Psyllid ID: psy3510

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60----
Protein Sequence
MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ
Secondary Structure (PSIPRED)
cEEcccccHHEEcccccccccccccccccccEEEEEEEcccccccccccEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEcccHHHHHHHccccccccccEEccccEEEEEEEEcccccccccccEEEEEcccccccccc
Coil and Loop (DISEMBL)
maaginpvetyirsgqypnlpdlpailgtevsGIVEEvgqgvkhfkvgdkvfgkpilgkggysq
Flexible Loop (DISEMBL)
MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQgvkhfkvgdkvfgkpilgkggysq
Low Complexity Region (SEG)
MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ
Disordered region (IsUnstruct)
*******VETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL*******
Disordered Region (DISOPRED)
MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYS*
Disordered Region (DISEMBL)
MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ
Disordered Region (DISPRO)
MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGK*GY**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	64	2.2.26 [Sep-21-2011]
P11415	329	Quinone oxidoreductase OS	yes	N/A	0.968	0.188	0.539	7e-12
Q6AYT0	329	Quinone oxidoreductase OS	yes	N/A	0.968	0.188	0.539	2e-11
P47199	331	Quinone oxidoreductase OS	yes	N/A	0.968	0.187	0.523	1e-10
Q08257	329	Quinone oxidoreductase OS	no	N/A	0.968	0.188	0.492	3e-10
Q28452	330	Quinone oxidoreductase OS	N/A	N/A	0.968	0.187	0.492	3e-10
P28304	327	Quinone oxidoreductase 1	N/A	N/A	0.875	0.171	0.586	5e-10
P40783	327	Quinone oxidoreductase OS	yes	N/A	0.875	0.171	0.568	5e-10
Q5R4S7	329	Quinone oxidoreductase OS	yes	N/A	0.968	0.188	0.492	7e-10
Q0MVN8	329	Quinone oxidoreductase OS	yes	N/A	0.968	0.188	0.523	1e-09
O97764	330	Zeta-crystallin OS=Bos ta	yes	N/A	0.968	0.187	0.492	4e-09

>sp|P11415|QOR_CAVPO Quinone oxidoreductase OS=Cavia porcellus GN=CRYZ PE=1 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
           A GINPVETYIRSG Y  +P LP   GT+V+G+VE +G  V  FK GD+VF    +  GG
Sbjct: 44  ACGINPVETYIRSGTYTRIPLLPYTPGTDVAGVVESIGNDVSAFKKGDRVFTTSTI-SGG 102

Query: 62  YSQ 64
           Y++
Sbjct: 103 YAE 105

Does not have alcohol dehydrogenase activity. Binds NADP and acts through a one-electron transfer process. Orthoquinones, such as 1,2-naphthoquinone or 9,10-phenanthrenequinone, are the best substrates (in vitro). May act in the detoxification of xenobiotics. Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding.
Cavia porcellus (taxid: 10141)
EC: 1EC: .EC: 6EC: .EC: 5EC: .EC: 5

>sp|Q6AYT0|QOR_RAT Quinone oxidoreductase OS=Rattus norvegicus GN=Cryz PE=2 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
           A G+NPVETYIRSG Y   P LP   G++V+GI+E VG GV  FK GD+VF    +  GG
Sbjct: 44  ACGVNPVETYIRSGTYSRKPALPYTPGSDVAGIIESVGDGVSAFKKGDRVFCFSTV-SGG 102

Query: 62  YSQ 64
           Y++
Sbjct: 103 YAE 105

Does not have alcohol dehydrogenase activity. Binds NADP and acts through a one-electron transfer process. Orthoquinones, such as 1,2-naphthoquinone or 9,10-phenanthrenequinone, are the best substrates (in vitro). May act in the detoxification of xenobiotics. Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|P47199|QOR_MOUSE Quinone oxidoreductase OS=Mus musculus GN=Cryz PE=2 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
           A G+NPVETYIRSG Y   P LP   G++V+GI+E VG  V  FK GD+VF    +  GG
Sbjct: 44  ACGVNPVETYIRSGAYSRKPALPYTPGSDVAGIIESVGDKVSAFKKGDRVFCYSTV-SGG 102

Query: 62  YSQ 64
           Y++
Sbjct: 103 YAE 105

Does not have alcohol dehydrogenase activity. Binds NADP and acts through a one-electron transfer process. Orthoquinones, such as 1,2-naphthoquinone or 9,10-phenanthrenequinone, are the best substrates (in vitro). May act in the detoxification of xenobiotics. Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|Q08257|QOR_HUMAN Quinone oxidoreductase OS=Homo sapiens GN=CRYZ PE=1 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
           A G+NPVETYIRSG Y   P LP   G++V+G++E VG     FK GD+VF    +  GG
Sbjct: 44  ACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTI-SGG 102

Query: 62  YSQ 64
           Y++
Sbjct: 103 YAE 105

Does not have alcohol dehydrogenase activity. Binds NADP and acts through a one-electron transfer process. Orthoquinones, such as 1,2-naphthoquinone or 9,10-phenanthrenequinone, are the best substrates (in vitro). May act in the detoxification of xenobiotics. Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species. Enhances the stability of mRNA coding for BCL2. NADPH binding interferes with mRNA binding.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|Q28452|QOR_LAMGU Quinone oxidoreductase OS=Lama guanicoe GN=CRYZ PE=2 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
           A G+NPV+TYIRSG Y   P LP   G +V+G++E VG+ V  FK GD+VF    +  GG
Sbjct: 44  ACGVNPVDTYIRSGTYSRKPRLPYTPGLDVAGLIEAVGERVSAFKKGDRVFTTSTV-SGG 102

Query: 62  YSQ 64
           Y++
Sbjct: 103 YAE 105

Does not have alcohol dehydrogenase activity. Binds NADP and acts through a one-electron transfer process. Orthoquinones, such as 1,2-naphthoquinone or 9,10-phenanthrenequinone, are the best substrates (in vitro). May act in the detoxification of xenobiotics. Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding.

Lama guanicoe (taxid: 9840)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|P28304|QOR1_ECOLI Quinone oxidoreductase 1 OS=Escherichia coli (strain K12) GN=qorA PE=1 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 42/58 (72%), Gaps = 2/58 (3%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDK-VFGKPILG 58
          A GIN ++TYIRSG YP  P LP+ LGTE +GIV +VG GVKH K GD+ V+ +  LG
Sbjct: 37 AIGINFIDTYIRSGLYPP-PSLPSGLGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALG 93

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|P40783|QOR_SALTY Quinone oxidoreductase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=qor PE=3 SV=2

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 43/58 (74%), Gaps = 2/58 (3%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDK-VFGKPILG 58
          A GIN ++TYIRSG YP  P LPA LGTE +G+V +VG GV+H +VGD+ V+ +  LG
Sbjct: 37 AIGINFIDTYIRSGLYPP-PSLPAGLGTEAAGVVSKVGNGVEHIRVGDRVVYAQSTLG 93

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|Q5R4S7|QOR_PONAB Quinone oxidoreductase OS=Pongo abelii GN=CRYZ PE=2 SV=1

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
           A G+NPVETYIRSG Y   P LP   G++V+G++E VG     FK GD+VF    +  GG
Sbjct: 44  ACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGGNASAFKKGDRVFTSSTI-SGG 102

Query: 62  YSQ 64
           Y++
Sbjct: 103 YAE 105

Does not have alcohol dehydrogenase activity. Binds NADP and acts through a one-electron transfer process. Orthoquinones, such as 1,2-naphthoquinone or 9,10-phenanthrenequinone, are the best substrates (in vitro). May act in the detoxification of xenobiotics. Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|Q0MVN8|QOR_PIG Quinone oxidoreductase OS=Sus scrofa GN=CRYZ PE=2 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
           A G+NPV+TYIRSG +   P LP   G +V+GIVE VG+ V  FK GD+VF    L  GG
Sbjct: 44  ACGVNPVDTYIRSGTHNMKPLLPYTPGLDVAGIVEAVGEHVSSFKKGDRVFTVSTL-SGG 102

Query: 62  YSQ 64
           Y++
Sbjct: 103 YAE 105

Does not have alcohol dehydrogenase activity. Binds NADP and acts through a one-electron transfer process. Orthoquinones, such as 1,2-naphthoquinone or 9,10-phenanthrenequinone, are the best substrates (in vitro). May act in the detoxification of xenobiotics. Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|O97764|QOR_BOVIN Zeta-crystallin OS=Bos taurus GN=CRYZ PE=2 SV=2

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
           A G+NPV+TYIRSG +   P LP   G +V+GI+E VG+ V  FK GD+VF    +  GG
Sbjct: 44  ACGVNPVDTYIRSGTHNIKPLLPYTPGFDVAGIIEAVGESVSAFKKGDRVFTTRTIS-GG 102

Query: 62  YSQ 64
           Y++
Sbjct: 103 YAE 105

Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding (By similarity). Has minimal or no quinone reductase activity. Binds strongly to single-stranded DNA.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	64
326925553	328	PREDICTED: quinone oxidoreductase-like [	0.968	0.189	0.555	2e-11
47207857	320	unnamed protein product [Tetraodon nigro	0.968	0.193	0.539	1e-10
324512182	326	Zeta-crystallin [Ascaris suum]	0.875	0.171	0.596	1e-10
344279002	297	PREDICTED: quinone oxidoreductase-like i	0.968	0.208	0.539	2e-10
344279000	331	PREDICTED: quinone oxidoreductase-like i	0.968	0.187	0.539	2e-10
345323536	329	PREDICTED: quinone oxidoreductase-like i	0.968	0.188	0.523	3e-10
310825706	323	NADPH:quinone reductase-like Zn-dependen	0.906	0.179	0.586	3e-10
345323538	295	PREDICTED: quinone oxidoreductase-like i	0.968	0.210	0.523	3e-10
290563358	329	quinone oxidoreductase [Cavia porcellus]	0.968	0.188	0.539	3e-10
405970265	868	Quinone oxidoreductase [Crassostrea giga	0.968	0.071	0.539	4e-10

>gi|326925553|ref|XP_003208977.1| PREDICTED: quinone oxidoreductase-like [Meleagris gallopavo]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 44/63 (69%), Gaps = 1/63 (1%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
           A G+NPVETYIRSG Y  LP LP   G++V+G++E VG+GV  FK GD+VF    L  GG
Sbjct: 43  ACGVNPVETYIRSGNYARLPTLPYTPGSDVAGVIESVGEGVTAFKRGDRVFTSATL-SGG 101

Query: 62  YSQ 64
           Y+ 
Sbjct: 102 YAD 104

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47207857|emb|CAF90610.1| unnamed protein product [Tetraodon nigroviridis]

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 44/63 (69%), Gaps = 1/63 (1%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
          A G+NPVETYIR+G YP  P LP   GT+V+G+VE VG+GV   K GD+VF    +  GG
Sbjct: 35 ACGVNPVETYIRAGWYPRKPTLPYTPGTDVAGVVESVGEGVTAVKAGDRVFTTATV-SGG 93

Query: 62 YSQ 64
          Y++
Sbjct: 94 YAE 96

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|324512182|gb|ADY45051.1| Zeta-crystallin [Ascaris suum]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 43/57 (75%), Gaps = 1/57 (1%)

Query: 3  AGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV-FGKPILG 58
          AG+NPV+TYIRSG Y  LP LP   G E SGIVE+VG+  K+F+VGD+V F  P++G
Sbjct: 42 AGVNPVDTYIRSGHYSVLPHLPYTPGREGSGIVEQVGEKAKNFQVGDRVWFTDPLIG 98

Source: Ascaris suum

Species: Ascaris suum

Genus: Ascaris

Family: Ascarididae

Order: Ascaridida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|344279002|ref|XP_003411280.1| PREDICTED: quinone oxidoreductase-like isoform 2 [Loxodonta africana]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
           A G+NPVETYIRSG Y  LP LP   G++VSG++E VG  V  FK GD+VF    +  GG
Sbjct: 44  ACGVNPVETYIRSGTYNRLPTLPYTPGSDVSGVIEAVGDNVSAFKKGDRVFTTSTV-SGG 102

Query: 62  YSQ 64
           Y++
Sbjct: 103 YAE 105

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|344279000|ref|XP_003411279.1| PREDICTED: quinone oxidoreductase-like isoform 1 [Loxodonta africana]

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
           A G+NPVETYIRSG Y  LP LP   G++VSG++E VG  V  FK GD+VF    +  GG
Sbjct: 44  ACGVNPVETYIRSGTYNRLPTLPYTPGSDVSGVIEAVGDNVSAFKKGDRVFTTSTV-SGG 102

Query: 62  YSQ 64
           Y++
Sbjct: 103 YAE 105

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345323536|ref|XP_001506108.2| PREDICTED: quinone oxidoreductase-like isoform 1 [Ornithorhynchus anatinus]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 1/63 (1%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
           A G+NPVETYIRSG Y   P LP   GT+V+G++E VG+GV  F+ GD+VF    +  GG
Sbjct: 44  ACGVNPVETYIRSGTYSRKPTLPYTPGTDVAGVIEAVGEGVTAFQKGDRVFTSSTI-SGG 102

Query: 62  YSQ 64
           Y++
Sbjct: 103 YAE 105

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|310825706|ref|YP_003958063.1| NADPH:quinone reductase-like Zn-dependent oxidoreductase [Eubacterium limosum KIST612] gi|308737440|gb|ADO35100.1| NADPH:quinone reductase-like Zn-dependent oxidoreductase [Eubacterium limosum KIST612]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 40/58 (68%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGK 59
          AAG+NPVETYIRSG Y  LP LP   G + SGIV+ VG GV+H K GD+VF    L +
Sbjct: 36 AAGVNPVETYIRSGHYTALPALPYTPGNDGSGIVDAVGDGVEHLKKGDRVFVAAALAR 93

Source: Eubacterium limosum KIST612

Species: Eubacterium limosum

Genus: Eubacterium

Family: Eubacteriaceae

Order: Clostridiales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|345323538|ref|XP_003430718.1| PREDICTED: quinone oxidoreductase-like isoform 2 [Ornithorhynchus anatinus]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 1/63 (1%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
           A G+NPVETYIRSG Y   P LP   GT+V+G++E VG+GV  F+ GD+VF    +  GG
Sbjct: 44  ACGVNPVETYIRSGTYSRKPTLPYTPGTDVAGVIEAVGEGVTAFQKGDRVFTSSTI-SGG 102

Query: 62  YSQ 64
           Y++
Sbjct: 103 YAE 105

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|290563358|ref|NP_001166407.1| quinone oxidoreductase [Cavia porcellus] gi|117549|sp|P11415.1|QOR_CAVPO RecName: Full=Quinone oxidoreductase; AltName: Full=NADPH:quinone reductase; AltName: Full=Zeta-crystallin gi|305333|gb|AAA37035.1| zeta-crystallin [Cavia porcellus]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
           A GINPVETYIRSG Y  +P LP   GT+V+G+VE +G  V  FK GD+VF    +  GG
Sbjct: 44  ACGINPVETYIRSGTYTRIPLLPYTPGTDVAGVVESIGNDVSAFKKGDRVFTTSTI-SGG 102

Query: 62  YSQ 64
           Y++
Sbjct: 103 YAE 105

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|405970265|gb|EKC35186.1| Quinone oxidoreductase [Crassostrea gigas]

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 44/63 (69%), Gaps = 1/63 (1%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
           AAGINPV+TYIRSG Y   P LP   G +V+G+VEE+G  VKH K GD+V+   +   GG
Sbjct: 47  AAGINPVDTYIRSGTYAVKPTLPYTPGKDVAGVVEEMGSKVKHLKKGDRVYSMAV-ASGG 105

Query: 62  YSQ 64
           Y++
Sbjct: 106 YAE 108

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	64
UNIPROTKB|P11415	329	CRYZ "Quinone oxidoreductase"	0.968	0.188	0.539	1.6e-12
RGD|1311639	329	Cryz "crystallin, zeta (quinon	0.968	0.188	0.539	3.5e-12
ZFIN|ZDB-GENE-050306-24	328	cryz "crystallin, zeta (quinon	0.968	0.189	0.523	9.7e-12
UNIPROTKB|A6NP24	243	CRYZ "Quinone oxidoreductase"	0.968	0.255	0.492	1e-11
UNIPROTKB|C9JH92	206	CRYZ "Quinone oxidoreductase"	0.968	0.300	0.492	1e-11
UNIPROTKB|E2R3I8	336	CRYZ "Uncharacterized protein"	0.968	0.184	0.507	1.4e-11
UNIPROTKB|P28304	327	qor [Escherichia coli K-12 (ta	0.875	0.171	0.586	1.6e-11
WB|WBGene00009554	328	F39B2.3 [Caenorhabditis elegan	0.796	0.155	0.588	2.1e-11
MGI|MGI:88527	331	Cryz "crystallin, zeta" [Mus m	0.968	0.187	0.523	2.2e-11
UNIPROTKB|A6NN60	295	CRYZ "Quinone oxidoreductase"	0.968	0.210	0.492	2.5e-11

UNIPROTKB|P11415 CRYZ "Quinone oxidoreductase" [Cavia porcellus (taxid:10141)]

 Score = 171 (65.3 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 34/63 (53%), Positives = 43/63 (68%)

Query:     2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
             A GINPVETYIRSG Y  +P LP   GT+V+G+VE +G  V  FK GD+VF    +  GG
Sbjct:    44 ACGINPVETYIRSGTYTRIPLLPYTPGTDVAGVVESIGNDVSAFKKGDRVFTTSTIS-GG 102

Query:    62 YSQ 64
             Y++
Sbjct:   103 YAE 105

GO:0003730 "mRNA 3'-UTR binding" evidence=ISS

GO:0003960 "NADPH:quinone reductase activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0042178 "xenobiotic catabolic process" evidence=ISS

GO:0070402 "NADPH binding" evidence=ISS

GO:0070404 "NADH binding" evidence=ISS

RGD|1311639 Cryz "crystallin, zeta (quinone reductase)" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 3.5e-12, P = 3.5e-12
 Identities = 34/63 (53%), Positives = 43/63 (68%)

Query:     2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
             A G+NPVETYIRSG Y   P LP   G++V+GI+E VG GV  FK GD+VF    +  GG
Sbjct:    44 ACGVNPVETYIRSGTYSRKPALPYTPGSDVAGIIESVGDGVSAFKKGDRVFCFSTVS-GG 102

Query:    62 YSQ 64
             Y++
Sbjct:   103 YAE 105

GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS;IDA

GO:0003960 "NADPH:quinone reductase activity" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0042178 "xenobiotic catabolic process" evidence=ISO;ISS

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0051289 "protein homotetramerization" evidence=IEA;ISO

GO:0070402 "NADPH binding" evidence=ISO;ISS

GO:0070404 "NADH binding" evidence=ISO;ISS

ZFIN|ZDB-GENE-050306-24 cryz "crystallin, zeta (quinone reductase)" [Danio rerio (taxid:7955)]

 Score = 164 (62.8 bits), Expect = 9.7e-12, P = 9.7e-12
 Identities = 33/63 (52%), Positives = 43/63 (68%)

Query:     2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
             A G+NPVETYIRSG Y   P LP   G++VSG+VE VG+GV   + GD+VF    +  GG
Sbjct:    43 ACGVNPVETYIRSGSYARTPSLPYTPGSDVSGVVEAVGKGVCLLQAGDRVFTTGTV-TGG 101

Query:    62 YSQ 64
             Y++
Sbjct:   102 YAE 104

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|A6NP24 CRYZ "Quinone oxidoreductase" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 31/63 (49%), Positives = 41/63 (65%)

Query:     2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
             A G+NPVETYIRSG Y   P LP   G++V+G++E VG     FK GD+VF    +  GG
Sbjct:    44 ACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTIS-GG 102

Query:    62 YSQ 64
             Y++
Sbjct:   103 YAE 105

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|C9JH92 CRYZ "Quinone oxidoreductase" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 31/63 (49%), Positives = 41/63 (65%)

Query:     2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
             A G+NPVETYIRSG Y   P LP   G++V+G++E VG     FK GD+VF    +  GG
Sbjct:    44 ACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTIS-GG 102

Query:    62 YSQ 64
             Y++
Sbjct:   103 YAE 105

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E2R3I8 CRYZ "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 163 (62.4 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 32/63 (50%), Positives = 43/63 (68%)

Query:     2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
             A G+NPVETYIRSG Y   P LP   G++V+GI+E +G+ V  FK GD+VF    +  GG
Sbjct:    51 ACGVNPVETYIRSGTYRRKPLLPYTPGSDVAGIIEAIGENVSTFKKGDRVFTTATIS-GG 109

Query:    62 YSQ 64
             Y++
Sbjct:   110 YAE 112

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P28304 qor [Escherichia coli K-12 (taxid:83333)]

 Score = 162 (62.1 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 34/58 (58%), Positives = 42/58 (72%)

Query:     2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV-FGKPILG 58
             A GIN ++TYIRSG YP  P LP+ LGTE +GIV +VG GVKH K GD+V + +  LG
Sbjct:    37 AIGINFIDTYIRSGLYPP-PSLPSGLGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALG 93

GO:0005737 "cytoplasm" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0003960 "NADPH:quinone reductase activity" evidence=IEA

WB|WBGene00009554 F39B2.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 161 (61.7 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 30/51 (58%), Positives = 41/51 (80%)

Query:     2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVF 52
             AAG+NPV+TYIR+GQY  LP+LP + G + +G VE VG+ VK+ KVGD+V+
Sbjct:    45 AAGVNPVDTYIRAGQYGKLPNLPYVPGKDGAGFVELVGESVKNVKVGDRVW 95

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

MGI|MGI:88527 Cryz "crystallin, zeta" [Mus musculus (taxid:10090)]

 Score = 161 (61.7 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 33/63 (52%), Positives = 42/63 (66%)

Query:     2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
             A G+NPVETYIRSG Y   P LP   G++V+GI+E VG  V  FK GD+VF    +  GG
Sbjct:    44 ACGVNPVETYIRSGAYSRKPALPYTPGSDVAGIIESVGDKVSAFKKGDRVFCYSTVS-GG 102

Query:    62 YSQ 64
             Y++
Sbjct:   103 YAE 105

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003730 "mRNA 3'-UTR binding" evidence=ISO

GO:0003960 "NADPH:quinone reductase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0042178 "xenobiotic catabolic process" evidence=ISO

GO:0050661 "NADP binding" evidence=ISO

GO:0051289 "protein homotetramerization" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0070402 "NADPH binding" evidence=ISO

UNIPROTKB|A6NN60 CRYZ "Quinone oxidoreductase" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 31/63 (49%), Positives = 41/63 (65%)

Query:     2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
             A G+NPVETYIRSG Y   P LP   G++V+G++E VG     FK GD+VF    +  GG
Sbjct:    44 ACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTIS-GG 102

Query:    62 YSQ 64
             Y++
Sbjct:   103 YAE 105

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P43903	QOR_PSEAE	1, ., 6, ., 5, ., 5	0.56	0.7656	0.1507	yes	N/A
P47199	QOR_MOUSE	1, ., 6, ., 5, ., 5	0.5238	0.9687	0.1873	yes	N/A
P40783	QOR_SALTY	1, ., 6, ., 5, ., 5	0.5689	0.875	0.1712	yes	N/A
Q6AYT0	QOR_RAT	1, ., 6, ., 5, ., 5	0.5396	0.9687	0.1884	yes	N/A
P11415	QOR_CAVPO	1, ., 6, ., 5, ., 5	0.5396	0.9687	0.1884	yes	N/A
Q0MVN8	QOR_PIG	1, ., 6, ., 5, ., 5	0.5238	0.9687	0.1884	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	64
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	8e-21
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	1e-18
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	2e-18
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	3e-18
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	3e-17
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	1e-16
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	3e-16
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	3e-16
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	4e-16
PRK10754	327	PRK10754, PRK10754, quinone oxidoreductase, NADPH-	6e-16
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	1e-15
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	8e-15
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	3e-14
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	8e-14
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	8e-14
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	1e-13
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	2e-13
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	6e-12
smart00829	287	smart00829, PKS_ER, Enoylreductase	8e-12
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	1e-11
cd08248	350	cd08248, RTN4I1, Human Reticulon 4 Interacting Pro	1e-11
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	7e-11
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	6e-10
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	7e-10
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	2e-09
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	2e-09
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	2e-09
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	3e-09
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	3e-09
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	5e-09
TIGR02817	336	TIGR02817, adh_fam_1, zinc-binding alcohol dehydro	6e-09
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	7e-09
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	1e-08
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	2e-08
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	2e-08
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	3e-08
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	4e-08
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	4e-08
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	5e-08
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	5e-08
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	8e-08
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	2e-07
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	2e-07
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	3e-07
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	3e-07
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	3e-07
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	3e-07
cd08247	352	cd08247, AST1_like, AST1 is a cytoplasmic protein	4e-07
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	6e-07
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	7e-07
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	8e-07
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	9e-07
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	1e-06
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	1e-06
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	1e-06
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	2e-06
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	2e-06
TIGR01751	398	TIGR01751, crot-CoA-red, crotonyl-CoA reductase	2e-06
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	2e-06
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	3e-06
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	4e-06
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	4e-06
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	4e-06
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	4e-06
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	9e-06
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	9e-06
cd08246	393	cd08246, crotonyl_coA_red, crotonyl-CoA reductase	1e-05
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	1e-05
PLN02827	378	PLN02827, PLN02827, Alcohol dehydrogenase-like	1e-05
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	2e-05
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	2e-05
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	3e-05
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	3e-05
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	4e-05
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	6e-05
cd05281	341	cd05281, TDH, Threonine dehydrogenase	6e-05
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	7e-05
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	9e-05
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	2e-04
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	2e-04
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	2e-04
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	3e-04
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	4e-04
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	4e-04
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	6e-04
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	6e-04
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	0.001
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	0.001
cd05280	325	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ	0.001
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	0.002
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	0.004

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 82.2 bits (204), Expect = 8e-21
 Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 1/62 (1%)

Query: 1  MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP-ILGK 59
           A+G+NP++T IR G     P LPAILG +V+G+VE VG+GV  F+VGD+V+G    LG 
Sbjct: 35 HASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFRVGDEVYGCAGGLGG 94

Query: 60 GG 61
            
Sbjct: 95 LQ 96

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 76.2 bits (188), Expect = 1e-18
 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGK-G 60
          AAG+NP++  +R G  P +  LP I G+E +G+V  VG GV  FKVGD+V     +G+ G
Sbjct: 36 AAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFKVGDRVAALGGVGRDG 95

Query: 61 GYSQ 64
          GY++
Sbjct: 96 GYAE 99

Length = 326

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 75.3 bits (186), Expect = 2e-18
 Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 2  AAGINPVETYIRSGQYPNLP--DLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGK 59
          AAG+NPV+  IR G         LP I G +V+G+V  VG GV  FKVGD+VFG     +
Sbjct: 36 AAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTGFKVGDEVFGMTPFTR 95

Query: 60 GG 61
          GG
Sbjct: 96 GG 97

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 75.3 bits (186), Expect = 3e-18
 Identities = 29/51 (56%), Positives = 41/51 (80%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVF 52
          A+G+NPV+TYIR+G YP LP LP + G++ +G+VE VG+GV   KVGD+V+
Sbjct: 36 ASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLKVGDRVW 86

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 72.5 bits (179), Expect = 3e-17
 Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 8/65 (12%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV--FGKPILGK 59
          A G+N ++TY RSG YP    LP +LG E +G+VE VG GV  FKVGD+V   G P    
Sbjct: 35 AIGVNFIDTYFRSGLYP--LPLPFVLGVEGAGVVEAVGPGVTGFKVGDRVAYAGPP---- 88

Query: 60 GGYSQ 64
          G Y++
Sbjct: 89 GAYAE 93

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 70.4 bits (173), Expect = 1e-16
 Identities = 31/59 (52%), Positives = 37/59 (62%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG 60
          AAG+   + +IR G YP  P LP ILG E +G+V EVG GV   KVGD+V   P LG G
Sbjct: 8  AAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCG 66

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 69.9 bits (172), Expect = 3e-16
 Identities = 29/63 (46%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 1  MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP--ILG 58
           A G+N  +   R G Y   P LPA LG E +G+VE VG GV  F VGD+V   P   LG
Sbjct: 35 EAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFAVGDRVSVIPAADLG 94

Query: 59 KGG 61
          + G
Sbjct: 95 QYG 97

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 69.4 bits (171), Expect = 3e-16
 Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
          AAG+N  +   R G YP  P    ILG EV+G+V  VG GV  +KVGD+V    +L  GG
Sbjct: 36 AAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWKVGDRVCA--LLAGGG 93

Query: 62 YSQ 64
          Y++
Sbjct: 94 YAE 96

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 69.5 bits (171), Expect = 4e-16
 Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
          A G+N  +   R G Y + P  P + G E +G VE VG+GVK FKVGD+V G      GG
Sbjct: 35 ACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKVGDRVMGLTRF--GG 92

Query: 62 YS 63
          Y+
Sbjct: 93 YA 94

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|182701 PRK10754, PRK10754, quinone oxidoreductase, NADPH-dependent; Provisional

 Score = 69.0 bits (169), Expect = 6e-16
 Identities = 32/50 (64%), Positives = 39/50 (78%), Gaps = 1/50 (2%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          A GIN ++TYIRSG YP  P LP+ LGTE +G+V +VG GVKH KVGD+V
Sbjct: 37 AIGINYIDTYIRSGLYPP-PSLPSGLGTEAAGVVSKVGSGVKHIKVGDRV 85

Length = 327

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 67.9 bits (167), Expect = 1e-15
 Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 1  MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG 60
           AAG+N  +  +  G+Y   P LP + G+EV+G+VE VG+GV  FKVGD+V    + G+G
Sbjct: 35 EAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGFKVGDRVVA--LTGQG 92

Query: 61 GYSQ 64
          G+++
Sbjct: 93 GFAE 96

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 65.7 bits (161), Expect = 8e-15
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG 53
          A  +NPV+   +   Y  +P  PAILG + +G V EVG GV  FKVGD+V G
Sbjct: 35 AVALNPVDWKHQD--YGFIPSYPAILGCDFAGTVVEVGSGVTRFKVGDRVAG 84

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score = 61.1 bits (149), Expect = 3e-14
 Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG 60
          AAGI   + +I  G+ P +  LP ILG E +GIVEEVG GV   KVGD+V   P++  G
Sbjct: 10 AAGICGSDLHIYRGEPPPVK-LPLILGHEGAGIVEEVGPGVTGLKVGDRVVVYPLIPCG 67

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 63.0 bits (154), Expect = 8e-14
 Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
          AAG+N  +   R+G+YP  P    ILG EV+G V  VG+GV  +KVGD+V    ++  GG
Sbjct: 36 AAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWKVGDRVCA--LVAGGG 93

Query: 62 YSQ 64
          Y++
Sbjct: 94 YAE 96

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 63.1 bits (154), Expect = 8e-14
 Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 2/64 (3%)

Query: 1  MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG 60
           AAG+N  +T  R G+YP  P    ILG EV+G VE+VG  VK FK GD+V    +L  G
Sbjct: 36 SAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRFKEGDRVMA--LLPGG 93

Query: 61 GYSQ 64
          GY++
Sbjct: 94 GYAE 97

Length = 334

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score = 62.5 bits (153), Expect = 1e-13
 Identities = 26/51 (50%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVF 52
          A  +NPV+T +R+G  P  P  P ILG + SG+VE VG  V  FKVGD+V+
Sbjct: 39 AVSVNPVDTKVRAGGAPV-PGQPKILGWDASGVVEAVGSEVTLFKVGDEVY 88

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 62.2 bits (152), Expect = 2e-13
 Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 5/67 (7%)

Query: 2   AAGINPVETYIRSGQYPNLPDL---PAILGTEVSGIVEEVGQGVKHFKVGDKVFGK-PIL 57
           AA +NPV+  +R G  P L      P I G + +G V  VG GV  FKVGD+VFG+ P  
Sbjct: 35  AASVNPVDWKLRRG-PPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPPK 93

Query: 58  GKGGYSQ 64
           G G  ++
Sbjct: 94  GGGALAE 100

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 57.7 bits (140), Expect = 6e-12
 Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
          AA INP +    SG Y + P LPA+ G E  G+V EVG GV    VG +V   P+ G+G 
Sbjct: 35 AAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVL--PLGGEGT 92

Query: 62 YSQ 64
          + +
Sbjct: 93 WQE 95

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 57.4 bits (140), Expect = 8e-12
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 7/63 (11%)

Query: 1  MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG 60
           AAG+N  +  I  G YP      A+LG E +G+V  VG GV    VGD+V G   L  G
Sbjct: 4  RAAGLNFRDVLIALGLYPG----EAVLGGECAGVVTRVGPGVTGLAVGDRVMG---LAPG 56

Query: 61 GYS 63
           ++
Sbjct: 57 AFA 59

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 56.8 bits (138), Expect = 1e-11
 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 1  MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG 60
           AAG+N  +  +  G  P        LG E SGIV  VG GV   KVGD+V G   L  G
Sbjct: 8  KAAGLNFRDVLVALGLLP---GDETPLGLECSGIVTRVGSGVTGLKVGDRVMG---LAPG 61

Query: 61 GYS 63
           ++
Sbjct: 62 AFA 64

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1

 Score = 56.8 bits (138), Expect = 1e-11
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 14/66 (21%)

Query: 2   AAGINPVETYIRSG--------------QYPNLPDLPAILGTEVSGIVEEVGQGVKHFKV 47
           AA +NP++  +RSG                 +  + P  LG + SG+V ++G GVK F++
Sbjct: 38  AASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRDCSGVVVDIGSGVKSFEI 97

Query: 48  GDKVFG 53
           GD+V+G
Sbjct: 98  GDEVWG 103

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 55.0 bits (133), Expect = 7e-11
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          AA +N ++ ++R G       LP ILG++ +G+VE VG GV + K G +V
Sbjct: 36 AAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVKPGQRV 85

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score = 52.1 bits (125), Expect = 6e-10
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          A G+   + ++  G+ P    LP ILG E +GIVE +G GV   K GDKV
Sbjct: 34 ATGVCHTDLHVIDGKLPTP--LPVILGHEGAGIVESIGPGVTTLKPGDKV 81

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score = 52.2 bits (126), Expect = 7e-10
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 1  MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
           A G+   + +  SG  P     PA+LG E +GIVE VG+GV   K GD V
Sbjct: 35 TATGVCHTDAHTLSGDDP--EGFPAVLGHEGAGIVEAVGEGVTSVKPGDHV 83

