Psyllid ID: psy3489

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKSSEQNIMDDPFIREHIEDLLRNIRTQVMH
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccHcccccHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MELLQDFYETTLEALKDAkndrlwfktntklgklyfdreDFNKLSRILKQLHQscqtddgeddlkKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKsseqnimddpFIREHIEDLLRNIRTQVMH
Flexible Loop (DISEMBL)
MELLQDFYETTLEalkdakndrlwfktntklgklyfDREDFNKLSRILKQLHqscqtddgeddLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKsseqnimddpfIREHIEDLLRnirtqvmh
Low Complexity Region (SEG)
MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQknnkklkklYELIQVKSSEQNIMDDPFIREHIEDLLRNIRTQVMH
Disordered region (IsUnstruct)
*****DFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSC********LKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKSSEQNIMDDPFIREHIEDLLRN*******
Disordered Region (DISOPRED)
*ELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQL******************LLEIYALEIQMYTAQKNNKKLKKLYELIQVKSSEQNIMDDPFIREHIEDLLRNIRTQ***
Disordered Region (DISEMBL)
MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLH**********DLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKSSEQNIMDDPFIREHIEDLLRNIRTQVMH
Disordered Region (DISPRO)
MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKSSEQNIMDDPFIREHIEDLLRNIRTQ***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKSSEQNIMDDPFIREHIEDLLRNIRTQVMH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	129	2.2.26 [Sep-21-2011]
Q94899	444	COP9 signalosome complex	yes	N/A	0.883	0.256	0.782	6e-45
Q6IQT4	443	COP9 signalosome complex	yes	N/A	0.883	0.257	0.782	1e-44
P61203	443	COP9 signalosome complex	yes	N/A	0.883	0.257	0.773	3e-44
P61202	443	COP9 signalosome complex	yes	N/A	0.883	0.257	0.773	3e-44
P61201	443	COP9 signalosome complex	yes	N/A	0.883	0.257	0.773	3e-44
Q6IR75	441	COP9 signalosome complex	N/A	N/A	0.883	0.258	0.765	1e-43
O01422	495	COP9 signalosome complex	yes	N/A	0.860	0.224	0.651	1e-35
Q8W207	439	COP9 signalosome complex	yes	N/A	0.775	0.227	0.594	5e-30
Q54HL6	449	COP9 signalosome complex	yes	N/A	0.790	0.227	0.524	7e-27
Q5B3U7	506	COP9 signalosome complex	no	N/A	0.782	0.199	0.480	2e-24

>sp|Q94899|CSN2_DROME COP9 signalosome complex subunit 2 OS=Drosophila melanogaster GN=alien PE=1 SV=2

 Score =  179 bits (453), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 90/115 (78%), Positives = 99/115 (86%), Gaps = 1/115 (0%)

Query: 1   MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
           M LLQ+FYETTL+AL+DAKNDRLWFKTNTKLGKLYFDR DF KL +ILKQLHQSCQTDDG
Sbjct: 126 MALLQNFYETTLDALRDAKNDRLWFKTNTKLGKLYFDRSDFTKLQKILKQLHQSCQTDDG 185

Query: 61  EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYE-LIQVKSSEQNIMDDPFIRE 114
           EDDLKKGTQLLEIYALEIQMYT QKNNKKLK LYE  + +KS+  + +    IRE
Sbjct: 186 EDDLKKGTQLLEIYALEIQMYTVQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRE 240

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of the SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. The CSN complex plays an essential role in oogenesis and embryogenesis and is required for proper photoreceptor R cell differentiation and promote lamina glial cell migration or axon targeting. It also promotes Ubl-dependent degradation of cyclin E (CycE) during early oogenesis.
Drosophila melanogaster (taxid: 7227)

>sp|Q6IQT4|CSN2_DANRE COP9 signalosome complex subunit 2 OS=Danio rerio GN=cops2 PE=2 SV=1

 Score =  177 bits (450), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 90/115 (78%), Positives = 101/115 (87%), Gaps = 1/115 (0%)

Query: 1   MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
           M+LLQ+FYETTLEALKDAKNDRLWFKTNTKLGKLY +RE+F KL +IL+QLHQSCQTDDG
Sbjct: 125 MDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEFGKLQKILRQLHQSCQTDDG 184

Query: 61  EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYE-LIQVKSSEQNIMDDPFIRE 114
           EDDLKKGTQLLEIYALEIQMYTAQKNNKKLK LYE  + +KS+  + +    IRE
Sbjct: 185 EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRE 239

Essential component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of E3 ligase complexes, leading to modify the Ubl ligase activity.

Danio rerio (taxid: 7955)

>sp|P61203|CSN2_RAT COP9 signalosome complex subunit 2 OS=Rattus norvegicus GN=Cops2 PE=2 SV=1

 Score =  176 bits (446), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 89/115 (77%), Positives = 101/115 (87%), Gaps = 1/115 (0%)

Query: 1   MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
           M+LLQ+FYETTLEALKDAKNDRLWFKTNTKLGKLY +RE++ KL +IL+QLHQSCQTDDG
Sbjct: 125 MDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDG 184

Query: 61  EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYE-LIQVKSSEQNIMDDPFIRE 114
           EDDLKKGTQLLEIYALEIQMYTAQKNNKKLK LYE  + +KS+  + +    IRE
Sbjct: 185 EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRE 239

Essential component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8/ICSBP, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively. Involved in early stage of neuronal differentiation via its interaction with NIF3L1.

Rattus norvegicus (taxid: 10116)

>sp|P61202|CSN2_MOUSE COP9 signalosome complex subunit 2 OS=Mus musculus GN=Cops2 PE=1 SV=1

 Score =  176 bits (446), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 89/115 (77%), Positives = 101/115 (87%), Gaps = 1/115 (0%)

Query: 1   MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
           M+LLQ+FYETTLEALKDAKNDRLWFKTNTKLGKLY +RE++ KL +IL+QLHQSCQTDDG
Sbjct: 125 MDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDG 184

Query: 61  EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYE-LIQVKSSEQNIMDDPFIRE 114
           EDDLKKGTQLLEIYALEIQMYTAQKNNKKLK LYE  + +KS+  + +    IRE
Sbjct: 185 EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRE 239

Essential component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8/ICSBP, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively. Involved in early stage of neuronal differentiation via its interaction with NIF3L1.

Mus musculus (taxid: 10090)

>sp|P61201|CSN2_HUMAN COP9 signalosome complex subunit 2 OS=Homo sapiens GN=COPS2 PE=1 SV=1

 Score =  176 bits (446), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 89/115 (77%), Positives = 101/115 (87%), Gaps = 1/115 (0%)

Query: 1   MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
           M+LLQ+FYETTLEALKDAKNDRLWFKTNTKLGKLY +RE++ KL +IL+QLHQSCQTDDG
Sbjct: 125 MDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDG 184

Query: 61  EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYE-LIQVKSSEQNIMDDPFIRE 114
           EDDLKKGTQLLEIYALEIQMYTAQKNNKKLK LYE  + +KS+  + +    IRE
Sbjct: 185 EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRE 239

Essential component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8/ICSBP, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively. Involved in early stage of neuronal differentiation via its interaction with NIF3L1.

Homo sapiens (taxid: 9606)

>sp|Q6IR75|CSN2_XENLA COP9 signalosome complex subunit 2 (Fragment) OS=Xenopus laevis GN=csn2 PE=2 SV=1

 Score =  175 bits (443), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 101/115 (87%), Gaps = 1/115 (0%)

Query: 1   MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
           M+LLQ+FYETTL+ALKDAKNDRLWFKTNTKLGKLY +RE++ KL +IL+QLHQSCQTDDG
Sbjct: 123 MDLLQEFYETTLDALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDG 182

Query: 61  EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYE-LIQVKSSEQNIMDDPFIRE 114
           EDDLKKGTQLLEIYALEIQMYTAQKNNKKLK LYE  + +KS+  + +    IRE
Sbjct: 183 EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRE 237

Essential component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of E3 ligase complexes, leading to modify the Ubl ligase activity.

Xenopus laevis (taxid: 8355)

>sp|O01422|CSN2_CAEEL COP9 signalosome complex subunit 2 OS=Caenorhabditis elegans GN=csn-2 PE=1 SV=2

 Score =  147 bits (372), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/112 (65%), Positives = 88/112 (78%)

Query: 1   MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
           M+LLQ FYETTL+ALKDAKN+RLWFKTNTKLGKL+FD  +F KL +I+KQL  SC+ + G
Sbjct: 122 MDLLQHFYETTLDALKDAKNERLWFKTNTKLGKLFFDLHEFTKLEKIVKQLKVSCKNEQG 181

Query: 61  EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKSSEQNIMDDPFI 112
           E+D +KGTQLLEIYALEIQMYT QKNNK LK +YEL       ++ +  P I
Sbjct: 182 EEDQRKGTQLLEIYALEIQMYTEQKNNKALKWVYELATQAIHTKSAIPHPLI 233

Essential component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of the SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. The CSN complex plays an essential role in embryogenesis and oogenesis and is required to regulate microtubule stability in the early embryo. Mediates mei-3/katanin targeting for degradation at the meiosis to mitosis transition via deneddylation of cul-3.

