Psyllid ID: psy3500

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MYHCKTCSTLSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSHG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHcccccccccccccHHHHHccccHHHHHHHcccccccccccHHHHHHcccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccEcccccccEEccccccEEccHHHHHHHHHHHHccccEEccccccEEccHHHHHHHHHHHHccccEEccccccEEccHHHHHHHHHHHc
Coil and Loop (DISEMBL)
myhcktcstlsrpnisykytcyacDYHTLMSEDMKKHmrkhtgekpykceycaysctqssaLKIHErkhtgdkpyicqqcRDTFSSLYLFRNHLQSHG
Flexible Loop (DISEMBL)
myhcktcstlsrpnisyKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSHG
Low Complexity Region (SEG)
MYHCKTCSTLSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSHG
Disordered region (IsUnstruct)
***CKTCSTLSRPNISYKYTCYACDYHTLMS************EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRN******
Disordered Region (DISOPRED)
MYHCKTCSTLSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQ***
Disordered Region (DISEMBL)
MYHCKTCSTLSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSHG
Disordered Region (DISPRO)
MYHCKTCSTLSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQ***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYHCKTCSTLSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSHG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
Q9QZ48	569	Zinc finger and BTB domai	yes	N/A	0.755	0.130	0.441	1e-16
O88939	569	Zinc finger and BTB domai	yes	N/A	0.785	0.135	0.441	1e-16
O95365	584	Zinc finger and BTB domai	yes	N/A	0.755	0.126	0.441	2e-16
O93567	546	Zinc finger and BTB domai	yes	N/A	0.622	0.111	0.5	5e-16
Q5R5U3	672	Zinc finger protein 271 O	yes	N/A	0.632	0.092	0.567	4e-15
Q13360	481	Zinc finger protein 177 O	no	N/A	0.806	0.164	0.443	7e-15
Q14591	655	Zinc finger protein 271 O	no	N/A	0.632	0.094	0.552	9e-15
A1YPR0	619	Zinc finger and BTB domai	no	N/A	0.744	0.117	0.428	2e-14
Q8VCZ7	619	Zinc finger and BTB domai	no	N/A	0.744	0.117	0.428	2e-14
P15620	580	Zinc finger protein 271 O	no	N/A	0.683	0.115	0.481	5e-14

>sp|Q9QZ48|ZBT7A_RAT Zinc finger and BTB domain-containing protein 7A OS=Rattus norvegicus GN=Zbtb7a PE=2 SV=1

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 48/77 (62%)

Query: 21  CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 80
           C  C+     +  + +H+R HTGEKPY+C  C    T+   LK+H RKHTG+KPY+CQQC
Sbjct: 378 CPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQC 437

Query: 81  RDTFSSLYLFRNHLQSH 97
              F+  Y  +NH++ H
Sbjct: 438 GAAFAHNYDLKNHMRVH 454

Plays a key role in the instruction of early lymphoid progenitors to develop into B lineage by repressing T-cell instructive Notch signals (By similarity). Specifically represses the transcription of the CDKN2A gene. Efficiently abrogates E2F1-dependent CDKN2A transactivation/de-repression. Binds to the consensus sequence 5'-[GA][CA]GACCCCCCCCC-3'.
Rattus norvegicus (taxid: 10116)

>sp|O88939|ZBT7A_MOUSE Zinc finger and BTB domain-containing protein 7A OS=Mus musculus GN=Zbtb7a PE=1 SV=2

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 48/77 (62%)

Query: 21  CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 80
           C  C+     +  + +H+R HTGEKPY+C  C    T+   LK+H RKHTG+KPY+CQQC
Sbjct: 378 CPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQC 437

Query: 81  RDTFSSLYLFRNHLQSH 97
              F+  Y  +NH++ H
Sbjct: 438 GAAFAHNYDLKNHMRVH 454

Plays a key role in the instruction of early lymphoid progenitors to develop into B lineage by repressing T-cell instructive Notch signals. Specifically represses the transcription of the CDKN2A gene. Efficiently abrogates E2F1-dependent CDKN2A transactivation/de-repression. Binds to the consensus sequence 5'-[GA][CA]GACCCCCCCCC-3'.

Mus musculus (taxid: 10090)

>sp|O95365|ZBT7A_HUMAN Zinc finger and BTB domain-containing protein 7A OS=Homo sapiens GN=ZBTB7A PE=1 SV=1

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 48/77 (62%)

Query: 21  CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 80
           C  C+     +  + +H+R HTGEKPY+C  C    T+   LK+H RKHTG+KPY+CQQC
Sbjct: 384 CPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQC 443

Query: 81  RDTFSSLYLFRNHLQSH 97
              F+  Y  +NH++ H
Sbjct: 444 GAAFAHNYDLKNHMRVH 460

Plays a key role in the instruction of early lymphoid progenitors to develop into B lineage by repressing T-cell instructive Notch signals (By similarity). Specifically represses the transcription of the CDKN2A gene. Efficiently abrogates E2F1-dependent CDKN2A transactivation/de-repression. Binds to the consensus sequence 5'-[GA][CA]GACCCCCCCCC-3'.

Homo sapiens (taxid: 9606)

>sp|O93567|ZBT7A_CHICK Zinc finger and BTB domain-containing protein 7A OS=Gallus gallus GN=ZBTB7A PE=2 SV=1

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 44/64 (68%)

Query: 34  MKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNH 93
           + +H+R HTGEKPY+C  C    T+   LK+H RKHTG+KPY+CQQC   F+  Y  +NH
Sbjct: 374 LPRHIRTHTGEKPYECNICNVRFTRQDKLKVHMRKHTGEKPYLCQQCGAAFAHNYDLKNH 433

Query: 94  LQSH 97
           ++ H
Sbjct: 434 MRVH 437

May be involved in transcriptional regulation.

Gallus gallus (taxid: 9031)

>sp|Q5R5U3|ZN271_PONAB Zinc finger protein 271 OS=Pongo abelii GN=ZNF271 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 47/67 (70%)

Query: 19  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
           YTC  C+ H   S D+ KH R HTGEKPYKC+ CA + +QSS L +H+R HTG+KPY C 
Sbjct: 219 YTCNQCNKHFSQSSDVIKHQRIHTGEKPYKCDVCAKAFSQSSDLILHQRIHTGEKPYPCN 278

Query: 79  QCRDTFS 85
           QC  +FS
Sbjct: 279 QCSKSFS 285

May be involved in transcriptional regulation.

Pongo abelii (taxid: 9601)

>sp|Q13360|ZN177_HUMAN Zinc finger protein 177 OS=Homo sapiens GN=ZNF177 PE=2 SV=4

 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 51/79 (64%)

Query: 19  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
           Y C  C    +    +KKHMR HTGEKPY+C++C  S +QSS L +H+R HTG+KPY C+
Sbjct: 284 YECSDCGKAFIFQSSLKKHMRSHTGEKPYECDHCGKSFSQSSHLNVHKRTHTGEKPYDCK 343

Query: 79  QCRDTFSSLYLFRNHLQSH 97
           +C   F+     + H+++H
Sbjct: 344 ECGKAFTVPSSLQKHVRTH 362

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q14591|ZN271_HUMAN Zinc finger protein 271 OS=Homo sapiens GN=ZNF271 PE=2 SV=4

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 46/67 (68%)

Query: 19  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
           YTC  C+ H   S D+ KH R HTGEKPYKC+ C  + +QSS L +H+R HTG+KPY C 
Sbjct: 202 YTCNQCNKHFSQSSDVIKHQRIHTGEKPYKCDVCGKAFSQSSDLILHQRIHTGEKPYPCN 261

Query: 79  QCRDTFS 85
           QC  +FS
Sbjct: 262 QCSKSFS 268

May be involved in transcriptional regulation. Plays a role in the EBV-mediated transformation process.

Homo sapiens (taxid: 9606)

>sp|A1YPR0|ZBT7C_HUMAN Zinc finger and BTB domain-containing protein 7C OS=Homo sapiens GN=ZBTB7C PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 44/77 (57%)

Query: 21  CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 80
           C  C    + +  + +HMR HTGEKPY C  C    T+   LKIH RKHTG++PY+C  C
Sbjct: 366 CPICHKVIMGAGKLPRHMRTHTGEKPYMCTICEVRFTRQDKLKIHMRKHTGERPYLCIHC 425

Query: 81  RDTFSSLYLFRNHLQSH 97
              F   Y  +NH++ H
Sbjct: 426 NAKFVHNYDLKNHMRIH 442

May be a tumor suppressor gene.

Homo sapiens (taxid: 9606)

>sp|Q8VCZ7|ZBT7C_MOUSE Zinc finger and BTB domain-containing protein 7C OS=Mus musculus GN=Zbtb7c PE=2 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 44/77 (57%)

Query: 21  CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 80
           C  C    + +  + +HMR HTGEKPY C  C    T+   LKIH RKHTG++PY+C  C
Sbjct: 366 CPICHKVIMGAGKLPRHMRTHTGEKPYMCSICEVRFTRQDKLKIHMRKHTGERPYLCIHC 425

Query: 81  RDTFSSLYLFRNHLQSH 97
              F   Y  +NH++ H
Sbjct: 426 NAKFVHNYDLKNHMRIH 442

May be a tumor suppressor gene.

Mus musculus (taxid: 10090)

>sp|P15620|ZN271_MOUSE Zinc finger protein 271 OS=Mus musculus GN=Znf271 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 47/79 (59%)

Query: 19  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
           Y C  C+     + D+ KH R HTGEKPYKC  C  +  QSS L +H+R HTG+KPY C 
Sbjct: 272 YPCAQCNKSFSQNSDLIKHRRIHTGEKPYKCSECGKAFNQSSVLILHQRIHTGEKPYPCN 331

Query: 79  QCRDTFSSLYLFRNHLQSH 97
           QC  +FS L    NH + H
Sbjct: 332 QCTKSFSRLSDLINHQRIH 350

May act to control gene activity during the pachytene stage of meiotic prophase. May function as a transcription activator.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
16758916	569	zinc finger and BTB domain-containing pr	0.755	0.130	0.441	4e-15
149034453	569	zinc finger and BTB domain containing 7a	0.755	0.130	0.441	4e-15
354488737	643	PREDICTED: zinc finger and BTB domain-co	0.744	0.113	0.441	4e-15
3599511	565	leukemia/lymphoma related factor LRF [Mu	0.785	0.136	0.441	5e-15
117647238	569	zinc finger and BTB domain-containing pr	0.785	0.135	0.441	5e-15
74191949	569	unnamed protein product [Mus musculus]	0.785	0.135	0.441	5e-15
402903754	584	PREDICTED: zinc finger and BTB domain-co	0.755	0.126	0.441	6e-15
219521730	569	Zbtb7a protein [Mus musculus]	0.785	0.135	0.441	6e-15
297275807	584	PREDICTED: LOW QUALITY PROTEIN: zinc fin	0.755	0.126	0.441	6e-15
7705375	584	zinc finger and BTB domain-containing pr	0.755	0.126	0.441	6e-15

>gi|16758916|ref|NP_446454.1| zinc finger and BTB domain-containing protein 7A [Rattus norvegicus] gi|46397077|sp|Q9QZ48.1|ZBT7A_RAT RecName: Full=Zinc finger and BTB domain-containing protein 7A; AltName: Full=Leukemia/lymphoma-related factor; AltName: Full=Osteoclast-derived zinc finger protein gi|6329066|dbj|BAA86393.1| osteoclast-derived zinc finger (OCZF) protein [Rattus norvegicus]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 48/77 (62%)

Query: 21  CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 80
           C  C+     +  + +H+R HTGEKPY+C  C    T+   LK+H RKHTG+KPY+CQQC
Sbjct: 378 CPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQC 437

Query: 81  RDTFSSLYLFRNHLQSH 97
              F+  Y  +NH++ H
Sbjct: 438 GAAFAHNYDLKNHMRVH 454

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149034453|gb|EDL89190.1| zinc finger and BTB domain containing 7a [Rattus norvegicus]

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 48/77 (62%)

Query: 21  CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 80
           C  C+     +  + +H+R HTGEKPY+C  C    T+   LK+H RKHTG+KPY+CQQC
Sbjct: 378 CPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQC 437

Query: 81  RDTFSSLYLFRNHLQSH 97
              F+  Y  +NH++ H
Sbjct: 438 GAAFAHNYDLKNHMRVH 454

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|354488737|ref|XP_003506523.1| PREDICTED: zinc finger and BTB domain-containing protein 7A-like [Cricetulus griseus]

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 48/77 (62%)

Query: 21  CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 80
           C  C+     +  + +H+R HTGEKPY+C  C    T+   LK+H RKHTG+KPY+CQQC
Sbjct: 376 CPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQC 435

Query: 81  RDTFSSLYLFRNHLQSH 97
              F+  Y  +NH++ H
Sbjct: 436 GAAFAHNYDLKNHMRVH 452

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|3599511|gb|AAC35367.1| leukemia/lymphoma related factor LRF [Mus musculus]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 48/77 (62%)

Query: 21  CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 80
           C  C+     +  + +H+R HTGEKPY+C  C    T+   LK+H RKHTG+KPY+CQQC
Sbjct: 378 CPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQC 437

Query: 81  RDTFSSLYLFRNHLQSH 97
              F+  Y  +NH++ H
Sbjct: 438 GAAFAHNYDLKNHMRVH 454

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|117647238|ref|NP_034861.3| zinc finger and BTB domain-containing protein 7A [Mus musculus] gi|205371830|sp|O88939.2|ZBT7A_MOUSE RecName: Full=Zinc finger and BTB domain-containing protein 7A; AltName: Full=Leukemia/lymphoma-related factor; AltName: Full=POZ and Krueppel erythroid myeloid ontogenic factor; Short=POK erythroid myeloid ontogenic factor; Short=Pokemon gi|148699508|gb|EDL31455.1| mCG12141 [Mus musculus] gi|187952921|gb|AAI38525.1| Zbtb7a protein [Mus musculus] gi|219518614|gb|AAI45312.1| Zinc finger and BTB domain containing 7a [Mus musculus]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 48/77 (62%)

Query: 21  CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 80
           C  C+     +  + +H+R HTGEKPY+C  C    T+   LK+H RKHTG+KPY+CQQC
Sbjct: 378 CPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQC 437

Query: 81  RDTFSSLYLFRNHLQSH 97
              F+  Y  +NH++ H
Sbjct: 438 GAAFAHNYDLKNHMRVH 454

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|74191949|dbj|BAE32917.1| unnamed protein product [Mus musculus]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 48/77 (62%)

Query: 21  CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 80
           C  C+     +  + +H+R HTGEKPY+C  C    T+   LK+H RKHTG+KPY+CQQC
Sbjct: 378 CPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQC 437

Query: 81  RDTFSSLYLFRNHLQSH 97
              F+  Y  +NH++ H
Sbjct: 438 GAAFAHNYDLKNHMRVH 454

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|402903754|ref|XP_003914723.1| PREDICTED: zinc finger and BTB domain-containing protein 7A isoform 1 [Papio anubis] gi|402903756|ref|XP_003914724.1| PREDICTED: zinc finger and BTB domain-containing protein 7A isoform 2 [Papio anubis] gi|387539686|gb|AFJ70470.1| zinc finger and BTB domain-containing protein 7A [Macaca mulatta]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 48/77 (62%)

Query: 21  CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 80
           C  C+     +  + +H+R HTGEKPY+C  C    T+   LK+H RKHTG+KPY+CQQC
Sbjct: 384 CPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQC 443

Query: 81  RDTFSSLYLFRNHLQSH 97
              F+  Y  +NH++ H
Sbjct: 444 GAAFAHNYDLKNHMRVH 460

Source: Papio anubis

Species: Papio anubis

Genus: Papio

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|219521730|gb|AAI71957.1| Zbtb7a protein [Mus musculus]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 48/77 (62%)

Query: 21  CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 80
           C  C+     +  + +H+R HTGEKPY+C  C    T+   LK+H RKHTG+KPY+CQQC
Sbjct: 378 CPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQC 437

Query: 81  RDTFSSLYLFRNHLQSH 97
              F+  Y  +NH++ H
Sbjct: 438 GAAFAHNYDLKNHMRVH 454

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|297275807|ref|XP_002808211.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger and BTB domain-containing protein 7A-like [Macaca mulatta]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 48/77 (62%)

Query: 21  CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 80
           C  C+     +  + +H+R HTGEKPY+C  C    T+   LK+H RKHTG+KPY+CQQC
Sbjct: 384 CPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQC 443

Query: 81  RDTFSSLYLFRNHLQSH 97
              F+  Y  +NH++ H
Sbjct: 444 GAAFAHNYDLKNHMRVH 460

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|7705375|ref|NP_056982.1| zinc finger and BTB domain-containing protein 7A [Homo sapiens] gi|114674703|ref|XP_524058.2| PREDICTED: zinc finger and BTB domain-containing protein 7A [Pan troglodytes] gi|46397100|sp|O95365.1|ZBT7A_HUMAN RecName: Full=Zinc finger and BTB domain-containing protein 7A; AltName: Full=Factor binding IST protein 1; Short=FBI-1; AltName: Full=Factor that binds to inducer of short transcripts protein 1; AltName: Full=HIV-1 1st-binding protein 1; AltName: Full=Leukemia/lymphoma-related factor; AltName: Full=POZ and Krueppel erythroid myeloid ontogenic factor; Short=POK erythroid myeloid ontogenic factor; Short=Pokemon; AltName: Full=TTF-I-interacting peptide 21; Short=TIP21; AltName: Full=Zinc finger protein 857A gi|3860089|gb|AAC72973.1| HIV-1 inducer of short transcripts binding protein [Homo sapiens] gi|109731291|gb|AAI13512.1| Zinc finger and BTB domain containing 7A [Homo sapiens] gi|119589673|gb|EAW69267.1| zinc finger and BTB domain containing 7A, isoform CRA_b [Homo sapiens] gi|119589674|gb|EAW69268.1| zinc finger and BTB domain containing 7A, isoform CRA_b [Homo sapiens] gi|119589676|gb|EAW69270.1| zinc finger and BTB domain containing 7A, isoform CRA_b [Homo sapiens] gi|119589677|gb|EAW69271.1| zinc finger and BTB domain containing 7A, isoform CRA_b [Homo sapiens] gi|119589678|gb|EAW69272.1| zinc finger and BTB domain containing 7A, isoform CRA_b [Homo sapiens] gi|307686181|dbj|BAJ21021.1| zinc finger and BTB domain containing 7A [synthetic construct] gi|410214634|gb|JAA04536.1| zinc finger and BTB domain containing 7A [Pan troglodytes] gi|410248790|gb|JAA12362.1| zinc finger and BTB domain containing 7A [Pan troglodytes] gi|410340211|gb|JAA39052.1| zinc finger and BTB domain containing 7A [Pan troglodytes]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 48/77 (62%)

Query: 21  CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 80
           C  C+     +  + +H+R HTGEKPY+C  C    T+   LK+H RKHTG+KPY+CQQC
Sbjct: 384 CPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQC 443

Query: 81  RDTFSSLYLFRNHLQSH 97
              F+  Y  +NH++ H
Sbjct: 444 GAAFAHNYDLKNHMRVH 460

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
UNIPROTKB|G3MXV1	319	ZNF705A "Uncharacterized prote	0.928	0.285	0.431	2.2e-18
ZFIN|ZDB-GENE-050913-150	188	zgc:113372 "zgc:113372" [Danio	0.816	0.425	0.5	4.6e-18
FB|FBgn0037620	346	ranshi "ranshi" [Drosophila me	0.816	0.231	0.375	6.3e-18
UNIPROTKB|I3LIN9	330	LOC100738023 "Uncharacterized	0.928	0.275	0.421	7.8e-18
ZFIN|ZDB-GENE-050913-91	309	zgc:113886 "zgc:113886" [Danio	0.806	0.255	0.468	9.5e-18
UNIPROTKB|J9P9K0	322	ZNF705A "Uncharacterized prote	0.928	0.282	0.410	2.6e-17
UNIPROTKB|F1RVK5	510	F1RVK5 "Uncharacterized protei	0.928	0.178	0.421	4.8e-17
ZFIN|ZDB-GENE-071004-118	281	zgc:174224 "zgc:174224" [Danio	0.816	0.284	0.45	5.3e-17
ZFIN|ZDB-GENE-080218-13	260	zgc:175008 "zgc:175008" [Danio	0.806	0.303	0.455	5.3e-17
UNIPROTKB|Q13360	481	ZNF177 "Zinc finger protein 17	0.806	0.164	0.443	5.4e-17

UNIPROTKB|G3MXV1 ZNF705A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 41/95 (43%), Positives = 57/95 (60%)

Query:     7 CSTLSRPNISYK----YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSAL 62
             CS+L R  +++     Y C+ C    + S D++KH   HTGEKPY+C  C  + +QSS L
Sbjct:   181 CSSLRRHEMTHTGEKPYECHICGNAFIQSSDLRKHNLTHTGEKPYECHLCGKAFSQSSNL 240

Query:    63 KIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
             + HER HTG++PY CQ C  TFS     R H ++H
Sbjct:   241 RQHERTHTGEQPYECQLCGKTFSKCSALRRHERTH 275

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-050913-150 zgc:113372 "zgc:113372" [Danio rerio (taxid:7955)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 40/80 (50%), Positives = 48/80 (60%)

Query:    18 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
             KYTC  C       +++K+H R HTGEKPYKC +C  S TQ   LK HER HTG+KPY C
Sbjct:   102 KYTCSHCGKAFTQVQNLKRHERIHTGEKPYKCSHCDKSFTQLPNLKCHERIHTGEKPYRC 161

Query:    78 QQCRDTFSSLYLFRNHLQSH 97
             QQC   F+ L   + H   H
Sbjct:   162 QQCLKRFTQLSQLKKHTNMH 181

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

FB|FBgn0037620 ranshi "ranshi" [Drosophila melanogaster (taxid:7227)]

 Score = 206 (77.6 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
 Identities = 30/80 (37%), Positives = 53/80 (66%)

Query:    18 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
             ++ C  C+       ++K+H+RKHTGEKP+KC +C+ S +  S    HER HT ++P++C
Sbjct:   223 EFGCEFCEDRFCTPAELKRHIRKHTGEKPFKCRHCSRSFSDYSTRLKHERTHTNERPFVC 282

Query:    78 QQCRDTFSSLYLFRNHLQSH 97
             ++C + F++ Y+ +NH+  H
Sbjct:   283 KECNNAFTTSYILKNHMLVH 302

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0035145 "exon-exon junction complex" evidence=IPI

GO:0009994 "oocyte differentiation" evidence=IMP

GO:0030706 "germarium-derived oocyte differentiation" evidence=IMP

UNIPROTKB|I3LIN9 LOC100738023 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 217 (81.4 bits), Expect = 7.8e-18, P = 7.8e-18
 Identities = 40/95 (42%), Positives = 56/95 (58%)

Query:     7 CSTLSRPNISYK----YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSAL 62
             CS+L R  +++     Y C+ C    + S D++KH   HTGEKPY+C  C  + +QSS L
Sbjct:   192 CSSLRRHEMTHTGEKPYECHICGNAFIQSSDLRKHNLTHTGEKPYECHLCGKAFSQSSNL 251

Query:    63 KIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
             + HER HTG++PY CQ C   FS     R H ++H
Sbjct:   252 RQHERTHTGEQPYECQLCGKAFSKCSALRRHERTH 286

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-050913-91 zgc:113886 "zgc:113886" [Danio rerio (taxid:7955)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 37/79 (46%), Positives = 47/79 (59%)

Query:    19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
             Y C  CD     +  +K H R HTGEKPYKC +C    +QS  +K HER HTG+KPY C 
Sbjct:   224 YKCSHCDKRFSQTGHLKTHERIHTGEKPYKCSHCDKRFSQSGDMKTHERNHTGEKPYTCD 283

Query:    79 QCRDTFSSLYLFRNHLQSH 97
             QC  +FS L   + H++ H
Sbjct:   284 QCLKSFSQLITLKKHMKIH 302

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|J9P9K0 ZNF705A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 212 (79.7 bits), Expect = 2.6e-17, P = 2.6e-17
 Identities = 39/95 (41%), Positives = 55/95 (57%)

Query:     7 CSTLSRPNISYK----YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSAL 62
             CS+L R  +++     Y C+ C    + S D++KH   HTGEKPY+C  C  + +QSS L
Sbjct:   184 CSSLRRHEMTHTGEKPYECHICGNAFIQSSDLRKHNLTHTGEKPYECHLCGKAFSQSSNL 243

Query:    63 KIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
             + HER HTG++PY C  C   FS     R H ++H
Sbjct:   244 RQHERTHTGEQPYECHLCGKAFSKCSALRRHERTH 278

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1RVK5 F1RVK5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 217 (81.4 bits), Expect = 4.8e-17, P = 4.8e-17
 Identities = 40/95 (42%), Positives = 56/95 (58%)

Query:     7 CSTLSRPNISYK----YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSAL 62
             CS+L R  +++     Y C+ C    + S D++KH   HTGEKPY+C  C  + +QSS L
Sbjct:   183 CSSLRRHEMTHTGEKPYECHICGNAFIQSSDLRKHNLTHTGEKPYECHLCGKAFSQSSNL 242

Query:    63 KIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
             + HER HTG++PY CQ C   FS     R H ++H
Sbjct:   243 RQHERTHTGEQPYECQLCGKAFSKCSALRRHERTH 277

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-071004-118 zgc:174224 "zgc:174224" [Danio rerio (taxid:7955)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 36/80 (45%), Positives = 49/80 (61%)

Query:    18 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
             ++ C+ C    + +E +K+H R HTGEKPYKC +C  +  Q   LKIHER HTG+KPY C
Sbjct:   165 EHVCFECGKSFVTAEHLKQHQRIHTGEKPYKCSHCDKAFNQLIHLKIHERTHTGEKPYKC 224

Query:    78 QQCRDTFSSLYLFRNHLQSH 97
               C  TFS     + H ++H
Sbjct:   225 SHCGKTFSQSPTLKAHSRTH 244

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-080218-13 zgc:175008 "zgc:175008" [Danio rerio (taxid:7955)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 36/79 (45%), Positives = 48/79 (60%)

Query:    19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
             YTC  C       + +K HMR HTGEKP+ C+ C  S +Q   L IH R HTG+KPY C+
Sbjct:   110 YTCEQCGQSFSQKQCLKTHMRIHTGEKPFSCKQCGKSFSQKPNLDIHMRVHTGEKPYTCE 169

Query:    79 QCRDTFSSLYLFRNHLQSH 97
             QC  +FS    F++H++ H
Sbjct:   170 QCGKSFSQKQSFKSHMRIH 188

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q13360 ZNF177 "Zinc finger protein 177" [Homo sapiens (taxid:9606)]

 Score = 216 (81.1 bits), Expect = 5.4e-17, P = 5.4e-17
 Identities = 35/79 (44%), Positives = 51/79 (64%)

Query:    19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
             Y C  C    +    +KKHMR HTGEKPY+C++C  S +QSS L +H+R HTG+KPY C+
Sbjct:   284 YECSDCGKAFIFQSSLKKHMRSHTGEKPYECDHCGKSFSQSSHLNVHKRTHTGEKPYDCK 343

Query:    79 QCRDTFSSLYLFRNHLQSH 97
             +C   F+     + H+++H
Sbjct:   344 ECGKAFTVPSSLQKHVRTH 362

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R5U3	ZN271_PONAB	No assigned EC number	0.5671	0.6326	0.0922	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	98
pfam13465	26	pfam13465, zf-H2C2_2, Zinc-finger double domain	0.001

>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain

 Score = 33.5 bits (77), Expect = 0.001
 Identities = 14/26 (53%), Positives = 19/26 (73%)

Query: 33 DMKKHMRKHTGEKPYKCEYCAYSCTQ 58
          ++++HMR HTGEKPYKC  C  S + 
Sbjct: 1  NLRRHMRTHTGEKPYKCPVCGKSFSS 26

Length = 26

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
KOG2462|consensus	279		99.96
KOG2462|consensus	279		99.95
KOG3576|consensus	267		99.68
KOG3576|consensus	267		99.68
KOG3623|consensus	1007		99.67
KOG1074|consensus	958		99.61
KOG3608|consensus	467		99.58
KOG3623|consensus	1007		99.53
PHA00733	128	hypothetical protein	99.34
KOG3608|consensus	467		99.31
KOG1074|consensus	958		99.31
PLN03086	567	PRLI-interacting factor K; Provisional	99.21
PHA02768	55	hypothetical protein; Provisional	99.19
PHA02768	55	hypothetical protein; Provisional	99.14
PLN03086	567	PRLI-interacting factor K; Provisional	99.12
PHA00733	128	hypothetical protein	99.12
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	99.1
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.92
KOG3993|consensus	500		98.81
PHA00616	44	hypothetical protein	98.68
PHA00732	79	hypothetical protein	98.56
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.53
PHA00616	44	hypothetical protein	98.51
PHA00732	79	hypothetical protein	98.45
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.27
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.27
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.27
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.21
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.18
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	98.14
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.89
smart00355	26	ZnF_C2H2 zinc finger.	97.86
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.81
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.7
KOG3993|consensus	500		97.66
smart00355	26	ZnF_C2H2 zinc finger.	97.57
PRK04860	160	hypothetical protein; Provisional	97.57
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.5
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.45
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.33
PRK04860	160	hypothetical protein; Provisional	97.2
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.17
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.08
COG5189	423	SFP1 Putative transcriptional repressor regulating	96.87
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.77
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	96.52
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	96.44
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	96.26
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.03
KOG2231|consensus	669		95.97
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	95.91
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	95.75
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	95.73
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	95.59
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	95.45
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	95.15
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	95.1
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	94.86
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	94.82
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	94.53
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	94.43
COG5048	467	FOG: Zn-finger [General function prediction only]	94.21
COG1592	166	Rubrerythrin [Energy production and conversion]	94.13
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	93.78
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	93.67
KOG1146|consensus	1406		93.46
PF07649	30	C1_3: C1-like domain; InterPro: IPR011424 This sho	93.38
COG5048	467	FOG: Zn-finger [General function prediction only]	93.13
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	92.83
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	92.76
PRK09678	72	DNA-binding transcriptional regulator; Provisional	92.65
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	92.54
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	92.51
KOG2186|consensus	276		92.5
COG4049	65	Uncharacterized protein containing archaeal-type C	92.33
PF03107	30	C1_2: C1 domain; InterPro: IPR004146 This short do	92.18
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	91.69
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	91.47
PHA00626	59	hypothetical protein	91.43
smart00661	52	RPOL9 RNA polymerase subunit 9.	91.36
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	91.08
COG1645	131	Uncharacterized Zn-finger containing protein [Gene	91.05
KOG2893|consensus	341		90.93
TIGR01206	54	lysW lysine biosynthesis protein LysW. This very s	90.91
PRK06266	178	transcription initiation factor E subunit alpha; V	90.68
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	90.54
cd00730	50	rubredoxin Rubredoxin; nonheme iron binding domain	90.51
KOG2186|consensus	276		90.34
PRK03824	135	hypA hydrogenase nickel incorporation protein; Pro	90.22
PF12773	50	DZR: Double zinc ribbon	89.99
COG3357	97	Predicted transcriptional regulator containing an	89.86
PRK04023	1121	DNA polymerase II large subunit; Validated	89.85
PRK00432	50	30S ribosomal protein S27ae; Validated	89.65
PF12760	46	Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int	89.47
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	89.4
PRK03681	114	hypA hydrogenase nickel incorporation protein; Val	89.04
PRK00564	117	hypA hydrogenase nickel incorporation protein; Pro	88.94
smart00531	147	TFIIE Transcription initiation factor IIE.	88.59
PF13248	26	zf-ribbon_3: zinc-ribbon domain	88.11
cd02249	46	ZZ Zinc finger, ZZ type. Zinc finger present in dy	87.56
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	87.51
KOG4173|consensus	253		87.47
COG1571	421	Predicted DNA-binding protein containing a Zn-ribb	87.43
PF01155	113	HypA: Hydrogenase expression/synthesis hypA family	87.43
PF08274	30	PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR01	86.84
PF01363	69	FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc f	86.77
KOG3507|consensus	62		86.75
PF07282	69	OrfB_Zn_ribbon: Putative transposase DNA-binding d	86.53
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	86.42
PF09845	131	DUF2072: Zn-ribbon containing protein (DUF2072); I	86.37
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	85.53
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	85.47
PRK05978	148	hypothetical protein; Provisional	85.38
COG4332	203	Uncharacterized protein conserved in bacteria [Fun	85.23
KOG1146|consensus	1406		84.87
PF14353	128	CpXC: CpXC protein	84.39
PF14634	44	zf-RING_5: zinc-RING finger domain	84.36
PF00301	47	Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubred	84.34
KOG1280|consensus	381		84.32
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	84.29
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	83.92
PRK14559	645	putative protein serine/threonine phosphatase; Pro	83.91
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	83.9
COG1773	55	Rubredoxin [Energy production and conversion]	83.76
PRK12380	113	hydrogenase nickel incorporation protein HybF; Pro	83.7
COG5151	421	SSL1 RNA polymerase II transcription initiation/nu	83.54
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	83.41
PF08271	43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	83.14
TIGR00100	115	hypA hydrogenase nickel insertion protein HypA. In	83.06
KOG2785|consensus	390		82.83
PRK14714	1337	DNA polymerase II large subunit; Provisional	82.66
PF07295	146	DUF1451: Protein of unknown function (DUF1451); In	81.82
cd02341	48	ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present	81.65
PF01286	34	XPA_N: XPA protein N-terminal; InterPro: IPR022652	80.77
KOG4167|consensus	907		80.6
TIGR00686	109	phnA alkylphosphonate utilization operon protein P	80.41
smart00154	39	ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C	80.4
PRK10220	111	hypothetical protein; Provisional	80.03

>KOG2462|consensus

Probab=99.96  E-value=2.4e-29  Score=140.83  Aligned_cols=94  Identities=30%  Similarity=0.657  Sum_probs=65.3

Q ss_pred             CCCCCCCCccCCCC--------------CCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHH
Q psy3500           2 YHCKTCSTLSRPNI--------------SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHER   67 (98)
Q Consensus         2 ~~c~~c~~~~~~~~--------------~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~   67 (98)
                      |+|++||+.+....              .+.+.|..|++.|.....|.+|+++|.  .+++|++||+.|.+...|+.|++
T Consensus       131 ~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiR  208 (279)
T KOG2462|consen  131 YKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIR  208 (279)
T ss_pred             eeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhcccc
Confidence            66777776544322              345667777777777777777777666  45677777777777777777777


Q ss_pred             hhCCCCCeecCcCcccccChHHHHHHHhhh
Q psy3500          68 KHTGDKPYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        68 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      +||||+||.|+.|+++|...++|+.|+++|
T Consensus       209 THTGEKPF~C~hC~kAFADRSNLRAHmQTH  238 (279)
T KOG2462|consen  209 THTGEKPFSCPHCGKAFADRSNLRAHMQTH  238 (279)
T ss_pred             cccCCCCccCCcccchhcchHHHHHHHHhh
Confidence            777777777777777777777777777776

>KOG2462|consensus

Probab=99.95  E-value=4.4e-28  Score=135.79  Aligned_cols=95  Identities=25%  Similarity=0.528  Sum_probs=88.6

Q ss_pred             CCCCCCCCCccC---------CCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCC
Q psy3500           1 MYHCKTCSTLSR---------PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG   71 (98)
Q Consensus         1 ~~~c~~c~~~~~---------~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   71 (98)
                      .|.|++||+.++         .++.++++|.+||+.|...=.|+.|+++|+||+||.|+.|++.|..+++|+.|+++|.+
T Consensus       161 a~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~  240 (279)
T KOG2462|consen  161 AFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSD  240 (279)
T ss_pred             cccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcC
Confidence            378999999775         34457899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeecCcCcccccChHHHHHHHh
Q psy3500          72 DKPYICQQCRDTFSSLYLFRNHLQ   95 (98)
Q Consensus        72 ~~~~~C~~C~~~f~~~~~l~~H~~   95 (98)
                      .++|+|..|++.|...+-|..|..
T Consensus       241 ~K~~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  241 VKKHQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             CccccCcchhhHHHHHHHHHHhhh
Confidence            999999999999999999999974

>KOG3576|consensus

Probab=99.68  E-value=6.4e-18  Score=91.97  Aligned_cols=79  Identities=28%  Similarity=0.627  Sum_probs=66.1

Q ss_pred             CceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHHHh
Q psy3500          17 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQ   95 (98)
Q Consensus        17 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~   95 (98)
                      -.+.|.+|++.|..-..|.+|++.|..-+.+.|..||++|...-.|.+|.++|+|.+||+|..|+++|.+.-.|..|++
T Consensus       116 d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~  194 (267)
T KOG3576|consen  116 DSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLK  194 (267)
T ss_pred             CeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHH
Confidence            4588888888888888888888888877778888888888888888888888888888888888888888888888864

>KOG3576|consensus

Probab=99.68  E-value=1.4e-17  Score=90.68  Aligned_cols=96  Identities=30%  Similarity=0.564  Sum_probs=83.2

Q ss_pred             CCCCCCCCccC-----------CCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhC
Q psy3500           2 YHCKTCSTLSR-----------PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHT   70 (98)
Q Consensus         2 ~~c~~c~~~~~-----------~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~   70 (98)
                      |.|.+||+.|.           ++.-+.+.|..||+.|...-.|++|+++|++-+||.|..|++.|...-.|..|.+.-.
T Consensus       118 ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kvh  197 (267)
T KOG3576|consen  118 FTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVH  197 (267)
T ss_pred             eeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHHc
Confidence            78999999775           5566789999999999999999999999999999999999999999999999976322


Q ss_pred             -----------CCCCeecCcCcccccChHHHHHHHhhh
Q psy3500          71 -----------GDKPYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        71 -----------~~~~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                                 .++-|.|..||.+-.....+..|++.|
T Consensus       198 gv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~  235 (267)
T KOG3576|consen  198 GVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLH  235 (267)
T ss_pred             CchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhc
Confidence                       246789999999888888888887765

>KOG3623|consensus

Probab=99.67  E-value=1.4e-17  Score=104.14  Aligned_cols=79  Identities=29%  Similarity=0.692  Sum_probs=75.2

Q ss_pred             CCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHHH
Q psy3500          16 SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHL   94 (98)
Q Consensus        16 ~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   94 (98)
                      +-.|.|..|++.|...+.|.+|.--|+|.+||.|.+|.+.|...-.|..|.+.|.|++||.|.+|++.|.+......||
T Consensus       892 ~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHM  970 (1007)
T KOG3623|consen  892 DGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHM  970 (1007)
T ss_pred             cccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhh
Confidence            3469999999999999999999999999999999999999999999999999999999999999999999998888886

>KOG1074|consensus

Probab=99.61  E-value=6.1e-17  Score=102.31  Aligned_cols=80  Identities=28%  Similarity=0.608  Sum_probs=63.0

Q ss_pred             ceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCC----CCeecC---cCcccccChHHH
Q psy3500          18 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGD----KPYICQ---QCRDTFSSLYLF   90 (98)
Q Consensus        18 ~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~----~~~~C~---~C~~~f~~~~~l   90 (98)
                      +-.|..|.+...-.+.|+.|.++|++++||.|.+|++.|....+|+.|+..|...    ..+.|+   .|-+.|...-.|
T Consensus       605 PNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~l  684 (958)
T KOG1074|consen  605 PNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVTL  684 (958)
T ss_pred             ccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhcccccccccc
Confidence            4678888888888888888888888888888888888888888888888776543    246677   777888888888


Q ss_pred             HHHHhhh
Q psy3500          91 RNHLQSH   97 (98)
Q Consensus        91 ~~H~~~h   97 (98)
                      ..|+++|
T Consensus       685 pQhIriH  691 (958)
T KOG1074|consen  685 PQHIRIH  691 (958)
T ss_pred             cceEEee
Confidence            8887776

>KOG3608|consensus

Probab=99.58  E-value=5.2e-16  Score=90.58  Aligned_cols=92  Identities=29%  Similarity=0.646  Sum_probs=78.0

Q ss_pred             CCCCCCccCCCC-------------CCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHh-h
Q psy3500           4 CKTCSTLSRPNI-------------SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERK-H   69 (98)
Q Consensus         4 c~~c~~~~~~~~-------------~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~-~   69 (98)
                      |+.||++|+...             ..+|.|..|.+.|..+..|..|+..|..  .+.|++|.-+....+.|.+|++. |
T Consensus       210 Cp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn--~ykCplCdmtc~~~ssL~~H~r~rH  287 (467)
T KOG3608|consen  210 CPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN--CYKCPLCDMTCSSASSLTTHIRYRH  287 (467)
T ss_pred             cchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh--cccccccccCCCChHHHHHHHHhhh
Confidence            888998886433             2378999999999999999999888774  48899999999999999999874 7


Q ss_pred             CCCCCeecCcCcccccChHHHHHHHhhh
Q psy3500          70 TGDKPYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        70 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      ..++||+|..|++.|...++|+.|..+|
T Consensus       288 s~dkpfKCd~Cd~~c~~esdL~kH~~~H  315 (467)
T KOG3608|consen  288 SKDKPFKCDECDTRCVRESDLAKHVQVH  315 (467)
T ss_pred             ccCCCccccchhhhhccHHHHHHHHHhc
Confidence            7789999999999999999999998876

>KOG3623|consensus

Probab=99.53  E-value=2.4e-15  Score=94.43  Aligned_cols=79  Identities=28%  Similarity=0.672  Sum_probs=71.1

Q ss_pred             CceecCCCCCcCCCHHHHHHHHHHhcCC-------------CceecCCCccccccchhHHHHHHhhCCCCCeecCcCccc
Q psy3500          17 YKYTCYACDYHTLMSEDMKKHMRKHTGE-------------KPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDT   83 (98)
Q Consensus        17 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~-------------~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~   83 (98)
                      .-|.|..|..+|.....|.+|+.+|...             +.|.|..|++.|...-.|+.|+++|.|++||.|+.|++.
T Consensus       239 ~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKR  318 (1007)
T KOG3623|consen  239 PNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKR  318 (1007)
T ss_pred             CCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchhhhhHHHHHhhheeecCCCCcCCcccccc
Confidence            4588999999999999999999887432             349999999999999999999999999999999999999


Q ss_pred             ccChHHHHHHHh
Q psy3500          84 FSSLYLFRNHLQ   95 (98)
Q Consensus        84 f~~~~~l~~H~~   95 (98)
                      |.+...+..|+.
T Consensus       319 FSHSGSySSHmS  330 (1007)
T KOG3623|consen  319 FSHSGSYSSHMS  330 (1007)
T ss_pred             cccCCccccccc
Confidence            999988888864

>PHA00733 hypothetical protein

Probab=99.34  E-value=1.2e-12  Score=67.98  Aligned_cols=80  Identities=16%  Similarity=0.301  Sum_probs=65.2

Q ss_pred             CCceecCCCCCcCCCHHHHHHH--HH---HhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHH
Q psy3500          16 SYKYTCYACDYHTLMSEDMKKH--MR---KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLF   90 (98)
Q Consensus        16 ~~~~~c~~C~~~~~~~~~l~~h--~~---~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l   90 (98)
                      .+++.|.+|...|.....|..+  ..   .+.+..|+.|+.|++.|.....|..|++.+  +.++.|..|++.|.....|
T Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL  115 (128)
T PHA00733         38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDST  115 (128)
T ss_pred             hhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHH
Confidence            3568899998888777766655  11   234577999999999999999999999876  4579999999999999999


Q ss_pred             HHHHhhh
Q psy3500          91 RNHLQSH   97 (98)
Q Consensus        91 ~~H~~~h   97 (98)
                      ..|+...
T Consensus       116 ~~H~~~~  122 (128)
T PHA00733        116 LDHVCKK  122 (128)
T ss_pred             HHHHHHh
Confidence            9998653

>KOG3608|consensus

Probab=99.31  E-value=8.9e-13  Score=77.36  Aligned_cols=84  Identities=29%  Similarity=0.584  Sum_probs=49.7

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC--CccccccchhHHHHHHh-hCCC--CCeecCcCccccc
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERK-HTGD--KPYICQQCRDTFS   85 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~--c~~~~~~~~~l~~h~~~-~~~~--~~~~C~~C~~~f~   85 (98)
                      ++++.+++|+|..|+..+...+.|.+|..+|. +..|.|..  |...+.....+..|.+. |.|.  .+|.|-.|++.|.
T Consensus       285 ~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft  363 (467)
T KOG3608|consen  285 YRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFT  363 (467)
T ss_pred             hhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhc
Confidence            44555666666666666666666666665554 33455544  55555555556666543 2232  2467777777777


Q ss_pred             ChHHHHHHHh
Q psy3500          86 SLYLFRNHLQ   95 (98)
Q Consensus        86 ~~~~l~~H~~   95 (98)
                      ...+|..|++
T Consensus       364 ~G~~L~~HL~  373 (467)
T KOG3608|consen  364 SGKSLSAHLM  373 (467)
T ss_pred             cchhHHHHHH
Confidence            7777777753

>KOG1074|consensus

Probab=99.31  E-value=3.2e-13  Score=85.96  Aligned_cols=53  Identities=32%  Similarity=0.722  Sum_probs=40.1

Q ss_pred             CceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHHHhhh
Q psy3500          45 KPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        45 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      .|-.|.+|.+...-.+.|+-|.+.|+|||||+|..||++|..+.+|..|+-+|
T Consensus       604 dPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vH  656 (958)
T KOG1074|consen  604 DPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVH  656 (958)
T ss_pred             CccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhccccc
Confidence            35667777777777777777777777777777777777777777777777665

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.21  E-value=8.7e-11  Score=73.41  Aligned_cols=74  Identities=20%  Similarity=0.472  Sum_probs=44.6

Q ss_pred             CCCccC-CCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCccccc
Q psy3500           7 CSTLSR-PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS   85 (98)
Q Consensus         7 c~~~~~-~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~   85 (98)
                      ||..|. ...+.++.|..|+..|. ...|..|+..+.  .++.|+ |+..+ ....|..|+..+.+.+++.|+.|+..+.
T Consensus       441 Cg~v~~r~el~~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~  515 (567)
T PLN03086        441 CGIVLRVEEAKNHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQ  515 (567)
T ss_pred             ccceeeccccccCccCCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccc
Confidence            555443 33345566777766664 455666666553  566676 76543 4456666666666667777777766663

>PHA02768 hypothetical protein; Provisional

Probab=99.19  E-value=7.4e-12  Score=55.22  Aligned_cols=39  Identities=26%  Similarity=0.492  Sum_probs=19.5

Q ss_pred             eecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccc
Q psy3500          19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQS   59 (98)
Q Consensus        19 ~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~   59 (98)
                      |+|+.||+.|...+.|..|+++|.  +++.|..|++.|...
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~   44 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRT   44 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccc
Confidence            445555555555555555555544  344555555544433

>PHA02768 hypothetical protein; Provisional

Probab=99.14  E-value=3e-11  Score=53.30  Aligned_cols=43  Identities=19%  Similarity=0.358  Sum_probs=38.9

Q ss_pred             ceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHH
Q psy3500          46 PYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLF   90 (98)
Q Consensus        46 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l   90 (98)
                      -|.|+.||+.|...++|..|++.|+  ++++|..|++.|...+.|
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            3789999999999999999999998  689999999999877654

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.12  E-value=5.3e-10  Score=69.99  Aligned_cols=89  Identities=18%  Similarity=0.373  Sum_probs=70.0

Q ss_pred             CCCCCCCCccCCC--------CCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCcccccc----------chhHH
Q psy3500           2 YHCKTCSTLSRPN--------ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQ----------SSALK   63 (98)
Q Consensus         2 ~~c~~c~~~~~~~--------~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~----------~~~l~   63 (98)
                      ++|+.||+.|...        ..+++.|+ |+..+ ....|..|+.+|-..+++.|+.|+..+..          .+.|.
T Consensus       454 ~~C~~Cgk~f~~s~LekH~~~~Hkpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt  531 (567)
T PLN03086        454 VHCEKCGQAFQQGEMEKHMKVFHEPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMS  531 (567)
T ss_pred             ccCCCCCCccchHHHHHHHHhcCCCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHH
Confidence            6899999877421        02678999 99755 66889999999999999999999998842          34788


Q ss_pred             HHHHhhCCCCCeecCcCcccccChHHHHHHH
Q psy3500          64 IHERKHTGDKPYICQQCRDTFSSLYLFRNHL   94 (98)
Q Consensus        64 ~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   94 (98)
                      .|.... |.+++.|..||+.+.... +..|+
T Consensus       532 ~HE~~C-G~rt~~C~~Cgk~Vrlrd-m~~H~  560 (567)
T PLN03086        532 EHESIC-GSRTAPCDSCGRSVMLKE-MDIHQ  560 (567)
T ss_pred             HHHHhc-CCcceEccccCCeeeehh-HHHHH
Confidence            888874 899999999998877653 55554

>PHA00733 hypothetical protein

Probab=99.12  E-value=7.8e-11  Score=61.29  Aligned_cols=53  Identities=23%  Similarity=0.331  Sum_probs=46.7

Q ss_pred             CCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhh
Q psy3500          15 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH   69 (98)
Q Consensus        15 ~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~   69 (98)
                      ++.+|.|..|++.|.....|..|+..+  ..++.|..|++.|.....|..|+...
T Consensus        70 ~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~~~  122 (128)
T PHA00733         70 AVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDSTLDHVCKK  122 (128)
T ss_pred             CCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHHHHHHHHh
Confidence            456899999999999999999999865  35799999999999999999998754

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=99.10  E-value=1.1e-10  Score=44.44  Aligned_cols=24  Identities=54%  Similarity=1.092  Sum_probs=17.1

Q ss_pred             HHHHHHhhCCCCCeecCcCccccc
Q psy3500          62 LKIHERKHTGDKPYICQQCRDTFS   85 (98)
Q Consensus        62 l~~h~~~~~~~~~~~C~~C~~~f~   85 (98)
                      |..|++.|++++||.|+.|++.|.
T Consensus         2 l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    2 LRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHSSSSSEEESSSSEEES
T ss_pred             HHHHhhhcCCCCCCCCCCCcCeeC
Confidence            566777777777777777777765

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.92  E-value=1.8e-09  Score=41.04  Aligned_cols=25  Identities=60%  Similarity=1.299  Sum_probs=23.0

Q ss_pred             HHHHHHHHhcCCCceecCCCccccc
Q psy3500          33 DMKKHMRKHTGEKPYKCEYCAYSCT   57 (98)
Q Consensus        33 ~l~~h~~~h~~~~~~~c~~c~~~~~   57 (98)
                      +|..|+++|++++||.|+.|++.|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            4789999999999999999999886

...

>KOG3993|consensus

Probab=98.81  E-value=8e-10  Score=66.45  Aligned_cols=24  Identities=25%  Similarity=0.627  Sum_probs=22.2

Q ss_pred             CeecCcCcccccChHHHHHHHhhh
Q psy3500          74 PYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        74 ~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      -|.|..|++.|....-|+.|+.+|
T Consensus       356 i~~C~~C~KkFrRqAYLrKHqlth  379 (500)
T KOG3993|consen  356 IFSCHTCGKKFRRQAYLRKHQLTH  379 (500)
T ss_pred             eeecHHhhhhhHHHHHHHHhHHhh
Confidence            589999999999999999998776

>PHA00616 hypothetical protein

Probab=98.68  E-value=9.6e-09  Score=43.37  Aligned_cols=34  Identities=18%  Similarity=0.362  Sum_probs=24.8

Q ss_pred             ceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          18 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        18 ~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      +|+|+.||..|.....|..|++.|++++++.+..
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            4677777777777777777777777777766654

>PHA00732 hypothetical protein

Probab=98.56  E-value=6.3e-08  Score=46.34  Aligned_cols=45  Identities=31%  Similarity=0.564  Sum_probs=36.2

Q ss_pred             ceecCCCCCcCCCHHHHHHHHHH-hcCCCceecCCCccccccchhHHHHHHh
Q psy3500          18 KYTCYACDYHTLMSEDMKKHMRK-HTGEKPYKCEYCAYSCTQSSALKIHERK   68 (98)
Q Consensus        18 ~~~c~~C~~~~~~~~~l~~h~~~-h~~~~~~~c~~c~~~~~~~~~l~~h~~~   68 (98)
                      +|.|..|++.|.....|..|++. |.+   +.|+.|++.|..   +..|...
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~~---l~~H~~~   46 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL---TKCPVCNKSYRR---LNQHFYS   46 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC---CccCCCCCEeCC---hhhhhcc
Confidence            47899999999999999999874 553   579999999884   5667643

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.53  E-value=1e-07  Score=35.01  Aligned_cols=23  Identities=35%  Similarity=0.769  Sum_probs=18.3

Q ss_pred             eecCcCcccccChHHHHHHHhhh
Q psy3500          75 YICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        75 ~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      |.|+.|++.|.....|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            57888888888888888888764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PHA00616 hypothetical protein

Probab=98.51  E-value=5e-08  Score=41.21  Aligned_cols=34  Identities=12%  Similarity=0.143  Sum_probs=29.9

Q ss_pred             ceecCCCccccccchhHHHHHHhhCCCCCeecCc
Q psy3500          46 PYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ   79 (98)
Q Consensus        46 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~   79 (98)
                      |+.|+.||+.|.....+..|++.+++++++.|..
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            5789999999999999999999999998887754

>PHA00732 hypothetical protein

Probab=98.45  E-value=2.8e-07  Score=44.16  Aligned_cols=44  Identities=30%  Similarity=0.684  Sum_probs=28.2

Q ss_pred             ceecCCCccccccchhHHHHHHh-hCCCCCeecCcCcccccChHHHHHHHh
Q psy3500          46 PYKCEYCAYSCTQSSALKIHERK-HTGDKPYICQQCRDTFSSLYLFRNHLQ   95 (98)
Q Consensus        46 ~~~c~~c~~~~~~~~~l~~h~~~-~~~~~~~~C~~C~~~f~~~~~l~~H~~   95 (98)
                      |+.|..|++.|.....|..|++. |.   ++.|+.|++.|..   +..|.+
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~~---l~~H~~   45 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYRR---LNQHFY   45 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeCC---hhhhhc
Confidence            45677777777777777777663 43   2467777777763   445543

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.27  E-value=1.3e-06  Score=32.10  Aligned_cols=24  Identities=29%  Similarity=0.710  Sum_probs=17.0

Q ss_pred             eecCcCcccccChHHHHHHHhhhC
Q psy3500          75 YICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        75 ~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      |.|+.|++.|.....|..|+++++
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            567888888888888888887663

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.27  E-value=9.7e-07  Score=33.62  Aligned_cols=24  Identities=50%  Similarity=0.987  Sum_probs=19.0

Q ss_pred             CeecCcCcccccChHHHHHHHhhh
Q psy3500          74 PYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        74 ~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      ||.|..|++.|.....|..|++.|
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHh
Confidence            577888888888888888888765

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.27  E-value=1.1e-06  Score=32.18  Aligned_cols=22  Identities=32%  Similarity=0.727  Sum_probs=13.8

Q ss_pred             eecCCCCCcCCCHHHHHHHHHH
Q psy3500          19 YTCYACDYHTLMSEDMKKHMRK   40 (98)
Q Consensus        19 ~~c~~C~~~~~~~~~l~~h~~~   40 (98)
                      |+|+.|++.|.....|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4566666666666666666654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.21  E-value=3.7e-06  Score=37.43  Aligned_cols=46  Identities=26%  Similarity=0.579  Sum_probs=19.7

Q ss_pred             eecCCCccccccchhHHHHHHh-hCCC-CCeecCcCcccccChHHHHHHHh
Q psy3500          47 YKCEYCAYSCTQSSALKIHERK-HTGD-KPYICQQCRDTFSSLYLFRNHLQ   95 (98)
Q Consensus        47 ~~c~~c~~~~~~~~~l~~h~~~-~~~~-~~~~C~~C~~~f~~~~~l~~H~~   95 (98)
                      |.|+.|++. .+...|..|... |..+ +.+.|+.|...+.  .+|..|+.
T Consensus         3 f~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~   50 (54)
T PF05605_consen    3 FTCPYCGKG-FSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLN   50 (54)
T ss_pred             cCCCCCCCc-cCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHH
Confidence            445555552 223445555332 2222 2355555554322  24555544

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.18  E-value=8e-06  Score=36.35  Aligned_cols=49  Identities=24%  Similarity=0.476  Sum_probs=36.9

Q ss_pred             ceecCCCCCcCCCHHHHHHHHH-HhcCC-CceecCCCccccccchhHHHHHHhh
Q psy3500          18 KYTCYACDYHTLMSEDMKKHMR-KHTGE-KPYKCEYCAYSCTQSSALKIHERKH   69 (98)
Q Consensus        18 ~~~c~~C~~~~~~~~~l~~h~~-~h~~~-~~~~c~~c~~~~~~~~~l~~h~~~~   69 (98)
                      .|.|+.|++ ......|..|.. .|..+ +.+.|++|...+.  .+|..|+...
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~   52 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQ   52 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHh
Confidence            478999999 556778999977 45543 5689999998544  4788887754

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=98.14  E-value=3e-06  Score=42.06  Aligned_cols=72  Identities=26%  Similarity=0.423  Sum_probs=19.1

Q ss_pred             ecCCCCCcCCCHHHHHHHHHH-hcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHHHhhh
Q psy3500          20 TCYACDYHTLMSEDMKKHMRK-HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        20 ~c~~C~~~~~~~~~l~~h~~~-h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      +|..|+..|.....|..|+.. |.-..+     ....+.....+..+.... ....+.|..|++.|.....|..|++.+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~-----~~~~l~~~~~~~~~~~~~-~~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIP-----DQKYLVDPNRLLNYLRKK-VKESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             ------------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             Cccccccccccccccccccccccccccc-----cccccccccccccccccc-cCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            477888888888888888864 322211     001111222233332221 122588888888888888888888754

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.89  E-value=1.9e-05  Score=28.76  Aligned_cols=23  Identities=26%  Similarity=0.686  Sum_probs=12.8

Q ss_pred             eecCCCCCcCCCHHHHHHHHHHh
Q psy3500          19 YTCYACDYHTLMSEDMKKHMRKH   41 (98)
Q Consensus        19 ~~c~~C~~~~~~~~~l~~h~~~h   41 (98)
                      |.|+.|+..|.....|..|+..+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            45666666666666666666543

...