Length = 366

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 51.2 bits (123), Expect = 2e-09
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 1  MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG 60
           AAG+   +     G +P     P ILG E+ G VEEVG+GV+ FK GD+V     +  G
Sbjct: 33 KAAGVCYRDLLFWKGFFPRG-KYPLILGHEIVGTVEEVGEGVERFKPGDRVILYYYIPCG 91

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score = 51.0 bits (123), Expect = 2e-09
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 12 IRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          +R G  P    LPA+LG E +G+VE VG  V   K GD V
Sbjct: 46 VRDGGLP--TPLPAVLGHEGAGVVEAVGSAVTGLKPGDHV 83

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 50.4 bits (121), Expect = 2e-09
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
           AG+NPV+  + +      P +P I G E +G+VEEVG  VK  K GD+V
Sbjct: 35 MAGVNPVDYNVINA-VKVKP-MPHIPGAEFAGVVEEVGDHVKGVKKGDRV 82

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score = 50.2 bits (121), Expect = 3e-09
 Identities = 18/30 (60%), Positives = 21/30 (70%)

Query: 22 DLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
           LPA+LG E +G+VEEVG GV   K GD V
Sbjct: 52 PLPAVLGHEGAGVVEEVGPGVTGVKPGDHV 81

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score = 50.2 bits (121), Expect = 3e-09
 Identities = 20/38 (52%), Positives = 24/38 (63%)

Query: 23  LPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG 60
            P  LG E SG+V EVG GV  FKVGD+V  +P +  G
Sbjct: 64  APVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTIKCG 101

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score = 49.6 bits (119), Expect = 5e-09
 Identities = 21/45 (46%), Positives = 29/45 (64%)

Query: 14 SGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILG 58
           G Y   P+LPAI G+E  G+V+ VG+GVK  +VG +V   P+ G
Sbjct: 49 RGTYGYKPELPAIGGSEAVGVVDAVGEGVKGLQVGQRVAVAPVHG 93

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|234024 TIGR02817, adh_fam_1, zinc-binding alcohol dehydrogenase family protein

 Score = 49.4 bits (118), Expect = 6e-09
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVF 52
          A  +NPV+T +R+   P     P ILG + +G+V  VG  V  FK GD+V+
Sbjct: 38 AISVNPVDTKVRARMAPE-AGQPKILGWDAAGVVVAVGDEVTLFKPGDEVW 87

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model [Energy metabolism, Fermentation]. Length = 336

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score = 49.3 bits (118), Expect = 7e-09
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 2   AAGINPVETYIRSG--QYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGK 59
           AAG++ V+T +RSG    P  P+LP + G EV+G+V+ VG GV    +G +V        
Sbjct: 36  AAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDPAWLGRRVVAHTGRAG 95

Query: 60  GGYSQ 64
           GGY++
Sbjct: 96  GGYAE 100

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 48.4 bits (116), Expect = 1e-08
 Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 6/62 (9%)

Query: 1  MAAGI--NPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILG 58
           A GI  + +  Y+ +G Y      P +LG E SG VEEVG GV    VGD+V   P+L 
Sbjct: 32 KACGICGSDIPRYLGTGAYH----PPLVLGHEFSGTVEEVGSGVDDLAVGDRVAVNPLLP 87

Query: 59 KG 60
           G
Sbjct: 88 CG 89

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score = 48.3 bits (116), Expect = 2e-08
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 1  MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
           A GI   + +I  G++      P + G E +G+V  VG  V  FKVGD+V
Sbjct: 32 AACGICGTDLHIYEGEFG--AAPPLVPGHEFAGVVVAVGSKVTGFKVGDRV 80

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score = 48.1 bits (115), Expect = 2e-08
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          A GI   + ++ SG+       P ILG E +GIVE VG+GV   K GDKV
Sbjct: 41 ATGICRSDDHVVSGKLVTP--FPVILGHEAAGIVESVGEGVTTVKPGDKV 88

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 47.5 bits (114), Expect = 3e-08
 Identities = 20/50 (40%), Positives = 29/50 (58%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          A  +N  +  I +G+YP     P I  ++ +G V  VG+GV  FKVGD+V
Sbjct: 36 AVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFKVGDRV 85

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score = 47.2 bits (113), Expect = 4e-08
 Identities = 19/38 (50%), Positives = 24/38 (63%)

Query: 21 PDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILG 58
             P ILG E++G + EVG GV  FKVGD+VF  P + 
Sbjct: 51 LKPPRILGHEIAGEIVEVGDGVTGFKVGDRVFVAPHVP 88

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score = 47.1 bits (113), Expect = 4e-08
 Identities = 16/28 (57%), Positives = 19/28 (67%)

Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          P +LG E +G V  VG GV H KVGD+V
Sbjct: 55 PMVLGHESAGTVVAVGSGVTHLKVGDRV 82

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score = 46.8 bits (112), Expect = 5e-08
 Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 12/58 (20%)

Query: 3  AGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG 60
           G NP  +Y            P ILG E+SG V EVG+GV   KVGD+V   P +  G
Sbjct: 45 HGRNPFASY------------PRILGHELSGEVVEVGEGVAGLKVGDRVVVDPYISCG 90

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score = 46.8 bits (112), Expect = 5e-08
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 12 IRSGQYPNL--PDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          +  G +  +    LP  LG E +G VEEVG GV   K GD V
Sbjct: 44 VIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLKEGDPV 85

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score = 46.0 bits (110), Expect = 8e-08
 Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 15 GQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          G +P    LP I G E+ G V EVG+GV   KVGD+V
Sbjct: 50 GDWPVPK-LPLIPGHEIVGTVVEVGEGVTGLKVGDRV 85

Length = 339

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 44.9 bits (107), Expect = 2e-07
 Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 1  MAAGINPVETYIRSGQYPNLP----DLPAILGTEVSGIVEEVGQGVKHFKVGDKVF-GKP 55
          +AA INP +     G YP  P    + PA+ G E  G V +VG GVK  K GD V   +P
Sbjct: 37 LAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGSGVKSLKPGDWVIPLRP 96

Query: 56 ILG 58
           LG
Sbjct: 97 GLG 99

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score = 45.0 bits (107), Expect = 2e-07
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 1  MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          +A  +   +     G        P ILG E +GIVE VG+GV + K GDKV
Sbjct: 35 LATSVCHTDILAIEGFKA--TLFPVILGHEGAGIVESVGEGVTNLKPGDKV 83

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 44.6 bits (106), Expect = 3e-07
 Identities = 22/39 (56%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 15 GQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG 53
          G YP +   P ILG EV G VEEVG+ VK FK GD+V  
Sbjct: 47 GFYPRM-KYPVILGHEVVGTVEEVGENVKGFKPGDRVAS 84

Length = 334

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score = 44.3 bits (105), Expect = 3e-07
 Identities = 17/37 (45%), Positives = 20/37 (54%)

Query: 15 GQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          G YP +P  P   G E SG+V  VG  V    VGD+V
Sbjct: 29 GLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEV 65

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 44.6 bits (106), Expect = 3e-07
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
          AAG+NPV+  + +   P     P + G + +G+V  VG  V  +KVGD+V     L +GG
Sbjct: 36 AAGLNPVDWKVIAWGPPA-WSYPHVPGVDGAGVVVAVGAKVTGWKVGDRVAYHASLARGG 94

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score = 44.6 bits (106), Expect = 3e-07
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query: 20 LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
           P  P ILG E +GIVE VG+GV   K GD V
Sbjct: 53 TPLFPRILGHEAAGIVESVGEGVTDLKPGDHV 84

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

 Score = 44.2 bits (105), Expect = 4e-07
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH-FKVGDKVFG---KPIL 57
           AA +NPV+  + +    +       LG + SG++ +VG  V   +KVGD+V G    P  
Sbjct: 37  AAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASEWKVGDEVCGIYPHPYG 96

Query: 58  GKGGYSQ 64
           G+G  SQ
Sbjct: 97  GQGTLSQ 103

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 352

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 43.7 bits (103), Expect = 6e-07
 Identities = 17/41 (41%), Positives = 28/41 (68%)

Query: 17  YPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL 57
           YP L + P ++G E SG+VE+ G+ VK+F+ GD V  + ++
Sbjct: 81  YPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTAEEMM 121

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score = 43.4 bits (103), Expect = 7e-07
 Identities = 17/28 (60%), Positives = 19/28 (67%)

Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          P ILG E +GIVE VG+GV   K GD V
Sbjct: 57 PVILGHEGAGIVESVGEGVTSVKPGDHV 84

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score = 43.4 bits (103), Expect = 8e-07
 Identities = 17/26 (65%), Positives = 20/26 (76%)

Query: 26 ILGTEVSGIVEEVGQGVKHFKVGDKV 51
          ILG E  G+VEEVG  V +FKVGD+V
Sbjct: 57 ILGHEGVGVVEEVGSAVTNFKVGDRV 82

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 43.3 bits (103), Expect = 9e-07
 Identities = 19/40 (47%), Positives = 23/40 (57%)

Query: 12 IRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
             G +P  P LP I G E +G+V  VG GV   KVGD+V
Sbjct: 45 AALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKVGDRV 84

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 43.0 bits (102), Expect = 1e-06
 Identities = 25/50 (50%), Positives = 32/50 (64%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          AAG+   + +I  G  P L  LP  LG E++G V EVG GV +FKVGD+V
Sbjct: 35 AAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKVGDRV 84

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score = 42.9 bits (102), Expect = 1e-06
 Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 2/34 (5%)

Query: 20 LPDLPA--ILGTEVSGIVEEVGQGVKHFKVGDKV 51
          +P +    ILG E  G+VEEVG  V++ KVGD+V
Sbjct: 49 IPGMKKGDILGHEFMGVVEEVGPEVRNLKVGDRV 82

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 42.6 bits (101), Expect = 1e-06
 Identities = 24/44 (54%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 15 GQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILG 58
          G  P  P LP I G E+ G VE VG GV  F VGD+V G P LG
Sbjct: 51 GDLPP-PKLPLIPGHEIVGRVEAVGPGVTRFSVGDRV-GVPWLG 92

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score = 42.2 bits (100), Expect = 2e-06
 Identities = 20/49 (40%), Positives = 24/49 (48%)

Query: 3  AGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
           GIN  +    +G+Y      P   G E  G V  VG+GV  FKVGD V
Sbjct: 40 VGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVTDFKVGDAV 88

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          A+G+   + ++ +G  P +P  P + G E +G+V +VG GV   K GD V
Sbjct: 35 ASGLCHSDEHLVTGDLP-MPRYPILGGHEGAGVVTKVGPGVTGVKPGDHV 83

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|188164 TIGR01751, crot-CoA-red, crotonyl-CoA reductase

 Score = 42.1 bits (99), Expect = 2e-06
 Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 12/62 (19%)

Query: 1   MAAGIN----------PVETYIRSGQYPNLPDLP-AILGTEVSGIVEEVGQGVKHFKVGD 49
           MAAG+N          PV T     +     DLP  I+G++ SG+V  VG GV  +KVGD
Sbjct: 45  MAAGVNYNNVWAALGEPVST-FAFLRKYGKLDLPFHIIGSDASGVVWRVGPGVTRWKVGD 103

Query: 50  KV 51
           +V
Sbjct: 104 EV 105

The enzyme modelled by This model is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. Length = 398

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score = 42.2 bits (100), Expect = 2e-06
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 18 PNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
               LP + G E +G+V EVG+ V  ++VGD+V
Sbjct: 49 DPDVTLPHVPGHEFAGVVVEVGEDVSRWRVGDRV 82

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score = 41.7 bits (98), Expect = 3e-06
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 24  PAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55
           P ++G E +GI+EEVG  VKH  VGD+V  +P
Sbjct: 74  PMVIGHECAGIIEEVGSEVKHLVVGDRVALEP 105

Length = 364

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 41.3 bits (98), Expect = 4e-06
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          P + G E+ GIV  VG  V  FKVGD+V
Sbjct: 54 PLVPGHEIVGIVVAVGSKVTKFKVGDRV 81

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 41.5 bits (98), Expect = 4e-06
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 21 PDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
           + P +LG E SG + EVG  V+ +KVGD+V
Sbjct: 53 VETPVVLGHEFSGTIVEVGPDVEGWKVGDRV 83

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 41.5 bits (98), Expect = 4e-06
 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
          A+G++  +  +R G YP+ P LP   G ++ G V+ +G GV  F+VGD+V     +  GG
Sbjct: 36 ASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFEVGDRVAALTRV--GG 93

Query: 62 YSQ 64
           ++
Sbjct: 94 NAE 96

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 41.3 bits (98), Expect = 4e-06
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKVFG 53
          P ++G E  G V EVG  V  FKVGD+V G
Sbjct: 58 PMVVGHEFVGEVVEVGSEVTGFKVGDRVSG 87

Length = 341

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 40.3 bits (95), Expect = 9e-06
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          A G+   + +++ G  P L   P + G EV G ++ VG+GV  +KVGD+V
Sbjct: 34 ACGVCHSDAFVKEGAMPGLS-YPRVPGHEVVGRIDAVGEGVSRWKVGDRV 82

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 40.3 bits (95), Expect = 9e-06
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 21 PDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
           +   +LG E  G VEEVG  V+  KVGD+V
Sbjct: 51 AEPGLVLGHEAMGEVEEVGSAVESLKVGDRV 81

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 11/61 (18%)

Query: 1   MAAGIN----------PVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDK 50
           MAAG+N          PV T+    +         I G++ SGIV  VG+GVK++KVGD+
Sbjct: 50  MAAGVNYNNVWAALGEPVSTFAARQRRGRDEPY-HIGGSDASGIVWAVGEGVKNWKVGDE 108

Query: 51  V 51
           V
Sbjct: 109 V 109

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 40.2 bits (94), Expect = 1e-05
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKVFGK 54
          P ++G EV+G V  +G GV+  KVGD V  +
Sbjct: 56 PQVVGHEVAGEVVGIGPGVEGIKVGDYVSVE 86

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like

 Score = 39.9 bits (93), Expect = 1e-05
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 23 LPAILGTEVSGIVEEVGQGVKHFKVGDKVF 52
           P I G E SGIVE +G+GV  F+ GD V 
Sbjct: 63 FPRIFGHEASGIVESIGEGVTEFEKGDHVL 92

Length = 378

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 39.5 bits (93), Expect = 2e-05
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          P +LG EVSG+VE VG GV     G +V
Sbjct: 54 PMVLGHEVSGVVEAVGPGVTGLAPGQRV 81

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score = 39.4 bits (92), Expect = 2e-05
 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          A G+   + +  SG  P     P ILG E +GIVE VG+GV   KVGD V
Sbjct: 35 ATGVCHTDAFTLSGADPE-GVFPVILGHEGAGIVEAVGEGVTSVKVGDHV 83

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score = 39.1 bits (92), Expect = 3e-05
 Identities = 17/26 (65%), Positives = 19/26 (73%)

Query: 26 ILGTEVSGIVEEVGQGVKHFKVGDKV 51
          ILG E  G+VEEVG  VK FK GD+V
Sbjct: 56 ILGHEAVGVVEEVGSEVKDFKPGDRV 81

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score = 38.8 bits (91), Expect = 3e-05
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 15 GQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          G +      P + G E+ G V EVG GV+  KVGD+V
Sbjct: 46 GDWGGSK-YPLVPGHEIVGEVVEVGAGVEGRKVGDRV 81

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score = 38.5 bits (90), Expect = 4e-05
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 22 DLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
           LP  LG E +G+V EVG+GV   +VGD V
Sbjct: 60 PLPMALGHEAAGVVVEVGEGVTDLEVGDHV 89

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score = 38.0 bits (89), Expect = 6e-05
 Identities = 15/26 (57%), Positives = 16/26 (61%)

Query: 26 ILGTEVSGIVEEVGQGVKHFKVGDKV 51
          ILG E  G V EVG  VK  K GD+V
Sbjct: 57 ILGHEFVGEVVEVGSDVKRLKPGDRV 82

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score = 38.0 bits (89), Expect = 6e-05
 Identities = 16/28 (57%), Positives = 18/28 (64%)

Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          P I G E +G V EVG+GV   KVGD V
Sbjct: 58 PLIFGHEFAGEVVEVGEGVTRVKVGDYV 85

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score = 37.9 bits (88), Expect = 7e-05
 Identities = 17/28 (60%), Positives = 20/28 (71%)

Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          P ILG E +GIVE VG+GV+  K GD V
Sbjct: 66 PRILGHEAAGIVESVGEGVEDLKAGDHV 93

Length = 381

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 37.6 bits (88), Expect = 9e-05
 Identities = 16/31 (51%), Positives = 17/31 (54%)

Query: 22 DLPAILGTEVSGIVEEVGQGVKHFKVGDKVF 52
           LP   G    G V EVG GV  FK GD+VF
Sbjct: 19 PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVF 49

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 15/26 (57%), Positives = 19/26 (73%)

Query: 26 ILGTEVSGIVEEVGQGVKHFKVGDKV 51
          I G E +G+V  VG GV HF+VGD+V
Sbjct: 57 IPGHEPAGVVVAVGPGVTHFRVGDRV 82

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVF 52
          A G+N  E + R G  P++   P +LG E  G VEE   G   F  G +V 
Sbjct: 36 AFGLNRSEIFTRQGHSPSV-KFPRVLGIEAVGEVEEAPGG--TFTPGQRVA 83

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 24 PAILGTEVSGIVEEVGQGVKH---FKVGDKVFG 53
          P +LG E+SG V EVG  V++     VGD+V G
Sbjct: 54 PFVLGHEISGEVVEVGPNVENPYGLSVGDRVVG 86

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 36.2 bits (84), Expect = 3e-04
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 21 PDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ 64
          P  P   G E  G V  +G GV+   VGD+V G   L  G +++
Sbjct: 49 PAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAG---LSGGAFAE 89

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score = 35.7 bits (83), Expect = 4e-04
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 21 PDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
               +LG E  G V EVG  V+  KVGD+V
Sbjct: 51 STPGFVLGHEFVGEVVEVGPEVRTLKVGDRV 81

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score = 35.9 bits (83), Expect = 4e-04
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 22 DLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          + P +LG E +G+VE VG+GV     GD V
Sbjct: 53 EFPFLLGHEAAGVVEAVGEGVTDVAPGDYV 82

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 35.4 bits (82), Expect = 6e-04
 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 15 GQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          G  P +P    ILG E  G V EVG  V+ FKVGD+V
Sbjct: 47 GGEPFVPPGDIILGHEFVGEVVEVGV-VRGFKVGDRV 82

Length = 350

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score = 35.3 bits (82), Expect = 6e-04
 Identities = 18/38 (47%), Positives = 21/38 (55%)

Query: 23  LPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG 60
           LP +LG E+ G V  VG      KVGDKV   P +G G
Sbjct: 66  LPLVLGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCG 103

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 34.5 bits (79), Expect = 0.001
 Identities = 14/28 (50%), Positives = 20/28 (71%)

Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          P + G E+ GIV ++G+ VK FK GD+V
Sbjct: 67 PIVPGHEIVGIVTKLGKNVKKFKEGDRV 94

Length = 360

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 34.6 bits (80), Expect = 0.001
 Identities = 17/26 (65%), Positives = 19/26 (73%)

Query: 26 ILGTEVSGIVEEVGQGVKHFKVGDKV 51
          ILG E  GIV+EVG GV   KVGD+V
Sbjct: 56 ILGHEGIGIVKEVGPGVTSLKVGDRV 81

Length = 338

>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases

 Score = 34.1 bits (79), Expect = 0.001
 Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 3   AGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV----FGKPILG 58
           + +N  +    +G      + P   G + +G V         F+ GD+V    +   +  
Sbjct: 37  SSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSSDDP--RFREGDEVLVTGYDLGMNT 94

Query: 59  KGGYSQ 64
            GG+++
Sbjct: 95  DGGFAE 100

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score = 33.8 bits (78), Expect = 0.002
 Identities = 15/30 (50%), Positives = 17/30 (56%)

Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKVFG 53
          PA +G E  G+VEEVG  V   K GD V  
Sbjct: 54 PAPIGHEFVGVVEEVGSEVTSVKPGDFVIA 83

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score = 33.2 bits (76), Expect = 0.004
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 3  AGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG 60
          AGI   +++I  G  P     P ++G E  G+++ VG+GV   ++G++V   P++  G
Sbjct: 34 AGICGSDSHIYRGHNP-FAKYPRVIGHEFFGVIDAVGEGVDAARIGERVAVDPVISCG 90

Length = 339

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	64
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	99.73
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.72
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	99.67
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	99.62
KOG1197|consensus	336		99.61
KOG0023|consensus	360		99.61
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	99.56
KOG0025|consensus	354		99.56
PLN02740	381	Alcohol dehydrogenase-like	99.5
KOG0022|consensus	375		99.48
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	99.43
PLN02586	360	probable cinnamyl alcohol dehydrogenase	99.41
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.41
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	99.41
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	99.41
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	99.4
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	99.4
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.39
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	99.39
PLN02178	375	cinnamyl-alcohol dehydrogenase	99.38
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	99.38
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	99.37
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	99.36
KOG0024|consensus	354		99.34
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	99.34
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	99.33
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	99.31
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.3
PLN02827	378	Alcohol dehydrogenase-like	99.3
PLN02514	357	cinnamyl-alcohol dehydrogenase	99.28
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.26
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.26
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.21
PRK10083	339	putative oxidoreductase; Provisional	99.21
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.21
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	99.2
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	99.18
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	99.18
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.18
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	99.17
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.17
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.17
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.16
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.16
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.15
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	99.15
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.14
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.12
PTZ00354	334	alcohol dehydrogenase; Provisional	99.11
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	99.11
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.1
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.1
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	99.1
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.09
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.09
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.08
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.08
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.08
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	99.08
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.07
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.07
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.07
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.06
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.06
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.05
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	99.05
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.05
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.04
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.04
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.04
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.04
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.04
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.03
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.03
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.03
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.03
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.02
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.02
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.01
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.01
PLN02702	364	L-idonate 5-dehydrogenase	99.01
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.01
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.0
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.0
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	98.99
PRK13771	334	putative alcohol dehydrogenase; Provisional	98.99
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	98.99
cd08252	336	AL_MDR Arginate lyase and other MDR family members	98.98
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	98.97
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	98.97
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	98.97
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	98.95
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	98.94
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	98.94
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	98.94
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	98.93
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	98.93
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	98.93
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	98.93
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	98.91
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	98.9
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	98.88
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	98.88
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	98.86
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	98.86
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	98.84
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	98.84
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	98.82
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	98.82
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	98.8
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	98.79
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	98.79
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	98.78
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	98.78
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	98.76
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	98.76
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	98.76
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	98.76
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	98.6
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	98.39
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	98.35
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	98.2
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	98.06
KOG1198|consensus	347		97.89
cd00320	93	cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); C	94.16
PTZ00414	100	10 kDa heat shock protein; Provisional	93.49
PRK00364	95	groES co-chaperonin GroES; Reviewed	93.14
KOG1202|consensus	2376		93.1
PRK14533	91	groES co-chaperonin GroES; Provisional	91.75
PF00166	93	Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR0208	90.78
COG0234	96	GroS Co-chaperonin GroES (HSP10) [Posttranslationa	90.23
COG2130	340	Putative NADP-dependent oxidoreductases [General f	89.39
cd06919	111	Asp_decarbox Aspartate alpha-decarboxylase or L-as	83.67
TIGR00223	126	panD L-aspartate-alpha-decarboxylase. Members of t	81.75
PRK05449	126	aspartate alpha-decarboxylase; Provisional	80.61
PF02261	116	Asp_decarbox: Aspartate decarboxylase; InterPro: I	80.31

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=99.73  E-value=1.5e-17  Score=99.98  Aligned_cols=61  Identities=36%  Similarity=0.552  Sum_probs=53.4

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE-ecCCCCccc
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG-KPILGKGGY   62 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~-~~~~~~G~~   62 (64)
                      +|+|+|++|++..+|.++.. .+|.+||||.+|+|+++|++|++|++||+|.. +....||.|
T Consensus        36 ~~~GVChsDlH~~~G~~~~~-~~P~ipGHEivG~V~~vG~~V~~~k~GDrVgV~~~~~~Cg~C   97 (339)
T COG1064          36 EACGVCHTDLHVAKGDWPVP-KLPLIPGHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGEC   97 (339)
T ss_pred             EEEeecchhhhhhcCCCCCC-CCCccCCcceEEEEEEecCCCccCCCCCEEEecCccCCCCCC
Confidence            48999999999999998864 59999999999999999999999999999988 554455554

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.72  E-value=2e-17  Score=85.71  Aligned_cols=56  Identities=48%  Similarity=0.706  Sum_probs=46.1

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI   56 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~   56 (64)
                      ++++||++|++++++.......+|.++|||++|+|+++|+++++|++||+|+....
T Consensus         9 ~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~   64 (109)
T PF08240_consen    9 RAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPN   64 (109)
T ss_dssp             EEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESE
T ss_pred             EEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecc
Confidence            48999999999999853334478999999999999999999999999999999654

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=99.67  E-value=2.2e-16  Score=94.55  Aligned_cols=64  Identities=44%  Similarity=0.771  Sum_probs=54.8

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC-CCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL-GKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~-~~G~~ae   64 (64)
                      +|+++|+.|++++.|..+....+|+++|.|++|+|+++|++|++|++||+|+..... +.|+|||
T Consensus        35 ~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~~GdrV~~~~~~~~~G~~AE   99 (326)
T COG0604          35 KAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFKVGDRVAALGGVGRDGGYAE   99 (326)
T ss_pred             EEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcCCCCEEEEccCCCCCCccee
Confidence            489999999999999633333689999999999999999999999999999999621 2699987

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=99.62  E-value=6.6e-16  Score=92.79  Aligned_cols=60  Identities=38%  Similarity=0.529  Sum_probs=54.7

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCccc
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGY   62 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~   62 (64)
                      .|+|+|++|.+.++|..|.  .+|.++|||.+|+|+++|++|+.+++||.|+....+.||-|
T Consensus        35 ~AtGVCHTD~~~~~G~~p~--~~P~vLGHEgAGiVe~VG~gVt~vkpGDhVI~~f~p~CG~C   94 (366)
T COG1062          35 TATGVCHTDAHTLSGDDPE--GFPAVLGHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQC   94 (366)
T ss_pred             EEeeccccchhhhcCCCCC--CCceecccccccEEEEecCCccccCCCCEEEEcccCCCCCC
Confidence            4899999999999998775  49999999999999999999999999999999998767654

>KOG1197|consensus

Probab=99.61  E-value=1.2e-15  Score=89.40  Aligned_cols=61  Identities=39%  Similarity=0.615  Sum_probs=55.9

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      +|+|+|..|++.++|.|. ....|++||.|.+|+|+++|+.|+++++||+|+.+.+  .|+|+|
T Consensus        43 ka~GlNfid~y~RkGlY~-~~plPytpGmEaaGvVvAvG~gvtdrkvGDrVayl~~--~g~yae  103 (336)
T KOG1197|consen   43 KACGLNFIDLYFRKGLYD-PAPLPYTPGMEAAGVVVAVGEGVTDRKVGDRVAYLNP--FGAYAE  103 (336)
T ss_pred             hhcCccHHHHHHhccccC-CCCCCcCCCcccceEEEEecCCccccccccEEEEecc--chhhhe
Confidence            489999999999999884 3478999999999999999999999999999999997  799886

>KOG0023|consensus

Probab=99.61  E-value=1.6e-15  Score=90.61  Aligned_cols=54  Identities=28%  Similarity=0.430  Sum_probs=49.7

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +++|+|++|+++..+.|+. .++|.++|||.+|+|+++|++|++|++||+|-.=.
T Consensus        44 ~~cGIChsDlH~~~gdwg~-s~~PlV~GHEiaG~VvkvGs~V~~~kiGD~vGVg~   97 (360)
T KOG0023|consen   44 EYCGVCHSDLHAWKGDWGL-SKYPLVPGHEIAGVVVKVGSNVTGFKIGDRVGVGW   97 (360)
T ss_pred             EEEeccchhHHHhhccCCc-ccCCccCCceeeEEEEEECCCcccccccCeeeeeE
Confidence            4899999999999999886 68999999999999999999999999999996544

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=99.56  E-value=1.6e-14  Score=88.15  Aligned_cols=53  Identities=26%  Similarity=0.347  Sum_probs=46.4

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      ++++||++|++.+.+.++.  .+|.++|||++|+|+++|++|++|++||+|....
T Consensus        41 ~a~gIcgsD~~~~~g~~~~--~~p~i~GhE~~G~V~~vG~~V~~~~vGdrV~~~~   93 (393)
T TIGR02819        41 VTTNICGSDQHMVRGRTTA--PTGLVLGHEITGEVIEKGRDVEFIKIGDIVSVPF   93 (393)
T ss_pred             EEeeecHHHHHHHCCCCCC--CCCccccceeEEEEEEEcCccccccCCCEEEEec
Confidence            4789999999999886432  4689999999999999999999999999997753

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>KOG0025|consensus

Probab=99.56  E-value=1.1e-14  Score=86.37  Aligned_cols=63  Identities=41%  Similarity=0.572  Sum_probs=57.9

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      .|+.|||+|+..++|.||..+.+|.+-|.|.+|+|+++|++++.|++||+|+.... ..|+|++
T Consensus        55 LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs~vkgfk~Gd~VIp~~a-~lGtW~t  117 (354)
T KOG0025|consen   55 LAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGSNVKGFKPGDWVIPLSA-NLGTWRT  117 (354)
T ss_pred             eecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecCCcCccCCCCeEeecCC-CCcccee
Confidence            37889999999999999988889999999999999999999999999999999887 5788864

>PLN02740 Alcohol dehydrogenase-like

Probab=99.50  E-value=1e-13  Score=83.93  Aligned_cols=61  Identities=33%  Similarity=0.440  Sum_probs=50.5

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcc
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG   61 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~   61 (64)
                      +++++|++|++.+.+.++....+|.++|||++|+|+++|+++++|++||+|++.....||.
T Consensus        43 ~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~  103 (381)
T PLN02740         43 LYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECGD  103 (381)
T ss_pred             EEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCCCCcCCCCCEEEecCCCCCCC
Confidence            4799999999999886543235689999999999999999999999999999876544443

>KOG0022|consensus

Probab=99.48  E-value=3.6e-14  Score=84.92  Aligned_cols=61  Identities=39%  Similarity=0.596  Sum_probs=53.6

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCccc
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGY   62 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~   62 (64)
                      .++++|++|.+..++..+ ...+|.++|||.+|+|+++|+.|+.+++||+|+.+..+.||.+
T Consensus        40 ~~t~vCHTD~~~~~g~~~-~~~fP~IlGHEaaGIVESvGegV~~vk~GD~Viplf~p~CgeC  100 (375)
T KOG0022|consen   40 LATGVCHTDAYVWSGKDP-EGLFPVILGHEAAGIVESVGEGVTTVKPGDHVIPLFTPQCGEC  100 (375)
T ss_pred             EEEeeccccceeecCCCc-cccCceEecccceeEEEEecCCccccCCCCEEeeccccCCCCc
Confidence            378999999999998754 3468999999999999999999999999999999988766654

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=99.43  E-value=6.8e-13  Score=80.09  Aligned_cols=59  Identities=41%  Similarity=0.615  Sum_probs=49.2

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCc
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG   60 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G   60 (64)
                      +++++|++|++...+.++. ..+|.++|||++|+|+++|+++++|++||+|++.....||
T Consensus        34 ~a~gi~~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg   92 (368)
T TIGR02818        34 VATGVCHTDAFTLSGADPE-GVFPVILGHEGAGIVEAVGEGVTSVKVGDHVIPLYTAECG   92 (368)
T ss_pred             EEecccHHHHHHhcCCCCC-CCCCeeeccccEEEEEEECCCCccCCCCCEEEEcCCCCCC
Confidence            4789999999998886543 2568999999999999999999999999999886543333

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=99.41  E-value=7.9e-13  Score=79.75  Aligned_cols=52  Identities=29%  Similarity=0.475  Sum_probs=45.2

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG   53 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~   53 (64)
                      +++++|++|++.+.+.++. ..+|.++|||++|+|+++|+++++|++||+|+.
T Consensus        45 ~~~gic~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~vG~~v~~~~vGdrV~~   96 (360)
T PLN02586         45 LYCGVCHSDLHTIKNEWGF-TRYPIVPGHEIVGIVTKLGKNVKKFKEGDRVGV   96 (360)
T ss_pred             EEecCChhhHhhhcCCcCC-CCCCccCCcceeEEEEEECCCCCccCCCCEEEE
Confidence            4789999999998876542 256889999999999999999999999999974

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.41  E-value=8.1e-13  Score=78.24  Aligned_cols=63  Identities=32%  Similarity=0.424  Sum_probs=49.0

Q ss_pred             CeeeeC-HHHHHHHhCCCCCC--CCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC-------CCcccCC
Q psy3510           1 MAAGIN-PVETYIRSGQYPNL--PDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL-------GKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~-~~D~~~~~~~~~~~--~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~-------~~G~~ae   64 (64)
                      +++++| .+|++...|.++..  ..+|.++|||++|+|+++|+++ +|++||+|+.....       ..|+|+|
T Consensus        33 ~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~~~vGdrV~~~~~~c~~~~~~~~G~~ae  105 (308)
T TIGR01202        33 WYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-GFRPGDRVFVPGSNCYEDVRGLFGGASK  105 (308)
T ss_pred             EEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-CCCCCCEEEEeCccccccccccCCcccc
Confidence            478997 59998888865432  2468999999999999999998 69999999874311       1477775

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=99.41  E-value=1.1e-12  Score=79.13  Aligned_cols=59  Identities=41%  Similarity=0.597  Sum_probs=49.3

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCc
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG   60 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G   60 (64)
                      +++++|++|++...+.++. ..+|.++|||++|+|+++|+++++|++||+|++.....||
T Consensus        35 ~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg   93 (368)
T cd08300          35 LATGVCHTDAYTLSGADPE-GLFPVILGHEGAGIVESVGEGVTSVKPGDHVIPLYTPECG   93 (368)
T ss_pred             EEEEechhhHHHhcCCCcc-CCCCceeccceeEEEEEeCCCCccCCCCCEEEEcCCCCCC
Confidence            4789999999998886543 2578899999999999999999999999999987443343

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=99.41  E-value=5.8e-13  Score=79.75  Aligned_cols=53  Identities=28%  Similarity=0.300  Sum_probs=43.7