Caenorhabditis elegans (taxid: 6239)

>sp|Q8W207|CSN2_ARATH COP9 signalosome complex subunit 2 OS=Arabidopsis thaliana GN=CSN2 PE=1 SV=1

 Score =  129 bits (324), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 87/101 (86%), Gaps = 1/101 (0%)

Query: 3   LLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGED 62
           LLQ+FY+TTL+AL++AKN+RLWFKTN KL  ++FD  ++ ++++ILK+LH+SCQ +DG D
Sbjct: 123 LLQEFYQTTLKALEEAKNERLWFKTNLKLCNIWFDIGEYRRMTKILKELHKSCQKEDGTD 182

Query: 63  DLKKGTQLLEIYALEIQMYTAQKNNKKLKKLY-ELIQVKSS 102
           D KKG+QLLE+YA+EIQ+YT  K+NKKLK+LY + + +KS+
Sbjct: 183 DQKKGSQLLEVYAIEIQIYTETKDNKKLKQLYHKALAIKSA 223

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. It is involved in repression of photomorphogenesis in darkness by regulating the activity of COP1-containing Ubl ligase complexes. The complex is also required for degradation of IAA6 by regulating the activity of the Ubl ligase SCF-TIR complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54HL6|CSN2_DICDI COP9 signalosome complex subunit 2 OS=Dictyostelium discoideum GN=csn2 PE=1 SV=1

 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 84/103 (81%), Gaps = 1/103 (0%)

Query: 1   MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
           ++++Q  ++ TL++L D KN+R+WF+TN KL KL F++ ++ +L++IL+ LH+SC+ +DG
Sbjct: 129 LDMIQKVFDLTLKSLLDTKNERVWFRTNLKLAKLLFEKAEYGRLAKILRDLHKSCELEDG 188

Query: 61  EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLY-ELIQVKSS 102
            DD KKG+QL++IYALEIQMYT  KNNKKLK LY + +++KS+
Sbjct: 189 TDDQKKGSQLVDIYALEIQMYTETKNNKKLKDLYKKALEIKSA 231

Essential component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of E3 ligase complexes, leading to modify the Ubl ligase activity.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5B3U7|CSN2_EMENI COP9 signalosome complex subunit 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=csnB PE=1 SV=2

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 77/102 (75%), Gaps = 1/102 (0%)

Query: 2   ELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGE 61
           + +++FY  TL + ++  N+RLW KTN KL +L+ +R ++ +LS+ +++LH++CQ +DG 
Sbjct: 131 QCMEEFYSLTLNSFQNTNNERLWLKTNIKLARLWLERREYGQLSKKVRELHRACQREDGS 190

Query: 62  DDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYE-LIQVKSS 102
           DD  KGT LLE+YALEIQMY   KNNK+LK LY+  ++V+S+
Sbjct: 191 DDPSKGTYLLELYALEIQMYAETKNNKRLKALYQRALRVRSA 232

Component of the COP9 signalosome (CSN) complex that acts as an regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunit of SCF-type E3 ubiquitin-protein ligase complexes (By similarity). The CSN complex seems to link protein degradation to sexual development. Required for fruit body formation.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
345485523	422	PREDICTED: COP9 signalosome complex subu	0.883	0.270	0.826	8e-46
383856485	444	PREDICTED: COP9 signalosome complex subu	0.883	0.256	0.826	1e-45
380023534	444	PREDICTED: COP9 signalosome complex subu	0.883	0.256	0.826	1e-45
350419171	628	PREDICTED: COP9 signalosome complex subu	0.883	0.181	0.826	1e-45
383856487	453	PREDICTED: COP9 signalosome complex subu	0.883	0.251	0.826	1e-45
345485521	444	PREDICTED: COP9 signalosome complex subu	0.883	0.256	0.826	1e-45
328792450	621	PREDICTED: COP9 signalosome complex subu	0.883	0.183	0.826	1e-45
307200707	444	COP9 signalosome complex subunit 2 [Harp	0.883	0.256	0.817	3e-45
322788770	452	hypothetical protein SINV_00566 [Solenop	0.883	0.252	0.817	3e-45
307170813	444	COP9 signalosome complex subunit 2 [Camp	0.883	0.256	0.817	3e-45

>gi|345485523|ref|XP_001607475.2| PREDICTED: COP9 signalosome complex subunit 2-like isoform 1 [Nasonia vitripennis]

 Score =  187 bits (476), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 95/115 (82%), Positives = 103/115 (89%), Gaps = 1/115 (0%)

Query: 1   MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
           MELLQDFYETTL+ALKDAKNDRLWFKTNTKLGKLYFDR DFNKL++ILKQLHQSCQTDDG
Sbjct: 104 MELLQDFYETTLDALKDAKNDRLWFKTNTKLGKLYFDRSDFNKLAKILKQLHQSCQTDDG 163

Query: 61  EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYE-LIQVKSSEQNIMDDPFIRE 114
           EDDLKKGTQLLEIYALEIQMYTAQKNNKKLK LYE  + +KS+  + +    IRE
Sbjct: 164 EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKTLYEQSLHIKSAIPHPLIMGVIRE 218

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856485|ref|XP_003703739.1| PREDICTED: COP9 signalosome complex subunit 2-like isoform 1 [Megachile rotundata]

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 95/115 (82%), Positives = 103/115 (89%), Gaps = 1/115 (0%)

Query: 1   MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
           MELLQDFYETTL+ALKDAKNDRLWFKTNTKLGKLYFDR DFNKL++ILKQLHQSCQTDDG
Sbjct: 126 MELLQDFYETTLDALKDAKNDRLWFKTNTKLGKLYFDRSDFNKLAKILKQLHQSCQTDDG 185

Query: 61  EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYE-LIQVKSSEQNIMDDPFIRE 114
           EDDLKKGTQLLEIYALEIQMYTAQKNNKKLK LYE  + +KS+  + +    IRE
Sbjct: 186 EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKTLYEQSLHIKSAIPHPLIMGVIRE 240

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023534|ref|XP_003695573.1| PREDICTED: COP9 signalosome complex subunit 2-like [Apis florea]

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 95/115 (82%), Positives = 103/115 (89%), Gaps = 1/115 (0%)

Query: 1   MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
           MELLQDFYETTL+ALKDAKNDRLWFKTNTKLGKLYFDR DFNKL++ILKQLHQSCQTDDG
Sbjct: 126 MELLQDFYETTLDALKDAKNDRLWFKTNTKLGKLYFDRSDFNKLAKILKQLHQSCQTDDG 185

Query: 61  EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYE-LIQVKSSEQNIMDDPFIRE 114
           EDDLKKGTQLLEIYALEIQMYTAQKNNKKLK LYE  + +KS+  + +    IRE
Sbjct: 186 EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKTLYEQSLHIKSAIPHPLIMGVIRE 240

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419171|ref|XP_003492095.1| PREDICTED: COP9 signalosome complex subunit 2-like [Bombus impatiens]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 95/115 (82%), Positives = 103/115 (89%), Gaps = 1/115 (0%)

Query: 1   MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
           MELLQDFYETTL+ALKDAKNDRLWFKTNTKLGKLYFDR DFNKL++ILKQLHQSCQTDDG
Sbjct: 104 MELLQDFYETTLDALKDAKNDRLWFKTNTKLGKLYFDRSDFNKLAKILKQLHQSCQTDDG 163

Query: 61  EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYE-LIQVKSSEQNIMDDPFIRE 114
           EDDLKKGTQLLEIYALEIQMYTAQKNNKKLK LYE  + +KS+  + +    IRE
Sbjct: 164 EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKTLYEQSLHIKSAIPHPLIMGVIRE 218

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856487|ref|XP_003703740.1| PREDICTED: COP9 signalosome complex subunit 2-like isoform 2 [Megachile rotundata]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 95/115 (82%), Positives = 103/115 (89%), Gaps = 1/115 (0%)

Query: 1   MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
           MELLQDFYETTL+ALKDAKNDRLWFKTNTKLGKLYFDR DFNKL++ILKQLHQSCQTDDG
Sbjct: 135 MELLQDFYETTLDALKDAKNDRLWFKTNTKLGKLYFDRSDFNKLAKILKQLHQSCQTDDG 194

Query: 61  EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYE-LIQVKSSEQNIMDDPFIRE 114
           EDDLKKGTQLLEIYALEIQMYTAQKNNKKLK LYE  + +KS+  + +    IRE
Sbjct: 195 EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKTLYEQSLHIKSAIPHPLIMGVIRE 249

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485521|ref|XP_003425288.1| PREDICTED: COP9 signalosome complex subunit 2-like isoform 2 [Nasonia vitripennis]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 95/115 (82%), Positives = 103/115 (89%), Gaps = 1/115 (0%)