>smart00355 ZnF_C2H2 zinc finger

Probab=97.86  E-value=1.7e-05  Score=29.42  Aligned_cols=23  Identities=30%  Similarity=0.824  Sum_probs=17.3

Q ss_pred             eecCcCcccccChHHHHHHHhhh
Q psy3500          75 YICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        75 ~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      |.|..|++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            46777888888888888887755

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.81  E-value=1.8e-05  Score=30.01  Aligned_cols=21  Identities=19%  Similarity=0.493  Sum_probs=10.4

Q ss_pred             eecCCCCCcCCCHHHHHHHHH
Q psy3500          19 YTCYACDYHTLMSEDMKKHMR   39 (98)
Q Consensus        19 ~~c~~C~~~~~~~~~l~~h~~   39 (98)
                      |+|..|++.|.....|..|++
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~   22 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKR   22 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHC
T ss_pred             CCCCccCCccCChhHHHHHhH
Confidence            445555555555555554443

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.70  E-value=5.8e-05  Score=32.77  Aligned_cols=31  Identities=29%  Similarity=0.408  Sum_probs=15.0

Q ss_pred             CCCceecCCCccccccchhHHHHHHhhCCCC
Q psy3500          43 GEKPYKCEYCAYSCTQSSALKIHERKHTGDK   73 (98)
Q Consensus        43 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   73 (98)
                      .+.|..|++|+..+....+|.+|+....+.+
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k   51 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKK   51 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhccc
Confidence            3455666666666666666666665554444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG3993|consensus

Probab=97.66  E-value=5e-06  Score=50.72  Aligned_cols=51  Identities=25%  Similarity=0.464  Sum_probs=35.1

Q ss_pred             eecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHHHhhh
Q psy3500          47 YKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        47 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      |.|+.|...|...-.|..|.-..-...-|+|++|+++|.-..+|..|+|=|
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWH  318 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWH  318 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhccc
Confidence            777777777777777777753322222377888888888777777777654

>smart00355 ZnF_C2H2 zinc finger

Probab=97.57  E-value=0.00013  Score=26.84  Aligned_cols=23  Identities=35%  Similarity=0.668  Sum_probs=15.0

Q ss_pred             eecCCCCCcCCCHHHHHHHHHHh
Q psy3500          19 YTCYACDYHTLMSEDMKKHMRKH   41 (98)
Q Consensus        19 ~~c~~C~~~~~~~~~l~~h~~~h   41 (98)
                      |.|..|+..|.....+..|+..|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            35666777777776777666644

>PRK04860 hypothetical protein; Provisional

Probab=97.57  E-value=0.00011  Score=39.88  Aligned_cols=38  Identities=29%  Similarity=0.771  Sum_probs=31.0

Q ss_pred             ceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccCh
Q psy3500          46 PYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSL   87 (98)
Q Consensus        46 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~   87 (98)
                      +|.|. |+.   ....+..|.++++++++|.|..|+..|...
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            58887 887   555678899999999999999999887653

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.50  E-value=0.00012  Score=27.05  Aligned_cols=23  Identities=39%  Similarity=0.804  Sum_probs=17.1

Q ss_pred             eecCcCcccccChHHHHHHHhhh
Q psy3500          75 YICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        75 ~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      |.|..|+..|.....+..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            56777888888888888877653

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.45  E-value=4.2e-05  Score=45.38  Aligned_cols=52  Identities=33%  Similarity=0.680  Sum_probs=38.0

Q ss_pred             CCceecCC--CccccccchhHHHHHHhh-------------------CCCCCeecCcCcccccChHHHHHHHh
Q psy3500          44 EKPYKCEY--CAYSCTQSSALKIHERKH-------------------TGDKPYICQQCRDTFSSLYLFRNHLQ   95 (98)
Q Consensus        44 ~~~~~c~~--c~~~~~~~~~l~~h~~~~-------------------~~~~~~~C~~C~~~f~~~~~l~~H~~   95 (98)
                      ++||.|++  |.+.|.....|+-|+.--                   ...+||+|+.|++.+....-|.-|+.
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            47777766  677777777777776421                   12479999999999998888877753

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.33  E-value=0.00066  Score=29.55  Aligned_cols=33  Identities=21%  Similarity=0.360  Sum_probs=22.6

Q ss_pred             CCCCceecCCCCCcCCCHHHHHHHHHHhcCCCc
Q psy3500          14 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKP   46 (98)
Q Consensus        14 ~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~   46 (98)
                      ..+.|-+|++|+..+.+..+|.+|+....+.+|
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            445789999999999999999999987666554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PRK04860 hypothetical protein; Provisional

Probab=97.20  E-value=0.00038  Score=37.81  Aligned_cols=40  Identities=25%  Similarity=0.623  Sum_probs=33.6

Q ss_pred             CceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccch
Q psy3500          17 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSS   60 (98)
Q Consensus        17 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~   60 (98)
                      .+|.|. |+.   ....+..|.+++.++++|.|..|+..|....
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence            469997 987   5567899999999999999999998876543

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.17  E-value=0.00031  Score=25.94  Aligned_cols=21  Identities=19%  Similarity=0.618  Sum_probs=12.5

Q ss_pred             eecCCCCCcCCCHHHHHHHHH
Q psy3500          19 YTCYACDYHTLMSEDMKKHMR   39 (98)
Q Consensus        19 ~~c~~C~~~~~~~~~l~~h~~   39 (98)
                      |.|.+|+..|.....+..|++
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCCcCCHHHHHHHHC
Confidence            356666666666666666554

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.08  E-value=0.00021  Score=27.06  Aligned_cols=22  Identities=32%  Similarity=0.756  Sum_probs=16.1

Q ss_pred             eecCcCcccccChHHHHHHHhh
Q psy3500          75 YICQQCRDTFSSLYLFRNHLQS   96 (98)
Q Consensus        75 ~~C~~C~~~f~~~~~l~~H~~~   96 (98)
                      |.|..|++.|.....|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            5677777777777777777654

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=96.87  E-value=0.00035  Score=41.62  Aligned_cols=53  Identities=30%  Similarity=0.615  Sum_probs=41.2

Q ss_pred             CCCceecCC--CCCcCCCHHHHHHHHHH-h------------------cCCCceecCCCccccccchhHHHHHH
Q psy3500          15 ISYKYTCYA--CDYHTLMSEDMKKHMRK-H------------------TGEKPYKCEYCAYSCTQSSALKIHER   67 (98)
Q Consensus        15 ~~~~~~c~~--C~~~~~~~~~l~~h~~~-h------------------~~~~~~~c~~c~~~~~~~~~l~~h~~   67 (98)
                      ++++|+|++  |++.+...-.|+-|+.- |                  ...+||.|.+|++.|.....|+-|+.
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            358999974  77888888888888742 2                  12378999999999999998887754

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.77  E-value=0.0024  Score=23.28  Aligned_cols=22  Identities=36%  Similarity=1.013  Sum_probs=13.4

Q ss_pred             eecCCCCCcCCCHHHHHHHHHHh
Q psy3500          19 YTCYACDYHTLMSEDMKKHMRKH   41 (98)
Q Consensus        19 ~~c~~C~~~~~~~~~l~~h~~~h   41 (98)
                      |.|+.|+.... ...|..|+..+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhh
Confidence            56777776666 66777776653

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=96.52  E-value=0.0034  Score=23.31  Aligned_cols=21  Identities=19%  Similarity=0.362  Sum_probs=12.5

Q ss_pred             eecCcCcccccChHHHHHHHhh
Q psy3500          75 YICQQCRDTFSSLYLFRNHLQS   96 (98)
Q Consensus        75 ~~C~~C~~~f~~~~~l~~H~~~   96 (98)
                      ..|+.||+.| ....|..|+++
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            3566777777 44446666553

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=96.44  E-value=0.0052  Score=27.65  Aligned_cols=9  Identities=44%  Similarity=1.438  Sum_probs=5.2

Q ss_pred             CCeecCcCc
Q psy3500          73 KPYICQQCR   81 (98)
Q Consensus        73 ~~~~C~~C~   81 (98)
                      .+|.|+.||
T Consensus        47 ~~Y~CP~CG   55 (59)
T PRK14890         47 NPYTCPKCG   55 (59)
T ss_pred             CceECCCCC
Confidence            456666665

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=96.26  E-value=0.0075  Score=27.12  Aligned_cols=32  Identities=22%  Similarity=0.527  Sum_probs=16.2

Q ss_pred             CceecCCCccccccchhHHHHHHhhCCCCCeecCcCc
Q psy3500          45 KPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCR   81 (98)
Q Consensus        45 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~   81 (98)
                      ..|.|+.||.....+-.     +-.....+|.|+.||
T Consensus        26 v~F~CPnCGe~~I~Rc~-----~CRk~g~~Y~Cp~CG   57 (61)
T COG2888          26 VKFPCPNCGEVEIYRCA-----KCRKLGNPYRCPKCG   57 (61)
T ss_pred             eEeeCCCCCceeeehhh-----hHHHcCCceECCCcC
Confidence            34667777754333221     111224467777775

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.03  E-value=0.011  Score=29.12  Aligned_cols=24  Identities=29%  Similarity=0.714  Sum_probs=20.8

Q ss_pred             ceecCCCccccccchhHHHHHHhh
Q psy3500          46 PYKCEYCAYSCTQSSALKIHERKH   69 (98)
Q Consensus        46 ~~~c~~c~~~~~~~~~l~~h~~~~   69 (98)
                      .+.|..|+..|.+...|..|+..+
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCc
Confidence            689999999999999999999864

>KOG2231|consensus

Probab=95.97  E-value=0.018  Score=38.01  Aligned_cols=92  Identities=23%  Similarity=0.349  Sum_probs=50.8

Q ss_pred             CCCCCCCCccCCCCCCceecCCCCCcCCCHHHHHHHHH-HhcCCCceecCC-------CccccccchhHHHHHHh-hCCC
Q psy3500           2 YHCKTCSTLSRPNISYKYTCYACDYHTLMSEDMKKHMR-KHTGEKPYKCEY-------CAYSCTQSSALKIHERK-HTGD   72 (98)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~-~h~~~~~~~c~~-------c~~~~~~~~~l~~h~~~-~~~~   72 (98)
                      +.|.+|++.+.....+ -.|..| -.|.....|+.|+. .|....-..|..       +.+.|.. ..|..|+.. ..++
T Consensus       100 ~~C~~C~~~~~~~~~~-~~~~~c-~~~~s~~~Lk~H~~~~H~~~~c~lC~~~~kif~~e~k~Yt~-~el~~h~~~gd~d~  176 (669)
T KOG2231|consen  100 HSCHICDRRFRALYNK-KECLHC-TEFKSVENLKNHMRDQHKLHLCSLCLQNLKIFINERKLYTR-AELNLHLMFGDPDD  176 (669)
T ss_pred             hhcCccccchhhhccc-CCCccc-cchhHHHHHHHHHHHhhhhhccccccccceeeeeeeehehH-HHHHHHHhcCCCcc
Confidence            4688888877654432 256677 56777788999985 343321112211       2233333 334555432 1112


Q ss_pred             CC----eecCcCcccccChHHHHHHHhh
Q psy3500          73 KP----YICQQCRDTFSSLYLFRNHLQS   96 (98)
Q Consensus        73 ~~----~~C~~C~~~f~~~~~l~~H~~~   96 (98)
                      +.    -.|..|...|.....|..|++.
T Consensus       177 ~s~rGhp~C~~C~~~fld~~el~rH~~~  204 (669)
T KOG2231|consen  177 ESCRGHPLCKFCHERFLDDDELYRHLRF  204 (669)
T ss_pred             ccccCCccchhhhhhhccHHHHHHhhcc
Confidence            22    3466677777777778777764

>smart00451 ZnF_U1 U1-like zinc finger

Probab=95.91  E-value=0.01  Score=23.57  Aligned_cols=22  Identities=27%  Similarity=0.617  Sum_probs=15.1

Q ss_pred             CeecCcCcccccChHHHHHHHh
Q psy3500          74 PYICQQCRDTFSSLYLFRNHLQ   95 (98)
Q Consensus        74 ~~~C~~C~~~f~~~~~l~~H~~   95 (98)
                      +|.|..|+..|.....+..|+.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            4667777777777777766654

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=95.75  E-value=0.0065  Score=25.98  Aligned_cols=27  Identities=22%  Similarity=0.520  Sum_probs=15.5

Q ss_pred             CCCCCCCCccCCCCCC-ceecCCCCCcC
Q psy3500           2 YHCKTCSTLSRPNISY-KYTCYACDYHT   28 (98)
Q Consensus         2 ~~c~~c~~~~~~~~~~-~~~c~~C~~~~   28 (98)
                      |.|+.||..+.-.... ...|+.||..+
T Consensus         4 y~C~~CG~~~~~~~~~~~~~Cp~CG~~~   31 (46)
T PRK00398          4 YKCARCGREVELDEYGTGVRCPYCGYRI   31 (46)
T ss_pred             EECCCCCCEEEECCCCCceECCCCCCeE
Confidence            6677777655432222 56677776544

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=95.73  E-value=0.0085  Score=23.76  Aligned_cols=24  Identities=21%  Similarity=0.589  Sum_probs=14.9

Q ss_pred             CCCCCCCCccCCCCCCceecCCCCC
Q psy3500           2 YHCKTCSTLSRPNISYKYTCYACDY   26 (98)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~c~~C~~   26 (98)
                      |+|..||-.+.. .+.+..|+.|+.
T Consensus         2 ~~C~~CGy~y~~-~~~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDG-EEAPWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECC-CcCCCcCcCCCC
Confidence            677777766543 224566777764

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=95.59  E-value=0.011  Score=25.18  Aligned_cols=26  Identities=23%  Similarity=0.597  Sum_probs=15.2

Q ss_pred             CCCCCCCCccCCCCCCceecCCCCCc
Q psy3500           2 YHCKTCSTLSRPNISYKYTCYACDYH   27 (98)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~c~~C~~~   27 (98)
                      |.|..||..+.-...-...|+.||..
T Consensus         3 Y~C~~Cg~~~~~~~~~~irC~~CG~r   28 (44)
T smart00659        3 YICGECGRENEIKSKDVVRCRECGYR   28 (44)
T ss_pred             EECCCCCCEeecCCCCceECCCCCce
Confidence            55666666555444445566666644

present in RNA polymerase I, II and III

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=95.45  E-value=0.0093  Score=23.87  Aligned_cols=24  Identities=17%  Similarity=0.466  Sum_probs=13.8

Q ss_pred             CCCCCCCCccCCCCCCceecCCCCC
Q psy3500           2 YHCKTCSTLSRPNISYKYTCYACDY   26 (98)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~c~~C~~   26 (98)
                      |+|..||....- .+.+..|+.|+.
T Consensus         3 ~~C~~CG~i~~g-~~~p~~CP~Cg~   26 (34)
T cd00729           3 WVCPVCGYIHEG-EEAPEKCPICGA   26 (34)
T ss_pred             EECCCCCCEeEC-CcCCCcCcCCCC
Confidence            567777754431 224556777764

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=95.15  E-value=0.031  Score=20.54  Aligned_cols=22  Identities=23%  Similarity=0.751  Sum_probs=11.6

Q ss_pred             CCCCCCccCCCC-CCceecCCCC
Q psy3500           4 CKTCSTLSRPNI-SYKYTCYACD   25 (98)
Q Consensus         4 c~~c~~~~~~~~-~~~~~c~~C~   25 (98)
                      |..||....+-. ...|.|+.||
T Consensus         1 C~sC~~~i~~r~~~v~f~CPnCG   23 (24)
T PF07754_consen    1 CTSCGRPIAPREQAVPFPCPNCG   23 (24)
T ss_pred             CccCCCcccCcccCceEeCCCCC
Confidence            344555444333 4566676665

It is likely to bind zinc via its four well-conserved cysteine residues.

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=95.10  E-value=0.027  Score=21.12  Aligned_cols=22  Identities=23%  Similarity=0.626  Sum_probs=10.8

Q ss_pred             CCCCCCccCCCCCCceecCCCCCcC
Q psy3500           4 CKTCSTLSRPNISYKYTCYACDYHT   28 (98)
Q Consensus         4 c~~c~~~~~~~~~~~~~c~~C~~~~   28 (98)
                      |+.|++.......   .|+.||..|
T Consensus         3 CP~C~~~V~~~~~---~Cp~CG~~F   24 (26)
T PF10571_consen    3 CPECGAEVPESAK---FCPHCGYDF   24 (26)
T ss_pred             CCCCcCCchhhcC---cCCCCCCCC
Confidence            5555554433333   256666555

Several members are annotated as putative helicases.

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=94.86  E-value=0.043  Score=22.34  Aligned_cols=33  Identities=18%  Similarity=0.535  Sum_probs=19.2

Q ss_pred             ecCCCccccccchhHHHHHHhhCCCCCeecCcCccccc
Q psy3500          48 KCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS   85 (98)
Q Consensus        48 ~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~   85 (98)
                      .|+.|+..|.-...     +...+.+..+|+.|+..|.
T Consensus         4 ~CP~C~~~f~v~~~-----~l~~~~~~vrC~~C~~~f~   36 (37)
T PF13719_consen    4 TCPNCQTRFRVPDD-----KLPAGGRKVRCPKCGHVFR   36 (37)
T ss_pred             ECCCCCceEEcCHH-----HcccCCcEEECCCCCcEee
Confidence            57777776666543     1123334577777776664

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=94.82  E-value=0.024  Score=22.36  Aligned_cols=27  Identities=19%  Similarity=0.431  Sum_probs=16.5

Q ss_pred             CCCCCCCCccCCCCCCceecCCCCCcC
Q psy3500           2 YHCKTCSTLSRPNISYKYTCYACDYHT   28 (98)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~c~~C~~~~   28 (98)
                      |.|-.||..+.-...-+-.|+.||...
T Consensus         1 Y~C~~Cg~~~~~~~~~~irC~~CG~RI   27 (32)
T PF03604_consen    1 YICGECGAEVELKPGDPIRCPECGHRI   27 (32)
T ss_dssp             EBESSSSSSE-BSTSSTSSBSSSS-SE
T ss_pred             CCCCcCCCeeEcCCCCcEECCcCCCeE
Confidence            567778876664444456788887654

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>TIGR00622 ssl1 transcription factor ssl1

Probab=94.53  E-value=0.12  Score=26.55  Aligned_cols=90  Identities=18%  Similarity=0.380  Sum_probs=51.6

Q ss_pred             CCCCCCCCccCCCCCCceecCCCCCcCCCHHHHHHHHHHhc------CCC-------ceecCCCccccccchhHHHHHHh
Q psy3500           2 YHCKTCSTLSRPNISYKYTCYACDYHTLMSEDMKKHMRKHT------GEK-------PYKCEYCAYSCTQSSALKIHERK   68 (98)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~------~~~-------~~~c~~c~~~~~~~~~l~~h~~~   68 (98)
                      |.|+.|+.-   -=++|-+|+.|+-+......|.+..- |.      .+.       ...|-.|...|........  ..
T Consensus         2 Y~CPrC~sk---vC~LP~~CpiCgLtLVss~HLARSyH-HLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~--~~   75 (112)
T TIGR00622         2 YFCPQCRAK---VCELPVECPICGLTLILSTHLARSYH-HLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPF--DE   75 (112)
T ss_pred             ccCCCCCCC---ccCCCCcCCcCCCEEeccchHHHhhh-ccCCCcccccccccccCCCCcccCcCCCCCCcccccc--cc
Confidence            566666532   23567889999888777766665421 10      011       1237777777765431110  00


Q ss_pred             hCCCCCeecCcCcccccChHHHHHHHhhh
Q psy3500          69 HTGDKPYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        69 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      -.....|.|+.|...|-..-+.-.|...|
T Consensus        76 ~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        76 LKDSHRYVCAVCKNVFCVDCDVFVHESLH  104 (112)
T ss_pred             cccccceeCCCCCCccccccchhhhhhcc
Confidence            11233589999998887766666666555

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=94.43  E-value=0.041  Score=28.10  Aligned_cols=34  Identities=21%  Similarity=0.432  Sum_probs=19.7

Q ss_pred             CCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccc
Q psy3500          15 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQS   59 (98)
Q Consensus        15 ~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~   59 (98)
                      ...+..|+.||..|-.           .+..|..|+.||..|...
T Consensus         6 lGtKR~Cp~CG~kFYD-----------Lnk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen    6 LGTKRTCPSCGAKFYD-----------LNKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             cCCcccCCCCcchhcc-----------CCCCCccCCCCCCccCcc
Confidence            3445567777766631           223566677777666655

The function of members of this family is unknown.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.21  E-value=0.0098  Score=36.57  Aligned_cols=62  Identities=29%  Similarity=0.508  Sum_probs=48.6

Q ss_pred             CceecCCCCCcCCCHHHHHHHHH--HhcCC--CceecC--CCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          17 YKYTCYACDYHTLMSEDMKKHMR--KHTGE--KPYKCE--YCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        17 ~~~~c~~C~~~~~~~~~l~~h~~--~h~~~--~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      +++.+..|...|.....+..|..  .|.++  +++.|+  .|++.|.....+..|...+.+..++.+.
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEK  355 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccc
Confidence            35778888888888888888888  68888  888888  6888888888888888777776655543

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=94.13  E-value=0.034  Score=30.53  Aligned_cols=11  Identities=45%  Similarity=1.069  Sum_probs=6.4

Q ss_pred             CCCceecCCCc
Q psy3500          43 GEKPYKCEYCA   53 (98)
Q Consensus        43 ~~~~~~c~~c~   53 (98)
                      ++-|-.||+|+
T Consensus       146 ge~P~~CPiCg  156 (166)
T COG1592         146 GEAPEVCPICG  156 (166)
T ss_pred             CCCCCcCCCCC
Confidence            34556666665

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=93.78  E-value=0.11  Score=20.97  Aligned_cols=33  Identities=15%  Similarity=0.407  Sum_probs=18.7

Q ss_pred             eecCCCccccccchhHHHHHHhhCCCCCeecCcCcccc
Q psy3500          47 YKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTF   84 (98)
Q Consensus        47 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f   84 (98)
                      ..|+.|+..|.-....     +....+..+|+.|+..|
T Consensus         3 i~Cp~C~~~y~i~d~~-----ip~~g~~v~C~~C~~~f   35 (36)
T PF13717_consen    3 ITCPNCQAKYEIDDEK-----IPPKGRKVRCSKCGHVF   35 (36)
T ss_pred             EECCCCCCEEeCCHHH-----CCCCCcEEECCCCCCEe
Confidence            3567777766665432     12223346777777665

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=93.67  E-value=0.11  Score=21.07  Aligned_cols=34  Identities=15%  Similarity=0.347  Sum_probs=17.6

Q ss_pred             eecCCCccccccchhHHHHHHhhCCCCCeecCcCccccc
Q psy3500          47 YKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS   85 (98)
Q Consensus        47 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~   85 (98)
                      ..|+.|+..|.-.....     ........|+.|+..|.
T Consensus         3 ~~CP~C~~~~~v~~~~~-----~~~~~~v~C~~C~~~~~   36 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQL-----GANGGKVRCGKCGHVWY   36 (38)
T ss_pred             EECCCCCCEEEeCHHHc-----CCCCCEEECCCCCCEEE
Confidence            45677776665554321     11112466777776553

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>KOG1146|consensus

Probab=93.46  E-value=0.028  Score=39.74  Aligned_cols=75  Identities=25%  Similarity=0.495  Sum_probs=40.4

Q ss_pred             CceecCCCCCcCCCHHHHHHHHHH-hcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHHHh
Q psy3500          17 YKYTCYACDYHTLMSEDMKKHMRK-HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQ   95 (98)
Q Consensus        17 ~~~~c~~C~~~~~~~~~l~~h~~~-h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~   95 (98)
                      +.+.|+.|...|.....|..||++ |.....   .+|... .....+.+=.....+.++|.|..|...+.....|..|+.
T Consensus       464 kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~---~~c~~g-q~~~~~arg~~~~~~~~p~~C~~C~~stttng~Lsihlq  539 (1406)
T KOG1146|consen  464 KTLKCPKCNWHYKLAQTLGVHMRSKHPESQS---AYCKAG-QNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQ  539 (1406)
T ss_pred             ccccCCccchhhhhHHHhhhcccccccccch---hHhHhc-cccccccccccccCCCCcccceeeeeeeecchHHHHHHH
Confidence            456677777777766777776664 332211   111110 000000000001123458899999999999888888875

>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines

Probab=93.38  E-value=0.062  Score=20.67  Aligned_cols=24  Identities=25%  Similarity=0.894  Sum_probs=8.9

Q ss_pred             CCCCCCCCccCCCCCCceecCCCCCc
Q psy3500           2 YHCKTCSTLSRPNISYKYTCYACDYH   27 (98)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~c~~C~~~   27 (98)
                      |.|+.|++....  ...|.|.+|+..
T Consensus         1 ~~C~~C~~~~~~--~~~Y~C~~Cdf~   24 (30)
T PF07649_consen    1 FRCDACGKPIDG--GWFYRCSECDFD   24 (30)
T ss_dssp             ---TTTS----S----EEE-TTT---
T ss_pred             CcCCcCCCcCCC--CceEECccCCCc
Confidence            467788776554  567889888654

The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=93.13  E-value=0.016  Score=35.61  Aligned_cols=53  Identities=36%  Similarity=0.667  Sum_probs=46.8

Q ss_pred             CceecCCCccccccchhHHHHHH--hhCCC--CCeecC--cCcccccChHHHHHHHhhh
Q psy3500          45 KPYKCEYCAYSCTQSSALKIHER--KHTGD--KPYICQ--QCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        45 ~~~~c~~c~~~~~~~~~l~~h~~--~~~~~--~~~~C~--~C~~~f~~~~~l~~H~~~h   97 (98)
                      .+..|..|...|.....+..|.+  .|.++  +++.|+  .|++.|.+...+..|..+|
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  346 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLH  346 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccc
Confidence            36788899999999999999999  89999  999999  7999999998888887665

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=92.83  E-value=0.068  Score=22.39  Aligned_cols=10  Identities=30%  Similarity=0.800  Sum_probs=5.1

Q ss_pred             eecCCCCCcC
Q psy3500          19 YTCYACDYHT   28 (98)
Q Consensus        19 ~~c~~C~~~~   28 (98)
                      |.|..||..|
T Consensus         6 y~C~~Cg~~f   15 (42)
T PF09723_consen    6 YRCEECGHEF   15 (42)
T ss_pred             EEeCCCCCEE
Confidence            4555555444

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=92.76  E-value=0.059  Score=23.42  Aligned_cols=11  Identities=27%  Similarity=0.848  Sum_probs=5.8

Q ss_pred             ceecCCCCCcC
Q psy3500          18 KYTCYACDYHT   28 (98)
Q Consensus        18 ~~~c~~C~~~~   28 (98)
                      .|.|..|+..+
T Consensus         6 ~Y~C~~Cg~~~   16 (49)
T COG1996           6 EYKCARCGREV   16 (49)
T ss_pred             EEEhhhcCCee
Confidence            45555555544

>PRK09678 DNA-binding transcriptional regulator; Provisional

Probab=92.65  E-value=0.093  Score=24.79  Aligned_cols=30  Identities=20%  Similarity=0.539  Sum_probs=17.2

Q ss_pred             CCCCCCCCCccC---------CCCCCceecC--CCCCcCCC
Q psy3500           1 MYHCKTCSTLSR---------PNISYKYTCY--ACDYHTLM   30 (98)
Q Consensus         1 ~~~c~~c~~~~~---------~~~~~~~~c~--~C~~~~~~   30 (98)
                      |+.|+.||.-.+         ...+.-+.|.  +||.+|..
T Consensus         1 mm~CP~Cg~~a~irtSr~~s~~~~~~Y~qC~N~eCg~tF~t   41 (72)
T PRK09678          1 MFHCPLCQHAAHARTSRYITDTTKERYHQCQNVNCSATFIT   41 (72)
T ss_pred             CccCCCCCCccEEEEChhcChhhheeeeecCCCCCCCEEEE
Confidence            567888885331         1223346676  77776654

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=92.54  E-value=0.13  Score=26.96  Aligned_cols=26  Identities=4%  Similarity=-0.212  Sum_probs=12.5

Q ss_pred             CCCCCCccCCCCCCceecCCCCCcCC
Q psy3500           4 CKTCSTLSRPNISYKYTCYACDYHTL   29 (98)
Q Consensus         4 c~~c~~~~~~~~~~~~~c~~C~~~~~   29 (98)
                      |+.||+-|=..++-|-.|+.||..|.
T Consensus        12 Cp~cg~kFYDLnk~p~vcP~cg~~~~   37 (129)
T TIGR02300        12 CPNTGSKFYDLNRRPAVSPYTGEQFP   37 (129)
T ss_pred             CCCcCccccccCCCCccCCCcCCccC
Confidence            44555444444444444555554443

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=92.51  E-value=0.23  Score=27.16  Aligned_cols=34  Identities=15%  Similarity=0.393  Sum_probs=25.5

Q ss_pred             CCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCccccc
Q psy3500          43 GEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS   85 (98)
Q Consensus        43 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~   85 (98)
                      ...-|.|+.|+..|+...++.         ..|.|+.||....
T Consensus       106 ~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~L~  139 (158)
T TIGR00373       106 NNMFFICPNMCVRFTFNEAME---------LNFTCPRCGAMLD  139 (158)
T ss_pred             CCCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCEee
Confidence            445688999998888877663         2599999997643

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>KOG2186|consensus

Probab=92.50  E-value=0.13  Score=30.14  Aligned_cols=49  Identities=22%  Similarity=0.471  Sum_probs=35.0

Q ss_pred             eecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhC
Q psy3500          19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHT   70 (98)
Q Consensus        19 ~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~   70 (98)
                      |.|..||....-+. +..|+..-.+ .-|.|..|+..|.. .....|..--+
T Consensus         4 FtCnvCgEsvKKp~-vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~kCIT   52 (276)
T KOG2186|consen    4 FTCNVCGESVKKPQ-VEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTKCIT   52 (276)
T ss_pred             Eehhhhhhhccccc-hHHHHHhccC-CeeEEeeccccccc-chhhhhhhhcc
Confidence            78999998776544 5668765444 46899999999988 45677765333

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=92.33  E-value=0.095  Score=23.33  Aligned_cols=25  Identities=20%  Similarity=0.450  Sum_probs=18.4

Q ss_pred             CCCCCeecCcCcccccChHHHHHHH
Q psy3500          70 TGDKPYICQQCRDTFSSLYLFRNHL   94 (98)
Q Consensus        70 ~~~~~~~C~~C~~~f~~~~~l~~H~   94 (98)
                      -|+.-+.|+.|+..|.......+|.
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHV   37 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHV   37 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHh
Confidence            4566678888888888777777774

>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines

Probab=92.18  E-value=0.2  Score=19.24  Aligned_cols=22  Identities=23%  Similarity=0.605  Sum_probs=16.7

Q ss_pred             CCCCCCCCccCCCCCCceecCCCC
Q psy3500           2 YHCKTCSTLSRPNISYKYTCYACD   25 (98)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~c~~C~   25 (98)
                      |.|+.|++......  -|.|..|.
T Consensus         1 ~~C~~C~~~~~~~~--~Y~C~~c~   22 (30)
T PF03107_consen    1 FWCDVCRRKIDGFY--FYHCSECC   22 (30)
T ss_pred             CCCCCCCCCcCCCE--eEEeCCCC
Confidence            67888887766544  78888887

The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=91.69  E-value=0.11  Score=22.66  Aligned_cols=12  Identities=33%  Similarity=0.717  Sum_probs=7.5

Q ss_pred             ceecCCCCCcCC
Q psy3500          18 KYTCYACDYHTL   29 (98)
Q Consensus        18 ~~~c~~C~~~~~   29 (98)
                      .|.|..|+..|.
T Consensus         5 ey~C~~Cg~~fe   16 (52)
T TIGR02605         5 EYRCTACGHRFE   16 (52)
T ss_pred             EEEeCCCCCEeE
Confidence            466667766664

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=91.47  E-value=0.12  Score=21.13  Aligned_cols=10  Identities=30%  Similarity=0.766  Sum_probs=5.4

Q ss_pred             eecCCCCCcC
Q psy3500          19 YTCYACDYHT   28 (98)
Q Consensus        19 ~~c~~C~~~~   28 (98)
                      |.|..|+..|
T Consensus         6 y~C~~Cg~~f   15 (41)
T smart00834        6 YRCEDCGHTF   15 (41)
T ss_pred             EEcCCCCCEE
Confidence            4555555544

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PHA00626 hypothetical protein

Probab=91.43  E-value=0.32  Score=21.74  Aligned_cols=13  Identities=31%  Similarity=0.889  Sum_probs=7.6

Q ss_pred             CceecCCCCCcCC
Q psy3500          17 YKYTCYACDYHTL   29 (98)
Q Consensus        17 ~~~~c~~C~~~~~   29 (98)
                      -.|+|+.|+..|.
T Consensus        22 nrYkCkdCGY~ft   34 (59)
T PHA00626         22 DDYVCCDCGYNDS   34 (59)
T ss_pred             cceEcCCCCCeec
Confidence            3466666666554

>smart00661 RPOL9 RNA polymerase subunit 9

Probab=91.36  E-value=0.25  Score=21.37  Aligned_cols=25  Identities=24%  Similarity=0.837  Sum_probs=13.8

Q ss_pred             CCCCCCccCCCCC---CceecCCCCCcC
Q psy3500           4 CKTCSTLSRPNIS---YKYTCYACDYHT   28 (98)
Q Consensus         4 c~~c~~~~~~~~~---~~~~c~~C~~~~   28 (98)
                      |+.||.+......   ..+.|+.|+..+
T Consensus         3 Cp~Cg~~l~~~~~~~~~~~vC~~Cg~~~   30 (52)
T smart00661        3 CPKCGNMLIPKEGKEKRRFVCRKCGYEE   30 (52)
T ss_pred             CCCCCCccccccCCCCCEEECCcCCCeE
Confidence            6677765433221   256677777544

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=91.08  E-value=0.053  Score=31.04  Aligned_cols=12  Identities=17%  Similarity=0.642  Sum_probs=9.0

Q ss_pred             eecCcCcccccC
Q psy3500          75 YICQQCRDTFSS   86 (98)
Q Consensus        75 ~~C~~C~~~f~~   86 (98)
                      +.|+.||.++..
T Consensus        49 ~vCP~CgyA~~~   60 (214)
T PF09986_consen   49 WVCPHCGYAAFE   60 (214)
T ss_pred             EECCCCCCcccc
Confidence            579999977653

>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]

Probab=91.05  E-value=0.12  Score=27.22  Aligned_cols=25  Identities=36%  Similarity=0.768  Sum_probs=19.0

Q ss_pred             CCCCCCCC-ccCCCCCCceecCCCCCcC
Q psy3500           2 YHCKTCST-LSRPNISYKYTCYACDYHT   28 (98)
Q Consensus         2 ~~c~~c~~-~~~~~~~~~~~c~~C~~~~   28 (98)
                      .+|+.||. +|...|+.  -|+.|+..+
T Consensus        29 ~hCp~Cg~PLF~KdG~v--~CPvC~~~~   54 (131)
T COG1645          29 KHCPKCGTPLFRKDGEV--FCPVCGYRE   54 (131)
T ss_pred             hhCcccCCcceeeCCeE--ECCCCCceE
Confidence            47899997 88877775  499998544

>KOG2893|consensus

Probab=90.93  E-value=0.087  Score=30.66  Aligned_cols=43  Identities=23%  Similarity=0.463  Sum_probs=33.2

Q ss_pred             eecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHH
Q psy3500          19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIH   65 (98)
Q Consensus        19 ~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h   65 (98)
                      -+|=.|++.|.....|..|++    .+.|.|.+|-+.+.+...|..|
T Consensus        11 pwcwycnrefddekiliqhqk----akhfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   11 PWCWYCNREFDDEKILIQHQK----AKHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             ceeeecccccchhhhhhhhhh----hccceeeeehhhhccCCCceee
Confidence            357789999998888777664    4679999998877766666666

>TIGR01206 lysW lysine biosynthesis protein LysW

Probab=90.91  E-value=0.25  Score=21.97  Aligned_cols=26  Identities=15%  Similarity=0.423  Sum_probs=13.0

Q ss_pred             CCCCCCCCccCCCC---CCceecCCCCCc
Q psy3500           2 YHCKTCSTLSRPNI---SYKYTCYACDYH   27 (98)
Q Consensus         2 ~~c~~c~~~~~~~~---~~~~~c~~C~~~   27 (98)
                      |+|+.||..+.-..   .....|+.||..
T Consensus         3 ~~CP~CG~~iev~~~~~GeiV~Cp~CGae   31 (54)
T TIGR01206         3 FECPDCGAEIELENPELGELVICDECGAE   31 (54)
T ss_pred             cCCCCCCCEEecCCCccCCEEeCCCCCCE
Confidence            56777776543211   123456666543

This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=90.68  E-value=0.38  Score=26.84  Aligned_cols=33  Identities=21%  Similarity=0.515  Sum_probs=23.7

Q ss_pred             CCceecCCCccccccchhHHHHHHhhCCCCCeecCcCccccc
Q psy3500          44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS   85 (98)
Q Consensus        44 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~   85 (98)
                      ..-|.|+.|+..|+...++.         ..|.|+.||....
T Consensus       115 ~~~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~L~  147 (178)
T PRK06266        115 NMFFFCPNCHIRFTFDEAME---------YGFRCPQCGEMLE  147 (178)
T ss_pred             CCEEECCCCCcEEeHHHHhh---------cCCcCCCCCCCCe
Confidence            34588999988887776542         2589999987543

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=90.54  E-value=0.27  Score=17.76  Aligned_cols=20  Identities=20%  Similarity=0.723  Sum_probs=11.9

Q ss_pred             CCCCCCccCCCCCCceecCCCCC
Q psy3500           4 CKTCSTLSRPNISYKYTCYACDY   26 (98)
Q Consensus         4 c~~c~~~~~~~~~~~~~c~~C~~   26 (98)
                      |+.||.........   |+.||.
T Consensus         2 Cp~CG~~~~~~~~f---C~~CG~   21 (23)
T PF13240_consen    2 CPNCGAEIEDDAKF---CPNCGT   21 (23)
T ss_pred             CcccCCCCCCcCcc---hhhhCC
Confidence            66777766554433   666664

>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center

Probab=90.51  E-value=0.31  Score=21.32  Aligned_cols=13  Identities=31%  Similarity=0.989  Sum_probs=8.8

Q ss_pred             CCCCCCCCCccCC
Q psy3500           1 MYHCKTCSTLSRP   13 (98)
Q Consensus         1 ~~~c~~c~~~~~~   13 (98)
                      .|+|..||--+..
T Consensus         1 ~y~C~~CgyiYd~   13 (50)
T cd00730           1 KYECRICGYIYDP   13 (50)
T ss_pred             CcCCCCCCeEECC
Confidence            3778888865553

Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.

>KOG2186|consensus

Probab=90.34  E-value=0.3  Score=28.74  Aligned_cols=46  Identities=20%  Similarity=0.509  Sum_probs=30.7

Q ss_pred             CCCCCCCCccC-CCCC--------CceecCCCCCcCCCHHHHHHHHHHhcCCCcee
Q psy3500           2 YHCKTCSTLSR-PNIS--------YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYK   48 (98)
Q Consensus         2 ~~c~~c~~~~~-~~~~--------~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~   48 (98)
                      |.|+.||..-+ +..+        .-|.|-.|+..|-. ..+..|...-+...-|.
T Consensus         4 FtCnvCgEsvKKp~vekH~srCrn~~fSCIDC~k~F~~-~sYknH~kCITEaQKYg   58 (276)
T KOG2186|consen    4 FTCNVCGESVKKPQVEKHMSRCRNAYFSCIDCGKTFER-VSYKNHTKCITEAQKYG   58 (276)
T ss_pred             EehhhhhhhccccchHHHHHhccCCeeEEeeccccccc-chhhhhhhhcchHHHhh
Confidence            78999997543 2111        45889999999977 66777877655443333

>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional

Probab=90.22  E-value=0.17  Score=26.92  Aligned_cols=17  Identities=12%  Similarity=0.218  Sum_probs=11.5

Q ss_pred             CCCceecCCCCCcCCCH
Q psy3500          15 ISYKYTCYACDYHTLMS   31 (98)
Q Consensus        15 ~~~~~~c~~C~~~~~~~   31 (98)
                      ....+.|..||..|...
T Consensus        67 ~p~~~~C~~CG~~~~~~   83 (135)
T PRK03824         67 EEAVLKCRNCGNEWSLK   83 (135)
T ss_pred             cceEEECCCCCCEEecc
Confidence            34567888888776543

>PF12773 DZR: Double zinc ribbon

Probab=89.99  E-value=0.48  Score=20.34  Aligned_cols=23  Identities=22%  Similarity=0.598  Sum_probs=12.3

Q ss_pred             CCCCCCccCCCCCCceecCCCCCcCC
Q psy3500           4 CKTCSTLSRPNISYKYTCYACDYHTL   29 (98)
Q Consensus         4 c~~c~~~~~~~~~~~~~c~~C~~~~~   29 (98)
                      |+.||+........   |..|+..+.
T Consensus         1 Cp~Cg~~~~~~~~f---C~~CG~~l~   23 (50)
T PF12773_consen    1 CPHCGTPNPDDAKF---CPHCGTPLP   23 (50)
T ss_pred             CCCcCCcCCccccC---ChhhcCChh
Confidence            55666664443332   666665543

>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]

Probab=89.86  E-value=0.25  Score=24.35  Aligned_cols=11  Identities=18%  Similarity=0.634  Sum_probs=5.2

Q ss_pred             ceecCCCCCcC
Q psy3500          18 KYTCYACDYHT   28 (98)
Q Consensus        18 ~~~c~~C~~~~   28 (98)
                      |-.|..||..|
T Consensus        58 Pa~CkkCGfef   68 (97)
T COG3357          58 PARCKKCGFEF   68 (97)
T ss_pred             ChhhcccCccc
Confidence            34455555444

>PRK04023 DNA polymerase II large subunit; Validated

Probab=89.85  E-value=0.65  Score=32.71  Aligned_cols=21  Identities=24%  Similarity=0.709  Sum_probs=12.0

Q ss_pred             CCCCCCCCccCCCCCCceecCCCCCc
Q psy3500           2 YHCKTCSTLSRPNISYKYTCYACDYH   27 (98)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~c~~C~~~   27 (98)
                      ..|+.||+..     ..+.|+.||..
T Consensus       627 RfCpsCG~~t-----~~frCP~CG~~  647 (1121)
T PRK04023        627 RKCPSCGKET-----FYRRCPFCGTH  647 (1121)
T ss_pred             ccCCCCCCcC-----CcccCCCCCCC
Confidence            3567777653     33556666644

>PRK00432 30S ribosomal protein S27ae; Validated

Probab=89.65  E-value=0.33  Score=21.19  Aligned_cols=11  Identities=27%  Similarity=0.930  Sum_probs=6.7

Q ss_pred             ceecCCCcccc
Q psy3500          46 PYKCEYCAYSC   56 (98)
Q Consensus        46 ~~~c~~c~~~~   56 (98)
                      .+.|..|+.++
T Consensus        37 r~~C~~Cgyt~   47 (50)
T PRK00432         37 RWHCGKCGYTE   47 (50)
T ss_pred             cEECCCcCCEE
Confidence            46677776543

>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc

Probab=89.47  E-value=0.4  Score=20.40  Aligned_cols=24  Identities=29%  Similarity=0.772  Sum_probs=11.6

Q ss_pred             CCCCCCCCc--cCCCCCCceecCCCC
Q psy3500           2 YHCKTCSTL--SRPNISYKYTCYACD   25 (98)
Q Consensus         2 ~~c~~c~~~--~~~~~~~~~~c~~C~   25 (98)
                      ++|+.||..  +.-.....|+|..|.
T Consensus        19 ~~CP~Cg~~~~~~~~~~~~~~C~~C~   44 (46)
T PF12760_consen   19 FVCPHCGSTKHYRLKTRGRYRCKACR   44 (46)
T ss_pred             CCCCCCCCeeeEEeCCCCeEECCCCC
Confidence            456666642  112223456666654

It may be a zinc-binding beta ribbon domain that could bind DNA.

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=89.40  E-value=0.22  Score=29.39  Aligned_cols=88  Identities=18%  Similarity=0.314  Sum_probs=44.8

Q ss_pred             CCCCCCccCCCCCCceecCCCCCcCCCHHHHHHHHHH--hcCCCceecCCCccccccc------hhHHHHHHh----hCC
Q psy3500           4 CKTCSTLSRPNISYKYTCYACDYHTLMSEDMKKHMRK--HTGEKPYKCEYCAYSCTQS------SALKIHERK----HTG   71 (98)
Q Consensus         4 c~~c~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~--h~~~~~~~c~~c~~~~~~~------~~l~~h~~~----~~~   71 (98)
                      |-+|.+.-=..|..-|+|..|....-....+ .|+.+  ......|.|.-|++.=...      -.-..|.+.    ...
T Consensus       128 C~EC~R~vw~hGGrif~CsfC~~flCEDDQF-EHQAsCQvLe~E~~KC~SCNrlGq~sCLRCK~cfCddHvrrKg~ky~k  206 (314)
T PF06524_consen  128 CIECERGVWDHGGRIFKCSFCDNFLCEDDQF-EHQASCQVLESETFKCQSCNRLGQYSCLRCKICFCDDHVRRKGFKYEK  206 (314)
T ss_pred             eeeeecccccCCCeEEEeecCCCeeeccchh-hhhhhhhhhhcccccccccccccchhhhheeeeehhhhhhhccccccc
Confidence            3445554445666779999998655444333 34442  2233356666655421110      011123321    223


Q ss_pred             CCCeecCcCcccccChHHHHH
Q psy3500          72 DKPYICQQCRDTFSSLYLFRN   92 (98)
Q Consensus        72 ~~~~~C~~C~~~f~~~~~l~~   92 (98)
                      .+++.|+.|+........|..
T Consensus       207 ~k~~PCPKCg~et~eTkdLSm  227 (314)
T PF06524_consen  207 GKPIPCPKCGYETQETKDLSM  227 (314)
T ss_pred             CCCCCCCCCCCccccccccee
Confidence            468899999866555444443

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>PRK03681 hypA hydrogenase nickel incorporation protein; Validated

Probab=89.04  E-value=0.21  Score=25.76  Aligned_cols=11  Identities=18%  Similarity=0.459  Sum_probs=6.0

Q ss_pred             ceecCCCCCcC
Q psy3500          18 KYTCYACDYHT   28 (98)
Q Consensus        18 ~~~c~~C~~~~   28 (98)
                      ...|..|+..|
T Consensus        70 ~~~C~~Cg~~~   80 (114)
T PRK03681         70 ECWCETCQQYV   80 (114)
T ss_pred             EEEcccCCCee
Confidence            35566666543

>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional

Probab=88.94  E-value=0.23  Score=25.76  Aligned_cols=11  Identities=18%  Similarity=0.480  Sum_probs=6.1

Q ss_pred             ceecCCCCCcC
Q psy3500          18 KYTCYACDYHT   28 (98)
Q Consensus        18 ~~~c~~C~~~~   28 (98)
                      ...|..|+..|
T Consensus        71 ~~~C~~Cg~~~   81 (117)
T PRK00564         71 ELECKDCSHVF   81 (117)
T ss_pred             EEEhhhCCCcc
Confidence            35566666544

>smart00531 TFIIE Transcription initiation factor IIE

Probab=88.59  E-value=1.1  Score=24.19  Aligned_cols=37  Identities=24%  Similarity=0.564  Sum_probs=24.5

Q ss_pred             CCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccc
Q psy3500          44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTF   84 (98)
Q Consensus        44 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f   84 (98)
                      ..-|.|+.|+..|.....+..   ... +..|.|+.||...
T Consensus        97 ~~~Y~Cp~C~~~y~~~ea~~~---~d~-~~~f~Cp~Cg~~l  133 (147)
T smart00531       97 NAYYKCPNCQSKYTFLEANQL---LDM-DGTFTCPRCGEEL  133 (147)
T ss_pred             CcEEECcCCCCEeeHHHHHHh---cCC-CCcEECCCCCCEE
Confidence            345899999988886544322   111 3349999999765

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=88.11  E-value=0.5  Score=17.49  Aligned_cols=21  Identities=24%  Similarity=0.687  Sum_probs=10.5

Q ss_pred             CCCCCCCccCCCCCCceecCCCCC
Q psy3500           3 HCKTCSTLSRPNISYKYTCYACDY   26 (98)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~c~~C~~   26 (98)
                      .|+.||........   -|+.||.
T Consensus         4 ~Cp~Cg~~~~~~~~---fC~~CG~   24 (26)
T PF13248_consen    4 FCPNCGAEIDPDAK---FCPNCGA   24 (26)
T ss_pred             CCcccCCcCCcccc---cChhhCC
Confidence            46777773322222   1666654

>cd02249 ZZ Zinc finger, ZZ type

Probab=87.56  E-value=0.84  Score=19.37  Aligned_cols=21  Identities=29%  Similarity=0.907  Sum_probs=15.9

Q ss_pred             CCCCCCCCccCCCCCCceecCCCC
Q psy3500           2 YHCKTCSTLSRPNISYKYTCYACD   25 (98)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~c~~C~   25 (98)
                      |.|+.|++.+.   ...|.|..|.
T Consensus         1 ~~C~~C~~~i~---g~r~~C~~C~   21 (46)
T cd02249           1 YSCDGCLKPIV---GVRYHCLVCE   21 (46)
T ss_pred             CCCcCCCCCCc---CCEEECCCCC
Confidence            67999998432   3788998886

Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=87.51  E-value=0.55  Score=25.63  Aligned_cols=34  Identities=21%  Similarity=0.435  Sum_probs=21.8

Q ss_pred             CCCCCCCCcc---------CC--CCCCceecCCCCCcCCCHHHHH
Q psy3500           2 YHCKTCSTLS---------RP--NISYKYTCYACDYHTLMSEDMK   35 (98)
Q Consensus         2 ~~c~~c~~~~---------~~--~~~~~~~c~~C~~~~~~~~~l~   35 (98)
                      .+|+.||.-.         .+  .....+.|+.||.+|.....+.
T Consensus         1 m~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~~e~~~   45 (154)
T PRK00464          1 MRCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTTFERVE   45 (154)
T ss_pred             CcCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceEeEecc
Confidence            3699999532         12  1223489999999997664443

>KOG4173|consensus

Probab=87.47  E-value=0.19  Score=28.62  Aligned_cols=73  Identities=21%  Similarity=0.492  Sum_probs=45.3

Q ss_pred             eecCC--CCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHH----------hhCCCCCeec--CcCcccc
Q psy3500          19 YTCYA--CDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHER----------KHTGDKPYIC--QQCRDTF   84 (98)
Q Consensus        19 ~~c~~--C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~----------~~~~~~~~~C--~~C~~~f   84 (98)
                      +.|++  |-+.|........|...-.+   -.|..|.+.|.....|..|+.          ...|..-|+|  ..|+..|
T Consensus        80 ~~cqvagc~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KF  156 (253)
T KOG4173|consen   80 FACQVAGCCQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKF  156 (253)
T ss_pred             ccccccchHHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhh
Confidence            44543  33455555555555432222   268888888888887777764          2334445777  4588888


Q ss_pred             cChHHHHHHH
Q psy3500          85 SSLYLFRNHL   94 (98)
Q Consensus        85 ~~~~~l~~H~   94 (98)
                      ....+...|+
T Consensus       157 kT~r~RkdH~  166 (253)
T KOG4173|consen  157 KTSRDRKDHM  166 (253)
T ss_pred             hhhhhhhhHH
Confidence            8887777775

>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]

Probab=87.43  E-value=0.51  Score=29.92  Aligned_cols=30  Identities=13%  Similarity=0.344  Sum_probs=22.9

Q ss_pred             CCCCCCCccCCCCCCceecCCCCCcCCCHH
Q psy3500           3 HCKTCSTLSRPNISYKYTCYACDYHTLMSE   32 (98)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~c~~C~~~~~~~~   32 (98)
                      .|+.||...+..|..=|+|+-|+..+....
T Consensus       352 ~Cp~Cg~~m~S~G~~g~rC~kCg~~~~~~~  381 (421)
T COG1571         352 VCPRCGGRMKSAGRNGFRCKKCGTRARETL  381 (421)
T ss_pred             CCCccCCchhhcCCCCcccccccccCCccc
Confidence            588888887777776788888888776543

>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation

Probab=87.43  E-value=0.11  Score=26.76  Aligned_cols=13  Identities=15%  Similarity=0.311  Sum_probs=7.2

Q ss_pred             ceecCCCCCcCCC
Q psy3500          18 KYTCYACDYHTLM   30 (98)
Q Consensus        18 ~~~c~~C~~~~~~   30 (98)
                      ...|..|+..|..
T Consensus        70 ~~~C~~Cg~~~~~   82 (113)
T PF01155_consen   70 RARCRDCGHEFEP   82 (113)
T ss_dssp             EEEETTTS-EEEC
T ss_pred             cEECCCCCCEEec
Confidence            3566667666643

The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.

>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues

Probab=86.84  E-value=0.42  Score=18.54  Aligned_cols=22  Identities=18%  Similarity=0.421  Sum_probs=6.1

Q ss_pred             CCCCCCccCCCCCCceecCCCC
Q psy3500           4 CKTCSTLSRPNISYKYTCYACD   25 (98)
Q Consensus         4 c~~c~~~~~~~~~~~~~c~~C~   25 (98)
                      |+.|+..+.=...--+.|+.|+
T Consensus         5 Cp~C~se~~y~D~~~~vCp~C~   26 (30)
T PF08274_consen    5 CPLCGSEYTYEDGELLVCPECG   26 (30)
T ss_dssp             -TTT-----EE-SSSEEETTTT
T ss_pred             CCCCCCcceeccCCEEeCCccc
Confidence            4444443332233334444443

The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.

>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.77  E-value=0.51  Score=21.77  Aligned_cols=23  Identities=17%  Similarity=0.443  Sum_probs=6.4

Q ss_pred             CCCCCCccCCCCCCceecCCCCCc
Q psy3500           4 CKTCSTLSRPNISYKYTCYACDYH   27 (98)
Q Consensus         4 c~~c~~~~~~~~~~~~~c~~C~~~   27 (98)
                      |..|++.|.- ....+.|..||..
T Consensus        12 C~~C~~~F~~-~~rrhhCr~CG~~   34 (69)
T PF01363_consen   12 CMICGKKFSL-FRRRHHCRNCGRV   34 (69)
T ss_dssp             -TTT--B-BS-SS-EEE-TTT--E
T ss_pred             CcCcCCcCCC-ceeeEccCCCCCE
Confidence            4445555522 2334445555443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....

>KOG3507|consensus

Probab=86.75  E-value=0.34  Score=21.83  Aligned_cols=9  Identities=33%  Similarity=1.080  Sum_probs=4.8

Q ss_pred             ceecCCCcc
Q psy3500          46 PYKCEYCAY   54 (98)
Q Consensus        46 ~~~c~~c~~   54 (98)
                      ...|..||.
T Consensus        37 ~irCReCG~   45 (62)
T KOG3507|consen   37 VIRCRECGY   45 (62)
T ss_pred             cEehhhcch
Confidence            455555553

>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins

Probab=86.53  E-value=1.9  Score=19.79  Aligned_cols=14  Identities=14%  Similarity=0.800  Sum_probs=8.0

Q ss_pred             CceecCCCcccccc
Q psy3500          45 KPYKCEYCAYSCTQ   58 (98)
Q Consensus        45 ~~~~c~~c~~~~~~   58 (98)
                      ..+.|+.||.....
T Consensus        45 r~~~C~~Cg~~~~r   58 (69)
T PF07282_consen   45 RVFTCPNCGFEMDR   58 (69)
T ss_pred             ceEEcCCCCCEECc
Confidence            34666666655443

More information about these proteins can be found at Protein of the Month: Transposase [].

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.42  E-value=1.2  Score=18.56  Aligned_cols=21  Identities=19%  Similarity=0.404  Sum_probs=9.6

Q ss_pred             CeecCcCcccccC----hHHHHHHH
Q psy3500          74 PYICQQCRDTFSS----LYLFRNHL   94 (98)
Q Consensus        74 ~~~C~~C~~~f~~----~~~l~~H~   94 (98)
                      ...|..|++.+..    .+.|..|+
T Consensus        16 ~a~C~~C~~~~~~~~~~ts~l~~HL   40 (45)
T PF02892_consen   16 KAKCKYCGKVIKYSSGGTSNLKRHL   40 (45)
T ss_dssp             -EEETTTTEE-----SSTHHHHHHH
T ss_pred             eEEeCCCCeEEeeCCCcHHHHHHhh
Confidence            3556666655443    24566665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function

Probab=86.37  E-value=0.45  Score=25.16  Aligned_cols=26  Identities=15%  Similarity=0.356  Sum_probs=19.7

Q ss_pred             CCCCCCCCCccCCCC-CCceecCCCCC
Q psy3500           1 MYHCKTCSTLSRPNI-SYKYTCYACDY   26 (98)
Q Consensus         1 ~~~c~~c~~~~~~~~-~~~~~c~~C~~   26 (98)
                      |+.|-.||+.|.... +..--|+.||-
T Consensus         1 PH~Ct~Cg~~f~dgs~eil~GCP~CGg   27 (131)
T PF09845_consen    1 PHQCTKCGRVFEDGSKEILSGCPECGG   27 (131)
T ss_pred             CcccCcCCCCcCCCcHHHHccCcccCC
Confidence            789999999998655 44455888873

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=85.53  E-value=1.1  Score=16.65  Aligned_cols=19  Identities=26%  Similarity=0.513  Sum_probs=11.2

Q ss_pred             ecCcCcccccChHHHHHHHh
Q psy3500          76 ICQQCRDTFSSLYLFRNHLQ   95 (98)
Q Consensus        76 ~C~~C~~~f~~~~~l~~H~~   95 (98)
                      .|+.|++.+ ....+..|+.
T Consensus         3 ~CPiC~~~v-~~~~in~HLD   21 (26)
T smart00734        3 QCPVCFREV-PENLINSHLD   21 (26)
T ss_pred             cCCCCcCcc-cHHHHHHHHH
Confidence            466666665 4455666654

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=85.47  E-value=1.1  Score=19.97  Aligned_cols=25  Identities=16%  Similarity=0.410  Sum_probs=14.8

Q ss_pred             CCCCCCCccCCCCCCceecCCCCCcC
Q psy3500           3 HCKTCSTLSRPNISYKYTCYACDYHT   28 (98)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~c~~C~~~~   28 (98)
                      .|+.||+-|+..++. -.|++|+-.+
T Consensus         7 ~C~~Cg~~~~~~dDi-VvCp~Cgapy   31 (54)
T PF14446_consen    7 KCPVCGKKFKDGDDI-VVCPECGAPY   31 (54)
T ss_pred             cChhhCCcccCCCCE-EECCCCCCcc
Confidence            466777766665553 3566666443

>PRK05978 hypothetical protein; Provisional

Probab=85.38  E-value=0.82  Score=24.82  Aligned_cols=26  Identities=27%  Similarity=0.524  Sum_probs=13.3

Q ss_pred             CCCCCCC--ccCCCCCCceecCCCCCcC
Q psy3500           3 HCKTCST--LSRPNISYKYTCYACDYHT   28 (98)
Q Consensus         3 ~c~~c~~--~~~~~~~~~~~c~~C~~~~   28 (98)
                      .|+.||+  +|+--.+..-.|+.|+..|
T Consensus        35 rCP~CG~G~LF~g~Lkv~~~C~~CG~~~   62 (148)
T PRK05978         35 RCPACGEGKLFRAFLKPVDHCAACGEDF   62 (148)
T ss_pred             cCCCCCCCcccccccccCCCccccCCcc
Confidence            4666664  3443333444566666554

>COG4332 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.23  E-value=0.65  Score=26.00  Aligned_cols=27  Identities=26%  Similarity=0.647  Sum_probs=18.8

Q ss_pred             CCCCCCC--ccCCCCCC-------------ceecCCCCCcCC
Q psy3500           3 HCKTCST--LSRPNISY-------------KYTCYACDYHTL   29 (98)
Q Consensus         3 ~c~~c~~--~~~~~~~~-------------~~~c~~C~~~~~   29 (98)
                      .|+-||.  .|..+|..             -|+|..|+.++.
T Consensus        19 ~C~~Cg~kr~f~cSg~fRvNAq~K~LDvWlIYkC~~Cd~tWN   60 (203)
T COG4332          19 RCNSCGVKRAFTCSGKFRVNAQGKVLDVWLIYKCTHCDYTWN   60 (203)
T ss_pred             hCcccCCcceeeecCcEEEcCCCcEEEEEEEEEeeccCCccc
Confidence            4788884  45555542             399999998874

>KOG1146|consensus

Probab=84.87  E-value=0.19  Score=35.95  Aligned_cols=20  Identities=25%  Similarity=0.486  Sum_probs=13.2

Q ss_pred             cCcCcccccChHHHHHHHhh
Q psy3500          77 CQQCRDTFSSLYLFRNHLQS   96 (98)
Q Consensus        77 C~~C~~~f~~~~~l~~H~~~   96 (98)
                      |..|...|.....|..|+++
T Consensus      1331 c~~c~~~~~~~~alqihm~~ 1350 (1406)
T KOG1146|consen 1331 CLACEVLLSGREALQIHMRS 1350 (1406)
T ss_pred             chHHHhhcchhHHHHHHHHH
Confidence            66666666666666666653

>PF14353 CpXC: CpXC protein

Probab=84.39  E-value=1.1  Score=23.50  Aligned_cols=10  Identities=20%  Similarity=0.557  Sum_probs=6.3

Q ss_pred             CCCCCCCccC
Q psy3500           3 HCKTCSTLSR   12 (98)
Q Consensus         3 ~c~~c~~~~~   12 (98)
                      .|+.||..|.
T Consensus         3 tCP~C~~~~~   12 (128)
T PF14353_consen    3 TCPHCGHEFE   12 (128)
T ss_pred             CCCCCCCeeE
Confidence            4777776543

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=84.36  E-value=1.7  Score=18.14  Aligned_cols=26  Identities=15%  Similarity=0.226  Sum_probs=14.2

Q ss_pred             CCCCCCCccCCCCCCceecCCCCCcCCC
Q psy3500           3 HCKTCSTLSRPNISYKYTCYACDYHTLM   30 (98)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~c~~C~~~~~~   30 (98)
                      +|+.|-+.+  +.+.++.-..|+..|-.
T Consensus         1 ~C~~C~~~~--~~~~~~~l~~CgH~~C~   26 (44)
T PF14634_consen    1 HCNICFEKY--SEERRPRLTSCGHIFCE   26 (44)
T ss_pred             CCcCcCccc--cCCCCeEEcccCCHHHH
Confidence            366666666  33334555566666543

>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []

Probab=84.34  E-value=0.41  Score=20.65  Aligned_cols=10  Identities=30%  Similarity=0.992  Sum_probs=5.7

Q ss_pred             CCCCCCCCcc
Q psy3500           2 YHCKTCSTLS   11 (98)
Q Consensus         2 ~~c~~c~~~~   11 (98)
                      |+|..||.-+
T Consensus         2 y~C~~CgyvY   11 (47)
T PF00301_consen    2 YQCPVCGYVY   11 (47)
T ss_dssp             EEETTTSBEE
T ss_pred             cCCCCCCEEE
Confidence            5666666433

The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....