Q ss_pred             CeeeeCHHHHHHHhCCCCC---CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPN---LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~---~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +++|||++|++.+.|.+..   ...+|.++|||++|+|+++|.+  .|++||+|+...
T Consensus        33 ~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--~~~vGdrV~~~~   88 (341)
T cd08237          33 TYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--TYKVGTKVVMVP   88 (341)
T ss_pred             EEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--ccCCCCEEEECC
Confidence            4899999999999886431   1246899999999999998764  799999998754

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08230 glucose_DH Glucose dehydrogenase

Probab=99.40  E-value=8.6e-13  Score=79.10  Aligned_cols=54  Identities=33%  Similarity=0.546  Sum_probs=45.7

Q ss_pred             CeeeeCHHHHHHHhCCCCCCC--CCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLP--DLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~--~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +|+++|++|++.+.|.++..+  .+|.++|||++|+|+++|++ +.|++||+|+...
T Consensus        33 ~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~vGdrV~~~~   88 (355)
T cd08230          33 LEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLSPGDLVVPTV   88 (355)
T ss_pred             EEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCCCCCEEEecc
Confidence            489999999999998653221  35789999999999999999 9999999998764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=99.40  E-value=1.2e-12  Score=79.02  Aligned_cols=53  Identities=40%  Similarity=0.616  Sum_probs=46.5

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +++++|++|++.+.+.++.  .+|.++|||++|+|+++|++++++++||+|++..
T Consensus        41 ~~~gi~~~D~~~~~g~~~~--~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~   93 (371)
T cd08281          41 AAAGLCHSDLSVINGDRPR--PLPMALGHEAAGVVVEVGEGVTDLEVGDHVVLVF   93 (371)
T ss_pred             EEEeeCccchHhhcCCCCC--CCCccCCccceeEEEEeCCCCCcCCCCCEEEEcc
Confidence            4789999999999886542  4688999999999999999999999999998754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.39  E-value=1.5e-12  Score=77.03  Aligned_cols=63  Identities=33%  Similarity=0.342  Sum_probs=50.9

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCC-CCCCCEEEEecCCCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH-FKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~-~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      +++++|++|++...+.++....+|.++|||++|+|+++|+++++ |++||+|++.... .|+|+|
T Consensus        38 ~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~vGd~V~~~~~~-~g~~a~  101 (324)
T cd08291          38 EAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPLAQSLIGKRVAFLAGS-YGTYAE  101 (324)
T ss_pred             EEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCccccCCCCCEEEecCCC-CCcchh
Confidence            37899999999988866433356889999999999999999996 9999999986531 266654

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=99.39  E-value=1.6e-12  Score=78.29  Aligned_cols=59  Identities=32%  Similarity=0.482  Sum_probs=48.9

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCc
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG   60 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G   60 (64)
                      +++++|++|++...+.++ ...+|.++|||++|+|+++|+++++|++||+|++.....||
T Consensus        35 ~a~gi~~~D~~~~~g~~~-~~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~c~   93 (369)
T cd08301          35 LHTSLCHTDVYFWEAKGQ-TPLFPRILGHEAAGIVESVGEGVTDLKPGDHVLPVFTGECK   93 (369)
T ss_pred             EEEeeCchhHHHhcCCCC-CCCCCcccccccceEEEEeCCCCCccccCCEEEEccCCCCC
Confidence            378999999999888654 23568999999999999999999999999999987543333

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=99.38  E-value=2e-12  Score=78.58  Aligned_cols=52  Identities=29%  Similarity=0.448  Sum_probs=45.1

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG   53 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~   53 (64)
                      +++++|++|+++..+.++. ..+|.++|||++|+|+++|+++++|++||+|..
T Consensus        39 ~a~gic~sD~~~~~G~~~~-~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdrV~~   90 (375)
T PLN02178         39 LFCGVCHSDLHTIKNHWGF-SRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGV   90 (375)
T ss_pred             EEEcCchHHHHHhcCCCCC-CCCCcccCceeeEEEEEECCCCCccCCCCEEEE
Confidence            4789999999999886532 246889999999999999999999999999974

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=99.38  E-value=2.2e-12  Score=77.53  Aligned_cols=53  Identities=34%  Similarity=0.548  Sum_probs=46.0

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +++++|++|++...+.++.  .+|.++|||++|+|+++|+++++|++||+|++..
T Consensus        34 ~~~gi~~~D~~~~~g~~~~--~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~   86 (358)
T TIGR03451        34 QACGVCHTDLHYREGGIND--EFPFLLGHEAAGVVEAVGEGVTDVAPGDYVVLNW   86 (358)
T ss_pred             EEEeecHHHHHHhcCCccc--cCCcccccceEEEEEEeCCCCcccCCCCEEEEcc
Confidence            3789999999998886432  4688999999999999999999999999998743

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=99.37  E-value=2.2e-12  Score=76.64  Aligned_cols=55  Identities=31%  Similarity=0.376  Sum_probs=45.8

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +++++|++|++...+.+.....+|.++|||++|+|+++|++++.+++||+|+...
T Consensus        32 ~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~   86 (339)
T cd08239          32 KASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVGDRVMVYH   86 (339)
T ss_pred             EEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCCCEEEECC
Confidence            3789999999988765432123578999999999999999999999999999865

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=99.36  E-value=2.3e-12  Score=77.90  Aligned_cols=59  Identities=41%  Similarity=0.503  Sum_probs=48.3

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCc-ccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcc
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPA-ILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG   61 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~-~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~   61 (64)
                      +++++|.+|++.+.+..+.. ..+. ++|||++|+|+++| .++.+++||+|...+...||.
T Consensus        33 ~~~gICGSDlh~~~g~~~~~-~~~~~i~GHE~~G~V~evG-~~~~~~~GdrVvv~~~~~Cg~   92 (350)
T COG1063          33 TATGICGSDLHIYRGGEPFV-PPGDIILGHEFVGEVVEVG-VVRGFKVGDRVVVEPNIPCGH   92 (350)
T ss_pred             EEEeEchhhhhhccCCCCCC-CCCCcccCccceEEEEEec-cccCCCCCCEEEECCCcCCCC
Confidence            47899999999999865432 3334 99999999999999 777899999999987655654

>KOG0024|consensus

Probab=99.34  E-value=6.7e-13  Score=79.60  Aligned_cols=57  Identities=44%  Similarity=0.524  Sum_probs=47.9

Q ss_pred             CeeeeCHHHHHHHhCCCCCC--CCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC
Q psy3510           1 MAAGINPVETYIRSGQYPNL--PDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL   57 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~--~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~   57 (64)
                      ++++||.+|++.+.......  .+.|+++|||.+|+|.++|+.|+++++||||..-+..
T Consensus        37 ~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk~LkVGDrVaiEpg~   95 (354)
T KOG0024|consen   37 KAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVKHLKVGDRVAIEPGL   95 (354)
T ss_pred             eeEEecCccchhhccCCcCccccccccccccccccchhhhcccccccccCCeEEecCCC
Confidence            47899999999887643221  2579999999999999999999999999999877653

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=99.34  E-value=5.7e-12  Score=75.93  Aligned_cols=54  Identities=39%  Similarity=0.549  Sum_probs=47.1

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI   56 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~   56 (64)
                      +++++|++|++...+.++  ..+|.++|||++|+|+++|++++++++||+|++...
T Consensus        35 ~~~gi~~sD~~~~~g~~~--~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~   88 (365)
T cd08277          35 LATSVCHTDILAIEGFKA--TLFPVILGHEGAGIVESVGEGVTNLKPGDKVIPLFI   88 (365)
T ss_pred             EEEeechhhHHHhcCCCC--CCCCeecccceeEEEEeeCCCCccCCCCCEEEECCC
Confidence            478999999999888654  256889999999999999999999999999998654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=99.33  E-value=6.6e-12  Score=74.98  Aligned_cols=52  Identities=29%  Similarity=0.351  Sum_probs=45.0

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG   53 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~   53 (64)
                      +++++|++|++...+.++. ..+|.++|||++|+|+++|+++++|++||+|+.
T Consensus        35 ~~~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~   86 (329)
T TIGR02822        35 RACGVCRTDLHVSEGDLPV-HRPRVTPGHEVVGEVAGRGADAGGFAVGDRVGI   86 (329)
T ss_pred             EEEeecchhHHHHcCCCCC-CCCCccCCcceEEEEEEECCCCcccCCCCEEEE
Confidence            4789999999999886542 234789999999999999999999999999975

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=99.31  E-value=6.8e-12  Score=75.04  Aligned_cols=52  Identities=25%  Similarity=0.301  Sum_probs=42.0

Q ss_pred             CeeeeCHHHHHHHh-CCCCC-CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRS-GQYPN-LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~-~~~~~-~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      +++++|++|++... +.++. ...+|.++|||++|+|+++  ++++|++||+|+..
T Consensus        35 ~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~~~~vGdrV~~~   88 (343)
T PRK09880         35 TRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSGLKEGQTVAIN   88 (343)
T ss_pred             EEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCccCCCCCEEEEC
Confidence            47999999998875 33221 1246899999999999999  78899999999865

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.30  E-value=1.2e-11  Score=72.77  Aligned_cols=61  Identities=36%  Similarity=0.667  Sum_probs=49.7

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYS   63 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~a   63 (64)
                      +++++|+.|+....+.++.....|.++|+|++|+|+++|++++.+++||+|+++..  .|+|+
T Consensus        36 ~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~--~g~~~   96 (324)
T cd08292          36 TLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGLQVGQRVAVAPV--HGTWA   96 (324)
T ss_pred             EEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCCCCCCEEEeccC--CCcce
Confidence            36899999999988765432345789999999999999999999999999999863  35554

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PLN02827 Alcohol dehydrogenase-like

Probab=99.30  E-value=1e-11  Score=75.39  Aligned_cols=56  Identities=32%  Similarity=0.472  Sum_probs=46.8

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCc
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG   60 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G   60 (64)
                      +++++|++|++.+.+..    .+|.++|||++|+|+++|+++++|++||+|+......||
T Consensus        45 ~~~gic~sD~~~~~g~~----~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg  100 (378)
T PLN02827         45 VSTSLCRSDLSAWESQA----LFPRIFGHEASGIVESIGEGVTEFEKGDHVLTVFTGECG  100 (378)
T ss_pred             EEEecChhHHHHhcCCC----CCCeeecccceEEEEEcCCCCcccCCCCEEEEecCCCCC
Confidence            37899999999877632    357899999999999999999999999999987643343

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=99.28  E-value=1.8e-11  Score=73.68  Aligned_cols=52  Identities=33%  Similarity=0.396  Sum_probs=44.9

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG   53 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~   53 (64)
                      +++++|++|++.+.+.++. ..+|.++|||++|+|+++|+++++|++||+|+.
T Consensus        42 ~a~gi~~~D~~~~~g~~~~-~~~p~i~G~E~~G~Vv~vG~~v~~~~~Gd~V~~   93 (357)
T PLN02514         42 IYCGICHTDLHQIKNDLGM-SNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGV   93 (357)
T ss_pred             EEeccChHHHHhhcCCcCc-CCCCccCCceeeEEEEEECCCcccccCCCEEEE
Confidence            4789999999998876532 246889999999999999999999999999974

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.26  E-value=1.4e-11  Score=75.45  Aligned_cols=55  Identities=22%  Similarity=0.403  Sum_probs=43.7

Q ss_pred             CeeeeCHHHHHHH-hCCC-CCC----CCCCcccCccceEEEEEeCCCCC-CCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIR-SGQY-PNL----PDLPAILGTEVSGIVEEVGQGVK-HFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~-~~~~-~~~----~~~~~~~G~e~~G~V~~vg~~v~-~~~~Gd~V~~~~   55 (64)
                      +++++|++|++.. .+.+ +..    ..+|.++|||++|+|+++|++++ +|++||+|+...
T Consensus        34 ~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~vGdrV~~~~   95 (410)
T cd08238          34 ISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGKKWQGKYKPGQRFVIQP   95 (410)
T ss_pred             EEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCCCccCCCCCCCEEEEcC
Confidence            4789999999876 4532 110    13678999999999999999998 699999998864

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.26  E-value=3.3e-11  Score=71.32  Aligned_cols=63  Identities=35%  Similarity=0.564  Sum_probs=50.5

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC-CCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL-GKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~-~~G~~ae   64 (64)
                      +++++|+.|++.+.+..+. ..+|.++|+|++|+|+++|+++++|++||+|+++... ..|+|++
T Consensus        37 ~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~~  100 (336)
T TIGR02817        37 KAISVNPVDTKVRARMAPE-AGQPKILGWDAAGVVVAVGDEVTLFKPGDEVWYAGDIDRPGSNAE  100 (336)
T ss_pred             EEEEcChHHHHHHcCCCCC-CCCCcccceeeEEEEEEeCCCCCCCCCCCEEEEcCCCCCCCcccc
Confidence            3789999999988775432 2467899999999999999999999999999987521 2477664

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.21  E-value=6.1e-11  Score=67.74  Aligned_cols=56  Identities=50%  Similarity=0.746  Sum_probs=47.6

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI   56 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~   56 (64)
                      +++++|+.|++...+.++.....|.++|+|++|+|+++|++++.|++||+|++...
T Consensus         7 ~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~   62 (271)
T cd05188           7 EAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPN   62 (271)
T ss_pred             EEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCC
Confidence            37899999999988865422345789999999999999999999999999999863

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK10083 putative oxidoreductase; Provisional

Probab=99.21  E-value=5.6e-11  Score=70.56  Aligned_cols=53  Identities=30%  Similarity=0.582  Sum_probs=45.4

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      .++++|++|++...+.++. ..+|.++|+|++|+|+++|++++.+++||+|+..
T Consensus        32 ~~~gi~~~d~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~   84 (339)
T PRK10083         32 KLAGICGSDSHIYRGHNPF-AKYPRVIGHEFFGVIDAVGEGVDAARIGERVAVD   84 (339)
T ss_pred             EEEEEcccchHHHcCCCCc-CCCCcccccceEEEEEEECCCCccCCCCCEEEEc
Confidence            3789999999988876543 2468899999999999999999999999999853

>cd08251 polyketide_synthase polyketide synthase

Probab=99.21  E-value=9.5e-11  Score=67.85  Aligned_cols=62  Identities=34%  Similarity=0.499  Sum_probs=50.8

Q ss_pred             eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccC
Q psy3510           2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYS   63 (64)
Q Consensus         2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~a   63 (64)
                      ++++|+.|++...+.++....+|.++|+|++|+|+++|++++++++||+|+++.....|+|+
T Consensus        16 ~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~g~~~   77 (303)
T cd08251          16 AFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGESMGGHA   77 (303)
T ss_pred             EeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCCCCccee
Confidence            68899999999887654333567899999999999999999999999999987643346655

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=99.20  E-value=6.6e-11  Score=70.95  Aligned_cols=53  Identities=25%  Similarity=0.339  Sum_probs=42.6

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      +++++|++|++...+.+.....+|.++|||++|+|+++|++++.+ +||+|+..
T Consensus        31 ~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV~~~   83 (349)
T TIGR03201        31 AGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAVIVP   83 (349)
T ss_pred             EEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEEEEC
Confidence            378999999988644322122468899999999999999999887 99999874

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=99.18  E-value=7.8e-11  Score=70.63  Aligned_cols=54  Identities=37%  Similarity=0.500  Sum_probs=46.6

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCC------CCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH------FKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~------~~~Gd~V~~~~   55 (64)
                      +++++|+.|++...+.++. ..+|.++|+|++|+|+++|++++.      |++||+|++..
T Consensus        33 ~a~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~~~~Gd~V~~~~   92 (361)
T cd08231          33 RLAGVCGSDVHTVAGRRPR-VPLPIILGHEGVGRVVALGGGVTTDVAGEPLKVGDRVTWSV   92 (361)
T ss_pred             EEEeecCccHHHhcCCCCC-CCCCcccccCCceEEEEeCCCccccccCCccCCCCEEEEcc
Confidence            3789999999999886642 356889999999999999999986      99999999873

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=99.18  E-value=1.3e-10  Score=69.51  Aligned_cols=53  Identities=32%  Similarity=0.397  Sum_probs=42.8

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +++++|++|++.......  ..+|.++|||++|+|+++|+++++|++||+|++..
T Consensus        33 ~~~gi~~~D~~~~~~~~~--~~~p~i~G~e~~G~V~~vG~~v~~~~vGd~V~~~~   85 (347)
T PRK10309         33 ASSGLCGSDIPRIFKNGA--HYYPITLGHEFSGYVEAVGSGVDDLHPGDAVACVP   85 (347)
T ss_pred             EEEEEchhcHHHHhCCCC--CCCCcccccceEEEEEEeCCCCCCCCCCCEEEECC
Confidence            378999999875432111  13578999999999999999999999999999864

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.18  E-value=1.4e-10  Score=68.42  Aligned_cols=56  Identities=36%  Similarity=0.444  Sum_probs=47.6

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI   56 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~   56 (64)
                      +++++|+.|++...+.++....+|.++|+|++|+|+++|++++.+++||+|+++..
T Consensus        38 ~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~   93 (329)
T cd08250          38 RFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVTDFKVGDAVATMSF   93 (329)
T ss_pred             EEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCCCCCCCCEEEEecC
Confidence            37899999999888765433356889999999999999999999999999998754

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=99.17  E-value=9.3e-11  Score=71.05  Aligned_cols=54  Identities=43%  Similarity=0.652  Sum_probs=46.7

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI   56 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~   56 (64)
                      +++++|++|++...+.++.  .+|.++|||++|+|+++|++++.+++||+|+++..
T Consensus        40 ~~~gi~~~D~~~~~g~~~~--~~p~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~   93 (373)
T cd08299          40 VATGICRSDDHVVSGKLVT--PFPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFV   93 (373)
T ss_pred             EEEEcCcccHHHhcCCCCC--CCCccccccceEEEEEeCCCCccCCCCCEEEECCC
Confidence            3789999999998886532  46789999999999999999999999999998753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.17  E-value=9.5e-11  Score=69.60  Aligned_cols=53  Identities=38%  Similarity=0.443  Sum_probs=46.3

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      .++++|+.|+....+.++. ..+|.++|+|++|+|+++|++++++++||+|++.
T Consensus        33 ~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~   85 (347)
T cd05278          33 TATSICGSDLHIYRGGVPG-AKHGMILGHEFVGEVVEVGSDVKRLKPGDRVSVP   85 (347)
T ss_pred             EEEEechhhHHHHcCCCCC-CCCCceeccceEEEEEEECCCccccCCCCEEEec
Confidence            3789999999998886653 3568899999999999999999999999999984

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.17  E-value=1.4e-10  Score=70.46  Aligned_cols=55  Identities=36%  Similarity=0.484  Sum_probs=47.7

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI   56 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~   56 (64)
                      .++++|++|+....+.++. .++|.++|+|++|+|+++|++++++++||+|++...
T Consensus        33 ~~~~i~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~   87 (386)
T cd08283          33 TATAICGSDLHLYHGYIPG-MKKGDILGHEFMGVVEEVGPEVRNLKVGDRVVVPFT   87 (386)
T ss_pred             EEEecchhhhhhhcCCCCC-CCCCccccccceEEEEEeCCCCCCCCCCCEEEEcCc
Confidence            3789999999999887654 246889999999999999999999999999998753

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.16  E-value=1.4e-10  Score=68.76  Aligned_cols=61  Identities=43%  Similarity=0.562  Sum_probs=48.5

Q ss_pred             eeeeCHHHHHHHhCCCCCCCC----CCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccC
Q psy3510           2 AAGINPVETYIRSGQYPNLPD----LPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYS   63 (64)
Q Consensus         2 a~~l~~~D~~~~~~~~~~~~~----~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~a   63 (64)
                      ++++|+.|+....+.++....    .|.++|+|++|+|+++|+++..|++||+|++... ..|+|+
T Consensus        38 ~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~-~~g~~~  102 (341)
T cd08290          38 AAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGSGVKSLKPGDWVIPLRP-GLGTWR  102 (341)
T ss_pred             ecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCCCCCCCCCCCEEEecCC-CCccch
Confidence            689999999998876542222    5678999999999999999999999999998753 135554

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.16  E-value=1.1e-10  Score=69.51  Aligned_cols=54  Identities=15%  Similarity=0.062  Sum_probs=41.3

Q ss_pred             CeeeeCHHHHHHHhCC-C-CCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQ-Y-PNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~-~-~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      +|++||+.|....... . .....+|.++|+|++|+|+++|+++++|++||+|++.
T Consensus        44 ~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~   99 (345)
T cd08293          44 LYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSF   99 (345)
T ss_pred             EEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEec
Confidence            4899999996433211 0 1112457889999999999999999999999999875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.15  E-value=1.9e-10  Score=68.23  Aligned_cols=55  Identities=38%  Similarity=0.530  Sum_probs=46.5

Q ss_pred             CeeeeCHHHHHHHhCCCCC--CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~--~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +++++|+.|++...+.++.  ...+|.++|+|++|+|+++|+++..|++||+|+++.
T Consensus        33 ~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~   89 (340)
T cd05284          33 GGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLKEGDPVVVHP   89 (340)
T ss_pred             EEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCcCCCEEEEcC
Confidence            3689999999998876542  224578999999999999999999999999999875

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=99.15  E-value=1.8e-10  Score=68.85  Aligned_cols=54  Identities=37%  Similarity=0.464  Sum_probs=45.9

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +++++|++|++...+.++. ...|.++|+|++|+|+++|++++++++||+|++..
T Consensus        32 ~a~~i~~~d~~~~~g~~~~-~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~   85 (351)
T cd08285          32 TAVAPCTSDVHTVWGGAPG-ERHGMILGHEAVGVVEEVGSEVKDFKPGDRVIVPA   85 (351)
T ss_pred             EEEEechhhHHHhcCCCCC-CCCCcccCcceEEEEEEecCCcCccCCCCEEEEcC
Confidence            3789999999988775432 24578999999999999999999999999999853

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.14  E-value=2.3e-10  Score=68.01  Aligned_cols=53  Identities=32%  Similarity=0.624  Sum_probs=44.7

Q ss_pred             eeeeCHHHHHHHhCCCCC-------------------CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           2 AAGINPVETYIRSGQYPN-------------------LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         2 a~~l~~~D~~~~~~~~~~-------------------~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      ++++|++|+++..+.++.                   ....|.++|||++|+|+++|++++.|++||+|++.
T Consensus        37 ~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~  108 (350)
T cd08274          37 ACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRIQGADIVGRVVAVGEGVDTARIGERVLVD  108 (350)
T ss_pred             eccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcccCCcceEEEEEeCCCCCCCCCCCEEEEe
Confidence            689999999988775431                   12457899999999999999999999999999985

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.12  E-value=3.9e-10  Score=66.46  Aligned_cols=55  Identities=36%  Similarity=0.675  Sum_probs=46.7

Q ss_pred             eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510           2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI   56 (64)
Q Consensus         2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~   56 (64)
                      ++++|+.|+.+..+.++....+|.++|+|++|+|+.+|+++..|++||+|+++..
T Consensus        36 ~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~   90 (331)
T cd08273          36 ASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFEVGDRVAALTR   90 (331)
T ss_pred             EEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCCCCCEEEEeCC
Confidence            6899999999887765432246778999999999999999999999999999864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.11  E-value=4.2e-10  Score=66.26  Aligned_cols=60  Identities=50%  Similarity=0.824  Sum_probs=48.5

Q ss_pred             eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccC
Q psy3510           2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYS   63 (64)
Q Consensus         2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~a   63 (64)
                      ++++|+.|+....+.++.....+.++|+|++|+|+++|++++.+++||+|+++..  .|+|+
T Consensus        37 ~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~--~g~~~   96 (334)
T PTZ00354         37 AAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRFKEGDRVMALLP--GGGYA   96 (334)
T ss_pred             EEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCCCCCCEEEEecC--CCcee
Confidence            6899999998887755433345678999999999999999999999999998753  35554

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=99.11  E-value=3.1e-10  Score=67.87  Aligned_cols=55  Identities=40%  Similarity=0.526  Sum_probs=43.4

Q ss_pred             CeeeeCHHHHHHHhCCC---CC-------CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQY---PN-------LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~---~~-------~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +++++|+.|++...+..   +.       ....|.++|+|++|+|+++|+++++|++||+|++..
T Consensus        32 ~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~   96 (351)
T cd08233          32 AWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEP   96 (351)
T ss_pred             EEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEeCCCCCCCCCCCEEEECC
Confidence            37899999988765321   10       012578999999999999999999999999999753

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.10  E-value=3.2e-10  Score=67.36  Aligned_cols=54  Identities=43%  Similarity=0.612  Sum_probs=45.5

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +++++|+.|+....+.++ ....|.++|+|++|+|+++|++++.+++||+|+++.
T Consensus        32 ~~~~l~~~d~~~~~g~~~-~~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd~V~~~~   85 (343)
T cd08235          32 RACGICGTDVKKIRGGHT-DLKPPRILGHEIAGEIVEVGDGVTGFKVGDRVFVAP   85 (343)
T ss_pred             EEeeeccccHHHHcCCCc-cCCCCcccccceEEEEEeeCCCCCCCCCCCEEEEcc
Confidence            378999999998877553 123467899999999999999999999999999873

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.10  E-value=6e-10  Score=67.43  Aligned_cols=52  Identities=33%  Similarity=0.448  Sum_probs=45.6

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      +++++|+.|++...+.++.  .+|.++|+|++|+|+++|++++.+++||+|++.
T Consensus        33 ~a~~i~~~D~~~~~g~~~~--~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~   84 (375)
T cd08282          33 TTTAICGSDLHMYRGRTGA--EPGLVLGHEAMGEVEEVGSAVESLKVGDRVVVP   84 (375)
T ss_pred             EEEeeCHHHHHHHcCCCCC--CCCceeccccEEEEEEeCCCCCcCCCCCEEEEe
Confidence            4789999999999886542  468899999999999999999999999999874

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=99.10  E-value=2.4e-10  Score=68.95  Aligned_cols=51  Identities=43%  Similarity=0.697  Sum_probs=44.9

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG   53 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~   53 (64)
                      .++++|++|++...+.++.  .+|.++|+|++|+|+++|+++..+++||+|+.
T Consensus        35 ~a~gi~~~d~~~~~g~~~~--~~p~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~   85 (365)
T cd08278          35 VATGICHTDLVVRDGGLPT--PLPAVLGHEGAGVVEAVGSAVTGLKPGDHVVL   85 (365)
T ss_pred             EEeecCcccHHHhcCCCCC--CCCcccccceeEEEEEeCCCcccCCCCCEEEE
Confidence            3789999999998886542  46789999999999999999999999999996

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.09  E-value=4.5e-10  Score=65.97  Aligned_cols=55  Identities=44%  Similarity=0.649  Sum_probs=46.6

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +++++|+.|.....+.+.....+|.++|+|++|+|+++|++++.+++||+|+++.
T Consensus        34 ~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~   88 (323)
T cd05282          34 LAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLG   88 (323)
T ss_pred             EeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeC
Confidence            3688999999888775543334678999999999999999999999999999986

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>smart00829 PKS_ER Enoylreductase

Probab=99.09  E-value=4.4e-10  Score=64.43  Aligned_cols=56  Identities=41%  Similarity=0.674  Sum_probs=47.0

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYS   63 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~a   63 (64)
                      +++++|+.|++...+.++    .+.++|+|++|+|+++|+.++++++||+|+++..   |+|+
T Consensus         5 ~~~~i~~~d~~~~~g~~~----~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~---g~~~   60 (288)
T smart00829        5 RAAGLNFRDVLIALGLLP----GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLAP---GSFA   60 (288)
T ss_pred             EEEecCHHHHHHhcCCCC----CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEcC---Ccee
Confidence            378999999998877543    3578999999999999999999999999999864   5554

Enoylreductase in Polyketide synthases.

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.08  E-value=6.1e-10  Score=64.69  Aligned_cols=61  Identities=46%  Similarity=0.761  Sum_probs=49.0

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYS   63 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~a   63 (64)
                      +++++|+.|+....+.++.....|.++|+|++|+|+++|+++..+++||+|+++..  .|+|+
T Consensus        35 ~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~~~--~g~~~   95 (323)
T cd05276          35 AAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWKVGDRVCALLA--GGGYA   95 (323)
T ss_pred             EEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCCCCCEEEEecC--CCcee
Confidence            36899999998887755433346789999999999999999999999999998854  34443

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.08  E-value=5.8e-10  Score=66.44  Aligned_cols=54  Identities=39%  Similarity=0.557  Sum_probs=46.3

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +++++|+.|+....+.++.. .+|.++|+|++|+|+++|++++++++||+|++..
T Consensus        33 ~a~~i~~~d~~~~~g~~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~   86 (345)
T cd08286          33 LKTTICGTDLHILKGDVPTV-TPGRILGHEGVGVVEEVGSAVTNFKVGDRVLISC   86 (345)
T ss_pred             EEeeecchhhHHHcCCCCCC-CCCceecccceEEEEEeccCccccCCCCEEEECC
Confidence            37899999999988865432 3478999999999999999999999999999864

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.08  E-value=5.1e-10  Score=65.85  Aligned_cols=54  Identities=43%  Similarity=0.659  Sum_probs=46.5

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +++++|+.|++...+.++. ...|.++|+|++|+|+++|++++.+++||+|+++.
T Consensus        33 ~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~   86 (332)
T cd08259          33 KAAGVCYRDLLFWKGFFPR-GKYPLILGHEIVGTVEEVGEGVERFKPGDRVILYY   86 (332)
T ss_pred             EEEecchhhhHHhcCCCCC-CCCCeeccccceEEEEEECCCCccCCCCCEEEECC
Confidence            3689999999998886543 24578999999999999999999999999999975

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=99.08  E-value=5e-10  Score=67.55  Aligned_cols=53  Identities=42%  Similarity=0.671  Sum_probs=45.6

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      .++++|+.|++...+.++.  .+|.++|+|++|+|+++|++++.+++||+|++..
T Consensus        33 ~~~~i~~~d~~~~~g~~~~--~~~~i~g~e~~G~V~~vG~~v~~~~~Gd~Vv~~~   85 (365)
T cd05279          33 VATGVCHTDLHVIDGKLPT--PLPVILGHEGAGIVESIGPGVTTLKPGDKVIPLF   85 (365)
T ss_pred             EEeeecchhHHHhcCCCCC--CCCcccccceeEEEEEeCCCcccCCCCCEEEEcC
Confidence            3689999999988876542  4578999999999999999999999999999863

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.07  E-value=4.3e-10  Score=66.92  Aligned_cols=51  Identities=35%  Similarity=0.515  Sum_probs=44.4

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG   53 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~   53 (64)
                      +++++|++|+....+.++.  ..|.++|||++|+|+++|+++..+++||+|++
T Consensus        33 ~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~   83 (345)
T cd08287          33 VATCVCGSDLWPYRGVSPT--RAPAPIGHEFVGVVEEVGSEVTSVKPGDFVIA   83 (345)
T ss_pred             eeeeecccchhhhcCCCCC--CCCcccccceEEEEEEeCCCCCccCCCCEEEe
Confidence            3689999999888876542  45789999999999999999999999999987

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.07  E-value=6.9e-10  Score=63.54  Aligned_cols=56  Identities=43%  Similarity=0.672  Sum_probs=47.4

Q ss_pred             eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccC
Q psy3510           2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYS   63 (64)
Q Consensus         2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~a   63 (64)
                      ++++|+.|++...+.++   .+|.++|+|++|+|+++|++++++++||+|+++..   |+|+
T Consensus         9 ~~~~~~~d~~~~~g~~~---~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~~---g~~~   64 (293)
T cd05195           9 AAGLNFRDVLVALGLLP---GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLAP---GAFA   64 (293)
T ss_pred             EEecCHHHHHHHhCCCC---CCCCccceeeeEEEEeecCCccCCCCCCEEEEEec---Cccc
Confidence            68999999999887542   35788999999999999999999999999999864   5554

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.07  E-value=5.4e-10  Score=65.05  Aligned_cols=55  Identities=53%  Similarity=0.989  Sum_probs=46.9

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +++++|+.|+....+.++.....|.++|+|++|+|+++|+++.+|++||+|+++.
T Consensus        35 ~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~v~~~~   89 (325)
T cd08253          35 HASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLKVGDRVWLTN   89 (325)
T ss_pred             EEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCCCCCEEEEec
Confidence            3689999999888776543335678999999999999999999999999999986

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.06  E-value=8e-10  Score=64.91  Aligned_cols=62  Identities=42%  Similarity=0.687  Sum_probs=48.4

Q ss_pred             eeeeCHHHHHHHhCCCCC--CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccC
Q psy3510           2 AAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYS   63 (64)
Q Consensus         2 a~~l~~~D~~~~~~~~~~--~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~a   63 (64)
                      ++++|+.|+....+..+.  ....|.++|+|++|+|+++|++++.+++||+|+++.....|+|+
T Consensus        36 ~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~g~~~   99 (324)
T cd08244          36 AAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDPAWLGRRVVAHTGRAGGGYA   99 (324)
T ss_pred             EEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCCCCCCCEEEEccCCCCceee
Confidence            689999999988775432  12456789999999999999999999999999998621235554

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.06  E-value=6.9e-10  Score=65.98  Aligned_cols=52  Identities=40%  Similarity=0.520  Sum_probs=44.8

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      .++++|+.|+..+.+.++.  ..|.++|+|++|+|+++|++++.|++||+|+++
T Consensus        32 ~~~~~n~~d~~~~~~~~~~--~~~~~~g~~~~G~V~~~g~~v~~~~~Gd~V~~~   83 (343)
T cd08236          32 KACGICGSDIPRYLGTGAY--HPPLVLGHEFSGTVEEVGSGVDDLAVGDRVAVN   83 (343)
T ss_pred             EEEEECccchHhhcCCCCC--CCCcccCcceEEEEEEECCCCCcCCCCCEEEEc
Confidence            3789999999988775422  356789999999999999999999999999997

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.05  E-value=8.7e-10  Score=66.38  Aligned_cols=54  Identities=44%  Similarity=0.647  Sum_probs=46.5

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI   56 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~   56 (64)
                      +++++|+.|+....+.++.  .+|.++|+|++|+|+++|++++.+++||+|++...
T Consensus        33 ~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~   86 (363)
T cd08279          33 AAAGLCHSDLHVVTGDLPA--PLPAVLGHEGAGVVEEVGPGVTGVKPGDHVVLSWI   86 (363)
T ss_pred             EEeecCcHHHHHhcCCCCC--CCCccccccceEEEEEeCCCccccCCCCEEEECCC
Confidence            3789999999988886542  46778999999999999999999999999998653

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.05  E-value=9.8e-10  Score=65.40  Aligned_cols=53  Identities=34%  Similarity=0.654  Sum_probs=45.0