Query: 1   MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
           MELLQDFYETTL+ALKDAKNDRLWFKTNTKLGKLYFDR DFNKL++ILKQLHQSCQTDDG
Sbjct: 126 MELLQDFYETTLDALKDAKNDRLWFKTNTKLGKLYFDRSDFNKLAKILKQLHQSCQTDDG 185

Query: 61  EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYE-LIQVKSSEQNIMDDPFIRE 114
           EDDLKKGTQLLEIYALEIQMYTAQKNNKKLK LYE  + +KS+  + +    IRE
Sbjct: 186 EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKTLYEQSLHIKSAIPHPLIMGVIRE 240

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328792450|ref|XP_392587.3| PREDICTED: COP9 signalosome complex subunit 2-like isoform 1 [Apis mellifera]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 95/115 (82%), Positives = 103/115 (89%), Gaps = 1/115 (0%)

Query: 1   MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
           MELLQDFYETTL+ALKDAKNDRLWFKTNTKLGKLYFDR DFNKL++ILKQLHQSCQTDDG
Sbjct: 104 MELLQDFYETTLDALKDAKNDRLWFKTNTKLGKLYFDRSDFNKLAKILKQLHQSCQTDDG 163

Query: 61  EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYE-LIQVKSSEQNIMDDPFIRE 114
           EDDLKKGTQLLEIYALEIQMYTAQKNNKKLK LYE  + +KS+  + +    IRE
Sbjct: 164 EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKTLYEQSLHIKSAIPHPLIMGVIRE 218

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200707|gb|EFN80804.1| COP9 signalosome complex subunit 2 [Harpegnathos saltator]

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 94/115 (81%), Positives = 103/115 (89%), Gaps = 1/115 (0%)

Query: 1   MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
           MELLQDFYETTL+ALKDAKNDRLWFKTNTKLGKLY+DR DFNKL++ILKQLHQSCQTDDG
Sbjct: 126 MELLQDFYETTLDALKDAKNDRLWFKTNTKLGKLYYDRSDFNKLAKILKQLHQSCQTDDG 185

Query: 61  EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYE-LIQVKSSEQNIMDDPFIRE 114
           EDDLKKGTQLLEIYALEIQMYTAQKNNKKLK LYE  + +KS+  + +    IRE
Sbjct: 186 EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKTLYEQSLHIKSAIPHPLIMGVIRE 240

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322788770|gb|EFZ14338.1| hypothetical protein SINV_00566 [Solenopsis invicta]

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 94/115 (81%), Positives = 103/115 (89%), Gaps = 1/115 (0%)

Query: 1   MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
           MELLQDFYETTL+ALKDAKNDRLWFKTNTKLGKLY+DR DFNKL++ILKQLHQSCQTDDG
Sbjct: 134 MELLQDFYETTLDALKDAKNDRLWFKTNTKLGKLYYDRSDFNKLAKILKQLHQSCQTDDG 193

Query: 61  EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYE-LIQVKSSEQNIMDDPFIRE 114
           EDDLKKGTQLLEIYALEIQMYTAQKNNKKLK LYE  + +KS+  + +    IRE
Sbjct: 194 EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKTLYEQSLHIKSAIPHPLIMGVIRE 248

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170813|gb|EFN62929.1| COP9 signalosome complex subunit 2 [Camponotus floridanus]

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 94/115 (81%), Positives = 103/115 (89%), Gaps = 1/115 (0%)

Query: 1   MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
           MELLQDFYETTL+ALKDAKNDRLWFKTNTKLGKLY+DR DFNKL++ILKQLHQSCQTDDG
Sbjct: 126 MELLQDFYETTLDALKDAKNDRLWFKTNTKLGKLYYDRSDFNKLAKILKQLHQSCQTDDG 185

Query: 61  EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYE-LIQVKSSEQNIMDDPFIRE 114
           EDDLKKGTQLLEIYALEIQMYTAQKNNKKLK LYE  + +KS+  + +    IRE
Sbjct: 186 EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKTLYEQSLHIKSAIPHPLIMGVIRE 240

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
ZFIN|ZDB-GENE-040625-15	443	cops2 "COP9 constitutive photo	0.883	0.257	0.713	3.4e-38
FB|FBgn0013746	444	alien "alien" [Drosophila mela	0.883	0.256	0.713	5.5e-38
UNIPROTKB|G3X736	450	COPS2 "Uncharacterized protein	0.883	0.253	0.704	7e-38
UNIPROTKB|E2REA8	443	COPS2 "Uncharacterized protein	0.883	0.257	0.704	7e-38
UNIPROTKB|P61201	443	COPS2 "COP9 signalosome comple	0.883	0.257	0.704	7e-38
UNIPROTKB|F1SQG5	385	COPS2 "Uncharacterized protein	0.883	0.296	0.704	7e-38
MGI|MGI:1330276	443	Cops2 "COP9 (constitutive phot	0.883	0.257	0.704	7e-38
RGD|628791	443	Cops2 "COP9 signalosome subuni	0.883	0.257	0.704	7e-38
UNIPROTKB|P61203	443	Cops2 "COP9 signalosome comple	0.883	0.257	0.704	7e-38
TAIR|locus:2059289	439	FUS12 "FUSCA 12" [Arabidopsis	0.775	0.227	0.524	1.1e-34

ZFIN|ZDB-GENE-040625-15 cops2 "COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)" [Danio rerio (taxid:7955)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 82/115 (71%), Positives = 93/115 (80%)

Query:     1 MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
             M+LLQ+FYETTLEALKDAKNDRLWFKTNTKLGKLY +RE+F KL +IL+QLHQSCQTDDG
Sbjct:   125 MDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEFGKLQKILRQLHQSCQTDDG 184

Query:    61 EDDLKKGTQLLEIYALEIQMYTAQXXXXXXXXXYEL-IQVKSSEQNIMDDPFIRE 114
             EDDLKKGTQLLEIYALEIQMYTAQ         YE  + +KS+  + +    IRE
Sbjct:   185 EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRE 239

GO:0008150 "biological_process" evidence=ND

GO:0008180 "signalosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

FB|FBgn0013746 alien "alien" [Drosophila melanogaster (taxid:7227)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 82/115 (71%), Positives = 91/115 (79%)

Query:     1 MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
             M LLQ+FYETTL+AL+DAKNDRLWFKTNTKLGKLYFDR DF KL +ILKQLHQSCQTDDG
Sbjct:   126 MALLQNFYETTLDALRDAKNDRLWFKTNTKLGKLYFDRSDFTKLQKILKQLHQSCQTDDG 185

Query:    61 EDDLKKGTQLLEIYALEIQMYTAQXXXXXXXXXYEL-IQVKSSEQNIMDDPFIRE 114
             EDDLKKGTQLLEIYALEIQMYT Q         YE  + +KS+  + +    IRE
Sbjct:   186 EDDLKKGTQLLEIYALEIQMYTVQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRE 240

GO:0008231 "repressor ecdysone receptor complex" evidence=IPI

GO:0003714 "transcription corepressor activity" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0035257 "nuclear hormone receptor binding" evidence=IPI

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0008180 "signalosome" evidence=NAS;IPI

GO:0007165 "signal transduction" evidence=ISS

GO:0004871 "signal transducer activity" evidence=ISS

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0050821 "protein stabilization" evidence=IMP

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|G3X736 COPS2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 81/115 (70%), Positives = 93/115 (80%)

Query:     1 MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
             M+LLQ+FYETTLEALKDAKNDRLWFKTNTKLGKLY +RE++ KL +IL+QLHQSCQTDDG
Sbjct:   132 MDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDG 191

Query:    61 EDDLKKGTQLLEIYALEIQMYTAQXXXXXXXXXYEL-IQVKSSEQNIMDDPFIRE 114
             EDDLKKGTQLLEIYALEIQMYTAQ         YE  + +KS+  + +    IRE
Sbjct:   192 EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRE 246

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0010388 "cullin deneddylation" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

UNIPROTKB|E2REA8 COPS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 81/115 (70%), Positives = 93/115 (80%)

Query:     1 MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
             M+LLQ+FYETTLEALKDAKNDRLWFKTNTKLGKLY +RE++ KL +IL+QLHQSCQTDDG
Sbjct:   125 MDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDG 184

Query:    61 EDDLKKGTQLLEIYALEIQMYTAQXXXXXXXXXYEL-IQVKSSEQNIMDDPFIRE 114
             EDDLKKGTQLLEIYALEIQMYTAQ         YE  + +KS+  + +    IRE
Sbjct:   185 EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRE 239

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0010388 "cullin deneddylation" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

UNIPROTKB|P61201 COPS2 "COP9 signalosome complex subunit 2" [Homo sapiens (taxid:9606)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 81/115 (70%), Positives = 93/115 (80%)

Query:     1 MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
             M+LLQ+FYETTLEALKDAKNDRLWFKTNTKLGKLY +RE++ KL +IL+QLHQSCQTDDG
Sbjct:   125 MDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDG 184