>KOG1280|consensus

Probab=84.32  E-value=2.3  Score=26.41  Aligned_cols=37  Identities=22%  Similarity=0.516  Sum_probs=23.7

Q ss_pred             CceecCCCCCcCCCHHHHHHHHHH-hcCC-CceecCCCc
Q psy3500          17 YKYTCYACDYHTLMSEDMKKHMRK-HTGE-KPYKCEYCA   53 (98)
Q Consensus        17 ~~~~c~~C~~~~~~~~~l~~h~~~-h~~~-~~~~c~~c~   53 (98)
                      ..|+|+.|+++--....+..|... |... -...|++|+
T Consensus        78 qSftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~icp~c~  116 (381)
T KOG1280|consen   78 QSFTCPYCGIMGFTERQFGTHVLSQHPEASTSVICPLCA  116 (381)
T ss_pred             ccccCCcccccccchhHHHHHhhhcCcccCcceeeeccc
Confidence            358888888877777777777764 3221 224566665

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=84.29  E-value=1.6  Score=19.31  Aligned_cols=41  Identities=20%  Similarity=0.499  Sum_probs=22.9

Q ss_pred             CceecCC--CccccccchhHHHHHHhhCCCCCeecCc----CcccccC
Q psy3500          45 KPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ----CRDTFSS   86 (98)
Q Consensus        45 ~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~C~~----C~~~f~~   86 (98)
                      .+..|+.  |...+. ...|..|....-..++..|+.    |...+..
T Consensus         8 ~~v~C~~~cc~~~i~-r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~   54 (60)
T PF02176_consen    8 RPVPCPNGCCNEMIP-RKELDDHLENECPKRPVPCPYSPYGCKERVPR   54 (60)
T ss_dssp             SEEE-TT--S-BEEE-CCCHHHHHHTTSTTSEEE-SS----S--EEEH
T ss_pred             CEeeCCCCCccccee-HHHHHHHHHccCCCCcEECCCCCCCCCCccch
Confidence            3456766  434343 456888888666667788888    7765543

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=83.92  E-value=1.7  Score=17.91  Aligned_cols=12  Identities=25%  Similarity=0.501  Sum_probs=7.7

Q ss_pred             ceecCCCCCcCC
Q psy3500          18 KYTCYACDYHTL   29 (98)
Q Consensus        18 ~~~c~~C~~~~~   29 (98)
                      -|.|..|+..+.
T Consensus        28 fy~C~~C~~~w~   39 (40)
T smart00440       28 FYVCTKCGHRWR   39 (40)
T ss_pred             EEEeCCCCCEeC
Confidence            377777776553

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

>PRK14559 putative protein serine/threonine phosphatase; Provisional

Probab=83.91  E-value=2.4  Score=28.68  Aligned_cols=25  Identities=24%  Similarity=0.564  Sum_probs=17.0

Q ss_pred             CCCCCCCCCccCCCCCCceecCCCCCcC
Q psy3500           1 MYHCKTCSTLSRPNISYKYTCYACDYHT   28 (98)
Q Consensus         1 ~~~c~~c~~~~~~~~~~~~~c~~C~~~~   28 (98)
                      |-.|+.||.......+.   |..||..+
T Consensus         1 M~~Cp~Cg~~n~~~akF---C~~CG~~l   25 (645)
T PRK14559          1 MLICPQCQFENPNNNRF---CQKCGTSL   25 (645)
T ss_pred             CCcCCCCCCcCCCCCcc---ccccCCCC
Confidence            45788898876655443   77777655

>smart00614 ZnF_BED BED zinc finger

Probab=83.90  E-value=1.1  Score=19.32  Aligned_cols=21  Identities=29%  Similarity=0.534  Sum_probs=11.1

Q ss_pred             eecCcCcccccCh-----HHHHHHHh
Q psy3500          75 YICQQCRDTFSSL-----YLFRNHLQ   95 (98)
Q Consensus        75 ~~C~~C~~~f~~~-----~~l~~H~~   95 (98)
                      -.|..|++.+...     +.|.+|++
T Consensus        19 a~C~~C~~~l~~~~~~gTs~L~rHl~   44 (50)
T smart00614       19 AKCKYCGKKLSRSSKGGTSNLRRHLR   44 (50)
T ss_pred             EEecCCCCEeeeCCCCCcHHHHHHHH
Confidence            3455555554332     45666665

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>COG1773 Rubredoxin [Energy production and conversion]

Probab=83.76  E-value=0.72  Score=20.60  Aligned_cols=12  Identities=25%  Similarity=0.930  Sum_probs=8.1

Q ss_pred             CCCCCCCCccCC
Q psy3500           2 YHCKTCSTLSRP   13 (98)
Q Consensus         2 ~~c~~c~~~~~~   13 (98)
                      |+|..||.-+..
T Consensus         4 ~~C~~CG~vYd~   15 (55)
T COG1773           4 WRCSVCGYVYDP   15 (55)
T ss_pred             eEecCCceEecc
Confidence            677777766653

>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional

Probab=83.70  E-value=0.57  Score=24.13  Aligned_cols=11  Identities=18%  Similarity=0.588  Sum_probs=6.3

Q ss_pred             ceecCCCCCcC
Q psy3500          18 KYTCYACDYHT   28 (98)
Q Consensus        18 ~~~c~~C~~~~   28 (98)
                      ...|..|+..|
T Consensus        70 ~~~C~~Cg~~~   80 (113)
T PRK12380         70 QAWCWDCSQVV   80 (113)
T ss_pred             EEEcccCCCEE
Confidence            35566666554

>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]

Probab=83.54  E-value=1.1  Score=27.47  Aligned_cols=24  Identities=33%  Similarity=0.498  Sum_probs=16.5

Q ss_pred             CeecCcCcccccChHHHHHHHhhh
Q psy3500          74 PYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        74 ~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      .|.|+.|...|-..-+.-.|...|
T Consensus       388 rY~Ce~CK~~FC~dCdvfiHe~Lh  411 (421)
T COG5151         388 RYQCELCKSTFCSDCDVFIHETLH  411 (421)
T ss_pred             ceechhhhhhhhhhhHHHHHHHHh
Confidence            588888888887666655555443

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=83.41  E-value=0.37  Score=25.57  Aligned_cols=13  Identities=23%  Similarity=0.567  Sum_probs=7.0

Q ss_pred             CceecCCCCCcCC
Q psy3500          17 YKYTCYACDYHTL   29 (98)
Q Consensus        17 ~~~~c~~C~~~~~   29 (98)
                      +-|+|..|..+..
T Consensus        79 ~lYeCnIC~etS~   91 (140)
T PF05290_consen   79 KLYECNICKETSA   91 (140)
T ss_pred             CceeccCcccccc
Confidence            4566666655443

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=83.14  E-value=0.87  Score=19.01  Aligned_cols=25  Identities=16%  Similarity=0.445  Sum_probs=11.7

Q ss_pred             CCCCCCCCccC--CCCCCceecCCCCC
Q psy3500           2 YHCKTCSTLSR--PNISYKYTCYACDY   26 (98)
Q Consensus         2 ~~c~~c~~~~~--~~~~~~~~c~~C~~   26 (98)
                      |+|+.||....  ....-.+.|+.||.
T Consensus         1 m~Cp~Cg~~~~~~D~~~g~~vC~~CG~   27 (43)
T PF08271_consen    1 MKCPNCGSKEIVFDPERGELVCPNCGL   27 (43)
T ss_dssp             ESBTTTSSSEEEEETTTTEEEETTT-B
T ss_pred             CCCcCCcCCceEEcCCCCeEECCCCCC
Confidence            45666665321  22223346666654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.

>TIGR00100 hypA hydrogenase nickel insertion protein HypA

Probab=83.06  E-value=0.66  Score=23.97  Aligned_cols=12  Identities=17%  Similarity=0.465  Sum_probs=6.9

Q ss_pred             ceecCCCCCcCC
Q psy3500          18 KYTCYACDYHTL   29 (98)
Q Consensus        18 ~~~c~~C~~~~~   29 (98)
                      ...|..|+..|.
T Consensus        70 ~~~C~~Cg~~~~   81 (115)
T TIGR00100        70 ECECEDCSEEVS   81 (115)
T ss_pred             EEEcccCCCEEe
Confidence            356666665553

In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.

>KOG2785|consensus

Probab=82.83  E-value=1.7  Score=27.30  Aligned_cols=77  Identities=19%  Similarity=0.352  Sum_probs=41.0

Q ss_pred             eecCCCCCcCCCHHHHHHHHHH--hc---CCCc-eecCCCccccccchhHHHHHH---hhCCCCCeecCcCcccccChHH
Q psy3500          19 YTCYACDYHTLMSEDMKKHMRK--HT---GEKP-YKCEYCAYSCTQSSALKIHER---KHTGDKPYICQQCRDTFSSLYL   89 (98)
Q Consensus        19 ~~c~~C~~~~~~~~~l~~h~~~--h~---~~~~-~~c~~c~~~~~~~~~l~~h~~---~~~~~~~~~C~~C~~~f~~~~~   89 (98)
                      |+|..|...|........|+++  |.   .++- -..++....|........-..   ...++-++.|..|.+.|.....
T Consensus         4 ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~a   83 (390)
T KOG2785|consen    4 FTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPKA   83 (390)
T ss_pred             ceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChhh
Confidence            6788888888887777777764  21   1111 112222233333221111111   1233446778888888887777


Q ss_pred             HHHHHh
Q psy3500          90 FRNHLQ   95 (98)
Q Consensus        90 l~~H~~   95 (98)
                      ...|+.
T Consensus        84 ~~~hl~   89 (390)
T KOG2785|consen   84 HENHLK   89 (390)
T ss_pred             HHHHHH
Confidence            666654

>PRK14714 DNA polymerase II large subunit; Provisional

Probab=82.66  E-value=2.3  Score=31.00  Aligned_cols=21  Identities=29%  Similarity=0.702  Sum_probs=11.1

Q ss_pred             CCCCCCCCccCCCCCCceecCCCCCc
Q psy3500           2 YHCKTCSTLSRPNISYKYTCYACDYH   27 (98)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~c~~C~~~   27 (98)
                      +.|+.||.....     ..|+.||..
T Consensus       668 rkCPkCG~~t~~-----~fCP~CGs~  688 (1337)
T PRK14714        668 RRCPSCGTETYE-----NRCPDCGTH  688 (1337)
T ss_pred             EECCCCCCcccc-----ccCcccCCc
Confidence            467777764211     146666543

>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length

Probab=81.82  E-value=1.2  Score=24.16  Aligned_cols=8  Identities=25%  Similarity=0.746  Sum_probs=4.2

Q ss_pred             eecCCCCC
Q psy3500          19 YTCYACDY   26 (98)
Q Consensus        19 ~~c~~C~~   26 (98)
                      |.|..||.
T Consensus       113 l~C~~Cg~  120 (146)
T PF07295_consen  113 LVCENCGH  120 (146)
T ss_pred             EecccCCC
Confidence            55555554

Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.

>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type

Probab=81.65  E-value=2.1  Score=18.50  Aligned_cols=22  Identities=27%  Similarity=0.866  Sum_probs=15.3

Q ss_pred             CCCCCCCCccCCCCCCceecCCCC
Q psy3500           2 YHCKTCSTLSRPNISYKYTCYACD   25 (98)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~c~~C~   25 (98)
                      |.|+.|+..-  .....|.|..|.
T Consensus         1 y~Cd~C~~~p--I~G~R~~C~~C~   22 (48)
T cd02341           1 FKCDSCGIEP--IPGTRYHCSECD   22 (48)
T ss_pred             CCCCCCCCCc--cccceEECCCCC
Confidence            6788888732  225678888886

Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer

Probab=80.77  E-value=1.1  Score=17.97  Aligned_cols=24  Identities=17%  Similarity=0.407  Sum_probs=9.2

Q ss_pred             CCCCCCCccCCCCC-CceecCCCCC
Q psy3500           3 HCKTCSTLSRPNIS-YKYTCYACDY   26 (98)
Q Consensus         3 ~c~~c~~~~~~~~~-~~~~c~~C~~   26 (98)
                      +|.+||+.|-.+.- ..|.+.+|++
T Consensus         5 ~C~eC~~~f~dSyL~~~F~~~VCD~   29 (34)
T PF01286_consen    5 KCDECGKPFMDSYLLNNFDLPVCDK   29 (34)
T ss_dssp             E-TTT--EES-SSCCCCTS-S--TT
T ss_pred             hHhHhCCHHHHHHHHHhCCcccccc
Confidence            46777777665443 2455555543

Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.

>KOG4167|consensus

Probab=80.60  E-value=0.38  Score=32.57  Aligned_cols=25  Identities=20%  Similarity=0.562  Sum_probs=22.0

Q ss_pred             CeecCcCcccccChHHHHHHHhhhC
Q psy3500          74 PYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        74 ~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      -|.|.+|++.|..--.+..|+++|.
T Consensus       792 iFpCreC~kvF~KiKSrNAHMK~Hr  816 (907)
T KOG4167|consen  792 IFPCRECGKVFFKIKSRNAHMKTHR  816 (907)
T ss_pred             eeehHHHHHHHHHHhhhhHHHHHHH
Confidence            4899999999998888999998873

>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA

Probab=80.41  E-value=1.5  Score=22.46  Aligned_cols=29  Identities=17%  Similarity=0.348  Sum_probs=20.3

Q ss_pred             CCCCCCCccCCCCCCceecCCCCCcCCCH
Q psy3500           3 HCKTCSTLSRPNISYKYTCYACDYHTLMS   31 (98)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~c~~C~~~~~~~   31 (98)
                      .|+.|+..+.-....-|.|++|+..+...
T Consensus         4 ~CP~C~seytY~dg~~~iCpeC~~EW~~~   32 (109)
T TIGR00686         4 PCPKCNSEYTYHDGTQLICPSCLYEWNEN   32 (109)
T ss_pred             cCCcCCCcceEecCCeeECcccccccccc
Confidence            47777777765555568888888777544

The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).

>smart00154 ZnF_AN1 AN1-like Zinc finger

Probab=80.40  E-value=0.87  Score=18.72  Aligned_cols=11  Identities=27%  Similarity=0.899  Sum_probs=6.7

Q ss_pred             CCCCCCCCCcc
Q psy3500           1 MYHCKTCSTLS   11 (98)
Q Consensus         1 ~~~c~~c~~~~   11 (98)
                      ||+|+.|+..|
T Consensus        12 ~f~C~~C~~~F   22 (39)
T smart00154       12 GFKCRHCGNLF   22 (39)
T ss_pred             CeECCccCCcc
Confidence            46666666554

Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.

>PRK10220 hypothetical protein; Provisional

Probab=80.03  E-value=2.1  Score=21.97  Aligned_cols=29  Identities=21%  Similarity=0.370  Sum_probs=20.0

Q ss_pred             CCCCCCCccCCCCCCceecCCCCCcCCCH
Q psy3500           3 HCKTCSTLSRPNISYKYTCYACDYHTLMS   31 (98)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~c~~C~~~~~~~   31 (98)
                      .|+.|+..+.-...-.|.|++|+.-+...
T Consensus         5 ~CP~C~seytY~d~~~~vCpeC~hEW~~~   33 (111)
T PRK10220          5 HCPKCNSEYTYEDNGMYICPECAHEWNDA   33 (111)
T ss_pred             cCCCCCCcceEcCCCeEECCcccCcCCcc
Confidence            47777777765555568888888766544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	98
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		8e-15
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		7e-14
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		3e-10
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		9e-10
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		1e-09
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		1e-09
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		2e-09
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		2e-09
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		2e-09
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		3e-09
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		3e-09
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		3e-09
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		3e-09
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		5e-09
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		8e-09
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		1e-08
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		3e-08
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		6e-08
2cot_A	77	Solution Structure Of The First And Second Zf-C2h2		6e-08
2gli_A	155	Five-Finger GliDNA COMPLEX Length = 155		1e-07
2rpc_A	155	Solution Structure Of The Tandem Zf-C2h2 Domains Fr		3e-07
1x6e_A	72	Solution Structures Of The C2h2 Type Zinc Finger Do		8e-07
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		3e-06
3uk3_C	57	Crystal Structure Of Znf217 Bound To Dna Length = 5		5e-06
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		1e-05
2lce_A	74	Chemical Shift Assignment Of Hr4436b From Homo Sapi		1e-05
1f2i_G	73	Cocrystal Structure Of Selected Zinc Finger Dimer B		5e-05
2yta_A	41	Solution Structure Of C2h2 Type Zinc Finger Domain		6e-05
2lt7_A	133	Solution Nmr Structure Of Kaiso Zinc Finger Dna Bin		1e-04
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		2e-04
2en1_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		2e-04
2ysv_A	42	Solution Structure Of C2h2 Type Zinc Finger Domain		3e-04
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		6e-04
2ytr_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		7e-04
1llm_C	88	Crystal Structure Of A Zif23-Gcn4 Chimera Bound To		7e-04
2yth_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		8e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 47/79 (59%)
Query: 19  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
           Y C  C       +D+ +H R HTGEKPYKC  C  S +Q + L+ H+R HTG+KPY C 
Sbjct: 50  YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACP 109
Query: 79  QCRDTFSSLYLFRNHLQSH 97
           +C  +FS L   R H ++H
Sbjct: 110 ECGKSFSQLAHLRAHQRTH 128

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 47/79 (59%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
          Y C  C      S +++KH R HTGEKPYKC  C  S +QSS L+ H+R HTG+KPY C 
Sbjct: 5  YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 79 QCRDTFSSLYLFRNHLQSH 97
          +C  +FS       H ++H
Sbjct: 65 ECGKSFSRSDHLSRHQRTH 83

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 69
          + RP   Y     +CD       ++  H+R HTG+KP++C  C  + +Q ++L  H R H
Sbjct: 1  MERP---YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTH 57
Query: 70 TGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          TG+KP+ C  C   F++L+    H + H
Sbjct: 58 TGEKPFACDICGRKFATLHTRTRHTKIH 85

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 69
          + RP   Y     +CD       ++  H+R HTG+KP++C  C  + +Q + L  H R H
Sbjct: 1  MERP---YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTH 57
Query: 70 TGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          TG+KP+ C  C   F++L+    H + H
Sbjct: 58 TGEKPFACDICGRKFATLHTRDRHTKIH 85

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 31 SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLY 88
          S  +K H+R HTGEKPY C++  C +   +S  L  H RKHTG +P+ CQ+C   FS   
Sbjct: 21 SSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSD 80
Query: 89 LFRNHLQSH 97
              H++ H
Sbjct: 81 HLALHMKRH 89

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 31 SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLY 88
          S  +K H+R HTGEKPY C++  C +   +S  L  H RKHTG +P+ CQ+C   FS   
Sbjct: 20 SSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSD 79
Query: 89 LFRNHLQSH 97
              H++ H
Sbjct: 80 HLALHMKRH 88

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 43/82 (52%)
Query: 16 SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
          S  + C  C       + +K HMR HTG KPYKC+ C Y+   SS+L  H R H+ ++P+
Sbjct: 6  SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF 65
Query: 76 ICQQCRDTFSSLYLFRNHLQSH 97
           CQ C     +      HL+SH
Sbjct: 66 KCQICPYASRNSSQLTVHLRSH 87

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 69
          + RP   Y     +CD     S D+ +H+R HTG+KP++C  C  + ++S  L  H R H
Sbjct: 1  MERP---YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
Query: 70 TGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          TG+KP+ C  C   F+     + H + H
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTKIH 85

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 34 MKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFR 91
          ++ H RKHTGEKPY+C++  C    ++S  LK H+R+HTG KP+ C+ C+  FS     +
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK 83
Query: 92 NHLQSH 97
           H ++H
Sbjct: 84 THTRTH 89

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 23 ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD 82
          +CD     S+++ +H+R HTG+KP++C  C  + ++S  L  H R HTG+KP+ C  C  
Sbjct: 10 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 69
Query: 83 TFSSLYLFRNHLQSH 97
           F+     + H + H
Sbjct: 70 KFARSDERKRHTKIH 84

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 69
          + RP   Y     +CD     S+++ +H+R HTG+KP++C  C  + ++S  L  H R H
Sbjct: 1  MERP---YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
Query: 70 TGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          TG+KP+ C  C   F+     + H + H
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTKIH 85

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 23 ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD 82
          +CD     S+++ +H+R HTG+KP++C  C  + ++S  L  H R HTG+KP+ C  C  
Sbjct: 11 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 83 TFSSLYLFRNHLQSH 97
           F+     + H + H
Sbjct: 71 KFARSDERKRHTKIH 85

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 8  STLSRPNISYKYTCYACDYHT-----LMSEDMKKHMRKHTGEKPYKC--EYCAYSCTQSS 60
          S  S P++  +   Y CDY         S  +K H+R HTGEKPYKC  E C +   +S 
Sbjct: 3  SGSSGPDLEKRRIHY-CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSD 61
Query: 61 ALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
           L  H RKHTG KP+ C  C  +FS       H++ H
Sbjct: 62 ELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 69
          + RP   Y     +CD     S ++ +H+R HTG+KP++C  C  + ++S  L  H R H
Sbjct: 1  MERP---YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
Query: 70 TGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          TG+KP+ C  C   F+     + H + H
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTKIH 85

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 69
          + RP   Y     +CD     S ++ +H+R HTG+KP++C  C  + ++S  L  H R H
Sbjct: 1  MERP---YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
Query: 70 TGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          TG+KP+ C  C   F+     + H + H
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTKIH 85

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 69
          + RP   Y     +CD     S  + +H+R HTG+KP++C  C  + ++S  L  H R H
Sbjct: 1  MERP---YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
Query: 70 TGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          TG+KP+ C  C   F+     + H + H
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTKIH 85

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 19  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYI 76
           + C  C    + S  +K+H   HTGEKP++C  E C    +    L+ H R HTGD+PY+
Sbjct: 35  HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV 94
Query: 77  C--QQCRDTFSSLYLFRNHLQSHG 98
           C    C   F+     ++H+ +H 
Sbjct: 95  CPFDGCNKKFAQSTNLKSHILTHA 118

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 31/53 (58%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG 71
          Y C  C        DMKKH   HTGEKP+KC+ C  + +QSS L  H RKHTG
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82

>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain Of Zinc Finger Protein 435 Length = 77

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 31/57 (54%)
Query: 18 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          +Y C  C      S D+ KH R HTGEKPYKC+ C  +  Q S L  H R HTG  P
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74

>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 32  EDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHE-RKHTGDKPYICQ--QCRDTFSS 86
           E++K H+R HTGEKPY CE+  C+ + + +S    H+ R H+ +KPY+C+   C   ++ 
Sbjct: 83  ENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTD 142
Query: 87  LYLFRNHLQS-HG 98
               R H+++ HG
Sbjct: 143 PSSLRKHVKTVHG 155

>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 37  HMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYIC--QQCRDTFSSLYLFRN 92
           H+R HTGEKP+ C +  C     +S  LKIH+R HTG+KP+ C  + C   F++    + 
Sbjct: 81  HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKK 140
Query: 93  HLQSH 97
           H+  H
Sbjct: 141 HMHVH 145

>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of Human Zinc Finger Protein 24 Length = 72

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          EKPY C  C  + ++SS L  H+R HTG+KPY C +C   FS      NH + H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 34 MKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG--DKPYICQQCRDTFSSLYLFR 91
          + +H   H+GEKPY C  C     +   +  H R H G   KPYICQ C   FS      
Sbjct: 23 LNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN 82
Query: 92 NHLQ 95
           H++
Sbjct: 83 GHIK 86

>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna Length = 57

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 34 MKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 69
          +  H+R HTGEKPYKCE+C Y+  Q ++L+ H  +H
Sbjct: 20 LNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 18 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
          ++ C  C  H   S ++  H R HT E+PY C+ C  +  +   L+ H   H+ +KP+ C
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 78 QQCRDTF 84
          Q+C   F
Sbjct: 77 QECGKGF 83

>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens, Northeast Structural Genomics Consortium Length = 74

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          Y C  C        ++  H   HTGEKPY+C  C     + + LK H R H+G+KP
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73

>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To Dna Length = 73

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 23 ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHT 70
          +CD     S+++ +H+R HTG+KP++C  C  + ++S  L  H R HT
Sbjct: 26 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73

>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In Zinc Finger Protein 32 Length = 41

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          +GEKPY+C+ C  S +Q  +L +HER HTG  P
Sbjct: 6  SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38

>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding Domain In Complex With Kaiso Binding Site Dna Length = 133

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 35/78 (44%)
Query: 19  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
           Y C  C    +    +++H   H+ EK Y C YC      +     HE  HTG++ Y C 
Sbjct: 23  YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 79  QCRDTFSSLYLFRNHLQS 96
            C  +F +     +H++S
Sbjct: 83  ACGKSFINYQFMSSHIKS 100

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 34 MKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERK---HTGDKPYICQQCRDTFSSLYLF 90
          +K H RKHTGEKP++C  C     +   L  HE +   +  ++ + C  C++TF      
Sbjct: 23 LKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL 82
Query: 91 RNHLQSH 97
          R H+ SH
Sbjct: 83 RLHMVSH 89

>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 563- 595) Of Human Zinc Finger Protein 224 Length = 46

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKP+KCE C    TQ+S L  H+R HTG+KP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40

>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In Zinc Finger Protein 473 Length = 42

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTGD 72
          +GEKPY C+ C  + TQSS L IH R HTG+
Sbjct: 6  SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 26/61 (42%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQ 95
          +HM  H G +PY C  C         L  H + HTG KPY C  C   F     F  H+ 
Sbjct: 27 RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVT 86
Query: 96 S 96
          S
Sbjct: 87 S 87

>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 760- 792) Of Human Zinc Finger Protein 347 Length = 46

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPYKC  C  + +Q+S L  H+R HTG+KP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40

>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna Length = 88

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 85
          KP++C  C  + ++S  L  H R HTG+KP+ C  C   F+
Sbjct: 2  KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42

>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 479- 511) Of Human Zinc Finger Protein 224 Length = 46

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKP++CE C    TQ+S L  H+R HTG+KP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	98
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	4e-20
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	1e-13
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	3e-11
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-19
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	9e-19
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	5e-04
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	4e-19
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-16
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	3e-15
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-19
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	9e-15
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-05
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	1e-18
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-18
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	9e-12
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-09
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	4e-18
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	5e-14
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	1e-17
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	6e-17
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-13
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	3e-05
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	1e-17
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	1e-12
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	4e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	4e-17
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	6e-17
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-16
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-16
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-11
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-06
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	7e-17
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	5e-12
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	6e-09
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	1e-16
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	2e-11
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	3e-08
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-16
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	6e-15
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	4e-08
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	3e-16
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	6e-10
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	3e-09
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	4e-16
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	5e-15
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-09
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	5e-16
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	6e-11
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	8e-09
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	5e-16
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	3e-15
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	1e-14
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	2e-04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	5e-16
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	4e-14
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	3e-05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	6e-16
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-12
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	7e-16
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	5e-13
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	8e-16
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	6e-15
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-12
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	9e-08
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-15
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	4e-15
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-13
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-09
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-08
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	6e-15
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	6e-10
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-15
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	7e-04
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-14
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	3e-14
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	3e-14
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	9e-13
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-12
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	4e-14
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	9e-05
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-14
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-14
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-14
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	9e-04
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-14
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-04
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	5e-14
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-14
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	6e-14
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-04
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-14
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	6e-14
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-13
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	6e-13
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-11
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-11
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	9e-14
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	9e-14
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	9e-14
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-04
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-13
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-13
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-13
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-13
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-13
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-04
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-13
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	1e-13
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-13
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-13
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-04
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-13
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	1e-13
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-13
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-13
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-13
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	9e-04
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-13
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	2e-13
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-13
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	3e-09
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-13
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	2e-13
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-13
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-13
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	6e-04
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-13
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-04
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	2e-13
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	5e-04
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-13
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-13
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-13
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-04
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-13
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-13
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-13
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	3e-13
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	5e-04
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	7e-04
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-13
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-04
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-13
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-04
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	3e-13
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-13
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-13
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	3e-13
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	2e-04
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-13
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	9e-04
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-13
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	7e-04
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-13
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-04
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-13
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	4e-13
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	4e-04
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	4e-13
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	6e-04
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	4e-13
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	4e-13
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	7e-04
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	5e-13
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	4e-06
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	5e-05
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-13
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-13
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-13
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-04
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	5e-13
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	3e-04
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-13
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-13
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	6e-13
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	6e-13
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-13
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-13
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-13
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-13
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-04
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	7e-13
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-13
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	8e-13
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	6e-04
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	8e-13
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	9e-13
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	1e-12
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	8e-04
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-12
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	2e-12
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-12
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	8e-04
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-12
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-12
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-05
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	6e-12
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	8e-12
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-12
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	1e-11
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	2e-11
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-11
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	8e-10
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-11
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	3e-11
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	4e-11
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	2e-09
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-11
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	4e-11
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	6e-11
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	6e-10
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	1e-07
2epa_A	72	Krueppel-like factor 10; transforming growth facto	1e-09
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	6e-09
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	9e-08
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	3e-07
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	4e-07
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	1e-06
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	1e-04
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	7e-07
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	9e-04
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	9e-07
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	1e-06
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	4e-06
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	6e-04

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 76.4 bits (189), Expect = 4e-20
 Identities = 24/67 (35%), Positives = 38/67 (56%)

Query: 31 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLF 90
          S  + +H+R HTG+KP++C  C  + ++S  L  H R HTG+KP+ C  C   F+     
Sbjct: 19 SGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDER 78

Query: 91 RNHLQSH 97
          + H + H
Sbjct: 79 KRHTKIH 85

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 59.8 bits (146), Expect = 1e-13
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          + C  C  +   S+ +  H+R HTGEKP+ C+ C     +S   K H + H   K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 53.6 bits (130), Expect = 3e-11
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 44 EKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          E+PY C  E C    +QS +L  H R HTG KP+ C+ C   FS       H+++H
Sbjct: 2  ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 73.7 bits (182), Expect = 3e-19
 Identities = 18/57 (31%), Positives = 26/57 (45%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
            C  C Y       ++ H R H  ++P+KC YC++   Q S L  H +K  GD   
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG 66

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 72.1 bits (178), Expect = 9e-19
 Identities = 19/59 (32%), Positives = 28/59 (47%)

Query: 39 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
             +   P KC  C+YSC+  +AL+IHER H  D+P+ C  C            H++  
Sbjct: 2  SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 34.4 bits (80), Expect = 5e-04
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC 49
          + C  C + T    ++ KHM+K  G+     
Sbjct: 38 FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 74.0 bits (183), Expect = 4e-19
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
          + C  C       + +K HMR HTG KPYKC+ C Y+   SS+L  H R H+ ++P+ CQ
Sbjct: 9  HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68

Query: 79 QCRDTFSSLYLFRNHLQSH 97
           C     +     + L  H
Sbjct: 69 ICPYASRN----SSQLTVH 83

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 67.4 bits (166), Expect = 1e-16
 Identities = 25/59 (42%), Positives = 33/59 (55%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
          Y C  CDY    S  + KH+R H+ E+P+KC+ C Y+   SS L +H R HTGD     
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 64.0 bits (157), Expect = 3e-15
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 41 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
               P+KCE C    ++   LK H R HTG KPY C+ C    +      + L  H
Sbjct: 3  SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAAD----SSSLNKH 55

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 73.3 bits (181), Expect = 4e-19
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 35 KKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG--DKPYICQQCRDTFSSLYLFRN 92
              R H+GEKPY+C  C    TQS  +K+H  +        + C  C    +       
Sbjct: 4  GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63

Query: 93 HLQSH 97
          HL+  
Sbjct: 64 HLRKQ 68

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 62.2 bits (152), Expect = 9e-15
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGE--KPYKCEYCAYSCTQSSALKIHERK-HTGDKPY 75
          Y CY C      S  MK H+ +   E    + C +C     + S L +H RK H+   P 
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 37.9 bits (89), Expect = 3e-05
 Identities = 10/36 (27%), Positives = 15/36 (41%)

Query: 62 LKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
               R H+G+KPY C  C   F+     + H+   
Sbjct: 3  SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQK 38

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 73.3 bits (181), Expect = 1e-18
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 31  SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ--QCRDTFSSLY 88
           S+ +K+H R+HTG KP++C+ C    ++S  LK H R HTG+KP+ C+   C+  F+   
Sbjct: 51  SDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSD 110

Query: 89  LFRNHLQSH 97
               H   H
Sbjct: 111 ELVRHHNMH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 72.2 bits (178), Expect = 4e-18
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 2/69 (2%)

Query: 31 SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLY 88
             ++ H RKHTGEKPY+C++  C    ++S  LK H+R+HTG KP+ C+ C+  FS   
Sbjct: 21 LSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSD 80

Query: 89 LFRNHLQSH 97
            + H ++H
Sbjct: 81 HLKTHTRTH 89

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 55.6 bits (135), Expect = 9e-12
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 42 TGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYIC--QQCRDTFSSLYLFRNHLQSH 97
          + ++P+ C Y  C     + S L++H RKHTG+KPY C  + C   FS     + H + H
Sbjct: 2  SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 49.8 bits (120), Expect = 2e-09
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 19  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKH 69
           + C  C      S+ +K H R HTGEKP+ C +  C     +S  L  H   H
Sbjct: 67  FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 70.6 bits (174), Expect = 4e-18
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 30 MSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYL 89
          M      H      +KPYKC+ C  S      L  H+  HTG+KPY C  C   F+    
Sbjct: 1  MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR--- 57

Query: 90 FRNHLQSH 97
             +L++H
Sbjct: 58 -PANLKTH 64

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 60.2 bits (147), Expect = 5e-14
 Identities = 22/57 (38%), Positives = 29/57 (50%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
          Y C  C        ++  H   HTGEKPY+C  C     + + LK H R H+G+KPY
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 70.5 bits (174), Expect = 1e-17
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQ 95
                  +K + C++C    T+S  L IHER HT ++PY C  C   F      ++HL+
Sbjct: 7  GGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRR----QDHLR 62

Query: 96 SH 97
           H
Sbjct: 63 DH 64

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 68.6 bits (169), Expect = 6e-17
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
          + C  C  H   S ++  H R HT E+PY C+ C  +  +   L+ H   H+ +KP+ CQ
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77

Query: 79 QCRDTFSSLYLFRNHLQSH 97
          +C   F         L  H
Sbjct: 78 ECGKGFCQ----SRTLAVH 92

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 59.8 bits (146), Expect = 2e-13
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 36  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
            H   H+ EKP+KC+ C     QS  L +H+  H        
Sbjct: 63  DHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 38.6 bits (91), Expect = 3e-05
 Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 4/39 (10%)

Query: 59 SSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          SS            K +IC+ C   F+       +L  H
Sbjct: 2  SSGSSGGRLPSKTKKEFICKFCGRHFTK----SYNLLIH 36

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 69.4 bits (171), Expect = 1e-17
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 31 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLF 90
          S    +   +    + YKC+ C  S + SS L  H R HTG+KPY C +C   F      
Sbjct: 3  SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQ---- 58

Query: 91 RNHLQSH 97
          R+HL  H
Sbjct: 59 RSHLIGH 65

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 57.1 bits (139), Expect = 1e-12
 Identities = 24/45 (53%), Positives = 27/45 (60%)

Query: 31 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
          S D+ KH R HTGEKPYKC+ C  +  Q S L  H R HTG  P 
Sbjct: 31 SSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 40.1 bits (95), Expect = 4e-06
 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 4/40 (10%)

Query: 58 QSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
           S +    E +    + Y C +C  +FS      + L  H
Sbjct: 2  SSGSSGRSEWQQRERRRYKCDECGKSFSH----SSDLSKH 37

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 70.9 bits (175), Expect = 4e-17
 Identities = 31/79 (39%), Positives = 43/79 (54%)

Query: 19  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
           Y C  C        +++ H R HTGEKPY C  C  S +Q + L+ H+R HTG+KPY C 
Sbjct: 78  YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137

Query: 79  QCRDTFSSLYLFRNHLQSH 97
           +C  +FS       H ++H
Sbjct: 138 ECGKSFSREDNLHTHQRTH 156

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 70.6 bits (174), Expect = 6e-17
 Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 4/62 (6%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQ 95
          +H R HTGEKPYKC  C  S +    L  H+R HTG+KPY C +C  +FS     R +L+
Sbjct: 39 EHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQ----RANLR 94

Query: 96 SH 97
          +H
Sbjct: 95 AH 96

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 69.8 bits (172), Expect = 1e-16
 Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 4/79 (5%)

Query: 19  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
           Y C  C         ++ H R HTGEKPYKC  C  S ++   L  H+R HTG+KPY C 
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCP 165

Query: 79  QCRDTFSSLYLFRNHLQSH 97
           +C  +FS     R+ L  H
Sbjct: 166 ECGKSFSR----RDALNVH 180

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 69.0 bits (170), Expect = 3e-16
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQ 95
                 GEKPY C  C  S ++S  L  H+R HTG+KPY C +C  +FS     +  L 
Sbjct: 11 AQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD----KKDLT 66

Query: 96 SH 97
           H
Sbjct: 67 RH 68

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 55.9 bits (136), Expect = 3e-11
 Identities = 21/39 (53%), Positives = 25/39 (64%)

Query: 36  KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
            H R HTGEKPYKC  C  S ++  AL +H+R HTG K 
Sbjct: 151 THQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 42.8 bits (102), Expect = 2e-06
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 4/41 (9%)

Query: 57 TQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
            SS+         G+KPY C +C  +FS      +HL  H
Sbjct: 4  FGSSSSVAQAALEPGEKPYACPECGKSFSR----SDHLAEH 40

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 67.9 bits (167), Expect = 7e-17
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
          + C  C  +   S+ +  H+R HTGEKP+ C+ C     +S   K H        P +  
Sbjct: 4  FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILED 62

Query: 79 QCRDTFSSLYLFRNHLQSH 97
          +  +  S  Y    HL++ 
Sbjct: 63 KVEELLSKNY----HLENE 77

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 55.6 bits (135), Expect = 5e-12
 Identities = 17/53 (32%), Positives = 26/53 (49%)

Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          KP++C  C  + ++S  L  H R HTG+KP+ C  C   F+     + H    
Sbjct: 2  KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 47.5 bits (114), Expect = 6e-09
 Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHE---RKHTGDK 73
          + C  C      S++ K+H        P   +      +++  L+      +K  G++
Sbjct: 32 FACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVARLKKLVGER 88

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 67.4 bits (166), Expect = 1e-16
 Identities = 21/50 (42%), Positives = 28/50 (56%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 85
           H+  H+  +PY C+YC     Q S +K H   HTG+KP+ CQ C   FS
Sbjct: 19 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFS 68

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 53.6 bits (130), Expect = 2e-11
 Identities = 24/41 (58%), Positives = 28/41 (68%)

Query: 31 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG 71
            DMKKH   HTGEKP+KC+ C  + +QSS L  H RKHTG
Sbjct: 42 KSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 45.9 bits (110), Expect = 3e-08
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 47 YKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          + C+ C  S  +SS L  H   H+  +PY CQ C   F      ++ ++ H
Sbjct: 2  FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQ----KSDMKKH 48

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 67.5 bits (166), Expect = 1e-16
 Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG--DKPYICQQCRDTFSSLYLFRNH 93
          +H   H+GEKPY C  C     +   +  H R H G   KPYICQ C   FS      +H
Sbjct: 25 RHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSR----PDH 80

Query: 94 LQSH 97
          L  H
Sbjct: 81 LNGH 84

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 63.3 bits (155), Expect = 6e-15
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 41 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
           +G     CE C         L  H+  H+G+KPY C  C   F      ++ +  H
Sbjct: 2  SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKR----KDRMSYH 54

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 45.6 bits (109), Expect = 4e-08
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGE--KPYKCEYCAYSCTQSSALKIHERK-HTGDK 73
          Y+C  C       + M  H+R H G   KPY C+ C    ++   L  H ++ H+G  
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 66.5 bits (163), Expect = 3e-16
 Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 31 SEDMKKHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLY 88
          S  +K H+R HTGEKPYKC  E C +   +S  L  H RKHTG KP+ C  C  +FS   
Sbjct: 30 SSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSD 89

Query: 89 LFRNHLQSH 97
              H++ H
Sbjct: 90 HLALHMKRH 98

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 50.7 bits (122), Expect = 6e-10
 Identities = 16/40 (40%), Positives = 27/40 (67%)

Query: 31 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHT 70
          S+++ +H RKHTG KP++C  C  S ++S  L +H ++H 
Sbjct: 60 SDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 48.8 bits (117), Expect = 3e-09
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 31 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC--QQCRDTFSSLY 88
          S    +  R H  + P     C    T+SS LK H R HTG+KPY C  + C   F+   
Sbjct: 6  SGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSD 61

Query: 89 LFRNHLQSH 97
              H + H
Sbjct: 62 ELTRHYRKH 70

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 66.8 bits (164), Expect = 4e-16
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 7/82 (8%)

Query: 19  YTCYACDYHTLMSEDMKKHMRK---HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
           + C  C       E++ +H  +   +  E+ + C  C  +  +   L++H   HTG+ PY
Sbjct: 36  FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPY 95

Query: 76  ICQQCRDTFSSLYLFRNHLQSH 97
            C  C   F      +  LQSH
Sbjct: 96  KCSSCSQQFMQ----KKDLQSH 113

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 64.1 bits (157), Expect = 5e-15
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 41 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
           +G    +C  C         LK+H RKHTG+KP+ C +C   +      + +L  H
Sbjct: 2  SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFR----KENLLEH 54

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 50.2 bits (121), Expect = 1e-09
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 19  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIH-ERKHTGDK 73
           +TC  C        +++ HM  HTGE PYKC  C+    Q   L+ H  + H+G  
Sbjct: 67  FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 65.6 bits (161), Expect = 5e-16
 Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 6/83 (7%)

Query: 17 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTGDKP 74
          +      C      S  +K H+R HTGEKPY C  + C +   +S  L  H RKHTG +P
Sbjct: 6  HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65

Query: 75 YICQQCRDTFSSLYLFRNHLQSH 97
          + CQ+C   FS      +HL  H
Sbjct: 66 FQCQKCDRAFSR----SDHLALH 84

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 52.9 bits (128), Expect = 6e-11
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 40 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ--QCRDTFSSLYLFRNHLQSH 97
          K T         C  + T+SS LK H R HTG+KPY C    C   F+       H + H
Sbjct: 1  KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 47.1 bits (113), Expect = 8e-09
 Identities = 14/39 (35%), Positives = 28/39 (71%)

Query: 31 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 69
          S+++ +H RKHTG +P++C+ C  + ++S  L +H ++H
Sbjct: 50 SDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 66.3 bits (163), Expect = 5e-16
 Identities = 19/50 (38%), Positives = 22/50 (44%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 85
          +HM  H G +PY C  C         L  H + HTG KPY C  C   F 
Sbjct: 27 RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFM 76

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 64.4 bits (158), Expect = 3e-15
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 38 MRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
              +G+K Y C+ C  S T  S    H   H G +PY C  C   F      ++HL  H
Sbjct: 2  SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKM----KHHLVGH 56

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 62.8 bits (154), Expect = 1e-14
 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 19  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
           Y C  C     M   +  HM+ HTG KPY+C  CA       +   H    +  K Y   
Sbjct: 38  YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAA 95

Query: 79  QCRDTFS 85
           +     +
Sbjct: 96  KAEQNTT 102

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 36.3 bits (85), Expect = 2e-04
 Identities = 5/26 (19%), Positives = 10/26 (38%)

Query: 37  HMRKHTGEKPYKCEYCAYSCTQSSAL 62
           H    +  K Y+      + T++S  
Sbjct: 82  HRHVTSCTKSYEAAKAEQNTTEASGP 107

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 65.6 bits (161), Expect = 5e-16
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG----DKPYICQQCRDTFSSLYLFR 91
             R HTGEKPY C +C  +  Q   L +H +++         ++C +C  TF+     R
Sbjct: 5  SSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTR----R 60

Query: 92 NHLQSH 97
          N +  H
Sbjct: 61 NTMARH 66

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 60.6 bits (148), Expect = 4e-14
 Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 4/70 (5%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGE----KPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          Y C  CD      + +  H +++         + C  C  + T+ + +  H     G   
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75

Query: 75 YICQQCRDTF 84
             +    + 
Sbjct: 76 VEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 38.3 bits (90), Expect = 3e-05
 Identities = 13/36 (36%), Positives = 16/36 (44%)

Query: 62 LKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
               R HTG+KPY C  C  TF    L   H + +
Sbjct: 3  SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 38

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 65.5 bits (160), Expect = 6e-16
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 41 HTGEKPYKCEYCAYSCTQSSALKIHERKHT---GDKPYICQQCRDTFSSLYLFRNHLQSH 97
           +G    +CE C ++C Q ++L  H+RKH        + C+ C   F        H    
Sbjct: 2  SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 57.0 bits (138), Expect = 1e-12
 Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 3/65 (4%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHT---GEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
            C  C +       +  H RKH        + CE+C     +  ++  H  K       
Sbjct: 8  LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67

Query: 76 ICQQC 80
            Q+ 
Sbjct: 68 APQES 72

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 64.8 bits (159), Expect = 7e-16
 Identities = 26/62 (41%), Positives = 34/62 (54%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQ 95
               H+GEKPY C  C  + ++SS L  H+R HTG+KPY C +C   FS      NH +
Sbjct: 4  GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63

Query: 96 SH 97
           H
Sbjct: 64 IH 65

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 57.5 bits (140), Expect = 5e-13
 Identities = 19/40 (47%), Positives = 24/40 (60%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
          +H R HTGEKPYKC  C  + +Q+S L  H+R HT     
Sbjct: 32 QHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 66.0 bits (162), Expect = 8e-16
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 19  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYI 76
           + C  C    + S  +K+H   HTGEKP++C +  C    +    L+ H R HTGD+PY+
Sbjct: 35  HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV 94

Query: 77  C--QQCRDTFSSLYLFRNHLQSH 97
           C    C   F+     ++H+ +H
Sbjct: 95  CPFDGCNKKFAQSTNLKSHILTH 117

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 64.1 bits (157), Expect = 6e-15
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 31 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC--QQCRDTFSSLY 88
          +  M+KH+  H G + + C  C  +  +SS LK H+  HTG+KP+ C  + C   FS  +
Sbjct: 20 NSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDF 78

Query: 89 LFRNHLQSH 97
            R H++ H
Sbjct: 79 NLRTHVRIH 87

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 57.9 bits (141), Expect = 1e-12
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 31  SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPY 75
             +++ H+R HTG++PY C +  C     QS+ LK H   H   K  
Sbjct: 77  DFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 45.6 bits (109), Expect = 9e-08
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 44 EKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
           +   C +  C      +SA++ H   H G + ++C +C   F      + H   H
Sbjct: 3  PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVH 57

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 66.5 bits (163), Expect = 1e-15
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 9/84 (10%)

Query: 19  YTCYACDYHTLM-----SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTG 71
           + C+       +        +  HMR+HTGEKP+KC +  C  S ++   LK H R HTG
Sbjct: 35  FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG 94

Query: 72  DKPYICQQ--CRDTFSSLYLFRNH 93
           +KPY+C+   C   FS+      H
Sbjct: 95  EKPYMCEHEGCSKAFSNASDRAKH 118

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 65.3 bits (160), Expect = 4e-15
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%)

Query: 31  SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIH-ERKHTGDKPYICQ--QCRDTFS 85
            E++K H+R HTGEKPY CE+  C+ + + +S    H  R H+ +KPY+C+   C   ++
Sbjct: 82  LENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYT 141

Query: 86  SLYLFRNHLQSH 97
                R H+++ 
Sbjct: 142 DPSSLRKHVKTV 153

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 60.3 bits (147), Expect = 3e-13
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 19 YTCYACDYHTLMSEDMKKHMRK---HTGEKPYKCEYCAYSC-----TQSSALKIHERKHT 70
               C       E +  H+     H   K + C +   S           L +H R+HT
Sbjct: 4  CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63

Query: 71 GDKPYIC--QQCRDTFSSLYLFRNHLQSH 97
          G+KP+ C  + CR ++S L   + HL+SH
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSH 92

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 49.9 bits (120), Expect = 3e-09
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 8/62 (12%)

Query: 44 EKPYKCEYCAYSCTQSSALKIH---ERKHTGDKPYICQQCRDT-----FSSLYLFRNHLQ 95
          E   + + C+        L  H   E  H   K ++C     +     F + Y+   H++
Sbjct: 1  ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60

Query: 96 SH 97
           H
Sbjct: 61 RH 62

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 48.0 bits (115), Expect = 2e-08
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 31  SEDMKKHM-RKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTG 71
           + D  KH  R H+ EKPY C+   C    T  S+L+ H +   G
Sbjct: 112 ASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 62.6 bits (153), Expect = 6e-15
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 31 SEDMKKHMR-KHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTF 84
           + +  H + +H  +K + C    C  S      LK H + H+  + YIC+    + 
Sbjct: 22 RQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 50.2 bits (121), Expect = 6e-10
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 41 HTGEKPYKCEY--CAYSCTQSSALKIHER-KHTGDKPYICQQ--CRDTFSSLYLFRNHLQ 95
           +G     C++  C    +    L  H++ +H   K + C +  C  +F+     + HL+
Sbjct: 2  SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNF----KKHLK 57

Query: 96 SH 97
           H
Sbjct: 58 EH 59

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 61.4 bits (150), Expect = 8e-15
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGEKPYKCE C         L +H++ HTG++P   
Sbjct: 2  SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.7 bits (78), Expect = 7e-04
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 4/34 (11%)

Query: 64 IHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
                TG+KPY C++C   ++S    + +L  H
Sbjct: 2  SSGSSGTGEKPYKCEKCGKGYNS----KFNLDMH 31

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 60.2 bits (147), Expect = 2e-14
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGEKPYKC  C  + T+ S L IH++ HTG++    
Sbjct: 2  SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 63.1 bits (154), Expect = 3e-14
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 34  MKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQ--QCRDTFSSLYL 89
           +  H+R HTGEKP+ C +  C     +S  LKIH+R HTG+KP+ C+   C   F++   
Sbjct: 78  LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSD 137

Query: 90  FRNHLQSH 97
            + H+  H
Sbjct: 138 RKKHMHVH 145

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 62.7 bits (153), Expect = 3e-14
 Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 31  SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYIC 77
           SE++K H R HTGEKP+KCE+  C      SS  K H   HT DK    
Sbjct: 105 SENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 59.2 bits (144), Expect = 9e-13
 Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 11/90 (12%)

Query: 19  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSC---------TQSSALKIHERKH 69
               +CD       ++  H+       P +  +  Y                L  H R H
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85

Query: 70  TGDKPYIC--QQCRDTFSSLYLFRNHLQSH 97
           TG+KP+ C    C   F+     + H ++H
Sbjct: 86  TGEKPFPCPFPGCGKIFARSENLKIHKRTH 115

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 58.8 bits (143), Expect = 1e-12
 Identities = 10/70 (14%), Positives = 19/70 (27%), Gaps = 9/70 (12%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY---------ICQQCRDTFSSL 87
                 +     + C  + +    L  H        P           C +   +F + 
Sbjct: 16 CKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAK 75

Query: 88 YLFRNHLQSH 97
          Y   NH++ H
Sbjct: 76 YKLVNHIRVH 85

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 59.8 bits (146), Expect = 4e-14
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               TGEKPY+C  C  +    S L +H+R HTG+     
Sbjct: 3  SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 35.9 bits (84), Expect = 9e-05
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 4/34 (11%)

Query: 64 IHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
                TG+KPY C +C+  F++    +++L  H
Sbjct: 2  SSGSSGTGEKPYECNECQKAFNT----KSNLMVH 31

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.8 bits (146), Expect = 4e-14
 Identities = 19/43 (44%), Positives = 24/43 (55%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 79
               +GEKP+KCE C    TQ+S L  H+R HTG+KP     
Sbjct: 3  SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 59.5 bits (145), Expect = 5e-14
 Identities = 17/43 (39%), Positives = 22/43 (51%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 79
               TGEKPY C+ C  S   +S L  H+R H+G+KP     
Sbjct: 3  SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.5 bits (145), Expect = 5e-14
 Identities = 20/42 (47%), Positives = 22/42 (52%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGEKPYKC  C    TQ+S L  H+R HTG KP   
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.3 bits (77), Expect = 9e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)

Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
               TG+KPY C +C   F+      +HL +H
Sbjct: 3  SGSSGTGEKPYKCNECGKVFTQ----NSHLANH 31

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.5 bits (145), Expect = 5e-14
 Identities = 18/42 (42%), Positives = 24/42 (57%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGEKPY+C  C  S T+ S L +H++ HTG+KP   
Sbjct: 2  SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.7 bits (78), Expect = 6e-04
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 4/34 (11%)

Query: 64 IHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
                TG+KPY C  C  +F+     ++ L  H
Sbjct: 2  SSGSSGTGEKPYECSICGKSFTK----KSQLHVH 31

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 59.5 bits (145), Expect = 5e-14
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGEKP+KC  C    ++ SAL +H + HTG+KP   
Sbjct: 2  SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.5 bits (145), Expect = 6e-14
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               TGEKPYKC  C  S T  S L+IH++ HTG++    
Sbjct: 3  SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 59.4 bits (145), Expect = 6e-14
 Identities = 15/42 (35%), Positives = 17/42 (40%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TG KPY C  C  +    S L IH R HTG+     
Sbjct: 2  SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 34.8 bits (81), Expect = 2e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)

Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
               TG KPY+C +C   F S    +++L  H
Sbjct: 3  SGSSGTGMKPYVCNECGKAFRS----KSYLIIH 31

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.5 bits (145), Expect = 6e-14
 Identities = 15/42 (35%), Positives = 19/42 (45%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                +GEKPYKC  C     +   L  H+R HTG+K    
Sbjct: 2  SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 63.0 bits (154), Expect = 6e-14
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 36 KHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFSSLYLFR 91
                   K Y C +  C  +  ++  L+ H  KHTG+KP+ C++  C   F+SL+   
Sbjct: 2  GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61

Query: 92 NHLQSH 97
           H  +H
Sbjct: 62 RHSLTH 67

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 62.2 bits (152), Expect = 1e-13
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 35 KKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFSSLYLF 90
          + H+ KHTGEKP+ C+   C    T    L  H   HTG+K + C    C   F++    
Sbjct: 31 QAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANM 90

Query: 91 RNHLQSH 97
          + H    
Sbjct: 91 KKHFNRF 97

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 60.3 bits (147), Expect = 6e-13
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 35  KKHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTGD---KPYICQQCRDTFSSLYL 89
           K H   HT + PY+C  E C    +  S LK HE+ H G    K   C     T++    
Sbjct: 123 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTL--Y 180

Query: 90  FRNHLQSH 97
            ++  + H
Sbjct: 181 LKHVAECH 188

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 56.8 bits (138), Expect = 1e-11
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 10/69 (14%)

Query: 35  KKHMRKHTGEKPYKCE--YCAYSCTQSSALKIHERKHTGDK--PYIC--QQCRDTFSSLY 88
            +H   HTGEK + C+   C    T  + +K H  +    K   Y+C  + C   F    
Sbjct: 61  TRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKK-- 118

Query: 89  LFRNHLQSH 97
              N L+ H
Sbjct: 119 --HNQLKVH 125

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 56.1 bits (136), Expect = 2e-11
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 6/73 (8%)

Query: 31  SEDMKKHMRKHTGEK--PYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTF 84
             +MKKH  +    K   Y C +  C  +  + + LK+H+  HT   PY C    C   F
Sbjct: 87  KANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRF 146

Query: 85  SSLYLFRNHLQSH 97
           S     + H + H
Sbjct: 147 SLPSRLKRHEKVH 159

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 59.1 bits (144), Expect = 9e-14
 Identities = 17/44 (38%), Positives = 23/44 (52%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 79
                +GEKPY C+YC  +   S+ L  H+R HTG+KP     
Sbjct: 2  SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.7 bits (143), Expect = 9e-14
 Identities = 17/42 (40%), Positives = 22/42 (52%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGEKPY+C  C  S  + S L +H+R HTG+ P   
Sbjct: 2  SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.7 bits (143), Expect = 9e-14
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                GEK YKC+ C    +QSS L+ H+R HTG+KP   
Sbjct: 3  SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 2e-04
 Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 4/34 (11%)

Query: 64 IHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
                 G+K Y C  C   FS      +HLQ+H
Sbjct: 2  SSGSSGMGEKCYKCDVCGKEFSQ----SSHLQTH 31

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 58.7 bits (143), Expect = 1e-13
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 79
                GEK +KC  C    +Q+S+L++H+  H G+KP     
Sbjct: 3  SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.7 bits (143), Expect = 1e-13
 Identities = 18/42 (42%), Positives = 22/42 (52%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGEKPY CE C  +    S L+ H+R HTG+KP   
Sbjct: 2  SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.7 bits (143), Expect = 1e-13
 Identities = 19/42 (45%), Positives = 24/42 (57%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
               TGEKPYKC+ C  S    S+L +H+R HTG+KP    
Sbjct: 3  SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.7 bits (143), Expect = 1e-13
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                G+K +KC  C  + TQSS+L +H+R HTG+KP   
Sbjct: 3  SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.7 bits (143), Expect = 1e-13
 Identities = 19/42 (45%), Positives = 20/42 (47%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGEKPY C  C  S  Q S L  H R HTG+KP   
Sbjct: 2  SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 5e-04
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)

Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
               TG+KPYIC +C  +F      ++HL  H
Sbjct: 3  SGSSGTGEKPYICNECGKSFIQ----KSHLNRH 31

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 58.7 bits (143), Expect = 1e-13
 Identities = 17/41 (41%), Positives = 18/41 (43%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               TGEKPYKCE C         L  H   HTG+KP   
Sbjct: 3  SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 58.7 bits (143), Expect = 1e-13
 Identities = 16/39 (41%), Positives = 18/39 (46%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
                GEKPYKCE C     Q + L+ H   HTG  P 
Sbjct: 2  SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.7 bits (143), Expect = 1e-13
 Identities = 19/42 (45%), Positives = 24/42 (57%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGEKPYKC  C  + +Q+S L  H+R HTG+KP   
Sbjct: 2  SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.3 bits (142), Expect = 1e-13
 Identities = 16/41 (39%), Positives = 19/41 (46%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               TGEKP+KC+ C  S    S L  H   HT +KP   
Sbjct: 3  SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.6 bits (78), Expect = 6e-04
 Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 4/33 (12%)

Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
               TG+KP+ C  C  +F      R+ L  H
Sbjct: 3  SGSSGTGEKPFKCDICGKSFCG----RSRLNRH 31

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.3 bits (142), Expect = 1e-13
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGEKP++C  C  S + +S L +H+R HTG+ P   
Sbjct: 2  SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.3 bits (142), Expect = 1e-13
 Identities = 15/44 (34%), Positives = 20/44 (45%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 79
                +GEKPYKC  C  +  + + L  H R HTG +P     
Sbjct: 2  SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.3 bits (142), Expect = 2e-13
 Identities = 17/42 (40%), Positives = 22/42 (52%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGEKPYKC  C  +    S+L IH+  H+G+KP   
Sbjct: 2  SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 58.3 bits (142), Expect = 2e-13
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TG++PY+C  C  +    S+L  H R HTG+KP   
Sbjct: 2  SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.3 bits (142), Expect = 2e-13
 Identities = 19/42 (45%), Positives = 21/42 (50%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGEKPYKC  C    TQ+S L  H   HTG+KP   
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.2 bits (77), Expect = 9e-04
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)

Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
               TG+KPY C +C   F+      +HL  H
Sbjct: 3  SGSSGTGEKPYKCNECGKVFTQ----NSHLARH 31

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 58.3 bits (142), Expect = 2e-13
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGEKP++C  C  S + SS L  H+R HTG+KP   
Sbjct: 2  SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.3 bits (142), Expect = 2e-13
 Identities = 16/41 (39%), Positives = 22/41 (53%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               TGEK Y C+ C  S +++  L  HER H+G+KP   
Sbjct: 3  SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 58.7 bits (143), Expect = 2e-13
 Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 2/61 (3%)

Query: 39 RKHTGEKPYKCEYCAYSCTQSSALKIHER--KHTGDKPYICQQCRDTFSSLYLFRNHLQS 96
              GE  Y+C+ C+   T  S    H         K Y C  C   F+       H++ 
Sbjct: 3  FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62

Query: 97 H 97
           
Sbjct: 63 I 63

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 47.9 bits (115), Expect = 3e-09
 Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 2/55 (3%)

Query: 19 YTCYACDYHTLMSEDMKKHMR--KHTGEKPYKCEYCAYSCTQSSALKIHERKHTG 71
          Y C  C        +  +H         K Y C +C    T+   +  H +    
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 58.3 bits (142), Expect = 2e-13
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGEKPY+C  C  + +   +L +H+R H+G KP   
Sbjct: 2  SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.6 bits (78), Expect = 7e-04
 Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 4/34 (11%)

Query: 64 IHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
                TG+KPY C  C   FS     R  L  H
Sbjct: 2  SSGSSGTGEKPYECSVCGKAFSH----RQSLSVH 31

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 58.4 bits (142), Expect = 2e-13
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERK-HTGDKPYICQQCRDTFSS 86
               +  KPY C+ C    ++   L  H ++ HT ++P+ CQ      SS
Sbjct: 3  SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.9 bits (141), Expect = 2e-13
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGE+ Y+C  C  +  Q S L +H+R H G+KP   
Sbjct: 2  SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.9 bits (141), Expect = 2e-13
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TG KPY+C  C  + +Q+S L  H+R HTG+KP   
Sbjct: 2  SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 6e-04
 Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 4/34 (11%)

Query: 64 IHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
                TG KPY C +C   FS      + L  H
Sbjct: 2  SSGSSGTGGKPYQCNECGKAFSQ----TSKLARH 31

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.9 bits (141), Expect = 2e-13
 Identities = 18/42 (42%), Positives = 24/42 (57%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                +GEKP++CE C    TQ+S L  H+R HTG+KP   
Sbjct: 2  SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 4e-04
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 4/33 (12%)

Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
               +G+KP+ C++C   F+      +HL SH
Sbjct: 3  SGSSGSGEKPFQCEECGKRFTQ----NSHLHSH 31