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      +++++|+.|+....+.++. ..+|.++|+|++|+|+++|++++++++||+|++.
T Consensus        33 ~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~   85 (333)
T cd08296          33 EACGVCHSDAFVKEGAMPG-LSYPRVPGHEVVGRIDAVGEGVSRWKVGDRVGVG   85 (333)
T ss_pred             EEEecchHHHHHHhCCCCC-CCCCcccCcceeEEEEEECCCCccCCCCCEEEec
Confidence            3789999999988885532 2457899999999999999999999999999873

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.05  E-value=9.2e-10  Score=65.81  Aligned_cols=54  Identities=33%  Similarity=0.438  Sum_probs=43.9

Q ss_pred             CeeeeCHHHHHHHhCCCCC--------CCCCCcccCccceEEEEEeCCCCC--CCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPN--------LPDLPAILGTEVSGIVEEVGQGVK--HFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~--------~~~~~~~~G~e~~G~V~~vg~~v~--~~~~Gd~V~~~   54 (64)
                      +++++|+.|++...+.+..        ....|.++|+|++|+|+++|+.++  +|++||+|++.
T Consensus        32 ~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~~~Gd~V~~~   95 (350)
T cd08256          32 EACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGEGAEERGVKVGDRVISE   95 (350)
T ss_pred             EEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCCCcccCCCCCCCEEEEC
Confidence            3789999999988775311        013567899999999999999999  89999999973

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.04  E-value=8.3e-10  Score=65.74  Aligned_cols=54  Identities=33%  Similarity=0.453  Sum_probs=43.6

Q ss_pred             CeeeeCHHHHHHHhCCC-C-CCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQY-P-NLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~-~-~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      +++++|++|+.++.+.. . ....+|.++|+|++|+|+++|++++.+++||+|+++
T Consensus        33 ~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~   88 (341)
T PRK05396         33 KKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFKVGDRVSGE   88 (341)
T ss_pred             EEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCCCCCEEEEC
Confidence            37899999998766531 1 111356789999999999999999999999999987

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.04  E-value=9.9e-10  Score=65.61  Aligned_cols=55  Identities=38%  Similarity=0.534  Sum_probs=45.1

Q ss_pred             CeeeeCHHHHHHHhCCCCC-----------CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPN-----------LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~-----------~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +++++|++|++...+.++.           ....|.++|+|++|+|+++|++++.+++||+|+++.
T Consensus        33 ~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~   98 (350)
T cd08240          33 TACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVAVGPDAADVKVGDKVLVYP   98 (350)
T ss_pred             EEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEeeCCCCCCCCCCCEEEECC
Confidence            3789999999988775431           113457899999999999999999999999999873

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.04  E-value=7.3e-10  Score=65.85  Aligned_cols=55  Identities=27%  Similarity=0.366  Sum_probs=44.5

Q ss_pred             CeeeeCHHHHHHHhCCCC----------CCCCCCcccCccceEEEEEeCCCCCC-CCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYP----------NLPDLPAILGTEVSGIVEEVGQGVKH-FKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~----------~~~~~~~~~G~e~~G~V~~vg~~v~~-~~~Gd~V~~~~   55 (64)
                      +++++|+.|++...+...          .....|.++|+|++|+|+++|++++. |++||+|+++.
T Consensus        31 ~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~~Gd~V~~~~   96 (341)
T cd08262          31 LACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDYGPGTERKLKVGTRVTSLP   96 (341)
T ss_pred             EEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEeCCCCcCCCCCCCEEEecC
Confidence            378999999998877321          01134778999999999999999987 99999999984

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.04  E-value=1.4e-09  Score=66.12  Aligned_cols=53  Identities=38%  Similarity=0.705  Sum_probs=43.1

Q ss_pred             CeeeeCHHHHHHHhCC------CCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510           1 MAAGINPVETYIRSGQ------YPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG   53 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~------~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~   53 (64)
                      +++++|++|++...+.      ++....+|.++|+|++|+|+++|++++.|++||+|++
T Consensus        59 ~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~  117 (384)
T cd08265          59 KACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTA  117 (384)
T ss_pred             EEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCCCCCCCCCEEEE
Confidence            3789999999887631      1212245789999999999999999999999999986

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.04  E-value=1.2e-09  Score=64.71  Aligned_cols=51  Identities=37%  Similarity=0.563  Sum_probs=44.9

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG   53 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~   53 (64)
                      +++++|+.|+....+.++.  .+|.++|+|++|+|+.+|++++.+++||+|++
T Consensus        32 ~~~~l~~~d~~~~~g~~~~--~~p~~~g~~~~G~v~~vG~~v~~~~~Gd~V~~   82 (334)
T cd08234          32 AACGICGTDLHIYEGEFGA--APPLVPGHEFAGVVVAVGSKVTGFKVGDRVAV   82 (334)
T ss_pred             EEEeEchhhhHHhcCCCCC--CCCcccccceEEEEEEeCCCCCCCCCCCEEEE
Confidence            3789999999998886543  36789999999999999999999999999987

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.03  E-value=8.4e-10  Score=65.97  Aligned_cols=55  Identities=33%  Similarity=0.455  Sum_probs=43.7

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCC-CCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK-HFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~-~~~~Gd~V~~~~   55 (64)
                      +++++|+.|+....+........|.++|+|++|+|+++|++++ .|++||+|+++.
T Consensus        36 ~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~~Gd~V~~~~   91 (352)
T cd08247          36 HAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASEWKVGDEVCGIY   91 (352)
T ss_pred             EEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccCCCCCCEEEEee
Confidence            3789999999887542211112367899999999999999998 899999999875

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.03  E-value=1.1e-09  Score=65.17  Aligned_cols=63  Identities=37%  Similarity=0.669  Sum_probs=48.5

Q ss_pred             CeeeeCHHHHHHHhCCCCC--------------CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC-CCcccC
Q psy3510           1 MAAGINPVETYIRSGQYPN--------------LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL-GKGGYS   63 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~--------------~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~-~~G~~a   63 (64)
                      +++++|+.|+....+....              ....|.++|+|++|+|+++|++++++++||+|+++... ..|+|+
T Consensus        37 ~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~  114 (350)
T cd08248          37 HAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRDCSGVVVDIGSGVKSFEIGDEVWGAVPPWSQGTHA  114 (350)
T ss_pred             EEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecceeEEEEEecCCCcccCCCCCEEEEecCCCCCccce
Confidence            3789999999988763210              12457899999999999999999999999999987521 235554

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.03  E-value=1e-09  Score=65.20  Aligned_cols=53  Identities=43%  Similarity=0.611  Sum_probs=45.3

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      +++++|+.|+....+.++.. .+|.++|+|++|+|+++|++++.|++||+|++.
T Consensus        32 ~~~~l~~~d~~~~~~~~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~   84 (337)
T cd08261          32 KRVGICGSDLHIYHGRNPFA-SYPRILGHELSGEVVEVGEGVAGLKVGDRVVVD   84 (337)
T ss_pred             EEEeEcccChHHHcCCCCcC-CCCcccccccEEEEEEeCCCCCCCCCCCEEEEC
Confidence            37899999999988765432 457789999999999999999999999999984

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.03  E-value=1.1e-09  Score=65.22  Aligned_cols=52  Identities=31%  Similarity=0.456  Sum_probs=44.6

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG   53 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~   53 (64)
                      +++++|+.|++...+.++. ..+|.++|+|++|+|+++|+++++|++||+|+.
T Consensus        32 ~a~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~   83 (337)
T cd05283          32 TYCGVCHSDLHTLRNEWGP-TKYPLVPGHEIVGIVVAVGSKVTKFKVGDRVGV   83 (337)
T ss_pred             EEecccchHHHHhcCCcCC-CCCCcccCcceeeEEEEECCCCcccCCCCEEEE
Confidence            3689999999998876532 245889999999999999999999999999974

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.02  E-value=1.8e-09  Score=63.75  Aligned_cols=53  Identities=47%  Similarity=0.713  Sum_probs=45.6

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG   53 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~   53 (64)
                      +++++|+.|+....+.++.....|.++|+|++|+|+.+|++++.+++||+|++
T Consensus        34 ~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~Gd~V~~   86 (338)
T cd08254          34 KAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKVGDRVAV   86 (338)
T ss_pred             EEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCCCCEEEE
Confidence            36899999999988866533345788999999999999999999999999987

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.02  E-value=1.8e-09  Score=63.50  Aligned_cols=54  Identities=37%  Similarity=0.512  Sum_probs=46.3

Q ss_pred             eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      ++++|+.|++...+.++.....|.++|+|++|+|+++|+++.++++||+|++..
T Consensus        36 ~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~   89 (336)
T cd08276          36 AVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFKVGDRVVPTF   89 (336)
T ss_pred             EEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCCCCCEEEEec
Confidence            689999999988876543334678899999999999999999999999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.01  E-value=1.2e-09  Score=63.93  Aligned_cols=60  Identities=28%  Similarity=0.366  Sum_probs=46.9

Q ss_pred             CeeeeCHHHHHHH-hCCCCCC-CCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccC
Q psy3510           1 MAAGINPVETYIR-SGQYPNL-PDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYS   63 (64)
Q Consensus         1 ~a~~l~~~D~~~~-~~~~~~~-~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~a   63 (64)
                      .++++|+.|+... .+..+.. +..|.++|+|++|+|+++|++++.+++||+|+++..   |+|+
T Consensus        27 ~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~---g~~~   88 (312)
T cd08269          27 EGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAGLSG---GAFA   88 (312)
T ss_pred             EEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEEecC---Ccce
Confidence            3689999999887 6643211 124778999999999999999999999999998764   5544

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.01  E-value=1.2e-09  Score=65.76  Aligned_cols=52  Identities=38%  Similarity=0.643  Sum_probs=45.2

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCC---CCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH---FKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~---~~~Gd~V~~~   54 (64)
                      .++++|+.|++...+.++.  .+|.++|+|++|+|+.+|+++++   |++||+|++.
T Consensus        33 ~~~~l~~~d~~~~~~~~~~--~~p~~~g~e~~G~v~~vG~~~~~~~~~~~Gd~V~~~   87 (367)
T cd08263          33 AACGVCHSDLHVLKGELPF--PPPFVLGHEISGEVVEVGPNVENPYGLSVGDRVVGS   87 (367)
T ss_pred             EEeeeCcchHHHhcCCCCC--CCCcccccccceEEEEeCCCCCCCCcCCCCCEEEEc
Confidence            3689999999988876643  56789999999999999999988   9999999984

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.01  E-value=2.2e-09  Score=64.59  Aligned_cols=54  Identities=35%  Similarity=0.463  Sum_probs=43.4

Q ss_pred             CeeeeCHHHHHHHhCCCC--CCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYP--NLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~--~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      +++++|++|++...+...  .....|.++|+|++|+|+++|+++++|++||+|++.
T Consensus        49 ~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~  104 (364)
T PLN02702         49 KAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKHLVVGDRVALE  104 (364)
T ss_pred             EEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEc
Confidence            378999999998776321  011357789999999999999999999999999874

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.01  E-value=2.1e-09  Score=63.15  Aligned_cols=54  Identities=39%  Similarity=0.618  Sum_probs=45.4

Q ss_pred             eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      ++++|+.|++...+.++.....|.++|||++|+|+++|++++.|++||+|++..
T Consensus        36 ~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~   89 (342)
T cd08266          36 AAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVKPGQRVVIYP   89 (342)
T ss_pred             eeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCCCCCEEEEcc
Confidence            678999999988775432224578899999999999999999999999999874

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.00  E-value=1.7e-09  Score=64.51  Aligned_cols=54  Identities=31%  Similarity=0.370  Sum_probs=42.8

Q ss_pred             CeeeeCHHHHHHHhCCCC--CCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYP--NLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~--~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      +++++|+.|+.++.+...  ....+|.++|+|++|+|+++|+++++|++||+|++.
T Consensus        31 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~   86 (340)
T TIGR00692        31 LATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVSVE   86 (340)
T ss_pred             EEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEEEC
Confidence            368999999987655311  111346689999999999999999999999999984

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.00  E-value=2.7e-09  Score=62.76  Aligned_cols=55  Identities=45%  Similarity=0.749  Sum_probs=46.1

Q ss_pred             eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510           2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI   56 (64)
Q Consensus         2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~   56 (64)
                      ++++|+.|+....+.++.....|.++|+|++|+|+.+|+++.++++||+|+++..
T Consensus        35 ~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~~   89 (337)
T cd08275          35 ACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKVGDRVMGLTR   89 (337)
T ss_pred             EEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCCCCEEEEecC
Confidence            6789999999887755332245778999999999999999999999999999854

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=98.99  E-value=1.5e-09  Score=64.51  Aligned_cols=53  Identities=38%  Similarity=0.485  Sum_probs=45.7

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +++++|+.|+....+.++.  .+|.++|+|++|+|+++|++++.+++||+|+++.
T Consensus        33 ~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~   85 (344)
T cd08284          33 TAAAICGSDLHIYRGHIPS--TPGFVLGHEFVGEVVEVGPEVRTLKVGDRVVSPF   85 (344)
T ss_pred             EEeeccccchhhhcCCCCC--CCCcccccceEEEEEeeCCCccccCCCCEEEEcc
Confidence            3789999999888876542  4578899999999999999999999999999865

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=98.99  E-value=2.2e-09  Score=63.58  Aligned_cols=54  Identities=44%  Similarity=0.600  Sum_probs=45.8

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +++++|+.|++...+.++. ..+|.++|+|++|+|+++|++++.+++||+|++..
T Consensus        33 ~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~   86 (334)
T PRK13771         33 NYAGLCYRDLLQLQGFYPR-MKYPVILGHEVVGTVEEVGENVKGFKPGDRVASLL   86 (334)
T ss_pred             EEEeechhhHHHhcCCCCC-CCCCeeccccceEEEEEeCCCCccCCCCCEEEECC
Confidence            3689999999888776543 24578899999999999999998899999999875

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=98.99  E-value=2.5e-09  Score=63.22  Aligned_cols=60  Identities=58%  Similarity=0.953  Sum_probs=47.7

Q ss_pred             eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccC
Q psy3510           2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYS   63 (64)
Q Consensus         2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~a   63 (64)
                      ++++|+.|+....+.++. ...|.++|+|++|+|+.+|++++.+++||+|++... ..|+|+
T Consensus        37 ~~gi~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~-~~g~~~   96 (327)
T PRK10754         37 AIGINYIDTYIRSGLYPP-PSLPSGLGTEAAGVVSKVGSGVKHIKVGDRVVYAQS-ALGAYS   96 (327)
T ss_pred             EEEcCHHHhhhcCCCCCC-CCCCCccCcceEEEEEEeCCCCCCCCCCCEEEECCC-CCccee
Confidence            689999999888776542 235778999999999999999999999999986532 235554

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=98.98  E-value=3.1e-09  Score=62.86  Aligned_cols=61  Identities=44%  Similarity=0.718  Sum_probs=48.3

Q ss_pred             eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC-CCcccC
Q psy3510           2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL-GKGGYS   63 (64)
Q Consensus         2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~-~~G~~a   63 (64)
                      ++++|+.|++...+.++. ...+.++|+|++|+|+++|+++..|++||+|++.... ..|+|+
T Consensus        39 ~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~g~~~  100 (336)
T cd08252          39 AVSVNPVDTKVRAGGAPV-PGQPKILGWDASGVVEAVGSEVTLFKVGDEVYYAGDITRPGSNA  100 (336)
T ss_pred             EEEcCHHHHHHHcCCCCC-CCCCcccccceEEEEEEcCCCCCCCCCCCEEEEcCCCCCCccce
Confidence            689999999988775542 2456789999999999999999999999999987421 235554

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.97  E-value=2.6e-09  Score=62.42  Aligned_cols=56  Identities=23%  Similarity=0.266  Sum_probs=45.3

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYS   63 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~a   63 (64)
                      +++++|+.|++.... .    ..+.++|+|++|+|+++|++++.|++||+|+++..  .|+|+
T Consensus        34 ~~~~i~~~d~~~~~~-~----~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~--~g~~~   89 (305)
T cd08270          34 AAISLNRGELKFAAE-R----PDGAVPGWDAAGVVERAAADGSGPAVGARVVGLGA--MGAWA   89 (305)
T ss_pred             EEEecCHHHHHhhcc-C----CCCCcccceeEEEEEEeCCCCCCCCCCCEEEEecC--Cccee
Confidence            378999999987652 1    23578999999999999999999999999999863  36654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.97  E-value=3.3e-09  Score=61.95  Aligned_cols=55  Identities=53%  Similarity=0.953  Sum_probs=45.8

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +++++|+.|+....+.+......+.++|+|++|+|+.+|+++..|++||+|+++.
T Consensus        35 ~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~   89 (326)
T cd08272          35 HASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFRVGDEVYGCA   89 (326)
T ss_pred             EEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCCEEEEcc
Confidence            3689999999988775432224577899999999999999999999999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=98.97  E-value=3.5e-09  Score=63.11  Aligned_cols=52  Identities=35%  Similarity=0.552  Sum_probs=44.7

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG   53 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~   53 (64)
                      .++++|+.|+....+.++. ..+|.++|+|++|+|+++|+++..+++||+|++
T Consensus        33 ~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd~V~~   84 (345)
T cd08260          33 EACGVCRSDWHGWQGHDPD-VTLPHVPGHEFAGVVVEVGEDVSRWRVGDRVTV   84 (345)
T ss_pred             EEeeccHHHHHHhcCCCCC-CCCCeeeccceeEEEEEECCCCccCCCCCEEEE
Confidence            3689999999988886543 245789999999999999999999999999987

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=98.95  E-value=3.1e-09  Score=62.47  Aligned_cols=53  Identities=19%  Similarity=0.261  Sum_probs=43.5

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +++++|++|+....+.++....+|.++|+|++|+|+++  +++.|++||+|++..
T Consensus        35 ~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~~Gd~V~~~~   87 (325)
T cd05280          35 HYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFREGDEVLVTG   87 (325)
T ss_pred             EEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCCCCCEEEEcc
Confidence            37899999999988865433345788999999999998  456799999999863

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=98.94  E-value=5.2e-09  Score=61.03  Aligned_cols=55  Identities=45%  Similarity=0.725  Sum_probs=45.5

Q ss_pred             eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510           2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI   56 (64)
Q Consensus         2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~   56 (64)
                      ++++|+.|+....+.++....+|.++|+|++|+|+.+|+++.++++||+|+++..
T Consensus        36 ~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~~~   90 (325)
T TIGR02824        36 AAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWKVGDRVCALVA   90 (325)
T ss_pred             EEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCCCCCEEEEccC
Confidence            6789999998877655432245688999999999999999999999999999753

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=98.94  E-value=3.8e-09  Score=62.76  Aligned_cols=54  Identities=35%  Similarity=0.498  Sum_probs=42.3

Q ss_pred             CeeeeCHHHHHHHh-CCCCC-CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRS-GQYPN-LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~-~~~~~-~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      .++++|+.|+.... +.+.. ...+|.++|+|++|+|+++|+++++|++||+|++.
T Consensus        29 ~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~   84 (339)
T cd08232          29 AAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQRVAVN   84 (339)
T ss_pred             EEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCEEEEc
Confidence            36899999988763 32211 11356789999999999999999999999999874

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=98.94  E-value=6.2e-09  Score=61.48  Aligned_cols=52  Identities=40%  Similarity=0.598  Sum_probs=43.1

Q ss_pred             eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      ++++|++|+....+. .. ..+|.++|+|++|+|+++|++++.+++||+|++..
T Consensus        35 ~~~i~~~d~~~~~~~-~~-~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~   86 (325)
T cd08264          35 MAGVNPVDYNVINAV-KV-KPMPHIPGAEFAGVVEEVGDHVKGVKKGDRVVVYN   86 (325)
T ss_pred             EEEechHHHHHHhCC-CC-CCCCeecccceeEEEEEECCCCCCCCCCCEEEECC
Confidence            689999999887642 11 13467899999999999999999999999999873

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=98.93  E-value=3.9e-09  Score=62.62  Aligned_cols=51  Identities=37%  Similarity=0.562  Sum_probs=43.9

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG   53 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~   53 (64)
                      +++++|+.|++...+.++.  ..|.++|+|++|+|+++|++++.|++||+|++
T Consensus        33 ~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~   83 (338)
T PRK09422         33 EYCGVCHTDLHVANGDFGD--KTGRILGHEGIGIVKEVGPGVTSLKVGDRVSI   83 (338)
T ss_pred             EEEeechhHHHHHcCCCCC--CCCccCCcccceEEEEECCCCccCCCCCEEEE
Confidence            3789999999988776542  34678999999999999999999999999987

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=98.93  E-value=5e-09  Score=62.28  Aligned_cols=53  Identities=42%  Similarity=0.611  Sum_probs=44.5

Q ss_pred             eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      ++++|+.|.....+.++.....+.++|+|++|+|+++|++++.+++||+|++.
T Consensus        35 ~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~   87 (341)
T cd08297          35 ASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKVGDRVGVK   87 (341)
T ss_pred             EeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCCCCEEEEe
Confidence            68899999988877654322346689999999999999999999999999975

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=98.93  E-value=4.7e-09  Score=62.06  Aligned_cols=54  Identities=41%  Similarity=0.651  Sum_probs=45.5

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      .++++|+.|++...+.+.. ...|.++|+|++|+|+++|++++.|++||+|+++.
T Consensus        34 ~~~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~   87 (306)
T cd08258          34 AAAGICGSDLHIYKGDYDP-VETPVVLGHEFSGTIVEVGPDVEGWKVGDRVVSET   87 (306)
T ss_pred             EEEEechhhHHHHcCCCCc-CCCCeeeccceEEEEEEECCCcCcCCCCCEEEEcc
Confidence            3689999999888775421 23568899999999999999999999999999875

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.93  E-value=3.8e-09  Score=61.65  Aligned_cols=54  Identities=48%  Similarity=0.783  Sum_probs=45.0

Q ss_pred             eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      ++++|+.|+.+..+.+.....++.++|+|++|+|+.+|++++.|++||+|+++.
T Consensus        36 ~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~   89 (328)
T cd08268          36 AIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFAVGDRVSVIP   89 (328)
T ss_pred             EEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCCCCCEEEecc
Confidence            678999999887765443234577899999999999999999999999999874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=98.91  E-value=7.2e-09  Score=60.14  Aligned_cols=52  Identities=54%  Similarity=0.860  Sum_probs=45.0

Q ss_pred             eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      ++++|+.|++...+.++.  .+|.++|+|++|+|+.+|+++.++++||+|+++.
T Consensus        35 ~~~i~~~d~~~~~~~~~~--~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~   86 (320)
T cd05286          35 AIGVNFIDTYFRSGLYPL--PLPFVLGVEGAGVVEAVGPGVTGFKVGDRVAYAG   86 (320)
T ss_pred             EeecCHHHHHHhcCCCCC--CCCccCCcceeEEEEEECCCCCCCCCCCEEEEec
Confidence            678999999988775542  3567899999999999999999999999999875

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=98.90  E-value=6.8e-09  Score=61.39  Aligned_cols=53  Identities=43%  Similarity=0.668  Sum_probs=45.2

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      +++++|+.|++...+.++. ...|.++|+|++|+|+++|+++.++++||+|++.
T Consensus        37 ~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~   89 (329)
T cd08298          37 EACGVCRTDLHIVEGDLPP-PKLPLIPGHEIVGRVEAVGPGVTRFSVGDRVGVP   89 (329)
T ss_pred             EEEeccHHHHHHHhCCCCC-CCCCccccccccEEEEEECCCCCCCcCCCEEEEe
Confidence            3689999999998886543 2457899999999999999999999999999873

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=98.88  E-value=6.2e-09  Score=62.73  Aligned_cols=53  Identities=21%  Similarity=0.141  Sum_probs=41.7

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCc--cceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGT--EVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~--e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      +|+++||.|...+.+... ...+|.++|+  |++|+|..+|+++++|++||+|+++
T Consensus        51 ~a~~inp~~~~~~~~~~~-~~~~p~~~G~~~~~~G~v~~vg~~v~~~~~Gd~V~~~  105 (348)
T PLN03154         51 LYLSCDPYMRGRMRDFHD-SYLPPFVPGQRIEGFGVSKVVDSDDPNFKPGDLISGI  105 (348)
T ss_pred             EEEccCHHHHHhhhccCC-CCCCCcCCCCeeEeeEEEEEEecCCCCCCCCCEEEec
Confidence            478999999875543222 1135788997  7899999999999999999999875

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=98.88  E-value=1.1e-08  Score=60.54  Aligned_cols=52  Identities=35%  Similarity=0.495  Sum_probs=44.1

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG   53 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~   53 (64)
                      .++++|+.|++...+.++. ..+|.++|+|++|+|+++|++++.+++||+|+.
T Consensus        32 ~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~   83 (330)
T cd08245          32 EACGVCHTDLHAAEGDWGG-SKYPLVPGHEIVGEVVEVGAGVEGRKVGDRVGV   83 (330)
T ss_pred             EEEeccHHHHHHHcCCCCC-CCCCcccCccceEEEEEECCCCcccccCCEEEE
Confidence            3689999999998876532 245778999999999999999999999999984

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=98.86  E-value=1e-08  Score=60.42  Aligned_cols=53  Identities=21%  Similarity=0.293  Sum_probs=42.9

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +++++|+.|+....+.++.....|.++|+|++|+|++  .++..|++||+|+++.
T Consensus        34 ~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~Gd~V~~~~   86 (323)
T TIGR02823        34 AYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFREGDEVIVTG   86 (323)
T ss_pred             EEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCCCCEEEEcc
Confidence            3789999999988886532224578899999999988  5667899999999875

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=98.86  E-value=4.8e-09  Score=61.43  Aligned_cols=31  Identities=26%  Similarity=0.473  Sum_probs=28.0

Q ss_pred             ccCccceEEEEEeCCCCC------CCCCCCEEEEecC
Q psy3510          26 ILGTEVSGIVEEVGQGVK------HFKVGDKVFGKPI   56 (64)
Q Consensus        26 ~~G~e~~G~V~~vg~~v~------~~~~Gd~V~~~~~   56 (64)
                      ++|||++|+|+++|++|+      ++++||+|.....
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~   37 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVT   37 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCC
Confidence            589999999999999999      8999999987543

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=98.84  E-value=6.4e-09  Score=62.10  Aligned_cols=54  Identities=44%  Similarity=0.677  Sum_probs=44.1

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI   56 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~   56 (64)
                      +++++|++|+....+.+.  ...+.++|+|++|+|+++|++++.+++||+|+++..
T Consensus        34 ~~~~i~~~d~~~~~~~~~--~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~   87 (339)
T cd08249          34 KAVALNPVDWKHQDYGFI--PSYPAILGCDFAGTVVEVGSGVTRFKVGDRVAGFVH   87 (339)
T ss_pred             EEEEcCchheeeeecccc--cCCCceeeeeeeEEEEEeCCCcCcCCCCCEEEEEec
Confidence            368999999887655331  134678999999999999999999999999999863

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=98.84  E-value=1.9e-08  Score=58.52  Aligned_cols=54  Identities=46%  Similarity=0.776  Sum_probs=44.9

Q ss_pred             eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      ++++|+.|+....+.+......+.++|+|++|+|+.+|+++..+++||+|+++.
T Consensus        36 ~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~   89 (323)
T cd08241          36 AAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGFKVGDRVVALT   89 (323)
T ss_pred             EEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCCCCCCEEEEec
Confidence            678999999988775532223466899999999999999999999999999986

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd05281 TDH Threonine dehydrogenase

Probab=98.82  E-value=1.6e-08  Score=60.31  Aligned_cols=53  Identities=38%  Similarity=0.445  Sum_probs=42.0

Q ss_pred             eeeeCHHHHHHHhCCC-C-CCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           2 AAGINPVETYIRSGQY-P-NLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         2 a~~l~~~D~~~~~~~~-~-~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      ++++|+.|+.++.+.. . .....|.++|+|++|+|+.+|++++.+++||+|+++
T Consensus        34 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~   88 (341)
T cd05281          34 AASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVKVGDYVSAE   88 (341)
T ss_pred             EEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCCCCCEEEEC
Confidence            6899999988765421 0 111346689999999999999999999999999986

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=98.82  E-value=1.9e-08  Score=60.04  Aligned_cols=54  Identities=28%  Similarity=0.354  Sum_probs=40.7

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccce--EEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVS--GIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~--G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      +|+++|+.|++.+.+.++....+|.++|+++.  |++..+++.+++|++||+|+++
T Consensus        45 ~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~~v~~~~vGd~V~~~  100 (338)
T cd08295          45 LYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDSGNPDFKVGDLVWGF  100 (338)
T ss_pred             EEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEecCCCCCCCCCEEEec
Confidence            48999999999988843321245778887654  4555678888899999999875

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=98.80  E-value=2.7e-08  Score=58.59  Aligned_cols=53  Identities=23%  Similarity=0.318  Sum_probs=42.4

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +++++|+.|+....+.++....+|.++|+|++|+|++  ++++.+++||+|+++.
T Consensus        35 ~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~Gd~V~~~~   87 (324)
T cd08288          35 HYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFKPGDRVVLTG   87 (324)
T ss_pred             EEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCCCCCEEEECC
Confidence            3689999999988775432224577899999999998  6777899999999864

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=98.79  E-value=4e-08  Score=57.46  Aligned_cols=52  Identities=35%  Similarity=0.537  Sum_probs=42.6

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +++++|+.|+....+.++. ...|.++|+|++|+|+++|.  ..+++||+|+++.
T Consensus        35 ~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~vG~--~~~~~Gd~V~~~~   86 (320)
T cd08243          35 KAFGLNRSEIFTRQGHSPS-VKFPRVLGIEAVGEVEEAPG--GTFTPGQRVATAM   86 (320)
T ss_pred             EEEecCHHHHHHhcCCCCC-CCCCccccceeEEEEEEecC--CCCCCCCEEEEec
Confidence            3689999999988875532 24567899999999999995  5799999999875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=98.79  E-value=3.3e-08  Score=57.31  Aligned_cols=54  Identities=52%  Similarity=0.827  Sum_probs=44.8

Q ss_pred             eeeeCHHHHHHHhCCCCC--CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           2 AAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         2 a~~l~~~D~~~~~~~~~~--~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      ++++|+.|+....+.+..  ....|.++|+|++|+|+.+|+++..+++||+|+++.
T Consensus        36 ~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~G~~V~~~~   91 (309)
T cd05289          36 AAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTGFKVGDEVFGMT   91 (309)
T ss_pred             EeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCCCCCCCEEEEcc
Confidence            688999999888775421  113478899999999999999999999999999986

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=98.78  E-value=2.6e-08  Score=59.46  Aligned_cols=53  Identities=36%  Similarity=0.487  Sum_probs=41.4

Q ss_pred             CeeeeCHHHHHHHhCC-CCC-CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510           1 MAAGINPVETYIRSGQ-YPN-LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG   53 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~-~~~-~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~   53 (64)
                      +++++|+.|++..... ... ....|.++|+|++|+|+++|+++++|++||+|++
T Consensus        30 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~   84 (343)
T cd05285          30 RAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVGDRVAI   84 (343)
T ss_pred             EEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCCCEEEE
Confidence            3689999998876321 111 1134678999999999999999999999999986

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=98.78  E-value=3.2e-08  Score=60.18  Aligned_cols=55  Identities=40%  Similarity=0.525  Sum_probs=42.9

Q ss_pred             CeeeeCHHHHHHHhCCCCCC---------CCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNL---------PDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~---------~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +++++|.+|++...+.....         ...+.++|||++|+|+++|++++.+++||+|++..
T Consensus        50 ~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~  113 (393)
T cd08246          50 MAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSDASGIVWAVGEGVKNWKVGDEVVVHC  113 (393)
T ss_pred             EEEeeccchhhhhcCCCccccccccccCCCCCccccccceEEEEEEeCCCCCcCCCCCEEEEec
Confidence            36899999998876641100         01235889999999999999999999999999875

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.76  E-value=4.1e-08  Score=57.38  Aligned_cols=54  Identities=44%  Similarity=0.695  Sum_probs=44.6

Q ss_pred             eeeeCHHHHHHHhCCCCC--CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           2 AAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         2 a~~l~~~D~~~~~~~~~~--~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      ++++|+.|+....+.++.  ....+..+|+|++|.|.++|+++..+++||+|++..
T Consensus        35 ~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~   90 (319)
T cd08267          35 AASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRL   90 (319)
T ss_pred             EeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEec
Confidence            689999999988775421  113467899999999999999999999999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.76  E-value=3.1e-08  Score=58.43  Aligned_cols=47  Identities=40%  Similarity=0.639  Sum_probs=39.6

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      +++++|++|++...+.++    .|.++|+|++|+|+++|++   +++||+|...
T Consensus        32 ~a~~i~~~d~~~~~g~~~----~~~~~G~e~~G~Vv~~G~~---~~~G~~V~~~   78 (319)
T cd08242          32 LLAGICNTDLEIYKGYYP----FPGVPGHEFVGIVEEGPEA---ELVGKRVVGE   78 (319)
T ss_pred             EEEEEccccHHHHcCCCC----CCCccCceEEEEEEEeCCC---CCCCCeEEEC
Confidence            378999999998887543    4778999999999999987   6799999753

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=98.76  E-value=3.5e-08  Score=58.17  Aligned_cols=62  Identities=26%  Similarity=0.316  Sum_probs=43.3

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC----CCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL----GKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~----~~G~~ae   64 (64)
                      +++++|++|.....+.......+|.++|+|++|+|++.+  +..+++||+|++....    ..|+|+|
T Consensus        35 ~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~~Gd~V~~~~~~~~~~~~g~~~~  100 (326)
T cd08289          35 AYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFKPGDEVIVTSYDLGVSHHGGYSE  100 (326)
T ss_pred             EEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCCCCCEEEEcccccCCCCCCccee
Confidence            368999999876543211112357889999999999854  5679999999987510    2466654

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.76  E-value=5e-08  Score=57.15  Aligned_cols=53  Identities=36%  Similarity=0.540  Sum_probs=44.1

Q ss_pred             eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      ++++|+.|+....+.+... ..+.++|+|++|+|+.+|++++.+++||+|+++.
T Consensus        36 ~~~i~~~d~~~~~~~~~~~-~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~   88 (325)
T cd08271          36 AAGLNPVDWKVIAWGPPAW-SYPHVPGVDGAGVVVAVGAKVTGWKVGDRVAYHA   88 (325)
T ss_pred             EEecCHHHHHHhcCCCCCC-CCCcccccceEEEEEEeCCCCCcCCCCCEEEecc
Confidence            6889999998877654321 2367899999999999999999999999999885