Query:    61 EDDLKKGTQLLEIYALEIQMYTAQXXXXXXXXXYEL-IQVKSSEQNIMDDPFIRE 114
             EDDLKKGTQLLEIYALEIQMYTAQ         YE  + +KS+  + +    IRE
Sbjct:   185 EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRE 239

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0030182 "neuron differentiation" evidence=IEA

GO:0004871 "signal transducer activity" evidence=NAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0007165 "signal transduction" evidence=NAS

GO:0008180 "signalosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0010388 "cullin deneddylation" evidence=IDA

UNIPROTKB|F1SQG5 COPS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 81/115 (70%), Positives = 93/115 (80%)

Query:     1 MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
             M+LLQ+FYETTLEALKDAKNDRLWFKTNTKLGKLY +RE++ KL +IL+QLHQSCQTDDG
Sbjct:   117 MDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDG 176

Query:    61 EDDLKKGTQLLEIYALEIQMYTAQXXXXXXXXXYEL-IQVKSSEQNIMDDPFIRE 114
             EDDLKKGTQLLEIYALEIQMYTAQ         YE  + +KS+  + +    IRE
Sbjct:   177 EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRE 231

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0010388 "cullin deneddylation" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

MGI|MGI:1330276 Cops2 "COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)" [Mus musculus (taxid:10090)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 81/115 (70%), Positives = 93/115 (80%)

Query:     1 MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
             M+LLQ+FYETTLEALKDAKNDRLWFKTNTKLGKLY +RE++ KL +IL+QLHQSCQTDDG
Sbjct:   125 MDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDG 184

Query:    61 EDDLKKGTQLLEIYALEIQMYTAQXXXXXXXXXYEL-IQVKSSEQNIMDDPFIRE 114
             EDDLKKGTQLLEIYALEIQMYTAQ         YE  + +KS+  + +    IRE
Sbjct:   185 EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRE 239

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0003714 "transcription corepressor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0008180 "signalosome" evidence=ISO;IDA

GO:0008283 "cell proliferation" evidence=IMP

GO:0010388 "cullin deneddylation" evidence=ISO

GO:0030182 "neuron differentiation" evidence=ISO

GO:0035914 "skeletal muscle cell differentiation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

RGD|628791 Cops2 "COP9 signalosome subunit 2" [Rattus norvegicus (taxid:10116)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 81/115 (70%), Positives = 93/115 (80%)

Query:     1 MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
             M+LLQ+FYETTLEALKDAKNDRLWFKTNTKLGKLY +RE++ KL +IL+QLHQSCQTDDG
Sbjct:   125 MDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDG 184

Query:    61 EDDLKKGTQLLEIYALEIQMYTAQXXXXXXXXXYEL-IQVKSSEQNIMDDPFIRE 114
             EDDLKKGTQLLEIYALEIQMYTAQ         YE  + +KS+  + +    IRE
Sbjct:   185 EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRE 239

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0003714 "transcription corepressor activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0008180 "signalosome" evidence=IEA;ISO

GO:0008283 "cell proliferation" evidence=IEA;ISO

GO:0010388 "cullin deneddylation" evidence=IEA;ISO

GO:0030182 "neuron differentiation" evidence=IDA

GO:0035914 "skeletal muscle cell differentiation" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA;ISO

UNIPROTKB|P61203 Cops2 "COP9 signalosome complex subunit 2" [Rattus norvegicus (taxid:10116)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 81/115 (70%), Positives = 93/115 (80%)

Query:     1 MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
             M+LLQ+FYETTLEALKDAKNDRLWFKTNTKLGKLY +RE++ KL +IL+QLHQSCQTDDG
Sbjct:   125 MDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDG 184

Query:    61 EDDLKKGTQLLEIYALEIQMYTAQXXXXXXXXXYEL-IQVKSSEQNIMDDPFIRE 114
             EDDLKKGTQLLEIYALEIQMYTAQ         YE  + +KS+  + +    IRE
Sbjct:   185 EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRE 239

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0010388 "cullin deneddylation" evidence=IEA

TAIR|locus:2059289 FUS12 "FUSCA 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
 Identities = 53/101 (52%), Positives = 78/101 (77%)

Query:     3 LLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGED 62
             LLQ+FY+TTL+AL++AKN+RLWFKTN KL  ++FD  ++ ++++ILK+LH+SCQ +DG D
Sbjct:   123 LLQEFYQTTLKALEEAKNERLWFKTNLKLCNIWFDIGEYRRMTKILKELHKSCQKEDGTD 182

Query:    63 DLKKGTQLLEIYALEIQMYTAQXXXXXXXXXY-ELIQVKSS 102
             D KKG+QLLE+YA+EIQ+YT           Y + + +KS+
Sbjct:   183 DQKKGSQLLEVYAIEIQIYTETKDNKKLKQLYHKALAIKSA 223

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0030163 "protein catabolic process" evidence=TAS

GO:0008180 "signalosome" evidence=TAS;IPI

GO:0009640 "photomorphogenesis" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010388 "cullin deneddylation" evidence=RCA;IMP

GO:0005829 "cytosol" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8W207	CSN2_ARATH	No assigned EC number	0.5940	0.7751	0.2277	yes	N/A
P61201	CSN2_HUMAN	No assigned EC number	0.7739	0.8837	0.2573	yes	N/A
P61203	CSN2_RAT	No assigned EC number	0.7739	0.8837	0.2573	yes	N/A
P61202	CSN2_MOUSE	No assigned EC number	0.7739	0.8837	0.2573	yes	N/A
O01422	CSN2_CAEEL	No assigned EC number	0.6517	0.8604	0.2242	yes	N/A
Q54HL6	CSN2_DICDI	No assigned EC number	0.5242	0.7906	0.2271	yes	N/A
Q94899	CSN2_DROME	No assigned EC number	0.7826	0.8837	0.2567	yes	N/A
Q6IQT4	CSN2_DANRE	No assigned EC number	0.7826	0.8837	0.2573	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
KOG1464|consensus	440		100.0
PF03704	146	BTAD: Bacterial transcriptional activator domain;	90.2
KOG1464|consensus	440		89.45
PRK05685	132	fliS flagellar protein FliS; Validated	89.28
TIGR00208	124	fliS flagellar biosynthetic protein FliS. The func	88.91
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	87.49
KOG1463|consensus	411		83.0
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	81.08

>KOG1464|consensus

Probab=100.00  E-value=1.7e-53  Score=357.36  Aligned_cols=127  Identities=83%  Similarity=1.246  Sum_probs=123.5

Q ss_pred             ChHHHHHHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHH
Q psy3489           1 MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQM   80 (129)
Q Consensus         1 ~~~l~~fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQm   80 (129)
                      |+++|.||++||+||++++|||||||||+|||+||||++||.++++++++||.||+.+||+||++||||||||||+||||
T Consensus       121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm  200 (440)
T KOG1464|consen  121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM  200 (440)
T ss_pred             hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhchHHHHHH-------------------------------------------------------------------
Q psy3489          81 YTAQKNNKKLKKL-------------------------------------------------------------------   93 (129)
Q Consensus        81 yt~~kn~kkLk~l-------------------------------------------------------------------   93 (129)
                      ||++||||+||.+                                                                   
T Consensus       201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLAN  280 (440)
T KOG1464|consen  201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLAN  280 (440)
T ss_pred             hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHH
Confidence            9999999999988                                                                   


Q ss_pred             -----------------------------------------HHHHHhhhcccccCCChHHHHHHHHHHHHHhhhhc
Q psy3489          94 -----------------------------------------YELIQVKSSEQNIMDDPFIREHIEDLLRNIRTQVM  128 (129)
Q Consensus        94 -----------------------------------------Y~~i~~~~n~~~~~~~PfI~~~I~e~~~~~r~~~~  128 (129)
                                                               |++|+ ++|+++||+|||||+||||||||||||||
T Consensus       281 MLmkS~iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~NdI~eFE~Il-~~~~~~IM~DpFIReh~EdLl~niRTQVL  355 (440)
T KOG1464|consen  281 MLMKSGINPFDSQEAKPYKNDPEILAMTNLVAAYQNNDIIEFERIL-KSNRSNIMDDPFIREHIEDLLRNIRTQVL  355 (440)
T ss_pred             HHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHHhcccHHHHHHHH-HhhhccccccHHHHHHHHHHHHHHHHHHH
Confidence                                                     77884 88999999999999999999999999997

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=90.20  E-value=4.7  Score=28.65  Aligned_cols=87  Identities=20%  Similarity=0.287  Sum_probs=62.8

Q ss_pred             cchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhh
Q psy3489          22 RLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKS  101 (129)
Q Consensus        22 RLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~~~~  101 (129)
                      +.++.+-.+++..+++.|+|+.+....+.+-..-.            +-=++|..-|+.|...++...-.+.|++.....
T Consensus        59 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP------------~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l  126 (146)
T PF03704_consen   59 ELYLDALERLAEALLEAGDYEEALRLLQRALALDP------------YDEEAYRLLMRALAAQGRRAEALRVYERYRRRL  126 (146)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST------------T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC------------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence            56788899999999999999999988887777643            334578888999999999999999999852111