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 57.9 bits (141), Expect = 2e-13
 Identities = 17/42 (40%), Positives = 21/42 (50%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TG KPY C  CA + +  S L +H+R HTG KP   
Sbjct: 2  SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 34.0 bits (79), Expect = 5e-04
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 4/33 (12%)

Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
               TG KPY C QC  TFS     ++ L  H
Sbjct: 3  SGSSGTGVKPYGCSQCAKTFS----LKSQLIVH 31

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.9 bits (141), Expect = 2e-13
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               + EKPYKCE C     +   L +H+R H G+K    
Sbjct: 3  SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.9 bits (141), Expect = 2e-13
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               TGE+P+KC  C  S  QS+ L  H+R HTG+KP   
Sbjct: 3  SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.9 bits (141), Expect = 2e-13
 Identities = 17/41 (41%), Positives = 22/41 (53%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               +GEKPY C  C  + +Q S L  H+R HTG+KP   
Sbjct: 3  SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 1e-04
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 4/34 (11%)

Query: 64 IHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
                +G+KPY C +C  TFS     ++ L +H
Sbjct: 2  SSGSSGSGEKPYGCNECGKTFSQ----KSILSAH 31

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 57.9 bits (141), Expect = 2e-13
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
               +GEKP+KCE C      +S    H+R H+G+KP    
Sbjct: 3  SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.9 bits (141), Expect = 2e-13
 Identities = 17/41 (41%), Positives = 22/41 (53%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               TGEKPY+C  C  + T  S L  H++ HTG+KP   
Sbjct: 3  SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 57.9 bits (141), Expect = 3e-13
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGEKPY+C+ C  + +Q++ L  H+R HTG+KP   
Sbjct: 2  SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 57.5 bits (140), Expect = 3e-13
 Identities = 16/39 (41%), Positives = 16/39 (41%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
                GEKPY CE C         LK H R HTG  P 
Sbjct: 2  SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 34.0 bits (79), Expect = 5e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
                G+KPY C+ C   F  L   ++HL+ H
Sbjct: 2  SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 33.6 bits (78), Expect = 7e-04
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPY 47
          Y C  C       + +K H+R HTG  P 
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.5 bits (140), Expect = 3e-13
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                +GEKP+KC+ C  +  Q+  L  H R HTG+KP   
Sbjct: 2  SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.6 bits (78), Expect = 7e-04
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 4/33 (12%)

Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
               +G+KP+ C++C   F        HL SH
Sbjct: 3  SGSSGSGEKPFKCKECGKAFRQ----NIHLASH 31

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.5 bits (140), Expect = 3e-13
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGEKPY+C+ C+ + TQ + L  H++ HTG+KP   
Sbjct: 2  SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 2e-04
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)

Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
               TG+KPY C+ C   F+     + HL  H
Sbjct: 3  SGSSGTGEKPYECKVCSKAFTQ----KAHLAQH 31

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 57.5 bits (140), Expect = 3e-13
 Identities = 14/43 (32%), Positives = 18/43 (41%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 79
                G  PYKC  C  S +    L +H+R HT +KP     
Sbjct: 3  SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 57.5 bits (140), Expect = 3e-13
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGEK YKC  C    +++S L  H++ HTG+KP   
Sbjct: 2  SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.5 bits (140), Expect = 3e-13
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
               TGE+PY C  C  + T  S L  H++ HTG+KP    
Sbjct: 3  SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 57.6 bits (140), Expect = 3e-13
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
                GEKPY+C+ C  + +Q  +L +H R HTG  P 
Sbjct: 2  SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 34.9 bits (81), Expect = 2e-04
 Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 4/33 (12%)

Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
                G+KPY C QC   FS     +  L  H
Sbjct: 2  SSGSSGGEKPYRCDQCGKAFSQ----KGSLIVH 30

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.5 bits (140), Expect = 3e-13
 Identities = 20/42 (47%), Positives = 21/42 (50%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGEKPYKC  C    TQ+S L  H R HTG KP   
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.3 bits (77), Expect = 9e-04
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)

Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
               TG+KPY C +C   F+      +HL  H
Sbjct: 3  SGSSGTGEKPYKCNECGKVFTQ----NSHLARH 31

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.6 bits (140), Expect = 3e-13
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                GEKPY C  C  + +  S L IH R H+G+KP   
Sbjct: 3  SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.7 bits (78), Expect = 7e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)

Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
                G+KPY C +C   FSS    +++L  H
Sbjct: 3  SGSSGAGEKPYGCSECGKAFSS----KSYLIIH 31

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.5 bits (140), Expect = 3e-13
 Identities = 19/41 (46%), Positives = 22/41 (53%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               +GEKPYKC  C    TQ+S L  H R HTG+KP   
Sbjct: 3  SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.6 bits (78), Expect = 8e-04
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 4/33 (12%)

Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
               +G+KPY C +C   F+      +HL +H
Sbjct: 3  SGSSGSGEKPYKCNECGKVFTQ----NSHLTNH 31

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.5 bits (140), Expect = 4e-13
 Identities = 18/42 (42%), Positives = 21/42 (50%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGEKP+KC  C  S  Q   L  H+R HTG+KP   
Sbjct: 2  SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.2 bits (139), Expect = 4e-13
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGEKPY+C  C  + +  S+L  H+  HTG KP   
Sbjct: 2  SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 4e-04
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 4/33 (12%)

Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
               TG+KPY C QC   FS     R+ L +H
Sbjct: 3  SGSSGTGEKPYECNQCGKAFSV----RSSLTTH 31

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.1 bits (139), Expect = 4e-13
 Identities = 14/42 (33%), Positives = 17/42 (40%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGEKPY C  C  +   S+ L  H R HT +     
Sbjct: 2  SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.6 bits (78), Expect = 6e-04
 Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 4/33 (12%)

Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
               TG+KPY C  C   F        HL  H
Sbjct: 3  SGSSGTGEKPYSCNVCGKAFVL----SAHLNQH 31

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.1 bits (139), Expect = 4e-13
 Identities = 16/41 (39%), Positives = 22/41 (53%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               TGEKP++C  C  +    S L +H+R HTG+KP   
Sbjct: 3  SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 57.3 bits (139), Expect = 4e-13
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 37 HMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQ 78
               TGEKP+ C +  C +  ++S  L  H R H+G KP    
Sbjct: 3  SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 33.8 bits (78), Expect = 7e-04
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 31 SEDMKKHMRKHTGEKPYKCE 50
          S+++ +H R H+G KP    
Sbjct: 27 SDELSRHRRSHSGVKPSGPS 46

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 58.0 bits (141), Expect = 5e-13
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 31 SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLY 88
             +K H   HT + PY+C +  C    +  S LK HE+ H G        C     +  
Sbjct: 16 HNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWT 75

Query: 89 LFRNHLQ 95
          L+  H+ 
Sbjct: 76 LYLKHVA 82

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 40.3 bits (95), Expect = 4e-06
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 47 YKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFSSLYLFRNHLQSH 97
          Y C +  C  +  + + LK+H+  HT   PY C    C   FS     + H + H
Sbjct: 2  YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 37.6 bits (88), Expect = 5e-05
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 17 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERK 68
          Y+     CD    +   +K+H + H G    K + C++     +    H  +
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAE 83

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.1 bits (139), Expect = 5e-13
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGEKPYKC+ C  +   SS L  H   H+G++P   
Sbjct: 2  SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.1 bits (139), Expect = 5e-13
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGE+ Y+C  C  +  + S L +H+R HTG+KP   
Sbjct: 2  SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.1 bits (139), Expect = 5e-13
 Identities = 18/41 (43%), Positives = 21/41 (51%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               TG+KPYKC  C    TQ+S L  H   HTG+KP   
Sbjct: 3  SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.6 bits (78), Expect = 6e-04
 Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 4/33 (12%)

Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
               TG KPY C +C   F+      +HL  H
Sbjct: 3  SGSSGTGKKPYKCNECGKVFTQ----NSHLARH 31

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 57.2 bits (139), Expect = 5e-13
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               TG+KP++C +C  S      L  H+R HTG+K    
Sbjct: 3  SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 34.8 bits (81), Expect = 3e-04
 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 4/34 (11%)

Query: 64 IHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
                TG KP+ C  C  +F +    + +L +H
Sbjct: 2  SSGSSGTGQKPFECTHCGKSFRA----KGNLVTH 31

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 57.1 bits (139), Expect = 5e-13
 Identities = 16/41 (39%), Positives = 19/41 (46%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               TGEKPY C  C  + T  S L  H++ HT  KP   
Sbjct: 3  SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.8 bits (138), Expect = 5e-13
 Identities = 15/42 (35%), Positives = 20/42 (47%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TG KPY C  C  + +  S+L  H+  HTG+KP   
Sbjct: 2  SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 56.8 bits (138), Expect = 6e-13
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                 GE+ ++C  C     Q+S    H R HTG+KP   
Sbjct: 2  SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.7 bits (138), Expect = 6e-13
 Identities = 17/41 (41%), Positives = 22/41 (53%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               TGEKPY+C  C  +  Q + L  H+R HTG+KP   
Sbjct: 3  SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.8 bits (138), Expect = 6e-13
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 79
               TG K ++C  C  + T+ S L +H++ HTG+KP     
Sbjct: 3  SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.7 bits (138), Expect = 6e-13
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               TGE P+ C  C    T  + L IH++ HTG++P   
Sbjct: 3  SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.7 bits (138), Expect = 6e-13
 Identities = 19/41 (46%), Positives = 21/41 (51%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               TGEKPYKC  C    TQ+S L  H   HTG+KP   
Sbjct: 3  SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.7 bits (138), Expect = 7e-13
 Identities = 15/41 (36%), Positives = 24/41 (58%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               TGEKPY+C+ C  + +  ++L  H+R H+G+KP   
Sbjct: 3  SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 4e-04
 Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 4/34 (11%)

Query: 64 IHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
                TG+KPY C  CR  FS        L  H
Sbjct: 2  SSGSSGTGEKPYECDVCRKAFSH----HASLTQH 31

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.8 bits (138), Expect = 7e-13
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               TGEKPYKC  C  +    S L  H+  HTG+KP   
Sbjct: 3  SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.4 bits (137), Expect = 8e-13
 Identities = 18/41 (43%), Positives = 21/41 (51%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               TGEKPYKC  C      +S L  H+R HTG+KP   
Sbjct: 3  SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 56.4 bits (137), Expect = 8e-13
 Identities = 14/41 (34%), Positives = 18/41 (43%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               +GEKPY+C  C  +    S L +HER H G      
Sbjct: 3  SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 33.7 bits (78), Expect = 6e-04
 Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 4/33 (12%)

Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
               +G+KPY C +C   F     +++ L  H
Sbjct: 3  SGSSGSGEKPYECNECGKAFI----WKSLLIVH 31

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.4 bits (137), Expect = 8e-13
 Identities = 15/42 (35%), Positives = 19/42 (45%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGEKP+ C  C  + +    L  H R HTG+KP   
Sbjct: 2  SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.4 bits (137), Expect = 9e-13
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               TGEKPYKC  C  +   +S+   H+R HTG +P   
Sbjct: 3  SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.3 bits (137), Expect = 1e-12
 Identities = 17/42 (40%), Positives = 21/42 (50%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGEKPYKC  C     ++S L  H+  HTG+KP   
Sbjct: 2  SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.6 bits (78), Expect = 8e-04
 Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 4/33 (12%)

Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
               TG+KPY C +C   F       +HL  H
Sbjct: 3  SGSSGTGEKPYKCHECGKVFRR----NSHLARH 31

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 56.0 bits (136), Expect = 1e-12
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               TGE PY+C  C  + ++   L  H+R H G+KP   
Sbjct: 3  SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 55.6 bits (135), Expect = 2e-12
 Identities = 15/41 (36%), Positives = 18/41 (43%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               TGEKP KC  C  +    S L +H+R H  DK    
Sbjct: 3  SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 55.2 bits (134), Expect = 2e-12
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 79
                +G+KPY+C+ C  +  Q   L  H+R HTG++      
Sbjct: 2  SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS 45

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 33.3 bits (77), Expect = 8e-04
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 4/33 (12%)

Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
               +G KPY C++CR TF        HL  H
Sbjct: 3  SGSSGSGKKPYECKECRKTFIQ----IGHLNQH 31

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 55.2 bits (134), Expect = 3e-12
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                +GE+P+KC  C     + S L  H R H+ +K    
Sbjct: 2  SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 54.9 bits (133), Expect = 4e-12
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               TGEKP++C+ C  + + S +L  H R H    P   
Sbjct: 3  SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.2 bits (87), Expect = 3e-05
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
               TG+KP+ C++C   FS       HL+SH
Sbjct: 3  SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 54.1 bits (131), Expect = 6e-12
 Identities = 15/42 (35%), Positives = 18/42 (42%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                 GEKPY+C  C  S + S  L  H   HT +KP   
Sbjct: 2  SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 54.1 bits (131), Expect = 8e-12
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 41 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
           +GEKP+ C  C  + +  S L +H++ H  +KP   
Sbjct: 5  SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 53.7 bits (130), Expect = 8e-12
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               +GEK + C+ C  +    SAL+IH+R H G+K    
Sbjct: 3  SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 53.7 bits (130), Expect = 1e-11
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERK-HTGDKPYIC 77
               TG+KPY+C  C  +  Q+++L  H R  HTG+KP   
Sbjct: 3  SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 52.9 bits (128), Expect = 2e-11
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query: 39 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
             +GE PY+C  C  +  +   L  H+R H G+     
Sbjct: 3  SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 53.5 bits (129), Expect = 2e-11
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 37 HMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHL 94
                  +PY C  E C    ++S  L  H R HTG KP+ C+ C   FS       H+
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69

Query: 95 QSH 97
          ++H
Sbjct: 70 RTH 72

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 49.6 bits (119), Expect = 8e-10
 Identities = 16/40 (40%), Positives = 27/40 (67%)

Query: 31 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHT 70
          S+++ +H+R HTG+KP++C  C  + ++S  L  H R HT
Sbjct: 34 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 52.9 bits (128), Expect = 2e-11
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                +  K ++C  C    T  S L  H+R HTG+KP   
Sbjct: 2  SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 52.5 bits (127), Expect = 3e-11
 Identities = 11/42 (26%), Positives = 17/42 (40%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                TGE PY+C  C    ++   L  H++ H+G      
Sbjct: 2  SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 52.5 bits (127), Expect = 4e-11
 Identities = 18/51 (35%), Positives = 24/51 (47%)

Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQ 95
          + + CE C  +  +   LK H R HT +KPY C  C   F+   L   H Q
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 48.3 bits (116), Expect = 2e-09
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERK-HTGDK 73
          + C  C       E +K+H R HT EKPY C  C  + T+   L  H +K H+G+ 
Sbjct: 3  FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.1 bits (126), Expect = 4e-11
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
               +GE+PY C  C  +  + S L  H ++H  +K    
Sbjct: 3  SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 52.3 bits (126), Expect = 4e-11
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
                GE PY C  C  S TQ  +L +H+R  +   P 
Sbjct: 2  SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 51.4 bits (124), Expect = 6e-11
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 39 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
             +G++ Y+C+ C  S  Q  +L +HER HTG  P 
Sbjct: 3  SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 49.3 bits (117), Expect = 6e-10
 Identities = 19/56 (33%), Positives = 24/56 (42%)

Query: 18 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          KY C  C         +KKH+R HT  +PY C YC +S      L  H +     K
Sbjct: 1  KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 43.6 bits (102), Expect = 1e-07
 Identities = 18/51 (35%), Positives = 24/51 (47%)

Query: 47 YKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          Y CE C     + S LK H R HT  +PY C  C  +F +      H++S 
Sbjct: 2  YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 48.9 bits (117), Expect = 1e-09
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 31 SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFSS 86
          S          +  + + C +  C  +  +SS LK H R HTG+KP+ C    C   F+ 
Sbjct: 2  SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61

Query: 87 LYLFRNHLQSH 97
                H ++H
Sbjct: 62 SDELSRHRRTH 72

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 46.4 bits (111), Expect = 6e-09
 Identities = 10/42 (23%), Positives = 14/42 (33%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
                T  K Y C  C  + T+   L  H++ HT       
Sbjct: 2  SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 43.5 bits (103), Expect = 9e-08
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 41 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
           +GEKPY C  C  + + ++ L  H++ HT       
Sbjct: 5  SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 42.2 bits (99), Expect = 3e-07
 Identities = 11/42 (26%), Positives = 14/42 (33%)

Query: 39 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 80
                K   CE C         L  H+  H+G+KPY     
Sbjct: 5  SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 43.6 bits (102), Expect = 4e-07
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 31 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIH--ERKHTGDKPYICQQCRDTFSSLY 88
              K +    TG   ++C+ C+ +      L +H  E  H  D  +          S  
Sbjct: 4  GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKP 63

Query: 89 LFRNHLQSHG 98
            R+ L+  G
Sbjct: 64 RKRSLLEMEG 73

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 42.4 bits (99), Expect = 1e-06
 Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 5/85 (5%)

Query: 18  KYTCYACDYHTLMSEDMKKHMR-----KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGD 72
           K+ C  C        ++  HM      +    +        +S  +  +L   E K    
Sbjct: 19  KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ 78

Query: 73  KPYICQQCRDTFSSLYLFRNHLQSH 97
           K   C  C  +F SL     H+   
Sbjct: 79  KVLKCMYCGHSFESLQDLSVHMIKT 103

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 37.4 bits (86), Expect = 1e-04
 Identities = 9/42 (21%), Positives = 18/42 (42%)

Query: 57 TQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSHG 98
          +  S+ K++    TG   + C+ C   + +L     H+   G
Sbjct: 2  SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETG 43

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 42.3 bits (99), Expect = 7e-07
 Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 7/67 (10%)

Query: 31 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLF 90
          S    K  + H G++  KC  C     + S         +  K  +C++CR         
Sbjct: 3  SGSSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAAL 55

Query: 91 RNHLQSH 97
               + 
Sbjct: 56 NKDEGNE 62

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 34.3 bits (78), Expect = 9e-04
 Identities = 10/39 (25%), Positives = 13/39 (33%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
               +  K   CE C     Q +AL   E   +G K  
Sbjct: 30 RRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 40.8 bits (96), Expect = 9e-07
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 69
            R  TG KP++C  C  S ++S  L +H ++H
Sbjct: 2  STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 41.0 bits (96), Expect = 1e-06
 Identities = 13/39 (33%), Positives = 15/39 (38%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
                 GE P+KC  C    TQ + L  HER H     
Sbjct: 2  SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 40.7 bits (95), Expect = 4e-06
 Identities = 14/68 (20%), Positives = 20/68 (29%), Gaps = 9/68 (13%)

Query: 19 YTCYACDYHTLMSEDMKKHMRK-HTGEKPYKCEYCAY--------SCTQSSALKIHERKH 69
              +CD       ++  H+   H G        C +        S      L  H R H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85

Query: 70 TGDKPYIC 77
          TG+K    
Sbjct: 86 TGEKSGPS 93

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 36

 Score = 33.7 bits (76), Expect = 6e-04
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          +  KPYKC  C+Y+    + L +H RKHTG+K
Sbjct: 5  SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	98
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.95
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.94
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.94
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.94
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.93
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.92
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.92
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.92
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.92
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.92
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.92
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.91
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.91
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.91
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.91
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.91
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.89
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.88
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.88
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.88
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.88
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.88
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.87
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.87
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.87
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.86
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.85
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.84
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.84
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.84
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.83
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.81
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.81
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.81
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.79
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.79
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.77
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.77
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.77
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.77
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.76
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.76
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.75
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.74
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.74
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.73
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.73
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.72
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.72
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.71
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.71
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.71
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.7
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.7
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.69
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.69
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.69
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.69
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.68
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.68
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.68
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.68
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.67
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.67
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.66
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.65
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.65
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.65
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.65
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.64
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.63
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.62
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.62
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.62
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.61
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.6
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.58
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.57
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.57
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.56
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.52
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.49
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.49
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.49
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.49
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.49
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.48
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.48
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.48
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.48
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.48
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.48
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.48
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.48
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.48
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.48
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.48
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.48
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.47
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.47
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.47
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.47
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.47
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.47
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.47
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.47
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.47
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.47
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.47
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.47
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.47
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.47
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.47
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.47
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.47
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.47
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.46
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.46
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.46
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.46
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.46
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.46
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.46
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.46
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.46
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.46
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.45
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.45
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.45
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.45
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.44
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.44
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.42
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.42
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.41
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.4
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.4
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.4
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.39
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.38
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.38
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.38
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.38
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.37
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.37
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.37
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.37
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.37
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.37
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.37
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.36
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.36
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.36
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.36
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.36
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.36
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.36
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.36
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.36
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.35
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.35
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.35
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.35
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.35
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.35
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.34
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.34
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.34
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.34
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.34
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.34
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.34
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.33
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.33
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.33
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.33
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.33
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.33
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.33
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.33
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.33
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.32
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.32
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.32
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.32
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.32
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.32
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.31
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.31
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.31
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.31
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.31
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.31
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.3
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.3
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.3
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.28
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.28
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.28
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.27
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.26
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.26
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.25
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.24
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.24
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.23
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.22
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.22
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.22
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.22
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.21
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.21
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.21
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.2
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.2
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.2
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.2
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.19
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.19
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.19
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.19
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.18
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.18
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.18
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.18
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.17
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.17
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.17
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.17
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.17
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.17
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.16
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.16
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.16
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.16
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.15
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.15
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.11
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.11
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.11
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.11
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.11
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.11
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.1
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.08
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.08
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.08
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.06
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.04
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.04
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.03
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.01
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.0
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.99
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.98
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.98
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.98
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.97
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.97
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.96
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.96
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.94
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.94
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.94
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.92
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.92
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.92
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.91
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.91
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.9
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.89
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.87
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.85
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.84
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.84
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.83
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.83
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.83
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.82
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.81
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.8
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.79
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.79
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.77
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.75
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.75
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.75
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	98.18
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.71
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.7
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.68
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.68
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.68
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.67
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.66
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.66
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.62
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.62
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.62
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.6
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.6
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.58
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.57
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.57
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.56
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.56
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.56
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.96
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.54
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.96
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.54
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.53
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.52
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.52
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.5
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.5
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.48
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.48
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.81
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.42
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.77
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.65
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.17
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.08
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.04
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.85
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	97.16
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.04
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	96.9
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.72
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.42
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.34
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.3
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.1
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	95.05
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	94.74
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	94.55
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	94.13
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	93.9
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	92.29
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	91.76
2kdx_A	119	HYPA, hydrogenase/urease nickel incorporation prot	91.47
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	91.14
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	91.13
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	91.11
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	90.4
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	90.25
2czr_A	226	TBP-interacting protein; tata-binding protein (TBP	89.81
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	89.19
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	88.85
2lcq_A	165	Putative toxin VAPC6; PIN domain, Zn ribbon domain	88.0
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	87.88
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	87.26
1e8j_A	52	Rubredoxin; iron-sulfur-protein, zinc-substitution	86.3
1lko_A	191	Rubrerythrin all-iron(II) form; reduced form, DIIR	86.24
3a43_A	139	HYPD, hydrogenase nickel incorporation protein HYP	85.67
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	85.38
1yk4_A	52	Rubredoxin, RD; electron transport; 0.69A {Pyrococ	84.62
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	84.52
3j20_Y	50	30S ribosomal protein S27AE; archaea, archaeal, KI	84.05
2kn9_A	81	Rubredoxin; metalloprotein, ssgcid, structural gen	83.22
4rxn_A	54	Rubredoxin; electron transfer(iron-sulfur protein)	82.26
3cc2_Z	116	50S ribosomal protein L37AE, 50S ribosomal protein	81.67
1x4v_A	63	Hypothetical protein LOC130617; ZF-AN1 domain, zin	81.16
1gh9_A	71	8.3 kDa protein (gene MTH1184); beta+alpha complex	80.79

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.95  E-value=1.1e-27  Score=124.75  Aligned_cols=86  Identities=26%  Similarity=0.554  Sum_probs=82.3

Q ss_pred             CCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHH
Q psy3500          13 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRN   92 (98)
Q Consensus        13 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~   92 (98)
                      ++|+++|.|.+|++.|.....|..|+++|.+++||.|+.|++.|.....|..|+++|++++||.|..|++.|.....|..
T Consensus        17 h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~   96 (133)
T 2lt7_A           17 VDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSS   96 (133)
T ss_dssp             ETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHH
T ss_pred             cCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhC
Q psy3500          93 HLQSHG   98 (98)
Q Consensus        93 H~~~h~   98 (98)
                      |+++|+
T Consensus        97 H~~~hh  102 (133)
T 2lt7_A           97 HIKSVH  102 (133)
T ss_dssp             HHHHHT
T ss_pred             HhHHhc
Confidence            998763

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.94  E-value=1.3e-26  Score=118.36  Aligned_cols=97  Identities=32%  Similarity=0.679  Sum_probs=91.1

Q ss_pred             CCCCCC--CCCccC-----------CCCCCceecC--CCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHH
Q psy3500           1 MYHCKT--CSTLSR-----------PNISYKYTCY--ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIH   65 (98)
Q Consensus         1 ~~~c~~--c~~~~~-----------~~~~~~~~c~--~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h   65 (98)
                      ||+|+.  ||+.|.           +.++++|.|.  .|++.|.....|..|+..|.+++++.|++|++.|.....|..|
T Consensus         6 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   85 (119)
T 2jp9_A            6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTH   85 (119)
T ss_dssp             CBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHH
T ss_pred             eeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHHHHH
Confidence            689986  999875           4567889999  7999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCCeec--CcCcccccChHHHHHHHhhh
Q psy3500          66 ERKHTGDKPYIC--QQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        66 ~~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h   97 (98)
                      ++.|+++++|.|  +.|++.|.....|..|+++|
T Consensus        86 ~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           86 TRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            999999999999  89999999999999999987

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.94  E-value=5.8e-27  Score=128.12  Aligned_cols=98  Identities=35%  Similarity=0.698  Sum_probs=78.0

Q ss_pred             CCCCCCCCCccC-----------CCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhh
Q psy3500           1 MYHCKTCSTLSR-----------PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH   69 (98)
Q Consensus         1 ~~~c~~c~~~~~-----------~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~   69 (98)
                      ||.|+.||+.|.           +.++++|.|..|++.|.....|..|++.|.++++|.|++|++.|.....|..|++.|
T Consensus        77 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H  156 (190)
T 2i13_A           77 PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH  156 (190)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhc
Confidence            467777777664           345667888888888888888888888888888888888888888888888888888


Q ss_pred             CCCCCeecCcCcccccChHHHHHHHhhhC
Q psy3500          70 TGDKPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        70 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      +++++|.|+.|++.|.....|..|+++|+
T Consensus       157 ~~~~~~~C~~C~~~f~~~~~L~~H~~~H~  185 (190)
T 2i13_A          157 TGEKPYKCPECGKSFSRRDALNVHQRTHT  185 (190)
T ss_dssp             HCCCCEECTTTCCEESSHHHHHHHHTTC-
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHHhcC
Confidence            88888888888888888888888888764

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.94  E-value=4.8e-26  Score=116.98  Aligned_cols=97  Identities=23%  Similarity=0.506  Sum_probs=89.8

Q ss_pred             CCCCCCCCCccC-----------CCCCCceecCCCCCcCCCHHHHHHHHHH---hcCCCceecCCCccccccchhHHHHH
Q psy3500           1 MYHCKTCSTLSR-----------PNISYKYTCYACDYHTLMSEDMKKHMRK---HTGEKPYKCEYCAYSCTQSSALKIHE   66 (98)
Q Consensus         1 ~~~c~~c~~~~~-----------~~~~~~~~c~~C~~~~~~~~~l~~h~~~---h~~~~~~~c~~c~~~~~~~~~l~~h~   66 (98)
                      +|+|++|++.|.           +.++++|.|..|++.|.....|..|+..   +.++.++.|++|++.|.....|..|+
T Consensus         7 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   86 (124)
T 2dlq_A            7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHM   86 (124)
T ss_dssp             SCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHH
T ss_pred             CCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHH
Confidence            689999999875           5667899999999999999999999985   57788999999999999999999999


Q ss_pred             HhhCCCCCeecCcCcccccChHHHHHHHh-hh
Q psy3500          67 RKHTGDKPYICQQCRDTFSSLYLFRNHLQ-SH   97 (98)
Q Consensus        67 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h   97 (98)
                      +.|+++++|.|..|++.|.....|..|++ .|
T Consensus        87 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H  118 (124)
T 2dlq_A           87 VSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH  118 (124)
T ss_dssp             HHHSSSCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             HHcCCCCCccCCCccchhCCHHHHHHHHHHHC
Confidence            99999999999999999999999999987 44

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.93  E-value=1.2e-25  Score=122.92  Aligned_cols=83  Identities=37%  Similarity=0.740  Sum_probs=53.4

Q ss_pred             CCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHHH
Q psy3500          15 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHL   94 (98)
Q Consensus        15 ~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   94 (98)
                      ++++|.|..|++.|.....|..|+..|.+++++.|+.|++.|.....|..|++.|+++++|.|..|++.|.....|..|+
T Consensus        74 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~  153 (190)
T 2i13_A           74 GEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQ  153 (190)
T ss_dssp             CCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHH
T ss_pred             CCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHH
Confidence            34556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hhh
Q psy3500          95 QSH   97 (98)
Q Consensus        95 ~~h   97 (98)
                      ++|
T Consensus       154 ~~H  156 (190)
T 2i13_A          154 RTH  156 (190)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            655

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.92  E-value=3.1e-25  Score=114.06  Aligned_cols=98  Identities=31%  Similarity=0.687  Sum_probs=90.0

Q ss_pred             CCCCC--CCCCccCC----------CCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC--CccccccchhHHHHH
Q psy3500           1 MYHCK--TCSTLSRP----------NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHE   66 (98)
Q Consensus         1 ~~~c~--~c~~~~~~----------~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~--c~~~~~~~~~l~~h~   66 (98)
                      +|.|+  .||+.|..          .++.+|.|..|++.|.....|..|+..|.+++++.|..  |++.|.....|..|+
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~   84 (124)
T 1ubd_C            5 TIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV   84 (124)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHGGGSCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHH
T ss_pred             cccCCCCCCcCccCCHHHHHHHHHHcCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHH
Confidence            68898  89987751          26788999999999999999999999999999999986  999999999999999


Q ss_pred             HhhCCCCCeecC--cCcccccChHHHHHHHhhhC
Q psy3500          67 RKHTGDKPYICQ--QCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        67 ~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~   98 (98)
                      +.|.++++|.|+  .|++.|.....|..|+++|+
T Consensus        85 ~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~  118 (124)
T 1ubd_C           85 RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA  118 (124)
T ss_dssp             HHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             HHhCCCCceECCCCCCCCccCCHHHHHHHHHHHc
Confidence            999999999995  59999999999999999884

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.92  E-value=9.1e-25  Score=116.10  Aligned_cols=98  Identities=30%  Similarity=0.527  Sum_probs=89.3

Q ss_pred             CCCCCCCCCccC------------CCCCCc--------eecCCCCCcCCCHHHHHHHHHHhcCCCceecCC--Ccccccc
Q psy3500           1 MYHCKTCSTLSR------------PNISYK--------YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQ   58 (98)
Q Consensus         1 ~~~c~~c~~~~~------------~~~~~~--------~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~--c~~~~~~   58 (98)
                      +|.|+.||+.|.            +.++.+        |.|..|++.|.....|..|++.|.++++|.|..  |++.|..
T Consensus        25 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~  104 (155)
T 2rpc_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFAR  104 (155)
T ss_dssp             SSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESC
T ss_pred             ccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCC
Confidence            588999999775            333333        789999999999999999999999999999998  9999999


Q ss_pred             chhHHHHHHhhCCCCCeecCc--CcccccChHHHHHHHhhhC
Q psy3500          59 SSALKIHERKHTGDKPYICQQ--CRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        59 ~~~l~~h~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~   98 (98)
                      ...|..|++.|+++++|.|..  |++.|.....|..|+++|+
T Consensus       105 ~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~  146 (155)
T 2rpc_A          105 SENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT  146 (155)
T ss_dssp             HHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTT
T ss_pred             HHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhc
Confidence            999999999999999999996  9999999999999999884

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=1.5e-24  Score=107.15  Aligned_cols=86  Identities=36%  Similarity=0.636  Sum_probs=82.2

Q ss_pred             CCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHH
Q psy3500          13 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRN   92 (98)
Q Consensus        13 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~   92 (98)
                      ..++++|.|..|++.|.....|..|++.|.+++++.|.+|++.|.....|..|++.|.++++|.|..|++.|.....|..
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   82 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTV   82 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHH
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhC
Q psy3500          93 HLQSHG   98 (98)
Q Consensus        93 H~~~h~   98 (98)
                      |+++|+
T Consensus        83 H~~~h~   88 (96)
T 2dmd_A           83 HLRSHT   88 (96)
T ss_dssp             HHTTCC
T ss_pred             HHHHhc
Confidence            999874

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.92  E-value=1.6e-24  Score=104.18  Aligned_cols=81  Identities=32%  Similarity=0.627  Sum_probs=78.1

Q ss_pred             ceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHHHhhh
Q psy3500          18 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        18 ~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      +|.|..|++.|.....|..|+..|.+++++.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhh
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             C
Q psy3500          98 G   98 (98)
Q Consensus        98 ~   98 (98)
                      +
T Consensus        81 ~   81 (82)
T 2kmk_A           81 T   81 (82)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.92  E-value=1.8e-24  Score=105.65  Aligned_cols=84  Identities=33%  Similarity=0.703  Sum_probs=79.0

Q ss_pred             CCCceecC--CCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHH
Q psy3500          15 ISYKYTCY--ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRN   92 (98)
Q Consensus        15 ~~~~~~c~--~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~   92 (98)
                      ++++|.|+  .|++.|.....|..|++.|.+++++.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   80 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR   80 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHH
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHH
Confidence            46789998  6999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhC
Q psy3500          93 HLQSHG   98 (98)
Q Consensus        93 H~~~h~   98 (98)
                      |+++|+
T Consensus        81 H~~~H~   86 (90)
T 1a1h_A           81 HTKIHL   86 (90)
T ss_dssp             HHGGGG
T ss_pred             HHHHhc
Confidence            999884

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.92  E-value=4.8e-24  Score=107.03  Aligned_cols=87  Identities=28%  Similarity=0.553  Sum_probs=82.4

Q ss_pred             CCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHH
Q psy3500          12 RPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFR   91 (98)
Q Consensus        12 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~   91 (98)
                      ....+++|.|..|++.|.....|..|+..|.++++|.|.+|++.|.....|..|++.|.++++|.|..|++.|.....|.
T Consensus        11 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~   90 (106)
T 2ee8_A           11 PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLA   90 (106)
T ss_dssp             CCCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHH
T ss_pred             CcCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhC
Q psy3500          92 NHLQSHG   98 (98)
Q Consensus        92 ~H~~~h~   98 (98)
                      .|+++|+
T Consensus        91 ~H~~~H~   97 (106)
T 2ee8_A           91 VHKTLHM   97 (106)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhC
Confidence            9999884

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.91  E-value=6.6e-25  Score=114.22  Aligned_cols=88  Identities=27%  Similarity=0.462  Sum_probs=79.8

Q ss_pred             CCCCCCCCCccC-----------CCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhh
Q psy3500           1 MYHCKTCSTLSR-----------PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH   69 (98)
Q Consensus         1 ~~~c~~c~~~~~-----------~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~   69 (98)
                      ||+|++||+.|.           ++++++|.|..|++.|.....|..|+++|++++|+.|++|++.|.....|..|++.+
T Consensus        22 ~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~h  101 (133)
T 2lt7_A           22 YYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSV  101 (133)
T ss_dssp             EEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHHHHHHH
T ss_pred             CeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHHHHHhHHh
Confidence            689999999875           677899999999999999999999999999999999999999999999999999988


Q ss_pred             CCC------CCeecCcCcccccChH
Q psy3500          70 TGD------KPYICQQCRDTFSSLY   88 (98)
Q Consensus        70 ~~~------~~~~C~~C~~~f~~~~   88 (98)
                      +++      ++|.|..|++.|....
T Consensus       102 h~~~p~~~~k~~~C~~C~k~~~~~~  126 (133)
T 2lt7_A          102 HSQDPSGDSKLYRLHPCRSLQIRQY  126 (133)
T ss_dssp             TCCCTTSSSCCEEECCCCSSCCCCC
T ss_pred             cCCCCCCCCCCeecCCCCchhhhcc
Confidence            765      4589999999887543

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.91  E-value=4.6e-24  Score=107.73  Aligned_cols=86  Identities=30%  Similarity=0.523  Sum_probs=82.2

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHH
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLF   90 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l   90 (98)
                      ..++++++|.| .|++.|.....|..|++.|.++++|.|++|++.|.....|..|++.|.++++|.|..|++.|.....|
T Consensus         3 ~~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   81 (110)
T 2csh_A            3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF   81 (110)
T ss_dssp             CCCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHH
T ss_pred             CCCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHH
Confidence            35678899999 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhh
Q psy3500          91 RNHLQSH   97 (98)
Q Consensus        91 ~~H~~~h   97 (98)
                      ..|+++|
T Consensus        82 ~~H~~~~   88 (110)
T 2csh_A           82 HRHVTSC   88 (110)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            9999876

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=1.5e-23  Score=103.34  Aligned_cols=85  Identities=32%  Similarity=0.623  Sum_probs=80.3

Q ss_pred             CCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCC--CCeecCcCcccccChHHHH
Q psy3500          14 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGD--KPYICQQCRDTFSSLYLFR   91 (98)
Q Consensus        14 ~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~--~~~~C~~C~~~f~~~~~l~   91 (98)
                      +++++|.|..|++.|.....|..|+..|.++++|.|.+|++.|.....|..|++.|.++  ++|.|..|++.|.....|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~   82 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN   82 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHH
Confidence            57789999999999999999999999999999999999999999999999999999987  8999999999999999999


Q ss_pred             HHHh-hhC
Q psy3500          92 NHLQ-SHG   98 (98)
Q Consensus        92 ~H~~-~h~   98 (98)
                      .|++ +|+
T Consensus        83 ~H~~~~H~   90 (95)
T 2yt9_A           83 GHIKQVHS   90 (95)
T ss_dssp             HHHHHTSC
T ss_pred             HHHHHhcC
Confidence            9986 663

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.91  E-value=1.1e-23  Score=115.13  Aligned_cols=98  Identities=30%  Similarity=0.564  Sum_probs=80.5

Q ss_pred             CCCC--CCCCCccC-----------CCCCCceecC--CCCCcCCCHHHHHHHH-HHh-cCCCceec--CCCccccccchh
Q psy3500           1 MYHC--KTCSTLSR-----------PNISYKYTCY--ACDYHTLMSEDMKKHM-RKH-TGEKPYKC--EYCAYSCTQSSA   61 (98)
Q Consensus         1 ~~~c--~~c~~~~~-----------~~~~~~~~c~--~C~~~~~~~~~l~~h~-~~h-~~~~~~~c--~~c~~~~~~~~~   61 (98)
                      ||.|  +.||+.|.           +.++++|.|.  .|++.|.....|..|+ ..| .+..++.|  ..|++.|.....
T Consensus        42 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~  121 (190)
T 1tf6_A           42 PFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQ  121 (190)
T ss_dssp             SSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHH
T ss_pred             CccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHH
Confidence            5788  77887664           5667788888  7888888888888888 456 46678888  888888888888


Q ss_pred             HHHHHHhhCCCCCeecCc--CcccccChHHHHHHHhhhC
Q psy3500          62 LKIHERKHTGDKPYICQQ--CRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        62 l~~h~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~   98 (98)
                      |..|++.|++++||.|+.  |++.|.....|..|+++|+
T Consensus       122 L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~  160 (190)
T 1tf6_A          122 LKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA  160 (190)
T ss_dssp             HHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSC
T ss_pred             HHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhC
Confidence            888888888888899977  8888888888888888774

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=1.3e-23  Score=111.54  Aligned_cols=86  Identities=31%  Similarity=0.651  Sum_probs=76.8

Q ss_pred             CCCCCceecCC--CCCcCCCHHHHHHHHHHhcCCCceecCC--CccccccchhHHHHH-HhhCCCCCeecCc--Cccccc
Q psy3500          13 PNISYKYTCYA--CDYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHE-RKHTGDKPYICQQ--CRDTFS   85 (98)
Q Consensus        13 ~~~~~~~~c~~--C~~~~~~~~~l~~h~~~h~~~~~~~c~~--c~~~~~~~~~l~~h~-~~~~~~~~~~C~~--C~~~f~   85 (98)
                      +.++++|.|..  |++.|.....|..|++.|.++++|.|++  |++.|.....|..|+ +.|+++++|.|..  |++.|.
T Consensus        62 h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~  141 (155)
T 2gli_A           62 HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYT  141 (155)
T ss_dssp             HHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEES
T ss_pred             cCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccC
Confidence            45567899985  9999999999999999999999999998  999999999999998 7899999999988  999999


Q ss_pred             ChHHHHHHHhhhC
Q psy3500          86 SLYLFRNHLQSHG   98 (98)
Q Consensus        86 ~~~~l~~H~~~h~   98 (98)
                      ....|..|+++|+
T Consensus       142 ~~~~L~~H~~~hh  154 (155)
T 2gli_A          142 DPSSLRKHVKTVH  154 (155)
T ss_dssp             SHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHhhc
Confidence            9999999998774

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.89  E-value=9.1e-23  Score=108.26  Aligned_cols=98  Identities=33%  Similarity=0.544  Sum_probs=87.8

Q ss_pred             CCCCCCCCCccC--------------CCCCCceecCCC-----CCcCCCHHHHHHHHHHhcCCCceecCC--Cccccccc
Q psy3500           1 MYHCKTCSTLSR--------------PNISYKYTCYAC-----DYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQS   59 (98)
Q Consensus         1 ~~~c~~c~~~~~--------------~~~~~~~~c~~C-----~~~~~~~~~l~~h~~~h~~~~~~~c~~--c~~~~~~~   59 (98)
                      +|.|+.||+.|.              +.++++|.|.+|     ++.|.....|..|+..|.+++++.|+.  |++.|...
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~   82 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRL   82 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSH
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCH
Confidence            588999998774              456778888753     488999999999999999999999985  99999999


Q ss_pred             hhHHHHHHhhCCCCCeecCc--CcccccChHHHHHHH-hhhC
Q psy3500          60 SALKIHERKHTGDKPYICQQ--CRDTFSSLYLFRNHL-QSHG   98 (98)
Q Consensus        60 ~~l~~h~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~-~~h~   98 (98)
                      ..|..|++.|+++++|.|..  |++.|.....|..|+ ++|+
T Consensus        83 ~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~  124 (155)
T 2gli_A           83 ENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS  124 (155)
T ss_dssp             HHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcC
Confidence            99999999999999999998  999999999999998 6763

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.88  E-value=3.5e-22  Score=101.90  Aligned_cols=84  Identities=36%  Similarity=0.753  Sum_probs=80.4

Q ss_pred             CCCCceecCC--CCCcCCCHHHHHHHHHHhcCCCceecC--CCccccccchhHHHHHHhhCCCCCeecCcCcccccChHH
Q psy3500          14 NISYKYTCYA--CDYHTLMSEDMKKHMRKHTGEKPYKCE--YCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYL   89 (98)
Q Consensus        14 ~~~~~~~c~~--C~~~~~~~~~l~~h~~~h~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~   89 (98)
                      +++++|.|..  |++.|.....|..|+..|.+++++.|+  .|++.|.....|..|++.|.++++|.|..|++.|.....
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   81 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDH   81 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHH
Confidence            5678999997  999999999999999999999999999  799999999999999999999999999999999999999


Q ss_pred             HHHHHhhh
Q psy3500          90 FRNHLQSH   97 (98)
Q Consensus        90 l~~H~~~h   97 (98)
                      |..|+++|
T Consensus        82 l~~H~~~h   89 (119)
T 2jp9_A           82 LKTHTRTH   89 (119)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999987

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.88  E-value=2.1e-22  Score=98.13  Aligned_cols=83  Identities=39%  Similarity=0.730  Sum_probs=78.6

Q ss_pred             CCceecCC--CCCcCCCHHHHHHHHHHhcCCCceecC--CCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHH
Q psy3500          16 SYKYTCYA--CDYHTLMSEDMKKHMRKHTGEKPYKCE--YCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFR   91 (98)
Q Consensus        16 ~~~~~c~~--C~~~~~~~~~l~~h~~~h~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~   91 (98)
                      ..+|.|..  |++.|.....|..|+..|.+++++.|+  .|++.|.....|..|++.|+++++|.|..|++.|.....|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA   82 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHH
Confidence            45789998  999999999999999999999999997  69999999999999999999999999999999999999999


Q ss_pred             HHHhhhC
Q psy3500          92 NHLQSHG   98 (98)
Q Consensus        92 ~H~~~h~   98 (98)
                      .|+++|.
T Consensus        83 ~H~~~H~   89 (89)
T 2wbs_A           83 LHMKRHF   89 (89)
T ss_dssp             HHGGGGC
T ss_pred             HHHHhhC
Confidence            9999984

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.88  E-value=2e-22  Score=110.15  Aligned_cols=98  Identities=26%  Similarity=0.503  Sum_probs=89.2

Q ss_pred             CCCC--CCCCCccC-----------CCCCCceec--CCCCCcCCCHHHHHHHHHHhcCCCceecC--CCccccccchhHH
Q psy3500           1 MYHC--KTCSTLSR-----------PNISYKYTC--YACDYHTLMSEDMKKHMRKHTGEKPYKCE--YCAYSCTQSSALK   63 (98)
Q Consensus         1 ~~~c--~~c~~~~~-----------~~~~~~~~c--~~C~~~~~~~~~l~~h~~~h~~~~~~~c~--~c~~~~~~~~~l~   63 (98)
                      +|.|  +.||+.|.           +.++++|.|  ..|++.|.....|..|+++|.+++++.|.  .|++.|.....|.
T Consensus        12 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~   91 (190)
T 1tf6_A           12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMK   91 (190)
T ss_dssp             CCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHH
T ss_pred             ceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHH
Confidence            6889  68999876           456789999  88999999999999999999999999999  8999999999999


Q ss_pred             HHH-Hhh-CCCCCeec--CcCcccccChHHHHHHHhhhC
Q psy3500          64 IHE-RKH-TGDKPYIC--QQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        64 ~h~-~~~-~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      .|+ ..| .++++|.|  ..|++.|.....|..|+++|+
T Consensus        92 ~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~  130 (190)
T 1tf6_A           92 KHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHT  130 (190)
T ss_dssp             HHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGS
T ss_pred             HHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhC
Confidence            999 666 46789999  899999999999999999884

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.88  E-value=7e-22  Score=98.08  Aligned_cols=85  Identities=38%  Similarity=0.660  Sum_probs=79.5

Q ss_pred             CCCCceecCC--CCCcCCCHHHHHHHHHHhcCCCceecC--CCccccccchhHHHHHHhhCCCCCeecCcCcccccChHH
Q psy3500          14 NISYKYTCYA--CDYHTLMSEDMKKHMRKHTGEKPYKCE--YCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYL   89 (98)
Q Consensus        14 ~~~~~~~c~~--C~~~~~~~~~l~~h~~~h~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~   89 (98)
                      ..+..|.|..  |++.|.....|..|++.|.+++++.|+  .|++.|.....|..|++.|+++++|.|..|++.|.....
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   90 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDH   90 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHH
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHH
Confidence            3456799986  999999999999999999999999996  699999999999999999999999999999999999999


Q ss_pred             HHHHHhhhC
Q psy3500          90 FRNHLQSHG   98 (98)
Q Consensus        90 l~~H~~~h~   98 (98)
                      |..|+++|+
T Consensus        91 l~~H~~~H~   99 (100)
T 2ebt_A           91 LALHMKRHQ   99 (100)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999999984

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=2e-22  Score=101.32  Aligned_cols=85  Identities=22%  Similarity=0.351  Sum_probs=78.8

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHH
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLF   90 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l   90 (98)
                      ..+.++++|.|..|++.|.....|..|++.|.  ++|.|.+|++.|.....|..|+. |+++++|.|..|++.|.....|
T Consensus         9 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~--~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L   85 (107)
T 1wjp_A            9 SPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSI   85 (107)
T ss_dssp             CCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH--HSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHH
T ss_pred             cccCCCcCeECCCCCCccCCHHHHHHHHHHCC--CCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHH
Confidence            45778899999999999999999999999984  68999999999999999999996 9999999999999999999999


Q ss_pred             HHHHh-hhC
Q psy3500          91 RNHLQ-SHG   98 (98)
Q Consensus        91 ~~H~~-~h~   98 (98)
                      ..|++ +|+
T Consensus        86 ~~H~~~~H~   94 (107)
T 1wjp_A           86 WRHQVEVHN   94 (107)
T ss_dssp             HHHHHHTSC
T ss_pred             HHHHHHHcC
Confidence            99997 663

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.87  E-value=6.2e-23  Score=104.30  Aligned_cols=87  Identities=18%  Similarity=0.223  Sum_probs=79.3

Q ss_pred             CCCCCCceecCCCCCcCCCHHHHHHHHHH--hcCCCcee-cCCCcccc--ccchhHHHHHHhhCCCCCeecCcCcccccC
Q psy3500          12 RPNISYKYTCYACDYHTLMSEDMKKHMRK--HTGEKPYK-CEYCAYSC--TQSSALKIHERKHTGDKPYICQQCRDTFSS   86 (98)
Q Consensus        12 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~--h~~~~~~~-c~~c~~~~--~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~   86 (98)
                      .+.++++|.|..|++.|.....|..|++.  |.+.+++. |..|++.|  .....|..|++.|++++||.|..|++.|..
T Consensus        13 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~   92 (115)
T 2dmi_A           13 IFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFES   92 (115)
T ss_dssp             CCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSS
T ss_pred             eeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCCCCCccCC
Confidence            46788999999999999999999999998  76666654 99999999  888999999999999999999999999999


Q ss_pred             hHHHHHHHhhhC
Q psy3500          87 LYLFRNHLQSHG   98 (98)
Q Consensus        87 ~~~l~~H~~~h~   98 (98)
                      ...|..|+++|+
T Consensus        93 ~~~L~~H~~~hh  104 (115)
T 2dmi_A           93 LQDLSVHMIKTK  104 (115)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhC
Confidence            999999998863

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.87  E-value=1.8e-22  Score=91.67  Aligned_cols=57  Identities=21%  Similarity=0.441  Sum_probs=37.1

Q ss_pred             CCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCC
Q psy3500          16 SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGD   72 (98)
Q Consensus        16 ~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   72 (98)
                      |+||.|.+|++.|.....|..|+++|++++||.|.+|++.|...+.|..|+++|+|+
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            456666666666666666666666666666666666666666666666666666655

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.87  E-value=1.2e-21  Score=100.54  Aligned_cols=85  Identities=32%  Similarity=0.571  Sum_probs=80.0

Q ss_pred             CCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHh---hCCCCCeecCcCcccccChHHH
Q psy3500          14 NISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERK---HTGDKPYICQQCRDTFSSLYLF   90 (98)
Q Consensus        14 ~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~~~~C~~C~~~f~~~~~l   90 (98)
                      +++.+|.|..|++.|.....|..|+..|.+++++.|+.|++.|.....|..|+..   +.++++|.|..|++.|.....|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l   82 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL   82 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHH
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHH
Confidence            5678999999999999999999999999999999999999999999999999985   5788999999999999999999


Q ss_pred             HHHHhhhC
Q psy3500          91 RNHLQSHG   98 (98)
Q Consensus        91 ~~H~~~h~   98 (98)
                      ..|+++|+
T Consensus        83 ~~H~~~h~   90 (124)
T 2dlq_A           83 RLHMVSHT   90 (124)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHcC
Confidence            99999874

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.86  E-value=9.6e-22  Score=89.28  Aligned_cols=56  Identities=30%  Similarity=0.698  Sum_probs=54.1

Q ss_pred             CCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHHHhhhC
Q psy3500          43 GEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        43 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      .|+||.|.+|++.|...+.|..|+++|++++||.|..||+.|.....|..|+++|+
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Ht   56 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ   56 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGS
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccC
Confidence            37899999999999999999999999999999999999999999999999999985

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.85  E-value=6.6e-21  Score=91.94  Aligned_cols=78  Identities=29%  Similarity=0.556  Sum_probs=74.1

Q ss_pred             ceec--CCCCCcCCCHHHHHHHHHHhcCCCceecCC--CccccccchhHHHHHHhhCCCCCeecCc---CcccccChHHH
Q psy3500          18 KYTC--YACDYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ---CRDTFSSLYLF   90 (98)
Q Consensus        18 ~~~c--~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~C~~---C~~~f~~~~~l   90 (98)
                      +|.|  ..|++.|.....|..|+++|.+++++.|+.  |++.|.....|..|++.|++   |.|..   |++.|.....|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l   77 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLY   77 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHH
Confidence            5788  889999999999999999999999999988  99999999999999999988   99999   99999999999


Q ss_pred             HHHHhhhC
Q psy3500          91 RNHLQSHG   98 (98)
Q Consensus        91 ~~H~~~h~   98 (98)
                      ..|+++|+
T Consensus        78 ~~H~~~hh   85 (85)
T 2j7j_A           78 LKHVAECH   85 (85)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhcC
Confidence            99999875

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.84  E-value=5.7e-22  Score=96.54  Aligned_cols=81  Identities=25%  Similarity=0.480  Sum_probs=76.0

Q ss_pred             CCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHHHh
Q psy3500          16 SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQ   95 (98)
Q Consensus        16 ~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~   95 (98)
                      +++|.|..|++.|.....|..|+++|.++++|.|+.|++.|.....|..|++.+.+ .+|.|..|++.|.....|..|++
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~~   79 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVA   79 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHHH
Confidence            46899999999999999999999999999999999999999999999999998875 68999999999999999999987


Q ss_pred             hh
Q psy3500          96 SH   97 (98)
Q Consensus        96 ~h   97 (98)
                      .+
T Consensus        80 ~~   81 (88)
T 1llm_C           80 RL   81 (88)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.84  E-value=1.3e-20  Score=89.94  Aligned_cols=72  Identities=22%  Similarity=0.393  Sum_probs=67.6

Q ss_pred             CCCCceecCC--CCCcCCCHHHHHHHHH-HhcCCCceecCC--CccccccchhHHHHHHhhCCCCCeecCcCccccc
Q psy3500          14 NISYKYTCYA--CDYHTLMSEDMKKHMR-KHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS   85 (98)
Q Consensus        14 ~~~~~~~c~~--C~~~~~~~~~l~~h~~-~h~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~   85 (98)
                      +++++|.|..  |++.|.....|..|++ .|.++++|.|..  |++.|.....|..|+++|+++++|.|..|++.|.
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            5677889886  9999999999999999 799999999999  9999999999999999999999999999999884

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.84  E-value=2.5e-20  Score=95.62  Aligned_cols=82  Identities=32%  Similarity=0.593  Sum_probs=75.6

Q ss_pred             CCCceecC--CCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCc--CcccccChHHH
Q psy3500          15 ISYKYTCY--ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFSSLYLF   90 (98)
Q Consensus        15 ~~~~~~c~--~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~--C~~~f~~~~~l   90 (98)
                      .+++|.|+  .|++.|.....|..|+..| +.+++.|..|++.|.....|..|++.|.++++|.|..  |++.|.....|
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l   80 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNL   80 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHH
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHH
Confidence            35689999  8999999999999999998 8889999999999999999999999999999999975  99999999999


Q ss_pred             HHHHhhh
Q psy3500          91 RNHLQSH   97 (98)
Q Consensus        91 ~~H~~~h   97 (98)
                      ..|+++|
T Consensus        81 ~~H~~~h   87 (124)
T 1ubd_C           81 RTHVRIH   87 (124)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999887

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.83  E-value=1.6e-20  Score=94.06  Aligned_cols=77  Identities=26%  Similarity=0.484  Sum_probs=71.6

Q ss_pred             CCCCCCCCCccC-----------CCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhh
Q psy3500           1 MYHCKTCSTLSR-----------PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH   69 (98)
Q Consensus         1 ~~~c~~c~~~~~-----------~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~   69 (98)
                      +|.|+.|++.|.           +.++++|.|.+|++.|.....|..|++.|.++++|.|.+|++.|.....|..|++.|
T Consensus        17 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H   96 (106)
T 2ee8_A           17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH   96 (106)
T ss_dssp             CCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHHHHHT
T ss_pred             CeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHHHHHh
Confidence            689999999875           566789999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeec
Q psy3500          70 TGDKPYIC   77 (98)
Q Consensus        70 ~~~~~~~C   77 (98)
                      .++++|..
T Consensus        97 ~~~~~~~~  104 (106)
T 2ee8_A           97 MQTSSPTA  104 (106)
T ss_dssp             TSCCCCCC
T ss_pred             CCCCCCcC
Confidence            99998864

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.81  E-value=1e-19  Score=89.62  Aligned_cols=74  Identities=36%  Similarity=0.753  Sum_probs=68.7

Q ss_pred             CCCCCCCCCccC-----------CCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhh
Q psy3500           1 MYHCKTCSTLSR-----------PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH   69 (98)
Q Consensus         1 ~~~c~~c~~~~~-----------~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~   69 (98)
                      ||+|+.|++.|.           +.++++|.|..|++.|.....|..|+..|.++++|.|.+|++.|.....|..|++.|
T Consensus         8 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   87 (96)
T 2dmd_A            8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSH   87 (96)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHHHTTC
T ss_pred             CeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHh
Confidence            799999998775           566789999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy3500          70 TGDKP   74 (98)
Q Consensus        70 ~~~~~   74 (98)
                      +++++
T Consensus        88 ~~~~~   92 (96)
T 2dmd_A           88 TGDSG   92 (96)
T ss_dssp             CSCCC
T ss_pred             cCCCC
Confidence            98764

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.81  E-value=1.1e-19  Score=96.40  Aligned_cols=86  Identities=23%  Similarity=0.369  Sum_probs=78.6

Q ss_pred             CCCCCceecCCCCCcCCCHHHHHHHHHH-hcCCCc--------eecCCCccccccchhHHHHHHhhCCCCCeecCc--Cc
Q psy3500          13 PNISYKYTCYACDYHTLMSEDMKKHMRK-HTGEKP--------YKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ--CR   81 (98)
Q Consensus        13 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~-h~~~~~--------~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~--C~   81 (98)
                      +..+..|.|..|++.|.....|..|+.. |.+..+        +.|..|++.|.....|..|++.|.++++|.|..  |+
T Consensus        20 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~   99 (155)
T 2rpc_A           20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCG   99 (155)
T ss_dssp             CTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTC
T ss_pred             chhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCC
Confidence            4456789999999999999999999997 776654        789999999999999999999999999999998  99


Q ss_pred             ccccChHHHHHHHhhhC
Q psy3500          82 DTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        82 ~~f~~~~~l~~H~~~h~   98 (98)
                      +.|.....|..|+++|+
T Consensus       100 ~~f~~~~~L~~H~~~h~  116 (155)
T 2rpc_A          100 KIFARSENLKIHKRTHT  116 (155)
T ss_dssp             CEESCHHHHHHHHTTTC
T ss_pred             CccCCHHHHHHHHHhhC
Confidence            99999999999999874

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.81  E-value=4.1e-20  Score=88.63  Aligned_cols=71  Identities=42%  Similarity=0.709  Sum_probs=65.4

Q ss_pred             CCCCCCCCCccC-----------CCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhh
Q psy3500           1 MYHCKTCSTLSR-----------PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH   69 (98)
Q Consensus         1 ~~~c~~c~~~~~-----------~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~   69 (98)
                      ||.|+.||+.|.           +.++++|.|..|++.|.....|..|+..|.+++++.|..|++.|.....|..|++.|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhh
Confidence            799999999875           456788999999999999999999999999999999999999999999999999988


Q ss_pred             CC
Q psy3500          70 TG   71 (98)
Q Consensus        70 ~~   71 (98)
                      +|
T Consensus        81 ~g   82 (82)
T 2kmk_A           81 TG   82 (82)
T ss_dssp             C-
T ss_pred             CC
Confidence            75

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.79  E-value=2.7e-19  Score=85.01  Aligned_cols=66  Identities=41%  Similarity=0.661  Sum_probs=61.7

Q ss_pred             CCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeec
Q psy3500          12 RPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC   77 (98)
Q Consensus        12 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C   77 (98)
                      ...++++|.|.+|++.|.....|..|+++|.++++|.|.+|++.|.....|..|++.|++++||.|
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            356678999999999999999999999999999999999999999999999999999999999987

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.79  E-value=2.9e-19  Score=87.04  Aligned_cols=73  Identities=29%  Similarity=0.587  Sum_probs=66.0

Q ss_pred             CCCCC--CCCCccC-----------CCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHH
Q psy3500           1 MYHCK--TCSTLSR-----------PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHER   67 (98)
Q Consensus         1 ~~~c~--~c~~~~~-----------~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~   67 (98)
                      ||.|+  .|++.|.           +.++++|.|..|++.|.....|..|+..|.++++|.|.+|++.|.....|..|++
T Consensus         4 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   83 (90)
T 1a1h_A            4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK   83 (90)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHG
T ss_pred             ceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHHHH
Confidence            68998  6999875           4567889999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCC
Q psy3500          68 KHTGDK   73 (98)
Q Consensus        68 ~~~~~~   73 (98)
                      +|++++
T Consensus        84 ~H~~~k   89 (90)
T 1a1h_A           84 IHLRQK   89 (90)
T ss_dssp             GGGC--
T ss_pred             HhcccC
Confidence            998875