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=98.60  E-value=2.2e-07  Score=56.76  Aligned_cols=55  Identities=42%  Similarity=0.665  Sum_probs=41.9

Q ss_pred             CeeeeCHHHHHHHhCCCCCC--------C-CCC-cccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNL--------P-DLP-AILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~--------~-~~~-~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      .++++|..|++...+.+...        . ..+ .++|+|++|+|+++|++++.+++||+|++..
T Consensus        45 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~  109 (398)
T TIGR01751        45 MAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGSDASGVVWRVGPGVTRWKVGDEVVASC  109 (398)
T ss_pred             EEEecCchhhhhhcCCccchhhhhcccCCCCCCceecccceEEEEEEeCCCCCCCCCCCEEEEcc
Confidence            36899999987765532100        0 123 3799999999999999999999999999875

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=98.39  E-value=8.2e-07  Score=51.48  Aligned_cols=34  Identities=47%  Similarity=0.606  Sum_probs=31.4

Q ss_pred             CCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510          22 DLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus        22 ~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      .+|.++|+|++|+|+++|+++++|++||+|+++.
T Consensus        19 ~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~   52 (277)
T cd08255          19 PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCFG   52 (277)
T ss_pred             cCCcccCcceeEEEEEeCCCCCCCCCCCEEEecC
Confidence            4789999999999999999999999999999874

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=98.35  E-value=1.5e-06  Score=51.64  Aligned_cols=47  Identities=15%  Similarity=0.244  Sum_probs=35.5

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      +|+++|+.|.   .+.++. ...|.++|.|++|+|+++++   .|++||+|+++
T Consensus        39 ~a~~~n~~~~---~g~~~~-~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~   85 (325)
T TIGR02825        39 LFLSVDPYMR---VAAKRL-KEGDTMMGQQVARVVESKNV---ALPKGTIVLAS   85 (325)
T ss_pred             EEEecCHHHh---cccCcC-CCCCcEecceEEEEEEeCCC---CCCCCCEEEEe
Confidence            4789999654   343322 23467999999999999773   69999999986

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=98.20  E-value=3.1e-06  Score=50.00  Aligned_cols=47  Identities=21%  Similarity=0.363  Sum_probs=34.8

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      +++++|+.|.+....    ....|.++|+|++|+|++   .++.|++||+|++.
T Consensus        41 ~a~~in~~~~~~~~~----~~~~p~v~G~e~~G~V~~---~~~~~~~Gd~V~~~   87 (329)
T cd08294          41 LFLSVDPYMRPYSKR----LNEGDTMIGTQVAKVIES---KNSKFPVGTIVVAS   87 (329)
T ss_pred             EEEecCHHHhccccc----CCCCCcEecceEEEEEec---CCCCCCCCCEEEee
Confidence            478999987642111    113578999999999985   45679999999975

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=98.06  E-value=1.7e-05  Score=46.84  Aligned_cols=53  Identities=25%  Similarity=0.150  Sum_probs=37.7

Q ss_pred             CeeeeCHHHHHHHhCCCCC--CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~--~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      .++++|+.|.....+....  ....+.++|+|++|+|+++|++  .+++||+|+++.
T Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~--~~~~Gd~V~~~~   94 (329)
T cd05288          40 LYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRSP--DFKVGDLVSGFL   94 (329)
T ss_pred             EEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCCC--CCCCCCEEeccc
Confidence            3688999876554442111  0123567899999999999964  799999999763

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>KOG1198|consensus

Probab=97.89  E-value=3e-05  Score=47.45  Aligned_cols=61  Identities=38%  Similarity=0.701  Sum_probs=40.7

Q ss_pred             eeeeCHHHHHHHhCCCCCCC---CCCcccCccceEE---EEEeC-CCCCCCCCCCEEEEecCCCCcccCC
Q psy3510           2 AAGINPVETYIRSGQYPNLP---DLPAILGTEVSGI---VEEVG-QGVKHFKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         2 a~~l~~~D~~~~~~~~~~~~---~~~~~~G~e~~G~---V~~vg-~~v~~~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      ++++||.|++++.+.+....   .+|.+++.+..|+   +...| ..+..+..||.+.....  .|+|||
T Consensus        41 a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~~~~--~g~~ae  108 (347)
T KOG1198|consen   41 AVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVAFLS--SGGLAE  108 (347)
T ss_pred             EeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEeeccC--CCceee
Confidence            67889999999999876554   5665555555444   44455 33445667776666555  788876

>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts

Probab=94.16  E-value=0.1  Score=26.47  Aligned_cols=25  Identities=44%  Similarity=0.494  Sum_probs=20.2

Q ss_pred             ceEEEEEeCCCC---------CCCCCCCEEEEec
Q psy3510          31 VSGIVEEVGQGV---------KHFKVGDKVFGKP   55 (64)
Q Consensus        31 ~~G~V~~vg~~v---------~~~~~Gd~V~~~~   55 (64)
                      ..|+|+++|++.         ..+++||+|+...
T Consensus        35 ~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~   68 (93)
T cd00320          35 QEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPK   68 (93)
T ss_pred             eEEEEEEECCCeECCCCCCccccccCCCEEEECC
Confidence            689999999973         3499999998654

It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.

>PTZ00414 10 kDa heat shock protein; Provisional

Probab=93.49  E-value=0.17  Score=26.21  Aligned_cols=25  Identities=36%  Similarity=0.409  Sum_probs=19.8

Q ss_pred             ceEEEEEeCCCCC----CCCCCCEEEEec
Q psy3510          31 VSGIVEEVGQGVK----HFKVGDKVFGKP   55 (64)
Q Consensus        31 ~~G~V~~vg~~v~----~~~~Gd~V~~~~   55 (64)
                      ..|+|+++|++..    ..++||+|+.--
T Consensus        45 ~~g~VvAVG~G~~~~~~~Vk~GD~Vl~~~   73 (100)
T PTZ00414         45 NEGTVVAVAAATKDWTPTVKVGDTVLLPE   73 (100)
T ss_pred             ceeEEEEECCCCccccceecCCCEEEEcC
Confidence            3699999999753    389999998643

>PRK00364 groES co-chaperonin GroES; Reviewed

Probab=93.14  E-value=0.15  Score=25.97  Aligned_cols=25  Identities=44%  Similarity=0.551  Sum_probs=19.9

Q ss_pred             ceEEEEEeCCCCC---------CCCCCCEEEEec
Q psy3510          31 VSGIVEEVGQGVK---------HFKVGDKVFGKP   55 (64)
Q Consensus        31 ~~G~V~~vg~~v~---------~~~~Gd~V~~~~   55 (64)
                      ..|+|+++|++..         .+++||+|+...
T Consensus        36 ~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~   69 (95)
T PRK00364         36 QEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGK   69 (95)
T ss_pred             ceEEEEEECCCeECCCCCEeecccCCCCEEEEcC
Confidence            5799999999542         389999998654

>KOG1202|consensus

Probab=93.10  E-value=0.096  Score=37.87  Aligned_cols=45  Identities=27%  Similarity=0.310  Sum_probs=34.6

Q ss_pred             eeeeCHHHHHHHhCCCCCCC------CCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510           2 AAGINPVETYIRSGQYPNLP------DLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI   56 (64)
Q Consensus         2 a~~l~~~D~~~~~~~~~~~~------~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~   56 (64)
                      |+.+|.+|+++..|.++...      ....++|.||+|+-          .-|.||+++.+
T Consensus      1453 YAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGRd----------~~GrRvM~mvp 1503 (2376)
T KOG1202|consen 1453 YAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGRD----------ASGRRVMGMVP 1503 (2376)
T ss_pred             eccccHHHHHHhcCCCCcccCCCccchhhheeceeecccc----------CCCcEEEEeee
Confidence            68899999999999875321      12468999999963          44889999886

>PRK14533 groES co-chaperonin GroES; Provisional

Probab=91.75  E-value=0.4  Score=24.33  Aligned_cols=25  Identities=36%  Similarity=0.360  Sum_probs=19.6

Q ss_pred             ceEEEEEeCCCCC----CCCCCCEEEEec
Q psy3510          31 VSGIVEEVGQGVK----HFKVGDKVFGKP   55 (64)
Q Consensus        31 ~~G~V~~vg~~v~----~~~~Gd~V~~~~   55 (64)
                      ..|+|+++|+...    ..++||+|+...
T Consensus        36 ~~G~VvavG~g~~~~~~~Vk~GD~Vl~~~   64 (91)
T PRK14533         36 MKAEVVAVGKLDDEEDFDIKVGDKVIFSK   64 (91)
T ss_pred             ceEEEEEECCCCccccccccCCCEEEEcc
Confidence            5799999997532    389999998654

>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []

Probab=90.78  E-value=0.24  Score=25.05  Aligned_cols=26  Identities=42%  Similarity=0.448  Sum_probs=18.3

Q ss_pred             ceEEEEEeCC--------CC-CCCCCCCEEEEecC
Q psy3510          31 VSGIVEEVGQ--------GV-KHFKVGDKVFGKPI   56 (64)
Q Consensus        31 ~~G~V~~vg~--------~v-~~~~~Gd~V~~~~~   56 (64)
                      ..|+|+++|+        .+ ..+++||+|+.-..
T Consensus        35 ~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~~   69 (93)
T PF00166_consen   35 NQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPKY   69 (93)
T ss_dssp             EEEEEEEE-SEEETTTSSEEETSS-TTSEEEEETT
T ss_pred             ceeEEEEcCCccccCCCcEeeeeeeeccEEecccc
Confidence            5899999999        22 35889999987654

These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....

>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]

Probab=90.23  E-value=0.54  Score=24.20  Aligned_cols=25  Identities=40%  Similarity=0.555  Sum_probs=18.5

Q ss_pred             eEEEEEeCCCCC---------CCCCCCEEEEecC
Q psy3510          32 SGIVEEVGQGVK---------HFKVGDKVFGKPI   56 (64)
Q Consensus        32 ~G~V~~vg~~v~---------~~~~Gd~V~~~~~   56 (64)
                      -|+|+++|+.-.         .+++||+|+.--.
T Consensus        37 ~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf~ky   70 (96)
T COG0234          37 EGEVVAVGPGRRDENGELVPLDVKVGDRVLFGKY   70 (96)
T ss_pred             ceEEEEEccceecCCCCEeccccccCCEEEECcc
Confidence            589999997321         2899999986543

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=89.39  E-value=0.57  Score=29.05  Aligned_cols=34  Identities=26%  Similarity=0.236  Sum_probs=23.1

Q ss_pred             CCcccCccceEEEEEeC--CCCCCCCCCCEEEEecC
Q psy3510          23 LPAILGTEVSGIVEEVG--QGVKHFKVGDKVFGKPI   56 (64)
Q Consensus        23 ~~~~~G~e~~G~V~~vg--~~v~~~~~Gd~V~~~~~   56 (64)
                      .|.-+|-...|-++...  ++...|++||.|.....
T Consensus        67 ~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~~G  102 (340)
T COG2130          67 PPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGVSG  102 (340)
T ss_pred             CCcCCCceeECCeeEEEEecCCCCCCCCCEEEeccc
Confidence            46667766666444322  45678999999998764

>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production

Probab=83.67  E-value=0.95  Score=23.90  Aligned_cols=32  Identities=25%  Similarity=0.281  Sum_probs=28.0

Q ss_pred             cccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510          25 AILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI   56 (64)
Q Consensus        25 ~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~   56 (64)
                      .++|-..+|+|.--|......++||+|+.+.-
T Consensus        58 vI~g~~gSg~I~lNGAAAr~~~~GD~vII~sy   89 (111)
T cd06919          58 VIPGERGSGVICLNGAAARLGQPGDRVIIMAY   89 (111)
T ss_pred             EEEcCCCCCEEEeCCHHHhcCCCCCEEEEEEC
Confidence            57888899999999988888999999998764

Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment

>TIGR00223 panD L-aspartate-alpha-decarboxylase

Probab=81.75  E-value=1.2  Score=23.97  Aligned_cols=32  Identities=31%  Similarity=0.320  Sum_probs=28.0

Q ss_pred             cccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510          25 AILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI   56 (64)
Q Consensus        25 ~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~   56 (64)
                      .++|-..+|+|.--|......++||+|+.+.-
T Consensus        59 vI~G~~GSg~I~lNGAAArl~~~GD~VII~sy   90 (126)
T TIGR00223        59 AIAGKRGSRIICVNGAAARCVSVGDIVIIASY   90 (126)
T ss_pred             EEEcCCCCCEEEeCCHHHhcCCCCCEEEEEEC
Confidence            57888999999999988888999999998764

Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.

>PRK05449 aspartate alpha-decarboxylase; Provisional

Probab=80.61  E-value=1.4  Score=23.78  Aligned_cols=32  Identities=28%  Similarity=0.362  Sum_probs=27.9

Q ss_pred             cccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510          25 AILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI   56 (64)
Q Consensus        25 ~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~   56 (64)
                      .++|-..+|+|.--|......++||+|+.+.-
T Consensus        59 vI~g~~GSg~I~lNGAAAr~~~~GD~vII~ay   90 (126)
T PRK05449         59 VIAGERGSGVICLNGAAARLVQVGDLVIIAAY   90 (126)
T ss_pred             EEEcCCCCCEEEeCCHHHhcCCCCCEEEEEEC
Confidence            57888899999998988888999999998764

>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase

Probab=80.31  E-value=0.79  Score=24.37  Aligned_cols=32  Identities=28%  Similarity=0.391  Sum_probs=24.4

Q ss_pred             cccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510          25 AILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI   56 (64)
Q Consensus        25 ~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~   56 (64)
                      .++|-..+|+|.--|......++||+|+.+.-
T Consensus        59 vI~g~~GSg~I~lNGaAArl~~~GD~vII~sy   90 (116)
T PF02261_consen   59 VIPGERGSGVICLNGAAARLVQVGDRVIIMSY   90 (116)
T ss_dssp             EEEESTTTT-EEEEGGGGGCS-TT-EEEEEEE
T ss_pred             EEEccCCCcEEEECCHHHhccCCCCEEEEEEc
Confidence            47788889999999988888999999988753

The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	64
1yb5_A	351	Crystal Structure Of Human Zeta-crystallin With Bou		2e-11
1qor_A	327	Crystal Structure Of Escherichia Coli Quinone Oxido		4e-11
3jyl_A	325	Crystal Structures Of Pseudomonas Syringae Pv. Toma		7e-08
3gaz_A	343	Crystal Structure Of An Alcohol Dehydrogenase Super		6e-07
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		2e-06
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		2e-06
4a27_A	349	Crystal Structure Of Human Synaptic Vesicle Membran		5e-06
3qwa_A	334	Crystal Structure Of Saccharomyces Cerevisiae Zeta-		1e-05
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		5e-05
1ht0_A	374	Human Gamma-2 Alcohol Dehydrogense Length = 374		1e-04
1htb_A	374	Crystallization Of Human Beta3 Alcohol Dehydrogenas		2e-04
1hdx_A	374	Three-Dimensional Structures Of Three Human Alcohol		2e-04
1hdy_A	374	Three-Dimensional Structures Of Three Human Alcohol		2e-04
2vn8_A	375	Crystal Structure Of Human Reticulon 4 Interacting		3e-04
1e3l_A	376	P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase		3e-04
1hdz_A	374	Three-Dimensional Structures Of Three Human Alcohol		3e-04
1e3e_A	376	Mouse Class Ii Alcohol Dehydrogenase Complex With N		4e-04
3i4c_A	347	Crystal Structure Of Sulfolobus Solfataricus Adh(Ss		4e-04
1hso_A	374	Human Alpha Alcohol Dehydrogenase (Adh1a) Length =		4e-04
4dup_A	353	Crystal Structure Of A Quinone Oxidoreductase From		4e-04
1f8f_A	371	Crystal Structure Of Benzyl Alcohol Dehydrogenase F		5e-04
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		5e-04
2oby_A	338	Crystal Structure Of Human P53 Inducible Oxidoreduc		6e-04
2j8z_A	354	Crystal Structure Of Human P53 Inducible Oxidoreduc		7e-04

>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp Length = 351

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
           A G+NPVETYIRSG Y   P LP   G++V+G++E VG     FK GD+VF    +  GG
Sbjct: 66  ACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTI-SGG 124
Query: 62  YSQ 64
           Y++
Sbjct: 125 YAE 127

>pdb|1QOR|A Chain A, Crystal Structure Of Escherichia Coli Quinone Oxidoreductase Complexed With Nadph Length = 327

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDK-VFGKPILG 58
          A GIN ++TYIRSG YP  P LP+ LGTE +GIV +VG GVKH K GD+ V+ +  LG
Sbjct: 37 AIGINFIDTYIRSGLYPP-PSLPSGLGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALG 93

>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato Dc3000 Quinone Oxidoreductase Length = 325

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          A G+N ++TY RSG YP  P LP+ LG E +G+VE VG  V  FKVGD+V
Sbjct: 37 AIGLNFIDTYYRSGLYPA-PFLPSGLGAEGAGVVEAVGDEVTRFKVGDRV 85

>pdb|3GAZ|A Chain A, Crystal Structure Of An Alcohol Dehydrogenase Superfamily Protein From Novosphingobium Aromaticivorans Length = 343

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 2  AAGINPVETYIRSGQYPNLPD-LPAILGTEVSGIVEEVGQGVKHFKVGDKVFG 53
          A+G NP++  IR+G+ P+    LPAILG +++G V  VG  V  F+VGD VFG
Sbjct: 41 ASGTNPLDAKIRAGEAPHAQQPLPAILGXDLAGTVVAVGPEVDSFRVGDAVFG 93

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 30/50 (60%)
Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          A G+   + +   G +P  P LP I G E  GIVEEVG GV H KVGD+V
Sbjct: 34 ACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRV 83

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 30/50 (60%)
Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          A G+   + +   G +P  P LP I G E  GIVEEVG GV H KVGD+V
Sbjct: 34 ACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRV 83

>pdb|4A27|A Chain A, Crystal Structure Of Human Synaptic Vesicle Membrane Protein Vat-1 Homolog-Like Protein Length = 349

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG 53
          A G+N ++  +R G   N P  P + G E SGIVE +G  VK +++GD+V  
Sbjct: 39 ACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKGYEIGDRVMA 90

>pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Zeta-Crystallin-Like Quinone Oxidoreductase Zta1 Length = 334

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 3  AGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
           G+N +E+Y R G YP   + P +LG E SG V   G+GV +F+VGD+V
Sbjct: 45 TGVNYIESYFRKGIYP--CEKPYVLGREASGTVVAKGKGVTNFEVGDQV 91

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 2  AAGINPVETYIRSG-QYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG 60
          AA +N ++ ++R G   P LP LP +LG + SG+V+ VG GV+ F  GD+V   P L  G
Sbjct: 36 AAALNHLDVWVRKGVASPKLP-LPHVLGADGSGVVDAVGPGVEGFAPGDEVVINPGLSCG 94

>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 1  MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVF 52
          +AAGI   + ++ SG    +  LP ILG E +GIVE VG+GV   K GDKV 
Sbjct: 41 VAAGICRSDEHVVSGNL--VTPLPVILGHEAAGIVESVGEGVTTVKPGDKVI 90

>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 1  MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVF 52
          +A GI   + ++ SG    +  LP ILG E +GIVE VG+GV   K GDKV 
Sbjct: 41 VAVGICRTDDHVVSGNL--VTPLPVILGHEAAGIVESVGEGVTTVKPGDKVI 90

>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 1  MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVF 52
          +A GI   + ++ SG    +  LP ILG E +GIVE VG+GV   K GDKV 
Sbjct: 41 VAVGICRTDDHVVSGNL--VTPLPVILGHEAAGIVESVGEGVTTVKPGDKVI 90

>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 1  MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVF 52
          +A GI   + ++ SG    +  LP ILG E +GIVE VG+GV   K GDKV 
Sbjct: 41 VAVGICHTDDHVVSGNL--VTPLPVILGHEAAGIVESVGEGVTTVKPGDKVI 90

>pdb|2VN8|A Chain A, Crystal Structure Of Human Reticulon 4 Interacting Protein 1 In Complex With Nadph Length = 375

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 14/66 (21%)
Query: 2   AAGINPVETYIRSG---QYPNLP-----------DLPAILGTEVSGIVEEVGQGVKHFKV 47
           AA +NP++  +RSG      N+            + P  LG +VSG+V E G  VK+FK 
Sbjct: 59  AASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKP 118
Query: 48  GDKVFG 53
           GD+V+ 
Sbjct: 119 GDEVWA 124

>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 23 LPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
           P +LG E +GIVE VG GV +FK GDKV
Sbjct: 61 FPVVLGHECAGIVESVGPGVTNFKPGDKV 89

>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 1  MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVF 52
          +A GI   + ++ SG    +  LP ILG E +GIVE VG+GV   K GDKV 
Sbjct: 41 VAVGICGTDDHVVSGNL--VTPLPVILGHEAAGIVESVGEGVTTVKPGDKVI 90

>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 23 LPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
           P +LG E +GIVE VG GV +FK GDKV
Sbjct: 61 FPVVLGHECAGIVESVGPGVTNFKPGDKV 89

>pdb|3I4C|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh) Double Mutant (W95l,N249y) Length = 347

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 2   AAGINPVETYIRSGQYPNLP-------DLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK 54
           AAG+   + ++R G++ NL         LP  LG E++G +EEVG  V  +  GD V   
Sbjct: 34  AAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVN 93
Query: 55  PILGKGG 61
           P+ G+G 
Sbjct: 94  PLQGEGN 100

>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 1  MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVF 52
          +A GI   + ++ SG    +  LP ILG E +GIVE VG+GV   K GDKV 
Sbjct: 41 VAVGICGTDDHVVSGTM--VTPLPVILGHEAAGIVESVGEGVTTVKPGDKVI 90

>pdb|4DUP|A Chain A, Crystal Structure Of A Quinone Oxidoreductase From Rhizobium Etli Cfn 42 Length = 353

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
           A G+N  +   R G YP   D   ILG E+SG +  VG GV  + VGDKV G  +   G 
Sbjct: 64  AIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVGPGVSGYAVGDKVCG--LANGGA 121
Query: 62  YSQ 64
           Y++
Sbjct: 122 YAE 124

>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 1  MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          +A G+   +  +R  +YP +P LPA+LG E SGI+E +G  V   +VGD V
Sbjct: 39 VATGMCHTDLIVRDQKYP-VP-LPAVLGHEGSGIIEAIGPNVTELQVGDHV 87

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL 57
           A+G+   + +   G +P  P+ P I G E  G V  VG GVKH K GD+V G P L
Sbjct: 59  ASGVCHTDLHAAEGDWPVKPNPPFIPGHEGVGFVSAVGSGVKHVKEGDRV-GIPWL 113

>pdb|2OBY|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (Tp53i3,Pig3) Length = 338

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK-HFKVGDKVFGKPILGKG 60
           A+ +N  +   R GQY   P    ILG E SG V E+G G + H+K+GD      +L  G
Sbjct: 42  ASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPGCQGHWKIGDTAMA--LLPGG 99
Query: 61  GYSQ 64
           G +Q
Sbjct: 100 GQAQ 103

>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase ( Tp53i3,Pig3) Length = 354

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK-HFKVGDKVFGKPILGKG 60
           A+ +N  +   R GQY   P    ILG E SG V E+G G + H+K+GD      +L  G
Sbjct: 58  ASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPGCQGHWKIGDTAMA--LLPGG 115
Query: 61  GYSQ 64
           G +Q
Sbjct: 116 GQAQ 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	64
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	5e-23
3gms_A	340	Putative NADPH:quinone reductase; structural genom	6e-23
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	5e-22
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	4e-21
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	2e-20
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	4e-20
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	4e-20
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	6e-20
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	8e-20
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	1e-19
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	1e-19
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	4e-19
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	4e-19
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	2e-18
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	5e-18
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	5e-18
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	5e-17
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	2e-16
4eye_A	342	Probable oxidoreductase; structural genomics, niai	4e-16
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	7e-16
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	1e-15
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	2e-14
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	1e-13
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	2e-12
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	2e-11
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	2e-11
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	4e-11
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	5e-11
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	1e-10
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	1e-10
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	1e-10
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	2e-10
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	6e-10
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	9e-10
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	9e-10
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	1e-09
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	1e-09
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	1e-09
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	2e-09
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	4e-09
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	5e-09
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	5e-09
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	7e-09
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	7e-09
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	8e-09
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	6e-08
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	7e-08
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	8e-08
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	1e-07
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	2e-07
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	3e-07
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	4e-07
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	5e-07
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	5e-07
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	8e-07
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	1e-06
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	4e-06
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	6e-06
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	2e-05
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	2e-04
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	6e-04

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 88.0 bits (219), Expect = 5e-23
 Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
           A G+NPVETYIRSG Y   P LP   G++V+G++E VG     FK GD+VF    +  GG
Sbjct: 66  ACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTIS-GG 124

Query: 62  YSQ 64
           Y++
Sbjct: 125 YAE 127

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 87.2 bits (217), Expect = 6e-23
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
              INP +    +G Y +   LP I G E  GIVE VG  V    +G +V   P+ G+G 
Sbjct: 41  VRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFVSRELIGKRVL--PLRGEGT 98

Query: 62  YSQ 64
           + +
Sbjct: 99  WQE 101

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 85.0 bits (211), Expect = 5e-22
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 2   AAGINPVETYIRSGQYPNLP-DLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG---KPIL 57
           A+G NP++  IR+G+ P+    LPAILG +++G V  VG  V  F+VGD VFG       
Sbjct: 41  ASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVGPEVDSFRVGDAVFGLTGGVGG 100

Query: 58  GKGGYSQ 64
            +G ++Q
Sbjct: 101 LQGTHAQ 107

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 82.7 bits (205), Expect = 4e-21
 Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
           AA INP +  +  G Y  LP+LPA+ G E    V  VG  V   K GD V      G G 
Sbjct: 63  AAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGSNVTGLKPGDWVIPANA-GLGT 121

Query: 62  YSQ 64
           +  
Sbjct: 122 WRT 124

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 80.0 bits (198), Expect = 2e-20
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
          A GINPV+         N      + G + +G++ +VG  V    +G +V     L + G
Sbjct: 38 AIGINPVDWKFIKANPINWS-NGHVPGVDGAGVIVKVGAKVDSKMLGRRVAYHTSLKRHG 96

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 79.6 bits (197), Expect = 4e-20
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 2   AAGINPVETYIRSGQY----PNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL 57
           AA +NP++   R+G          +LP+ LG + SG V E+G  V +  +GDKV G    
Sbjct: 42  AASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELGSDVNNVNIGDKVMGIAGF 101

Query: 58  GK--GGYSQ 64
                 Y++
Sbjct: 102 PDHPCCYAE 110

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 80.0 bits (198), Expect = 4e-20
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
          A G+N ++  +R G   N P  P + G E SGIVE +G  VK +++GD+V     +    
Sbjct: 39 ACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKGYEIGDRVMA--FVNYNA 96

Query: 62 YSQ 64
          +++
Sbjct: 97 WAE 99

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 79.2 bits (196), Expect = 6e-20
 Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 6/65 (9%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV--FGKPILGK 59
          A G+N ++TY RSG YP  P LP+ LG E +G+VE VG  V  FKVGD+V     P+   
Sbjct: 37 AIGLNFIDTYYRSGLYP-APFLPSGLGAEGAGVVEAVGDEVTRFKVGDRVAYGTGPL--- 92

Query: 60 GGYSQ 64
          G YS+
Sbjct: 93 GAYSE 97

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 79.2 bits (196), Expect = 8e-20
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
          +  +NPV+T  R          P +LG +  G+VE VG  V  F  GD V+      + G
Sbjct: 41 SISVNPVDTKQRLMDVS---KAPRVLGFDAIGVVESVGNEVTMFNQGDIVYYSGSPDQNG 97

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 78.9 bits (195), Expect = 1e-19
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
           A  +NPV+  +R    P+      ++G + +GIV  VG  V  F+ GD+VF    + + G
Sbjct: 61  AVSVNPVDYKVRRSTPPDGT-DWKVIGYDAAGIVSAVGPDVTLFRPGDEVFYAGSIIRPG 119

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 78.4 bits (194), Expect = 1e-19
 Identities = 35/65 (53%), Positives = 42/65 (64%), Gaps = 6/65 (9%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV--FGKPILGK 59
          A GIN ++TYIRSG YP  P LP+ LGTE +GIV +VG GVKH K GD+V      +   
Sbjct: 37 AIGINFIDTYIRSGLYP-PPSLPSGLGTEAAGIVSKVGSGVKHIKAGDRVVYAQSAL--- 92

Query: 60 GGYSQ 64
          G YS 
Sbjct: 93 GAYSS 97

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 77.4 bits (191), Expect = 4e-19
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 15/78 (19%)

Query: 2   AAGINPVETYIRSGQYPNL--------------PDLPAILGTEVSGIVEEVGQGVKHFKV 47
           AA +NP++  +RSG                    + P  LG +VSG+V E G  VK+FK 
Sbjct: 59  AASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKP 118

Query: 48  GDKVFGK-PILGKGGYSQ 64
           GD+V+   P   +G  S+
Sbjct: 119 GDEVWAAVPPWKQGTLSE 136

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 77.2 bits (191), Expect = 4e-19
 Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
           A G+N  +   R G YP   D   ILG E+SG +  VG GV  + VGDKV G  +   G 
Sbjct: 64  AIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVGPGVSGYAVGDKVCG--LANGGA 121

Query: 62  YSQ 64
           Y++
Sbjct: 122 YAE 124

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 75.3 bits (186), Expect = 2e-18
 Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
            G+N +E+Y R G YP   + P +LG E SG V   G+GV +F+VGD+V
Sbjct: 44 YTGVNYIESYFRKGIYP--CEKPYVLGREASGTVVAKGKGVTNFEVGDQV 91

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 74.2 bits (183), Expect = 5e-18
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 2   AAGINPVETYIRSGQYPNLP--DLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGK 59
           A G+N ++TY R+G    L   + P ++G E + +VEEVG GV  F VG++V    +   
Sbjct: 37  AIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTDFTVGERV-CTCLPPL 95

Query: 60  GGYSQ 64
           G YSQ
Sbjct: 96  GAYSQ 100

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 74.2 bits (183), Expect = 5e-18
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK-HFKVGDKV-FGKPILGK 59
            A INP +     GQY          G E  G +   G        VG +V F   +   
Sbjct: 58  LASINPSDVAFIKGQYGQPRVKGRPAGFEGVGTIVAGGDEPYAKSLVGKRVAFATGLSNW 117

Query: 60  GGYSQ 64
           G +++
Sbjct: 118 GSWAE 122

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 71.6 bits (176), Expect = 5e-17
 Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 10/72 (13%)

Query: 2   AAGINPVETYIRSGQYPNLPDL---------PAILGTEVSGIVEEVGQGVKHFKVGDKVF 52
            + +NP +     G YP+ P            A  G E    V +VG  V   + GD V 
Sbjct: 42  GSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVI 101

Query: 53  GKPILGKGGYSQ 64
              +   G +  
Sbjct: 102 PSHV-NFGTWRT 112

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score = 69.9 bits (172), Expect = 2e-16
 Identities = 23/59 (38%), Positives = 34/59 (57%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG 60
          AA +N ++ ++R G       LP +LG + SG+V+ VG GV+ F  GD+V   P L  G
Sbjct: 36 AAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGFAPGDEVVINPGLSCG 94

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 68.8 bits (169), Expect = 4e-16
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
           AAG+   +  +  G+Y    + P + G E +G+V    +G    K GD+V        GG
Sbjct: 57  AAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSAPEGS-GIKPGDRVMA--FNFIGG 113

Query: 62  YSQ 64
           Y++
Sbjct: 114 YAE 116

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 68.4 bits (168), Expect = 7e-16
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK-HFKVGDKVFGKPILGKG 60
           A+ +N  +   R GQY   P    ILG E SG V E+G G + H+K+GD      +L  G
Sbjct: 58  ASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPGCQGHWKIGDTAMA--LLPGG 115

Query: 61  GYSQ 64
           G +Q
Sbjct: 116 GQAQ 119

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 67.4 bits (165), Expect = 1e-15
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG 53
          A  INP +T +R           A LGT+ +G V  VG  V H +VGD+V+G
Sbjct: 45 AVAINPSDTSMRGQ----FATPWAFLGTDYAGTVVAVGSDVTHIQVGDRVYG 92

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score = 64.6 bits (158), Expect = 2e-14
 Identities = 15/57 (26%), Positives = 26/57 (45%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILG 58
           A  +N  +  +           P +  +++SG+VE VG+ V  F+ GD+V      G
Sbjct: 62  AVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGKSVTRFRPGDRVISTFAPG 118

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 61.9 bits (151), Expect = 1e-13
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK-HFKVGDKVFGKPILGKG 60
             G+N  +    +G+Y      P  +G E  G V  +G      + VG  V     +  G
Sbjct: 62  FVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSASARYTVGQAVAY---MAPG 118

Query: 61  GYSQ 64
            +++
Sbjct: 119 SFAE 122

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 58.4 bits (141), Expect = 2e-12
 Identities = 16/91 (17%), Positives = 25/91 (27%), Gaps = 30/91 (32%)

Query: 2   AAGINPVETYIRSGQYP----------------------------NLPDLPAILGTEVSG 33
           A+ +NP +  +  G                                  D    +G E +G
Sbjct: 41  ASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRSMAGRLDASMPVGNEGAG 100

Query: 34  IVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ 64
           +V E G       +  K      +G   YSQ
Sbjct: 101 VVVEAGSSPAAQALMGKTVA--AIGGAMYSQ 129

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score = 56.0 bits (136), Expect = 2e-11
 Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 11 YIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          Y  SG  P     P ILG   +GIVE VG+GV   K GD V
Sbjct: 49 YTLSGADPE-GCFPVILGHLGAGIVESVGEGVTKLKAGDTV 88

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score = 55.6 bits (135), Expect = 2e-11
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 11 YIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
           +R  +YP    LPA+LG E SGI+E +G  V   +VGD V
Sbjct: 49 IVRDQKYP--VPLPAVLGHEGSGIIEAIGPNVTELQVGDHV 87

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 55.2 bits (133), Expect = 4e-11
 Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 17/77 (22%)