Q ss_pred             -cccccCCChHHHHHHHHHH
Q psy3489         102 -SEQNIMDDPFIREHIEDLL  120 (129)
Q Consensus       102 -n~~~~~~~PfI~~~I~e~~  120 (129)
                       ..-.+-+.|.+.+..+++|
T Consensus       127 ~~elg~~Ps~~~~~l~~~il  146 (146)
T PF03704_consen  127 REELGIEPSPETRALYREIL  146 (146)
T ss_dssp             HHHHS----HHHHHHHHHHH
T ss_pred             HHHhCcCcCHHHHHHHHHhC
Confidence             2346778888888877765

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1464|consensus

Probab=89.45  E-value=0.21  Score=43.41  Aligned_cols=19  Identities=16%  Similarity=0.198  Sum_probs=17.3

Q ss_pred             cccccCCChHHHHHHHHHH
Q psy3489         102 SEQNIMDDPFIREHIEDLL  120 (129)
Q Consensus       102 n~~~~~~~PfI~~~I~e~~  120 (129)
                      ++.++++||.|+|+|+||=
T Consensus       219 hiKSAIPHPlImGvIRECG  237 (440)
T KOG1464|consen  219 HIKSAIPHPLIMGVIRECG  237 (440)
T ss_pred             HhhccCCchHHHhHHHHcC
Confidence            6789999999999999983

>PRK05685 fliS flagellar protein FliS; Validated

Probab=89.28  E-value=2.1  Score=31.63  Aligned_cols=78  Identities=23%  Similarity=0.333  Sum_probs=49.7

Q ss_pred             hhhhhHHHhhchhhhh-------HHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHh
Q psy3489          27 TNTKLGKLYFDREDFN-------KLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQV   99 (129)
Q Consensus        27 tnlKLakL~ld~~ey~-------~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~~   99 (129)
                      ..++.|+..++.+++.       |+..+|.+|..++..+.|++=.   .+|..+|.                    -+..
T Consensus        37 ~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA---~~L~~LY~--------------------y~~~   93 (132)
T PRK05685         37 SFLAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEVA---KNLSALYD--------------------YMIR   93 (132)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHHH---HHHHHHHH--------------------HHHH
Confidence            3567888888888887       7888999999999766553221   23444443                    3222


Q ss_pred             hhcccccCCChHHHHHHHHHHHHHhhhh
Q psy3489         100 KSSEQNIMDDPFIREHIEDLLRNIRTQV  127 (129)
Q Consensus       100 ~~n~~~~~~~PfI~~~I~e~~~~~r~~~  127 (129)
                      .....++=.||.....+..++..||.-|
T Consensus        94 ~L~~A~~~~d~~~l~ev~~il~~LreaW  121 (132)
T PRK05685         94 RLLEANLRNDVQAIDEVEGLLREIKEAW  121 (132)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            2223334456777777777777777644

>TIGR00208 fliS flagellar biosynthetic protein FliS

Probab=88.91  E-value=2.3  Score=31.20  Aligned_cols=78  Identities=18%  Similarity=0.280  Sum_probs=52.2

Q ss_pred             hhhhhHHHhhchhhh-------hHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHh
Q psy3489          27 TNTKLGKLYFDREDF-------NKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQV   99 (129)
Q Consensus        27 tnlKLakL~ld~~ey-------~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~~   99 (129)
                      ..++.|+..++.+++       .+...+|.+|..++..+.|++=.   .+                    |..||.-+..
T Consensus        33 ~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~eL~~~Ld~e~ggeiA---~n--------------------L~~LY~y~~~   89 (124)
T TIGR00208        33 KFIRLAAQAIENDDIERKNENLIKAQNIIQELNFTLDREKNIELS---AS--------------------LGALYDYMYR   89 (124)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccchHHH---HH--------------------HHHHHHHHHH
Confidence            366788888988888       56678899999998755543211   12                    3444444332


Q ss_pred             hhcccccCCChHHHHHHHHHHHHHhhhh
Q psy3489         100 KSSEQNIMDDPFIREHIEDLLRNIRTQV  127 (129)
Q Consensus       100 ~~n~~~~~~~PfI~~~I~e~~~~~r~~~  127 (129)
                      .....++=.||.+...+..++..||.-|
T Consensus        90 ~L~~An~~~d~~~l~ev~~~l~~Lr~aW  117 (124)
T TIGR00208        90 RLVQANIKNDTSKLAEVEGYVRDFRDAW  117 (124)
T ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence            3344555668888888888888888655

The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=87.49  E-value=0.76  Score=28.46  Aligned_cols=28  Identities=18%  Similarity=0.408  Sum_probs=25.3

Q ss_pred             hhhhhHHHhhchhhhhHHHHHHHHHHHh
Q psy3489          27 TNTKLGKLYFDREDFNKLSRILKQLHQS   54 (129)
Q Consensus        27 tnlKLakL~ld~~ey~~l~~~l~~L~~~   54 (129)
                      +++.||+.|++.|+++....+|.++-..
T Consensus         1 ~kLdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         1 TKLDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             CchHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            4688999999999999999999999853

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG1463|consensus

Probab=83.00  E-value=3.3  Score=36.61  Aligned_cols=90  Identities=20%  Similarity=0.343  Sum_probs=68.0

Q ss_pred             cccchhhh--hhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy3489          20 NDRLWFKT--NTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELI   97 (129)
Q Consensus        20 NeRLWfKt--nlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i   97 (129)
                      +.|-+++-  -.||+.||+|.++|...-.++.+|-+.+..=|+      .-.|.||+-+|--.|-+.+|.+|=|.---..
T Consensus       121 ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDD------K~lLvev~llESK~y~~l~Nl~KakasLTsA  194 (411)
T KOG1463|consen  121 EKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDD------KILLVEVHLLESKAYHALRNLPKAKASLTSA  194 (411)
T ss_pred             HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc------ccceeeehhhhhHHHHHHhcchhHHHHHHHH
Confidence            44555543  358999999999999998888888777764443      2379999999999999999999877655444


Q ss_pred             HhhhcccccCCChHHHHHHH
Q psy3489          98 QVKSSEQNIMDDPFIREHIE  117 (129)
Q Consensus        98 ~~~~n~~~~~~~PfI~~~I~  117 (129)
                        +++...|-.-|..-+-+.
T Consensus       195 --RT~AnaiYcpPqlQa~lD  212 (411)
T KOG1463|consen  195 --RTTANAIYCPPQLQATLD  212 (411)
T ss_pred             --HHhhcccccCHHHHHHHH
Confidence              345667777887777653

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=81.08  E-value=18  Score=25.94  Aligned_cols=66  Identities=15%  Similarity=0.199  Sum_probs=37.5

Q ss_pred             CcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy3489          19 KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELI   97 (129)
Q Consensus        19 ~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i   97 (129)
                      +++.+---..+.||+++++.|+|+.....+..+.          +   +.+.-.+..+.=+.|...++..+=+..|++.
T Consensus        79 ~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~----------~---~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   79 PDPELKPLARLRLARILLQQGQYDEALATLQQIP----------D---EAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc----------C---cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            3444444456667777777777776665553311          0   1123334455556677777777777777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	129
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	2e-15

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Length = 394

 Score = 70.3 bits (171), Expect = 2e-15
 Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 8/116 (6%)

Query: 1   MELLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDG 60
             +     +  +E  K  K   L      +L  LYFD   + +   +  QL +  +  D 
Sbjct: 75  TGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDD 134

Query: 61  EDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKSSEQNIMDDPFIREHI 116
           ++       L+E+  LE + Y A  N  K +        +++   I   P ++  +
Sbjct: 135 KN------LLVEVQLLESKTYHALSNLPKARAALT--SARTTANAIYCPPKVQGAL 182

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	99.81
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.89
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	98.63
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	98.54
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	96.86
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	90.77
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	90.19
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	87.97
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	87.34
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	86.9
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	86.83
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	84.82
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	83.8
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	83.78
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	83.31
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	82.85
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	81.2
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	80.75
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	80.26
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	80.13
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	80.02

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=99.81  E-value=6.8e-20  Score=155.22  Aligned_cols=109  Identities=19%  Similarity=0.215  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHhhCCcc-cchhhhhh--hhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHH
Q psy3489           4 LQDFYETTLEALKDAKND-RLWFKTNT--KLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQM   80 (129)
Q Consensus         4 l~~fYe~TL~aL~~~~Ne-RLWfKtnl--KLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQm   80 (129)
                      .+..|++++++++.++|+ |+|+|+++  |||++|+++|+|+++.+++.++++.|...|+      +++++|||++||||
T Consensus        75 ~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd------~~~llev~lle~~~  148 (394)
T 3txn_A           75 TGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDD------KNLLVEVQLLESKT  148 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC------THHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc------chhHHHHHHHHHHH
Confidence            467899999999999988 66669666  9999999999999999999999999996543      79999999999999