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.77  E-value=1.1e-18  Score=86.12  Aligned_cols=72  Identities=15%  Similarity=0.257  Sum_probs=64.9

Q ss_pred             CcCCCHHHHHHHHHHhcCCCceecCCCcccc-ccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHH-HhhhC
Q psy3500          26 YHTLMSEDMKKHMRKHTGEKPYKCEYCAYSC-TQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNH-LQSHG   98 (98)
Q Consensus        26 ~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~-~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~   98 (98)
                      ..+.....+..|+..+.++++|.|+.|++.| .....|..|++.| ++++|.|..|++.|.....|..| +++|+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~   87 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHN   87 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcC
Confidence            3456667788888888899999999999999 8999999999999 99999999999999999999999 88874

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.77  E-value=1.7e-18  Score=81.60  Aligned_cols=63  Identities=35%  Similarity=0.741  Sum_probs=52.0

Q ss_pred             CCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCe
Q psy3500          13 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY   75 (98)
Q Consensus        13 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~   75 (98)
                      ..++++|.|..|++.|.....|..|+++|.++++|.|.+|++.|.....|..|++.|++++||
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            456678888888888888888888888888888888888888888888888888888888765

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.77  E-value=6.1e-19  Score=87.79  Aligned_cols=69  Identities=20%  Similarity=0.423  Sum_probs=62.9

Q ss_pred             CCCCCceecCCCCCcCCCHHHHHHHHH-Hh---cCCCceecCCCccccccchhHHHH-HHhhCCCCCeecCcCc
Q psy3500          13 PNISYKYTCYACDYHTLMSEDMKKHMR-KH---TGEKPYKCEYCAYSCTQSSALKIH-ERKHTGDKPYICQQCR   81 (98)
Q Consensus        13 ~~~~~~~~c~~C~~~~~~~~~l~~h~~-~h---~~~~~~~c~~c~~~~~~~~~l~~h-~~~~~~~~~~~C~~C~   81 (98)
                      ..++++|.|..|++.|.....|..|++ .|   .+++||.|.+|++.|.....|..| +++|++++||.|..+.
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            457889999999999999999999997 58   568899999999999999999999 8999999999997643

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=4.3e-19  Score=89.04  Aligned_cols=78  Identities=17%  Similarity=0.288  Sum_probs=70.0

Q ss_pred             CCCCCCCCCccCCCC---------CCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHH-hhC
Q psy3500           1 MYHCKTCSTLSRPNI---------SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHER-KHT   70 (98)
Q Consensus         1 ~~~c~~c~~~~~~~~---------~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~-~~~   70 (98)
                      ||+|+.|++.|....         .++|.|.+|++.|.....|..|++ |.++++|.|.+|++.|.....|..|++ .|+
T Consensus        16 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   94 (107)
T 1wjp_A           16 VYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSIWRHQVEVHN   94 (107)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHHHHHHHHTSC
T ss_pred             CeECCCCCCccCCHHHHHHHHHHCCCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHHHHHHHHHcC
Confidence            699999999886322         357999999999999999999996 999999999999999999999999997 899


Q ss_pred             CCCCeecCc
Q psy3500          71 GDKPYICQQ   79 (98)
Q Consensus        71 ~~~~~~C~~   79 (98)
                      ++++|.+..
T Consensus        95 ~~~~~~~~~  103 (107)
T 1wjp_A           95 QNNMAPTSG  103 (107)
T ss_dssp             CCCCCCCCC
T ss_pred             CCCCCCCCC
Confidence            999998753

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.76  E-value=4.8e-18  Score=82.01  Aligned_cols=74  Identities=14%  Similarity=0.274  Sum_probs=67.3

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCC----CceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccc
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGE----KPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTF   84 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~----~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f   84 (98)
                      ..+.++++|.|..|++.|.....|..|+..+...    ++|.|.+|++.|.....|..|++.|.+++++.|..|+..|
T Consensus         8 ~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A            8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCCCCC
T ss_pred             ceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCCCCC
Confidence            3577889999999999999999999999876654    7899999999999999999999999999999999998865

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.76  E-value=4.6e-18  Score=83.50  Aligned_cols=72  Identities=28%  Similarity=0.596  Sum_probs=65.4

Q ss_pred             CCCCCCCCCccC-----------CCCCCceecCCCCCcCCCHHHHHHHHHHhcCC--CceecCCCccccccchhHHHHHH
Q psy3500           1 MYHCKTCSTLSR-----------PNISYKYTCYACDYHTLMSEDMKKHMRKHTGE--KPYKCEYCAYSCTQSSALKIHER   67 (98)
Q Consensus         1 ~~~c~~c~~~~~-----------~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~--~~~~c~~c~~~~~~~~~l~~h~~   67 (98)
                      +|+|+.|++.|.           +.++++|.|..|++.|.....|..|++.|.++  ++|.|.+|++.|.....|..|++
T Consensus         7 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~~   86 (95)
T 2yt9_A            7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIK   86 (95)
T ss_dssp             CEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHHHH
T ss_pred             CeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHHHH
Confidence            689999999775           56778999999999999999999999999886  89999999999999999999986


Q ss_pred             -hhCCC
Q psy3500          68 -KHTGD   72 (98)
Q Consensus        68 -~~~~~   72 (98)
                       .|.++
T Consensus        87 ~~H~~~   92 (95)
T 2yt9_A           87 QVHSGP   92 (95)
T ss_dssp             HTSCCC
T ss_pred             HhcCCC
Confidence             67765

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=2e-19  Score=89.15  Aligned_cols=62  Identities=23%  Similarity=0.365  Sum_probs=32.6

Q ss_pred             CCCCCceecCCCCCcCC-CHHHHHHHHHHhcC-CCceecCCCccccccchhHHHHHHhhCCCCC
Q psy3500          13 PNISYKYTCYACDYHTL-MSEDMKKHMRKHTG-EKPYKCEYCAYSCTQSSALKIHERKHTGDKP   74 (98)
Q Consensus        13 ~~~~~~~~c~~C~~~~~-~~~~l~~h~~~h~~-~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   74 (98)
                      +.++++|.|..|++.|. ....|..|+++|.+ +++|.|.+|++.|.....|..|++.|++++|
T Consensus        19 h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp   82 (98)
T 2gqj_A           19 IHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP   82 (98)
T ss_dssp             TTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCS
T ss_pred             hccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            34444555555555555 55555555555544 4555555555555555555555555555544

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.74  E-value=3.6e-18  Score=80.13  Aligned_cols=61  Identities=38%  Similarity=0.560  Sum_probs=38.0

Q ss_pred             CCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCC
Q psy3500          12 RPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGD   72 (98)
Q Consensus        12 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   72 (98)
                      .+.++++|.|..|++.|.....|..|++.|.++++|.|.+|++.|.....|..|++.|+++
T Consensus         8 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A            8 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             ccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            4555566666666666666666666666666666666666666666666666666665554

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.74  E-value=4.8e-18  Score=76.23  Aligned_cols=55  Identities=35%  Similarity=0.657  Sum_probs=35.7

Q ss_pred             CCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHHHhhhC
Q psy3500          44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        44 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      +++|.|..|++.|.....|..|++.|++++||.|..|++.|.....|..|+++|+
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            3566666666666666666666666666667777777777777777777766653

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=1.4e-17  Score=77.65  Aligned_cols=64  Identities=28%  Similarity=0.593  Sum_probs=53.0

Q ss_pred             CCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCe
Q psy3500          12 RPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY   75 (98)
Q Consensus        12 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~   75 (98)
                      .++++++|.|..|++.|.....|..|+++|.++++|.|.+|++.|.....|..|++.|++++|.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            4567788888888888888888888888888888888888888888888888888888877654

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=9.3e-18  Score=78.29  Aligned_cols=58  Identities=33%  Similarity=0.709  Sum_probs=55.2

Q ss_pred             HhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHHHhhh
Q psy3500          40 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        40 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      ++.++++|.|.+|++.|.....|..|++.|+++++|.|..|++.|.....|..|+++|
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h   60 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF   60 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999999999887

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=3.2e-17  Score=76.85  Aligned_cols=60  Identities=43%  Similarity=0.760  Sum_probs=56.8

Q ss_pred             HHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHHHhhhC
Q psy3500          39 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        39 ~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      ++|.++++|.|++|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++|+
T Consensus         7 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~   66 (72)
T 1x6e_A            7 GIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT   66 (72)
T ss_dssp             CTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             cccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcC
Confidence            368889999999999999999999999999999999999999999999999999999873

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=7.2e-18  Score=77.79  Aligned_cols=58  Identities=26%  Similarity=0.455  Sum_probs=43.9

Q ss_pred             HhcCCCceecCCCccccccchhHHHHHHh-h-CCCCCeecCcCcccccChHHHHHHHhhh
Q psy3500          40 KHTGEKPYKCEYCAYSCTQSSALKIHERK-H-TGDKPYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        40 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~-~-~~~~~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      +|.++++|.|+.|++.|.....|..|++. | .++++|.|+.|++.|.....|..|++++
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~   63 (66)
T 2drp_A            4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII   63 (66)
T ss_dssp             EEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHH
T ss_pred             ccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHH
Confidence            46677777777777777777777777776 5 4777788888888888888888887765

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.71  E-value=2.6e-17  Score=77.53  Aligned_cols=59  Identities=34%  Similarity=0.689  Sum_probs=55.9

Q ss_pred             HhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHHHhhhC
Q psy3500          40 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        40 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      .+.++++|.|..|++.|.....|..|++.|+++++|.|..|++.|.....|..|+++|+
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~   69 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS   69 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcC
Confidence            46678899999999999999999999999999999999999999999999999999884

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=2.2e-18  Score=81.85  Aligned_cols=56  Identities=32%  Similarity=0.550  Sum_probs=27.9

Q ss_pred             CCCCCceecCCCCCcCCCHHHHHHHHH-HhcCC-CceecCCCccccccchhHHHHHHh
Q psy3500          13 PNISYKYTCYACDYHTLMSEDMKKHMR-KHTGE-KPYKCEYCAYSCTQSSALKIHERK   68 (98)
Q Consensus        13 ~~~~~~~~c~~C~~~~~~~~~l~~h~~-~h~~~-~~~~c~~c~~~~~~~~~l~~h~~~   68 (98)
                      ++++++|.|.+|++.|.....|..|+. .|.++ ++|.|++|++.|.....|..|++.
T Consensus        10 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~   67 (77)
T 2ct1_A           10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK   67 (77)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHH
T ss_pred             cCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHH
Confidence            444455555555555555555555544 34332 445555555555555555555443

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.71  E-value=2.3e-17  Score=79.57  Aligned_cols=52  Identities=23%  Similarity=0.350  Sum_probs=28.9

Q ss_pred             CCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHHH
Q psy3500          43 GEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHL   94 (98)
Q Consensus        43 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   94 (98)
                      ..+++.|++|++.|.....|..|+++|++++||.|..|++.|.....|..|+
T Consensus        25 ~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~   76 (85)
T 2lv2_A           25 SAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI   76 (85)
T ss_dssp             CCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHH
T ss_pred             CCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhC
Confidence            3444555555555555555555555555555555555555555555555554

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.70  E-value=8e-17  Score=78.12  Aligned_cols=70  Identities=27%  Similarity=0.669  Sum_probs=63.7

Q ss_pred             CCCCCC--CCCccC-----------CCCCCceecC--CCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHH
Q psy3500           1 MYHCKT--CSTLSR-----------PNISYKYTCY--ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIH   65 (98)
Q Consensus         1 ~~~c~~--c~~~~~-----------~~~~~~~~c~--~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h   65 (98)
                      +|.|+.  ||+.|.           +.++++|.|.  .|++.|.....|..|+..|.++++|.|+.|++.|.....|..|
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   84 (89)
T 2wbs_A            5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALH   84 (89)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHH
T ss_pred             CeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHHHH
Confidence            588999  998764           6678899997  6999999999999999999999999999999999999999999


Q ss_pred             HHhhC
Q psy3500          66 ERKHT   70 (98)
Q Consensus        66 ~~~~~   70 (98)
                      ++.|.
T Consensus        85 ~~~H~   89 (89)
T 2wbs_A           85 MKRHF   89 (89)
T ss_dssp             GGGGC
T ss_pred             HHhhC
Confidence            98773

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=2.1e-17  Score=83.19  Aligned_cols=70  Identities=29%  Similarity=0.515  Sum_probs=63.9

Q ss_pred             CCCCCCCCCccC-----------CCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhh
Q psy3500           1 MYHCKTCSTLSR-----------PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH   69 (98)
Q Consensus         1 ~~~c~~c~~~~~-----------~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~   69 (98)
                      ||.| .|++.|.           +.++++|.|..|++.|.....|..|++.|.++++|.|.+|++.|.....|..|++.+
T Consensus        10 ~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~   88 (110)
T 2csh_A           10 LYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSC   88 (110)
T ss_dssp             CEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHHHHHHH
T ss_pred             CEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHHHHHHc
Confidence            6899 8999875           456789999999999999999999999999999999999999999999999999876


Q ss_pred             CC
Q psy3500          70 TG   71 (98)
Q Consensus        70 ~~   71 (98)
                      ..
T Consensus        89 ~~   90 (110)
T 2csh_A           89 TK   90 (110)
T ss_dssp             HH
T ss_pred             cc
Confidence            43

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.69  E-value=5.6e-17  Score=83.70  Aligned_cols=78  Identities=17%  Similarity=0.270  Sum_probs=66.7

Q ss_pred             ceecCCCCCcC------CCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHH
Q psy3500          18 KYTCYACDYHT------LMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFR   91 (98)
Q Consensus        18 ~~~c~~C~~~~------~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~   91 (98)
                      .+.|.+|...|      .....|..|+ .|.+++||.|..|++.|.....|..|++.|  ++||.|..|++.|.....|.
T Consensus        41 ~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~  117 (129)
T 2wbt_A           41 RLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSAL  117 (129)
T ss_dssp             HHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHH
T ss_pred             cccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHH
Confidence            45566665544      4566677776 588899999999999999999999999998  88999999999999999999


Q ss_pred             HHHhhhC
Q psy3500          92 NHLQSHG   98 (98)
Q Consensus        92 ~H~~~h~   98 (98)
                      .|+++|+
T Consensus       118 ~H~~~h~  124 (129)
T 2wbt_A          118 DHVCKKH  124 (129)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHC
Confidence            9999874

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.69  E-value=6e-17  Score=72.60  Aligned_cols=55  Identities=33%  Similarity=0.700  Sum_probs=33.5

Q ss_pred             ceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCC
Q psy3500          18 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGD   72 (98)
Q Consensus        18 ~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   72 (98)
                      ||.|..|++.|.....|..|+++|.++++|.|+.|++.|.....|..|+++|.++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   55 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS   55 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhccc
Confidence            3556666666666666666666666666666666666666666666666655544

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.69  E-value=9.8e-17  Score=71.88  Aligned_cols=56  Identities=38%  Similarity=0.721  Sum_probs=50.2

Q ss_pred             CCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhC
Q psy3500          15 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHT   70 (98)
Q Consensus        15 ~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~   70 (98)
                      ++++|.|..|++.|.....|..|+++|.++++|.|+.|++.|.....|..|++.+.
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            46789999999999999999999999999999999999999999999999998775

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.69  E-value=1.4e-16  Score=76.87  Aligned_cols=61  Identities=18%  Similarity=0.360  Sum_probs=55.4

Q ss_pred             CCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHH-HhhCCCC
Q psy3500          13 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHE-RKHTGDK   73 (98)
Q Consensus        13 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~-~~~~~~~   73 (98)
                      +...++|.|++|++.|.....|..|+++|.+++||.|.+|++.|.....|..|+ +.|++++
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            445678999999999999999999999999999999999999999999999996 5687764

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=7.4e-17  Score=76.47  Aligned_cols=58  Identities=36%  Similarity=0.719  Sum_probs=54.9

Q ss_pred             hcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHHHhhhC
Q psy3500          41 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        41 h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      +.++++|.|.+|++.|.....|..|++.|+++++|.|..|++.|.....|..|+++|+
T Consensus        13 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~   70 (77)
T 2cot_A           13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT   70 (77)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSC
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhC
Confidence            4567899999999999999999999999999999999999999999999999999884

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.68  E-value=1.3e-16  Score=78.85  Aligned_cols=71  Identities=31%  Similarity=0.723  Sum_probs=64.2

Q ss_pred             CCCCCC--CCCccC-----------CCCCCceecC--CCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHH
Q psy3500           1 MYHCKT--CSTLSR-----------PNISYKYTCY--ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIH   65 (98)
Q Consensus         1 ~~~c~~--c~~~~~-----------~~~~~~~~c~--~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h   65 (98)
                      +|.|+.  |++.|.           +.++++|.|.  .|++.|.....|..|++.|.++++|.|.+|++.|.....|..|
T Consensus        15 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   94 (100)
T 2ebt_A           15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALH   94 (100)
T ss_dssp             CEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHHHH
T ss_pred             ceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHHHH
Confidence            578986  999775           5667899996  6999999999999999999999999999999999999999999


Q ss_pred             HHhhCC
Q psy3500          66 ERKHTG   71 (98)
Q Consensus        66 ~~~~~~   71 (98)
                      ++.|++
T Consensus        95 ~~~H~~  100 (100)
T 2ebt_A           95 MKRHQN  100 (100)
T ss_dssp             HHHHCC
T ss_pred             HHHhCC
Confidence            998864

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=2e-17  Score=79.77  Aligned_cols=65  Identities=28%  Similarity=0.581  Sum_probs=58.6

Q ss_pred             HHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCC----CCeecCcCcccccChHHHHHHHhhhC
Q psy3500          34 MKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGD----KPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        34 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~----~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      +..|+++|.++++|.|.+|++.|.....|..|++.+..+    ++|.|..|++.|.....|..|+++|+
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   71 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCA   71 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCC
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHcc
Confidence            445778899999999999999999999999999876654    78999999999999999999999874

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=8.7e-17  Score=75.46  Aligned_cols=59  Identities=32%  Similarity=0.645  Sum_probs=52.1

Q ss_pred             HhcCCCceecC--CCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHHHhhhC
Q psy3500          40 KHTGEKPYKCE--YCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        40 ~h~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      .+.++++|.|+  .|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++|+
T Consensus        13 ~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             cCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            46778889997  599999999999999999999999999999999999999999998885

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.67  E-value=2.2e-16  Score=70.70  Aligned_cols=53  Identities=34%  Similarity=0.635  Sum_probs=50.7

Q ss_pred             ceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHHHhhhC
Q psy3500          46 PYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        46 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      ||.|..|++.|.....|..|++.|+++++|.|..|++.|.....|..|+++|+
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   53 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA   53 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhc
Confidence            58899999999999999999999999999999999999999999999999874

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=9.9e-17  Score=76.19  Aligned_cols=65  Identities=18%  Similarity=0.365  Sum_probs=54.6

Q ss_pred             CCCCCceecCCCCCcCCCHHHHHHHHHHhcC---CCceecCCCccccccchhHHHHH-HhhCCCCCeec
Q psy3500          13 PNISYKYTCYACDYHTLMSEDMKKHMRKHTG---EKPYKCEYCAYSCTQSSALKIHE-RKHTGDKPYIC   77 (98)
Q Consensus        13 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~---~~~~~c~~c~~~~~~~~~l~~h~-~~~~~~~~~~C   77 (98)
                      ++++++|.|.+|++.|.....|..|+++|.+   +++|.|.+|++.|.....|..|+ ..|.++++...
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~   70 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ   70 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCS
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCcc
Confidence            5678899999999999999999999988875   78899999999999999999998 56777666543

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=7e-17  Score=79.89  Aligned_cols=71  Identities=18%  Similarity=0.216  Sum_probs=64.1

Q ss_pred             CCCHHHHHHHHHHhcCCCceecCCCccccc-cchhHHHHHHhhCC-CCCeecCcCcccccChHHHHHHHhhhC
Q psy3500          28 TLMSEDMKKHMRKHTGEKPYKCEYCAYSCT-QSSALKIHERKHTG-DKPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        28 ~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~-~~~~l~~h~~~~~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      +.....+..|+++|.++++|.|.+|++.|. ....|..|++.|++ +++|.|..|++.|.....|..|+++|+
T Consensus         6 ~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~   78 (98)
T 2gqj_A            6 SGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH   78 (98)
T ss_dssp             CCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHS
T ss_pred             CCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHc
Confidence            333445678899999999999999999999 99999999999998 999999999999999999999998874

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=3.3e-16  Score=76.83  Aligned_cols=64  Identities=22%  Similarity=0.241  Sum_probs=58.6

Q ss_pred             CCCceecCCCCCcCCCHHHHHHHHHH-hcCCCc--------eecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          15 ISYKYTCYACDYHTLMSEDMKKHMRK-HTGEKP--------YKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        15 ~~~~~~c~~C~~~~~~~~~l~~h~~~-h~~~~~--------~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      ....+.|..|++.|.....|..|++. |.++++        +.|..|++.|.....|..|+++|++++||.|.
T Consensus        22 ~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SCSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CcCCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            34567899999999999999999997 888877        89999999999999999999999999999986

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=3.2e-16  Score=70.87  Aligned_cols=54  Identities=35%  Similarity=0.714  Sum_probs=32.0

Q ss_pred             ceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHH-HhhCC
Q psy3500          18 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHE-RKHTG   71 (98)
Q Consensus        18 ~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~-~~~~~   71 (98)
                      +|.|..|++.|.....|..|+++|.++++|.|+.|++.|.....|..|+ ..|.+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             cCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            4556666666666666666666666555666666666666666666664 34444

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=5.9e-16  Score=76.34  Aligned_cols=61  Identities=20%  Similarity=0.307  Sum_probs=55.4

Q ss_pred             CCCCceecCCCCCcC-CCHHHHHHHHHHhcCCCceecCCCccccccchhHHHH-HHhhCCCCCe
Q psy3500          14 NISYKYTCYACDYHT-LMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIH-ERKHTGDKPY   75 (98)
Q Consensus        14 ~~~~~~~c~~C~~~~-~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h-~~~~~~~~~~   75 (98)
                      .++++|.|..|++.| .....|..|+++| ++++|.|.+|++.|.....|..| ++.|+++..+
T Consensus        30 ~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~~   92 (96)
T 2ctd_A           30 VDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSG   92 (96)
T ss_dssp             HHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSSC
T ss_pred             cCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCCC
Confidence            346789999999999 9999999999999 99999999999999999999999 8889876444

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=6.8e-16  Score=73.25  Aligned_cols=56  Identities=27%  Similarity=0.630  Sum_probs=52.6

Q ss_pred             hcCCCceecCCCccccccchhHHHHHHhhCC---CCCeecCcCcccccChHHHHHHHhh
Q psy3500          41 HTGEKPYKCEYCAYSCTQSSALKIHERKHTG---DKPYICQQCRDTFSSLYLFRNHLQS   96 (98)
Q Consensus        41 h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~---~~~~~C~~C~~~f~~~~~l~~H~~~   96 (98)
                      |.++++|.|.+|++.|.....|..|++.|.+   +++|.|..|++.|.....|..|++.
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~   60 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK   60 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHH
Confidence            6789999999999999999999999999985   8899999999999999999999954

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=1.9e-17  Score=83.88  Aligned_cols=78  Identities=19%  Similarity=0.197  Sum_probs=65.0

Q ss_pred             CCCCCCCCCccC-------------CCCCCc-eecCCCCCcC--CCHHHHHHHHHHhcCCCceecCCCccccccchhHHH
Q psy3500           1 MYHCKTCSTLSR-------------PNISYK-YTCYACDYHT--LMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKI   64 (98)
Q Consensus         1 ~~~c~~c~~~~~-------------~~~~~~-~~c~~C~~~~--~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~   64 (98)
                      ||+|++||+.|.             +.++.+ +.|..|++.|  .....|..|+++|.++++|.|.+|++.|.....|..
T Consensus        19 ~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~   98 (115)
T 2dmi_A           19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSV   98 (115)
T ss_dssp             SEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHH
T ss_pred             CEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCCCCCccCCHHHHHH
Confidence            689999998765             333444 4599999998  888899999999999999999999999999999999


Q ss_pred             HHHhhCCCCCeecC
Q psy3500          65 HERKHTGDKPYICQ   78 (98)
Q Consensus        65 h~~~~~~~~~~~C~   78 (98)
                      |++.+........+
T Consensus        99 H~~~hh~~~~~~~~  112 (115)
T 2dmi_A           99 HMIKTKHYQKVSGP  112 (115)
T ss_dssp             HHHHTTTTTCSCCC
T ss_pred             HHHHhCCcccCCCC
Confidence            99987765554443

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=5.3e-16  Score=71.41  Aligned_cols=60  Identities=18%  Similarity=0.354  Sum_probs=55.1

Q ss_pred             CCCCCCceecCCCCCcCCCHHHHHHHHHH-h-cCCCceecCCCccccccchhHHHHHHhhCC
Q psy3500          12 RPNISYKYTCYACDYHTLMSEDMKKHMRK-H-TGEKPYKCEYCAYSCTQSSALKIHERKHTG   71 (98)
Q Consensus        12 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~-h-~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   71 (98)
                      .++++++|.|..|++.|.....|..|+.. | .++++|.|+.|++.|.....|..|++.+.+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            46788999999999999999999999987 7 588999999999999999999999988764

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.62  E-value=8.9e-16  Score=74.42  Aligned_cols=55  Identities=31%  Similarity=0.658  Sum_probs=52.2

Q ss_pred             CCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHHHhhhC
Q psy3500          44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        44 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      ++||.|..|++.|.....|..|++.|+++++|.|..|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~   55 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH   55 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhC
Confidence            4689999999999999999999999999999999999999999999999998874

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=7.7e-16  Score=76.58  Aligned_cols=57  Identities=23%  Similarity=0.554  Sum_probs=52.5

Q ss_pred             cCCCceecCCCccccccchhHHHHHH-hh---CCCCCeecCcCcccccChHHHHHH-HhhhC
Q psy3500          42 TGEKPYKCEYCAYSCTQSSALKIHER-KH---TGDKPYICQQCRDTFSSLYLFRNH-LQSHG   98 (98)
Q Consensus        42 ~~~~~~~c~~c~~~~~~~~~l~~h~~-~~---~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~   98 (98)
                      .+++||.|..|++.|.....|..|++ .|   ++++||.|..|++.|.....|..| +++|+
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Ht   75 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHP   75 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTST
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcC
Confidence            57889999999999999999999997 58   668999999999999999999999 78874

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.62  E-value=6.9e-16  Score=74.10  Aligned_cols=66  Identities=24%  Similarity=0.584  Sum_probs=60.4

Q ss_pred             CCCC--CCCCCccC-----------CCCCCceecCC--CCCcCCCHHHHHHHHHHhcCCCceecCC---CccccccchhH
Q psy3500           1 MYHC--KTCSTLSR-----------PNISYKYTCYA--CDYHTLMSEDMKKHMRKHTGEKPYKCEY---CAYSCTQSSAL   62 (98)
Q Consensus         1 ~~~c--~~c~~~~~-----------~~~~~~~~c~~--C~~~~~~~~~l~~h~~~h~~~~~~~c~~---c~~~~~~~~~l   62 (98)
                      ||+|  +.||+.|.           +.++++|.|..  |++.|.....|..|+++|.+   +.|..   |++.|.....|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l   77 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLY   77 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHH
Confidence            7999  99999875           45678999988  99999999999999999988   99999   99999999999


Q ss_pred             HHHHHhh
Q psy3500          63 KIHERKH   69 (98)
Q Consensus        63 ~~h~~~~   69 (98)
                      ..|++.+
T Consensus        78 ~~H~~~h   84 (85)
T 2j7j_A           78 LKHVAEC   84 (85)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhc
Confidence            9998875

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=1.9e-15  Score=68.29  Aligned_cols=54  Identities=33%  Similarity=0.694  Sum_probs=50.4

Q ss_pred             CceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHHH-hhhC
Q psy3500          45 KPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHL-QSHG   98 (98)
Q Consensus        45 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~   98 (98)
                      +||.|..|++.|.....|..|++.|+++++|.|..|++.|.....|..|+ ++|+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~   55 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS   55 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcC
Confidence            47899999999999999999999999999999999999999999999996 5663

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=8.8e-16  Score=70.78  Aligned_cols=58  Identities=14%  Similarity=0.243  Sum_probs=40.2

Q ss_pred             CCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecC-CCccccccchhHHHHHHhhCCCCC
Q psy3500          15 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE-YCAYSCTQSSALKIHERKHTGDKP   74 (98)
Q Consensus        15 ~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~-~c~~~~~~~~~l~~h~~~~~~~~~   74 (98)
                      ++++|.|..|++.|. ...|..|+++ .+++||.|+ .|++.|.....|..|+++|...++
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            345677777777777 7777777766 667777777 777777777777777776655443

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=1.3e-14  Score=68.58  Aligned_cols=63  Identities=33%  Similarity=0.611  Sum_probs=57.2

Q ss_pred             HHHHHHhcCCCceecCCCccccccchhHHHHHH-hhCCC-CCeecCcCcccccChHHHHHHHhhh
Q psy3500          35 KKHMRKHTGEKPYKCEYCAYSCTQSSALKIHER-KHTGD-KPYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        35 ~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~-~~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      ..|+++|.++++|.|.+|++.|.....|..|++ .|.++ ++|.|..|++.|.....|..|++++
T Consensus         4 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~   68 (77)
T 2ct1_A            4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQ   68 (77)
T ss_dssp             CCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHh
Confidence            356778999999999999999999999999997 67764 8999999999999999999999875

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=8.1e-15  Score=68.62  Aligned_cols=59  Identities=34%  Similarity=0.679  Sum_probs=54.3

Q ss_pred             CCCCCCceecC--CCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhC
Q psy3500          12 RPNISYKYTCY--ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHT   70 (98)
Q Consensus        12 ~~~~~~~~~c~--~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~   70 (98)
                      .+.++++|.|+  .|++.|.....|..|++.|.++++|.|++|++.|.....|..|++.|+
T Consensus        13 ~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             cCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            36678899997  599999999999999999999999999999999999999999998764

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=6.3e-15  Score=67.86  Aligned_cols=53  Identities=21%  Similarity=0.436  Sum_probs=50.3

Q ss_pred             CCCceecCCCccccccchhHHHHHHhhCCCCCeecC-cCcccccChHHHHHHHhhh
Q psy3500          43 GEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ-QCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        43 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~-~C~~~f~~~~~l~~H~~~h   97 (98)
                      +++|+.|..|++.|. ...|..|++. ++++||.|. .|++.|.....|..|+++|
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~h   60 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDS   60 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTT
T ss_pred             CCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhh
Confidence            567899999999999 9999999998 999999999 9999999999999999987

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.56  E-value=7.7e-15  Score=68.56  Aligned_cols=56  Identities=32%  Similarity=0.622  Sum_probs=43.3

Q ss_pred             cCCCceecCC--CccccccchhHHHHHHhhCCCCCeecCc--CcccccChHHHHHHHhhh
Q psy3500          42 TGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        42 ~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h   97 (98)
                      ...+++.|..  |++.|.....|..|++.|+++++|.|..  |++.|.....|..|+++|
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            3456677777  8888888888888888888888888854  888888888888887765

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=4.8e-14  Score=66.84  Aligned_cols=56  Identities=21%  Similarity=0.614  Sum_probs=52.2

Q ss_pred             cCCCceecCC--CccccccchhHHHHHH-hhCCCCCeecCc--CcccccChHHHHHHHhhh
Q psy3500          42 TGEKPYKCEY--CAYSCTQSSALKIHER-KHTGDKPYICQQ--CRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        42 ~~~~~~~c~~--c~~~~~~~~~l~~h~~-~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h   97 (98)
                      ++++++.|..  |++.|.....|..|++ .|.++++|.|..  |++.|.....|..|+++|
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H   63 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH   63 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHh
Confidence            4677899987  9999999999999999 799999999999  999999999999999987

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.49  E-value=3.5e-14  Score=62.90  Aligned_cols=44  Identities=30%  Similarity=0.512  Sum_probs=23.3

Q ss_pred             cCCCceecCCCccccccchhHHHHHH-hhCCCCCeecCcCccccc
Q psy3500          42 TGEKPYKCEYCAYSCTQSSALKIHER-KHTGDKPYICQQCRDTFS   85 (98)
Q Consensus        42 ~~~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~~~~~C~~C~~~f~   85 (98)
                      .++++|.|.+|++.|.....|..|++ .|++++||.|..|++.|.
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~   52 (54)
T 2eps_A            8 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS   52 (54)
T ss_dssp             CSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence            34445555555555555555555544 455555555555555554

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=8e-15  Score=62.84  Aligned_cols=44  Identities=41%  Similarity=0.548  Sum_probs=30.2

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34456666777777777777777777777777777777777655

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=9.7e-15  Score=62.60  Aligned_cols=44  Identities=41%  Similarity=0.667  Sum_probs=32.4

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44566777777777777777777777777777777777777665

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=8.1e-15  Score=62.84  Aligned_cols=44  Identities=34%  Similarity=0.634  Sum_probs=32.5

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|.+|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            44566777777777777777777777777777777777777765

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.49  E-value=8.7e-15  Score=62.78  Aligned_cols=44  Identities=39%  Similarity=0.628  Sum_probs=31.6

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|.+|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34456677777777777777777777777777777777777665

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=7.9e-15  Score=62.31  Aligned_cols=42  Identities=29%  Similarity=0.558  Sum_probs=26.7

Q ss_pred             HHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          39 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        39 ~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      ++|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            345566666666666666666666666666666666666554

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=8.1e-15  Score=62.88  Aligned_cols=44  Identities=32%  Similarity=0.529  Sum_probs=33.5

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44567777778888888888888888888877877778877765

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=7.4e-15  Score=62.97  Aligned_cols=44  Identities=41%  Similarity=0.563  Sum_probs=32.0

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            34456677777777777777777777777777777777777665

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=8e-15  Score=62.86  Aligned_cols=44  Identities=41%  Similarity=0.595  Sum_probs=32.3

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|+.|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            44566777777777777777777777777777777777777765

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=1.3e-14  Score=62.17  Aligned_cols=44  Identities=39%  Similarity=0.636  Sum_probs=34.1

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|++|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44567777788888888888888888888888888888887765

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.48  E-value=3.1e-14  Score=73.33  Aligned_cols=58  Identities=21%  Similarity=0.287  Sum_probs=54.0

Q ss_pred             CCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCC
Q psy3500          13 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGD   72 (98)
Q Consensus        13 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   72 (98)
                      +.++++|.|..|++.|.....|..|+++|  ++||.|..|++.|.....|..|++.|++.
T Consensus        69 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           69 SKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             hCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            45678999999999999999999999998  78999999999999999999999999875

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.48  E-value=9e-15  Score=62.69  Aligned_cols=44  Identities=39%  Similarity=0.557  Sum_probs=34.6

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             cccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44567777888888888888888888888888888888888765

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.48  E-value=1.1e-14  Score=62.42  Aligned_cols=44  Identities=39%  Similarity=0.577  Sum_probs=33.9

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            44567777788888888888888888888888888888887765

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=1.5e-14  Score=62.03  Aligned_cols=44  Identities=36%  Similarity=0.466  Sum_probs=31.9

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             cccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44566777777777777777777777777777777777777654

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.48  E-value=1e-14  Score=62.54  Aligned_cols=44  Identities=36%  Similarity=0.550  Sum_probs=31.4

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44556677777777777777777777777777777777777655

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=9.6e-15  Score=62.61  Aligned_cols=43  Identities=33%  Similarity=0.572  Sum_probs=28.0

Q ss_pred             HHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          38 MRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        38 ~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      +++|.++++|.|.+|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            4 GSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            3455666666666666666666666666666666666666654

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=1.2e-14  Score=62.33  Aligned_cols=44  Identities=34%  Similarity=0.545  Sum_probs=29.6

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            34456666677777777777777777777777777777776655

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=1e-14  Score=62.57  Aligned_cols=43  Identities=33%  Similarity=0.502  Sum_probs=29.2

Q ss_pred             HHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          38 MRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        38 ~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      +++|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            4 GSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            3456666677777777777777777777777777777776655

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.47  E-value=8.8e-15  Score=62.75  Aligned_cols=43  Identities=40%  Similarity=0.638  Sum_probs=26.2

Q ss_pred             HHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          38 MRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        38 ~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      +++|.++++|.|.+|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            4 GSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3445556666666666666666666666666666666666554

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=9.3e-15  Score=62.65  Aligned_cols=44  Identities=34%  Similarity=0.494  Sum_probs=28.6

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34456666666666666666666666666666666666666654

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=9e-15  Score=62.68  Aligned_cols=44  Identities=45%  Similarity=0.588  Sum_probs=31.9

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|.+|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44556677777777777777777777777777777777777665

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=1.3e-14  Score=62.14  Aligned_cols=44  Identities=43%  Similarity=0.652  Sum_probs=36.2

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|.+|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             cccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45677888888888888888888888888888888888888766

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=1.1e-14  Score=62.39  Aligned_cols=44  Identities=39%  Similarity=0.526  Sum_probs=32.2

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|.+|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34456677777777777777777777777777777777777665

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.47  E-value=9.7e-15  Score=62.60  Aligned_cols=44  Identities=32%  Similarity=0.560  Sum_probs=31.4

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|+.|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            34456677777777777777777777777777777777777665

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=1.1e-14  Score=62.46  Aligned_cols=44  Identities=43%  Similarity=0.582  Sum_probs=29.0

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            34456666667777777777766667777666666666666654

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=9.3e-15  Score=62.64  Aligned_cols=43  Identities=37%  Similarity=0.559  Sum_probs=26.7

Q ss_pred             HHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          38 MRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        38 ~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      +++|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            4 GSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             cccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            3455566666666666666666666666666666666666554

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=1.3e-14  Score=62.20  Aligned_cols=44  Identities=34%  Similarity=0.437  Sum_probs=33.0

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|.+|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44566777778888888888877778788777777777777765

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=1.1e-14  Score=62.46  Aligned_cols=44  Identities=39%  Similarity=0.548  Sum_probs=32.0

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34456677777777777777777777777777777777777665

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=1.3e-14  Score=62.21  Aligned_cols=43  Identities=42%  Similarity=0.604  Sum_probs=26.6

Q ss_pred             HHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          38 MRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        38 ~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      +++|.++++|.|.+|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            4 GSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            3445556666666666666666666666666666666666554

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=1.4e-14  Score=62.05  Aligned_cols=43  Identities=23%  Similarity=0.184  Sum_probs=29.5

Q ss_pred             HHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          38 MRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        38 ~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      +++|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            4 GSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             ccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3456666677777777777777777777777777777777655

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=8.6e-15  Score=62.77  Aligned_cols=44  Identities=36%  Similarity=0.566  Sum_probs=28.7

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            34456666666666666666666666666666666666666654

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=9.4e-15  Score=62.67  Aligned_cols=44  Identities=25%  Similarity=0.384  Sum_probs=28.6

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|..|++.|...+.|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            34456666666666666666666666666666666666666654

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=9.8e-15  Score=62.58  Aligned_cols=43  Identities=35%  Similarity=0.548  Sum_probs=28.2

Q ss_pred             HHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          38 MRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        38 ~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      +++|.++++|.|.+|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            4 GSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3456666666666666666666666666666666666666654

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=1e-14  Score=62.58  Aligned_cols=44  Identities=30%  Similarity=0.392  Sum_probs=32.3

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|.+|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44556677777777777777777777777777777777777765

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=1.1e-14  Score=62.42  Aligned_cols=43  Identities=37%  Similarity=0.529  Sum_probs=26.4

Q ss_pred             HHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          38 MRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        38 ~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      +++|.++++|.|.+|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            4 GSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3445556666666666666666666666666666666666554

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1e-14  Score=62.55  Aligned_cols=44  Identities=45%  Similarity=0.607  Sum_probs=32.2

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|.+|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            34456777777777777777777777777777777777777665

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.6e-14  Score=61.90  Aligned_cols=43  Identities=35%  Similarity=0.561  Sum_probs=29.4

Q ss_pred             HHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          38 MRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        38 ~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      +++|.++++|.|.+|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            4 GSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            3456666677777777777777777777777777777776655

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1.2e-14  Score=62.33  Aligned_cols=43  Identities=37%  Similarity=0.586  Sum_probs=28.2

Q ss_pred             HHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          38 MRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        38 ~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      +++|.++++|.|.+|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            4 GSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             SSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            3456666666666666666666666666666666666666654

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.2e-14  Score=62.32  Aligned_cols=44  Identities=32%  Similarity=0.419  Sum_probs=33.0

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|++|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44566777777888888888777777777777777777777765

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.6e-16  Score=74.34  Aligned_cols=62  Identities=19%  Similarity=0.237  Sum_probs=55.2

Q ss_pred             CCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          12 RPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        12 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      .+.++++|.|..|++.|.....|..       ++++.|..|++.|.....|..|++.|+++++|.|..|
T Consensus        12 ~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           12 IHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             HhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            4677899999999999988777664       6789999999999999999999999999999999876

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.46  E-value=2.7e-13  Score=63.24  Aligned_cols=58  Identities=33%  Similarity=0.635  Sum_probs=52.2

Q ss_pred             CCCCCCceecCC--CCCcCCCHHHHHHHHHHhcCCCceecCC--CccccccchhHHHHHHhh
Q psy3500          12 RPNISYKYTCYA--CDYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKH   69 (98)
Q Consensus        12 ~~~~~~~~~c~~--C~~~~~~~~~l~~h~~~h~~~~~~~c~~--c~~~~~~~~~l~~h~~~~   69 (98)
                      ..+..++|.|..  |++.|.....|..|++.|.++++|.|.+  |++.|.....|..|+++|
T Consensus        11 ~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            455678899988  9999999999999999999999999965  999999999999998754

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.46  E-value=1.8e-14  Score=61.74  Aligned_cols=43  Identities=33%  Similarity=0.499  Sum_probs=30.4

Q ss_pred             HHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          38 MRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        38 ~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      +++|.++++|.|.+|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            4 GSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3456667777777777777777777777777777777777655

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1.1e-14  Score=62.36  Aligned_cols=44  Identities=36%  Similarity=0.531  Sum_probs=29.7

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34456666677777777777777777777777777777776654

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=9.9e-15  Score=62.58  Aligned_cols=44  Identities=41%  Similarity=0.590  Sum_probs=35.8

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|.+|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45567778888888888888888888888888888888888776

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1.1e-14  Score=62.40  Aligned_cols=44  Identities=43%  Similarity=0.650  Sum_probs=28.7

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|.+|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            34456666666666666666666666666666666666666654

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=1.1e-14  Score=62.46  Aligned_cols=44  Identities=36%  Similarity=0.625  Sum_probs=30.7

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|++|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            34456667777777777777777777777777777777777665

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=1.5e-14  Score=61.99  Aligned_cols=43  Identities=40%  Similarity=0.648  Sum_probs=27.9

Q ss_pred             HHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          38 MRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        38 ~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      +++|.++++|.|.+|++.|.....|..|++.|++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            4 GSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            3455666666666666666666666666666666666666654

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=2.1e-14  Score=61.53  Aligned_cols=44  Identities=39%  Similarity=0.597  Sum_probs=32.6

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44567777777777777777777777777777777777777653

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=1.8e-14  Score=61.76  Aligned_cols=42  Identities=36%  Similarity=0.568  Sum_probs=24.4

Q ss_pred             HHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          39 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        39 ~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      ++|.++++|.|++|++.|.....|..|++.|++++||.|..|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            5 SSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            345555556666666666666666666655655566655544

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=1.4e-14  Score=62.15  Aligned_cols=41  Identities=39%  Similarity=0.622  Sum_probs=20.4

Q ss_pred             HhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          40 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        40 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      +|.++++|.|.+|++.|.....|..|++.|++++||.|..|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            6 SGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34444455555555555555555555555555555555443

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.44  E-value=2.8e-13  Score=59.91  Aligned_cols=48  Identities=23%  Similarity=0.486  Sum_probs=44.0

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHH-HhcCCCceecCCCcccccc
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMR-KHTGEKPYKCEYCAYSCTQ   58 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~-~h~~~~~~~c~~c~~~~~~   58 (98)
                      ..+.++++|.|.+|++.|.....|..|++ +|.++++|.|.+|++.|.+
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            34677899999999999999999999997 8999999999999999875

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=2.9e-14  Score=61.29  Aligned_cols=43  Identities=37%  Similarity=0.530  Sum_probs=28.5

Q ss_pred             HHHhcCCCceecCCCccccccchhHHHHHH-hhCCCCCeecCcC
Q psy3500          38 MRKHTGEKPYKCEYCAYSCTQSSALKIHER-KHTGDKPYICQQC   80 (98)
Q Consensus        38 ~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~~~~~C~~C   80 (98)
                      +++|.++++|.|.+|++.|.....|..|++ .|++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            4 GSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            345666666677777777776666666766 6666666666654

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=5.5e-14  Score=60.20  Aligned_cols=42  Identities=38%  Similarity=0.587  Sum_probs=26.9

Q ss_pred             HHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCc
Q psy3500          38 MRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ   79 (98)
Q Consensus        38 ~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~   79 (98)
                      +++|.++++|.|.+|++.|.....|..|++.|++++||.|..
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em2_A            4 GSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSC
T ss_pred             CCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            345566666666666666666666666666666666666654

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.41  E-value=1.6e-13  Score=58.49  Aligned_cols=40  Identities=28%  Similarity=0.566  Sum_probs=19.8

Q ss_pred             hcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          41 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        41 h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      |.++++|.|.+|++.|.....|..|++.|+++++|.|+.|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~c   44 (45)
T 2epq_A            5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSS   44 (45)
T ss_dssp             CSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCC
T ss_pred             cCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCC
Confidence            3444445555555555555555555555555555555444

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.40  E-value=7.5e-14  Score=58.61  Aligned_cols=40  Identities=28%  Similarity=0.587  Sum_probs=28.2

Q ss_pred             HHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          39 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        39 ~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      ++|.++++|.|..|++.|.....|..|++.|++++||.|+
T Consensus         3 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             SSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            4566677777777777777777777777777777777663

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.40  E-value=2.3e-13  Score=58.76  Aligned_cols=42  Identities=26%  Similarity=0.460  Sum_probs=26.8

Q ss_pred             hcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcc
Q psy3500          41 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD   82 (98)
Q Consensus        41 h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~   82 (98)
                      +.++++|.|.+|++.|.....|..|+++|++++||.|..|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            345556666666666666666666666666666666666653

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=8e-14  Score=59.68  Aligned_cols=42  Identities=36%  Similarity=0.604  Sum_probs=28.2

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            344566666777777777777777777777777777777665

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.39  E-value=8.9e-15  Score=66.64  Aligned_cols=49  Identities=18%  Similarity=0.318  Sum_probs=32.8

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChH
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLY   88 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~   88 (98)
                      |+++|.+++||.|+.|++.|.....|.   +.|++++||.|..|++.|....
T Consensus         5 h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~   53 (62)
T 1vd4_A            5 DERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDE   53 (62)
T ss_dssp             CSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECT
T ss_pred             HHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCc
Confidence            445566777777777777777666554   5677777777777777776543

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.38  E-value=6e-14  Score=62.10  Aligned_cols=50  Identities=22%  Similarity=0.248  Sum_probs=38.0

Q ss_pred             CcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCe
Q psy3500          26 YHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY   75 (98)
Q Consensus        26 ~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~   75 (98)
                      +.|.....|..|+++|.++++|.|.+|++.|.....|..|+++|++++||
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            34555556677777788888888888888888888888888888887776

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.38  E-value=1.1e-13  Score=59.26  Aligned_cols=42  Identities=43%  Similarity=0.644  Sum_probs=27.9

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            344566666677777777777777777776667666666665

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=9.3e-14  Score=59.48  Aligned_cols=41  Identities=32%  Similarity=0.555  Sum_probs=26.0

Q ss_pred             HHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          38 MRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        38 ~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      +++|.++++|.|.+|++.|.....|..|+++|+++++|.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            4 GSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            34455666666666666666666666666666666666664

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.38  E-value=8.7e-13  Score=56.11  Aligned_cols=43  Identities=21%  Similarity=0.315  Sum_probs=40.2

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCc
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCA   53 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~   53 (98)
                      ..++++++|.|.+|++.|.....|..|+++|.+++++.|+.|+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            4578899999999999999999999999999999999999986

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=6.8e-13  Score=64.86  Aligned_cols=53  Identities=21%  Similarity=0.350  Sum_probs=49.0

Q ss_pred             ceecCCCccccccchhHHHHHHh-hCCCCC--------eecCcCcccccChHHHHHHHhhhC
Q psy3500          46 PYKCEYCAYSCTQSSALKIHERK-HTGDKP--------YICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        46 ~~~c~~c~~~~~~~~~l~~h~~~-~~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      .+.|..|++.|.....|..|++. |.++++        |.|..|++.|.....|..|+++|+
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~   86 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT   86 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHH
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcC
Confidence            35799999999999999999998 998887        999999999999999999999883

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.1e-13  Score=59.19  Aligned_cols=42  Identities=36%  Similarity=0.606  Sum_probs=30.4

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            344566777777777777777777777777777777777775

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.3e-13  Score=57.87  Aligned_cols=38  Identities=29%  Similarity=0.522  Sum_probs=22.9

Q ss_pred             HhcCCCceecCCCccccccchhHHHHHHhhCCCCCeec
Q psy3500          40 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC   77 (98)
Q Consensus        40 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C   77 (98)
                      +|.++++|.|..|++.|.....|..|++.|++++||.|
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            4 GSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             SSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            45555566666666666666666666666666666554

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.4e-13  Score=58.87  Aligned_cols=42  Identities=40%  Similarity=0.689  Sum_probs=27.3

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      |+++|.++++|.|.+|++.|.....|..|++.|++++||.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            344566666666666666666666666666666666666664

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.5e-13  Score=58.78  Aligned_cols=42  Identities=40%  Similarity=0.675  Sum_probs=27.8

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            344566666677777777777776677776666666666664

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=2e-13  Score=58.38  Aligned_cols=41  Identities=46%  Similarity=0.757  Sum_probs=25.5

Q ss_pred             HhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          40 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        40 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      +|.++++|.|.+|++.|.....|..|++.|++++||.|..|
T Consensus         6 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            6 SGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            45555666666666666666666666666666666666554

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1.2e-13  Score=59.14  Aligned_cols=42  Identities=45%  Similarity=0.612  Sum_probs=27.9

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            344566666677777777777777777776667666666665

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.6e-13  Score=58.70  Aligned_cols=43  Identities=44%  Similarity=0.617  Sum_probs=32.2

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCc
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ   79 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~   79 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            4456677777888888888888888888877787777777753

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.3e-13  Score=58.96  Aligned_cols=42  Identities=43%  Similarity=0.675  Sum_probs=27.0

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            344556666666666666666666666666666666666664

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.8e-13  Score=58.57  Aligned_cols=42  Identities=36%  Similarity=0.602  Sum_probs=29.8

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            344566677777777777777777777777777777777765

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.6e-13  Score=58.69  Aligned_cols=42  Identities=38%  Similarity=0.654  Sum_probs=28.9

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            344566667777777777777777777777777777777665

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=1.9e-13  Score=57.92  Aligned_cols=41  Identities=32%  Similarity=0.471  Sum_probs=30.4

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeec
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC   77 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C   77 (98)
                      |+++|.+++||.|..|++.|.....|..|++.|++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            44566777777777777777777777777777777777766

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.6e-13  Score=58.75  Aligned_cols=42  Identities=43%  Similarity=0.679  Sum_probs=30.8

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            445566777777777777777777777777777777777775

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.6e-12  Score=55.51  Aligned_cols=43  Identities=23%  Similarity=0.273  Sum_probs=39.7

Q ss_pred             ccCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        10 ~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      +..++++++|.|.+|++.|.....|..|+++|.+++||.|++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            4 GSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4467889999999999999999999999999999999999876

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=1.5e-12  Score=55.11  Aligned_cols=42  Identities=19%  Similarity=0.230  Sum_probs=38.9

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|..|++.|.....|..|+++|.++++|.|.+|
T Consensus         3 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            357889999999999999999999999999999999999876

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.4e-13  Score=58.84  Aligned_cols=42  Identities=40%  Similarity=0.649  Sum_probs=28.8

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            344566667777777777777777777777777777777665

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.5e-13  Score=58.82  Aligned_cols=42  Identities=43%  Similarity=0.640  Sum_probs=28.5

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            344566666777777777777777777777777777777665

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.9e-13  Score=57.89  Aligned_cols=41  Identities=37%  Similarity=0.640  Sum_probs=27.7

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeec
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC   77 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C   77 (98)
                      |+++|.++++|.|..|++.|.....|..|+++|++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            34456666677777777777777777777777777766665

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.4e-13  Score=58.85  Aligned_cols=42  Identities=33%  Similarity=0.588  Sum_probs=27.7

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            344566666667777777777666677776666666666664

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1e-13  Score=59.31  Aligned_cols=39  Identities=26%  Similarity=0.272  Sum_probs=19.1

Q ss_pred             CCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          13 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        13 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      ++++++|.|.+|++.|.....|..|+++|.+++||.|++
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytt_A            7 GEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSS   45 (46)
T ss_dssp             CSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCC
T ss_pred             CCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            344444555555555555555555544444444444443

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.7e-13  Score=58.66  Aligned_cols=42  Identities=33%  Similarity=0.449  Sum_probs=28.0

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            344566666677777777777777777777667766666664

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.4e-13  Score=58.89  Aligned_cols=41  Identities=39%  Similarity=0.621  Sum_probs=27.2

Q ss_pred             HHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          38 MRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        38 ~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      +++|.++++|.|.+|++.|.....|..|++.|++++||.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            4 GSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             SSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            34566666667777777777666677776666666666665

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.35  E-value=2.3e-12  Score=55.02  Aligned_cols=42  Identities=29%  Similarity=0.367  Sum_probs=38.9

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|.+|++.|.....|..|+++|.+++||.|+.|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            5 SSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            357789999999999999999999999999999999999876

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.7e-13  Score=58.61  Aligned_cols=42  Identities=40%  Similarity=0.661  Sum_probs=28.7

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            344566666777777777777777777777777777777665

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.9e-12  Score=55.25  Aligned_cols=42  Identities=29%  Similarity=0.319  Sum_probs=39.1

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|..|++.|.....|..|+++|.+++||.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            5 SSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             ccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            457889999999999999999999999999999999999876

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.9e-13  Score=58.45  Aligned_cols=42  Identities=40%  Similarity=0.678  Sum_probs=27.2

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            344556666666666666666666666666666666666664

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.9e-12  Score=55.24  Aligned_cols=42  Identities=26%  Similarity=0.327  Sum_probs=39.0

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|..|++.|.....|..|+++|.+++||.|+.|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            5 SSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            457889999999999999999999999999999999999876

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.1e-13  Score=58.37  Aligned_cols=40  Identities=43%  Similarity=0.692  Sum_probs=22.5

Q ss_pred             HHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          39 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        39 ~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      ++|.++++|.|..|++.|.....|..|++.|++++||.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            5 SSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            3455555555555555555555555555555555555554

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.4e-13  Score=58.92  Aligned_cols=41  Identities=46%  Similarity=0.639  Sum_probs=26.4

Q ss_pred             HHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          38 MRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        38 ~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      +++|.++++|.|..|++.|.....|..|++.|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            4 GSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            34556666666666666666666666666666666666664

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.9e-12  Score=55.25  Aligned_cols=42  Identities=29%  Similarity=0.344  Sum_probs=39.1

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|..|++.|.....|..|+++|.+++||.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            5 SSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            457889999999999999999999999999999999999876

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.5e-12  Score=54.92  Aligned_cols=43  Identities=28%  Similarity=0.235  Sum_probs=39.6

Q ss_pred             ccCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        10 ~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ...++++++|.|.+|++.|.....|..|+++|.++++|.|.+|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            4 GSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            3457889999999999999999999999999999999999876

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.2e-13  Score=58.22  Aligned_cols=42  Identities=40%  Similarity=0.659  Sum_probs=30.3

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            344566777777777777777777777777777777777765

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.9e-12  Score=55.28  Aligned_cols=43  Identities=23%  Similarity=0.262  Sum_probs=39.6

Q ss_pred             ccCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        10 ~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ...++++++|.|..|++.|.....|..|+++|.+++||.|.+|
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            4 GSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            3457889999999999999999999999999999999999876

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.4e-13  Score=58.30  Aligned_cols=41  Identities=27%  Similarity=0.504  Sum_probs=28.7

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeec
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC   77 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C   77 (98)
                      |+++|.++++|.|.+|++.|.....|..|++.|+++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            34456667777777777777777777777777777777766

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=3e-12  Score=54.60  Aligned_cols=42  Identities=21%  Similarity=0.277  Sum_probs=38.9

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|..|++.|.....|..|+++|.++++|.|.+|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            5 SSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            357788999999999999999999999999999999999876

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.7e-12  Score=55.40  Aligned_cols=43  Identities=26%  Similarity=0.276  Sum_probs=39.6

Q ss_pred             ccCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        10 ~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      +..+.++++|.|.+|++.|.....|..|+++|.++++|.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            4 GSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4467889999999999999999999999999999999999876

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.6e-13  Score=58.12  Aligned_cols=41  Identities=37%  Similarity=0.545  Sum_probs=27.1

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeec
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC   77 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C   77 (98)
                      |+++|.++++|.|.+|++.|.....|..|++.|++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            34456666666777777777766667777666666666665

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.6e-12  Score=54.84  Aligned_cols=42  Identities=21%  Similarity=0.239  Sum_probs=38.9

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|.+|++.|.....|..|+++|.+++||.|++|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            5 SSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            357788999999999999999999999999999999999876

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.4e-12  Score=54.93  Aligned_cols=42  Identities=24%  Similarity=0.314  Sum_probs=39.0

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|.+|++.|.....|..|+++|.+++||.|+.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            5 SSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             cccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            457788999999999999999999999999999999999876

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.2e-12  Score=55.04  Aligned_cols=42  Identities=26%  Similarity=0.306  Sum_probs=39.0

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|.+|++.|.....|..|+++|.+++||.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            5 SSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             cccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            357789999999999999999999999999999999999876

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2e-12  Score=55.20  Aligned_cols=42  Identities=19%  Similarity=0.244  Sum_probs=39.0

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|.+|++.|.....|..|+++|.++++|.|+.|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            5 SSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            357889999999999999999999999999999999999876

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.34  E-value=2.8e-13  Score=56.78  Aligned_cols=38  Identities=34%  Similarity=0.605  Sum_probs=22.7

Q ss_pred             HhcCCCceecCCCccccccchhHHHHHHhhCCCCCeec
Q psy3500          40 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC   77 (98)
Q Consensus        40 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C   77 (98)
                      +|.++++|.|..|++.|.....|..|++.|++++||.|
T Consensus         5 ~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             cCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            45555566666666666666666666666666666554

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2.4e-12  Score=54.94  Aligned_cols=42  Identities=29%  Similarity=0.381  Sum_probs=39.0

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|..|++.|.....|..|+++|.+++||.|++|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            5 SSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             ccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            457889999999999999999999999999999999999876

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.33  E-value=2.2e-12  Score=55.05  Aligned_cols=43  Identities=23%  Similarity=0.264  Sum_probs=39.6

Q ss_pred             ccCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        10 ~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      +..++++++|.|.+|++.|.....|..|+++|.+++||.|.+|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            4 GSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3467889999999999999999999999999999999999876

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2.8e-13  Score=57.96  Aligned_cols=41  Identities=37%  Similarity=0.696  Sum_probs=29.8

Q ss_pred             HHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          38 MRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        38 ~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      +++|.++++|.|.+|++.|.....|..|++.|++++||.|.
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            4 GSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            34566777777777777777777777777777777777765

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=2.5e-13  Score=57.52  Aligned_cols=42  Identities=17%  Similarity=0.266  Sum_probs=30.8

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            345567777777777777777777777777777777777663

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2.2e-12  Score=55.05  Aligned_cols=42  Identities=29%  Similarity=0.356  Sum_probs=39.0

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..+.++++|.|..|++.|.....|..|+++|.+++||.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            5 SSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            457888999999999999999999999999999999999876

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2e-12  Score=55.19  Aligned_cols=43  Identities=28%  Similarity=0.295  Sum_probs=39.5

Q ss_pred             ccCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        10 ~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ...+.++++|.|.+|++.|.....|..|+++|.+++||.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            4 GSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             SSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            3457889999999999999999999999999999999999876

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=2.4e-12  Score=54.91  Aligned_cols=42  Identities=24%  Similarity=0.328  Sum_probs=39.1

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|.+|++.|.....|..|+++|.+++||.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            5 SSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            457889999999999999999999999999999999999876

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2e-13  Score=58.40  Aligned_cols=42  Identities=40%  Similarity=0.611  Sum_probs=27.3

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            334556666666666666666666666666666666666664

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2.1e-12  Score=55.09  Aligned_cols=42  Identities=24%  Similarity=0.331  Sum_probs=39.0

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|.+|++.|.....|..|+++|.+++||.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            5 SSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            357789999999999999999999999999999999999876

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.33  E-value=1.3e-12  Score=56.32  Aligned_cols=44  Identities=23%  Similarity=0.320  Sum_probs=40.4