Query: 1   MAAGINPVETYIRSGQY-----------------PNLPDLPAILGTEVSGIVEEVGQGVK 43
           MA+ IN    +    +                          +LG++ SG+V   G GV+
Sbjct: 70  MASSINYNTVWSAMFEPIPTFHFLKQNARQGGWATRHDQPYHVLGSDCSGVVVRTGIGVR 129

Query: 44  HFKVGDKVFGKPILGKG 60
            +K GD V   P     
Sbjct: 130 RWKPGDHVIVHPAHVDE 146

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score = 54.5 bits (132), Expect = 5e-11
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 11 YIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
               +       P +LG E +GIVE VG GV +FK GDKV
Sbjct: 51 NATDPKKK--ALFPVVLGHECAGIVESVGPGVTNFKPGDKV 89

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score = 53.8 bits (130), Expect = 1e-10
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 11 YIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          ++ SG       LP I G E +GIVE +G+GV   + GDKV
Sbjct: 51 HVVSGTLV--TPLPVIAGHEAAGIVESIGEGVTTVRPGDKV 89

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 54.0 bits (130), Expect = 1e-10
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 7/62 (11%)

Query: 2   AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
           AAG+N  +  I  G YP      A LG+E +G+V E G GV     GD+V G   +    
Sbjct: 247 AAGVNFRDALIALGMYPG----VASLGSEGAGVVVETGPGVTGLAPGDRVMG---MIPKA 299

Query: 62  YS 63
           + 
Sbjct: 300 FG 301

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score = 53.8 bits (130), Expect = 1e-10
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 11 YIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
           +     P     P ILG E  G+VE +G GV   K GDKV
Sbjct: 52 SVLKEIIP--SKFPVILGHEAVGVVESIGAGVTCVKPGDKV 90

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score = 53.0 bits (128), Expect = 2e-10
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 12  IRSGQYPNL--PDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILG 58
           +  G +  L  P LP  LG E  G +EEV +GV+  + GD V   P + 
Sbjct: 60  LVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVT 108

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 51.7 bits (124), Expect = 6e-10
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 17/68 (25%)

Query: 1   MAAGIN----------------PVETYIRSGQYPNLPDLP-AILGTEVSGIVEEVGQGVK 43
           MA+ +N                 +E Y R        DLP  ++G++++G+V   G GV 
Sbjct: 78  MASSVNYNSVHTSIFEPLSTFGFLERYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVN 137

Query: 44  HFKVGDKV 51
            ++ GD+V
Sbjct: 138 AWQAGDEV 145

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score = 51.1 bits (123), Expect = 9e-10
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 24  PAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL 57
           P  LG E  GIV E G  V+    G ++ G P +
Sbjct: 76  PVTLGHEFCGIVVEAGSAVRDIAPGARITGDPNI 109

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score = 51.1 bits (123), Expect = 9e-10
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 11 YIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          Y            P +LG E +GIVE VG GV  F+ G+KV
Sbjct: 51 YHLFEGKHKDG-FPVVLGHEGAGIVESVGPGVTEFQPGEKV 90

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score = 51.1 bits (123), Expect = 1e-09
 Identities = 16/46 (34%), Positives = 20/46 (43%)

Query: 13 RSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILG 58
                    LP  LG E++G +EEVG  V  +  GD V   P  G
Sbjct: 52 LRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQG 97

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score = 50.7 bits (122), Expect = 1e-09
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 12 IRSGQYPNLPD-LPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILG 58
          +           LP  LG E  G V E+G+GV  F VGD V      G
Sbjct: 44 VMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGVGDAVAVYGPWG 91

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score = 50.7 bits (122), Expect = 1e-09
 Identities = 15/36 (41%), Positives = 18/36 (50%)

Query: 22 DLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL 57
            P  LG E SG ++ VG GV     GD V   P+L
Sbjct: 52 YYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLL 87

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score = 49.9 bits (120), Expect = 2e-09
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL 57
          P I+G EV+G V E+G GV+  +VGD V  +  +
Sbjct: 62 PQIMGHEVAGEVVEIGPGVEGIEVGDYVSVETHI 95

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score = 49.2 bits (118), Expect = 4e-09
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)

Query: 11  YIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH-----FKVGDKV 51
           ++  G+ P +P LP ILG E +G V EV    +       K GD +
Sbjct: 60  HMFRGEDPRVP-LPIILGHEGAGRVVEVNGEKRDLNGELLKPGDLI 104

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score = 48.8 bits (117), Expect = 5e-09
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 24  PAILGTEVSGIVEEVGQGVKHFKVGDKV 51
             +LG E +G V  V   VK  KVGD+V
Sbjct: 73  DHVLGHESAGEVIAVHPSVKSIKVGDRV 100

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 48.7 bits (117), Expect = 5e-09
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 13/63 (20%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
          A G+N  +  +R G Y      P I G EV G+V            G +     ++ +GG
Sbjct: 34 AVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV-----------EGRRYAA--LVPQGG 80

Query: 62 YSQ 64
           ++
Sbjct: 81 LAE 83

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score = 48.4 bits (116), Expect = 7e-09
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          P ++G E SG V +VG+ VKH K GD+V
Sbjct: 61 PMVIGHEASGTVVKVGKNVKHLKKGDRV 88

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score = 48.7 bits (117), Expect = 7e-09
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL 57
          P + G E SG+VE VG GV+  +VGD V  +  +
Sbjct: 58 PLVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHI 91

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score = 48.4 bits (116), Expect = 8e-09
 Identities = 17/28 (60%), Positives = 20/28 (71%)

Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          P +LG E SG VE+VG  VKH K GD+V
Sbjct: 64 PMVLGHEASGTVEKVGSSVKHLKPGDRV 91

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score = 46.0 bits (110), Expect = 6e-08
 Identities = 23/37 (62%), Positives = 25/37 (67%)

Query: 15 GQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          G +P  P LP I G E  GIVEEVG GV H KVGD+V
Sbjct: 47 GDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRV 83

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score = 46.0 bits (110), Expect = 7e-08
 Identities = 18/37 (48%), Positives = 20/37 (54%)

Query: 15 GQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          G +P  P LP I G E  G V  VG GV   K GD+V
Sbjct: 49 GDWPVKPTLPFIPGHEGVGYVSAVGSGVSRVKEGDRV 85

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score = 45.7 bits (109), Expect = 8e-08
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 12 IRSGQYPNLPD-LPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILG 58
          +  G        LP ILG E +G + EVG+ +   K GD V      G
Sbjct: 47 VWKGVEAKQGFRLPIILGHENAGTIVEVGE-LAKVKKGDNVVVYATWG 93

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score = 45.2 bits (108), Expect = 1e-07
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query: 15 GQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          G +P    LP + G E +G+V  +G+ VK +K+GD  
Sbjct: 52 GDWPLPVKLPLVGGHEGAGVVVGMGENVKGWKIGDYA 88

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score = 44.7 bits (106), Expect = 2e-07
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 6/47 (12%)

Query: 17  YPNLPDLPAILGTEVSGIVEEVGQGV------KHFKVGDKVFGKPIL 57
           YP L   P  LG E SG+V E G         K F++G+ V  + +L
Sbjct: 85  YPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEML 131

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 44.1 bits (105), Expect = 3e-07
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 24  PAILGTEVSGIVEEVGQGVKHFKVGDKV 51
           P + G E+ G V  VG  V+ +  GD V
Sbjct: 77  PCVPGHEIVGRVVAVGDQVEKYAPGDLV 104

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 43.3 bits (103), Expect = 4e-07
 Identities = 15/28 (53%), Positives = 16/28 (57%)

Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          P + G EV G V EVG  V  F VGD V
Sbjct: 64 PMVPGHEVVGEVVEVGSDVSKFTVGDIV 91

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 43.3 bits (103), Expect = 5e-07
 Identities = 17/28 (60%), Positives = 23/28 (82%)

Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          P I G E++GI++EVG+GVK FK+GD V
Sbjct: 59 PMIPGHEIAGIIKEVGKGVKKFKIGDVV 86

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score = 43.3 bits (103), Expect = 5e-07
 Identities = 16/26 (61%), Positives = 17/26 (65%)

Query: 26 ILGTEVSGIVEEVGQGVKHFKVGDKV 51
          ILG E  G V EVG  VK FK GD+V
Sbjct: 56 ILGHEAVGEVVEVGSEVKDFKPGDRV 81

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score = 42.6 bits (101), Expect = 8e-07
 Identities = 11/26 (42%), Positives = 19/26 (73%)

Query: 26 ILGTEVSGIVEEVGQGVKHFKVGDKV 51
          +LG E++G V E G+ V++ ++GD V
Sbjct: 64 VLGHEITGEVIEKGRDVENLQIGDLV 89

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score = 42.6 bits (101), Expect = 1e-06
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 26 ILGTEVSGIVEEVGQGVKHFKVGDKV 51
          +LG E++G V E G  V+   +GD V
Sbjct: 63 VLGHEITGEVVEKGSDVELMDIGDLV 88

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score = 40.6 bits (96), Expect = 4e-06
 Identities = 15/28 (53%), Positives = 17/28 (60%)

Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKV 51
          P + G E+ G V EVG  VK   VGDKV
Sbjct: 71 PLVPGHEIVGEVTEVGSKVKKVNVGDKV 98

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score = 40.4 bits (95), Expect = 6e-06
 Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 2/32 (6%)

Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55
            +LG E  G+V +        + GD V    
Sbjct: 58 HLVLGHEAVGVVVDPN--DTELEEGDIVVPTV 87

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score = 38.9 bits (91), Expect = 2e-05
 Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 21 PDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILG 58
               +LG E  G+VEE   G   F  GD V      G
Sbjct: 58 GKDFLVLGHEAIGVVEESYHG---FSQGDLVMPVNRRG 92

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512

 Score = 36.4 bits (84), Expect = 2e-04
 Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 4/52 (7%)

Query: 2    AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG 53
               +N  +  + +G+        +I G  ++       +       G +V G
Sbjct: 1568 YTSLNFRDVMLATGKLSP----DSIPGKWLTRDCMLGMEFSGRDASGRRVMG 1615

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 34.8 bits (81), Expect = 6e-04
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 24 PAILGTEVSGIVEEVGQGV-KHFKVGDKV 51
          P ++G E+ G V ++G       KVG +V
Sbjct: 63 PLVVGHEIVGKVVKLGPKSNSGLKVGQRV 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	64
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	99.71
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	99.7
3gms_A	340	Putative NADPH:quinone reductase; structural genom	99.7
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	99.69
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	99.69
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	99.69
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	99.68
4eye_A	342	Probable oxidoreductase; structural genomics, niai	99.68
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	99.68
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	99.68
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	99.67
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	99.67
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	99.66
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	99.66
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	99.66
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	99.66
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	99.65
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	99.65
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	99.64
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	99.64
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	99.64
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	99.63
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	99.63
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	99.63
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	99.63
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	99.63
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	99.63
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	99.63
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	99.63
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	99.62
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	99.62
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	99.62
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	99.62
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	99.61
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	99.61
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	99.61
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	99.61
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	99.6
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	99.6
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	99.6
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	99.6
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	99.6
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	99.6
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	99.59
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	99.59
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	99.59
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	99.59
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	99.58
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	99.57
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	99.56
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	99.56
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	99.55
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	99.54
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	99.53
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	99.53
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.53
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	99.52
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	99.51
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	99.5
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	99.49
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	99.49
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	99.47
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	99.42
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	99.32
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	99.31
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	99.22
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	99.15
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	98.97
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	98.79
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.94
1g31_A	111	GP31; chaperone, CO-chaperonin, groes, in VIVO pro	94.06
3nx6_A	95	10KDA chaperonin; bacterial blight, XOO4289, groes	93.8
1pcq_O	97	Groes protein; chaperone; HET: ADP; 2.81A {Escheri	91.1
1we3_O	100	CPN10(groes); chaperonin, chaperone, groel, HSP60,	90.58
1p3h_A	99	10 kDa chaperonin; beta barrel, acidic cluster, fl	90.5

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=99.71  E-value=4.2e-17  Score=96.83  Aligned_cols=62  Identities=42%  Similarity=0.664  Sum_probs=55.1

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      ++++||++|++.+.|.++....+|.++|||++|+|+++|+++++|++||+|++...  .|+|+|
T Consensus        63 ~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~--~G~~ae  124 (353)
T 4dup_A           63 EAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVGPGVSGYAVGDKVCGLAN--GGAYAE  124 (353)
T ss_dssp             EEEEECHHHHHHHTTSSCCCTTSCSSSCCEEEEEEEEECTTCCSCCTTCEEEEECS--SCCSBS
T ss_pred             EEEecCHHHHHHhCCCCCCCCCCCCccccccEEEEEEECCCCCCCCCCCEEEEecC--CCceee
Confidence            47999999999999977654457899999999999999999999999999999876  688886

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=99.70  E-value=6.1e-17  Score=95.96  Aligned_cols=62  Identities=34%  Similarity=0.613  Sum_probs=55.3

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      ++++||++|++.+.+.++....+|.++|||++|+|+++|+++++|++||+|+++..  .|+|+|
T Consensus        38 ~a~gi~~~D~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~--~G~~ae   99 (349)
T 4a27_A           38 KACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKGYEIGDRVMAFVN--YNAWAE   99 (349)
T ss_dssp             EEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECTTCCSCCTTCEEEEECS--SCCSBS
T ss_pred             EEEecCHHHHHHhCCCcCCCCCCCccccceeEEEEEEeCCCCCCCCCCCEEEEecC--CCcceE
Confidence            47999999999999976544468999999999999999999999999999999876  688886

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=99.70  E-value=3.3e-17  Score=96.75  Aligned_cols=62  Identities=32%  Similarity=0.445  Sum_probs=54.9

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      ++++||++|++.+.+.++....+|.++|||++|+|+++|+++++|++||+|+++..  .|+|+|
T Consensus        40 ~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~--~G~~ae  101 (340)
T 3gms_A           40 LVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFVSRELIGKRVLPLRG--EGTWQE  101 (340)
T ss_dssp             EEEECCHHHHGGGGTTTTTTSCSSBCCCSCCEEEEEEECTTSCGGGTTCEEEECSS--SCSSBS
T ss_pred             EEecCCHHHHHHhcCCCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEecCC--Ccccee
Confidence            47999999999999977644468999999999999999999999999999998765  688886

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=99.69  E-value=4.4e-17  Score=96.11  Aligned_cols=53  Identities=30%  Similarity=0.475  Sum_probs=48.1

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +|++||++|+++++|.++.  ++|.++|||++|+|+++|++|++|++||+|+...
T Consensus        34 ~a~gic~~D~~~~~G~~~~--~~p~i~GhE~aG~V~~vG~~V~~~~~GdrV~~~~   86 (348)
T 4eez_A           34 EYCGVCHTDLHVAAGDFGN--KAGTVLGHEGIGIVKEIGADVSSLQVGDRVSVAW   86 (348)
T ss_dssp             EEEECCHHHHHHHTTTTCC--CTTCBCCSEEEEEEEEECTTCCSCCTTCEEEEES
T ss_pred             EEEEECHHHHHHhcCCCCC--CCCcccceeEEEEEEEECceeeecccCCeEeecc
Confidence            4899999999999997754  6799999999999999999999999999998754

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=99.69  E-value=1e-16  Score=95.18  Aligned_cols=62  Identities=39%  Similarity=0.614  Sum_probs=53.2

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCC-CCCCCCCEEEEecCCCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGV-KHFKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v-~~~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      ++++||++|++...|.++....+|.++|||++|+|+++|++| ++|++||+|+++..  .|+|+|
T Consensus        57 ~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~~--~G~~ae  119 (354)
T 2j8z_A           57 AASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPGCQGHWKIGDTAMALLP--GGGQAQ  119 (354)
T ss_dssp             EEEECCHHHHHHHHTSSCCCTTSCSSSCSEEEEEEEEECSCC--CCCTTCEEEEECS--SCCSBS
T ss_pred             EEeecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEECCCcCCCCCCCCEEEEecC--CCccee
Confidence            479999999999998765433568999999999999999999 99999999999865  588886

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=99.69  E-value=1.2e-16  Score=94.85  Aligned_cols=63  Identities=38%  Similarity=0.550  Sum_probs=54.3

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      ++++||++|++.+.|.++....+|.++|||++|+|+++|+++++|++||+|++... ..|+|+|
T Consensus        62 ~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~-~~G~~ae  124 (357)
T 1zsy_A           62 LAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGSNVTGLKPGDWVIPANA-GLGTWRT  124 (357)
T ss_dssp             EEEECCHHHHHHHHTCSSCCCCSSEECCSCCEEEEEEECTTCCSCCTTCEEEESSS-CSCCSBS
T ss_pred             EECCCCHHHhhHhcCCCCCCCCCCccccceEEEEEEEeCCCCCCCCCCCEEEEcCC-CCcccee
Confidence            47999999999999876543357899999999999999999999999999998753 3588886

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=99.68  E-value=9.2e-17  Score=93.99  Aligned_cols=63  Identities=25%  Similarity=0.341  Sum_probs=55.0

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC-CCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL-GKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~-~~G~~ae   64 (64)
                      ++++||++|++.+.+.++. ..+|.++|||++|+|+++|+++++|++||+|++.... ..|+|+|
T Consensus        37 ~a~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~G~~ae  100 (315)
T 3goh_A           37 QAIGINPVDWKFIKANPIN-WSNGHVPGVDGAGVIVKVGAKVDSKMLGRRVAYHTSLKRHGSFAE  100 (315)
T ss_dssp             EEEEECHHHHHHHHHCTTC-CCTTCCCCSEEEEEEEEECTTSCGGGTTCEEEEECCTTSCCSSBS
T ss_pred             EEEecCHHHHHHHcCCCCc-CCCCCEeeeeeEEEEEEeCCCCCCCCCCCEEEEeCCCCCCccccc
Confidence            4799999999999987653 3679999999999999999999999999999998743 4688886

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=99.68  E-value=1.2e-16  Score=94.52  Aligned_cols=61  Identities=30%  Similarity=0.511  Sum_probs=54.0

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      +|++||++|++++.|.++....+|.++|||++|+|+++|++++ |++||+|++...  .|+|+|
T Consensus        56 ~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~-~~vGDrV~~~~~--~G~~ae  116 (342)
T 4eye_A           56 KAAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSAPEGSG-IKPGDRVMAFNF--IGGYAE  116 (342)
T ss_dssp             EEEECCHHHHHHHTTCSSSCCCSSBCCCSEEEEEEEECCTTSS-CCTTCEEEEECS--SCCSBS
T ss_pred             EEEecCHHHHHHhcCCCCCCCCCCCccceeEEEEEEEECCCCC-CCCCCEEEEecC--CCcceE
Confidence            4799999999999997754446899999999999999999999 999999999875  688886

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=99.68  E-value=2.2e-16  Score=93.82  Aligned_cols=63  Identities=49%  Similarity=0.886  Sum_probs=53.8

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      ++++||++|++++.|.++....+|.++|||++|+|+++|+++++|++||+|++... ..|+|||
T Consensus        65 ~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~-~~G~~ae  127 (351)
T 1yb5_A           65 HACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSST-ISGGYAE  127 (351)
T ss_dssp             EEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCTTCCTTCEEEESCC-SSCSSBS
T ss_pred             EEEecCHHHHHHhCCCCCCCCCCCCcCCceeEEEEEEECCCCCCCCCCCEEEEeCC-CCCccee
Confidence            47999999999999876433357899999999999999999999999999998753 2588876

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=99.68  E-value=1.8e-16  Score=94.45  Aligned_cols=54  Identities=26%  Similarity=0.456  Sum_probs=48.8

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      +|++||++|++++.+.++....+|.++|||++|+|+++|++|++|++||+|++.
T Consensus        61 ~a~gi~~~D~~~~~g~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~vGDrV~~~  114 (363)
T 3uog_A           61 LAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGKSVTRFRPGDRVIST  114 (363)
T ss_dssp             EEEECCHHHHHHHHHCTTCCCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEEC
T ss_pred             EEEecCHHHHHHhcCCCCCCCCCCcCcccceEEEEEEECCCCCCCCCCCEEEEe
Confidence            479999999999998765444689999999999999999999999999999987

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=99.67  E-value=1.3e-16  Score=93.89  Aligned_cols=59  Identities=41%  Similarity=0.697  Sum_probs=52.8

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      ++++||++|++++.|.++.  .+|.++|||++|+|+++|+++++|++||+|+++..   |+|+|
T Consensus        43 ~a~gi~~~D~~~~~G~~~~--~~P~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~---G~~ae  101 (334)
T 3qwb_A           43 KYTGVNYIESYFRKGIYPC--EKPYVLGREASGTVVAKGKGVTNFEVGDQVAYISN---STFAQ  101 (334)
T ss_dssp             EEEECCTTHHHHHHTSSCC--CSSEECCSEEEEEEEEECTTCCSCCTTCEEEEECS---SCSBS
T ss_pred             EEEecCHHHHHHHCCCCCC--CCCCccccceEEEEEEECCCCCCCCCCCEEEEeeC---CcceE
Confidence            4799999999999997653  57999999999999999999999999999998875   88876

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=99.67  E-value=3.4e-16  Score=92.93  Aligned_cols=63  Identities=27%  Similarity=0.380  Sum_probs=53.1

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCC---------cccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLP---------AILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~---------~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      ++++||++|++++.|.++....+|         .++|||++|+|+++|++|++|++||+|++... ..|+|+|
T Consensus        41 ~a~gi~~~D~~~~~g~~~~~~~~P~~~~~~~p~~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~-~~G~~ae  112 (364)
T 1gu7_A           41 LGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHV-NFGTWRT  112 (364)
T ss_dssp             EEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCEEEEEEECTTCCSCCTTCEEEESSS-CCCCSBS
T ss_pred             EeccCCHHHHHHhcCCCCCCCCCCccccccCcccccCceeEEEEEEeCCCCCcCCCCCEEEecCC-CCCcchh
Confidence            479999999999998765323456         89999999999999999999999999998753 3588886

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=99.66  E-value=3.3e-16  Score=92.02  Aligned_cols=62  Identities=50%  Similarity=0.759  Sum_probs=54.0

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      ++++||++|++++.|.++. ..+|.++|||++|+|+++|+++++|++||+|+.... ..|+|+|
T Consensus        36 ~a~gi~~~D~~~~~g~~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~-~~G~~ae   97 (325)
T 3jyn_A           36 KAIGLNFIDTYYRSGLYPA-PFLPSGLGAEGAGVVEAVGDEVTRFKVGDRVAYGTG-PLGAYSE   97 (325)
T ss_dssp             EEEECCHHHHHHHHTSSCC-SSSSBCCCCCEEEEEEEECTTCCSCCTTCEEEESSS-SSCCSBS
T ss_pred             EEEecCHHHHHHHCCCCCC-CCCCCCCCceeEEEEEEECCCCCCCCCCCEEEEecC-CCccccc
Confidence            4799999999999997654 367899999999999999999999999999998762 3688886

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=99.66  E-value=5.7e-17  Score=96.01  Aligned_cols=64  Identities=25%  Similarity=0.220  Sum_probs=55.5

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCC-CCCCCCCEEEEecCC-CCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGV-KHFKVGDKVFGKPIL-GKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v-~~~~~Gd~V~~~~~~-~~G~~ae   64 (64)
                      ++++||++|++.+.|.++....+|.++|||++|+|+++|++| ++|++||+|++.... ..|+|+|
T Consensus        57 ~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~g~~~~G~~ae  122 (349)
T 3pi7_A           57 NLASINPSDVAFIKGQYGQPRVKGRPAGFEGVGTIVAGGDEPYAKSLVGKRVAFATGLSNWGSWAE  122 (349)
T ss_dssp             EEEECCHHHHHHHTTCSSSCBCTTSBCCSEEEEEEEEECSSHHHHHHTTCEEEEECTTSSCCSSBS
T ss_pred             EEecCCHHHHHHhcccCCCCCCCCCCccceEEEEEEEECCCccCCCCCCCEEEEeccCCCCcccee
Confidence            479999999999999765444689999999999999999999 999999999988632 4688886

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=99.66  E-value=1.9e-16  Score=94.40  Aligned_cols=61  Identities=23%  Similarity=0.346  Sum_probs=53.2

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCC-CCCCCCEEEEecCCCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK-HFKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~-~~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      +|++||++|++++.|.++....+|.++|||++|+|+++|++|+ +|++||+|++...   |+|+|
T Consensus        61 ~a~gi~~~D~~~~~G~~~~~~~~P~i~G~E~~G~V~~vG~~V~~~~~vGdrV~~~~~---G~~ae  122 (362)
T 2c0c_A           61 RFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSASARYTVGQAVAYMAP---GSFAE  122 (362)
T ss_dssp             EEEECCTTHHHHHTTTTCTTCCSCEECCSEEEEEEEEECTTGGGTCCTTCEEEEECS---CCSBS
T ss_pred             EEeccCHHHHHHhcCCCCCCCCCCCCCCceeEEEEEEECCCccCCCCCCCEEEEccC---Cccee
Confidence            4799999999999987643335789999999999999999999 9999999998765   88886

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=99.66  E-value=5.2e-16  Score=91.56  Aligned_cols=53  Identities=38%  Similarity=0.544  Sum_probs=47.5

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG   53 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~   53 (64)
                      ++++||++|++++.+.++....+|.++|||++|+|+++|+++++|++||+|..
T Consensus        35 ~a~gi~~~D~~~~~g~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~   87 (340)
T 3s2e_A           35 EASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSRVKEGDRVGV   87 (340)
T ss_dssp             EEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECSSCCSCCTTCEEEE
T ss_pred             EEeccCHHHHHHHcCCCCCCCCCCcccCCcceEEEEEECCCCCcCCCCCEEEe
Confidence            47999999999999987654468999999999999999999999999999953

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=99.65  E-value=3.1e-16  Score=92.46  Aligned_cols=53  Identities=28%  Similarity=0.400  Sum_probs=47.7

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +|++||++|++.+.+..+.  .+|.++|||++|+|+++|++|+++++||+|+...
T Consensus        33 ~a~gi~~sD~~~~~g~~~~--~~P~i~G~E~~G~V~~vG~~V~~~~~GdrV~~~~   85 (346)
T 4a2c_A           33 ASSGLCGSDLPRIFKNGAH--YYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVP   85 (346)
T ss_dssp             EEEECCTTHHHHHHSSCSS--SSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECC
T ss_pred             EEEEECHHHHHHHcCCCCC--CCCccccEEEEEEEEEECCCcccccCCCeEEeee
Confidence            4899999999999886543  6799999999999999999999999999998865

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=99.65  E-value=5.5e-16  Score=92.46  Aligned_cols=63  Identities=30%  Similarity=0.493  Sum_probs=53.7

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC-CCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL-GKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~-~~G~~ae   64 (64)
                      ++++||++|++++.+.++. ..+|.++|||++|+|+++|++|++|++||+|++.... ..|+|+|
T Consensus        60 ~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~G~~ae  123 (363)
T 4dvj_A           60 KAVSVNPVDYKVRRSTPPD-GTDWKVIGYDAAGIVSAVGPDVTLFRPGDEVFYAGSIIRPGTNAE  123 (363)
T ss_dssp             EEEECCHHHHHHHHHCCC---CCSBCCCCCEEEEEEEECTTCCSCCTTCEEEECCCTTSCCSCBS
T ss_pred             EEEEeCHHHHHHHcCCCCC-CCCCCcccceeEEEEEEeCCCCCCCCCCCEEEEccCCCCCccceE
Confidence            4799999999999987653 3678999999999999999999999999999987532 4688886

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=99.64  E-value=7.6e-16  Score=91.17  Aligned_cols=64  Identities=44%  Similarity=0.691  Sum_probs=53.8

Q ss_pred             CeeeeCHHHHHHHhCCCCCC-CCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC---CCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNL-PDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL---GKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~-~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~---~~G~~ae   64 (64)
                      ++++||++|++++.+..+.. ..+|.++|||++|+|+++|+++++|++||+|++....   ..|+|+|
T Consensus        40 ~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~g~~~~~G~~ae  107 (343)
T 3gaz_A           40 EASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVGPEVDSFRVGDAVFGLTGGVGGLQGTHAQ  107 (343)
T ss_dssp             EEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEEECCSSTTCCCSSBS
T ss_pred             EEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEECCCCCCCCCCCEEEEEeCCCCCCCcceee
Confidence            47999999999998864321 3578999999999999999999999999999988642   3688886

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=99.64  E-value=6.2e-16  Score=91.39  Aligned_cols=53  Identities=38%  Similarity=0.639  Sum_probs=46.8

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG   53 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~   53 (64)
                      ++++||++|+++..+.++....+|.++|||++|+|+++|++|++|++||+|+.
T Consensus        35 ~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~   87 (343)
T 2eih_A           35 KAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGFAPGDEVVI   87 (343)
T ss_dssp             EEEECCHHHHHHHHTSSSTTCCSSEECCSEEEEEEEEECSSCCSCCTTCEEEE
T ss_pred             EEEEeCHHHHHHhcCCCCCCCCCCcccccceEEEEEEECCCCCCCCCCCEEEE
Confidence            47999999999999876532357899999999999999999999999999994

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=99.64  E-value=1.4e-15  Score=89.87  Aligned_cols=54  Identities=46%  Similarity=0.676  Sum_probs=47.6

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      ++++||++|++.+.+.++....+|.++|||++|+|+++|++|++|++||+|+..
T Consensus        33 ~a~gi~~~D~~~~~g~~~~~~~~p~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~   86 (339)
T 1rjw_A           33 KACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIP   86 (339)
T ss_dssp             EEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTTCEEEEC
T ss_pred             EEEeEchhhHHHhcCCCCcCCCCCeeccccceEEEEEECCCCCcCCCCCEEEEe
Confidence            479999999999998765333578999999999999999999999999999864

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.2e-15  Score=90.35  Aligned_cols=54  Identities=30%  Similarity=0.426  Sum_probs=47.5

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      ++++||++|++.+.+.++....+|.++|||++|+|+++|++|++|++||+|+..
T Consensus        38 ~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~~GdrV~~~   91 (347)
T 2hcy_A           38 KYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKGWKIGDYAGIK   91 (347)
T ss_dssp             EEEEECHHHHHHHHTCSSSCCCSSEECCCEEEEEEEEECTTCCSCCTTCEEEEC
T ss_pred             EEEEechhHHHHhcCCCCCCCCCCcccCccceEEEEEECCCCCCCcCCCEEEEe
Confidence            479999999999998765333578999999999999999999999999999864

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=99.63  E-value=1.6e-15  Score=90.61  Aligned_cols=64  Identities=39%  Similarity=0.593  Sum_probs=52.8

Q ss_pred             CeeeeCHHHHHHHhCCCC--------------CCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC-CCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYP--------------NLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL-GKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~--------------~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~-~~G~~ae   64 (64)
                      +|++||++|++++.|.++              ....+|.++|||++|+|+++|++|++|++||+|++.... ..|+|||
T Consensus        58 ~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P~v~G~E~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~G~~ae  136 (375)
T 2vn8_A           58 HAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVPPWKQGTLSE  136 (375)
T ss_dssp             EEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCSBCCCCEEEEEEEEECTTCCSCCTTCEEEEECCTTSCCSSBS
T ss_pred             EEEEcCHHHHHHhccCccccccccccccccccccccCCcccceeeeEEEEEeCCCCCCCCCCCEEEEecCCCCCcccee
Confidence            479999999999987531              111378999999999999999999999999999997642 3688886

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=99.63  E-value=1.2e-15  Score=90.09  Aligned_cols=55  Identities=35%  Similarity=0.464  Sum_probs=48.2

Q ss_pred             CeeeeCHHHHHHHhCCCCCC-CCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNL-PDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~-~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      ++++||++|++++.+.++.. ..+|.++|||++|+|+++|++|++|++||+|+...
T Consensus        33 ~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   88 (345)
T 3jv7_A           33 TAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGVGDAVAVYG   88 (345)
T ss_dssp             EEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCCSCCTTCEEEECC
T ss_pred             EEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCCCCCCCCEEEEec
Confidence            47999999999999875422 36789999999999999999999999999999864

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=99.63  E-value=7.3e-16  Score=90.74  Aligned_cols=63  Identities=41%  Similarity=0.655  Sum_probs=48.7

Q ss_pred             CeeeeCHHHHHHHhCCC-CCC-CCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQY-PNL-PDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~-~~~-~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      ++++||++|++++.|.+ +.. ..+|.++|||++|+|+++|+++++|++||+|+.... ..|+|+|
T Consensus        36 ~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~-~~G~~ae  100 (333)
T 1wly_A           36 TAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTDFTVGERVCTCLP-PLGAYSQ  100 (333)
T ss_dssp             EEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCCSCCTTCEEEECSS-SCCCSBS
T ss_pred             EEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCCCCCCCCEEEEecC-CCCccee
Confidence            47999999999998865 111 257899999999999999999999999999977642 2488886

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.63  E-value=1.5e-15  Score=89.18  Aligned_cols=62  Identities=56%  Similarity=0.884  Sum_probs=51.3

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      ++++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|++||+| +......|+|+|
T Consensus        36 ~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~vG~~v~~~~~GdrV-~~~g~~~G~~ae   97 (327)
T 1qor_A           36 KAIGINFIDTYIRSGLYPP-PSLPSGLGTEAAGIVSKVGSGVKHIKAGDRV-VYAQSALGAYSS   97 (327)
T ss_dssp             EEEECCHHHHHHHHTSSCC-SSSSBCCCSCEEEEEEEECTTCCSCCTTCEE-EESCCSSCCSBS
T ss_pred             EEEecCHHHHHHhCCCCCC-CCCCCCCCceeEEEEEEECCCCCCCCCCCEE-EECCCCCceeee
Confidence            4799999999999986642 2478999999999999999999999999999 443112588886

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=99.63  E-value=6.4e-16  Score=91.93  Aligned_cols=55  Identities=35%  Similarity=0.587  Sum_probs=47.5

Q ss_pred             CeeeeCHHHHHHHhCCCCC--CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~--~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +|++||++|++.+.|.++.  ...+|.++|||++|+|+++|++|++|++||+|+...
T Consensus        49 ~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~  105 (359)
T 1h2b_A           49 AGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHP  105 (359)
T ss_dssp             EEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCSCCTTCEEEECS
T ss_pred             EEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEECCCCCCCCCCCEEEeCC
Confidence            4799999999999986530  125789999999999999999999999999998764

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=99.63  E-value=1.5e-15  Score=89.91  Aligned_cols=61  Identities=31%  Similarity=0.500  Sum_probs=52.7