Q ss_pred             HHhhhchHHHHHHHHHHHhhhcccccCCChHHHHHHHHHH
Q psy3489          81 YTAQKNNKKLKKLYELIQVKSSEQNIMDDPFIREHIEDLL  120 (129)
Q Consensus        81 yt~~kn~kkLk~lY~~i~~~~n~~~~~~~PfI~~~I~e~~  120 (129)
                      |++++|++++++.|.++. + ..++|-+||.|.+.|+++.
T Consensus       149 ~~~~~n~~k~k~~l~~a~-~-~~~ai~~~p~i~a~i~~~~  186 (394)
T 3txn_A          149 YHALSNLPKARAALTSAR-T-TANAIYCPPKVQGALDLQS  186 (394)
T ss_dssp             HHHTTCHHHHHHHHHHHH-H-HHHHSCCCHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHH-h-hhccCCCCHHHHHHHHHHh
Confidence            999999999999999984 2 3444459999999999874

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.89  E-value=3.3e-08  Score=77.13  Aligned_cols=111  Identities=17%  Similarity=0.186  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHh
Q psy3489           4 LQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTA   83 (129)
Q Consensus         4 l~~fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~   83 (129)
                      ..++|+..+......+++.+|.++..+||++|++.|+|+...+++.+++..|...+   |   .....|+|..++++|..
T Consensus       114 a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~  187 (434)
T 4b4t_Q          114 QIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD---D---KPSLVDVHLLESKVYHK  187 (434)
T ss_dssp             HHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS---C---STHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc---c---chhHHHHHHHHHHHHHH
Confidence            34677888888888899999999999999999999999999999999999998443   2   24689999999999999


Q ss_pred             hhchHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHH
Q psy3489          84 QKNNKKLKKLYELIQVKSSEQNIMDDPFIREHIEDLLRN  122 (129)
Q Consensus        84 ~kn~kkLk~lY~~i~~~~n~~~~~~~PfI~~~I~e~~~~  122 (129)
                      .+|.++.+.+|+++. + ....+-.+|.+.+.+..++-.
T Consensus       188 ~~~~~~A~~~~~~al-~-~~~~~~~~~~~~~~~~~~~g~  224 (434)
T 4b4t_Q          188 LRNLAKSKASLTAAR-T-AANSIYCPTQTVAELDLMSGI  224 (434)
T ss_dssp             TTCHHHHHHHHHHHH-H-HHHHSCCCHHHHHHHHHHHHH
T ss_pred             hCcHHHHHHHHHHHH-H-HhhcCCCchHHHHHHHHHHHH
Confidence            999999999999985 3 233333445788877776644

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.63  E-value=1.7e-07  Score=78.96  Aligned_cols=108  Identities=9%  Similarity=0.133  Sum_probs=89.8

Q ss_pred             HHHHHHHHHhhCCcccchh-----hhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHH
Q psy3489           7 FYETTLEALKDAKNDRLWF-----KTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMY   81 (129)
Q Consensus         7 fYe~TL~aL~~~~NeRLWf-----KtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmy   81 (129)
                      ++..+++.+....+.|.|+     +...+||++|.+.|+|....+++.+|+..|.   |.+|   +...+|+|..|+++|
T Consensus       114 ~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~---~~~~---~~~kve~~l~q~rl~  187 (445)
T 4b4t_P          114 TRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETY---GSME---MSEKIQFILEQMELS  187 (445)
T ss_dssp             HHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC---SSSC---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH---hccc---HHHHHHHHHHHHHHH
Confidence            3445566666667788877     4459999999999999999999999999987   4333   568999999999999


Q ss_pred             HhhhchHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHH
Q psy3489          82 TAQKNNKKLKKLYELIQVKSSEQNIMDDPFIREHIEDLLRN  122 (129)
Q Consensus        82 t~~kn~kkLk~lY~~i~~~~n~~~~~~~PfI~~~I~e~~~~  122 (129)
                      .+.+|+.+.+.++.++..  +..++-++|.+.+.+.+++--
T Consensus       188 l~~~d~~~a~~~~~ki~~--~~~~~~~~~~lk~~~~~~~~~  226 (445)
T 4b4t_P          188 ILKGDYSQATVLSRKILK--KTFKNPKYESLKLEYYNLLVK  226 (445)
T ss_dssp             HHHTCHHHHHHHHHHHHH--HHHHSSCCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHH--hhcccCCcHHHHHHHHHHHHH
Confidence            999999999999999852  355678899999999888754

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.54  E-value=5e-07  Score=75.46  Aligned_cols=105  Identities=11%  Similarity=0.065  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHH
Q psy3489           3 LLQDFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYT   82 (129)
Q Consensus         3 ~l~~fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt   82 (129)
                      .+++|++.+.++.++..+|+.|.+++.++|+.|++.|+|+.+.+.+.+++..|..         +.+.+|++...|+++.
T Consensus       109 ~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~---------~~~kid~~l~~irl~l  179 (429)
T 4b4t_R          109 KIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS---------TGAKIDVMLTIARLGF  179 (429)
T ss_dssp             CHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC---------CCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHH
Confidence            4688999999998889999999999999999999999999999999999999972         2368999999999999


Q ss_pred             hhhchHHHHHHHHHHHhhhcccccCCChHHHHHHHHH
Q psy3489          83 AQKNNKKLKKLYELIQVKSSEQNIMDDPFIREHIEDL  119 (129)
Q Consensus        83 ~~kn~kkLk~lY~~i~~~~n~~~~~~~PfI~~~I~e~  119 (129)
                      ..+|+...+..+.++.   ....--.||.+++.+..+
T Consensus       180 ~~~d~~~~~~~~~ka~---~~~~~~~d~~~~~~lk~~  213 (429)
T 4b4t_R          180 FYNDQLYVKEKLEAVN---SMIEKGGDWERRNRYKTY  213 (429)
T ss_dssp             HHTCHHHHHHHHHHHH---HHHTTCCCTHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHH---HhhhcCCCHHHHHHHHHH
Confidence            9999999999999984   344456899999887654

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.86  E-value=3e-06  Score=70.59  Aligned_cols=74  Identities=15%  Similarity=0.198  Sum_probs=43.7

Q ss_pred             HhhCCcccchhhhhhhhHHHhhchhhhhHHHHH----HHH----------HHHhccCCCCC-ccccchhHHHHHHHHHHH
Q psy3489          15 LKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRI----LKQ----------LHQSCQTDDGE-DDLKKGTQLLEIYALEIQ   79 (129)
Q Consensus        15 L~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~----l~~----------L~~~c~~~dg~-dd~~kgt~lLEiyALEIQ   79 (129)
                      |++..|+|||+++++||.+++.+.+.++...++    |.+          ++-.|....+. |.....+++-++++..++
T Consensus        29 le~~~~~kLWhqlt~~L~~~~~~~~~~~~~~~ly~~fi~~f~~kin~L~lv~~~~~~~~~~~d~~~al~~L~~~~~~~~~  108 (393)
T 4b4t_O           29 FEKFYEEKLWFQLSESLTKFFDDAKSTPLRLRLYDNFVSKFYDKINQLSVVKYLLASLKDSKDFDESLKYLDDLKAQFQE  108 (393)
T ss_dssp             HHHHHCCSSCCSCCCTTHHHHCCCSSCCCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHTTCHHHHHHHHHHHTTTSHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhChhcchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Confidence            556669999999999999999987666554433    111          11111111122 333444555567777777


Q ss_pred             HHHhhhchH
Q psy3489          80 MYTAQKNNK   88 (129)
Q Consensus        80 myt~~kn~k   88 (129)
                      ++++..+++
T Consensus       109 ~~~~~~~~~  117 (393)
T 4b4t_O          109 LDSKKQRNN  117 (393)
T ss_dssp             HHSSCCCCC
T ss_pred             hhhhhhccc
Confidence            776655443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=90.77  E-value=2.7  Score=31.15  Aligned_cols=108  Identities=9%  Similarity=0.105  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHhhCCc-ccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhh
Q psy3489           6 DFYETTLEALKDAKN-DRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQ   84 (129)
Q Consensus         6 ~fYe~TL~aL~~~~N-eRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~   84 (129)
                      .+|+..++..+..++ ..+...+...+|.+|+..|+|++.-..+.+....+...   ++   ...+-++|-.--..|...
T Consensus       176 ~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~---~~---~~~~~~~~~~lg~~y~~~  249 (293)
T 2qfc_A          176 DLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI---NS---MALIGQLYYQRGECLRKL  249 (293)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TB---CSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc---Cc---HHHHHHHHHHHHHHHHHc
Confidence            345555544454433 34445788899999999999999998888877765311   11   113556777777788899