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCcc
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAY   54 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~   54 (98)
                      ..+..+++|.|.+|++.|.....|..|+++|.+++||.|.+|++
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             SCCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            34667889999999999999999999999999999999999985

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.8e-12  Score=55.35  Aligned_cols=42  Identities=26%  Similarity=0.337  Sum_probs=38.9

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|..|++.|.....|..|+++|.+++||.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            5 SSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             cCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            357789999999999999999999999999999999999876

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2.6e-12  Score=54.82  Aligned_cols=42  Identities=26%  Similarity=0.333  Sum_probs=38.9

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|..|++.|.....|..|+++|.+++||.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            5 SSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            357788999999999999999999999999999999999876

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.5e-13  Score=57.61  Aligned_cols=41  Identities=37%  Similarity=0.682  Sum_probs=29.2

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeec
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC   77 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C   77 (98)
                      |+++|.++++|.|+.|++.|.....|..|++.|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            34456677777777777777777777777777777777765

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.32  E-value=2.3e-12  Score=54.99  Aligned_cols=42  Identities=26%  Similarity=0.385  Sum_probs=38.9

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|..|++.|.....|..|+++|.+++||.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            5 SSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             cCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            357789999999999999999999999999999999999876

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=3.3e-12  Score=54.50  Aligned_cols=42  Identities=17%  Similarity=0.127  Sum_probs=39.0

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|.+|++.|.....|..|+++|.+++||.|..|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            5 SSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            457888999999999999999999999999999999999876

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.1e-12  Score=55.12  Aligned_cols=43  Identities=28%  Similarity=0.305  Sum_probs=39.6

Q ss_pred             ccCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        10 ~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ...++++++|.|.+|++.|.....|..|+++|.+++||.|++|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            4 GSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            3457889999999999999999999999999999999999876

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=3.1e-13  Score=57.82  Aligned_cols=42  Identities=31%  Similarity=0.332  Sum_probs=31.2

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCC-CCCeecC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG-DKPYICQ   78 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~-~~~~~C~   78 (98)
                      |+++|.++++|.|..|++.|.....|..|++.|++ ++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            34456777777787788777777777777777777 7777775

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.32  E-value=2.3e-12  Score=55.01  Aligned_cols=42  Identities=26%  Similarity=0.243  Sum_probs=39.1

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..+.++++|.|.+|++.|.....|..|+++|.+++||.|.+|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            5 SSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            457889999999999999999999999999999999999876

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.9e-13  Score=57.34  Aligned_cols=38  Identities=42%  Similarity=0.675  Sum_probs=22.4

Q ss_pred             HhcCCCceecCCCccccccchhHHHHHHhhCCCCCeec
Q psy3500          40 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC   77 (98)
Q Consensus        40 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C   77 (98)
                      +|.+++||.|..|++.|.....|..|++.|++++||.|
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            5 SSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             ccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            45555566666666666666666666666666555554

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2e-12  Score=55.18  Aligned_cols=42  Identities=29%  Similarity=0.358  Sum_probs=39.0

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|..|++.|.....|..|+++|.+++||.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            5 SSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            357789999999999999999999999999999999999876

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=3.3e-12  Score=54.48  Aligned_cols=42  Identities=24%  Similarity=0.318  Sum_probs=38.8

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|..|++.|.....|..|+++|.+++||.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            5 SSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             cCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            357889999999999999999999999999999999999875

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.32  E-value=2.1e-12  Score=55.09  Aligned_cols=42  Identities=24%  Similarity=0.328  Sum_probs=38.9

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|..|++.|.....|..|+++|.+++||.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            5 SSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            357789999999999999999999999999999999999876

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2e-12  Score=55.18  Aligned_cols=42  Identities=26%  Similarity=0.330  Sum_probs=38.9

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|.+|++.|.....|..|+++|.+++||.|++|
T Consensus         5 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            5 SSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             SCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            357788999999999999999999999999999999999876

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=2e-13  Score=57.27  Aligned_cols=39  Identities=41%  Similarity=0.657  Sum_probs=24.8

Q ss_pred             HHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeec
Q psy3500          39 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC   77 (98)
Q Consensus        39 ~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C   77 (98)
                      ++|.++++|.|.+|++.|.....|..|++.|++++||.|
T Consensus         4 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            4 GSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             cccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            345566666666666666666666666666666666654

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.4e-12  Score=54.92  Aligned_cols=42  Identities=24%  Similarity=0.270  Sum_probs=38.9

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|..|++.|.....|..|+++|.+++||.|++|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            5 SSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             cccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            357889999999999999999999999999999999999876

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.1e-12  Score=55.12  Aligned_cols=42  Identities=26%  Similarity=0.315  Sum_probs=39.0

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|..|++.|.....|..|+++|.+++||.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            5 SSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             cCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            357789999999999999999999999999999999999876

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.2e-12  Score=55.10  Aligned_cols=42  Identities=24%  Similarity=0.323  Sum_probs=39.0

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..+.++++|.|..|++.|.....|..|+++|.+++||.|+.|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            5 SSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            457889999999999999999999999999999999999876

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.3e-12  Score=54.96  Aligned_cols=42  Identities=29%  Similarity=0.397  Sum_probs=39.0

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|.+|++.|.....|..|+++|.+++||.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            5 SSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             cCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            457889999999999999999999999999999999999876

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=2.6e-12  Score=54.80  Aligned_cols=43  Identities=28%  Similarity=0.317  Sum_probs=39.5

Q ss_pred             ccCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        10 ~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ...+.++++|.|.+|++.|.....|..|+++|.+++||.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            4 GSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3457889999999999999999999999999999999999876

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.1e-13  Score=58.29  Aligned_cols=42  Identities=31%  Similarity=0.471  Sum_probs=30.1

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      |+++|.++++|.|.+|++.|.....|..|++.|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            344566777777777777777777777777777777777765

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.9e-12  Score=54.62  Aligned_cols=42  Identities=31%  Similarity=0.394  Sum_probs=39.0

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|.+|++.|.....|..|+++|.++++|.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            5 SSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            457788999999999999999999999999999999999876

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.8e-13  Score=57.88  Aligned_cols=42  Identities=38%  Similarity=0.611  Sum_probs=30.3

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      |+++|.++++|.|+.|++.|.....|..|++.|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            344566777777777777777777777777777777777765

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=3.9e-13  Score=56.96  Aligned_cols=38  Identities=21%  Similarity=0.320  Sum_probs=19.3

Q ss_pred             HhcCCCceecCCCccccccchhHHHHHHhhCCCCCeec
Q psy3500          40 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC   77 (98)
Q Consensus        40 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C   77 (98)
                      +|.++++|.|.+|++.|.....|..|++.|++++||.|
T Consensus         6 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A            6 SGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             SCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            34444455555555555555555555555555555544

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=2.3e-12  Score=55.00  Aligned_cols=42  Identities=26%  Similarity=0.373  Sum_probs=39.0

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|.+|++.|.....|..|+++|.+++||.|++|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            5 SSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            457788999999999999999999999999999999999876

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3e-12  Score=54.63  Aligned_cols=43  Identities=28%  Similarity=0.318  Sum_probs=39.7

Q ss_pred             ccCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        10 ~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ...++++++|.|..|++.|.....|..|+++|.+++||.|.+|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            3467889999999999999999999999999999999999876

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.1e-12  Score=55.12  Aligned_cols=42  Identities=36%  Similarity=0.483  Sum_probs=39.4

Q ss_pred             HHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          39 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        39 ~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      ++|.++++|.|.+|++.|.....|..|++.|++++||.|..|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            468889999999999999999999999999999999999876

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.8e-12  Score=54.67  Aligned_cols=42  Identities=17%  Similarity=0.149  Sum_probs=38.8

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..+.++++|.|..|++.|.....|..|+++|.++++|.|+.|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            5 SSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             ccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            357788999999999999999999999999999999999876

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.1e-12  Score=55.11  Aligned_cols=43  Identities=23%  Similarity=0.258  Sum_probs=39.6

Q ss_pred             ccCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        10 ~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      +..++++++|.|..|++.|.....|..|+++|.+++||.|++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            4 GSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            3457889999999999999999999999999999999999876

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.1e-12  Score=55.13  Aligned_cols=42  Identities=26%  Similarity=0.351  Sum_probs=39.0

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|.+|++.|.....|..|+++|.+++||.|+.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            5 SSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            357789999999999999999999999999999999999876

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.30  E-value=2e-12  Score=55.16  Aligned_cols=42  Identities=26%  Similarity=0.321  Sum_probs=38.9

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|..|++.|.....|..|+++|.+++||.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            5 SSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             cCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            357788999999999999999999999999999999999876

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.8e-13  Score=57.40  Aligned_cols=41  Identities=24%  Similarity=0.327  Sum_probs=30.9

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeec
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC   77 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C   77 (98)
                      |+++|.++++|.|.+|++.|.....|..|+++|++++||.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            34566777778888888888888778888777777777776

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.6e-13  Score=58.06  Aligned_cols=40  Identities=30%  Similarity=0.484  Sum_probs=22.2

Q ss_pred             HHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          39 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        39 ~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            5 SSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             SCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             cCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3455555555555555555555555555555555555554

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.30  E-value=7e-13  Score=58.59  Aligned_cols=46  Identities=15%  Similarity=0.296  Sum_probs=41.4

Q ss_pred             ccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHHHhhhC
Q psy3500          53 AYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        53 ~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      ++.|.....|..|++.|+++++|.|..|++.|.....|..|+++|+
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   48 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhc
Confidence            3567777788889999999999999999999999999999999884

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.30  E-value=2.8e-12  Score=54.69  Aligned_cols=42  Identities=29%  Similarity=0.352  Sum_probs=39.1

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|..|++.|.....|..|+++|.+++||.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            5 SSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            457889999999999999999999999999999999999876

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=3.4e-12  Score=54.43  Aligned_cols=42  Identities=24%  Similarity=0.210  Sum_probs=38.8

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|..|++.|.....|..|+++|.+++||.|+.|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            5 SSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            357788999999999999999999999999999999999876

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=9.7e-13  Score=55.72  Aligned_cols=41  Identities=34%  Similarity=0.549  Sum_probs=28.2

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeec
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC   77 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C   77 (98)
                      |+++|.++++|.|.+|++.|.....|..|++.|++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            34456666777777777777777777777777777776654

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.5e-12  Score=54.23  Aligned_cols=42  Identities=29%  Similarity=0.419  Sum_probs=38.9

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHH-HhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMR-KHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~-~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|.+|++.|.....|..|++ +|.+++||.|..|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            5 SSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            45788999999999999999999999999 9999999999876

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=8.6e-12  Score=53.17  Aligned_cols=42  Identities=26%  Similarity=0.354  Sum_probs=38.6

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|..|++.|.....|..|+++|.+++||.|+++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            5 SSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            457889999999999999999999999999999999999864

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2.8e-12  Score=54.72  Aligned_cols=42  Identities=26%  Similarity=0.375  Sum_probs=38.9

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|.+|++.|.....|..|+++|.+++||.|++|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            5 SSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             TCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             cCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            357789999999999999999999999999999999999876

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=4.5e-16  Score=72.83  Aligned_cols=59  Identities=20%  Similarity=0.397  Sum_probs=51.6

Q ss_pred             HHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHHHhhhC
Q psy3500          33 DMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        33 ~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      .|..|+++|.++++|.|.+|++.|.....|..       +++|.|..|++.|.....|..|+++|+
T Consensus         5 ~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~   63 (73)
T 2ctu_A            5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNES   63 (73)
T ss_dssp             SCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCC
T ss_pred             hHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhc
Confidence            35667778999999999999999999887654       789999999999999999999988874

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=5.9e-12  Score=53.68  Aligned_cols=42  Identities=26%  Similarity=0.320  Sum_probs=38.5

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..+.++++|.|..|++.|.....|..|+++|.+++||.|+++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            5 SSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            457789999999999999999999999999999999999864

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=4e-12  Score=52.91  Aligned_cols=38  Identities=37%  Similarity=0.700  Sum_probs=25.3

Q ss_pred             HhcCCCceecCCCccccccchhHHHHHHhhCCCCCeec
Q psy3500          40 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC   77 (98)
Q Consensus        40 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C   77 (98)
                      +|.++++|.|++|++.|.....|..|++.|++++||.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            35566666676777766666666667666666666655

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2e-12  Score=55.15  Aligned_cols=42  Identities=26%  Similarity=0.322  Sum_probs=39.0

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|.+|++.|.....|..|+++|.+++||.|++|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            5 SSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            457889999999999999999999999999999999999876

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=4.4e-12  Score=53.38  Aligned_cols=37  Identities=16%  Similarity=0.290  Sum_probs=18.4

Q ss_pred             CCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceec
Q psy3500          13 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKC   49 (98)
Q Consensus        13 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c   49 (98)
                      ++++++|.|..|++.|.....|..|+++|.+++||.|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (43)
T 2yrm_A            5 SSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPS   41 (43)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSS
T ss_pred             cCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccC
Confidence            3444455555555555555555555555555444444

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=2e-12  Score=55.24  Aligned_cols=38  Identities=29%  Similarity=0.391  Sum_probs=19.4

Q ss_pred             CCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecC
Q psy3500          13 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE   50 (98)
Q Consensus        13 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~   50 (98)
                      +.++++|.|..|++.|.....|..|+++|.+++||.|.
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            7 GHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            44445555555555555555555555555555555443

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=4.3e-12  Score=53.90  Aligned_cols=39  Identities=36%  Similarity=0.633  Sum_probs=22.8

Q ss_pred             HhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecC
Q psy3500          40 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        40 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      +|.++++|.|..|++.|.....|..|++.|+++++|.|+
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            6 SGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            345555566666666666666666666666666666554

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=1.6e-11  Score=51.65  Aligned_cols=40  Identities=20%  Similarity=0.372  Sum_probs=37.2

Q ss_pred             HhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCc
Q psy3500          40 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ   79 (98)
Q Consensus        40 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~   79 (98)
                      +|.++++|.|..|++.|.....|..|++.|++++||.|..
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            5788899999999999999999999999999999999863

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=6.6e-12  Score=53.94  Aligned_cols=41  Identities=37%  Similarity=0.642  Sum_probs=26.4

Q ss_pred             HhcCCCceecC--CCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          40 KHTGEKPYKCE--YCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        40 ~h~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      +|.++++|.|.  .|++.|.....|..|++.|++++||.|..|
T Consensus         6 ~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            6 SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             SSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45566666665  566666666666666666666666666654

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=1.7e-11  Score=52.20  Aligned_cols=41  Identities=29%  Similarity=0.375  Sum_probs=37.8

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      ..+.++++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            5 SSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             cccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            45788999999999999999999999999999999999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=2.3e-11  Score=51.80  Aligned_cols=41  Identities=32%  Similarity=0.457  Sum_probs=37.9

Q ss_pred             HHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCc
Q psy3500          39 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ   79 (98)
Q Consensus        39 ~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~   79 (98)
                      ++|.++++|.|..|++.|.....|..|++.|++++||.|..
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            5 SSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            46788999999999999999999999999999999999863

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.23  E-value=1.8e-11  Score=52.18  Aligned_cols=41  Identities=29%  Similarity=0.414  Sum_probs=37.7

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      ..+.++++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            5 SSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            45778999999999999999999999999999999999974

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.6e-11  Score=50.57  Aligned_cols=39  Identities=15%  Similarity=0.217  Sum_probs=36.2

Q ss_pred             CCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecC
Q psy3500          12 RPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE   50 (98)
Q Consensus        12 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~   50 (98)
                      .++++++|.|..|++.|.....|..|+++|.++++|.|.
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            4 GSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             SSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            577889999999999999999999999999999999874

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.5e-11  Score=51.69  Aligned_cols=41  Identities=29%  Similarity=0.369  Sum_probs=37.8

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      ..++++++|.|.+|++.|.....|..|+++|.+++||.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            5 SSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            45788999999999999999999999999999999999964

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=2.1e-13  Score=64.25  Aligned_cols=55  Identities=20%  Similarity=0.298  Sum_probs=29.1

Q ss_pred             CCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCC
Q psy3500          15 ISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGD   72 (98)
Q Consensus        15 ~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   72 (98)
                      +++++.|..|+..|. ...|..|+ .+.+++++.|+.|++.+. ...|..|+.++.++
T Consensus        14 ~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A           14 PLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTB
T ss_pred             CCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCC
Confidence            345555555555552 45555555 455555555555555544 24455555555443

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.6e-11  Score=51.63  Aligned_cols=41  Identities=27%  Similarity=0.404  Sum_probs=37.7

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      ..++++++|.|.+|++.|.....|..|+++|.+++||.|++
T Consensus         5 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            5 SSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            45778999999999999999999999999999999999974

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=3.8e-11  Score=50.63  Aligned_cols=41  Identities=20%  Similarity=0.139  Sum_probs=37.2

Q ss_pred             ccCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecC
Q psy3500          10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE   50 (98)
Q Consensus        10 ~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~   50 (98)
                      ...+.++++|.|.+|++.|.....|..|+++|.+++||.|.
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            4 GSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             SCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            34578889999999999999999999999999999999884

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.21  E-value=2.3e-11  Score=50.80  Aligned_cols=39  Identities=21%  Similarity=0.335  Sum_probs=36.3

Q ss_pred             CCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecC
Q psy3500          12 RPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE   50 (98)
Q Consensus        12 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~   50 (98)
                      .++++++|.|.+|++.|.....|..|+++|.++++|.|+
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             SSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            577899999999999999999999999999999999884

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.21  E-value=3.4e-11  Score=50.22  Aligned_cols=40  Identities=15%  Similarity=0.192  Sum_probs=36.4

Q ss_pred             ccCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceec
Q psy3500          10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKC   49 (98)
Q Consensus        10 ~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c   49 (98)
                      ...++++++|.|.+|++.|.....|..|+++|.+++||.|
T Consensus         3 ~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            3 SGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            3457889999999999999999999999999999999876

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.9e-11  Score=51.43  Aligned_cols=41  Identities=24%  Similarity=0.339  Sum_probs=37.6

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      ..+.++++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            5 SSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            35778899999999999999999999999999999999964

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.3e-11  Score=51.73  Aligned_cols=41  Identities=29%  Similarity=0.451  Sum_probs=37.7

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      ..+.++++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            5 SSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             cCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            45778899999999999999999999999999999999974

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.5e-11  Score=52.16  Aligned_cols=41  Identities=24%  Similarity=0.296  Sum_probs=37.6

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      ..+.++++|.|..|++.|.....|..|+++|.++++|.|++
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            45788999999999999999999999999999999999864

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=2.2e-11  Score=51.86  Aligned_cols=41  Identities=27%  Similarity=0.352  Sum_probs=37.6

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      ..++++++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            5 SSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             cCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            35778899999999999999999999999999999999974

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=2e-11  Score=52.00  Aligned_cols=41  Identities=29%  Similarity=0.369  Sum_probs=37.7

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      ..+.++++|.|..|++.|.....|..|+++|.+++||.|+.
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            5 SSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             cCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            45788999999999999999999999999999999999964

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.4e-11  Score=51.27  Aligned_cols=42  Identities=24%  Similarity=0.317  Sum_probs=38.0

Q ss_pred             ccCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        10 ~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      +..++++++|.|.+|++.|.....|..|+++|.++++|.|+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            4 GSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            345788999999999999999999999999999999999863

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.9e-11  Score=52.10  Aligned_cols=42  Identities=24%  Similarity=0.331  Sum_probs=38.3

Q ss_pred             ccCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        10 ~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      +..+.++++|.|.+|++.|.....|..|+++|.+++||.|++
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            4 GSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             SSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            456788999999999999999999999999999999999974

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=2.8e-11  Score=51.45  Aligned_cols=41  Identities=27%  Similarity=0.401  Sum_probs=37.6

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      ..+.++++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            5 SSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             cCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            35778899999999999999999999999999999999974

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.4e-11  Score=50.71  Aligned_cols=40  Identities=20%  Similarity=0.365  Sum_probs=36.5

Q ss_pred             ccCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceec
Q psy3500          10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKC   49 (98)
Q Consensus        10 ~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c   49 (98)
                      ...++++++|.|..|++.|.....|..|+++|.+++||.|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            3 SGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            3457889999999999999999999999999999999876

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.8e-11  Score=51.46  Aligned_cols=41  Identities=27%  Similarity=0.369  Sum_probs=37.6

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      ..++++++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            5 SSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            35778899999999999999999999999999999999864

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.6e-11  Score=51.60  Aligned_cols=41  Identities=22%  Similarity=0.318  Sum_probs=37.5

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      ..+.++++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            5 SSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            45778899999999999999999999999999999999964

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.6e-11  Score=51.59  Aligned_cols=41  Identities=29%  Similarity=0.427  Sum_probs=37.6

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      ..++++++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            5 SSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             cccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            35778999999999999999999999999999999999964

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.8e-11  Score=51.55  Aligned_cols=41  Identities=24%  Similarity=0.368  Sum_probs=37.7

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      ..++++++|.|..|++.|.....|..|+++|.++++|.|+.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            5 SSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             ccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            45788999999999999999999999999999999999864

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=3.2e-11  Score=51.32  Aligned_cols=41  Identities=27%  Similarity=0.403  Sum_probs=37.6

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      ..+.++++|.|..|++.|.....|..|+++|.++++|.|+.
T Consensus         5 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            5 SSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             cccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            45788999999999999999999999999999999999864

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=2.3e-11  Score=51.77  Aligned_cols=41  Identities=27%  Similarity=0.362  Sum_probs=37.5

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      ..+.++++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            5 SSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             cCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            35778899999999999999999999999999999999864

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=3.1e-11  Score=51.41  Aligned_cols=41  Identities=32%  Similarity=0.385  Sum_probs=37.5

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      ..++++++|.|..|++.|.....|..|+++|.+++||.|+.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            5 SSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             cccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            35778999999999999999999999999999999999964

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.1e-11  Score=50.44  Aligned_cols=40  Identities=25%  Similarity=0.342  Sum_probs=36.6

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE   50 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~   50 (98)
                      ..+.++++|.|..|++.|.....|..|+++|.+++||.|+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            5 SSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             SCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             cCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            3577889999999999999999999999999999999884

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=2e-11  Score=50.99  Aligned_cols=40  Identities=25%  Similarity=0.397  Sum_probs=36.3

Q ss_pred             ccCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceec
Q psy3500          10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKC   49 (98)
Q Consensus        10 ~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c   49 (98)
                      ...++++++|.|.+|++.|.....|..|+++|.+++||.|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            3 SGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            4567889999999999999999999999999999998876

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=2.1e-11  Score=50.69  Aligned_cols=39  Identities=26%  Similarity=0.354  Sum_probs=35.7

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceec
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKC   49 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c   49 (98)
                      ..++++++|.|.+|++.|.....|..|+++|.+++||.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            357789999999999999999999999999999999876

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=3.6e-11  Score=51.16  Aligned_cols=40  Identities=20%  Similarity=0.257  Sum_probs=37.2

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE   50 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~   50 (98)
                      ..+.++++|.|.+|++.|.....|..|+++|.++++|.|+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            5 SSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             SCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             cCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4578899999999999999999999999999999999986

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.17  E-value=1.7e-11  Score=49.75  Aligned_cols=34  Identities=32%  Similarity=0.542  Sum_probs=26.3

Q ss_pred             HHHhhCCCCCeecCcCcccccChHHHHHHHhhhC
Q psy3500          65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        65 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      |++.|++++||.|..|++.|.....|..|+++|+
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhc
Confidence            4556777888888888888888888888887763

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=3.7e-11  Score=51.15  Aligned_cols=41  Identities=27%  Similarity=0.395  Sum_probs=37.4

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      ..++++++|.|..|++.|.....|..|+++|.+++||.|.+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            5 SSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             cCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            35778899999999999999999999999999999999864

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=3e-11  Score=51.40  Aligned_cols=41  Identities=29%  Similarity=0.454  Sum_probs=37.5

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      ..++++++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            5 SSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            35778899999999999999999999999999999999964

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.17  E-value=9.8e-12  Score=56.40  Aligned_cols=49  Identities=10%  Similarity=0.265  Sum_probs=42.5

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhH
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSAL   62 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l   62 (98)
                      ..+.++++|.|..|++.|.....|.   .+|.+++||.|..|++.|....++
T Consensus         7 ~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            7 RDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             SSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTC
T ss_pred             HHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCccc
Confidence            3578899999999999999887776   689999999999999999887643

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=3.7e-11  Score=51.12  Aligned_cols=41  Identities=27%  Similarity=0.353  Sum_probs=37.5

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      ..+.++++|.|..|++.|.....|..|+++|.+++||.|+.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            5 SSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             cccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            35778899999999999999999999999999999999864

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=5e-11  Score=50.72  Aligned_cols=40  Identities=23%  Similarity=0.312  Sum_probs=36.9

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE   50 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~   50 (98)
                      ..++++++|.|..|++.|.....|..|+++|.++++|.|+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            5 SSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             cccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            3577889999999999999999999999999999999986

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=4.1e-11  Score=50.43  Aligned_cols=40  Identities=25%  Similarity=0.276  Sum_probs=36.6

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE   50 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~   50 (98)
                      ..+.++++|.|.+|++.|.....|..|+++|.+++||.|+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            5 SSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             cCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            3577889999999999999999999999999999999884

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=3.8e-11  Score=51.05  Aligned_cols=41  Identities=29%  Similarity=0.402  Sum_probs=37.5

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      ..+.++++|.|..|++.|.....|..|+++|.+++||.|+.
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            5 SSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             cCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            35778899999999999999999999999999999999864

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=4.4e-11  Score=50.40  Aligned_cols=40  Identities=18%  Similarity=0.227  Sum_probs=36.6

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE   50 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~   50 (98)
                      ..+.++++|.|.+|++.|.....|..|+++|.++++|.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            5 SSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             cccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            3578899999999999999999999999999999999874

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.9e-11  Score=51.06  Aligned_cols=42  Identities=26%  Similarity=0.335  Sum_probs=38.0

Q ss_pred             ccCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        10 ~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      +..++++++|.|.+|++.|.....|..|+++|.+++||.|+.
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            4 GSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            345788999999999999999999999999999999999863

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.7e-11  Score=51.53  Aligned_cols=42  Identities=24%  Similarity=0.441  Sum_probs=38.7

Q ss_pred             cCCCCCCceecC--CCCCcCCCHHHHHHHHHHhcCCCceecCCC
Q psy3500          11 SRPNISYKYTCY--ACDYHTLMSEDMKKHMRKHTGEKPYKCEYC   52 (98)
Q Consensus        11 ~~~~~~~~~~c~--~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c   52 (98)
                      ..++++++|.|.  .|++.|.....|..|+++|.+++||.|..|
T Consensus         5 ~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            5 SSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            457889999998  899999999999999999999999999876

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.2e-11  Score=50.83  Aligned_cols=40  Identities=18%  Similarity=0.319  Sum_probs=36.7

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE   50 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~   50 (98)
                      ..++++++|.|.+|++.|.....|..|+++|.++++|.|+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            5 SSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             cccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            4578899999999999999999999999999999999884

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=4.9e-11  Score=50.26  Aligned_cols=40  Identities=15%  Similarity=0.337  Sum_probs=36.5

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE   50 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~   50 (98)
                      ..+.++++|.|..|++.|.....|..|+++|.+++||.|+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            5 SSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             SCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             cccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            4577889999999999999999999999999999998874

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=3.3e-11  Score=50.26  Aligned_cols=39  Identities=23%  Similarity=0.359  Sum_probs=35.8

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceec
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKC   49 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c   49 (98)
                      ..++++++|.|..|++.|.....|..|+++|.+++||.|
T Consensus         4 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            4 GSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             cccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            357789999999999999999999999999999999876

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=7.4e-11  Score=48.39  Aligned_cols=30  Identities=20%  Similarity=0.403  Sum_probs=21.4

Q ss_pred             hCCCCCeecCc--CcccccChHHHHHHHhhhC
Q psy3500          69 HTGDKPYICQQ--CRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        69 ~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~   98 (98)
                      +++++||.|..  |++.|.....|..|+++|+
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Ht   35 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHT   35 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            45677777765  7777777777777777764

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.11  E-value=6.9e-11  Score=48.54  Aligned_cols=34  Identities=24%  Similarity=0.516  Sum_probs=17.5

Q ss_pred             CCCceecCCCccccccchhHHHHHHhhCCCCCee
Q psy3500          43 GEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYI   76 (98)
Q Consensus        43 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~   76 (98)
                      ++++|.|..|++.|.....|..|++.|++++||.
T Consensus         3 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   36 (39)
T 1njq_A            3 PPRSYTCSFCKREFRSAQALGGHMNVHRRDRARL   36 (39)
T ss_dssp             CSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTT
T ss_pred             CCCceECCCCCcccCCHHHHHHHHHHcCCCccce
Confidence            4445555555555555555555555555555443

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=5.7e-11  Score=50.55  Aligned_cols=40  Identities=23%  Similarity=0.271  Sum_probs=36.9

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcC-CCceecC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTG-EKPYKCE   50 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~-~~~~~c~   50 (98)
                      ..+.++++|.|..|++.|.....|..|+++|.+ ++||.|+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            5 SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             cccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            457788999999999999999999999999999 9999986

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=5.6e-11  Score=50.53  Aligned_cols=40  Identities=23%  Similarity=0.324  Sum_probs=36.8

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE   50 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~   50 (98)
                      ..++++++|.|.+|++.|.....|..|+++|.++++|.|+
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            5 SSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3577899999999999999999999999999999999985

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=6.8e-11  Score=50.23  Aligned_cols=41  Identities=24%  Similarity=0.348  Sum_probs=37.3

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY   51 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~   51 (98)
                      ..+.++++|.|..|++.|.....|..|+++|.+++||.|+.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            5 SSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             cCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            35778899999999999999999999999999999999863

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=4.5e-11  Score=50.37  Aligned_cols=40  Identities=20%  Similarity=0.240  Sum_probs=36.6

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecC
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE   50 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~   50 (98)
                      ..+.++++|.|.+|++.|.....|..|+++|.+++||.|.
T Consensus         5 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            5 SSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             cCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3577889999999999999999999999999999999874

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=1.7e-10  Score=48.56  Aligned_cols=39  Identities=21%  Similarity=0.270  Sum_probs=35.8

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceec
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKC   49 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c   49 (98)
                      ..++++++|.|.+|++.|.....|..|+++|.+++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            5 SSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             cccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            457889999999999999999999999999999998876

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.08  E-value=1.1e-10  Score=47.95  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=33.2

Q ss_pred             CCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceec
Q psy3500          13 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKC   49 (98)
Q Consensus        13 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c   49 (98)
                      ++++++|.|.+|++.|.....|..|+++|.+++||.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            4578899999999999999999999999999988765

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.08  E-value=2.2e-10  Score=52.62  Aligned_cols=38  Identities=16%  Similarity=0.235  Sum_probs=22.1

Q ss_pred             CCCCCceecCC--CCCcCCCHHHHHHHH-HHhcCCCceecC
Q psy3500          13 PNISYKYTCYA--CDYHTLMSEDMKKHM-RKHTGEKPYKCE   50 (98)
Q Consensus        13 ~~~~~~~~c~~--C~~~~~~~~~l~~h~-~~h~~~~~~~c~   50 (98)
                      .++++||.|..  |++.|.....|..|+ ++|++++|+.|.
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccc
Confidence            45556666643  666666666666665 356666665553

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.06  E-value=1.7e-10  Score=53.00  Aligned_cols=39  Identities=26%  Similarity=0.462  Sum_probs=35.1

Q ss_pred             hcCCCceecCC--CccccccchhHHHHH-HhhCCCCCeecCc
Q psy3500          41 HTGEKPYKCEY--CAYSCTQSSALKIHE-RKHTGDKPYICQQ   79 (98)
Q Consensus        41 h~~~~~~~c~~--c~~~~~~~~~l~~h~-~~~~~~~~~~C~~   79 (98)
                      .++++||.|..  |++.|...+.|..|+ ++|++++|+.|..
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            57889999975  999999999999997 6899999999865

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=1.1e-10  Score=47.36  Aligned_cols=30  Identities=23%  Similarity=0.510  Sum_probs=21.1

Q ss_pred             hhCCCCCeecCcCcccccChHHHHHH-Hhhh
Q psy3500          68 KHTGDKPYICQQCRDTFSSLYLFRNH-LQSH   97 (98)
Q Consensus        68 ~~~~~~~~~C~~C~~~f~~~~~l~~H-~~~h   97 (98)
                      .|++++||.|..|++.|.....|..| +++|
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H   33 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRHVIQKH   33 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHHHHHHT
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHHc
Confidence            45667777777777777777777777 6665

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.04  E-value=2.7e-10  Score=45.49  Aligned_cols=33  Identities=24%  Similarity=0.531  Sum_probs=16.4

Q ss_pred             hcCCCceecCCCccccccchhHHHHHHhhCCCC
Q psy3500          41 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK   73 (98)
Q Consensus        41 h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   73 (98)
                      |.++++|.|.+|++.|.....|..|++.|++++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            344445555555555555555555555554443

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.03  E-value=1.4e-11  Score=59.69  Aligned_cols=55  Identities=16%  Similarity=0.295  Sum_probs=42.0

Q ss_pred             CCCCCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCC
Q psy3500          13 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG   71 (98)
Q Consensus        13 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   71 (98)
                      +.++++|.|.+|++.|.....|..|+++|.+++||.|..+.    ....+..|.+.+.+
T Consensus        20 H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           20 RLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             cCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhccccc
Confidence            66778899999999998888899998888888888887654    34444556666655

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=7.9e-11  Score=47.72  Aligned_cols=27  Identities=19%  Similarity=0.458  Sum_probs=10.7

Q ss_pred             CCceecCCCCCcCCCHHHHHHHHHHhc
Q psy3500          16 SYKYTCYACDYHTLMSEDMKKHMRKHT   42 (98)
Q Consensus        16 ~~~~~c~~C~~~~~~~~~l~~h~~~h~   42 (98)
                      +++|.|..|++.|.....|..|+++|.
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   33 (37)
T 2elo_A            7 GRSYSCPVCEKSFSEDRLIKSHIKTNH   33 (37)
T ss_dssp             CCCCEETTTTEECSSHHHHHHHHHHHC
T ss_pred             CCCcCCCCCCCccCCHHHHHHHHHHHc
Confidence            333444444444444444444433333

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.00  E-value=4.1e-10  Score=44.89  Aligned_cols=22  Identities=27%  Similarity=0.561  Sum_probs=8.1

Q ss_pred             ceecCCCCCcCCCHHHHHHHHH
Q psy3500          18 KYTCYACDYHTLMSEDMKKHMR   39 (98)
Q Consensus        18 ~~~c~~C~~~~~~~~~l~~h~~   39 (98)
                      +|.|..|++.|.....|..|++
T Consensus         7 ~~~C~~C~k~f~~~~~L~~H~~   28 (35)
T 2elx_A            7 GYVCALCLKKFVSSIRLRSHIR   28 (35)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CeECCCCcchhCCHHHHHHHHH
Confidence            3333333333333333333333

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.99  E-value=4.4e-10  Score=44.86  Aligned_cols=31  Identities=16%  Similarity=0.332  Sum_probs=14.7

Q ss_pred             CCCCceecCCCCCcCCCHHHHHHHHHHhcCC
Q psy3500          14 NISYKYTCYACDYHTLMSEDMKKHMRKHTGE   44 (98)
Q Consensus        14 ~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~   44 (98)
                      +++++|.|.+|++.|.....|..|+++|.++
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   33 (35)
T 1srk_A            3 SGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCcCeeCCCCCcccCCHHHHHHHHHHcCCC
Confidence            3444444555555554444444444444443

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.98  E-value=1e-09  Score=43.71  Aligned_cols=34  Identities=26%  Similarity=0.483  Sum_probs=31.3

Q ss_pred             hcCCCceecCCCccccccchhHHHHHHhhCCCCC
Q psy3500          41 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP   74 (98)
Q Consensus        41 h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   74 (98)
                      |.++++|.|..|++.|.....|..|++.|++++|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            6788999999999999999999999999998864

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=5.8e-10  Score=44.74  Aligned_cols=29  Identities=31%  Similarity=0.542  Sum_probs=17.5

Q ss_pred             hCCCCCeecCcCcccccChHHHHHHHhhh
Q psy3500          69 HTGDKPYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        69 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      |++++||.|..|++.|.....|..|+++|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKH   32 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHc
Confidence            45555666666666666666666666555

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=8.6e-10  Score=44.51  Aligned_cols=36  Identities=17%  Similarity=0.414  Sum_probs=32.8

Q ss_pred             HHhcCCCceecCCCccccccchhHHHHHHhhCCCCC
Q psy3500          39 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP   74 (98)
Q Consensus        39 ~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   74 (98)
                      ++|.++++|.|..|++.|.....|..|++.|++++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            357889999999999999999999999999998864

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=5.3e-10  Score=44.93  Aligned_cols=29  Identities=21%  Similarity=0.379  Sum_probs=18.9

Q ss_pred             hCCCCCeecCcCcccccChHHHHHHHhhh
Q psy3500          69 HTGDKPYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        69 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      |++++||.|..|++.|.....|..|+++|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVH   32 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTT
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHh
Confidence            45566666666666666666666666665

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.97  E-value=5.6e-10  Score=47.94  Aligned_cols=33  Identities=24%  Similarity=0.605  Sum_probs=23.9

Q ss_pred             hcCCCceecCCCccccccchhHHHHHH-hhCCCC
Q psy3500          41 HTGEKPYKCEYCAYSCTQSSALKIHER-KHTGDK   73 (98)
Q Consensus        41 h~~~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~~   73 (98)
                      |.++++|.|.+|++.|.....|..|++ .|+++.
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            567777888888888887777888877 777654

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=7.2e-10  Score=44.51  Aligned_cols=29  Identities=24%  Similarity=0.537  Sum_probs=17.6

Q ss_pred             hCCCCCeecCcCcccccChHHHHHHHhhh
Q psy3500          69 HTGDKPYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        69 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      |++++||.|..|++.|.....|..|+++|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRH   32 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHS
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHh
Confidence            45556666666666666666666666555

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.96  E-value=6.8e-10  Score=43.88  Aligned_cols=30  Identities=23%  Similarity=0.418  Sum_probs=15.1

Q ss_pred             ceecCCCCCcCCCHHHHHHHHHHhcCCCce
Q psy3500          18 KYTCYACDYHTLMSEDMKKHMRKHTGEKPY   47 (98)
Q Consensus        18 ~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~   47 (98)
                      +|.|.+|++.|.....|..|+.+|.+++++
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            345555555555555555555555544443

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.94  E-value=9.6e-10  Score=41.28  Aligned_cols=27  Identities=30%  Similarity=0.770  Sum_probs=23.1

Q ss_pred             CCCeecCcCcccccChHHHHHHHhhhC
Q psy3500          72 DKPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        72 ~~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      ++||.|..|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            468899999999999999999988875

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.94  E-value=2.4e-10  Score=46.23  Aligned_cols=32  Identities=34%  Similarity=0.683  Sum_probs=16.5

Q ss_pred             HhcCCCceecCCCccccccchhHHHHHHhhCC
Q psy3500          40 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTG   71 (98)
Q Consensus        40 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   71 (98)
                      +|.+++||.|+.|++.|.....|..|++.|++
T Consensus         5 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            5 GSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             TTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             cCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            44455555555555555555555555554443

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.94  E-value=1.3e-09  Score=43.00  Aligned_cols=32  Identities=19%  Similarity=0.164  Sum_probs=29.8

Q ss_pred             CceecCCCccccccchhHHHHHHhhCCCCCee
Q psy3500          45 KPYKCEYCAYSCTQSSALKIHERKHTGDKPYI   76 (98)
Q Consensus        45 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~   76 (98)
                      +||.|.+|++.|.....|..|+++|+++++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            47899999999999999999999999999875

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=1e-09  Score=43.99  Aligned_cols=29  Identities=24%  Similarity=0.469  Sum_probs=17.3

Q ss_pred             hCCCCCeecCcCcccccChHHHHHHHhhh
Q psy3500          69 HTGDKPYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        69 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      |+++++|.|..|++.|.....|..|+++|
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLH   32 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHH
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHh
Confidence            44555666666666666666666666555

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.92  E-value=8.6e-10  Score=41.50  Aligned_cols=27  Identities=33%  Similarity=0.719  Sum_probs=23.1

Q ss_pred             CCCeecCcCcccccChHHHHHHHhhhC
Q psy3500          72 DKPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        72 ~~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      ++||.|..|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            468899999999999999999988875

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=8e-10  Score=44.64  Aligned_cols=29  Identities=17%  Similarity=0.340  Sum_probs=16.2

Q ss_pred             hCCCCCeecCcCcccccCh-HHHHHHHhhh
Q psy3500          69 HTGDKPYICQQCRDTFSSL-YLFRNHLQSH   97 (98)
Q Consensus        69 ~~~~~~~~C~~C~~~f~~~-~~l~~H~~~h   97 (98)
                      |++++||.|..|++.|... ..|..|+++|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H   33 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWAH   33 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHHH
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHhc
Confidence            4455555555555555555 5555555554

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=1.6e-09  Score=43.44  Aligned_cols=29  Identities=24%  Similarity=0.533  Sum_probs=16.7

Q ss_pred             hCCCCCeecCcCcccccChHHHHHHHhhh
Q psy3500          69 HTGDKPYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        69 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      +.++++|.|..|++.|.....|..|+++|
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIH   32 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHh
Confidence            34455566666666666666666665555

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=1e-09  Score=51.50  Aligned_cols=62  Identities=19%  Similarity=0.344  Sum_probs=53.3

Q ss_pred             HHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHHHhhhC
Q psy3500          34 MKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        34 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      |..|+..+.+++++.|..|++.|. ...|..|. .+.+++|+.|+.|++.|. ...|..|+++|.
T Consensus         5 L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~   66 (75)
T 2d9k_A            5 SSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCG   66 (75)
T ss_dssp             CSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBT
T ss_pred             HHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHcc
Confidence            455666778899999999999995 78899999 899999999999999877 488999998763

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=3.2e-09  Score=43.43  Aligned_cols=31  Identities=26%  Similarity=0.493  Sum_probs=19.1

Q ss_pred             CCCCCceecCC--CCCcCCCHHHHHHHHHHhcC
Q psy3500          13 PNISYKYTCYA--CDYHTLMSEDMKKHMRKHTG   43 (98)
Q Consensus        13 ~~~~~~~~c~~--C~~~~~~~~~l~~h~~~h~~   43 (98)
                      +++++||.|.+  |++.|.....|..|+++|++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            44556666654  66666666666666666654

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.89  E-value=2e-10  Score=55.58  Aligned_cols=44  Identities=14%  Similarity=0.256  Sum_probs=40.0

Q ss_pred             HHhcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcc
Q psy3500          39 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD   82 (98)
Q Consensus        39 ~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~   82 (98)
                      .+|.++++|.|.+|++.|.....|..|+++|++++||.|..|.+
T Consensus        18 ~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~   61 (88)
T 1x6f_A           18 GPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER   61 (88)
T ss_dssp             CSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSC
T ss_pred             cccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhh
Confidence            45888999999999999999999999999999999999987654

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.87  E-value=1.5e-09  Score=44.06  Aligned_cols=31  Identities=16%  Similarity=0.274  Sum_probs=13.8

Q ss_pred             CCCceecC--CCCCcCCCHHHHHHHHHHhcCCC
Q psy3500          15 ISYKYTCY--ACDYHTLMSEDMKKHMRKHTGEK   45 (98)
Q Consensus        15 ~~~~~~c~--~C~~~~~~~~~l~~h~~~h~~~~   45 (98)
                      ++++|.|.  .|++.|.....|..|+++|.+++
T Consensus         3 ~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   35 (38)
T 1bhi_A            3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTL   35 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHHTTT
T ss_pred             CCcceECCCCCCCcccCCHHHHHHHHHHhCCCC
Confidence            33444444  24444444444444444444443

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=2.8e-09  Score=42.64  Aligned_cols=31  Identities=32%  Similarity=0.743  Sum_probs=16.8

Q ss_pred             CCCCCceecCCCCCcCCCHHHHHHHHHHhcC
Q psy3500          13 PNISYKYTCYACDYHTLMSEDMKKHMRKHTG   43 (98)
Q Consensus        13 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~   43 (98)
                      +.++++|.|..|++.|.....|..|+++|.+
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTG   34 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHccC
Confidence            4445555555555555555555555555544

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.84  E-value=3.5e-09  Score=42.91  Aligned_cols=35  Identities=26%  Similarity=0.563  Sum_probs=31.9

Q ss_pred             hcCCCceecC--CCccccccchhHHHHHHhhCCCCCe
Q psy3500          41 HTGEKPYKCE--YCAYSCTQSSALKIHERKHTGDKPY   75 (98)
Q Consensus        41 h~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~   75 (98)
                      |.++++|.|.  .|++.|...+.|..|++.|+++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4678899999  5999999999999999999999876

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.84  E-value=3.4e-09  Score=39.97  Aligned_cols=27  Identities=30%  Similarity=0.610  Sum_probs=22.4

Q ss_pred             CCCeecCcCcccccChHHHHHHHhhhC
Q psy3500          72 DKPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        72 ~~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      ++||.|..|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            467888888888888888888888774

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=3.4e-09  Score=42.46  Aligned_cols=31  Identities=26%  Similarity=0.610  Sum_probs=16.2

Q ss_pred             CCCCCceecCCCCCcCCCHHHHHHHHHHhcC
Q psy3500          13 PNISYKYTCYACDYHTLMSEDMKKHMRKHTG   43 (98)
Q Consensus        13 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~   43 (98)
                      +.++++|.|.+|++.|.....|..|+++|.+
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHST   34 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHSST
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHhcc
Confidence            3444555555555555555555555555443

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.83  E-value=2.7e-09  Score=48.84  Aligned_cols=39  Identities=18%  Similarity=0.226  Sum_probs=30.7

Q ss_pred             hcCCCceecCCCccccccchhHHHHHHhhCCCCCeecCcC
Q psy3500          41 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC   80 (98)
Q Consensus        41 h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C   80 (98)
                      +.+++||.|..|++.|.....|..|+++|+++. ..+..+
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~-~~~~~~   46 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTS-LQLGYI   46 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS-CCCCSC
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc-cccccc
Confidence            567788999999999999999999999998864 334333

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=8.3e-09  Score=41.19  Aligned_cols=32  Identities=19%  Similarity=0.233  Sum_probs=19.5

Q ss_pred             CCCCCceecCCCCCcCCCHHHHHHHHHHhcCC
Q psy3500          13 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGE   44 (98)
Q Consensus        13 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~   44 (98)
                      +.++++|.|.+|++.|.....|..|+++|.++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            44555666666666666666666666666543

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=3.2e-09  Score=42.53  Aligned_cols=30  Identities=23%  Similarity=0.392  Sum_probs=14.8

Q ss_pred             CCCCceecCCCCCcCCCHHHHHHHHHHhcC
Q psy3500          14 NISYKYTCYACDYHTLMSEDMKKHMRKHTG   43 (98)
Q Consensus        14 ~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~   43 (98)
                      +++++|.|.+|++.|.....|..|+++|.+
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elv_A            5 SSGLLYDCHICERKFKNELDRDRHMLVHGD   34 (36)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHHTTTST
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHHHhcC
Confidence            344455555555555555555555444443

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=3.5e-09  Score=42.67  Aligned_cols=31  Identities=29%  Similarity=0.632  Sum_probs=14.6

Q ss_pred             hcCCCceecCCCccccccc-hhHHHHHHhhCC
Q psy3500          41 HTGEKPYKCEYCAYSCTQS-SALKIHERKHTG   71 (98)
Q Consensus        41 h~~~~~~~c~~c~~~~~~~-~~l~~h~~~~~~   71 (98)
                      |.++++|.|+.|++.|... ..|..|++.|++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~   35 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEG   35 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHHHHT
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHhcCC
Confidence            3344444444444444444 444444444443

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=6.1e-09  Score=41.66  Aligned_cols=30  Identities=23%  Similarity=0.463  Sum_probs=16.3

Q ss_pred             CCCCceecCCCCCcCCCHHHHHHHHHHhcC
Q psy3500          14 NISYKYTCYACDYHTLMSEDMKKHMRKHTG   43 (98)
Q Consensus        14 ~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~   43 (98)
                      +++++|.|..|++.|.....|..|+++|.+
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2els_A            5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTN   34 (36)
T ss_dssp             SCCCCEECTTTCCEESSHHHHHHHHHHHCC
T ss_pred             CCCCCEECCCCCceeCCHHHHHHHHHHhCC
Confidence            344555555555555555555555555544

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.79  E-value=3.9e-09  Score=42.63  Aligned_cols=24  Identities=25%  Similarity=0.472  Sum_probs=12.1

Q ss_pred             CCCCeecCcCcccccChHHHHHHH
Q psy3500          71 GDKPYICQQCRDTFSSLYLFRNHL   94 (98)
Q Consensus        71 ~~~~~~C~~C~~~f~~~~~l~~H~   94 (98)
                      +++||.|..|++.|.+.+.|..|+
T Consensus         5 gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            5 KPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CccCeECCCCCCccCCHhHccCcC
Confidence            444555555555555555555544

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=1.8e-09  Score=43.65  Aligned_cols=30  Identities=27%  Similarity=0.659  Sum_probs=16.0

Q ss_pred             CCCCCceecCCCCCcCCCHHHHHHH-HHHhc
Q psy3500          13 PNISYKYTCYACDYHTLMSEDMKKH-MRKHT   42 (98)
Q Consensus        13 ~~~~~~~~c~~C~~~~~~~~~l~~h-~~~h~   42 (98)
                      ++++++|.|..|++.|.....|..| +..|.
T Consensus         4 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            4 GSSGHLYYCSQCHYSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             SSSSCEEECSSSSCEEECHHHHHHHHHHHTC
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHHHcc
Confidence            4445555555555555555555555 44444

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.77  E-value=5.1e-09  Score=44.84  Aligned_cols=33  Identities=18%  Similarity=0.333  Sum_probs=24.5

Q ss_pred             CCCCCceecCCCCCcCCCHHHHHHHHH-HhcCCC
Q psy3500          13 PNISYKYTCYACDYHTLMSEDMKKHMR-KHTGEK   45 (98)
Q Consensus        13 ~~~~~~~~c~~C~~~~~~~~~l~~h~~-~h~~~~   45 (98)
                      ++++++|.|.+|++.|.....|..|++ +|.++.
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            567778888888888888888888887 777654

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.75  E-value=6.1e-09  Score=42.03  Aligned_cols=29  Identities=28%  Similarity=0.527  Sum_probs=16.8

Q ss_pred             hCCCCCeecC--cCcccccChHHHHHHHhhh
Q psy3500          69 HTGDKPYICQ--QCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        69 ~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h   97 (98)
                      +++++||.|.  .|++.|.....|..|+++|
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H   33 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWH   33 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhc
Confidence            3455566665  3666666666666666554

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.75  E-value=4.4e-09  Score=42.47  Aligned_cols=25  Identities=12%  Similarity=0.344  Sum_probs=14.8

Q ss_pred             CCCCceecCCCCCcCCCHHHHHHHH
Q psy3500          14 NISYKYTCYACDYHTLMSEDMKKHM   38 (98)
Q Consensus        14 ~~~~~~~c~~C~~~~~~~~~l~~h~   38 (98)
                      .++++|.|.+|++.|...+.|..|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            3455666666666666666666555

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.75  E-value=1.1e-08  Score=38.98  Aligned_cols=27  Identities=37%  Similarity=0.668  Sum_probs=21.3

Q ss_pred             CCCeecCcCcccccChHHHHHHHhhhC
Q psy3500          72 DKPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        72 ~~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      ++||.|..|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~   27 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHD   27 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhc
Confidence            357888888888888888888887763

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.18  E-value=1.4e-09  Score=40.44  Aligned_cols=26  Identities=35%  Similarity=0.887  Sum_probs=21.3

Q ss_pred             CCeecCcCcccccChHHHHHHHhhhC
Q psy3500          73 KPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        73 ~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      +||.|..|++.|.....|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            46888888888888888888888774

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.71  E-value=7.4e-10  Score=47.30  Aligned_cols=29  Identities=38%  Similarity=0.769  Sum_probs=14.4

Q ss_pred             hCCCCCeecC--cCcccccChHHHHHHHhhh
Q psy3500          69 HTGDKPYICQ--QCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        69 ~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h   97 (98)
                      |++++||.|.  .|++.|.....|..|+++|
T Consensus        13 H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H   43 (47)
T 1ncs_A           13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTH   43 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHH
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHHc
Confidence            4445555553  3555555555555555444

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.70  E-value=2.7e-08  Score=40.02  Aligned_cols=32  Identities=28%  Similarity=0.502  Sum_probs=18.8

Q ss_pred             CCCCCceecC--CCCCcCCCHHHHHHHHHHhcCC
Q psy3500          13 PNISYKYTCY--ACDYHTLMSEDMKKHMRKHTGE   44 (98)
Q Consensus        13 ~~~~~~~~c~--~C~~~~~~~~~l~~h~~~h~~~   44 (98)
                      ++++++|.|.  .|++.|.....|..|+++|.++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            4455566665  3666666666666666655543

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.68  E-value=1.8e-08  Score=38.04  Aligned_cols=26  Identities=23%  Similarity=0.717  Sum_probs=20.6

Q ss_pred             CCeecCcCcccccChHHHHHHHhhhC
Q psy3500          73 KPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        73 ~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      +||.|..|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhc
Confidence            36788888888888888888887763

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.68  E-value=1.4e-08  Score=38.45  Aligned_cols=25  Identities=20%  Similarity=0.454  Sum_probs=19.3

Q ss_pred             CCeecCcCcccccChHHHHHHHhhh
Q psy3500          73 KPYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        73 ~~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      +||.|..|++.|.....|..|+++|
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H   25 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLH   25 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGG
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHh
Confidence            4677888888888888888887776

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.68  E-value=7.5e-10  Score=43.42  Aligned_cols=30  Identities=20%  Similarity=0.277  Sum_probs=20.3

Q ss_pred             ceecCCCccccccchhHHHHHHhhCCCCCe
Q psy3500          46 PYKCEYCAYSCTQSSALKIHERKHTGDKPY   75 (98)
Q Consensus        46 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~   75 (98)
                      ||.|..|++.|...+.|..|+++|++++||
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            566777777777766677776666666654

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.67  E-value=1.9e-08  Score=39.02  Aligned_cols=27  Identities=33%  Similarity=0.664  Sum_probs=21.1

Q ss_pred             CCCeecC--cCcccccChHHHHHHHhhhC
Q psy3500          72 DKPYICQ--QCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        72 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~   98 (98)
                      ++||.|.  .|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~   29 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHcc
Confidence            3578887  78888888888888888774

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.66  E-value=2e-08  Score=37.34  Aligned_cols=25  Identities=24%  Similarity=0.557  Sum_probs=19.8

Q ss_pred             CeecCcCcccccChHHHHHHHhhhC
Q psy3500          74 PYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        74 ~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      ||.|..|++.|.....|..|+++|+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcC
Confidence            5778888888888888888888774

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.66  E-value=3.1e-08  Score=37.60  Aligned_cols=27  Identities=19%  Similarity=0.357  Sum_probs=14.3

Q ss_pred             CceecCCCCCcCCCHHHHHHHHHHhcC
Q psy3500          17 YKYTCYACDYHTLMSEDMKKHMRKHTG   43 (98)
Q Consensus        17 ~~~~c~~C~~~~~~~~~l~~h~~~h~~   43 (98)
                      ++|.|..|++.|.....|..|+++|.+
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~   28 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDT   28 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhcc
Confidence            345555555555555555555555443

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.62  E-value=4.1e-08  Score=37.06  Aligned_cols=26  Identities=23%  Similarity=0.464  Sum_probs=13.7

Q ss_pred             ceecCCCccccccchhHHHHHHhhCC
Q psy3500          46 PYKCEYCAYSCTQSSALKIHERKHTG   71 (98)
Q Consensus        46 ~~~c~~c~~~~~~~~~l~~h~~~~~~   71 (98)
                      ||.|..|++.|.....|..|++.|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcC
Confidence            44555555555555555555555544

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.62  E-value=6.8e-08  Score=36.37  Aligned_cols=27  Identities=33%  Similarity=0.666  Sum_probs=16.0

Q ss_pred             ceecCCCCCcCCCHHHHHHHHHHhcCC
Q psy3500          18 KYTCYACDYHTLMSEDMKKHMRKHTGE   44 (98)
Q Consensus        18 ~~~c~~C~~~~~~~~~l~~h~~~h~~~   44 (98)
                      +|.|..|++.|.....|..|+++|.++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            455666666666666666666655543

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.62  E-value=3.1e-08  Score=38.13  Aligned_cols=26  Identities=23%  Similarity=0.701  Sum_probs=21.1

Q ss_pred             CCeecC--cCcccccChHHHHHHHhhhC
Q psy3500          73 KPYICQ--QCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        73 ~~~~C~--~C~~~f~~~~~l~~H~~~h~   98 (98)
                      +||.|.  .|++.|.....|..|+++|+
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~   28 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhc
Confidence            468887  78888888888888888774

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.60  E-value=7.5e-08  Score=44.01  Aligned_cols=33  Identities=12%  Similarity=0.132  Sum_probs=30.2

Q ss_pred             CCCCCceecCCCCCcCCCHHHHHHHHHHhcCCC
Q psy3500          13 PNISYKYTCYACDYHTLMSEDMKKHMRKHTGEK   45 (98)
Q Consensus        13 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~   45 (98)
                      +.++++|.|.+|++.|.....|..|+++|++..
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            567899999999999999999999999998863

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.60  E-value=8.7e-09  Score=43.87  Aligned_cols=36  Identities=19%  Similarity=0.427  Sum_probs=27.8

Q ss_pred             HHHhcCCCceecC--CCccccccchhHHHHHHhhCCCC
Q psy3500          38 MRKHTGEKPYKCE--YCAYSCTQSSALKIHERKHTGDK   73 (98)
Q Consensus        38 ~~~h~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~   73 (98)
                      ...|.+++||.|.  .|++.|...+.|..|++.|++++
T Consensus        10 ~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           10 YVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            3457788888885  68888888888888888887753

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.58  E-value=5.6e-08  Score=36.60  Aligned_cols=26  Identities=23%  Similarity=0.593  Sum_probs=21.8

Q ss_pred             CCeecC--cCcccccChHHHHHHHhhhC
Q psy3500          73 KPYICQ--QCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        73 ~~~~C~--~C~~~f~~~~~l~~H~~~h~   98 (98)
                      ++|.|.  .|++.|.....|..|+++|+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            468888  89999999989999988874

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.57  E-value=5.9e-08  Score=36.08  Aligned_cols=25  Identities=28%  Similarity=0.568  Sum_probs=14.6

Q ss_pred             CceecCCCCCcCCCHHHHHHHHHHh
Q psy3500          17 YKYTCYACDYHTLMSEDMKKHMRKH   41 (98)
Q Consensus        17 ~~~~c~~C~~~~~~~~~l~~h~~~h   41 (98)
                      ++|.|..|++.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            4556666666666666666665544

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.57  E-value=8.2e-08  Score=36.35  Aligned_cols=27  Identities=22%  Similarity=0.699  Sum_probs=14.2

Q ss_pred             ceecCCCCCcCCCHHHHHHHHHHhcCC
Q psy3500          18 KYTCYACDYHTLMSEDMKKHMRKHTGE   44 (98)
Q Consensus        18 ~~~c~~C~~~~~~~~~l~~h~~~h~~~   44 (98)
                      +|.|..|++.|.....|..|+++|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccC
Confidence            345555555555555555555555443

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.56  E-value=8.3e-08  Score=37.12  Aligned_cols=27  Identities=26%  Similarity=0.645  Sum_probs=13.8

Q ss_pred             ceecC--CCccccccchhHHHHHHhhCCC
Q psy3500          46 PYKCE--YCAYSCTQSSALKIHERKHTGD   72 (98)
Q Consensus        46 ~~~c~--~c~~~~~~~~~l~~h~~~~~~~   72 (98)
                      ||.|.  .|++.|.....|..|+++|+++
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            44554  4555555555555555555443

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.56  E-value=5e-08  Score=36.71  Aligned_cols=23  Identities=30%  Similarity=0.668  Sum_probs=8.8

Q ss_pred             eecCCCCCcCCCHHHHHHHHHHh
Q psy3500          19 YTCYACDYHTLMSEDMKKHMRKH   41 (98)
Q Consensus        19 ~~c~~C~~~~~~~~~l~~h~~~h   41 (98)
                      |.|..|++.|.....|..|+++|
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H   25 (29)
T 2m0f_A            3 LKCRECGKQFTTSGNLKRHLRIH   25 (29)
T ss_dssp             EECTTTSCEESCHHHHHHHHHHH
T ss_pred             ccCCCCCCccCChhHHHHHHHHh
Confidence            33333333333333333333333

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.56  E-value=8.3e-08  Score=36.07  Aligned_cols=29  Identities=45%  Similarity=0.731  Sum_probs=26.2

Q ss_pred             CceecCCCccccccchhHHHHHHhhCCCC
Q psy3500          45 KPYKCEYCAYSCTQSSALKIHERKHTGDK   73 (98)
Q Consensus        45 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   73 (98)
                      +||.|..|++.|.....|..|++.|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            47899999999999999999999998764