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC-CCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL-GKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~-~~G~~ae   64 (64)
                      ++++||++|++++.+.   ...+|.++|||++|+|+++|+++++|++||+|++.... ..|+|+|
T Consensus        40 ~a~gi~~~D~~~~~g~---~~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~G~~ae  101 (346)
T 3fbg_A           40 QSISVNPVDTKQRLMD---VSKAPRVLGFDAIGVVESVGNEVTMFNQGDIVYYSGSPDQNGSNAE  101 (346)
T ss_dssp             EEEEECHHHHHHTTSC---CSSSCBCCCCCEEEEEEEECTTCCSCCTTCEEEECCCTTSCCSSBS
T ss_pred             EEEEcCHHHHHHHhCC---CCCCCcCcCCccEEEEEEeCCCCCcCCCCCEEEEcCCCCCCcceeE
Confidence            4799999999998885   23578999999999999999999999999999987532 4688886

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=99.63  E-value=1.7e-15  Score=90.47  Aligned_cols=60  Identities=33%  Similarity=0.513  Sum_probs=51.5

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcc
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG   61 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~   61 (64)
                      +|++||++|++++.+.++. ..+|.++|||++|+|+++|++|++|++||+|+......||.
T Consensus        41 ~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~  100 (378)
T 3uko_A           41 LYTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRE  100 (378)
T ss_dssp             EEEEECHHHHHHHTTCCTT-CCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSS
T ss_pred             EEeecCHHHHHHhcCCCCC-CCCCccCCccceEEEEEeCCCCCcCCCCCEEEEecCCCCCC
Confidence            4799999999999987553 36799999999999999999999999999999877644443

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=99.62  E-value=9.4e-16  Score=89.97  Aligned_cols=64  Identities=34%  Similarity=0.530  Sum_probs=52.9

Q ss_pred             CeeeeCHHHHHHHhCC--CC--CCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC--CCcccCC
Q psy3510           1 MAAGINPVETYIRSGQ--YP--NLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL--GKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~--~~--~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~--~~G~~ae   64 (64)
                      ++++||++|++++.+.  ++  ....+|.++|||++|+|+++|+++++|++||+|++....  ..|+|+|
T Consensus        41 ~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~G~~ae  110 (321)
T 3tqh_A           41 HAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELGSDVNNVNIGDKVMGIAGFPDHPCCYAE  110 (321)
T ss_dssp             EEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEECTTCCSCCTTCEEEEECSTTTCCCCSBS
T ss_pred             EEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEeCCCCCCCCCCCEEEEccCCCCCCCcceE
Confidence            4799999999999882  11  122578999999999999999999999999999998642  4688886

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=99.62  E-value=1.7e-15  Score=90.54  Aligned_cols=53  Identities=34%  Similarity=0.646  Sum_probs=47.5

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +|++||++|++++.|.++.  .+|.++|||++|+|+++|+++++|++||+|++..
T Consensus        55 ~a~gi~~~D~~~~~G~~~~--~~p~v~G~e~~G~V~~vG~~v~~~~vGdrV~~~~  107 (370)
T 4ej6_A           55 EACGICGTDRHLLHGEFPS--TPPVTLGHEFCGIVVEAGSAVRDIAPGARITGDP  107 (370)
T ss_dssp             EEEECCHHHHHHHTTSSCC--CSSEECCCSEEEEEEEECTTCCSSCTTCEEEECC
T ss_pred             EEEeecHHHHHHHcCCCCC--CCCeecCcceEEEEEEECCCCCCCCCCCEEEECC
Confidence            4799999999999997643  6799999999999999999999999999999743

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=99.62  E-value=1.9e-15  Score=90.13  Aligned_cols=58  Identities=36%  Similarity=0.571  Sum_probs=50.1

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCc
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG   60 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G   60 (64)
                      ++++||++|++++.+.++  ..+|.++|||++|+|+++|++|++|++||+|++.....||
T Consensus        42 ~a~gi~~~D~~~~~g~~~--~~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg   99 (373)
T 1p0f_A           42 LASGICGSDSSVLKEIIP--SKFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCG   99 (373)
T ss_dssp             EEEECCHHHHHHHTTSSC--CCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCS
T ss_pred             eEEeecchhHHHhcCCCC--CCCCcccCcCceEEEEEECCCCCccCCCCEEEECCCCCCC
Confidence            479999999999998654  3578999999999999999999999999999987644444

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=99.62  E-value=2.4e-15  Score=89.40  Aligned_cols=52  Identities=33%  Similarity=0.427  Sum_probs=46.2

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG   53 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~   53 (64)
                      ++++||++|++.+.+.++. ..+|.++|||++|+|+++|++|++|++||+|+.
T Consensus        42 ~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~   93 (357)
T 2cf5_A           42 ICCGICHTDLHQTKNDLGM-SNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGV   93 (357)
T ss_dssp             EEEEECHHHHHHHTCTTTC-CCSSBCCCCEEEEEEEEECSSCCSCCTTCEEEE
T ss_pred             EEEeecchhhhhhcCCCCC-CCCCeecCcceeEEEEEECCCCCCCCCCCEEEE
Confidence            4799999999999886542 357899999999999999999999999999985

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=99.61  E-value=2e-15  Score=89.47  Aligned_cols=52  Identities=35%  Similarity=0.425  Sum_probs=45.8

Q ss_pred             CeeeeCHHHHH-HHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETY-IRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~-~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      ++++||++|++ +..+.++.  .+|.++|||++|+|+++|++|++|++||+|+..
T Consensus        32 ~a~gi~~~D~~~~~~g~~~~--~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~   84 (352)
T 3fpc_A           32 LAVAPCTSDIHTVFEGAIGE--RHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVP   84 (352)
T ss_dssp             EEEECCHHHHHHHHSCTTCC--CSSEECCCEEEEEEEEECTTCCSCCTTCEEEEC
T ss_pred             CEEeEcccchHHHhCCCCCC--CCCcccCCcceEEEEEECCCCCcCCCCCEEEEc
Confidence            47999999999 55776543  579999999999999999999999999999974

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=99.61  E-value=2.8e-15  Score=89.35  Aligned_cols=59  Identities=39%  Similarity=0.577  Sum_probs=50.4

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCc
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG   60 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G   60 (64)
                      ++++||++|++++.+.++. ..+|.++|||++|+|+++|++|++|++||+|+......||
T Consensus        39 ~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~V~~~~vGdrV~~~~~~~Cg   97 (373)
T 2fzw_A           39 IATAVCHTDAYTLSGADPE-GCFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCG   97 (373)
T ss_dssp             EEEECCHHHHHHHHTCCTT-CCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCS
T ss_pred             EEEEEchhhHHHhcCCCCC-CCCCccccccccEEEEEECCCCCCCCCCCEEEECCCCCCC
Confidence            4799999999999986543 2578999999999999999999999999999987644444

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=99.61  E-value=3e-15  Score=89.29  Aligned_cols=58  Identities=38%  Similarity=0.629  Sum_probs=49.8

Q ss_pred             CeeeeCHHHHH-HHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCc
Q psy3510           1 MAAGINPVETY-IRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG   60 (64)
Q Consensus         1 ~a~~l~~~D~~-~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G   60 (64)
                      ++++||++|++ ++.+.++  ..+|.++|||++|+|+++|++|++|++||+|+......||
T Consensus        41 ~a~gi~~~D~~~~~~g~~~--~~~P~v~GhE~~G~V~~vG~~V~~~~vGdrV~~~~~~~Cg   99 (374)
T 1cdo_A           41 IATGVCHTDLYHLFEGKHK--DGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCG   99 (374)
T ss_dssp             EEEECCHHHHHHHHTTCCT--TSCSEECCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCS
T ss_pred             eEEeechhhHHHHhCCCCC--CCCCcccCccceEEEEEECCCCccCCCCCEEEeCCCCCCC
Confidence            47999999999 8888654  3578999999999999999999999999999987644444

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=99.61  E-value=1.4e-15  Score=90.04  Aligned_cols=55  Identities=38%  Similarity=0.604  Sum_probs=46.9

Q ss_pred             CeeeeCHHHHHHHhCCCCC-------CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPN-------LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~-------~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      ++++||++|++++.+.++.       ...+|.++|||++|+|+++|++|++|++||+|+...
T Consensus        33 ~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   94 (347)
T 1jvb_A           33 EAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNP   94 (347)
T ss_dssp             EEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECC
T ss_pred             EEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEECCCCCCCCCCCEEEeCC
Confidence            4799999999998875441       125789999999999999999999999999997654

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=99.60  E-value=3.7e-15  Score=88.91  Aligned_cols=58  Identities=38%  Similarity=0.557  Sum_probs=49.8

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCc
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG   60 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G   60 (64)
                      ++++||++|++++.+.++.  .+|.++|||++|+|+++|++|++|++||+|+......||
T Consensus        41 ~a~gi~~~D~~~~~g~~~~--~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg   98 (374)
T 2jhf_A           41 VATGICRSDDHVVSGTLVT--PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCG   98 (374)
T ss_dssp             EEEECCHHHHHHHHTSSCC--CSSBCCCCSEEEEEEEECTTCCSCCTTCEEEECSSCCCS
T ss_pred             eEEeechhhHHHHcCCCCC--CCCcccCcCceEEEEEECCCCCCCCCCCEEEECCCCCCC
Confidence            4799999999999986543  378999999999999999999999999999987643344

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=99.60  E-value=4e-15  Score=88.76  Aligned_cols=52  Identities=31%  Similarity=0.387  Sum_probs=46.2

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG   53 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~   53 (64)
                      ++++||++|++.+.+.++. ..+|.++|||++|+|+++|++|++|++||+|+.
T Consensus        49 ~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~V~~~~vGDrV~~  100 (366)
T 1yqd_A           49 LYCGVCHSDLHSIKNDWGF-SMYPLVPGHEIVGEVTEVGSKVKKVNVGDKVGV  100 (366)
T ss_dssp             EEEEECHHHHHHHHTSSSC-CCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEE
T ss_pred             EEEeechhhHHHHcCCCCC-CCCCEecccceEEEEEEECCCCCcCCCCCEEEE
Confidence            4799999999999886542 357899999999999999999999999999985

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=99.60  E-value=3.3e-15  Score=89.04  Aligned_cols=58  Identities=38%  Similarity=0.592  Sum_probs=49.9

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcc
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG   61 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~   61 (64)
                      ++++||++|++++.+.++.  .+|.++|||++|+|+++|++|++|++||+|+... ..||.
T Consensus        39 ~a~gi~~~D~~~~~g~~~~--~~P~v~GhE~~G~V~~vG~~v~~~~~GdrV~~~~-~~Cg~   96 (371)
T 1f8f_A           39 VATGMCHTDLIVRDQKYPV--PLPAVLGHEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGK   96 (371)
T ss_dssp             EEEECCHHHHHHHTTSSCC--CSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECC-CCCSS
T ss_pred             EEeecCchhHHHHcCCCCC--CCCcccCcccceEEEEeCCCCCCCCCCCEEEecC-CCCCC
Confidence            4799999999999986542  5789999999999999999999999999999876 44443

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.60  E-value=3.2e-15  Score=89.40  Aligned_cols=53  Identities=23%  Similarity=0.317  Sum_probs=46.7

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      ++++||++|++++.+.++. ..+|.++|||++|+|+++|++|++|++||+|+..
T Consensus        55 ~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~  107 (369)
T 1uuf_A           55 AYCGVCHSDLHQVRSEWAG-TVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVG  107 (369)
T ss_dssp             EEEECCHHHHHHHHCTTSC-CCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEEC
T ss_pred             EEEeecHHHHHHhcCCCCC-CCCCeecccCceEEEEEECCCCCCCCCCCEEEEc
Confidence            4799999999999986543 2578999999999999999999999999999863

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=99.60  E-value=1.2e-15  Score=90.30  Aligned_cols=55  Identities=33%  Similarity=0.456  Sum_probs=46.9

Q ss_pred             CeeeeCHHHHHHHhC-CCC-CCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSG-QYP-NLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~-~~~-~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +|++||++|++.+.+ .++ ....+|.++|||++|+|+++|++|++|++||+|++..
T Consensus        37 ~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~   93 (348)
T 2d8a_A           37 LATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVEGIEVGDYVSVET   93 (348)
T ss_dssp             EEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTTCCSCCTTCEEEECC
T ss_pred             eEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCCCCcCCCCCEEEEcC
Confidence            479999999999988 432 1125789999999999999999999999999999864

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=99.60  E-value=4.2e-15  Score=87.86  Aligned_cols=54  Identities=31%  Similarity=0.375  Sum_probs=46.6

Q ss_pred             CeeeeCHHHHHHHhCCCCC-CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPN-LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~-~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      ++++||++|++.+.+.++. ...+|.++|||++|+|+++|++ ++|++||+|+...
T Consensus        36 ~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~-~~~~~GdrV~~~~   90 (344)
T 2h6e_A           36 GGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL-AKVKKGDNVVVYA   90 (344)
T ss_dssp             EEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT-CCCCTTCEEEECS
T ss_pred             EEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC-CCCCCCCEEEECC
Confidence            4799999999999986542 1257899999999999999999 9999999998764

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=99.59  E-value=3.5e-15  Score=88.64  Aligned_cols=54  Identities=28%  Similarity=0.308  Sum_probs=45.4

Q ss_pred             CeeeeCHHHHHHHhCC-CC-CCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQ-YP-NLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~-~~-~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      +|++||++|++++.+. +. ....+|.++|||++|+|+++|++|++|++||+|++.
T Consensus        48 ~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~  103 (363)
T 3m6i_A           48 RSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGEVIAVHPSVKSIKVGDRVAIE  103 (363)
T ss_dssp             EEEECCHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCCTTCEEEEC
T ss_pred             eEEeecHhhHHHHcCCCCCCccCCCCcccCcceEEEEEEECCCCCCCCCCCEEEEe
Confidence            4799999999988732 11 122578999999999999999999999999999985

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=99.59  E-value=4.7e-15  Score=86.88  Aligned_cols=62  Identities=19%  Similarity=0.275  Sum_probs=51.9

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC----CCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI----LGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~----~~~G~~ae   64 (64)
                      ++++||++|++.+.|.++....+|.++|||++|+|+++|  +++|++||+|++...    ...|+|+|
T Consensus        35 ~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~G--v~~~~vGdrV~~~~~~~g~~~~G~~ae  100 (324)
T 3nx4_A           35 HWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASE--DPRFHAGQEVLLTGWGVGENHWGGLAE  100 (324)
T ss_dssp             EEEEECHHHHHHHHTCTTCCCSSSBCCCSEEEEEEEEES--STTCCTTCEEEEECTTBTTTBCCSSBS
T ss_pred             EEEeCCHHHHhhhcCCCCCCCCCCccccceeEEEEEEeC--CCCCCCCCEEEEcccccCCCCCCceee
Confidence            479999999999999776444689999999999999998  578999999998641    14688886

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=99.59  E-value=5.3e-15  Score=88.94  Aligned_cols=52  Identities=27%  Similarity=0.379  Sum_probs=46.4

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      ++++||++|++++.+.++  ..+|.++|||++|+|+++|++|++|++||+|+..
T Consensus        40 ~a~gic~~D~~~~~G~~~--~~~p~v~GhE~~G~V~~vG~~v~~~~vGDrV~~~   91 (398)
T 2dph_A           40 VSTNICGSDQHIYRGRFI--VPKGHVLGHEITGEVVEKGSDVELMDIGDLVSVP   91 (398)
T ss_dssp             EEEECCHHHHHHHTTSSC--CCTTCBCCCCEEEEEEEECTTCCSCCTTCEEECC
T ss_pred             EEEeecHHHHHHhcCCCC--CCCCcccCCceEEEEEEECCCCCCCCCCCEEEEc
Confidence            479999999999998643  2578999999999999999999999999999974

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=99.59  E-value=5e-15  Score=87.67  Aligned_cols=53  Identities=38%  Similarity=0.564  Sum_probs=47.5

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      +|++||++|++.+.+.++. ..+|.++|||++|+|+++|++|++|++||+|+..
T Consensus        37 ~a~gi~~~D~~~~~g~~~~-~~~p~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~   89 (348)
T 3two_A           37 LYAGICHSDIHSAYSEWKE-GIYPMIPGHEIAGIIKEVGKGVKKFKIGDVVGVG   89 (348)
T ss_dssp             EEEEECHHHHHHHTTSSSC-CCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEEC
T ss_pred             EEeeecccchhhhcCCCCC-CCCCeecCcceeEEEEEECCCCCCCCCCCEEEEe
Confidence            4799999999999987653 3679999999999999999999999999999864

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=99.58  E-value=1.1e-14  Score=86.63  Aligned_cols=52  Identities=27%  Similarity=0.451  Sum_probs=45.8

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCC-CCCCCCEEEE
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK-HFKVGDKVFG   53 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~-~~~~Gd~V~~   53 (64)
                      ++++||++|++.+.+.++. ..+|.++|||++|+|+++|++|+ +|++||+|+.
T Consensus        41 ~a~gi~~~D~~~~~g~~~~-~~~p~v~GhE~~G~V~~vG~~v~~~~~~GdrV~~   93 (360)
T 1piw_A           41 EACGVCGSDIHCAAGHWGN-MKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGV   93 (360)
T ss_dssp             EEEEECHHHHHHHTTTTSC-CCSSEECCCCEEEEEEEECTTCCSSCCTTCEEEE
T ss_pred             EEeccchhhHHHhcCCCCC-CCCCcccCcCceEEEEEeCCCCCCCCCCCCEEEE
Confidence            4799999999999986543 25789999999999999999999 9999999953

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=99.57  E-value=6.1e-15  Score=87.99  Aligned_cols=58  Identities=34%  Similarity=0.497  Sum_probs=49.0

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCc
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG   60 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G   60 (64)
                      ++++||++|++++.+. +. ..+|.++|||++|+|+++|++|++|++||+|+......||
T Consensus        41 ~a~gi~~~D~~~~~g~-~~-~~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg   98 (376)
T 1e3i_A           41 IATCVCPTDINATDPK-KK-ALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCK   98 (376)
T ss_dssp             EEEECCHHHHHTTCTT-SC-CCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCS
T ss_pred             eEEeEchhhHHHhcCC-CC-CCCCcccCccccEEEEEECCCCccCCCCCEEEECCcCCCC
Confidence            4799999999988875 32 3578999999999999999999999999999987644444

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=99.56  E-value=7.7e-15  Score=88.08  Aligned_cols=52  Identities=25%  Similarity=0.415  Sum_probs=46.0

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      ++++||++|++++.+.++.  .+|.++|||++|+|+++|++|++|++||+|+..
T Consensus        41 ~a~gi~~~D~~~~~g~~~~--~~p~v~GhE~~G~V~~vG~~v~~~~vGDrV~~~   92 (398)
T 1kol_A           41 VSTNICGSDQHMVRGRTTA--QVGLVLGHEITGEVIEKGRDVENLQIGDLVSVP   92 (398)
T ss_dssp             EEEECCHHHHHHHTTCSCC--CTTCBCCCCEEEEEEEECTTCCSCCTTCEEECC
T ss_pred             EEEeechhhHHHHcCCCCC--CCCcccCcccEEEEEEECCCCCcCCCCCEEEEC
Confidence            4799999999999986532  568999999999999999999999999999863

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=99.56  E-value=2.6e-15  Score=88.72  Aligned_cols=55  Identities=35%  Similarity=0.356  Sum_probs=47.1

Q ss_pred             CeeeeCHHHHHHHhCCCCC--CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~--~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      ++++||++|++.+.+.++.  ...+|.++|||++|+|+++|++|++|++||+|++..
T Consensus        33 ~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~   89 (343)
T 2dq4_A           33 EAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQVGDHVSLES   89 (343)
T ss_dssp             EEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCCSSCTTCEEEECC
T ss_pred             EEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCCcCCCCCEEEECC
Confidence            4799999999999885431  125789999999999999999999999999999853

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=99.55  E-value=1.5e-14  Score=85.67  Aligned_cols=55  Identities=35%  Similarity=0.554  Sum_probs=45.7

Q ss_pred             CeeeeCHHHHHHHh-CCCCC-CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRS-GQYPN-LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~-~~~~~-~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +|++||++|++... +.++. ...+|.++|||++|+|+++|++|++|++||+|++..
T Consensus        36 ~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~   92 (352)
T 1e3j_A           36 AYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEP   92 (352)
T ss_dssp             EEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECC
T ss_pred             EEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCCCCCCCCCEEEEcC
Confidence            47999999999887 43221 124689999999999999999999999999999863

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=99.54  E-value=1.3e-14  Score=87.45  Aligned_cols=55  Identities=33%  Similarity=0.565  Sum_probs=46.2

Q ss_pred             CeeeeCHHHHHHHhCCC------CCCCCCCcccCccceEEEEEeCCCC------CCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQY------PNLPDLPAILGTEVSGIVEEVGQGV------KHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~------~~~~~~~~~~G~e~~G~V~~vg~~v------~~~~~Gd~V~~~~   55 (64)
                      +|++||++|++++.+..      +....+|.++|||++|+|+++|++|      ++|++||+|++..
T Consensus        63 ~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~V~~vG~~v~~~~~~~~~~vGdrV~~~~  129 (404)
T 3ip1_A           63 KACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEE  129 (404)
T ss_dssp             EEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEEEEEECTTCEETTTTEECCTTCEEEECS
T ss_pred             eEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEEEEEECCCccccccCCCCCCCCEEEECC
Confidence            47999999999987631      2123578999999999999999999      8899999999853

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=99.53  E-value=9.2e-15  Score=87.33  Aligned_cols=60  Identities=40%  Similarity=0.610  Sum_probs=47.7

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC------CCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL------GKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~------~~G~~ae   64 (64)
                      ++++||++|++++.+. +   .+|.++|||++|+|+++|++|++|++||+|++....      ..|+|+|
T Consensus        44 ~a~gi~~~D~~~~~g~-~---~~p~v~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~~G~~ae  109 (371)
T 3gqv_A           44 EAVAINPSDTSMRGQF-A---TPWAFLGTDYAGTVVAVGSDVTHIQVGDRVYGAQNEMCPRTPDQGAFSQ  109 (371)
T ss_dssp             EEEECCGGGGC------C---CTTSCCCSEEEEEEEEECTTCCSCCTTCEEEEECCTTCTTCTTCCSSBS
T ss_pred             EEEEcCHHHHHHhhcC-C---CCCccCccccEEEEEEeCCCCCCCCCCCEEEEeccCCCCCCCCCCcCcC
Confidence            4799999999888762 2   468999999999999999999999999999988742      3588876

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=99.53  E-value=1.6e-14  Score=85.75  Aligned_cols=51  Identities=20%  Similarity=0.226  Sum_probs=45.0

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCC---CcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDL---PAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~---~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      +|++||++|++++.+.++. ..+   |.++|||++| |+++|++ ++|++||+|++.
T Consensus        33 ~a~gi~~~D~~~~~g~~~~-~~~~~~p~v~G~E~~G-V~~vG~~-~~~~vGdrV~~~   86 (357)
T 2b5w_A           33 LRVGVCGTDHEVIAGGHGG-FPEGEDHLVLGHEAVG-VVVDPND-TELEEGDIVVPT   86 (357)
T ss_dssp             EEEEECHHHHHHHHSCSTT-SCTTCSEEECCSEEEE-EEEECTT-SSCCTTCEEEEC
T ss_pred             eEEeechhcHHHHcCCCCC-CCCCCCCcccCceeEE-EEEECCC-CCCCCCCEEEEC
Confidence            4799999999999986543 245   8999999999 9999999 999999999986

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.53  E-value=2.5e-14  Score=92.32  Aligned_cols=57  Identities=39%  Similarity=0.572  Sum_probs=50.1

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      +|+|||++|+++..|.++    .+.++|||++|+|+++|++|++|++||+|+++..   |+|+|
T Consensus       246 ~a~gin~~D~~~~~G~~~----~~~~lG~E~aG~V~~vG~~V~~~~vGDrV~~~~~---G~~ae  302 (795)
T 3slk_A          246 RAAGVNFRDALIALGMYP----GVASLGSEGAGVVVETGPGVTGLAPGDRVMGMIP---KAFGP  302 (795)
T ss_dssp             EEEEECHHHHHHTTTCCS----SCCCSCCCEEEEEEEECSSCCSSCTTCEEEECCS---SCSSS
T ss_pred             EEEccCHHHHHHHcCCCC----CCccccceeEEEEEEeCCCCCcCCCCCEEEEEec---CCCcC
Confidence            479999999999998654    3567999999999999999999999999999876   77775

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=99.52  E-value=5e-15  Score=88.72  Aligned_cols=61  Identities=26%  Similarity=0.245  Sum_probs=51.1

Q ss_pred             CeeeeCHHHHHHHhCCCCC----------------------------CCCCCcccCccceEEEEEeCCCC-CCCCCCCEE
Q psy3510           1 MAAGINPVETYIRSGQYPN----------------------------LPDLPAILGTEVSGIVEEVGQGV-KHFKVGDKV   51 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~----------------------------~~~~~~~~G~e~~G~V~~vg~~v-~~~~~Gd~V   51 (64)
                      ++++||++|++++.+.++.                            ...+|.++|||++|+|+++|++| ++|++||+|
T Consensus        40 ~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV  119 (379)
T 3iup_A           40 EASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTV  119 (379)
T ss_dssp             EEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHHHHGGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEE
T ss_pred             EEEecCHHHHHHhcCCccccccccccccccccccccCccccccccccccCCCccceeeeEEEEEEeCCCcccCCCCCCEE
Confidence            4799999999999885210                            12468899999999999999999 889999999


Q ss_pred             EEecCCCCcccCC
Q psy3510          52 FGKPILGKGGYSQ   64 (64)
Q Consensus        52 ~~~~~~~~G~~ae   64 (64)
                      ++...   |+|+|
T Consensus       120 ~~~~~---G~~ae  129 (379)
T 3iup_A          120 AAIGG---AMYSQ  129 (379)
T ss_dssp             EECCS---CCSBS
T ss_pred             EecCC---Cccee
Confidence            99865   88876

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=99.51  E-value=4.8e-14  Score=84.45  Aligned_cols=52  Identities=37%  Similarity=0.516  Sum_probs=46.0

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCC------CCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK------HFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~------~~~~Gd~V~~~   54 (64)
                      ++++||++|++++.|.++. ..+|.++|||++|+|+++| +|+      +|++||+|++.
T Consensus        50 ~a~gi~~~D~~~~~G~~~~-~~~P~v~GhE~~G~V~~vG-~V~~~~~~~~~~vGdrV~~~  107 (380)
T 1vj0_A           50 LSAGVCGSDVHMFRGEDPR-VPLPIILGHEGAGRVVEVN-GEKRDLNGELLKPGDLIVWN  107 (380)
T ss_dssp             EEEEECHHHHHHHTTCCTT-CCSSBCCCCEEEEEEEEES-SCCBCTTSCBCCTTCEEEEC
T ss_pred             eEEeecccchHHhcCCCCC-CCCCcccCcCcEEEEEEeC-CccccccCCCCCCCCEEEEc
Confidence            4799999999999986542 2578999999999999999 999      99999999985

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=99.50  E-value=2.7e-14  Score=84.77  Aligned_cols=55  Identities=38%  Similarity=0.527  Sum_probs=45.4

Q ss_pred             CeeeeCHHHHHHHhCC-CCC-CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQ-YPN-LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~-~~~-~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      ++++||++|+++..+. +.. ...+|.++|||++|+|+++|++|++|++||+|++..
T Consensus        39 ~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V~~~~vGdrV~~~~   95 (356)
T 1pl8_A           39 HSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEP   95 (356)
T ss_dssp             EEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCSCCTTCEEEECS
T ss_pred             EEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCCCCCCCCCEEEEec
Confidence            4799999999988742 111 124689999999999999999999999999999863

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=99.49  E-value=9.4e-14  Score=81.58  Aligned_cols=62  Identities=26%  Similarity=0.367  Sum_probs=50.0

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC----CCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI----LGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~----~~~G~~ae   64 (64)
                      +++++|++|++.+.|.++....+|.++|||++|+|+++  ++++|++||+|++...    ...|+|+|
T Consensus        39 ~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~~--~v~~~~vGdrV~~~~~~~g~~~~G~~ae  104 (330)
T 1tt7_A           39 AYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSS--NDPRFAEGDEVIATSYELGVSRDGGLSE  104 (330)
T ss_dssp             CCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEEC--SSTTCCTTCEEEEESTTBTTTBCCSSBS
T ss_pred             EEEecCHHHHhhhcCCCCCcCCCCccccceEEEEEEEc--CCCCCCCCCEEEEcccccCCCCCcccee
Confidence            57999999999998865433357899999999999996  4678999999998642    13588886

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=99.49  E-value=5.3e-14  Score=85.54  Aligned_cols=55  Identities=36%  Similarity=0.630  Sum_probs=42.6

Q ss_pred             CeeeeCHHHHHHHh----------------CCCCCCCCCC-cccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRS----------------GQYPNLPDLP-AILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~----------------~~~~~~~~~~-~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +|++||++|++...                +.++....+| .++|||++|+|+++|++|++|++||+|++..
T Consensus        70 ~a~gic~sD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~  141 (447)
T 4a0s_A           70 MASSINYNTVWSAMFEPIPTFHFLKQNARQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHP  141 (447)
T ss_dssp             EEEECCHHHHHHHTTCSSCHHHHHHHHHTTCGGGGGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECS
T ss_pred             EEEEECcHHhhhhccCcccchhhhhhhcccCccccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEec
Confidence            47999999985432                1111111356 6999999999999999999999999999865

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=99.47  E-value=1.2e-13  Score=81.11  Aligned_cols=62  Identities=21%  Similarity=0.319  Sum_probs=49.5

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC----CCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI----LGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~----~~~G~~ae   64 (64)
                      ++++||++|++.+.|.++....+|.++|||++|+|+++  ++++|++||+|++...    ...|+|+|
T Consensus        38 ~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~--~v~~~~vGdrV~~~~~~~g~~~~G~~ae  103 (328)
T 1xa0_A           38 HYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSS--QHPRFREGDEVIATGYEIGVTHFGGYSE  103 (328)
T ss_dssp             EEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEEC--CSSSCCTTCEEEEESTTBTTTBCCSSBS
T ss_pred             EEEecCHHHHHhhcCCCCCCCCCCcccCcceEEEEEec--CCCCCCCCCEEEEccccCCCCCCcccee
Confidence            47999999999988865433357899999999999995  5688999999998642    13588886

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=99.42  E-value=2e-13  Score=83.39  Aligned_cols=55  Identities=27%  Similarity=0.472  Sum_probs=43.0

Q ss_pred             CeeeeCHHHHHHHhCCC----------------CCCCCCC-cccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQY----------------PNLPDLP-AILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~----------------~~~~~~~-~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      ++++||++|++...+..                .....+| .++|||++|+|+++|++|++|++||+|++..
T Consensus        78 ~a~gic~sD~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~  149 (456)
T 3krt_A           78 MASSVNYNSVHTSIFEPLSTFGFLERYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHC  149 (456)
T ss_dssp             EEEEECHHHHHHHTTCSSCSHHHHHHHHTSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECC
T ss_pred             EEEEecchhhhhhhcCcccchhhhhhccccccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeC
Confidence            47999999987653211                0011356 6999999999999999999999999999854

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=99.32  E-value=1.9e-12  Score=76.75  Aligned_cols=58  Identities=17%  Similarity=0.168  Sum_probs=45.8

Q ss_pred             CeeeeCHHHHHHHhC----CCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccCC
Q psy3510           1 MAAGINPVETYIRSG----QYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~----~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      ++++||++|++.+.+    .++....+|.++|||++|+|++  +++++|++||+|++..    |+|+|
T Consensus        50 ~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~--~~v~~~~vGdrV~~~~----G~~ae  111 (357)
T 2zb4_A           50 LYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGIIEE--SKHTNLTKGDFVTSFY----WPWQT  111 (357)
T ss_dssp             EEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEEEEEEEEEE--ECSTTCCTTCEEEEEE----EESBS
T ss_pred             EEEecCHHHHhhccccccccccCCCCCCccccccEEEEEEe--cCCCCCCCCCEEEecC----CCcEE
Confidence            479999999987765    2321225688999999999999  8899999999999863    56665

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=99.31  E-value=2e-12  Score=77.05  Aligned_cols=51  Identities=29%  Similarity=0.354  Sum_probs=40.1

Q ss_pred             CeeeeCHHHHHHHhC--CCCCCCCC---CcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSG--QYPNLPDL---PAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~--~~~~~~~~---~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +|++||++|++++.|  .++. ..+   |.++|||++|+|++  ++ ++|++||+|++..
T Consensus        34 ~a~gi~~~D~~~~~g~~~~~~-~~~~~~p~v~G~E~~G~V~~--~~-~~~~~GDrV~~~~   89 (366)
T 2cdc_A           34 IYNGICGADREIVNGKLTLST-LPKGKDFLVLGHEAIGVVEE--SY-HGFSQGDLVMPVN   89 (366)
T ss_dssp             EEEEECHHHHHHHTTCC--------CCSCEECCSEEEEEECS--CC-SSCCTTCEEEECS
T ss_pred             EEEeeccccHHHHcCCCCCCC-CCcCCCCCcCCcceEEEEEe--CC-CCCCCCCEEEEcC
Confidence            479999999999998  5442 245   89999999999999  67 8899999999753

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=99.22  E-value=1.4e-11  Score=71.68  Aligned_cols=51  Identities=33%  Similarity=0.500  Sum_probs=43.0

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      +++++|++|++.+.|.++....+|.++|||++|+|+           ||+|++...  .|+|+|
T Consensus        33 ~a~gi~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~-----------GdrV~~~~~--~G~~ae   83 (302)
T 1iz0_A           33 EAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVE-----------GRRYAALVP--QGGLAE   83 (302)
T ss_dssp             EEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEET-----------TEEEEEECS--SCCSBS
T ss_pred             EEEecCHHHHHHhCCCCCCCCCCCCcccceEEEEEE-----------CcEEEEecC--Ccceee
Confidence            479999999999998765433578999999999997           999999875  688886

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=99.15  E-value=1.1e-10  Score=68.59  Aligned_cols=55  Identities=20%  Similarity=0.122  Sum_probs=41.8