Q ss_pred             hchHHH-HHHHHHHHhhhcccccCCChHHHHHHHHHHHH
Q psy3489          85 KNNKKL-KKLYELIQVKSSEQNIMDDPFIREHIEDLLRN  122 (129)
Q Consensus        85 kn~kkL-k~lY~~i~~~~n~~~~~~~PfI~~~I~e~~~~  122 (129)
                      ++..+= ...|+++.   .......+|...+.|+.+...
T Consensus       250 g~~~~Ai~~~~~~Al---~~~~~~~~~~~~~~~~~~~~~  285 (293)
T 2qfc_A          250 EYEEAEIEDAYKKAS---FFFDILEMHAYKEALVNKISR  285 (293)
T ss_dssp             TCCHHHHHHHHHHHH---HHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHH---HHHHHhCcHhhHHHHHHHHHH
Confidence            888765 77788874   355667888888888777654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.19  E-value=3.5  Score=31.50  Aligned_cols=122  Identities=15%  Similarity=0.190  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHhhCC-cccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHH-------
Q psy3489           6 DFYETTLEALKDAK-NDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALE-------   77 (129)
Q Consensus         6 ~fYe~TL~aL~~~~-NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALE-------   77 (129)
                      .+|+..+....... +.+++-.....++.++...++|....+...+..+.....+..+....-.+.+-.+.+-       
T Consensus       196 ~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  275 (434)
T 4b4t_Q          196 ASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLI  275 (434)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccch
Confidence            44554444433333 4477788888899999999999998877666655443322222222111111111110       


Q ss_pred             ---HHHHHhh-----hc---hHHHHHH-----------HHHHHhhhcccccCCChHHHHHHHHHHHHHhhhhc
Q psy3489          78 ---IQMYTAQ-----KN---NKKLKKL-----------YELIQVKSSEQNIMDDPFIREHIEDLLRNIRTQVM  128 (129)
Q Consensus        78 ---IQmyt~~-----kn---~kkLk~l-----------Y~~i~~~~n~~~~~~~PfI~~~I~e~~~~~r~~~~  128 (129)
                         +......     .+   .+.+..+           |++++ .........||++..|+.++.+++|++.+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~l  347 (434)
T 4b4t_Q          276 DDVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTAL-KQYEKELMGDELTRSHFNALYDTLLESNL  347 (434)
T ss_dssp             HHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHHHTCHHHHHHHH-HHTHHHHTCSHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHhHHHHHHHHHHhcchhhhHHHHHHHHHHhhhHHHHHHHH-HHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence               1111100     01   1122222           34442 33567789999999999999999998764

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=87.97  E-value=1.1  Score=33.30  Aligned_cols=101  Identities=11%  Similarity=0.123  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHhhC-CcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhh
Q psy3489           6 DFYETTLEALKDA-KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQ   84 (129)
Q Consensus         6 ~fYe~TL~aL~~~-~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~   84 (129)
                      .+|+..++.++.. .+......+...+|.+|+..|+|.+....+.+..+.+...+.      ...+-++|-.-=..|...
T Consensus       176 ~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~------~~~~~~~~~~lg~~~~~~  249 (293)
T 3u3w_A          176 DLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS------MALIGQLYYQRGECLRKL  249 (293)
T ss_dssp             HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB------CTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc------HHHHHHHHHHHHHHHHHh
Confidence            4566666666655 577788889999999999999999999888887777652211      123556777667788888


Q ss_pred             hc-hHHHHHHHHHHHhhhcccccCCChHHHHH
Q psy3489          85 KN-NKKLKKLYELIQVKSSEQNIMDDPFIREH  115 (129)
Q Consensus        85 kn-~kkLk~lY~~i~~~~n~~~~~~~PfI~~~  115 (129)
                      ++ ..+=.+.|++++   .....+.++.....
T Consensus       250 g~~~~~A~~~~~~Al---~i~~~~~~~~~~~~  278 (293)
T 3u3w_A          250 EYEEAEIEDAYKKAS---FFFDILEMHAYKEA  278 (293)
T ss_dssp             TCCHHHHHHHHHHHH---HHHHHTTCTGGGGG
T ss_pred             CCcHHHHHHHHHHHH---HHHHHhCCHHHHHH
Confidence            85 477777788864   23334455544433

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=87.34  E-value=8.2  Score=29.46  Aligned_cols=100  Identities=14%  Similarity=0.043  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhh
Q psy3489           6 DFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQK   85 (129)
Q Consensus         6 ~fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~k   85 (129)
                      +.|+..++..+..++......+...+|.+|...|+|++....+.+....++..   .++    ....++..--..|...+
T Consensus       203 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~----~~~~~~~~la~~~~~~g  275 (378)
T 3q15_A          203 PHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VPD----LLPKVLFGLSWTLCKAG  275 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CGG----GHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CCh----hHHHHHHHHHHHHHHCC
Confidence            45666666666677777788888999999999999999998888777755411   111    23566666677899999


Q ss_pred             chHHHHHHHHHHHhhhcccccCCChHHHHH
Q psy3489          86 NNKKLKKLYELIQVKSSEQNIMDDPFIREH  115 (129)
Q Consensus        86 n~kkLk~lY~~i~~~~n~~~~~~~PfI~~~  115 (129)
                      +..+=.+.|++.+ .  ...-..+|.....
T Consensus       276 ~~~~A~~~~~~al-~--~~~~~~~~~~~~~  302 (378)
T 3q15_A          276 QTQKAFQFIEEGL-D--HITARSHKFYKEL  302 (378)
T ss_dssp             CHHHHHHHHHHHH-H--HCCTTCCSCHHHH
T ss_pred             CHHHHHHHHHHHH-H--HHHHcCCHHHHHH
Confidence            9999899999975 2  3334455554443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=86.90  E-value=4.1  Score=25.53  Aligned_cols=85  Identities=18%  Similarity=0.080  Sum_probs=47.7

Q ss_pred             HHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhc
Q psy3489           7 FYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKN   86 (129)
Q Consensus         7 fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn   86 (129)
                      +|+..++.....++......+...+|.++...++|+.....+.+....+...+.      ......++..--..|...++
T Consensus        71 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~~~la~~~~~~g~  144 (164)
T 3ro3_A           71 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD------RIGEGRACWSLGNAYTALGN  144 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc------hHhHHHHHHHHHHHHHHccC
Confidence            444444444444444444556666777777777777776666665555432111      12334445555556666777


Q ss_pred             hHHHHHHHHHH
Q psy3489          87 NKKLKKLYELI   97 (129)
Q Consensus        87 ~kkLk~lY~~i   97 (129)
                      ..+-.+.|++.
T Consensus       145 ~~~A~~~~~~a  155 (164)
T 3ro3_A          145 HDQAMHFAEKH  155 (164)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77666666665

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=86.83  E-value=7.3  Score=29.64  Aligned_cols=101  Identities=11%  Similarity=0.039  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhh
Q psy3489           6 DFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQK   85 (129)
Q Consensus         6 ~fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~k   85 (129)
                      +.|+..++..+..++.+....+...+|.+|...|+|++....+++..+.++.....      .....++..--..|...+
T Consensus       205 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~l~~~~~~~g  278 (383)
T 3ulq_A          205 SHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL------PSLPQAYFLITQIHYKLG  278 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG------GGHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc------hhHHHHHHHHHHHHHHCC
Confidence            45666666666777778888888999999999999999998888777765422110      123566667777888999


Q ss_pred             chHHHHHHHHHHHhhhcccccCCChHHHHH
Q psy3489          86 NNKKLKKLYELIQVKSSEQNIMDDPFIREH  115 (129)
Q Consensus        86 n~kkLk~lY~~i~~~~n~~~~~~~PfI~~~  115 (129)
                      +..+=.+.|++.+ .  ...-..||.....
T Consensus       279 ~~~~A~~~~~~al-~--~~~~~~~~~~~~~  305 (383)
T 3ulq_A          279 KIDKAHEYHSKGM-A--YSQKAGDVIYLSE  305 (383)
T ss_dssp             CHHHHHHHHHHHH-H--HHHHHTCHHHHHH
T ss_pred             CHHHHHHHHHHHH-H--HHHHcCCHHHHHH
Confidence            9998888888874 2  3333456665544

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=84.82  E-value=0.85  Score=38.28  Aligned_cols=34  Identities=15%  Similarity=0.367  Sum_probs=28.9

Q ss_pred             HHHHHhhhcccccCCChHHHHHHHHHHHHHhhhhc
Q psy3489          94 YELIQVKSSEQNIMDDPFIREHIEDLLRNIRTQVM  128 (129)
Q Consensus        94 Y~~i~~~~n~~~~~~~PfI~~~I~e~~~~~r~~~~  128 (129)
                      |.+++ ..+.+.++.|||+..|+..|.++||++.+
T Consensus       274 f~~iL-~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L  307 (394)
T 3txn_A          274 FQAAL-KEYKKELAEDVIVQAHLGTLYDTMLEQNL  307 (394)
T ss_dssp             HHHHH-HHSTTTTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            46664 44788899999999999999999999875

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.80  E-value=13  Score=30.52  Aligned_cols=29  Identities=14%  Similarity=0.383  Sum_probs=25.0