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.96  E-value=8.4e-09  Score=39.36  Aligned_cols=26  Identities=31%  Similarity=0.801  Sum_probs=19.6

Q ss_pred             CCeecCcCcccccChHHHHHHHhhhC
Q psy3500          73 KPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        73 ~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      +||.|..|++.|.....|..|+++|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            56778888888887777877777663

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.54  E-value=6.4e-08  Score=36.38  Aligned_cols=26  Identities=23%  Similarity=0.469  Sum_probs=13.8

Q ss_pred             ceecCCCCCcCCCHHHHHHHHHHhcC
Q psy3500          18 KYTCYACDYHTLMSEDMKKHMRKHTG   43 (98)
Q Consensus        18 ~~~c~~C~~~~~~~~~l~~h~~~h~~   43 (98)
                      +|.|..|++.|.....|..|+++|.+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            44555555555555555555555544

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.96  E-value=8.7e-09  Score=39.11  Aligned_cols=26  Identities=27%  Similarity=0.593  Sum_probs=19.8

Q ss_pred             CCeecCcCcccccChHHHHHHHhhhC
Q psy3500          73 KPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        73 ~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      +||.|..|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHT   26 (29)
Confidence            36778888888888888888877763

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.54  E-value=8.9e-08  Score=36.25  Aligned_cols=28  Identities=32%  Similarity=0.805  Sum_probs=16.8

Q ss_pred             ceecCCCccccccchhHHHHHHhhCCCC
Q psy3500          46 PYKCEYCAYSCTQSSALKIHERKHTGDK   73 (98)
Q Consensus        46 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~   73 (98)
                      +|.|..|++.|...+.|..|++.|++++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            4556666666666666666666655543

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.53  E-value=6.4e-08  Score=36.36  Aligned_cols=27  Identities=33%  Similarity=0.504  Sum_probs=14.4

Q ss_pred             ceecCCCccccccchhHHHHHHhhCCC
Q psy3500          46 PYKCEYCAYSCTQSSALKIHERKHTGD   72 (98)
Q Consensus        46 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   72 (98)
                      |+.|..|++.|.....|..|++.|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            445555555555555555555555443

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.52  E-value=1e-09  Score=43.02  Aligned_cols=31  Identities=23%  Similarity=0.466  Sum_probs=27.0

Q ss_pred             CceecCCCCCcCCCHHHHHHHHHHhcCCCce
Q psy3500          17 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPY   47 (98)
Q Consensus        17 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~   47 (98)
                      ++|.|.+|++.|.....|..|+++|.+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            4688999999999999999999999988775

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.52  E-value=8.2e-08  Score=36.88  Aligned_cols=26  Identities=31%  Similarity=0.709  Sum_probs=13.0

Q ss_pred             ceecC--CCCCcCCCHHHHHHHHHHhcC
Q psy3500          18 KYTCY--ACDYHTLMSEDMKKHMRKHTG   43 (98)
Q Consensus        18 ~~~c~--~C~~~~~~~~~l~~h~~~h~~   43 (98)
                      +|.|.  .|++.|.....|..|+++|.+
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~   29 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcC
Confidence            34454  455555555555555544443

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.50  E-value=4.8e-08  Score=36.44  Aligned_cols=24  Identities=29%  Similarity=0.461  Sum_probs=12.9

Q ss_pred             CceecCCCCCcCCCHHHHHHHHHH
Q psy3500          17 YKYTCYACDYHTLMSEDMKKHMRK   40 (98)
Q Consensus        17 ~~~~c~~C~~~~~~~~~l~~h~~~   40 (98)
                      ++|.|..|++.|.....|..|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHh
Confidence            345555555555555555555543

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.50  E-value=1e-07  Score=35.68  Aligned_cols=24  Identities=29%  Similarity=0.678  Sum_probs=12.0

Q ss_pred             ceecCCCCCcCCCHHHHHHHHHHh
Q psy3500          18 KYTCYACDYHTLMSEDMKKHMRKH   41 (98)
Q Consensus        18 ~~~c~~C~~~~~~~~~l~~h~~~h   41 (98)
                      +|.|..|++.|.....|..|+++|
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h   26 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYRVH   26 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHTTS
T ss_pred             CccCCCCCcccCCHHHHHHHHHhc
Confidence            445555555555555555554443

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.48  E-value=6.8e-08  Score=36.71  Aligned_cols=26  Identities=31%  Similarity=0.631  Sum_probs=19.1

Q ss_pred             CCeecCcCcccccChHHHHHH-HhhhC
Q psy3500          73 KPYICQQCRDTFSSLYLFRNH-LQSHG   98 (98)
Q Consensus        73 ~~~~C~~C~~~f~~~~~l~~H-~~~h~   98 (98)
                      +||.|..|++.|.....|..| +++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~   27 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHS   27 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHcc
Confidence            367788888888888888888 56663

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.48  E-value=9.9e-08  Score=35.33  Aligned_cols=24  Identities=25%  Similarity=0.607  Sum_probs=12.8

Q ss_pred             eecCCCCCcCCCHHHHHHHHHHhc
Q psy3500          19 YTCYACDYHTLMSEDMKKHMRKHT   42 (98)
Q Consensus        19 ~~c~~C~~~~~~~~~l~~h~~~h~   42 (98)
                      |.|..|++.|.....|..|+++|.
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             ccCCCCCCcCCCHHHHHHHHHHcC
Confidence            445555555555555555555443

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.81  E-value=2.6e-08  Score=37.71  Aligned_cols=25  Identities=24%  Similarity=0.497  Sum_probs=12.4

Q ss_pred             ceecCCCCCcCCCHHHHHHHHHHhc
Q psy3500          18 KYTCYACDYHTLMSEDMKKHMRKHT   42 (98)
Q Consensus        18 ~~~c~~C~~~~~~~~~l~~h~~~h~   42 (98)
                      +|.|..|++.|.....|..|+++|.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHT   26 (29)
Confidence            3445555555555555555544443

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.42  E-value=1.8e-07  Score=35.48  Aligned_cols=26  Identities=31%  Similarity=0.681  Sum_probs=13.0

Q ss_pred             ceecCCCccccccchhHHHH-HHhhCC
Q psy3500          46 PYKCEYCAYSCTQSSALKIH-ERKHTG   71 (98)
Q Consensus        46 ~~~c~~c~~~~~~~~~l~~h-~~~~~~   71 (98)
                      ||.|..|++.|.....|..| ++.|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccC
Confidence            34455555555555555555 344444

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.77  E-value=3.2e-08  Score=37.62  Aligned_cols=25  Identities=28%  Similarity=0.635  Sum_probs=12.1

Q ss_pred             ceecCCCCCcCCCHHHHHHHHHHhc
Q psy3500          18 KYTCYACDYHTLMSEDMKKHMRKHT   42 (98)
Q Consensus        18 ~~~c~~C~~~~~~~~~l~~h~~~h~   42 (98)
                      +|.|..|++.|.....|..|+++|.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            4445555555554444544444443

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.65  E-value=7.6e-08  Score=35.43  Aligned_cols=24  Identities=29%  Similarity=0.700  Sum_probs=13.2

Q ss_pred             ceecCCCCCcCCCHHHHHHHHHHh
Q psy3500          18 KYTCYACDYHTLMSEDMKKHMRKH   41 (98)
Q Consensus        18 ~~~c~~C~~~~~~~~~l~~h~~~h   41 (98)
                      +|.|..|++.|.....|..|+++|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            455555555555555555555443

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.17  E-value=1.5e-06  Score=32.38  Aligned_cols=24  Identities=21%  Similarity=0.483  Sum_probs=12.2

Q ss_pred             ceecC--CCCCcCCCHHHHHHHHHHh
Q psy3500          18 KYTCY--ACDYHTLMSEDMKKHMRKH   41 (98)
Q Consensus        18 ~~~c~--~C~~~~~~~~~l~~h~~~h   41 (98)
                      +|.|.  .|++.|.....|..|+++|
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H   27 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIH   27 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHh
Confidence            34455  5555555555555555444

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.08  E-value=1.7e-05  Score=35.84  Aligned_cols=24  Identities=21%  Similarity=0.419  Sum_probs=16.0

Q ss_pred             CeecC--cCcccccChHHHHHHHhhh
Q psy3500          74 PYICQ--QCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        74 ~~~C~--~C~~~f~~~~~l~~H~~~h   97 (98)
                      +|.|.  .|+..+.....|..|++..
T Consensus        38 ~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A           38 PLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCEeeCCCCcCCCCChHHHHhhcccc
Confidence            57775  5776666667777777654

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.04  E-value=3.5e-05  Score=34.83  Aligned_cols=51  Identities=16%  Similarity=0.388  Sum_probs=41.9

Q ss_pred             eecCCCCCcCCCHHHHHHHHH-HhcCCC------ceecC--CCccccccchhHHHHHHhh
Q psy3500          19 YTCYACDYHTLMSEDMKKHMR-KHTGEK------PYKCE--YCAYSCTQSSALKIHERKH   69 (98)
Q Consensus        19 ~~c~~C~~~~~~~~~l~~h~~-~h~~~~------~~~c~--~c~~~~~~~~~l~~h~~~~   69 (98)
                      ..+..|++.|.....|..|+. .|.+..      ++.|.  .|+..+.....|.+|++..
T Consensus         4 C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            4 CKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CCCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             EeeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            445679999999999999985 787655      78886  8999888888999998753

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.85  E-value=4.2e-06  Score=42.63  Aligned_cols=29  Identities=21%  Similarity=0.362  Sum_probs=24.3

Q ss_pred             hhCCCCCeecCcCcccccChHHHHHHHhh
Q psy3500          68 KHTGDKPYICQQCRDTFSSLYLFRNHLQS   96 (98)
Q Consensus        68 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~   96 (98)
                      .++|+++|.|..|++.|.....|..|+++
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            46788889998999999999888888764

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.16  E-value=0.00035  Score=29.28  Aligned_cols=22  Identities=27%  Similarity=0.597  Sum_probs=12.4

Q ss_pred             CeecCcCcccccChHHHHHHHh
Q psy3500          74 PYICQQCRDTFSSLYLFRNHLQ   95 (98)
Q Consensus        74 ~~~C~~C~~~f~~~~~l~~H~~   95 (98)
                      +|.|+.|+..|.....|..|++
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhhh
Confidence            3555555555555555555554

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.04  E-value=0.00014  Score=37.03  Aligned_cols=27  Identities=33%  Similarity=0.422  Sum_probs=20.0

Q ss_pred             hcCCCceecCCCccccccchhHHHHHH
Q psy3500          41 HTGEKPYKCEYCAYSCTQSSALKIHER   67 (98)
Q Consensus        41 h~~~~~~~c~~c~~~~~~~~~l~~h~~   67 (98)
                      ++++++|.|..|++.|.+...|..|.+
T Consensus        45 ~tGekpfyC~~C~K~F~~~~~L~~H~r   71 (124)
T 1zr9_A           45 LPGGGLHRCLACARYFIDSTNLKTHFR   71 (124)
T ss_dssp             SGGGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             CCCCcceEcccCcchhCCHHHHHHHHh
Confidence            556677777777777777777777764

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=96.90  E-value=0.0011  Score=32.68  Aligned_cols=26  Identities=19%  Similarity=0.553  Sum_probs=14.8

Q ss_pred             CCCCCCCCCccCCCCCCceecCCCCC
Q psy3500           1 MYHCKTCSTLSRPNISYKYTCYACDY   26 (98)
Q Consensus         1 ~~~c~~c~~~~~~~~~~~~~c~~C~~   26 (98)
                      ||+|..||..|.....++-.|+.|..
T Consensus        67 p~~C~~CG~~F~~~~~kPsrCP~CkS   92 (105)
T 2gmg_A           67 PAQCRKCGFVFKAEINIPSRCPKCKS   92 (105)
T ss_dssp             CCBBTTTCCBCCCCSSCCSSCSSSCC
T ss_pred             CcChhhCcCeecccCCCCCCCcCCCC
Confidence            45666666666444445556666653

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.72  E-value=0.0034  Score=32.14  Aligned_cols=75  Identities=21%  Similarity=0.315  Sum_probs=47.9

Q ss_pred             CceecCCCCCcCCCHHHHHHHHH--HhcCC-CceecC------CCccccccchhHHHHHHhhCCCCCeecCcCcccccCh
Q psy3500          17 YKYTCYACDYHTLMSEDMKKHMR--KHTGE-KPYKCE------YCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSL   87 (98)
Q Consensus        17 ~~~~c~~C~~~~~~~~~l~~h~~--~h~~~-~~~~c~------~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~   87 (98)
                      .++.|..|...|.+...+..|..  .|... +.+.+.      .-++.+....    +.....+.+.|.|..|+..|...
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~C~~~f~s~  106 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPVCNMTFSSP  106 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETTTTEECSSH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCCCCCEeCCH
Confidence            46789999999999999988883  34321 111110      0111221111    11234566789999999999999


Q ss_pred             HHHHHHHh
Q psy3500          88 YLFRNHLQ   95 (98)
Q Consensus        88 ~~l~~H~~   95 (98)
                      ..+..|..
T Consensus       107 ~~~~~H~~  114 (127)
T 1zu1_A          107 VVAESHYI  114 (127)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHC
Confidence            99999974

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.42  E-value=0.0039  Score=26.15  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=19.1

Q ss_pred             CceecCCCCCcCCCHHHHHHHHH
Q psy3500          17 YKYTCYACDYHTLMSEDMKKHMR   39 (98)
Q Consensus        17 ~~~~c~~C~~~~~~~~~l~~h~~   39 (98)
                      -.|.|+.|+..|.....|..||+
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            46788888888888888888886

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.34  E-value=0.01  Score=30.37  Aligned_cols=26  Identities=12%  Similarity=0.270  Sum_probs=20.8

Q ss_pred             cCCCceecCCCccccccchhHHHHHH
Q psy3500          42 TGEKPYKCEYCAYSCTQSSALKIHER   67 (98)
Q Consensus        42 ~~~~~~~c~~c~~~~~~~~~l~~h~~   67 (98)
                      .+...+.|.+|...|.+...+..|..
T Consensus        89 ~~~~~~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           89 GEDRSKCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             CCCTTTEETTTTEECSSHHHHHHHHT
T ss_pred             CCCCCeEcCCCCCEeCCHHHHHHHHC
Confidence            44556889999999999988888864

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.30  E-value=0.034  Score=29.63  Aligned_cols=51  Identities=20%  Similarity=0.274  Sum_probs=36.9

Q ss_pred             CceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHHHhhh
Q psy3500          45 KPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        45 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      .+..|+.|+..+ ....+..|....-..++..|+.|+..+.. ..+..|+.++
T Consensus       109 ~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~~  159 (170)
T 3hcs_A          109 ALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQNC  159 (170)
T ss_dssp             SEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHTTC
T ss_pred             eeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHHhC
Confidence            467788888776 44568888877777788889999876654 3467776543

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.10  E-value=0.032  Score=29.74  Aligned_cols=56  Identities=18%  Similarity=0.280  Sum_probs=39.8

Q ss_pred             ceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhhCCCCCe
Q psy3500          18 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY   75 (98)
Q Consensus        18 ~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~   75 (98)
                      +..|+.|+..+ ....|..|....=..+...|+.|+..+.. ..+..|...++|+.++
T Consensus       110 ~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          110 LMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQNCPLALEH  165 (170)
T ss_dssp             EEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHTTCCC----
T ss_pred             eeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHHhCcChhhh
Confidence            46788888776 45568888865556677899999987765 4589999988887653

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=95.05  E-value=0.025  Score=25.29  Aligned_cols=28  Identities=18%  Similarity=0.560  Sum_probs=16.1

Q ss_pred             CceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccc
Q psy3500          17 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYS   55 (98)
Q Consensus        17 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~   55 (98)
                      ..|.|..|+..+..+           ...+..|+.||..
T Consensus        20 v~Y~C~~Cg~~~~l~-----------~~~~iRC~~CG~R   47 (63)
T 3h0g_L           20 MIYLCADCGARNTIQ-----------AKEVIRCRECGHR   47 (63)
T ss_dssp             CCCBCSSSCCBCCCC-----------SSSCCCCSSSCCC
T ss_pred             eEEECCCCCCeeecC-----------CCCceECCCCCcE
Confidence            457777777666432           1234667777643

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=94.74  E-value=0.015  Score=26.61  Aligned_cols=28  Identities=25%  Similarity=0.649  Sum_probs=17.2

Q ss_pred             CCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCcc
Q psy3500          16 SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAY   54 (98)
Q Consensus        16 ~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~   54 (98)
                      ...|.|..|+..|...           ...+..|+.||.
T Consensus        26 ~v~Y~C~~CG~~~e~~-----------~~d~irCp~CG~   53 (70)
T 1twf_L           26 TLKYICAECSSKLSLS-----------RTDAVRCKDCGH   53 (70)
T ss_dssp             CCCEECSSSCCEECCC-----------TTSTTCCSSSCC
T ss_pred             eEEEECCCCCCcceeC-----------CCCCccCCCCCc
Confidence            3567888888776532           112346777776

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=94.55  E-value=0.048  Score=25.48  Aligned_cols=48  Identities=21%  Similarity=0.314  Sum_probs=33.0

Q ss_pred             CceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHH
Q psy3500          17 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHE   66 (98)
Q Consensus        17 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~   66 (98)
                      ..|.|..|+..+.. ..+..|...=.+...+.|..|+..|.... .+.|.
T Consensus         9 V~F~C~~Cgd~lKK-~kv~~H~~~Cr~~~~~SCIDC~~~F~~~~-y~~Ht   56 (79)
T 1wjv_A            9 VFFTCNACGESVKK-IQVEKHVSNCRNCECLSCIDCGKDFWGDD-YKSHV   56 (79)
T ss_dssp             CEEEESSSCCEEET-THHHHHHHHCTTCCEEEETTTTEEEEGGG-TTTCC
T ss_pred             eEEEcCCCCCeeec-ccchhHHhhCCCCCcEEecccCCeeCCCC-EeCEe
Confidence            46889999977654 45677765444445689999999988643 44453

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=94.13  E-value=0.0085  Score=28.05  Aligned_cols=13  Identities=23%  Similarity=0.664  Sum_probs=10.5

Q ss_pred             CCeecCcCccccc
Q psy3500          73 KPYICQQCRDTFS   85 (98)
Q Consensus        73 ~~~~C~~C~~~f~   85 (98)
                      -.|+|+.||.-|.
T Consensus        50 F~FkCP~CgEEFy   62 (95)
T 2k5c_A           50 FVFKCPVCGEEFY   62 (95)
T ss_dssp             SEEECTTTCCEEE
T ss_pred             HhhcCCCccHHHh
Confidence            4689999998774

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=93.90  E-value=0.087  Score=20.52  Aligned_cols=21  Identities=29%  Similarity=0.583  Sum_probs=14.1

Q ss_pred             CeecCcCcccccChHHHHHHH
Q psy3500          74 PYICQQCRDTFSSLYLFRNHL   94 (98)
Q Consensus        74 ~~~C~~C~~~f~~~~~l~~H~   94 (98)
                      .|.|+.|.+.|.....|..|-
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hy   25 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHY   25 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHH
T ss_pred             ccCCcHHHHHcCCHHHHHHHH
Confidence            366777777777777666664

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=92.29  E-value=0.046  Score=29.43  Aligned_cols=26  Identities=31%  Similarity=0.749  Sum_probs=18.9

Q ss_pred             CCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCcc
Q psy3500          16 SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAY   54 (98)
Q Consensus        16 ~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~   54 (98)
                      +..|.|+.||..+.             ++.|-.||+|+.
T Consensus       136 ~~~~~C~~CG~i~~-------------~~~p~~CP~Cg~  161 (170)
T 3pwf_A          136 KKVYICPICGYTAV-------------DEAPEYCPVCGA  161 (170)
T ss_dssp             SCEEECTTTCCEEE-------------SCCCSBCTTTCC
T ss_pred             CCeeEeCCCCCeeC-------------CCCCCCCCCCCC
Confidence            45688999987663             245668999984

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3

Probab=91.76  E-value=0.2  Score=23.96  Aligned_cols=24  Identities=29%  Similarity=0.973  Sum_probs=14.7

Q ss_pred             CCCCCCCCCccCCCCCCceecCCCCCc
Q psy3500           1 MYHCKTCSTLSRPNISYKYTCYACDYH   27 (98)
Q Consensus         1 ~~~c~~c~~~~~~~~~~~~~c~~C~~~   27 (98)
                      +|.|+.|++..   ....|.|..|+..
T Consensus        47 ~~~C~~C~~~~---~~~~Y~C~~C~f~   70 (89)
T 1v5n_A           47 VYTCDKCEEEG---TIWSYHCDECDFD   70 (89)
T ss_dssp             SCCCTTTSCCC---CSCEEECTTTCCC
T ss_pred             CeEeCCCCCcC---CCcEEEcCCCCCe
Confidence            46677777653   3456777777643

>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}

Probab=91.47  E-value=0.078  Score=26.73  Aligned_cols=27  Identities=22%  Similarity=0.443  Sum_probs=16.7

Q ss_pred             CceecCCCCCcCCCHHHHHHHHHHhcCCCce-ecCCCccc
Q psy3500          17 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPY-KCEYCAYS   55 (98)
Q Consensus        17 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~-~c~~c~~~   55 (98)
                      ..++|..|+..|..            ...+. .||.|+..
T Consensus        72 ~~~~C~~CG~~~e~------------~~~~~~~CP~Cgs~   99 (119)
T 2kdx_A           72 VELECKDCSHVFKP------------NALDYGVCEKCHSK   99 (119)
T ss_dssp             CEEECSSSSCEECS------------CCSTTCCCSSSSSC
T ss_pred             ceEEcCCCCCEEeC------------CCCCCCcCccccCC
Confidence            35777777777653            12355 67777754

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=91.14  E-value=0.14  Score=24.45  Aligned_cols=27  Identities=30%  Similarity=0.349  Sum_probs=17.1

Q ss_pred             ceecCCCccccccchhHHHHHHhhCCCCCe
Q psy3500          46 PYKCEYCAYSCTQSSALKIHERKHTGDKPY   75 (98)
Q Consensus        46 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~   75 (98)
                      ...|-+||+.|..   |..|+..+.|..|.
T Consensus        21 ~iiClecGK~fK~---LkRHL~~~hgltpe   47 (87)
T 2jsp_A           21 HIVCLECGGSFKS---LKRHLTTHHSMTPE   47 (87)
T ss_dssp             CEECTBTCCEESB---HHHHHHHTTCSCHH
T ss_pred             ceEecccchhhHH---HHHHHHHccCCCHH
Confidence            3567777776664   55677766666553

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=91.13  E-value=0.11  Score=28.66  Aligned_cols=24  Identities=21%  Similarity=0.418  Sum_probs=18.5

Q ss_pred             ceecCCCccccccchhHHHHHHhhCCCCCeecCcCcc
Q psy3500          46 PYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD   82 (98)
Q Consensus        46 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~   82 (98)
                      -+.|.+||..+..             ..|+.|+.|+.
T Consensus       171 ~~~C~~CG~i~~g-------------~~p~~CP~C~~  194 (202)
T 1yuz_A          171 FHLCPICGYIHKG-------------EDFEKCPICFR  194 (202)
T ss_dssp             EEECSSSCCEEES-------------SCCSBCTTTCC
T ss_pred             EEEECCCCCEEcC-------------cCCCCCCCCCC
Confidence            5889999987652             45799999975

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=91.11  E-value=0.12  Score=21.63  Aligned_cols=13  Identities=31%  Similarity=0.925  Sum_probs=8.0

Q ss_pred             ceecCCCcccccc
Q psy3500          46 PYKCEYCAYSCTQ   58 (98)
Q Consensus        46 ~~~c~~c~~~~~~   58 (98)
                      .+.|.+||..|..
T Consensus         4 ~y~C~vCGyvyd~   16 (46)
T 6rxn_A            4 KYVCNVCGYEYDP   16 (46)
T ss_dssp             CEEETTTCCEECG
T ss_pred             EEECCCCCeEEeC
Confidence            3567777766654

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=90.40  E-value=0.44  Score=18.72  Aligned_cols=20  Identities=20%  Similarity=0.305  Sum_probs=9.3

Q ss_pred             eecCCCCCcCCCHHHHHHHH
Q psy3500          19 YTCYACDYHTLMSEDMKKHM   38 (98)
Q Consensus        19 ~~c~~C~~~~~~~~~l~~h~   38 (98)
                      +.|..|+.+|.....+..|.
T Consensus         9 ~~C~~C~IsF~~l~ty~aHK   28 (36)
T 1fu9_A            9 KYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             SEETTTTEECSSHHHHHHHH
T ss_pred             CeeccccceehhhHHHhhhh
Confidence            34444554454444444443

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.25  E-value=0.74  Score=21.96  Aligned_cols=49  Identities=10%  Similarity=0.242  Sum_probs=28.6

Q ss_pred             CCCCCCCCccCCCCCCceecCCCCCcCCCHHHHHHHHHHh-cCCCceecCC--Cccc
Q psy3500           2 YHCKTCSTLSRPNISYKYTCYACDYHTLMSEDMKKHMRKH-TGEKPYKCEY--CAYS   55 (98)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h-~~~~~~~c~~--c~~~   55 (98)
                      |.|++|...|..    |..-+.||..|-.. .+..+.... .......|++  |...
T Consensus         8 ~~CPI~~~~~~d----PV~~~~cGh~f~r~-cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            8 FTCPITKEEMKK----PVKNKVCGHTYEED-AIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             CBCTTTCSBCSS----EEEESSSCCEEEHH-HHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             eECcCcCchhcC----CEEcCCCCCeecHH-HHHHHHHHccCcCCCCCCCcCcCccc
Confidence            678888877765    44444588877543 344444433 2234567888  6533

>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1

Probab=89.81  E-value=0.14  Score=27.84  Aligned_cols=38  Identities=29%  Similarity=0.663  Sum_probs=24.7

Q ss_pred             hhHHHHHHhh--CCCC-----CeecCcCcccccChHHHHHHHhhhC
Q psy3500          60 SALKIHERKH--TGDK-----PYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        60 ~~l~~h~~~~--~~~~-----~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      ..|..|++..  .|..     =|+|..||+ +..-.++..|++.|+
T Consensus       133 grlieHlK~~~~~GqDyvFWQFYKCe~CgK-YvDId~~~~Hlk~Hg  177 (226)
T 2czr_A          133 AALVNHIKNNALAGQDYIFWQFYKCEECGK-YVDIENLEAHLREHG  177 (226)
T ss_dssp             HHHHHHHHTTCCBTTTEEEEEEEECTTTCC-EEEGGGHHHHHHTTT
T ss_pred             HHHHHHHHhccccCcceEEEEEEehhhcCc-eecHHHHHHHHHHcC
Confidence            3466776643  2321     368999986 556667888888875

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=89.19  E-value=0.46  Score=17.59  Aligned_cols=21  Identities=14%  Similarity=0.510  Sum_probs=15.7

Q ss_pred             CeecCcCcccccChHHHHHHH
Q psy3500          74 PYICQQCRDTFSSLYLFRNHL   94 (98)
Q Consensus        74 ~~~C~~C~~~f~~~~~l~~H~   94 (98)
                      .+.|+.|.........+..|-
T Consensus         3 k~~CpvCk~q~Pd~kt~~~H~   23 (28)
T 2jvx_A            3 DFCCPKCQYQAPDMDTLQIHV   23 (28)
T ss_dssp             CEECTTSSCEESSHHHHHHHH
T ss_pred             cccCccccccCcChHHHHHHH
Confidence            377888888777777777764

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=88.85  E-value=0.56  Score=19.58  Aligned_cols=26  Identities=23%  Similarity=0.511  Sum_probs=14.5

Q ss_pred             CCCCCCCCccCCCCC---CceecCCCCCc
Q psy3500           2 YHCKTCSTLSRPNIS---YKYTCYACDYH   27 (98)
Q Consensus         2 ~~c~~c~~~~~~~~~---~~~~c~~C~~~   27 (98)
                      |.|=.||+.|..+.-   ..-+|+.||..
T Consensus         4 Y~C~rCg~~fs~~el~~lP~IrCpyCGyr   32 (48)
T 4ayb_P            4 YRCGKCWKTFTDEQLKVLPGVRCPYCGYK   32 (48)
T ss_dssp             -CCCCTTTTCCCCCSCCCSSSCCTTTCCS
T ss_pred             EEeeccCCCccHHHHhhCCCcccCccCcE
Confidence            667777777664332   12457777644

>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}

Probab=88.00  E-value=0.19  Score=26.70  Aligned_cols=28  Identities=18%  Similarity=0.470  Sum_probs=18.1

Q ss_pred             CCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccc
Q psy3500          16 SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYS   55 (98)
Q Consensus        16 ~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~   55 (98)
                      .+.|.|..|++.|...            ...-.|+.||..
T Consensus       130 ~~~y~C~~Cg~~~~~~------------~~~~~Cp~CG~~  157 (165)
T 2lcq_A          130 KWRYVCIGCGRKFSTL------------PPGGVCPDCGSK  157 (165)
T ss_dssp             CCCEEESSSCCEESSC------------CGGGBCTTTCCB
T ss_pred             cEEEECCCCCCcccCC------------CCCCcCCCCCCc
Confidence            3468888888877532            111368888865

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=87.88  E-value=0.11  Score=24.57  Aligned_cols=32  Identities=25%  Similarity=0.663  Sum_probs=16.7

Q ss_pred             ceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccc
Q psy3500          18 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQS   59 (98)
Q Consensus        18 ~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~   59 (98)
                      .|.|+.||.....          ..+..-+.|+.|+..|...
T Consensus        27 ~y~Cp~CG~~~v~----------r~atGiW~C~~Cg~~~agg   58 (83)
T 1vq8_Z           27 DHACPNCGEDRVD----------RQGTGIWQCSYCDYKFTGG   58 (83)
T ss_dssp             CEECSSSCCEEEE----------EEETTEEEETTTCCEEECC
T ss_pred             cCcCCCCCCccee----------ccCCCeEECCCCCCEecCC
Confidence            5677777653211          1122346777777665443

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=87.26  E-value=0.49  Score=26.30  Aligned_cols=26  Identities=27%  Similarity=0.618  Sum_probs=21.6

Q ss_pred             CCCeecCcCcccccC-hHHHHHHHhhh
Q psy3500          72 DKPYICQQCRDTFSS-LYLFRNHLQSH   97 (98)
Q Consensus        72 ~~~~~C~~C~~~f~~-~~~l~~H~~~h   97 (98)
                      ..+..|..|+..|.. -..|..|+..+
T Consensus       167 ~~~L~C~~C~~~f~n~~~~LK~HL~~e  193 (204)
T 3sp4_A          167 QEDLKCWRCGETFGRHFTKLKAHLQEE  193 (204)
T ss_dssp             GSCCBCTTTCCBCTTCHHHHHHHHHHH
T ss_pred             CCCceeCCCCchhhcccHHHHHHHHHH
Confidence            457899999999986 88899998754

>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A

Probab=86.30  E-value=0.56  Score=20.03  Aligned_cols=10  Identities=30%  Similarity=0.756  Sum_probs=5.4

Q ss_pred             CCCCCCCCcc
Q psy3500           2 YHCKTCSTLS   11 (98)
Q Consensus         2 ~~c~~c~~~~   11 (98)
                      |+|..||--+
T Consensus         4 y~C~~CGyvY   13 (52)
T 1e8j_A            4 YVCTVCGYEY   13 (52)
T ss_dssp             EECSSSCCCC
T ss_pred             EEeCCCCeEE
Confidence            4566666443

>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A

Probab=86.24  E-value=0.14  Score=28.07  Aligned_cols=27  Identities=30%  Similarity=0.578  Sum_probs=17.3

Q ss_pred             CceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccc
Q psy3500          17 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYS   55 (98)
Q Consensus        17 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~   55 (98)
                      ..|.|..||..+.-            ...|-.||+|+..
T Consensus       154 ~~~~C~~CG~~~~g------------~~~p~~CP~C~~~  180 (191)
T 1lko_A          154 TKWRCRNCGYVHEG------------TGAPELCPACAHP  180 (191)
T ss_dssp             EEEEETTTCCEEEE------------EECCSBCTTTCCB
T ss_pred             ceEEECCCCCEeeC------------CCCCCCCCCCcCC
Confidence            36888888876531            1345588888853

>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*

Probab=85.67  E-value=0.17  Score=26.25  Aligned_cols=14  Identities=21%  Similarity=0.710  Sum_probs=9.5

Q ss_pred             CceecCCCCCcCCC
Q psy3500          17 YKYTCYACDYHTLM   30 (98)
Q Consensus        17 ~~~~c~~C~~~~~~   30 (98)
                      ..+.|..||..|..
T Consensus        69 ~~~~C~~CG~~~~~   82 (139)
T 3a43_A           69 AVFKCRNCNYEWKL   82 (139)
T ss_dssp             CEEEETTTCCEEEG
T ss_pred             CcEECCCCCCEEec
Confidence            45778888777653

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=85.38  E-value=0.36  Score=21.95  Aligned_cols=20  Identities=35%  Similarity=0.763  Sum_probs=9.4

Q ss_pred             ceecCCCccccccchhHHHHH
Q psy3500          46 PYKCEYCAYSCTQSSALKIHE   66 (98)
Q Consensus        46 ~~~c~~c~~~~~~~~~l~~h~   66 (98)
                      ...|..|+..+... .+..|.
T Consensus        44 ~v~C~~C~~~~~~~-~l~~H~   63 (76)
T 2yuc_A           44 RLKCEFCGCDFSGE-AYESHE   63 (76)
T ss_dssp             CCCCSSSCCCCCHH-HHHHTT
T ss_pred             ceECCCCCCccCHH-HHHHHH
Confidence            44555555554432 244443

>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...

Probab=84.62  E-value=0.29  Score=20.93  Aligned_cols=9  Identities=33%  Similarity=0.988  Sum_probs=4.4

Q ss_pred             CCCCCCCCc
Q psy3500           2 YHCKTCSTL   10 (98)
Q Consensus         2 ~~c~~c~~~   10 (98)
                      |+|..||--
T Consensus         3 ~~C~~CGyv   11 (52)
T 1yk4_A            3 LSCKICGYI   11 (52)
T ss_dssp             EEESSSSCE
T ss_pred             EEeCCCCeE
Confidence            445555543

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=84.52  E-value=0.57  Score=18.77  Aligned_cols=13  Identities=15%  Similarity=0.514  Sum_probs=7.0

Q ss_pred             CeecCcCcccccC
Q psy3500          74 PYICQQCRDTFSS   86 (98)
Q Consensus        74 ~~~C~~C~~~f~~   86 (98)
                      .+.|+.|+..+..
T Consensus         9 ~~~C~~C~~~i~~   21 (39)
T 2i5o_A            9 QVPCEKCGSLVPV   21 (39)
T ss_dssp             EEECTTTCCEEEG
T ss_pred             CcccccccCcCCc
Confidence            3556666555543

>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=84.05  E-value=0.46  Score=20.13  Aligned_cols=10  Identities=30%  Similarity=1.089  Sum_probs=5.5

Q ss_pred             ceecCCCccc
Q psy3500          46 PYKCEYCAYS   55 (98)
Q Consensus        46 ~~~c~~c~~~   55 (98)
                      .+.|+.|+.+
T Consensus        37 R~~C~kCG~t   46 (50)
T 3j20_Y           37 RWACGKCGYT   46 (50)
T ss_dssp             EEECSSSCCE
T ss_pred             eEECCCCCCE
Confidence            3566666543

>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}

Probab=83.22  E-value=0.4  Score=22.55  Aligned_cols=14  Identities=14%  Similarity=0.491  Sum_probs=10.5

Q ss_pred             CCceecCCCCCcCC
Q psy3500          16 SYKYTCYACDYHTL   29 (98)
Q Consensus        16 ~~~~~c~~C~~~~~   29 (98)
                      ...|.|.+|+..+.
T Consensus        25 m~~y~C~vCGyvYD   38 (81)
T 2kn9_A           25 YKLFRCIQCGFEYD   38 (81)
T ss_dssp             CCEEEETTTCCEEE
T ss_pred             cceEEeCCCCEEEc
Confidence            35788999987664

>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...

Probab=82.26  E-value=0.58  Score=20.20  Aligned_cols=8  Identities=25%  Similarity=1.011  Sum_probs=4.1

Q ss_pred             eecCCCcc
Q psy3500          47 YKCEYCAY   54 (98)
Q Consensus        47 ~~c~~c~~   54 (98)
                      +.|++|+.
T Consensus        37 w~CP~Cg~   44 (54)
T 4rxn_A           37 WVCPLCGV   44 (54)
T ss_dssp             CBCTTTCC
T ss_pred             CcCcCCCC
Confidence            45555553

>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z

Probab=81.67  E-value=0.35  Score=24.32  Aligned_cols=14  Identities=36%  Similarity=1.016  Sum_probs=9.4

Q ss_pred             ceecCCCccccccc
Q psy3500          46 PYKCEYCAYSCTQS   59 (98)
Q Consensus        46 ~~~c~~c~~~~~~~   59 (98)
                      -+.|..|++.|...
T Consensus        78 IW~C~~Cgk~fAGG   91 (116)
T 3cc2_Z           78 IWQCSYCDYKFTGG   91 (116)
T ss_dssp             EEEETTTCCEEECC
T ss_pred             eEECCCCCCEEECC
Confidence            46788887776544

>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.16  E-value=0.75  Score=20.52  Aligned_cols=9  Identities=33%  Similarity=0.737  Sum_probs=4.2

Q ss_pred             ecCCCCCcC
Q psy3500          20 TCYACDYHT   28 (98)
Q Consensus        20 ~c~~C~~~~   28 (98)
                      .|..|+..|
T Consensus        29 ~C~~C~~~F   37 (63)
T 1x4v_A           29 TCERCSRNF   37 (63)
T ss_dssp             BCSSSCCBC
T ss_pred             ECCCCCccc
Confidence            444454444

>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1

Probab=80.79  E-value=0.28  Score=22.45  Aligned_cols=25  Identities=16%  Similarity=0.517  Sum_probs=15.6

Q ss_pred             CCCCCCCCcc-CCCCCCceecCCCCCcC
Q psy3500           2 YHCKTCSTLS-RPNISYKYTCYACDYHT   28 (98)
Q Consensus         2 ~~c~~c~~~~-~~~~~~~~~c~~C~~~~   28 (98)
                      +.|+ ||... ...+.+.-.|+ ||..+
T Consensus         5 v~C~-C~~~~~~~~~~kT~~C~-CG~~~   30 (71)
T 1gh9_A            5 FRCD-CGRALYSREGAKTRKCV-CGRTV   30 (71)
T ss_dssp             EEET-TSCCEEEETTCSEEEET-TTEEE
T ss_pred             EECC-CCCEEEEcCCCcEEECC-CCCee
Confidence            3577 77654 34455667786 87664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	98
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	4e-10
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	6e-04
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	1e-09
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	0.003
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	5e-09
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	8e-05
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	7e-09
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	5e-04
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	8e-09
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	6e-04
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	2e-08
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.003
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	1e-06
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	1e-06
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	2e-06
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	4e-06
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	7e-06
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	6e-05
d1ncsa_	47	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	1e-05
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	8e-05
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	1e-04
d2dmda3	29	g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {	1e-04
d2glia3	30	g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo	3e-04
d1a1ia1	29	g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus)	6e-04
d1x6ea2	26	g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (	8e-04
d1zfda_	32	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	8e-04
d1ubdc3	30	g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger	0.002

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (116), Expect = 4e-10
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG 71
          +   +    + YKC+ C  S + SS L  H R HTG
Sbjct: 2  RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG 37

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.4 bits (74), Expect = 6e-04
 Identities = 8/33 (24%), Positives = 14/33 (42%)

Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
           E +    + Y C +C  +FS       H ++H
Sbjct: 3  SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (112), Expect = 1e-09
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 41 HTGEKPYKCEYCAYSCTQSSALKIHERKHTG 71
          H+GEKPY C  C  + ++SS L  H+R HTG
Sbjct: 2  HSGEKPYGCVECGKAFSRSSILVQHQRVHTG 32

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.7 bits (70), Expect = 0.003
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 69 HTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          H+G+KPY C +C   FS   +   H + H
Sbjct: 2  HSGEKPYGCVECGKAFSRSSILVQHQRVH 30

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (109), Expect = 5e-09
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERK-HTGDKPYICQ 78
          +  KPY C+ C    ++   L  H ++ HT ++P+ CQ
Sbjct: 1  SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (81), Expect = 8e-05
 Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 19 YTCYACDYHTLMSEDMKKHMRK-HTGEKPYKCE 50
          Y C +C       + +  H+++ HT E+P+KC+
Sbjct: 6  YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (107), Expect = 7e-09
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG 71
            R  TG KP++C  C  S ++S  L +H ++H  
Sbjct: 2  STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.8 bits (75), Expect = 5e-04
 Identities = 11/33 (33%), Positives = 14/33 (42%)

Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
            R  TG KP+ C  C  +FS       H + H
Sbjct: 2  STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (107), Expect = 8e-09
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 39 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          R H+GEKPY+C  C    TQS  +K+H  +   + 
Sbjct: 1  RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (74), Expect = 6e-04
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 67 RKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          R H+G+KPY C  C   F+     + H+   
Sbjct: 1  RTHSGEKPYECYICHARFTQSGTMKMHILQK 31

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (104), Expect = 2e-08
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 39 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          R HTGEKPY C +C  +  Q   L +H +++    
Sbjct: 1  RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.8 bits (70), Expect = 0.003
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 67 RKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          R HTG+KPY C  C  TF    L   H + +
Sbjct: 1  RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 31

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.4 bits (92), Expect = 1e-06
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 41 HTGEKPYKCEYCAYSCTQSSALKIHERKHTG 71
           +G++P+ C  C  + T  +    H + HT 
Sbjct: 2  SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 39.1 bits (92), Expect = 1e-06
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          + + CE C  +  +   LK H R HT +K
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (91), Expect = 2e-06
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTG 71
          +KP++C  C  + ++S  L  H R HTG
Sbjct: 1  QKPFQCRICMRNFSRSDHLTTHIRTHTG 28

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (89), Expect = 4e-06
 Identities = 8/29 (27%), Positives = 11/29 (37%)

Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          K + C  C     +S  L  H + H   K
Sbjct: 1  KKFACPECPKRFMRSDHLSKHIKTHQNKK 29

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (87), Expect = 7e-06
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 16 SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY 51
          S+     AC       + +K+HM+ H+  + Y CE+
Sbjct: 1  SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 6e-05
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 47 YKCEY--CAYSCTQSSALKIHERKHTGDKPYICQ 78
          + C    C  S      LK H + H+  + YIC+
Sbjct: 2  FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.2 bits (86), Expect = 1e-05
 Identities = 6/40 (15%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 36 KHMRKHTGEKPYKCEYCA--YSCTQSSALKIHERKHTGDK 73
              K   +K ++C +     +  +   ++ H + H  D+
Sbjct: 8  DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (80), Expect = 8e-05
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 45 KPYKCEY--CAYSCTQSSALKIHERKHTGDK 73
          +P+ C +  C    T+S  L+ H+R HTG+K
Sbjct: 1  RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 1e-04
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          +K Y C+ C  S T  S    H   H G +PY C  C   F   +    H++ H
Sbjct: 1  DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 1e-04
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGD 72
          E+P+KC+ C Y+   SS L +H R HTGD
Sbjct: 1  ERPFKCQICPYASRNSSQLTVHLRSHTGD 29

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (77), Expect = 3e-04
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 45 KPYKCEY--CAYSCTQSSALKIHERKHTGD 72
          KP+KC +  C  S ++   LK H R HTG+
Sbjct: 1  KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.3 bits (74), Expect = 6e-04
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 45 KPYKCEY--CAYSCTQSSALKIHERKHTG 71
          +PY C    C    ++S+ L  H R HTG
Sbjct: 1  RPYACPVESCDRRFSRSADLTRHIRIHTG 29

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.2 bits (74), Expect = 8e-04
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 45 KPYKCEYCAYSCTQSSALKIHERKHT 70
          KPYKC  C  + +Q+S L  H+R HT
Sbjct: 1  KPYKCLECGKAFSQNSGLINHQRIHT 26

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 32

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 31.9 bits (73), Expect = 8e-04
 Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 44 EKPYKCEY--CAYSCTQSSALKIHERKHTG 71
          ++PY C++  C  +  ++  L  H++ H  
Sbjct: 1  DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.2 bits (71), Expect = 0.002
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 45 KPYKCEY--CAYSCTQSSALKIHERKHTGD 72
          KP++C +  C    +    L+ H R HTGD
Sbjct: 1  KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	98
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.84
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.79
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.56
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.55
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.54
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.53
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.52
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.5
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.43
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.42
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.41
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.41
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.4
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.3
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.29
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.28
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.26
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.25
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.24
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.23
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.23
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.19
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.15
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.14
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.13
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.12
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.09
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.04
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.04
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.03
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.99
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.98
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.97
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.96
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.93
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.88
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.78
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.74
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.7
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.64
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.63
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.58
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.58
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.54
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.53
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.47
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.4
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.37
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.33
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.31
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	98.29
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.23
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.23
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	98.19
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.14
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	98.12
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	98.12
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.09
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	98.05
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.96
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.93
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.92
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.84
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.84
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.82
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.77
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.76
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.74
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.68
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.62
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.62
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.62
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.58
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.57
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.51
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.5
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.49
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.47
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.43
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.42
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.32
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.15
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.14
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	97.1
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.07
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.07
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.07
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	97.06
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.0
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.74
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.74
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.55
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.26
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.14
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.09
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	96.09
d1y0jb1	36	U-shaped transcription factor, different fingers {	96.04
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.88
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.86
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	95.8
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	95.63
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	95.59
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	95.06
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	94.82
d2gmga1	105	Hypothetical protein PF0610 {Pyrococcus furiosus [	94.34
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	94.2
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	94.12
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	93.49
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	93.23
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	92.61
d1twfl_	46	RBP12 subunit of RNA polymerase II {Baker's yeast	91.78
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	91.55
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	90.88
d1tfia_	50	Transcriptional factor SII, C-terminal domain {Hum	89.69
d1iroa_	53	Rubredoxin {Clostridium pasteurianum [TaxId: 1501]	88.81
d2ghfa1	58	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	88.67
d2akla2	38	Hypothetical protein PA0128, N-terminal domain {Ps	87.89
d1brfa_	53	Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2	87.79
d2dsxa1	52	Rubredoxin {Desulfovibrio gigas [TaxId: 879]}	87.78
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	86.89
d1y02a2	51	Rififylin (FYVE-RING finger protein Sakura) {Human	86.69
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	85.68
d1zbdb_	124	Effector domain of rabphilin-3a {Rat (Rattus norve	85.64
d1akya2	38	Microbial and mitochondrial ADK, insert "zinc fing	85.5
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	85.49
d1wfka_	88	Zinc finger FYVE domain containing protein 19 {Mou	84.85
d1dx8a_	70	Rubredoxin {Guillardia theta [TaxId: 55529]}	84.64
d1s24a_	56	Two-iron rubredoxin {Pseudomonas oleovorans [TaxId	84.27
d1v5na_	89	Pdi-like hypothetical protein At1g60420 {Thale cre	83.78
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	83.2
d1d4ua2	36	DNA repair factor XPA DNA- and RPA-binding domain,	82.48
d1vfya_	67	vps27p protein {Baker's yeast (Saccharomyces cerev	82.16
d1dvpa2	72	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	81.5
d1dxga_	36	Desulforedoxin {Desulfovibrio gigas [TaxId: 879]}	80.85
d1dfxa2	36	Desulfoferrodoxin N-terminal domain {Desulfovibrio	80.2

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.4e-21  Score=84.41  Aligned_cols=53  Identities=32%  Similarity=0.575  Sum_probs=44.5

Q ss_pred             CCceecCCCccccccchhHHHHHHhhCCCCCeecCcCcccccChHHHHHHHhhh
Q psy3500          44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        44 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      |+||.| .||+.|.....|..|+++|+|++||.|..||++|...+.|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            468888 48888888888888888888888888888888888888888888876

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.5e-19  Score=79.00  Aligned_cols=53  Identities=26%  Similarity=0.518  Sum_probs=50.6

Q ss_pred             CCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCccccccchhHHHHHHhh
Q psy3500          16 SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH   69 (98)
Q Consensus        16 ~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~   69 (98)
                      |++|+| .||+.|.....|..|+++|++++||.|.+|++.|...+.|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            689999 59999999999999999999999999999999999999999999865

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.6e-15  Score=59.09  Aligned_cols=31  Identities=35%  Similarity=0.757  Sum_probs=24.9

Q ss_pred             hhCCCCCeecCcCcccccChHHHHHHHhhhC
Q psy3500          68 KHTGDKPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        68 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      +|+|++||+|..||++|.+.+.|..|+++|+
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~Ht   31 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHT   31 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGG
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccC
Confidence            4778888888888888888888888888874

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=9.9e-16  Score=61.52  Aligned_cols=34  Identities=32%  Similarity=0.542  Sum_probs=30.5

Q ss_pred             HHHhhCCCCCeecCcCcccccChHHHHHHHhhhC
Q psy3500          65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        65 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      |.+.|+|++||.|..|++.|.+.+.|..|+++|.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            5678999999999999999999999999999883

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.1e-15  Score=61.79  Aligned_cols=34  Identities=24%  Similarity=0.516  Sum_probs=27.1

Q ss_pred             HHHhhCCCCCeecCcCcccccChHHHHHHHhhhC
Q psy3500          65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        65 h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      |+++|++++||.|..||++|.+.+.|..|+++|+
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   36 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT   36 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCccCC
Confidence            5667788888888888888888888888888775

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.6e-15  Score=59.16  Aligned_cols=32  Identities=41%  Similarity=0.832  Sum_probs=24.1

Q ss_pred             HhhCCCCCeecCcCcccccChHHHHHHHhhhC
Q psy3500          67 RKHTGDKPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        67 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      ++|+|++||.|..|+++|.+.+.|..|+++|+
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccC
Confidence            35777777777777777777777777777764

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=6.1e-15  Score=58.15  Aligned_cols=30  Identities=27%  Similarity=0.727  Sum_probs=24.7

Q ss_pred             hCCCCCeecCcCcccccChHHHHHHHhhhC
Q psy3500          69 HTGDKPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        69 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      ++|++||.|..|++.|.+...|..|+++|+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccC
Confidence            578888888888888888888888888874

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.5e-14  Score=58.38  Aligned_cols=35  Identities=29%  Similarity=0.671  Sum_probs=17.1

Q ss_pred             CCceecCCCCCcCCCHHHHHHHHH-HhcCCCceecC
Q psy3500          16 SYKYTCYACDYHTLMSEDMKKHMR-KHTGEKPYKCE   50 (98)
Q Consensus        16 ~~~~~c~~C~~~~~~~~~l~~h~~-~h~~~~~~~c~   50 (98)
                      ++||.|.+|++.|.....|..|++ +|++++||.|.
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            344555555555555555555543 35555555443

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.4e-14  Score=57.31  Aligned_cols=36  Identities=33%  Similarity=0.673  Sum_probs=33.3

Q ss_pred             CCCceecCCCccccccchhHHHHHH-hhCCCCCeecC
Q psy3500          43 GEKPYKCEYCAYSCTQSSALKIHER-KHTGDKPYICQ   78 (98)
Q Consensus        43 ~~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~~~~~C~   78 (98)
                      .++||.|.+|++.|...+.|..|++ +|++++||.|.
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            4689999999999999999999975 79999999996

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.1e-14  Score=52.13  Aligned_cols=26  Identities=38%  Similarity=0.669  Sum_probs=23.7

Q ss_pred             CCeecCcCcccccChHHHHHHHhhhC
Q psy3500          73 KPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        73 ~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      +||+|.+||++|.+.+.|..|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            58999999999999999999999985

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-14  Score=58.74  Aligned_cols=36  Identities=36%  Similarity=0.664  Sum_probs=21.1

Q ss_pred             HHHHhcCCCceecCCCccccccchhHHHHHHhhCCC
Q psy3500          37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGD   72 (98)
Q Consensus        37 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   72 (98)
                      |+.+|++++||.|.+|++.|...+.|..|+++|+||
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            344555666666666666666666666666666554

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=6.3e-14  Score=52.48  Aligned_cols=27  Identities=30%  Similarity=0.706  Sum_probs=24.4

Q ss_pred             CCCeecCcCcccccChHHHHHHHhhhC
Q psy3500          72 DKPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        72 ~~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      |+||.|..|++.|.+.+.|..|+++|+
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCcc
Confidence            589999999999999999999999884

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=8.5e-14  Score=55.33  Aligned_cols=29  Identities=31%  Similarity=0.725  Sum_probs=22.5

Q ss_pred             hhCCCCCeecCcCcccccChHHHHHHHhh
Q psy3500          68 KHTGDKPYICQQCRDTFSSLYLFRNHLQS   96 (98)
Q Consensus        68 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~   96 (98)
                      +|+|++||.|+.|++.|.+...|..|++.
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~   30 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQ   30 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHH
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHccc
Confidence            57788888888888888888888888643

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.2e-13  Score=53.71  Aligned_cols=31  Identities=29%  Similarity=0.398  Sum_probs=15.5

Q ss_pred             CCCCCceecCCCCCcCCCHHHHHHHHHHhcC
Q psy3500          13 PNISYKYTCYACDYHTLMSEDMKKHMRKHTG   43 (98)
Q Consensus        13 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~   43 (98)
                      |++++||+|.+|++.|...+.|..|+++|++
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~Htg   32 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTG   32 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGC
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCC
Confidence            3445555555555555555555555555444

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=1.5e-12  Score=51.12  Aligned_cols=30  Identities=17%  Similarity=0.345  Sum_probs=17.6

Q ss_pred             CCCCceecCCCCCcCCCHHHHHHHHHHhcC
Q psy3500          14 NISYKYTCYACDYHTLMSEDMKKHMRKHTG   43 (98)
Q Consensus        14 ~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~   43 (98)
                      +|++||+|.+|++.|....+|..|+++|+.
T Consensus         3 TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           3 SGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCccccCCCCCCcccChHHHHHHccccCC
Confidence            455566666666666666666666555554

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1e-12  Score=52.18  Aligned_cols=30  Identities=17%  Similarity=0.315  Sum_probs=14.7

Q ss_pred             CCCCCceecCCCCCcCCCHHHHHHHHHHhc
Q psy3500          13 PNISYKYTCYACDYHTLMSEDMKKHMRKHT   42 (98)
Q Consensus        13 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~   42 (98)
                      +++++||+|.+|++.|...+.|..|+++|.
T Consensus         3 HTgekPy~C~~C~k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           3 HTGEKPYACSHCDKTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             CCCCCCEECSSSSCEESSHHHHHHHHHHTT
T ss_pred             CCCCCCEECCCCCCCcCCHhHHHHhCcccC
Confidence            444455555555555555555555544444

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=1.7e-12  Score=48.46  Aligned_cols=28  Identities=29%  Similarity=0.597  Sum_probs=17.6

Q ss_pred             CCceecCCCCCcCCCHHHHHHHHHHhcC
Q psy3500          16 SYKYTCYACDYHTLMSEDMKKHMRKHTG   43 (98)
Q Consensus        16 ~~~~~c~~C~~~~~~~~~l~~h~~~h~~   43 (98)
                      |+||.|.+|++.|...+.|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            4566666666666666666666666653

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.26  E-value=1.9e-12  Score=48.87  Aligned_cols=24  Identities=33%  Similarity=0.692  Sum_probs=9.2

Q ss_pred             eecCCCCCcCCCHHHHHHHHHHhc
Q psy3500          19 YTCYACDYHTLMSEDMKKHMRKHT   42 (98)
Q Consensus        19 ~~c~~C~~~~~~~~~l~~h~~~h~   42 (98)
                      |.|++|++.|...+.|..|+++|+
T Consensus         3 ~~C~~C~k~F~~~~~L~~H~r~HT   26 (29)
T d2adra1           3 FVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             BCCTTTCCCBSCHHHHHHHHHTTT
T ss_pred             CCCCCCCCCCCCchHcccccCccc
Confidence            333333333333333333333333

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=6.1e-12  Score=50.19  Aligned_cols=32  Identities=19%  Similarity=0.343  Sum_probs=18.2

Q ss_pred             cCCCCCCceecCCCCCcCCCHHHHHHHHHHhc
Q psy3500          11 SRPNISYKYTCYACDYHTLMSEDMKKHMRKHT   42 (98)
Q Consensus        11 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~   42 (98)
                      ..+++++||.|.+|++.|...+.|..|+++|.
T Consensus         4 R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             STTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            34555556666666666655555555555553

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.24  E-value=4.4e-12  Score=47.85  Aligned_cols=29  Identities=34%  Similarity=0.696  Sum_probs=27.5

Q ss_pred             CceecCCCccccccchhHHHHHHhhCCCC
Q psy3500          45 KPYKCEYCAYSCTQSSALKIHERKHTGDK   73 (98)
Q Consensus        45 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   73 (98)
                      +||.|++|++.|...+.|..|+++|+||+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            58999999999999999999999999985

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=4.7e-12  Score=47.69  Aligned_cols=27  Identities=26%  Similarity=0.689  Sum_probs=14.1

Q ss_pred             ceecCCCCCcCCCHHHHHHHHHHhcCC
Q psy3500          18 KYTCYACDYHTLMSEDMKKHMRKHTGE   44 (98)
Q Consensus        18 ~~~c~~C~~~~~~~~~l~~h~~~h~~~   44 (98)
                      ||.|++|++.|...+.|..|+++|+++
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CEECCcCCCeecchHHhhhhcCccCCc
Confidence            455555555555555555555555544

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=4.1e-12  Score=47.88  Aligned_cols=27  Identities=22%  Similarity=0.481  Sum_probs=16.5

Q ss_pred             ceecCCCccccccchhHHHHHHhhCCC
Q psy3500          46 PYKCEYCAYSCTQSSALKIHERKHTGD   72 (98)
Q Consensus        46 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   72 (98)
                      ||.|++|++.|...+.|..|+++|+|+
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CEECCcCCCeecchHHhhhhcCccCCc
Confidence            556666666666666666666666655

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=6e-12  Score=49.77  Aligned_cols=27  Identities=33%  Similarity=0.646  Sum_probs=15.9

Q ss_pred             CccccccchhHHHHHHhhCCCCCeecC
Q psy3500          52 CAYSCTQSSALKIHERKHTGDKPYICQ   78 (98)
Q Consensus        52 c~~~~~~~~~l~~h~~~~~~~~~~~C~   78 (98)
                      |++.|.....|..|+++|+|++||.|.
T Consensus         9 C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           9 CGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             TCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             CCCeeCChhHhccccCeeCCCCCEeCC
Confidence            555555555566665556666555553

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.15  E-value=8.7e-13  Score=55.33  Aligned_cols=32  Identities=19%  Similarity=0.536  Sum_probs=17.2

Q ss_pred             hcCCCceecCC--CccccccchhHHHHHHhhCCC
Q psy3500          41 HTGEKPYKCEY--CAYSCTQSSALKIHERKHTGD   72 (98)
Q Consensus        41 h~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~   72 (98)
                      |.+++||.|.+  |++.|...+.|..|+++|+|+
T Consensus        13 h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htge   46 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             ccCCCCeECCcCCCCccccCchHHHhhcccccCC
Confidence            45555555544  555555555555555555554

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2e-11  Score=44.49  Aligned_cols=25  Identities=24%  Similarity=0.486  Sum_probs=15.2

Q ss_pred             CceecCCCCCcCCCHHHHHHHHHHh
Q psy3500          17 YKYTCYACDYHTLMSEDMKKHMRKH   41 (98)
Q Consensus        17 ~~~~c~~C~~~~~~~~~l~~h~~~h   41 (98)
                      +||+|.+||+.|...+.|..|+++|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            3566666666666666666666555

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=5e-11  Score=47.13  Aligned_cols=27  Identities=30%  Similarity=0.477  Sum_probs=15.3

Q ss_pred             CCCCCceecCCCCCcCCCHHHHHHHHH
Q psy3500          13 PNISYKYTCYACDYHTLMSEDMKKHMR   39 (98)
Q Consensus        13 ~~~~~~~~c~~C~~~~~~~~~l~~h~~   39 (98)
                      |+|++||.|..|++.|....+|..|++
T Consensus         3 HTgekP~~C~~C~k~F~~~~~L~~H~~   29 (36)
T d2ct1a2           3 HSGEKPYECYICHARFTQSGTMKMHIL   29 (36)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHH
T ss_pred             cCCCCCEeCCCCcccccchHHHHHHcc
Confidence            455555555555555555555555544

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=3.2e-11  Score=47.62  Aligned_cols=32  Identities=28%  Similarity=0.737  Sum_probs=29.5

Q ss_pred             eecCC--CCCcCCCHHHHHHHHHHhcCCCceecC
Q psy3500          19 YTCYA--CDYHTLMSEDMKKHMRKHTGEKPYKCE   50 (98)
Q Consensus        19 ~~c~~--C~~~~~~~~~l~~h~~~h~~~~~~~c~   50 (98)
                      |.|+.  |++.|.....|..|+++|++++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            56765  999999999999999999999999996

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.9e-11  Score=45.40  Aligned_cols=26  Identities=42%  Similarity=0.805  Sum_probs=22.9

