|++ +....+|..|++.|.
T Consensus       125 grlieHiK~~m~~GqDyvFWQFYKCe~CgK-YvDie~~~~H~k~HG  169 (218)
T d2czra1         125 AALVNHIKNNALAGQDYIFWQFYKCEECGK-YVDIENLEAHLREHG  169 (218)
T ss_dssp             HHHHHHHHTTCCBTTTEEEEEEEECTTTCC-EEEGGGHHHHHHTTT
T ss_pred             HHHHHHHHhccccCcceEEEEEeehhhcCc-eecHHHHHHHHHHcC
Confidence            45666666542  222     278999987 456678888988875