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCcc----ceEEEEEeCCCCCCCCCCCEEEEecCCCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTE----VSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e----~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      ++++||++|+..+.+....  .+|.++|||    ++|+|++.  ++++|++||+|++.     |+|+|
T Consensus        46 ~a~gi~~~d~~~~~~~~~~--~~p~~~G~e~g~~~~G~V~~~--~v~~~~vGdrV~~~-----G~~ae  104 (336)
T 4b7c_A           46 EYLSLDPAMRGWMNDARSY--IPPVGIGEVMRALGVGKVLVS--KHPGFQAGDYVNGA-----LGVQD  104 (336)
T ss_dssp             EEEECCTHHHHHHSCSCCS--SCCCCTTSBCCCEEEEEEEEE--CSTTCCTTCEEEEE-----CCSBS
T ss_pred             EEEEeCHHHHhhhhccccc--CCCCCCCcccCCceEEEEEec--CCCCCCCCCEEecc-----CCceE
Confidence            4799999999888764322  346666776    79999994  58899999999975     55554

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=98.97  E-value=1.4e-09  Score=64.15  Aligned_cols=53  Identities=21%  Similarity=0.302  Sum_probs=39.9

Q ss_pred             CeeeeCHHHHHHHhCCCCCC---CCCCcccCccceEEEEE--eCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNL---PDLPAILGTEVSGIVEE--VGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~---~~~~~~~G~e~~G~V~~--vg~~v~~~~~Gd~V~~~   54 (64)
                      +++++|+.|. ...+.+...   ..+|.++|||++|++.+  +++++++|++||+|++.
T Consensus        46 ~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~G~~~~GvV~~~v~~~~vGdrV~~~  103 (345)
T 2j3h_A           46 LYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQGYGVSRIIESGHPDYKKGDLLWGI  103 (345)
T ss_dssp             CEEECCTTHH-HHHBC---------CCCCTTSBCEEEEEEEEEEECSTTCCTTCEEEEE
T ss_pred             EEecCCHHHH-hhcccCCCCccccCCCcCCCCeeecceEEEEEecCCCCCCCCCEEEee
Confidence            4788999885 444543211   13588999999999999  99999999999999875

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=98.79  E-value=7e-09  Score=60.92  Aligned_cols=47  Identities=17%  Similarity=0.157  Sum_probs=36.8

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      ++++||+.|... ..  +  ..+|.++|||++|+|++.  ++++|++||+|++.
T Consensus        46 ~a~gi~~~~~~~-~~--~--~~~p~~~g~e~~G~Vv~~--~v~~~~vGdrV~~~   92 (333)
T 1v3u_A           46 LFLSVDPYMRIA-SK--R--LKEGAVMMGQQVARVVES--KNSAFPAGSIVLAQ   92 (333)
T ss_dssp             EEEECCTHHHHH-TT--T--CCTTSBCCCCEEEEEEEE--SCTTSCTTCEEEEC
T ss_pred             EEeccCHHHccc-cC--c--CCCCcccccceEEEEEec--CCCCCCCCCEEEec
Confidence            478999998732 11  1  246788999999999995  57889999999875

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.94  E-value=8.2e-06  Score=58.19  Aligned_cols=52  Identities=21%  Similarity=0.287  Sum_probs=40.3

Q ss_pred             CeeeeCHHHHHHHhCCCCCC------CCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNL------PDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~------~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      +|+++|+.|+++..|.++..      ...+.++|+|++|+|.          +||+|+++..  .|+|+|
T Consensus      1567 ~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V~----------vGdrV~g~~~--~G~~Ae 1624 (2512)
T 2vz8_A         1567 YYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRDA----------SGRRVMGMVP--AEGLAT 1624 (2512)
T ss_dssp             EEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEET----------TSCCEEEECS--SCCSBS
T ss_pred             EecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEEc----------cCCEEEEeec--CCceee
Confidence            47899999999999875421      1235689999999872          7999999875  577775

>1g31_A GP31; chaperone, CO-chaperonin, groes, in VIVO protein folding, bacteriophage T4; 2.30A {Enterobacteria phage T4} SCOP: b.35.1.1 PDB: 2cgt_O

Probab=94.06  E-value=0.091  Score=26.95  Aligned_cols=24  Identities=29%  Similarity=0.264  Sum_probs=19.9

Q ss_pred             ceEEEEEeCCCCC--CCCCCCEEEEe
Q psy3510          31 VSGIVEEVGQGVK--HFKVGDKVFGK   54 (64)
Q Consensus        31 ~~G~V~~vg~~v~--~~~~Gd~V~~~   54 (64)
                      .-|+|+++|+++.  .+++||+|+.-
T Consensus        47 ~~g~VvAVG~g~~~~~vKvGD~Vl~~   72 (111)
T 1g31_A           47 ELCVVHSVGPDVPEGFCEVGDLTSLP   72 (111)
T ss_dssp             EEEEEEEECTTSCTTSCCTTCEEEEE
T ss_pred             ceEEEEEECCCCccccccCCCEEEEC
Confidence            4799999999865  38999999864

>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0

Probab=93.80  E-value=0.062  Score=26.81  Aligned_cols=26  Identities=38%  Similarity=0.474  Sum_probs=20.3

Q ss_pred             ceEEEEEeCCCCC---------CCCCCCEEEEecC
Q psy3510          31 VSGIVEEVGQGVK---------HFKVGDKVFGKPI   56 (64)
Q Consensus        31 ~~G~V~~vg~~v~---------~~~~Gd~V~~~~~   56 (64)
                      ..|+|+++|++..         ..++||+|+.--.
T Consensus        36 ~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vl~~ky   70 (95)
T 3nx6_A           36 TKGEVVAIGAGKPLDNGSLHAPVVKVGDKVIYGQY   70 (95)
T ss_dssp             EEEEEEEECSCEECTTSCEECCSCCTTCEEEECTT
T ss_pred             cccEEEEECCCeECCCCCEEccccCCCCEEEECCc
Confidence            5799999998642         4899999976543

>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O

Probab=91.10  E-value=0.23  Score=24.85  Aligned_cols=25  Identities=40%  Similarity=0.442  Sum_probs=19.6

Q ss_pred             ceEEEEEeCCCC---------CCCCCCCEEEEec
Q psy3510          31 VSGIVEEVGQGV---------KHFKVGDKVFGKP   55 (64)
Q Consensus        31 ~~G~V~~vg~~v---------~~~~~Gd~V~~~~   55 (64)
                      ..|+|+++|++.         -..++||+|+.--
T Consensus        36 ~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vlf~k   69 (97)
T 1pcq_O           36 TRGEVLAVGNGRILENGEVKPLDVKVGDIVIFND   69 (97)
T ss_dssp             CEEEEEEECSEECTTSSSCEECSCCTTCEEEECC
T ss_pred             cccEEEEEcCceecCCCCEEecccCCCCEEEECC
Confidence            569999999863         1379999998765

>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A

Probab=90.58  E-value=0.11  Score=26.11  Aligned_cols=26  Identities=35%  Similarity=0.313  Sum_probs=20.2

Q ss_pred             ceEEEEEeCCCCC---------CCCCCCEEEEecC
Q psy3510          31 VSGIVEEVGQGVK---------HFKVGDKVFGKPI   56 (64)
Q Consensus        31 ~~G~V~~vg~~v~---------~~~~Gd~V~~~~~   56 (64)
                      ..|+|+++|++..         ..++||+|+.--.
T Consensus        41 ~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vlf~ky   75 (100)
T 1we3_O           41 QKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKY   75 (100)
T ss_dssp             SEEEESCCCCCEECTTSCEECCSCCTTCEEEECTT
T ss_pred             cCCEEEEECCCcCCCCCCEEeeecCCCCEEEECCC
Confidence            5799999998741         3899999986543

>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A

Probab=90.50  E-value=0.28  Score=24.59  Aligned_cols=26  Identities=31%  Similarity=0.334  Sum_probs=20.1

Q ss_pred             ceEEEEEeCCCCC----------CCCCCCEEEEecC
Q psy3510          31 VSGIVEEVGQGVK----------HFKVGDKVFGKPI   56 (64)
Q Consensus        31 ~~G~V~~vg~~v~----------~~~~Gd~V~~~~~   56 (64)
                      ..|+|+++|++..          ..++||+|+.--.
T Consensus        38 ~~G~VvAVG~G~~~~~G~~~~p~~VkvGD~Vlf~ky   73 (99)
T 1p3h_A           38 QEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKY   73 (99)
T ss_dssp             EEEEEEEECCCEECSSSSCEECCSCCTTCEEEEECT
T ss_pred             ceEEEEEECCCcCcCCCCEEEccccCCCCEEEECCc
Confidence            5799999998631          3889999987543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	64
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	2e-04
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	5e-04

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 34.9 bits (79), Expect = 2e-04
 Identities = 21/60 (35%), Positives = 28/60 (46%)

Query: 2  AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
          A+G+   + +   G +P  P LP I G E  G V  VG GV   K GD+V    +    G
Sbjct: 39 ASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACG 98

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 33.4 bits (75), Expect = 5e-04
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 2  AAGINPVETYIRSG--QYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGK 59
            GI   + +          +   P ++G E SG V +VG+ VKH K GD+V  +P +  
Sbjct: 34 YVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPC 93

Query: 60 GGY 62
             
Sbjct: 94 RRC 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	64
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.79
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.77
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.7
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.69
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.68
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	99.68
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.67
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.67
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.66
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	99.65
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.65
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.64
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.62
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.61
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.61
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.59
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	99.59
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.58
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	99.58
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.53
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.5
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.49
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.4
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.34
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	98.41
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	97.63
d1p3ha_	99	Chaperonin-10 (GroES) {Mycobacterium tuberculosis	92.62
d1aono_	97	Chaperonin-10 (GroES) {Escherichia coli [TaxId: 56	91.57
d1g31a_	107	GP31 co-chaperonin {Bacteriophage T4 [TaxId: 10665	89.47
d1we3o_	96	Chaperonin-10 (GroES) {Thermus thermophilus [TaxId	83.44

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.7e-19  Score=94.70  Aligned_cols=63  Identities=49%  Similarity=0.886  Sum_probs=56.0

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      +++++|++|++.+.+.++....+|.++|+|++|+|+++|+++++|++||+|++... ..|+|||
T Consensus        38 ~a~~i~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~-~~G~~ae  100 (150)
T d1yb5a1          38 HACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSST-ISGGYAE  100 (150)
T ss_dssp             EEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCTTCCTTCEEEESCC-SSCSSBS
T ss_pred             EEecCcccchhhhcCCcCccccccccCccceeeeeEeecceeeccccCcccccccc-ccccccc
Confidence            47999999999999987665578899999999999999999999999999998765 4688886

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.3e-18  Score=92.13  Aligned_cols=62  Identities=56%  Similarity=0.899  Sum_probs=53.8

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      +|++||++|+++++|.++. ..+|.++|+|++|+|+++|+++++|++||+|+.... ..|+|+|
T Consensus        35 ~a~~in~~D~~~~~G~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~-~~G~~ae   96 (147)
T d1qora1          35 KAIGINFIDTYIRSGLYPP-PSLPSGLGTEAAGIVSKVGSGVKHIKAGDRVVYAQS-ALGAYSS   96 (147)
T ss_dssp             EEEECCHHHHHHHHTSSCC-SSSSBCCCSCEEEEEEEECTTCCSCCTTCEEEESCC-SSCCSBS
T ss_pred             EEecccceeeeeecCCCCC-Ccceeeeccccccceeeeeeecccccccceeeeecc-cccccee
Confidence            4799999999999998753 368899999999999999999999999999976544 4788886

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.70  E-value=2.1e-17  Score=91.43  Aligned_cols=53  Identities=25%  Similarity=0.384  Sum_probs=47.5

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      ++++||++|++.+++.++.  .+|.++|||++|+|+++|++|++|++||+|....
T Consensus        40 ~a~giC~sDl~~~~G~~~~--~~P~v~GHE~~G~Vv~vG~~V~~~~vGdrV~v~~   92 (201)
T d1kola1          40 VSTNICGSDQHMVRGRTTA--QVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPF   92 (201)
T ss_dssp             EEEECCHHHHHHHTTCSCC--CTTCBCCCCEEEEEEEECTTCCSCCTTCEEECCS
T ss_pred             EEEEEcchhhhhhcCCccc--ccceeccceeeeeeeccccccccccccceeEEee
Confidence            4789999999999987653  6899999999999999999999999999997543

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.69  E-value=5.8e-17  Score=89.13  Aligned_cols=54  Identities=39%  Similarity=0.644  Sum_probs=48.2

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI   56 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~   56 (64)
                      +++++|++|++...+.++.  ++|.++|||++|+|+++|+++++|++||+|+....
T Consensus        36 ~a~gic~sD~~~~~G~~~~--~~P~i~GHE~~G~V~~vG~~v~~~~vGDrVv~~~~   89 (194)
T d1f8fa1          36 VATGMCHTDLIVRDQKYPV--PLPAVLGHEGSGIIEAIGPNVTELQVGDHVVLSYG   89 (194)
T ss_dssp             EEEECCHHHHHHHTTSSCC--CSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECCC
T ss_pred             EEEEecCchHhhhhhcccc--cCCcccccceEEEeeecCccceeEccCceeeeecc
Confidence            4799999999999997653  68999999999999999999999999999966543

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.68  E-value=1e-16  Score=88.37  Aligned_cols=58  Identities=36%  Similarity=0.574  Sum_probs=51.1

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCc
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG   60 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G   60 (64)
                      .|+++|.+|++++++.++.  .+|.++|||++|+|+++|++++++++||+|+......||
T Consensus        41 ~a~gICgsDlh~~~G~~~~--~~P~i~GHE~~G~Vv~~G~~v~~~~~GdrV~~~~~~~Cg   98 (198)
T d1p0fa1          41 LASGICGSDSSVLKEIIPS--KFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCG   98 (198)
T ss_dssp             EEEECCHHHHHHHTTSSCC--CSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCS
T ss_pred             EEEEEecccceeeeecccc--ccccccceeeeeeeeecCcccccCcCCCEEEEEeecccc
Confidence            3799999999999997764  689999999999999999999999999999987754444

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.68  E-value=8e-17  Score=87.61  Aligned_cols=55  Identities=31%  Similarity=0.280  Sum_probs=45.6

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI   56 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~   56 (64)
                      ++++||++|++.+.+..+. ..+|+++|||++|+|+++|+++++|++||+|.....
T Consensus        32 ~a~gic~sD~~~~~~~~~~-~~~P~i~GhE~~G~V~~vG~~v~~~~vGdrV~v~~~   86 (177)
T d1jqba1          32 LAVSPCTSDIHTVFEGALG-DRKNMILGHEAVGEVVEVGSEVKDFKPGDRVIVPCT   86 (177)
T ss_dssp             EEECCCHHHHHHHHHCTTC-CCSSEECCCCEEEEEEEECTTCCSCCTTCEEEECSC
T ss_pred             EEEecCCCcccccccCCCC-CCCCccCcceeeEEeeecccccceecCCCcEEEeee
Confidence            4789999999776543322 267999999999999999999999999999986543

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.67  E-value=1.9e-16  Score=87.05  Aligned_cols=55  Identities=38%  Similarity=0.570  Sum_probs=49.6

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL   57 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~   57 (64)
                      +++|||.+|++.++|.++.  .+|.++|||++|+|+++|++++++++||+|+.....
T Consensus        41 ~a~giC~sDl~~~~G~~~~--~~P~i~GHE~~G~Vv~vG~~v~~~~vGdrV~v~~~~   95 (198)
T d2jhfa1          41 VATGICRSDDHVVSGTLVT--PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTP   95 (198)
T ss_dssp             EEEECCHHHHHHHHTSSCC--CSSBCCCCSEEEEEEEECTTCCSCCTTCEEEECSSC
T ss_pred             EEEecccccceeecCCccc--ccceecccceeEEEEecCccccCcCCCCEEEEeeee
Confidence            4799999999999997664  689999999999999999999999999999887654

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.67  E-value=1.4e-16  Score=86.08  Aligned_cols=55  Identities=36%  Similarity=0.476  Sum_probs=49.4

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +++++|++|++.++|.++....+|.++|||++|+|+++|++++++++||+|+...
T Consensus        38 ~a~gic~~D~~~~~G~~~~~~~~P~i~GhE~~G~V~~~G~~v~~~~~GdrV~~~~   92 (175)
T d1llua1          38 EASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVTRVKEGDRVGIPW   92 (175)
T ss_dssp             EEEECCHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTTCEEEECS
T ss_pred             EEecCcccchhhhccCccccccCCcCCCCcceEEEEEeCCCccccccCCEEEecc
Confidence            4799999999999998765557899999999999999999999999999998643

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.66  E-value=1.4e-16  Score=87.69  Aligned_cols=57  Identities=35%  Similarity=0.492  Sum_probs=50.0

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGK   59 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~   59 (64)
                      +++|||++|++.+.|.++.  .+|.++|||++|+|+++|++|+++++||+|+......+
T Consensus        41 ~a~gic~sD~~~~~G~~~~--~~P~v~GHE~~G~V~~vG~~V~~~~~GdrV~~~~~~~c   97 (202)
T d1e3ia1          41 IATCVCPTDINATDPKKKA--LFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQC   97 (202)
T ss_dssp             EEEECCHHHHHTTCTTSCC--CSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCC
T ss_pred             EEEEEeccccceeeeeccc--ccccccccccceEEeeecCCceeccCCCEEEEEeeccc
Confidence            4799999999999987653  57999999999999999999999999999988765433

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.65  E-value=3.4e-16  Score=84.10  Aligned_cols=54  Identities=46%  Similarity=0.676  Sum_probs=47.6

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      ++++||++|++++.+.+.....+|.++|||++|+|+++|++++++++||+|...
T Consensus        33 ~a~gic~sD~~~~~~~~~~~~~~p~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~   86 (171)
T d1rjwa1          33 KACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIP   86 (171)
T ss_dssp             EEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTTCEEEEC
T ss_pred             EEeeccccceeeeecccccccccccccCCEEEEEEEEecccccCceeeeEEeec
Confidence            479999999999887655455789999999999999999999999999999754

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=2.8e-16  Score=85.52  Aligned_cols=53  Identities=23%  Similarity=0.317  Sum_probs=47.1

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~   54 (64)
                      ++++||++|++.+.+.++. ..+|+++|||++|+|+++|++|+++++||+|...
T Consensus        33 ~a~gic~sDl~~~~g~~~~-~~~P~i~GhE~~G~V~~vG~~V~~~~vGdrV~v~   85 (179)
T d1uufa1          33 AYCGVCHSDLHQVRSEWAG-TVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVG   85 (179)
T ss_dssp             EEEECCHHHHHHHHCTTSC-CCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEEC
T ss_pred             EEECCCCCcceeeeeeecc-ccccccccccccccchhhccccccCCCCCEEEEc
Confidence            4799999999999997653 3689999999999999999999999999999643

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.64  E-value=1.9e-16  Score=85.64  Aligned_cols=55  Identities=38%  Similarity=0.604  Sum_probs=47.6

Q ss_pred             CeeeeCHHHHHHHhCCCCC-------CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPN-------LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~-------~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      ++++||++|+++++|.++.       ...+|+++|||++|+|+++|+++++|++||+|+...
T Consensus        33 ~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~g~~v~~~~~GdrV~~~~   94 (177)
T d1jvba1          33 EAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNP   94 (177)
T ss_dssp             EEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECC
T ss_pred             EEEecccceeeeecCcccccccccccccCCCccccceEEEEEeeeccCccccccCceEeeee
Confidence            4799999999999986431       225799999999999999999999999999998765

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.62  E-value=6e-16  Score=83.48  Aligned_cols=56  Identities=34%  Similarity=0.571  Sum_probs=48.3

Q ss_pred             CeeeeCHHHHHHHhCCCCC--CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510           1 MAAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI   56 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~--~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~   56 (64)
                      +|++||++|++.+.|.++.  ...+|.++|||++|+|+++|++++++++||+|+....
T Consensus        33 ~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~   90 (171)
T d1h2ba1          33 AGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPA   90 (171)
T ss_dssp             EEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCSCCTTCEEEECSC
T ss_pred             EecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCCcCCCCCEEEEcCc
Confidence            4799999999999986542  2257899999999999999999999999999997654

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.61  E-value=6.5e-16  Score=83.59  Aligned_cols=55  Identities=33%  Similarity=0.451  Sum_probs=46.3

Q ss_pred             CeeeeCHHHHHHHhCCCCC--CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~--~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      ++++||++|++.+++....  ....|.++|||++|+|+++|+++++|++||+|+...
T Consensus        33 ~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~~~~GdrV~~~~   89 (178)
T d1e3ja1          33 AYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEP   89 (178)
T ss_dssp             EEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECC
T ss_pred             EEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCCCCCCCEEEECc
Confidence            4799999999988864321  225689999999999999999999999999998754

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.61  E-value=1.7e-15  Score=83.29  Aligned_cols=59  Identities=39%  Similarity=0.577  Sum_probs=50.9

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCc
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG   60 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G   60 (64)
                      +++|||++|+++++|.++. ..+|.++|||++|+|+++|++|+.+++||+|+......+|
T Consensus        39 ~a~gic~sD~~~~~G~~~~-~~~p~v~GhE~~G~V~~vG~~V~~~~~GdrV~v~~~~~cg   97 (197)
T d2fzwa1          39 IATAVCHTDAYTLSGADPE-GCFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCG   97 (197)
T ss_dssp             EEEECCHHHHHHHHTCCTT-CCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCS
T ss_pred             EEecCCCCcHHHHcCCccc-ccccccCCcceeeEEEeecCCceecCCCCEEEEccccccc
Confidence            4899999999999997653 3689999999999999999999999999999887654333

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=2.2e-15  Score=82.68  Aligned_cols=53  Identities=26%  Similarity=0.431  Sum_probs=45.9

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCC-CCCCCCCEEEEe
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGV-KHFKVGDKVFGK   54 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v-~~~~~Gd~V~~~   54 (64)
                      +|+|||++|++++.+.++. ..+|+++|||++|+|+++|+++ +.+++||+|...
T Consensus        41 ~a~giC~sDl~~~~g~~~~-~~~P~i~GHE~~G~Vv~vG~~v~~~~k~GdrV~~~   94 (192)
T d1piwa1          41 EACGVCGSDIHCAAGHWGN-MKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVG   94 (192)
T ss_dssp             EEEEECHHHHHHHTTTTSC-CCSSEECCCCEEEEEEEECTTCCSSCCTTCEEEEC
T ss_pred             eeeCCCcchHHHHcCCCCC-CCCCcCcccccccchhhcccccccccCCCCeeeEe
Confidence            4799999999999987653 3689999999999999999987 569999999644

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=2.1e-15  Score=82.35  Aligned_cols=54  Identities=31%  Similarity=0.460  Sum_probs=46.7

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCC-----CCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK-----HFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~-----~~~~Gd~V~~~~   55 (64)
                      +++|||++|+++++|.++.. .+|+++|||++|+|+++|++|+     ++++||+|+...
T Consensus        37 ~a~gIC~sD~~~~~G~~~~~-~~P~vlGHE~~G~V~~vG~~v~~~~~~~~~~Gd~V~~~~   95 (184)
T d1vj0a1          37 LSAGVCGSDVHMFRGEDPRV-PLPIILGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNR   95 (184)
T ss_dssp             EEEEECHHHHHHHTTCCTTC-CSSBCCCCEEEEEEEEESSCCBCTTSCBCCTTCEEEECS
T ss_pred             EEECCCCCchhheeccCCcc-ccccccceeeeeeeeEEeccccccccccccceeeeEecc
Confidence            47999999999999976543 6899999999999999999885     468999998754

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.58  E-value=5.6e-15  Score=81.19  Aligned_cols=59  Identities=36%  Similarity=0.526  Sum_probs=50.7

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCc
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG   60 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G   60 (64)
                      +|+++|++|++.+.+.... ..+|.++|||++|+|+++|+++++|++||+|+......+|
T Consensus        41 ~a~giCgsD~~~~~g~~~~-~~~p~i~GhE~~G~v~~vG~~v~~~~~GdrV~~~~~~~cg   99 (199)
T d1cdoa1          41 IATGVCHTDLYHLFEGKHK-DGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCG   99 (199)
T ss_dssp             EEEECCHHHHHHHHTTCCT-TSCSEECCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCS
T ss_pred             EEEEEecchhhhhhhcccc-cccccccccccceEEEEEcCCCceecCCCEEEEeeecccc
Confidence            4799999999999986442 3679999999999999999999999999999888765444

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.1e-15  Score=83.28  Aligned_cols=55  Identities=36%  Similarity=0.472  Sum_probs=46.0

Q ss_pred             CeeeeCHHHHHHHhCCCC--CCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           1 MAAGINPVETYIRSGQYP--NLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~--~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      ++++||++|++.+++...  ....+|.++|||++|+|+++|+++++|++||+|+...
T Consensus        39 ~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~   95 (185)
T d1pl8a1          39 HSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEP   95 (185)
T ss_dssp             EEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCSCCTTCEEEECS
T ss_pred             EEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEeccceeeecccccceecc
Confidence            479999999999875321  1225789999999999999999999999999998754

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=2.4e-14  Score=75.67  Aligned_cols=62  Identities=19%  Similarity=0.297  Sum_probs=53.0

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC----CCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL----GKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~----~~G~~ae   64 (64)
                      +|++||+.|++.+.|.++....+|.++|+|++|+|++++.  ..+++||+|+.....    ..|+|||
T Consensus        35 ~a~gin~~D~~~~~G~~~~~~~~p~v~G~e~~G~V~~~~~--~~~~~g~~v~~~~~~~g~~~~G~~Ae  100 (146)
T d1o89a1          35 HWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSED--PRFHAGQEVLLTGWGVGENHWGGLAE  100 (146)
T ss_dssp             EEEECCHHHHHHHHTCSSCCCSSSBCCCSEEEEEEEEECS--TTCCTTCEEEEECTTBTTTBCCSSBS
T ss_pred             eeccCccceeeEEEeecccccccceeccccccccceeecc--CCccceeeEEeecccceecCCCccee
Confidence            4899999999999998776667899999999999999876  479999999986643    5799987

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.50  E-value=2.7e-14  Score=75.61  Aligned_cols=62  Identities=21%  Similarity=0.317  Sum_probs=52.4

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC----CCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL----GKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~----~~G~~ae   64 (64)
                      +|++||++|++.+.+.++.....|.++|+|++|+|++  ..++.|++||+|+.....    +.|+|||
T Consensus        38 ~a~gin~~D~~~~~g~~~~~~~~p~v~g~e~~G~v~~--~~~~~~~~g~~v~~~~~~~~~~~~G~~aE  103 (152)
T d1xa0a1          38 HYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVS--SQHPRFREGDEVIATGYEIGVTHFGGYSE  103 (152)
T ss_dssp             EEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEE--CCSSSCCTTCEEEEESTTBTTTBCCSSBS
T ss_pred             EEeCCChHHHHHHhhcccccccccceeeeeeeeeeec--cCCCccccCCEEEEecCccccccCCCcce
Confidence            4899999999999887765557899999999999998  556789999999988653    5689987

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.49  E-value=3e-14  Score=74.15  Aligned_cols=51  Identities=31%  Similarity=0.464  Sum_probs=44.9

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      +|++||++|++.++|.++....+|+++|+|++|+|           +||+|+++..  .|+|+|
T Consensus        33 ~a~gin~~D~~~~~G~~~~~~~~P~v~G~E~~G~V-----------vGd~V~~~~~--~G~~ae   83 (131)
T d1iz0a1          33 EAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV-----------EGRRYAALVP--QGGLAE   83 (131)
T ss_dssp             EEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEE-----------TTEEEEEECS--SCCSBS
T ss_pred             EEEeccccccccccccccccccceeEeeeeeEEee-----------ccceEEEEec--cCccce
Confidence            48999999999999987665578999999999999           3999999887  789986

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.40  E-value=8.1e-13  Score=70.45  Aligned_cols=62  Identities=26%  Similarity=0.370  Sum_probs=52.4

Q ss_pred             CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC----CCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL----GKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~----~~G~~ae   64 (64)
                      +|++||++|++.+.+.++.....|.++|+|++|+|++  +.+.++++||+|+.....    ..|+|||
T Consensus        38 ~a~gin~~D~~~~~g~~~~~~~~~~~~g~e~~G~v~~--~~~~~~~~g~~v~~~~~~~g~~~~G~~ae  103 (162)
T d1tt7a1          38 AYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVS--SNDPRFAEGDEVIATSYELGVSRDGGLSE  103 (162)
T ss_dssp             CCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEE--CSSTTCCTTCEEEEESTTBTTTBCCSSBS
T ss_pred             EEecccchhhheeeecccccccceeeeeeeccccccc--ccccccccceeeEeeeccceeccccccce
Confidence            5899999999999998776556789999999999998  456789999999987653    5688886

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.34  E-value=4e-12  Score=67.81  Aligned_cols=63  Identities=27%  Similarity=0.395  Sum_probs=52.7

Q ss_pred             CeeeeCHHHHHHHhCCCCCCC---------CCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccCC
Q psy3510           1 MAAGINPVETYIRSGQYPNLP---------DLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ   64 (64)
Q Consensus         1 ~a~~l~~~D~~~~~~~~~~~~---------~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ae   64 (64)
                      +|++||++|+++++|.++...         ..|.++|+|++|+|++.+.+++.++.||+|..... ..|+|+|
T Consensus        41 ~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~~g~V~~~~~~~~~~~~g~~v~~~~~-~~g~~ae  112 (175)
T d1gu7a1          41 LGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHV-NFGTWRT  112 (175)
T ss_dssp             EEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCEEEEEEECTTCCSCCTTCEEEESSS-CCCCSBS
T ss_pred             EEeccCcceeEEEecCcccccccccccCCCCCCcccccccccccccccccccccccccceecccc-ccccccc
Confidence            489999999999998754321         45788999999999999999999999999987665 4678876

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.63  E-value=0.0001  Score=38.19  Aligned_cols=47  Identities=15%  Similarity=0.134  Sum_probs=31.3

Q ss_pred             eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510           2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP   55 (64)
Q Consensus         2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~   55 (64)
                      +.++++........   .  ....++..+.+|+|++  ++.++|++||+|++..
T Consensus        43 ~~svDp~~R~~~~~---~--~~g~~~~g~~vg~Vv~--S~~~~f~~GD~V~g~~   89 (147)
T d1v3va1          43 FLSVDPYMRIASKR---L--KEGAVMMGQQVARVVE--SKNSAFPAGSIVLAQS   89 (147)
T ss_dssp             EEECCTHHHHHGGG---S--CTTSBCCCCEEEEEEE--ESCTTSCTTCEEEECC
T ss_pred             EEeEcccccccccc---c--ccCCccccceEEEEEE--eCCCcccCCCEEEEcc
Confidence            56777764332221   1  2344566688999988  5567899999998763

>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.62  E-value=0.057  Score=25.67  Aligned_cols=27  Identities=30%  Similarity=0.315  Sum_probs=20.7

Q ss_pred             cceEEEEEeCCCCC----------CCCCCCEEEEecC
Q psy3510          30 EVSGIVEEVGQGVK----------HFKVGDKVFGKPI   56 (64)
Q Consensus        30 e~~G~V~~vg~~v~----------~~~~Gd~V~~~~~   56 (64)
                      ...|+|+++|+...          .+++||+|+....
T Consensus        37 ~~~G~VvavG~g~~~~~~~~~~~~~vk~GD~Vl~~~~   73 (99)
T d1p3ha_          37 PQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKY   73 (99)
T ss_dssp             EEEEEEEEECCCEECSSSSCEECCSCCTTCEEEEECT
T ss_pred             ceEEEEEEECCceEcCCCCEecCCeeecCCEEEEccc
Confidence            35799999998642          3789999987654

>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Escherichia coli [TaxId: 562]

Probab=91.57  E-value=0.14  Score=24.07  Aligned_cols=26  Identities=38%  Similarity=0.428  Sum_probs=20.1

Q ss_pred             cceEEEEEeCCCCC---------CCCCCCEEEEec
Q psy3510          30 EVSGIVEEVGQGVK---------HFKVGDKVFGKP   55 (64)
Q Consensus        30 e~~G~V~~vg~~v~---------~~~~Gd~V~~~~   55 (64)
                      ...|+|+++|+...         ..++||+|+...
T Consensus        35 ~~~g~VvavG~g~~~~~g~~~~~~vk~GD~Vl~~~   69 (97)
T d1aono_          35 STRGEVLAVGNGRILENGEVKPLDVKVGDIVIFND   69 (97)
T ss_dssp             CCEEEEEEECSBCCTTSSCCCBCSCCTTCEEEECC
T ss_pred             ceeEEEEEEeeeEEccCCcCccccCCCCCEEEEec
Confidence            45799999998643         278999998744

>d1g31a_ b.35.1.1 (A:) GP31 co-chaperonin {Bacteriophage T4 [TaxId: 10665]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: GP31 co-chaperonin
species: Bacteriophage T4 [TaxId: 10665]

Probab=89.47  E-value=0.33  Score=23.38  Aligned_cols=24  Identities=29%  Similarity=0.271  Sum_probs=20.1

Q ss_pred             ceEEEEEeCCCCCC--CCCCCEEEEe
Q psy3510          31 VSGIVEEVGQGVKH--FKVGDKVFGK   54 (64)
Q Consensus        31 ~~G~V~~vg~~v~~--~~~Gd~V~~~   54 (64)
                      ..|.|+++|++|..  .++|+.|..-
T Consensus        43 l~~~viSVG~dVpe~~~kvG~~vlLP   68 (107)
T d1g31a_          43 ELCVVHSVGPDVPEGFCEVGDLTSLP   68 (107)
T ss_dssp             EEEEEEEECTTSCTTSCCTTCEEEEE
T ss_pred             eeEEEEEeCCCCCHHHhccccEEEcc
Confidence            58999999999984  7899998643

>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Thermus thermophilus [TaxId: 274]

Probab=83.44  E-value=0.24  Score=23.19  Aligned_cols=26  Identities=35%  Similarity=0.313  Sum_probs=19.4

Q ss_pred             ceEEEEEeCCCCC---------CCCCCCEEEEecC
Q psy3510          31 VSGIVEEVGQGVK---------HFKVGDKVFGKPI   56 (64)
Q Consensus        31 ~~G~V~~vg~~v~---------~~~~Gd~V~~~~~   56 (64)
                      ..|+|+++|++..         ..++||+|+....
T Consensus        37 ~~g~VvavG~g~~~~~g~~~p~~vkvGD~Vl~~~~   71 (96)
T d1we3o_          37 QKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKY   71 (96)
T ss_dssp             SEEEESCCCCCEECTTSCEECCSCCTTCEEEECTT
T ss_pred             eEEEEeeecceEecCCCCEEEeeEEeCCEEEEccC
Confidence            4699999997632         3889999986543