Q ss_pred             CCeecCc--CcccccChHHHHHHHhhhC
Q psy3500          73 KPYICQQ--CRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        73 ~~~~C~~--C~~~f~~~~~l~~H~~~h~   98 (98)
                      +||.|.+  |++.|...+.|..|+++|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~Ht   28 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHT   28 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCc
Confidence            5889977  9999999999999999885

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=5.5e-11  Score=45.03  Aligned_cols=26  Identities=35%  Similarity=0.750  Sum_probs=22.5

Q ss_pred             CCeecCc--CcccccChHHHHHHHhhhC
Q psy3500          73 KPYICQQ--CRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        73 ~~~~C~~--C~~~f~~~~~l~~H~~~h~   98 (98)
                      +||.|..  |++.|...+.|..|+|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HT   28 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHT   28 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCCceECcHHHcCccccccC
Confidence            5889976  9999999999999999884

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=9.1e-11  Score=44.99  Aligned_cols=27  Identities=33%  Similarity=0.691  Sum_probs=22.2

Q ss_pred             CCCeecCc--CcccccChHHHHHHHhhhC
Q psy3500          72 DKPYICQQ--CRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        72 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~   98 (98)
                      |+||.|..  |++.|.....|.+|+++|+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            57888876  8888888888888888874

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.03  E-value=6.9e-11  Score=49.41  Aligned_cols=37  Identities=30%  Similarity=0.557  Sum_probs=29.3

Q ss_pred             hHHHHHHhhCCCCCeecCc--CcccccChHHHHHHHhhhC
Q psy3500          61 ALKIHERKHTGDKPYICQQ--CRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        61 ~l~~h~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~   98 (98)
                      .+..|+. +++++||.|..  |++.|...+.|..|+++|+
T Consensus         6 ~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Ht   44 (47)
T d1ncsa_           6 SIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             SGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             hhcchhh-ccCCCCeECCcCCCCccccCchHHHhhccccc
Confidence            3444554 88888999976  9999999988999988885

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=4.3e-11  Score=44.44  Aligned_cols=26  Identities=27%  Similarity=0.825  Sum_probs=21.1

Q ss_pred             CCeecCc--CcccccChHHHHHHHhhhC
Q psy3500          73 KPYICQQ--CRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        73 ~~~~C~~--C~~~f~~~~~l~~H~~~h~   98 (98)
                      +||.|.+  |++.|....+|..|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5788866  8888888888888888875

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=3.5e-10  Score=42.69  Aligned_cols=26  Identities=35%  Similarity=0.594  Sum_probs=13.2

Q ss_pred             ceecCC--CCCcCCCHHHHHHHHHHhcC
Q psy3500          18 KYTCYA--CDYHTLMSEDMKKHMRKHTG   43 (98)
Q Consensus        18 ~~~c~~--C~~~~~~~~~l~~h~~~h~~   43 (98)
                      ||.|.+  |++.|...+.|..|+++|++
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHTTT
T ss_pred             CeeCCCCCCCceECChhHhhhhcCcCcC
Confidence            444444  55555555555555555544

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=1.3e-10  Score=43.53  Aligned_cols=26  Identities=31%  Similarity=0.692  Sum_probs=22.2

Q ss_pred             CCeecCc--CcccccChHHHHHHHhhhC
Q psy3500          73 KPYICQQ--CRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        73 ~~~~C~~--C~~~f~~~~~l~~H~~~h~   98 (98)
                      +||.|.+  |++.|.....|..|+++|+
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccC
Confidence            5888866  9999999999999998884

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=3.9e-10  Score=42.61  Aligned_cols=26  Identities=27%  Similarity=0.643  Sum_probs=13.2

Q ss_pred             ceecCC--CCCcCCCHHHHHHHHHHhcC
Q psy3500          18 KYTCYA--CDYHTLMSEDMKKHMRKHTG   43 (98)
Q Consensus        18 ~~~c~~--C~~~~~~~~~l~~h~~~h~~   43 (98)
                      ||.|++  |++.|...+.|..|+++|++
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CccCCCCCCCceECcHHHcCccccccCC
Confidence            444543  55555555555555555544

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=3.8e-10  Score=42.99  Aligned_cols=26  Identities=23%  Similarity=0.701  Sum_probs=22.4

Q ss_pred             CCeecC--cCcccccChHHHHHHHhhhC
Q psy3500          73 KPYICQ--QCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        73 ~~~~C~--~C~~~f~~~~~l~~H~~~h~   98 (98)
                      +||.|+  .|++.|...+.|..|+++|+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Ht   28 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccc
Confidence            578885  59999999999999999885

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=7.4e-10  Score=42.15  Aligned_cols=27  Identities=44%  Similarity=0.974  Sum_probs=14.7

Q ss_pred             ceecC--CCccccccchhHHHHHHhhCCC
Q psy3500          46 PYKCE--YCAYSCTQSSALKIHERKHTGD   72 (98)
Q Consensus        46 ~~~c~--~c~~~~~~~~~l~~h~~~~~~~   72 (98)
                      ||.|+  .|++.|...+.|..|+++|+|+
T Consensus         2 pf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             cCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            45553  3555555555555555555554

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=4.8e-09  Score=37.66  Aligned_cols=26  Identities=27%  Similarity=0.629  Sum_probs=21.1

Q ss_pred             CCCeecCcCcccccChHHHHHHHhhh
Q psy3500          72 DKPYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        72 ~~~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      ++||.|..||+.|..+....+|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            46888888888888888888888776

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=2.9e-09  Score=39.77  Aligned_cols=26  Identities=42%  Similarity=0.795  Sum_probs=13.5

Q ss_pred             ceecCC--CccccccchhHHHHHHhhCC
Q psy3500          46 PYKCEY--CAYSCTQSSALKIHERKHTG   71 (98)
Q Consensus        46 ~~~c~~--c~~~~~~~~~l~~h~~~~~~   71 (98)
                      ||.|++  |++.|...+.|..|+++|+|
T Consensus         2 p~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CeECCCCCCCcEECchhHhhhhcCccCC
Confidence            455544  55555555555555555543

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=9.5e-09  Score=39.20  Aligned_cols=26  Identities=27%  Similarity=0.731  Sum_probs=14.1

Q ss_pred             CceecCC--CccccccchhHHHHHHhhC
Q psy3500          45 KPYKCEY--CAYSCTQSSALKIHERKHT   70 (98)
Q Consensus        45 ~~~~c~~--c~~~~~~~~~l~~h~~~~~   70 (98)
                      +||.|..  |++.|...+.|..|+++|+
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            4555544  5555555555555555554

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.5e-08  Score=37.72  Aligned_cols=31  Identities=35%  Similarity=0.679  Sum_probs=24.6

Q ss_pred             CceecCCCccccccchhHHHHHHhhCCCCCe
Q psy3500          45 KPYKCEYCAYSCTQSSALKIHERKHTGDKPY   75 (98)
Q Consensus        45 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~   75 (98)
                      +...|.+||+.|.....|.+|..+|++++||
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            4567888888888888888888888888876

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1e-08  Score=35.66  Aligned_cols=25  Identities=36%  Similarity=0.610  Sum_probs=16.4

Q ss_pred             eecCCCCCcCCCHHHHHHHHHHhcC
Q psy3500          19 YTCYACDYHTLMSEDMKKHMRKHTG   43 (98)
Q Consensus        19 ~~c~~C~~~~~~~~~l~~h~~~h~~   43 (98)
                      .+|..|++.|..+..|..|+++|++
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CccchhhhHhcchhHHHHHhhccCC
Confidence            4566666667777777777666653

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.2e-08  Score=37.65  Aligned_cols=25  Identities=40%  Similarity=0.774  Sum_probs=14.6

Q ss_pred             ceecCC--CccccccchhHHHHHHhhC
Q psy3500          46 PYKCEY--CAYSCTQSSALKIHERKHT   70 (98)
Q Consensus        46 ~~~c~~--c~~~~~~~~~l~~h~~~~~   70 (98)
                      ||.|+.  |++.|...+.|..|++.|+
T Consensus         2 Pf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            555554  6666666666666665553

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=3.7e-08  Score=35.03  Aligned_cols=27  Identities=30%  Similarity=0.583  Sum_probs=23.4

Q ss_pred             CCCeecCcCcccccChHHHHHHHhhhC
Q psy3500          72 DKPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        72 ~~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      ++||+|..|...-..+++|..|+|.|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~ht   27 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHT   27 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCC
T ss_pred             CCcceeeecccccCCchheEEeeeccc
Confidence            578999999888888999999998885

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=3.7e-08  Score=34.20  Aligned_cols=25  Identities=28%  Similarity=0.640  Sum_probs=18.4

Q ss_pred             CeecCcCcccccChHHHHHHHhhhC
Q psy3500          74 PYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        74 ~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      |++|..|++.|.....|..|+|.|+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            4567777777777777777777764

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=6.2e-08  Score=35.19  Aligned_cols=29  Identities=28%  Similarity=0.592  Sum_probs=22.1

Q ss_pred             CCceecCCCCCcCCCHHHHHHHHHHhcCC
Q psy3500          16 SYKYTCYACDYHTLMSEDMKKHMRKHTGE   44 (98)
Q Consensus        16 ~~~~~c~~C~~~~~~~~~l~~h~~~h~~~   44 (98)
                      ++||.|++|...|..++.+.-|.++|.+.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            46788888888888888887777777664

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.47  E-value=8e-08  Score=34.40  Aligned_cols=26  Identities=35%  Similarity=0.743  Sum_probs=19.1

Q ss_pred             CCceecCCCccccccchhHHHHHHhh
Q psy3500          44 EKPYKCEYCAYSCTQSSALKIHERKH   69 (98)
Q Consensus        44 ~~~~~c~~c~~~~~~~~~l~~h~~~~   69 (98)
                      ++||.|..||+.|..+....+|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            46777777777777777777777665

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.9e-07  Score=33.00  Aligned_cols=24  Identities=21%  Similarity=0.519  Sum_probs=18.5

Q ss_pred             eecCcCcccccChHHHHHHHhhhC
Q psy3500          75 YICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        75 ~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      +.|.+||++|..++.|.+|+.+|+
T Consensus         3 hvc~ecgkaf~essklkrh~lvht   26 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHT   26 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTS
T ss_pred             chHHHHhHHHHHHHHHHHHhhccc
Confidence            567788888888888888877764

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=2.3e-07  Score=32.78  Aligned_cols=24  Identities=42%  Similarity=0.649  Sum_probs=13.0

Q ss_pred             ecCCCccccccchhHHHHHHhhCC
Q psy3500          48 KCEYCAYSCTQSSALKIHERKHTG   71 (98)
Q Consensus        48 ~c~~c~~~~~~~~~l~~h~~~~~~   71 (98)
                      .|..||+.|...+.|.+|+..|+|
T Consensus         4 vc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           4 VCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             hHHHHhHHHHHHHHHHHHhhcccC
Confidence            455555555555555555555554

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=2.4e-07  Score=33.61  Aligned_cols=26  Identities=35%  Similarity=0.678  Sum_probs=19.0

Q ss_pred             CCCeecCcCcccccChHHHHHHHhhh
Q psy3500          72 DKPYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        72 ~~~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      ++||.|+.|...|....-+.-|.|.|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrsh   26 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSH   26 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHH
T ss_pred             CCCcccchHHHHhhccccceEeeecc
Confidence            46777777777777777777777765

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=4.2e-07  Score=31.99  Aligned_cols=26  Identities=31%  Similarity=0.653  Sum_probs=23.8

Q ss_pred             CCeecCcCcccccChHHHHHHHhhhC
Q psy3500          73 KPYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        73 ~~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      +||+|..|...-...+.|..|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            68999999999999999999999983

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=98.29  E-value=3.7e-07  Score=31.31  Aligned_cols=23  Identities=26%  Similarity=0.605  Sum_probs=20.2

Q ss_pred             eecCcCcccccChHHHHHHHhhh
Q psy3500          75 YICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        75 ~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      |+|..|.++|...+.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            57888999999999999999887

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=6.7e-07  Score=31.71  Aligned_cols=27  Identities=48%  Similarity=1.072  Sum_probs=14.9

Q ss_pred             CceecCCCccccccchhHHHHHHhhCC
Q psy3500          45 KPYKCEYCAYSCTQSSALKIHERKHTG   71 (98)
Q Consensus        45 ~~~~c~~c~~~~~~~~~l~~h~~~~~~   71 (98)
                      +||.|+.|...-...+.|..|++.|+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            455555555555555555555555554

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=3e-07  Score=34.08  Aligned_cols=32  Identities=28%  Similarity=0.508  Sum_probs=28.5

Q ss_pred             CceecCCCCCcCCCHHHHHHHHHHhcCCCcee
Q psy3500          17 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYK   48 (98)
Q Consensus        17 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~   48 (98)
                      +...|.+||+.|.....|.+|..+|++++||.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            44679999999999999999999999999873

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=98.19  E-value=7.2e-07  Score=30.57  Aligned_cols=24  Identities=25%  Similarity=0.607  Sum_probs=18.8

Q ss_pred             eecCCCCCcCCCHHHHHHHHHHhc
Q psy3500          19 YTCYACDYHTLMSEDMKKHMRKHT   42 (98)
Q Consensus        19 ~~c~~C~~~~~~~~~l~~h~~~h~   42 (98)
                      |+|..|++.|..++.|.+|+++|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            578888888888888888877664

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=2.5e-06  Score=30.39  Aligned_cols=26  Identities=35%  Similarity=0.659  Sum_probs=16.7

Q ss_pred             eecCCCCCcCCCHHHHHHHHHHhcCC
Q psy3500          19 YTCYACDYHTLMSEDMKKHMRKHTGE   44 (98)
Q Consensus        19 ~~c~~C~~~~~~~~~l~~h~~~h~~~   44 (98)
                      |.|+.|+..-..++.|+.|+++|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            55666666666666666666666654

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.12  E-value=1.6e-06  Score=33.59  Aligned_cols=26  Identities=27%  Similarity=0.683  Sum_probs=21.8

Q ss_pred             CCCeecCcCcccccChHHHHHHHhhh
Q psy3500          72 DKPYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        72 ~~~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      .+.|.|..|++.|.....|--|++.|
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~H   28 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVH   28 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTT
T ss_pred             CCccCCCCCCCccCCcccccchHhhh
Confidence            35688999999999998898888877

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.12  E-value=1.7e-06  Score=33.49  Aligned_cols=28  Identities=25%  Similarity=0.479  Sum_probs=22.1

Q ss_pred             CceecCCCCCcCCCHHHHHHHHHHhcCC
Q psy3500          17 YKYTCYACDYHTLMSEDMKKHMRKHTGE   44 (98)
Q Consensus        17 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~   44 (98)
                      +.|+|..|++.|.+...|-.||+.|..+
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~   31 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRD   31 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCS
T ss_pred             CccCCCCCCCccCCcccccchHhhhcch
Confidence            4578888888888888888888877654

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.8e-06  Score=30.72  Aligned_cols=24  Identities=25%  Similarity=0.721  Sum_probs=20.9

Q ss_pred             eecCcCcccccChHHHHHHHhhhC
Q psy3500          75 YICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        75 ~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      |.|+.||.....++.|..|+|+|+
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT   25 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHT   25 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTS
T ss_pred             ccccccCcccCCHHHHHHHHHHhc
Confidence            778889988899999999998885

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=98.05  E-value=3.4e-06  Score=29.94  Aligned_cols=26  Identities=31%  Similarity=0.648  Sum_probs=21.3

Q ss_pred             CCeecCc--CcccccChHHHHHHHhhhC
Q psy3500          73 KPYICQQ--CRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        73 ~~~~C~~--C~~~f~~~~~l~~H~~~h~   98 (98)
                      .||+|+.  |++.|...+.|.+|.++|+
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvha   29 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVHA   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhccC
Confidence            4788864  8899999999999988873

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=6.4e-06  Score=32.13  Aligned_cols=24  Identities=38%  Similarity=0.710  Sum_probs=15.4

Q ss_pred             CCCCeecCcCcccccChHHHHHHH
Q psy3500          71 GDKPYICQQCRDTFSSLYLFRNHL   94 (98)
Q Consensus        71 ~~~~~~C~~C~~~f~~~~~l~~H~   94 (98)
                      |-+||+|..|++.|-+...+.+|.
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhh
Confidence            456666666666666666666664

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=7e-06  Score=29.65  Aligned_cols=24  Identities=29%  Similarity=0.885  Sum_probs=18.5

Q ss_pred             CCeecCc--CcccccChHHHHHHHhh
Q psy3500          73 KPYICQQ--CRDTFSSLYLFRNHLQS   96 (98)
Q Consensus        73 ~~~~C~~--C~~~f~~~~~l~~H~~~   96 (98)
                      +||.|..  |++.+...+.|+.|++.
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~   26 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKT   26 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHH
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHh
Confidence            4777755  77888888888888875

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=9.7e-06  Score=28.77  Aligned_cols=25  Identities=28%  Similarity=0.687  Sum_probs=12.1

Q ss_pred             eecCCCccccccchhHHHHHHhhCC
Q psy3500          47 YKCEYCAYSCTQSSALKIHERKHTG   71 (98)
Q Consensus        47 ~~c~~c~~~~~~~~~l~~h~~~~~~   71 (98)
                      |.|.+|...|...-.|..|+.+|+|
T Consensus         5 ftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           5 FTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             EEeHHHHHHHHHHHhheeeeecccC
Confidence            4444444444444444444444444

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.84  E-value=1.9e-05  Score=27.37  Aligned_cols=25  Identities=44%  Similarity=0.654  Sum_probs=14.3

Q ss_pred             ecCCCCCcCCCHHHHHHHHHHhcCC
Q psy3500          20 TCYACDYHTLMSEDMKKHMRKHTGE   44 (98)
Q Consensus        20 ~c~~C~~~~~~~~~l~~h~~~h~~~   44 (98)
                      +|+.|.+.|.++..|+.|-+.|+++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            3555666666655565555555554

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.84  E-value=9.8e-06  Score=28.09  Aligned_cols=26  Identities=42%  Similarity=0.759  Sum_probs=21.5

Q ss_pred             ecCCCccccccchhHHHHHHhhCCCC
Q psy3500          48 KCEYCAYSCTQSSALKIHERKHTGDK   73 (98)
Q Consensus        48 ~c~~c~~~~~~~~~l~~h~~~~~~~~   73 (98)
                      .|+.|.+.|.+...|..|-+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            57888888888888888888888874

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.7e-05  Score=28.29  Aligned_cols=24  Identities=25%  Similarity=0.731  Sum_probs=17.6

Q ss_pred             CceecCCCCCcCCCHHHHHHHHHH
Q psy3500          17 YKYTCYACDYHTLMSEDMKKHMRK   40 (98)
Q Consensus        17 ~~~~c~~C~~~~~~~~~l~~h~~~   40 (98)
                      +||.|..|+......++|+.|+++
T Consensus         1 kpy~cqyc~yrsadssnlkthikt   24 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CCccccccccccccchhhhhhhhc
Confidence            467777777777777777777764

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=2.1e-05  Score=27.55  Aligned_cols=26  Identities=38%  Similarity=0.812  Sum_probs=19.8

Q ss_pred             CceecCCCCCcCCCHHHHHHHHHHhc
Q psy3500          17 YKYTCYACDYHTLMSEDMKKHMRKHT   42 (98)
Q Consensus        17 ~~~~c~~C~~~~~~~~~l~~h~~~h~   42 (98)
                      +||+|..|+..-...+.|..|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            57788888877777778888877764

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=2.8e-05  Score=27.54  Aligned_cols=29  Identities=31%  Similarity=0.557  Sum_probs=25.7

Q ss_pred             CCceecCCCCCcCCCHHHHHHHHHHhcCC
Q psy3500          16 SYKYTCYACDYHTLMSEDMKKHMRKHTGE   44 (98)
Q Consensus        16 ~~~~~c~~C~~~~~~~~~l~~h~~~h~~~   44 (98)
                      +.-|.|..|...|...-.|..||.+|+++
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            34689999999999999999999999874

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=3.7e-06  Score=30.68  Aligned_cols=25  Identities=36%  Similarity=0.817  Sum_probs=18.9

Q ss_pred             CCeecCc--CcccccChHHHHHHH-hhh
Q psy3500          73 KPYICQQ--CRDTFSSLYLFRNHL-QSH   97 (98)
Q Consensus        73 ~~~~C~~--C~~~f~~~~~l~~H~-~~h   97 (98)
                      +||.|..  |.++|...++...|+ |+|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTH   28 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTH   28 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTT
T ss_pred             CCccccCCChhhhhcchhhhhhhccccc
Confidence            4777755  888888888888886 666

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=2.8e-05  Score=28.04  Aligned_cols=23  Identities=35%  Similarity=0.787  Sum_probs=12.4

Q ss_pred             ceecCC--CccccccchhHHHHHHh
Q psy3500          46 PYKCEY--CAYSCTQSSALKIHERK   68 (98)
Q Consensus        46 ~~~c~~--c~~~~~~~~~l~~h~~~   68 (98)
                      ||.|.+  |++.|..++.|+.|++.
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~   26 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKT   26 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHH
T ss_pred             CeecccCCCCcccCCHHHHHHHHHh
Confidence            455544  55555555555555554

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=3.4e-05  Score=27.37  Aligned_cols=23  Identities=26%  Similarity=0.706  Sum_probs=19.1

Q ss_pred             ceecCCCCCcCCCHHHHHHHHHH
Q psy3500          18 KYTCYACDYHTLMSEDMKKHMRK   40 (98)
Q Consensus        18 ~~~c~~C~~~~~~~~~l~~h~~~   40 (98)
                      ||.|..|...|..+.+|..||.+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            57888888888888888888875

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=4.6e-05  Score=26.72  Aligned_cols=24  Identities=33%  Similarity=0.516  Sum_probs=19.3

Q ss_pred             CeecCcCcccccChHHHHHHHhhh
Q psy3500          74 PYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        74 ~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      |.+|++|..+......|+.|.|+|
T Consensus         2 pekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CccCcccccccCcHHHHHHhhccc
Confidence            567888888888888888888876

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=3.6e-05  Score=26.20  Aligned_cols=22  Identities=27%  Similarity=0.702  Sum_probs=19.3

Q ss_pred             CeecCcCcccccChHHHHHHHh
Q psy3500          74 PYICQQCRDTFSSLYLFRNHLQ   95 (98)
Q Consensus        74 ~~~C~~C~~~f~~~~~l~~H~~   95 (98)
                      ||+|..|...|-+..+|..|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            7899999999999999998863

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.58  E-value=5e-05  Score=25.84  Aligned_cols=23  Identities=30%  Similarity=0.733  Sum_probs=19.7

Q ss_pred             ceecCCCCCcCCCHHHHHHHHHH
Q psy3500          18 KYTCYACDYHTLMSEDMKKHMRK   40 (98)
Q Consensus        18 ~~~c~~C~~~~~~~~~l~~h~~~   40 (98)
                      ||+|..|+..|.++..|+.|+..
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            78899999999999999888763

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=6e-05  Score=28.92  Aligned_cols=26  Identities=31%  Similarity=0.733  Sum_probs=15.6

Q ss_pred             CCCeec--CcCcccccChHHHHHHHhhh
Q psy3500          72 DKPYIC--QQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        72 ~~~~~C--~~C~~~f~~~~~l~~H~~~h   97 (98)
                      ++||.|  +-|+..|.....|..|...|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            556666  44666666666666665544

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=4e-05  Score=30.89  Aligned_cols=25  Identities=28%  Similarity=0.562  Sum_probs=20.0

Q ss_pred             CeecCcCcccccChHHHHHHHhhhC
Q psy3500          74 PYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        74 ~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      -|.|..|++.|.....|+.|..+|+
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            4778888888888888888887774

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=5.6e-05  Score=29.42  Aligned_cols=25  Identities=32%  Similarity=0.646  Sum_probs=19.8

Q ss_pred             CCCceecCCCccccccchhHHHHHH
Q psy3500          43 GEKPYKCEYCAYSCTQSSALKIHER   67 (98)
Q Consensus        43 ~~~~~~c~~c~~~~~~~~~l~~h~~   67 (98)
                      +-+||.|..|++.|.....+.+|..
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhh
Confidence            4578888888888888888877764

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.49  E-value=5.2e-05  Score=27.55  Aligned_cols=21  Identities=33%  Similarity=0.695  Sum_probs=10.3

Q ss_pred             ceecCCCccccccchhHHHHH
Q psy3500          46 PYKCEYCAYSCTQSSALKIHE   66 (98)
Q Consensus        46 ~~~c~~c~~~~~~~~~l~~h~   66 (98)
                      ||.|.+|++.|.+...|.+|+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~   21 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHA   21 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHH
T ss_pred             CcccccccchhhHHHHHHHHH
Confidence            344555555555554444443

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.47  E-value=7.2e-05  Score=27.17  Aligned_cols=22  Identities=36%  Similarity=0.735  Sum_probs=20.4

Q ss_pred             CeecCcCcccccChHHHHHHHh
Q psy3500          74 PYICQQCRDTFSSLYLFRNHLQ   95 (98)
Q Consensus        74 ~~~C~~C~~~f~~~~~l~~H~~   95 (98)
                      ||.|..|++.|....-|.+|++
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~q   22 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQ   22 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHT
T ss_pred             CcccccccchhhHHHHHHHHHH
Confidence            7999999999999999999975

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=7.4e-05  Score=26.60  Aligned_cols=24  Identities=25%  Similarity=0.524  Sum_probs=14.9

Q ss_pred             CCeecCcCcccccChHHHHHHHhh
Q psy3500          73 KPYICQQCRDTFSSLYLFRNHLQS   96 (98)
Q Consensus        73 ~~~~C~~C~~~f~~~~~l~~H~~~   96 (98)
                      +||.|..|.......++|..|+++
T Consensus         1 kpy~cqyc~yrsadssnlkthikt   24 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CCccccccccccccchhhhhhhhc
Confidence            356666666666666666666553

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.0001  Score=26.13  Aligned_cols=23  Identities=30%  Similarity=0.673  Sum_probs=17.7

Q ss_pred             CeecCcCcccccChHHHHHHHhh
Q psy3500          74 PYICQQCRDTFSSLYLFRNHLQS   96 (98)
Q Consensus        74 ~~~C~~C~~~f~~~~~l~~H~~~   96 (98)
                      ||.|..|.-.|....+|..|++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            57788888888888888888764

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.32  E-value=0.00014  Score=25.33  Aligned_cols=22  Identities=18%  Similarity=0.475  Sum_probs=15.6

Q ss_pred             CeecCcCcccccChHHHHHHHh
Q psy3500          74 PYICQQCRDTFSSLYLFRNHLQ   95 (98)
Q Consensus        74 ~~~C~~C~~~f~~~~~l~~H~~   95 (98)
                      ||+|..||+.+..+.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            5777777777777777776653

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.15  E-value=0.00025  Score=25.09  Aligned_cols=19  Identities=32%  Similarity=0.403  Sum_probs=7.7

Q ss_pred             CccccccchhHHHHHHhhC
Q psy3500          52 CAYSCTQSSALKIHERKHT   70 (98)
Q Consensus        52 c~~~~~~~~~l~~h~~~~~   70 (98)
                      |.+.|...-.|.+|...|+
T Consensus        10 c~kgf~tlhhltrhs~tht   28 (30)
T d1tf3a2          10 CEKGFTSLHHLTRHSLTHT   28 (30)
T ss_dssp             CCCEESSTTHHHHHHHHHH
T ss_pred             ccccchhhhhhhhhhcccc
Confidence            3344444444444433333

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00036  Score=24.71  Aligned_cols=23  Identities=17%  Similarity=0.499  Sum_probs=18.8

Q ss_pred             CCeecCcCcccccChHHHHHHHh
Q psy3500          73 KPYICQQCRDTFSSLYLFRNHLQ   95 (98)
Q Consensus        73 ~~~~C~~C~~~f~~~~~l~~H~~   95 (98)
                      +||+|..|.-.-.+.++|..|++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~k   23 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMK   23 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHH
Confidence            57888888877788888888875

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00044  Score=24.07  Aligned_cols=23  Identities=17%  Similarity=0.440  Sum_probs=18.9

Q ss_pred             CeecCcCcccccChHHHHHHHhh
Q psy3500          74 PYICQQCRDTFSSLYLFRNHLQS   96 (98)
Q Consensus        74 ~~~C~~C~~~f~~~~~l~~H~~~   96 (98)
                      .|.|+.|+.....+++|..|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            37888888888888888888863

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.07  E-value=0.00034  Score=24.63  Aligned_cols=17  Identities=35%  Similarity=0.499  Sum_probs=8.5

Q ss_pred             CccccccchhHHHHHHh
Q psy3500          52 CAYSCTQSSALKIHERK   68 (98)
Q Consensus        52 c~~~~~~~~~l~~h~~~   68 (98)
                      |++.|+.++.|.+|.+.
T Consensus        11 cdk~fs~ps~lkrhekv   27 (29)
T d2j7ja2          11 CDKRFSLPSRLKRHEKV   27 (29)
T ss_dssp             CCCEESSHHHHHHHHHH
T ss_pred             ccccccCHHHHhhhhhc
Confidence            44555555555555443

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.0005  Score=26.28  Aligned_cols=26  Identities=19%  Similarity=0.433  Sum_probs=13.3

Q ss_pred             CCceec--CCCCCcCCCHHHHHHHHHHh
Q psy3500          16 SYKYTC--YACDYHTLMSEDMKKHMRKH   41 (98)
Q Consensus        16 ~~~~~c--~~C~~~~~~~~~l~~h~~~h   41 (98)
                      ++||.|  +-|+.+|.+...|..|...|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            455555  34555555555555554444

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00023  Score=25.82  Aligned_cols=26  Identities=38%  Similarity=0.787  Sum_probs=16.2

Q ss_pred             CceecCC--CccccccchhHHHHH-HhhC
Q psy3500          45 KPYKCEY--CAYSCTQSSALKIHE-RKHT   70 (98)
Q Consensus        45 ~~~~c~~--c~~~~~~~~~l~~h~-~~~~   70 (98)
                      +||.|..  |.+.|+..+....|+ +.|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            3566655  777777776666665 5443

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00028  Score=26.16  Aligned_cols=22  Identities=23%  Similarity=0.691  Sum_probs=18.1

Q ss_pred             CeecCcCcccccChHHHHHHHh
Q psy3500          74 PYICQQCRDTFSSLYLFRNHLQ   95 (98)
Q Consensus        74 ~~~C~~C~~~f~~~~~l~~H~~   95 (98)
                      .|.|.+|++.|.....+.+|..
T Consensus         4 afvcskcgktftrrntm~rha~   25 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHAD   25 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHH
T ss_pred             eeeecccccchhcchHHHHHhh
Confidence            4888889999988888888854

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00069  Score=23.97  Aligned_cols=23  Identities=30%  Similarity=0.790  Sum_probs=18.3

Q ss_pred             ceecCCCCCcCCCHHHHHHHHHH
Q psy3500          18 KYTCYACDYHTLMSEDMKKHMRK   40 (98)
Q Consensus        18 ~~~c~~C~~~~~~~~~l~~h~~~   40 (98)
                      ||+|..|+....+.++|..|++.
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CcccceecccccCcchHHHHHHH
Confidence            67888888888888888888764

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00089  Score=24.77  Aligned_cols=27  Identities=19%  Similarity=0.506  Sum_probs=22.6

Q ss_pred             ceecCCCccccccchhHHHHHHhhCCC
Q psy3500          46 PYKCEYCAYSCTQSSALKIHERKHTGD   72 (98)
Q Consensus        46 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   72 (98)
                      .|.|..|+++|.+...+.+|.....|.
T Consensus         4 afvcskcgktftrrntm~rha~nc~g~   30 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAGP   30 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCCC
Confidence            488999999999999999888776663

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00072  Score=23.66  Aligned_cols=20  Identities=35%  Similarity=0.730  Sum_probs=17.2

Q ss_pred             cCcccccChHHHHHHHhhhC
Q psy3500          79 QCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        79 ~C~~~f~~~~~l~~H~~~h~   98 (98)
                      -|++.|...+.++.|+.+|+
T Consensus         8 gC~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGGS
T ss_pred             cHHHHhhchHHHHHHhhccC
Confidence            38889999999999998885

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.0023  Score=22.24  Aligned_cols=25  Identities=56%  Similarity=1.131  Sum_probs=17.0

Q ss_pred             ceecCCCccccccchhHHHHHHhhC
Q psy3500          46 PYKCEYCAYSCTQSSALKIHERKHT   70 (98)
Q Consensus        46 ~~~c~~c~~~~~~~~~l~~h~~~~~   70 (98)
                      |-.|+.|....++...|..|.++|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4467777777777777777776653

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.26  E-value=0.0019  Score=22.26  Aligned_cols=21  Identities=24%  Similarity=0.441  Sum_probs=17.0

Q ss_pred             CcCcccccChHHHHHHHhhhC
Q psy3500          78 QQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        78 ~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      ..|++.|....+|..|+-+|+
T Consensus         7 e~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           7 ENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             TTCCCEESSHHHHHHHHHHHH
T ss_pred             cCchHHHhhccceEEEeeccc
Confidence            458899999999999887663

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0018  Score=24.11  Aligned_cols=16  Identities=38%  Similarity=0.453  Sum_probs=8.3

Q ss_pred             CCCHHHHHHHHHHhcC
Q psy3500          28 TLMSEDMKKHMRKHTG   43 (98)
Q Consensus        28 ~~~~~~l~~h~~~h~~   43 (98)
                      |.....|..|+++|++
T Consensus        17 f~a~YkLv~H~R~HTg   32 (33)
T d2glia2          17 FKAQYMLVVHMRRHTG   32 (33)
T ss_dssp             CSSHHHHHHHTHHHHC
T ss_pred             chhHHHHHHHHhhcCC
Confidence            4444555555555544

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.09  E-value=0.0048  Score=20.84  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=13.2

Q ss_pred             eecCcCcccccChHHHHHHHhh
Q psy3500          75 YICQQCRDTFSSLYLFRNHLQS   96 (98)
Q Consensus        75 ~~C~~C~~~f~~~~~l~~H~~~   96 (98)
                      |.|+.|-+.|....++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            4566666666666666666543

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.09  E-value=0.0057  Score=24.40  Aligned_cols=24  Identities=33%  Similarity=0.528  Sum_probs=12.6

Q ss_pred             CCceecCCCccccccchhHHHHHH
Q psy3500          44 EKPYKCEYCAYSCTQSSALKIHER   67 (98)
Q Consensus        44 ~~~~~c~~c~~~~~~~~~l~~h~~   67 (98)
                      ++|..|+.|+.....+.+|.+|..
T Consensus        22 ~qpatcpic~avirqsrnlrrhle   45 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLE   45 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHH
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHH
Confidence            345555555555555555555543

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.04  E-value=0.0023  Score=23.38  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=18.2

Q ss_pred             CeecCcCcccccChHHHHHHHh
Q psy3500          74 PYICQQCRDTFSSLYLFRNHLQ   95 (98)
Q Consensus        74 ~~~C~~C~~~f~~~~~l~~H~~   95 (98)
                      .|.|..||-.|...+.|..|+.
T Consensus         8 rf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ceeccccceeecChhHHHhhhh
Confidence            4788888888888888888874

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0029  Score=25.34  Aligned_cols=25  Identities=28%  Similarity=0.542  Sum_probs=20.0

Q ss_pred             ceecCCCccccccchhHHHHHHhhC
Q psy3500          46 PYKCEYCAYSCTQSSALKIHERKHT   70 (98)
Q Consensus        46 ~~~c~~c~~~~~~~~~l~~h~~~~~   70 (98)
                      -+.|..|++.|.....|++|...|-
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            4678889999988888888877653

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.005  Score=22.89  Aligned_cols=20  Identities=30%  Similarity=0.479  Sum_probs=17.0

Q ss_pred             ccccccchhHHHHHHhhCCC
Q psy3500          53 AYSCTQSSALKIHERKHTGD   72 (98)
Q Consensus        53 ~~~~~~~~~l~~h~~~~~~~   72 (98)
                      ++.|.....|..|++.|+||
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            45678888999999999986

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.80  E-value=0.0016  Score=25.07  Aligned_cols=22  Identities=23%  Similarity=0.498  Sum_probs=10.6

Q ss_pred             CCCCCCCCccCCCCCCceecCCCC
Q psy3500           2 YHCKTCSTLSRPNISYKYTCYACD   25 (98)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~c~~C~   25 (98)
                      |+|..||-...  ++.|-.|++|+
T Consensus         6 ~~C~vCG~i~~--g~~P~~CPvCg   27 (37)
T d1nnqa2           6 YICPICGYTAV--DEAPEYCPVCG   27 (37)
T ss_dssp             EECTTTCCEEE--SCCCSBCTTTC
T ss_pred             EECCCCCCEec--CCCCCcCCCCC
Confidence            44555554433  23444555554

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0025  Score=27.88  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=17.2

Q ss_pred             CeecCcCcccccChHHHHHHHhh
Q psy3500          74 PYICQQCRDTFSSLYLFRNHLQS   96 (98)
Q Consensus        74 ~~~C~~C~~~f~~~~~l~~H~~~   96 (98)
                      .|.|..|++.|.....|..|+++
T Consensus        15 qfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTC
T ss_pred             EEecccccCccCCHHHHHHHHcc
Confidence            37788888888888888777653

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.59  E-value=0.0049  Score=22.78  Aligned_cols=25  Identities=16%  Similarity=0.272  Sum_probs=16.5

Q ss_pred             CCCceecCCCCCcCCCHHHHHHHHH
Q psy3500          15 ISYKYTCYACDYHTLMSEDMKKHMR   39 (98)
Q Consensus        15 ~~~~~~c~~C~~~~~~~~~l~~h~~   39 (98)
                      ++--|.|..|.+.+...+++.+|..
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyv   29 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYV   29 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHH
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHH
Confidence            4445677777777777777666654

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.06  E-value=0.02  Score=22.75  Aligned_cols=26  Identities=23%  Similarity=0.499  Sum_probs=22.9

Q ss_pred             CCCCeecCcCcccccChHHHHHHHhh
Q psy3500          71 GDKPYICQQCRDTFSSLYLFRNHLQS   96 (98)
Q Consensus        71 ~~~~~~C~~C~~~f~~~~~l~~H~~~   96 (98)
                      .+.|-.|+.|+....++.+|++|+..
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999753

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.018  Score=24.63  Aligned_cols=38  Identities=13%  Similarity=0.350  Sum_probs=21.3

Q ss_pred             CCceecCCCCCcCCCHHHHHHHHHHhcCCCceecCCCcccc
Q psy3500          16 SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSC   56 (98)
Q Consensus        16 ~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~c~~c~~~~   56 (98)
                      ...|.|+.|++.|.....   -+........|.|..|+...
T Consensus        12 ~~~y~Cp~C~~~ys~Lda---~~L~d~~~~~F~C~~C~~el   49 (62)
T d1vd4a_          12 RASFKCPVCSSTFTDLEA---NQLFDPMTGTFRCTFCHTEV   49 (62)
T ss_dssp             SSEEECSSSCCEEEHHHH---HHHEETTTTEEBCSSSCCBC
T ss_pred             CCceECCCCCCCcchhhH---HHhcCcCCCeEEecCCCCEE
Confidence            456777777777754333   22333344457777776543

>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF0610-like
domain: Hypothetical protein PF0610
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.34  E-value=0.022  Score=26.91  Aligned_cols=21  Identities=24%  Similarity=0.760  Sum_probs=9.5

Q ss_pred             CCCCCCccCCCCCCceecCCC
Q psy3500           4 CKTCSTLSRPNISYKYTCYAC   24 (98)
Q Consensus         4 c~~c~~~~~~~~~~~~~c~~C   24 (98)
                      |.-||--|+....+|-+|+.|
T Consensus        70 CrkCGfvFr~~~kkPSRCP~C   90 (105)
T d2gmga1          70 CRKCGFVFKAEINIPSRCPKC   90 (105)
T ss_dssp             BTTTCCBCCCCSSCCSSCSSS
T ss_pred             hhhcCCeecccCCCCCCCCCC
Confidence            444444444333444444444

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.037  Score=19.32  Aligned_cols=21  Identities=29%  Similarity=0.496  Sum_probs=9.7

Q ss_pred             eecCCCCCcCCCHHHHHHHHH
Q psy3500          19 YTCYACDYHTLMSEDMKKHMR   39 (98)
Q Consensus        19 ~~c~~C~~~~~~~~~l~~h~~   39 (98)
                      |.|..|++...+...++-|..
T Consensus         3 ftc~hcgkqlks~~gmkyhvm   23 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVM   23 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHH
T ss_pred             eechhHHHHHhhccCceEEEe
Confidence            344444444444444444443

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.041  Score=23.47  Aligned_cols=26  Identities=27%  Similarity=0.641  Sum_probs=20.1

Q ss_pred             CCCeecCcCcccccChHHHHHHHhhh
Q psy3500          72 DKPYICQQCRDTFSSLYLFRNHLQSH   97 (98)
Q Consensus        72 ~~~~~C~~C~~~f~~~~~l~~H~~~h   97 (98)
                      ...|.|..|...|.....|..|+..|
T Consensus        16 s~~yQC~HCd~K~~s~~el~~hl~~h   41 (75)
T d1x6fa1          16 NSTYQCKHCDSKLQSTAELTSHLNIH   41 (75)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CceeeechhHHHHhhHHHHHHHHHhc
Confidence            34688888888888888888887665

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=93.49  E-value=0.014  Score=22.15  Aligned_cols=9  Identities=33%  Similarity=0.619  Sum_probs=4.4

Q ss_pred             CceecCCCc
Q psy3500          45 KPYKCEYCA   53 (98)
Q Consensus        45 ~~~~c~~c~   53 (98)
                      .|-.|++|+
T Consensus        19 ~Pe~CPvCg   27 (36)
T d1yuza2          19 DFEKCPICF   27 (36)
T ss_dssp             CCSBCTTTC
T ss_pred             CCCcCCCCC
Confidence            344455554

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.23  E-value=0.013  Score=25.55  Aligned_cols=21  Identities=38%  Similarity=0.532  Sum_probs=13.0

Q ss_pred             eecCCCccccccchhHHHHHH
Q psy3500          47 YKCEYCAYSCTQSSALKIHER   67 (98)
Q Consensus        47 ~~c~~c~~~~~~~~~l~~h~~   67 (98)
                      |.|..|++.|.+...|..|.+
T Consensus        16 fYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHTT
T ss_pred             EecccccCccCCHHHHHHHHc
Confidence            556666666666666666653

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.61  E-value=0.029  Score=23.96  Aligned_cols=27  Identities=22%  Similarity=0.557  Sum_probs=23.7

Q ss_pred             CceecCCCCCcCCCHHHHHHHHHHhcC
Q psy3500          17 YKYTCYACDYHTLMSEDMKKHMRKHTG   43 (98)
Q Consensus        17 ~~~~c~~C~~~~~~~~~l~~h~~~h~~   43 (98)
                      .-|.|..|+..|.....|..|...|..
T Consensus        17 ~~yQC~HCd~K~~s~~el~~hl~~hne   43 (75)
T d1x6fa1          17 STYQCKHCDSKLQSTAELTSHLNIHNE   43 (75)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             ceeeechhHHHHhhHHHHHHHHHhccH
Confidence            459999999999999999999988754

>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: RNA polymerase subunits
family: RBP12 subunit of RNA polymerase II
domain: RBP12 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.78  E-value=0.053  Score=21.57  Aligned_cols=27  Identities=22%  Similarity=0.484  Sum_probs=13.4

Q ss_pred             CCCCCCCCccCCCCCCceecCCCCCcC
Q psy3500           2 YHCKTCSTLSRPNISYKYTCYACDYHT   28 (98)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~c~~C~~~~   28 (98)
                      |.|-+||..+.-...-+-.|.+||...
T Consensus         5 YiCgeCg~~~~l~~~d~irCreCG~RI   31 (46)
T d1twfl_           5 YICAECSSKLSLSRTDAVRCKDCGHRI   31 (46)
T ss_dssp             EECSSSCCEECCCTTSTTCCSSSCCCC
T ss_pred             EEcccCCCceEeCCCCcEEeccCCcEE
Confidence            455555554443333344566666443

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=91.55  E-value=0.11  Score=18.36  Aligned_cols=20  Identities=35%  Similarity=0.594  Sum_probs=9.0

Q ss_pred             CccccccchhHHHHHHhhCC
Q psy3500          52 CAYSCTQSSALKIHERKHTG   71 (98)
Q Consensus        52 c~~~~~~~~~l~~h~~~~~~   71 (98)
                      |+..|.....|..|+-.|+|
T Consensus        11 C~A~ynk~wkL~AHLckHTG   30 (31)
T d1tf3a1          11 CGAAYNKNWKLQAHLSKHTG   30 (31)
T ss_dssp             GCCEESSHHHHHHHHHHHHC
T ss_pred             cchhhccchhhhHHhhhhcC
Confidence            44444444444444444443

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=90.88  E-value=0.048  Score=28.06  Aligned_cols=38  Identities=29%  Similarity=0.663  Sum_probs=24.9

Q ss_pred             hhHHHHHHhh--CCCC-----CeecCcCcccccChHHHHHHHhhhC
Q psy3500          60 SALKIHERKH--TGDK-----PYICQQCRDTFSSLYLFRNHLQSHG   98 (98)
Q Consensus        60 ~~l~~h~~~~--~~~~-----~~~C~~C~~~f~~~~~l~~H~~~h~   98 (98)
                      ..|..|++..  .|..     =|+|..||+ +..-.+|.+|++.|+
T Consensus       125 grlieHiK~~m~~GqDyvFWQFYKCe~CgK-YvDie~~~~H~k~HG  169 (218)
T d2czra1         125 AALVNHIKNNALAGQDYIFWQFYKCEECGK-YVDIENLEAHLREHG  169 (218)
T ss_dssp             HHHHHHHHTTCCBTTTEEEEEEEECTTTCC-EEEGGGHHHHHHTTT
T ss_pred             HHHHHHHHhccccCcceEEEEEeehhhcCc-eecHHHHHHHHHHcC
Confidence            4466676643  2321     368999986 556667888888875

>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcriptional factor SII, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.69  E-value=0.15  Score=20.64  Aligned_cols=28  Identities=14%  Similarity=0.400  Sum_probs=16.5

Q ss_pred             CCCCCCCCcc-------CCCCCC----ceecCCCCCcCC
Q psy3500           2 YHCKTCSTLS-------RPNISY----KYTCYACDYHTL   29 (98)
Q Consensus         2 ~~c~~c~~~~-------~~~~~~----~~~c~~C~~~~~   29 (98)
                      |+|+.||...       ..+++.    -|.|..|+..+.
T Consensus        10 ~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~Wr   48 (50)
T d1tfia_          10 FTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK   48 (50)
T ss_dssp             SCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred             EECCCCCCCccEEEEEEccCCCCCceEEEEccccCCeee
Confidence            6788888532       133333    377888876653

>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Clostridium pasteurianum [TaxId: 1501]

Probab=88.81  E-value=0.095  Score=21.57  Aligned_cols=10  Identities=30%  Similarity=0.999  Sum_probs=5.0

Q ss_pred             CCCCCCCCcc
Q psy3500           2 YHCKTCSTLS   11 (98)
Q Consensus         2 ~~c~~c~~~~   11 (98)
                      |+|..||.-+
T Consensus         4 y~C~~CgyiY   13 (53)
T d1iroa_           4 YTCTVCGYIY   13 (53)
T ss_dssp             EEETTTCCEE
T ss_pred             eEcCCCCcEE
Confidence            4555555433

>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: PhnA zinc-binding domain
domain: Hypothetical protein PA0128, N-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.89  E-value=0.21  Score=18.95  Aligned_cols=25  Identities=16%  Similarity=0.325  Sum_probs=13.8

Q ss_pred             CCCCCCccCCCCCCceecCCCCCcC
Q psy3500           4 CKTCSTLSRPNISYKYTCYACDYHT   28 (98)
Q Consensus         4 c~~c~~~~~~~~~~~~~c~~C~~~~   28 (98)
                      |+.|+..+.=...-.+.|++|+.-+
T Consensus         6 CP~C~seytYedg~l~vCPeC~hEW   30 (38)
T d2akla2           6 CPQCNSEYTYEDGALLVCPECAHEW   30 (38)
T ss_dssp             CTTTCCCCCEECSSSEEETTTTEEE
T ss_pred             CCCCCCcceEcCCCEEECCcccCcC
Confidence            5555555554444456666666443

>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.79  E-value=0.092  Score=21.61  Aligned_cols=10  Identities=30%  Similarity=0.903  Sum_probs=5.7

Q ss_pred             CCCCCCCCcc
Q psy3500           2 YHCKTCSTLS   11 (98)
Q Consensus         2 ~~c~~c~~~~   11 (98)
                      |+|..||.-+
T Consensus         3 y~C~~CgyiY   12 (53)
T d1brfa_           3 WVCKICGYIY   12 (53)
T ss_dssp             EEETTTCCEE
T ss_pred             eECCCCCcEE
Confidence            5566666443

>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio gigas [TaxId: 879]

Probab=87.78  E-value=0.12  Score=21.14  Aligned_cols=10  Identities=30%  Similarity=0.756  Sum_probs=5.8

Q ss_pred             CCCCCCCCcc
Q psy3500           2 YHCKTCSTLS   11 (98)
Q Consensus         2 ~~c~~c~~~~   11 (98)
                      |+|..||.-+
T Consensus         4 y~C~~CgyiY   13 (52)
T d2dsxa1           4 YVCTVCGYEY   13 (52)
T ss_dssp             EEETTTCCEE
T ss_pred             EEeCCCCeEE
Confidence            5666666544

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=86.89  E-value=0.19  Score=19.86  Aligned_cols=12  Identities=33%  Similarity=1.018  Sum_probs=7.2

Q ss_pred             eecCCCcccccc
Q psy3500          47 YKCEYCAYSCTQ   58 (98)
Q Consensus        47 ~~c~~c~~~~~~   58 (98)
                      +.|..|+..|..
T Consensus         4 y~C~~CgyiYd~   15 (45)
T d6rxna_           4 YVCNVCGYEYDP   15 (45)
T ss_dssp             EEETTTCCEECG
T ss_pred             eEeCCCCeEECc
Confidence            566666665544

>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Rififylin (FYVE-RING finger protein Sakura)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.69  E-value=0.24  Score=20.04  Aligned_cols=27  Identities=30%  Similarity=0.613  Sum_probs=16.2

Q ss_pred             CCCCCCccCCCCCCceecCCCCCcCCCH
Q psy3500           4 CKTCSTLSRPNISYKYTCYACDYHTLMS   31 (98)
Q Consensus         4 c~~c~~~~~~~~~~~~~c~~C~~~~~~~   31 (98)
                      |..|+..|.- ....+.|..||..|-..
T Consensus         3 C~~C~~~F~~-~~rkhhCr~CG~~fC~~   29 (51)
T d1y02a2           3 CKSCGAHFAN-TARKQTCLDCKKNFCMT   29 (51)
T ss_dssp             CTTTCCCCSS-GGGCEECTTTCCEECGG
T ss_pred             ccccCCcccC-CccCcccccCCcccCcc
Confidence            6667776653 33446677777666443

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.68  E-value=0.25  Score=18.21  Aligned_cols=22  Identities=27%  Similarity=0.326  Sum_probs=15.7

Q ss_pred             ceecCCCCCcCCCHHHHHHHHH
Q psy3500          18 KYTCYACDYHTLMSEDMKKHMR   39 (98)
Q Consensus        18 ~~~c~~C~~~~~~~~~l~~h~~   39 (98)
                      ...|.+|-++|...-.+.+|+.
T Consensus         3 kltclecmrtfkssfsiwrhqv   24 (41)
T d1wjpa3           3 KLTCLECMRTFKSSFSIWRHQV   24 (41)
T ss_dssp             GGEEGGGTEECSSHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHhhh
Confidence            4567777777777777777765

>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Effector domain of rabphilin-3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.64  E-value=0.34  Score=23.37  Aligned_cols=27  Identities=19%  Similarity=0.285  Sum_probs=15.4

Q ss_pred             CCCCCCCccCCCCCCceecCCCCCcCC
Q psy3500           3 HCKTCSTLSRPNISYKYTCYACDYHTL   29 (98)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~c~~C~~~~~   29 (98)
                      .|..|++.|.........|..|+..+-
T Consensus        50 ~C~~C~~~f~~~~~~~~~C~~C~~~~C   76 (124)
T d1zbdb_          50 RCILCGEQLGMLGSASVVCEDCKKNVC   76 (124)
T ss_dssp             BCSSSCCBCSTTSCCEEECTTTCCEEE
T ss_pred             cCcccCCcccCCCCCCCcCccCCcccc
Confidence            466666666554444555666665543

>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.50  E-value=0.2  Score=19.06  Aligned_cols=26  Identities=0%  Similarity=-0.312  Sum_probs=12.9

Q ss_pred             CCCCCCCCccCCC---CCCceecCCCCCc
Q psy3500           2 YHCKTCSTLSRPN---ISYKYTCYACDYH   27 (98)
Q Consensus         2 ~~c~~c~~~~~~~---~~~~~~c~~C~~~   27 (98)
                      ..|+.||+.++-.   .+..-.|..|+..
T Consensus         3 r~C~~cG~~Yh~~~~ppk~~g~CD~cg~~   31 (38)
T d1akya2           3 LIHPASGRSYHKIFNPPKEDMKDDVTGEA   31 (38)
T ss_dssp             EECTTTCCEEETTTBCCSSTTBCTTTCCB
T ss_pred             cCCcCccchhhhhccCcCcCCccCCCCCE
Confidence            3567777655422   2233445555543

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.49  E-value=0.41  Score=16.49  Aligned_cols=18  Identities=22%  Similarity=0.436  Sum_probs=11.8

Q ss_pred             CcCcccccChHHHHHHHh
Q psy3500          78 QQCRDTFSSLYLFRNHLQ   95 (98)
Q Consensus        78 ~~C~~~f~~~~~l~~H~~   95 (98)
                      +-||+.|....-|..|.+
T Consensus         6 ~gc~kifsnrqylnhh~k   23 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKK   23 (30)
T ss_dssp             TTTCCEESSHHHHHHHHH
T ss_pred             CCchhhhccHHHHHhHHH
Confidence            457777777776666653

>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Zinc finger FYVE domain containing protein 19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.85  E-value=0.43  Score=21.62  Aligned_cols=28  Identities=18%  Similarity=0.401  Sum_probs=18.5

Q ss_pred             CCCCCCCccCCCCCCceecCCCCCcCCCH
Q psy3500           3 HCKTCSTLSRPNISYKYTCYACDYHTLMS   31 (98)
Q Consensus         3 ~c~~c~~~~~~~~~~~~~c~~C~~~~~~~   31 (98)
                      +|..|++.|.- ...++.|..||..|-..
T Consensus        11 ~C~~C~~~Fs~-~~rrhhCr~CG~vfC~~   38 (88)
T d1wfka_          11 RCYGCAVKFTL-FKKEYGCKNCGRAFCNG   38 (88)
T ss_dssp             BCTTTCCBCCS-SSCEEECSSSCCEEETT
T ss_pred             cCcccCchhcc-ccccccccccChhhChH
Confidence            57778877753 34467787777776543

>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Guillardia theta [TaxId: 55529]

Probab=84.64  E-value=0.21  Score=21.75  Aligned_cols=8  Identities=25%  Similarity=0.895  Sum_probs=5.0

Q ss_pred             eecCCCcc
Q psy3500          47 YKCEYCAY   54 (98)
Q Consensus        47 ~~c~~c~~   54 (98)
                      +.|++|+.
T Consensus        41 W~CP~Cga   48 (70)
T d1dx8a_          41 FMCPACRS   48 (70)
T ss_dssp             CBCTTTCC
T ss_pred             CCCcCCCC
Confidence            56666664

>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Two-iron rubredoxin
species: Pseudomonas oleovorans [TaxId: 301]

Probab=84.27  E-value=0.12  Score=21.50  Aligned_cols=8  Identities=25%  Similarity=0.804  Sum_probs=4.5

Q ss_pred             eecCCCcc
Q psy3500          47 YKCEYCAY   54 (98)
Q Consensus        47 ~~c~~c~~   54 (98)
                      +.|++|+.
T Consensus        38 w~CP~C~a   45 (56)
T d1s24a_          38 WCCPDCGA   45 (56)
T ss_dssp             CCCSSSCC
T ss_pred             CCCcCCCC
Confidence            55666653

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.78  E-value=0.65  Score=21.08  Aligned_cols=23  Identities=30%  Similarity=0.992  Sum_probs=12.4

Q ss_pred             CCCCCCCCccCCCCCCceecCCCCCc
Q psy3500           2 YHCKTCSTLSRPNISYKYTCYACDYH   27 (98)
Q Consensus         2 ~~c~~c~~~~~~~~~~~~~c~~C~~~   27 (98)
                      |.|+.|++..   ....|.|..|+..
T Consensus        48 ~~C~~C~~~~---~g~~Y~C~~C~f~   70 (89)
T d1v5na_          48 YTCDKCEEEG---TIWSYHCDECDFD   70 (89)
T ss_dssp             CCCTTTSCCC---CSCEEECTTTCCC
T ss_pred             CEeCCCCCCc---CCcEeEeccCCCE
Confidence            4566665432   2345666666543

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=83.20  E-value=0.14  Score=19.37  Aligned_cols=10  Identities=0%  Similarity=-0.027  Sum_probs=5.2

Q ss_pred             CCCCCCCCcc
Q psy3500           2 YHCKTCSTLS   11 (98)
Q Consensus         2 ~~c~~c~~~~   11 (98)
                      +.|+.||..+
T Consensus         3 ~vc~~cG~~Y   12 (37)
T d2ak3a2           3 WIHPGSGRVY   12 (37)
T ss_dssp             EEETTTTEEE
T ss_pred             eeeCCcCChh
Confidence            3455666544

>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
domain: DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.48  E-value=0.49  Score=17.44  Aligned_cols=13  Identities=15%  Similarity=0.376  Sum_probs=7.5

Q ss_pred             CCCCCCCccCCCC
Q psy3500           3 HCKTCSTLSRPNI   15 (98)
Q Consensus         3 ~c~~c~~~~~~~~   15 (98)
                      +|.+||+.|-.+.
T Consensus         7 ~C~eCg~~F~DSY   19 (36)
T d1d4ua2           7 ICEECGKEFMDSY   19 (36)
T ss_dssp             ECTTTCCEESCSS
T ss_pred             HHHHhCcHHHHHH
Confidence            4666666665443

>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: vps27p protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.16  E-value=0.54  Score=20.02  Aligned_cols=25  Identities=24%  Similarity=0.417  Sum_probs=11.2

Q ss_pred             CCCCCCccCCCCCCceecCCCCCcCC
Q psy3500           4 CKTCSTLSRPNISYKYTCYACDYHTL   29 (98)
Q Consensus         4 c~~c~~~~~~~~~~~~~c~~C~~~~~   29 (98)
                      |..|++.|.- ...++.|..||..|-
T Consensus         8 C~~C~~~F~~-~~rkhhCr~CG~~fC   32 (67)
T d1vfya_           8 CMICSKKFSL-LNRKHHCRSCGGVFC   32 (67)
T ss_dssp             CTTTCCBCBT-TBCCEECTTTCCEEC
T ss_pred             cccCCCcccC-cccccccccCCCEec
Confidence            4445554432 223344555554443

>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=81.50  E-value=0.71  Score=19.96  Aligned_cols=10  Identities=20%  Similarity=0.524  Sum_probs=5.3

Q ss_pred             ecCCCCCcCC
Q psy3500          20 TCYACDYHTL   29 (98)
Q Consensus        20 ~c~~C~~~~~   29 (98)
                      .|..|+..|.
T Consensus        15 ~C~~C~~~F~   24 (72)
T d1dvpa2          15 VCHRCRVEFT   24 (72)
T ss_dssp             BCTTTCCBCC
T ss_pred             ccccCCCccc
Confidence            3555555553

>d1dxga_ g.41.5.2 (A:) Desulforedoxin {Desulfovibrio gigas [TaxId: 879]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Desulforedoxin
domain: Desulforedoxin
species: Desulfovibrio gigas [TaxId: 879]

Probab=80.85  E-value=0.19  Score=18.74  Aligned_cols=8  Identities=38%  Similarity=1.319  Sum_probs=5.1

Q ss_pred             CCCCCCCC
Q psy3500           2 YHCKTCST    9 (98)
Q Consensus         2 ~~c~~c~~    9 (98)
                      |+|+.||-
T Consensus         7 YkC~~CGN   14 (36)
T d1dxga_           7 YKCELCGQ   14 (36)
T ss_dssp             EECTTTCC
T ss_pred             EEeccCCc
Confidence            56777763

>d1dfxa2 g.41.5.2 (A:1-36) Desulfoferrodoxin N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Desulforedoxin
domain: Desulfoferrodoxin N-terminal domain
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=80.20  E-value=0.2  Score=18.66  Aligned_cols=8  Identities=38%  Similarity=1.335  Sum_probs=5.2

Q ss_pred             CCCCCCCC
Q psy3500           2 YHCKTCST    9 (98)
Q Consensus         2 ~~c~~c~~    9 (98)
                      |+|+.||-
T Consensus         7 YkC~~CGN   14 (36)
T d1dfxa2           7 YKCTHCGN   14 (36)
T ss_dssp             EECTTTCC
T ss_pred             EEecccCc
Confidence            56777773