Q ss_pred             hhcccccCCChHHHHHHHHHHHHHhhhhc
Q psy3489         100 KSSEQNIMDDPFIREHIEDLLRNIRTQVM  128 (129)
Q Consensus       100 ~~n~~~~~~~PfI~~~I~e~~~~~r~~~~  128 (129)
                      .........|||+..|+.++.++||.+++
T Consensus       310 ~~~~~~l~~d~~l~~h~~~l~~~ir~~~l  338 (429)
T 4b4t_R          310 ETYANVLIPCKYLNRHADFFVREMRRKVY  338 (429)
T ss_dssp             HHHSTTTTTCTTSTTTHHHHHHHHHHHHH
T ss_pred             HHHHhhhccCHHHHHHHHHHHHHHHHHHH
Confidence            44566788999999999999999999875

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=83.78  E-value=9.5  Score=27.00  Aligned_cols=76  Identities=20%  Similarity=0.178  Sum_probs=57.9

Q ss_pred             CcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy3489          19 KNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQ   98 (129)
Q Consensus        19 ~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~   98 (129)
                      ++..........+|.++...|+|+.....+++....+....+.+++    ....++..-..+|...++..+-.+.|++..
T Consensus       147 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al  222 (311)
T 3nf1_A          147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP----NVAKTKNNLASCYLKQGKFKQAETLYKEIL  222 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCH----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4445566777889999999999999999998888876644333322    345667777788999999998888888874

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=83.31  E-value=9.8  Score=26.82  Aligned_cols=85  Identities=19%  Similarity=0.092  Sum_probs=42.4

Q ss_pred             HHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhc
Q psy3489           7 FYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKN   86 (129)
Q Consensus         7 fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn   86 (129)
                      +|+..++.....++......+...+|.+|+..|+|++....+++........      ........++..--..|...++
T Consensus       245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~~la~~~~~~g~  318 (338)
T 3ro2_A          245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL------KDRIGEGRACWSLGNAYTALGN  318 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc------CCcHHHHHHHHHHHHHHHHcCC
Confidence            3333444333444444444555556666666666666665555544443210      0012233444445556666666


Q ss_pred             hHHHHHHHHHH
Q psy3489          87 NKKLKKLYELI   97 (129)
Q Consensus        87 ~kkLk~lY~~i   97 (129)
                      ..+=.+.|++.
T Consensus       319 ~~~A~~~~~~a  329 (338)
T 3ro2_A          319 HDQAMHFAEKH  329 (338)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            66666666665

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=82.85  E-value=10  Score=26.71  Aligned_cols=86  Identities=15%  Similarity=0.020  Sum_probs=56.2

Q ss_pred             HHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhc
Q psy3489           7 FYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKN   86 (129)
Q Consensus         7 fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn   86 (129)
                      .|+..++.....++......+...+|.+++..|+|+.....+.+....+...+   +   .....+++..-..+|...++
T Consensus       205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~~la~~~~~~g~  278 (338)
T 3ro2_A          205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK---D---RAVEAQSCYSLGNTYTLLQD  278 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc---c---hhHHHHHHHHHHHHHHHhcC
Confidence            34444444444444455555777788888888888888877777666554211   1   22445666666778888888


Q ss_pred             hHHHHHHHHHHH
Q psy3489          87 NKKLKKLYELIQ   98 (129)
Q Consensus        87 ~kkLk~lY~~i~   98 (129)
                      ..+=...|++.+
T Consensus       279 ~~~A~~~~~~a~  290 (338)
T 3ro2_A          279 YEKAIDYHLKHL  290 (338)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888888764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=81.20  E-value=11  Score=26.02  Aligned_cols=74  Identities=16%  Similarity=0.109  Sum_probs=56.0

Q ss_pred             ccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy3489          21 DRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQ   98 (129)
Q Consensus        21 eRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~   98 (129)
                      ......+...+|.+++..|+|++....+.+..+.+....+.+++    ....++..--..|...++..+=.+.|+++.
T Consensus       123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  196 (283)
T 3edt_B          123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP----NVAKTKNNLASCYLKQGKYQDAETLYKEIL  196 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35556778889999999999999999888887776533333322    355666667788999999998888888874

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=80.75  E-value=15  Score=27.51  Aligned_cols=87  Identities=14%  Similarity=0.017  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhh
Q psy3489           6 DFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQK   85 (129)
Q Consensus         6 ~fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~k   85 (129)
                      +.|+..++.....++......+...+|.+|...|+|++....+++....+...+      ......+++..-...|...+
T Consensus       284 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~la~~~~~~g  357 (411)
T 4a1s_A          284 EHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG------DRIGEARACWSLGNAHSAIG  357 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC------ChHHHHHHHHHHHHHHHHhc
Confidence            345555555555555555566777888888888888888877777666554111      12244556666677888888


Q ss_pred             chHHHHHHHHHHH
Q psy3489          86 NNKKLKKLYELIQ   98 (129)
Q Consensus        86 n~kkLk~lY~~i~   98 (129)
                      +..+=.+.|++.+
T Consensus       358 ~~~~A~~~~~~al  370 (411)
T 4a1s_A          358 GHERALKYAEQHL  370 (411)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            8888788888864

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=80.26  E-value=15  Score=27.02  Aligned_cols=87  Identities=17%  Similarity=0.089  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhh
Q psy3489           6 DFYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQK   85 (129)
Q Consensus         6 ~fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~k   85 (129)
                      ..|+..++.....++......+...+|.+|+..|+|++....+.+........+.      ......++..--..|...+
T Consensus       248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~~~la~~~~~~g  321 (406)
T 3sf4_A          248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND------RIGEGRACWSLGNAYTALG  321 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC------cHHHHHHHHHHHHHHHHcC
Confidence            3445555555555555555666777888888888888777777666555432111      1233455555666777888


Q ss_pred             chHHHHHHHHHHH
Q psy3489          86 NNKKLKKLYELIQ   98 (129)
Q Consensus        86 n~kkLk~lY~~i~   98 (129)
                      +..+=.+.|++.+
T Consensus       322 ~~~~A~~~~~~al  334 (406)
T 3sf4_A          322 NHDQAMHFAEKHL  334 (406)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            8888778888864

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=80.13  E-value=8.7  Score=31.67  Aligned_cols=99  Identities=11%  Similarity=-0.027  Sum_probs=67.1

Q ss_pred             chhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhchHHHHHHHHHHHhhhc
Q psy3489          23 LWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKKLYELIQVKSS  102 (129)
Q Consensus        23 LWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn~kkLk~lY~~i~~~~n  102 (129)
                      -...+--.||.+|.++|+|++....-++..+-...--|.+.+.-|+.+..+-.    .|..+++...=..+|++++.-..
T Consensus       327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~----~~~~~g~~~eA~~~~~~Al~i~~  402 (429)
T 3qwp_A          327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK----LQLHQGMFPQAMKNLRLAFDIMR  402 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH----HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHHHH
Confidence            34566777999999999999999887766655544457777777777666543    57778888888888888641111


Q ss_pred             ccccCCChHHHHH---HHHHHHHHhh
Q psy3489         103 EQNIMDDPFIREH---IEDLLRNIRT  125 (129)
Q Consensus       103 ~~~~~~~PfI~~~---I~e~~~~~r~  125 (129)
                      ..-=-+||.+++.   ++++...||.
T Consensus       403 ~~lG~~Hp~~~~~~~~l~~~~~e~~~  428 (429)
T 3qwp_A          403 VTHGREHSLIEDLILLLEECDANIRA  428 (429)
T ss_dssp             HHTCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             HhcCCCChHHHHHHHHHHHHHHHHhc
Confidence            1111479999875   4444444443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=80.02  E-value=16  Score=26.98  Aligned_cols=86  Identities=13%  Similarity=0.059  Sum_probs=61.4

Q ss_pred             HHHHHHHHHhhCCcccchhhhhhhhHHHhhchhhhhHHHHHHHHHHHhccCCCCCccccchhHHHHHHHHHHHHHHhhhc
Q psy3489           7 FYETTLEALKDAKNDRLWFKTNTKLGKLYFDREDFNKLSRILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKN   86 (129)
Q Consensus         7 fYe~TL~aL~~~~NeRLWfKtnlKLakL~ld~~ey~~l~~~l~~L~~~c~~~dg~dd~~kgt~lLEiyALEIQmyt~~kn   86 (129)
                      +|+..++.....++......+...+|.++...|+|+.....+++..+.+...+.      ......++..--..|...++
T Consensus       169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~la~~~~~~g~  242 (406)
T 3sf4_A          169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD------KAAERRAYSNLGNAYIFLGE  242 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC------cHHHHHHHHHHHHHHHHcCC
Confidence            444445545555556666778888999999999999999888887776653211      12345566667778888999


Q ss_pred             hHHHHHHHHHHH
Q psy3489          87 NKKLKKLYELIQ   98 (129)
Q Consensus        87 ~kkLk~lY~~i~   98 (129)
                      ..+-.+.|++++
T Consensus       243 ~~~A~~~~~~al  254 (406)
T 3sf4_A          243 FETASEYYKKTL  254 (406)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence            998888888864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00